Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 62 of 131
Found at i:12283010 original size:26 final size:26
Alignment explanation
Indices: 12282971--12283031 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
12282961 ATTGAATTAG
12282971 GCATACGAACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
12282997 GCATACGGAA-TTCATTCCCAGTCTAA
1 GCATAC-GAACTTCATTCCCAGTCTAA
12283023 G-AT-CGAACT
1 GCATACGAACT
12283032 GGACCGAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
23 3 0.09
24 2 0.06
25 2 0.06
26 23 0.70
27 3 0.09
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:12283481 original size:26 final size:26
Alignment explanation
Indices: 12283451--12283503 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12283441 GTTGACTTAG
*
12283451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
*
12283477 GCATATGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
12283503 G
1 G
12283504 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:12283510 original size:480 final size:483
Alignment explanation
Indices: 12282628--12283523 Score: 1108
Period size: 480 Copynumber: 1.9 Consensus size: 483
12282618 CTCACGTAAA
*
12282628 AAGGCTTAATGGACCATTGTACTGAATTACAAGCCATAAAAATGCATGCAACACAGAATATGAAG
1 AAGGCTTAAGGGACCATTGTACTGAATTACAAGCCATAAAAATGCATGCAACACAGAATATGAAG
* *
12282693 ATGGCCTAAACCCACATACCACCCTATTATCCACTAGGCTTATGCATCCCGTCTCTCTGGGCAGG
66 ATGGCCTAAACCCACATACCACCCTATGATCCACTAGGCTTATGCATCCCGTCTCTCTGGCCAGG
*
12282758 CCATAGTACCCACACCGCCCGCCCGCTACGATCGTTTCGTCTGTGGCTTAAGCATAATCGGAGTT
131 CCATAGTACCCACACCGCCCGCCCGCTACGATCGTTTCATCTGTGGCTTAAGCATAATCGGAGTT
* * * *
12282823 CATTCCGCCAAGTCTTAGATTGGACCGGACTGAAGTTGTAGCATGCAGATTGCAGCACGCAGAGG
196 CATTCCGCCAAGTCTAAGATTGGACCGGACTGAAGTTGCAGCATGCAGATTGCAACACGCAAAGG
* * * * ** *
12282888 GGGACCCGATCGATCCTCAGCTTACGTATCCCGCCTGTCTGGCAGGCTGAGCACCCACACGCTCG
261 GAGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCAGACTGAGCACCCACACGCTCG
* *
12282953 TTTCGTGGATTGAATTAGGCATACGAACTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAG
326 TTTCATGGATTGAATTAGGCATACGAACTTCATTCCCAGTCTAAGCATACGGAATACATTCCCAG
*
12283018 TCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACATGCCGGGCTCGAGCATGTGTTGGTGCCA
391 TCTAAGATCGAACTAGACCGAGGGTTGCGACAGCACATGCCGGGCTCGAGCATGTGTTGGTGCCA
12283083 CATGTTTCTTGCCACGAAACTTCAAATG
456 CATGTTTCTTGCCACGAAACTTCAAATG
**
12283111 AAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCATAAAAATGGCATTGGC-ATGCAGAAATA
1 AAGGCTTAAGGGACCATTGTACTGAA-TTACAAGCCATAAAAAT-GCA-T-GCAACACAG-AATA
* * * *
12283174 TGAAGATGTG-CTAAAACCCACCTACCACCCTATCGATCCA-T-GGCTTGTGTATCCCGTCTTTC
61 TGAAGATG-GCCT-AAACCCACATACCACCCTAT-GATCCACTAGGCTTATGCATCCCGTCTCTC
* ** * * * *
12283236 TGGCCA-G-CATAGTGCCC-GTCCGCCCGTCCGC-CCGCTCGTTTCAT-TGGTTGGCTTAGGCAT
123 TGGCCAGGCCATAGTACCCACACCGCCCGCCCGCTACGATCGTTTCATCT-G-TGGCTTAAGCAT
* * * *
12283296 -A-CGGAGTTCATT-C-CC-AGTCTAAGATTGGACTGGA-TCGAGGGTTGCGGCAGTG-GGATTG
186 AATCGGAGTTCATTCCGCCAAGTCTAAGATTGGACCGGACT-GA-AGTTGCAGCA-TGCAGATT-
* * * *
12283354 GTAACATGCAAATGGAGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTC-GACTGA
247 GCAACACGCAAAGGGAGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGG-CAGACTGA
* * * * * * *
12283418 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
311 GCACCCACACGCTCGTTTCATGGATTGAATTAGGCATACGAACTTCATTCCCAGTCTAAGCATAC
*
12283483 GGAGTACATTCCCAGTCTAAGATCGAACTAGACCGAGGGTT
376 GGAATACATTCCCAGTCTAAGATCGAACTAGACCGAGGGTT
12283524 ACGGCAGCTC
Statistics
Matches: 351, Mismatches: 47, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
477 1 0.00
478 19 0.05
479 13 0.04
480 147 0.42
481 13 0.04
482 16 0.05
483 59 0.17
484 12 0.03
485 6 0.02
486 39 0.11
487 21 0.06
488 5 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (483 bp):
AAGGCTTAAGGGACCATTGTACTGAATTACAAGCCATAAAAATGCATGCAACACAGAATATGAAG
ATGGCCTAAACCCACATACCACCCTATGATCCACTAGGCTTATGCATCCCGTCTCTCTGGCCAGG
CCATAGTACCCACACCGCCCGCCCGCTACGATCGTTTCATCTGTGGCTTAAGCATAATCGGAGTT
CATTCCGCCAAGTCTAAGATTGGACCGGACTGAAGTTGCAGCATGCAGATTGCAACACGCAAAGG
GAGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCAGACTGAGCACCCACACGCTCG
TTTCATGGATTGAATTAGGCATACGAACTTCATTCCCAGTCTAAGCATACGGAATACATTCCCAG
TCTAAGATCGAACTAGACCGAGGGTTGCGACAGCACATGCCGGGCTCGAGCATGTGTTGGTGCCA
CATGTTTCTTGCCACGAAACTTCAAATG
Found at i:12284382 original size:26 final size:26
Alignment explanation
Indices: 12284346--12284398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12284336 GTTGGCTTAG
*
12284346 GCATACAGAGCTTATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
12284372 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
12284398 G
1 G
12284399 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:12284919 original size:26 final size:26
Alignment explanation
Indices: 12284885--12284937 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12284875 GTTAACTTAG
12284885 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12284911 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12284937 G
1 G
12284938 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12286531 original size:26 final size:26
Alignment explanation
Indices: 12286494--12286572 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12286484 GTTGACTTAG
*
12286494 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
12286520 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
*
12286546 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
12286572 G
1 G
12286573 ATCGAATCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:12287220 original size:4 final size:4
Alignment explanation
Indices: 12287211--12287236 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
12287201 CCGACGTAGT
12287211 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
12287237 TCGTTTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:12288570 original size:875 final size:871
Alignment explanation
Indices: 12286546--12291265 Score: 5772
Period size: 877 Copynumber: 5.5 Consensus size: 871
12286536 TCCAGTCTAA
* * * * * * * *
12286546 GCATACGAAGTTCATTACCAGTCTAAGATCGAATCAGACTGAGGGTTACAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
12286611 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G----CCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCCGGAGAA
* * *
12286666 CCTGACCGACGACAGTAGGGTTCCGACGATCTGG-GGGGCCGGGGGGTGTGCGCACATGATGTAC
131 CCTGACCGACGGCATTAGGGTTCCGACGATC-GGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
12286730 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATCTCGAGAACTCAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCAC
*
12286795 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12286860 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * *
12286925 TGCATGCCAAAAAAAATACAAGGATCACAACTACCAAGTTGGGGGCCAAAACTCATTTCGAGAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12286990 ATTTTAGAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* *
12287055 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGCCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12287120 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * ** * * *
12287185 CATTCAGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATTGGG
649 CATCCCGCCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCG-CC-CTTGCTCGTTTCGTCGGT
* * * * * *
12287250 TGGCCTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGTTTTCGGCAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGGTTT-GGCAGCAG
* * * * * * *
12287315 GATTGGCAGCACCCAGAGGGGGACCCT-GCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCG
772 GATCGGTAGCACGCAGAGGGGGA-CCTGGCCGAT-CCCGACTTGCACATCCCGCCCCTCT-GCCG
* * * * * *
12287379 GCTAAGTGCCCGCATGCTCATTTTGTGGGTTGACTGAG
834 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * *
12287417 GCATACGGAGTTCATTCCTA-TCTAAGATCCGACCGGACCGGGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12287481 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCACCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CCGGAGA
* * * * *
12287546 ACCTGACTGACGACATTGGGGTTCCGACGATCGAAGGGGTCGAGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGAGGGGCCG-GGGGGTGTGCGCACATGATGTG
* ** * * *
12287611 CGATGGGTTCTGCCACTTGGCCCTTATATTGGACCCCTATCCCTTAGCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12287676 ACCCCCTTGAATAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGGAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12287741 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
12287806 TGCATGCCAAAAAAAATACACGTATCATGTCTACAAAGTTTGGGCCCAAATCTCCTTCCAAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
12287871 ATTTTACAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAAT-GTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
12287935 GCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12288000 TTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
12288065 CATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCACTTGCTCGTTTCGTCGGTTGGC
649 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-CTTGCTCGTTTCGTCGGTTGGC
* *
12288130 TTAGGCATA-GGAGTTCATTCCCAGTCTAAGATTGGATCAAACTGAGGGATGTGGCAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGG-TTTGGCAGCAGGATC
* * *
12288194 GGTAGCACACAGAGTGGGACCTGGCCGATCCCTGACTTGCACATCCCGCCCCTCTAGCTGACTGA
776 GGTAGCACGCAGAGGGGGACCTGGCCGATCCC-GACTTGCACATCCCGCCCCTCT-GCCGACTGA
*
12288259 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
839 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
12288292 GAATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGCTGCAGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
12288357 TTCGGGAATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATTGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-TCCCGGAGA
* * * * * *
12288422 TCCTGACC-AGTGGCATTGGGGTTCCGATGATCGGAGGGGCTGGGGGGTGTGCTCACATGATGTG
130 ACCTGACCGA-CGGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12288486 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12288551 ACCCACTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12288616 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12288681 TGCATGCCAAAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
389 TGCATGCC---AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* **
12288746 AAAATTTTAAAAAATCCCCAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCAT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
12288811 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12288876 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCA-GCTATCGATCCACGACTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
12288940 GCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCTGCCCGCCCG---TT--T-GTTTCGTCGGTTGG
646 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTTGCTCGTTTCGTCGGTTGG
* * *
12288999 CTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGG-----ACT---GG-AT--C-G-A-G---
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGGTTTGGCAGCAGGATC
* * * * **
12289047 GGTTGC-GGCAGCA---GGA-CTGG-C-A--GC-AC--GCA-A---AG-------GGGGACTGAG
776 GGTAGCACGCAG-AGGGGGACCTGGCCGATCCCGACTTGCACATCCCGCCCCTCTGCCGACTGAG
12289089 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
840 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * *
12289121 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATC-GAAGCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* *
12289185 GCTCGGGCATGTGCCAGGCATGTGCTGCTGCCGCATTTTTCTTCATC----CACCATTGCCGGAG
65 GCTCGGGCATGT-----GC---TG--G-TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
* * * *
12289246 CATCATCGGAGAACCTGACCGGCGGCATT-GAGGTTCCGGCGATCGG-GAGGCCGGGGGGGTGTG
119 CATC-CCGGAGAACCTGACCGACGGCATTAG-GGTTCCGACGATCGGAGGGGCC-GGGGGGTGTG
* * *
12289309 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCGTATCCTTCATCAAAC
181 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
12289374 CTCTAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTT
246 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TT
* * *
12289438 CAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTA
310 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
12289503 GCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTT-GGGCCAAAA
375 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * *
12289567 CTCCTTCCGAAACAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATTGTGGAAAATAAA
440 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
12289632 AAACGAGT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAC
505 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
12289696 CCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGCCTAAACCCATCTACCACCCCATCA
570 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * *
12289761 ATCCACGTCTTGCACATCCCACCTCTCTGGCTGACGTAGTGCCCACCCGCCCG---TT--T-ATT
635 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTTGCTCGTT
* * * ** *
12289820 TCGTCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTCAGAGT-GAACTGGATC-GAGGGTT
700 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGA-TCAAACTGAGGGTT
* * * * * * * * *
12289883 ACGGTAGCAGCATCAGTAGCACGCTGAGGGGGACCCGGCCGATCCCCAGTTTCCACATCCCGCCC
763 -TGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGGCCGATCCCGA-CTTGCACATCCCGCCC
*
12289948 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
826 CTCT-GCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * **
12289995 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTTTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
12290060 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CCGGAGA
* * * * *
12290125 AGCTGACCGACAGCATTAGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
130 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12290190 GATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
12290255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12290320 GGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGATTTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
12290385 GCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGTCAAAAATCCTTCTGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** *
12290450 TTTTGAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
* *
12290515 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
12290580 TGGCACACAGAAATATGAAGATTTGCCTCAACCCACCTACCACCGTATCGATCCACGGCTTGTGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
12290645 ATTCCGTCTCTCTGGCCAGCGTAGTACCCGTCTGCACGCCCGTCTGCTCATTTCGTCGGTTGGCT
650 ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-T-TGCTCGTTTCGTCGGTTGGCT
** * * *
12290710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTCCGGTAGCAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGGTT-TGGCAGCAGGATCG
** * * * * * * * *
12290775 ACAGCACGCAGAGGGGGGCCCGACCGATCCCCGGCTTGCGCATCTCACCCCTTTAGCCGACTGAG
777 GTAGCACGCAGAGGGGGACCTGGCCGAT-CCCGACTTGCACATCCCGCCCCTCT-GCCGACTGAG
* * *
12290840 CACCCGCACGCTCGTTTTGTGGGTTGACTTAG
840 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
12290872 GCATACGGAGTTCATTCCCAATCTATG-TCGGACCGGACCGAGGGTTACGACAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** *
12290936 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCACCGATGCACCATCGCCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CCGGAGA
* * * *
12291001 ACATGATCGACGGCATTAGGGTTTC-AGCGATCGGAGGGGCCGAGGGGGTGTGCGCACATGATTT
130 ACCTGACCGACGGCATTAGGGTTCCGA-CGATCGGAGGGGCCG-GGGGGTGTGCGCACATGATGT
* * *
12291065 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCTCCTATCCCACATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12291130 CTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCTATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12291195 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12291260 ATGCAT
388 GTGCAT
12291266 AAACCCACCT
Statistics
Matches: 3322, Mismatches: 416, Indels: 216
0.84 0.11 0.05
Matches are distributed among these distances:
828 1 0.00
829 102 0.03
831 106 0.03
832 168 0.05
833 31 0.01
834 1 0.00
835 8 0.00
836 252 0.08
837 3 0.00
838 1 0.00
839 1 0.00
840 21 0.01
841 3 0.00
843 2 0.00
845 2 0.00
846 1 0.00
847 1 0.00
848 1 0.00
849 4 0.00
850 8 0.00
851 3 0.00
852 3 0.00
853 9 0.00
854 3 0.00
855 1 0.00
856 2 0.00
857 1 0.00
858 2 0.00
859 2 0.00
861 1 0.00
862 2 0.00
863 21 0.01
864 1 0.00
866 6 0.00
867 289 0.09
868 77 0.02
869 149 0.04
870 102 0.03
871 41 0.01
873 4 0.00
874 112 0.03
875 346 0.10
876 292 0.09
877 372 0.11
878 160 0.05
879 107 0.03
880 148 0.04
881 286 0.09
882 63 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (871 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCCGGAGAA
CCTGACCGACGGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTTGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGGTTTGGCAGCAGGATCGGTAG
CACGCAGAGGGGGACCTGGCCGATCCCGACTTGCACATCCCGCCCCTCTGCCGACTGAGCGCCCG
CACGCTCATTTCGTGGGTTGACTTAG
Found at i:12291566 original size:26 final size:26
Alignment explanation
Indices: 12291530--12291582 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12291520 GTTGACTTTG
12291530 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12291556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12291582 G
1 G
12291583 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12293366 original size:26 final size:26
Alignment explanation
Indices: 12293330--12293382 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12293320 GTTGACTTAG
12293330 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12293356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12293382 G
1 G
12293383 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12294225 original size:899 final size:896
Alignment explanation
Indices: 12291265--12294987 Score: 4742
Period size: 872 Copynumber: 4.2 Consensus size: 896
12291255 TTTTTATGCA
* * * *
12291265 TAAACCCACCTACTACCCTATCGATCCACGGCTTGCACTTCCCATCTCTCTGGCCGACGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
12291330 CCGCCCGCCCGTCCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACTAAGTTCATTCCCAATCT
66 CCGCCCG--C--CCGCCCGCTCGTTTCGTTGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
* * *** * * * *
12291395 AAGATCAGACCGGACTGAGGATTGCGGTTGCAGGATCGGCAGCACGCAGAGGGAGACCCGACCGA
127 AAGATCAGAACGGACTGAGGGTTGCGGCAACAGGATCGGCAGCACACAGAGGGGGACCAGGCCGA
* * * * *
12291460 TCCCAGGCTTATGCATCCCGCCCCTCTGGCCT-GCTGAGTGCCCACACGCTCGTTTCGTAGGTTG
192 TCCCCGGCTTACGCATCCCGCCCCTCTGG-CTGGCTGAGCGCCCACACGCTCGTTTCATTGGTTG
*
12291524 ACTTTGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
256 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
12291589 CTAGACCGAGGGTTGCGCCAGCACATGTTGGGCTCGAGCATGTGGTGGTGCCGCATTTTTCTTCC
321 C-CGACCCAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* * *
12291654 CCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACC-AGCGACATTGGGGTTCCGGCGATC
385 CCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGA-CGACATTGGGGTTCCGACGATC
*
12291718 GGGTGGGGCGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
449 GGG-GGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
** *
12291783 CCCTTTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAAG
512 CCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGG
*
12291848 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGG-CACTTTTTTTCAAATGATCACAAAAT
576 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACAC-TTTTTTCAAATGGTCACAAAAT
* *
12291912 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT--AAAAAAAAAAACAAGGATCACAT
639 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACAT
* * * * **
12291975 TTACCAATTTTGGGGCCAAAACTTCTTCCAAAAAATTTTTAAAAAATAACGAACCGTAAAAAGTT
704 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* *
12292040 TCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
769 TCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
12292105 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
834 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* *
12292168 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGAGGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * *
12292233 CCGCCCGTCCTCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
66 CCGCCCG----CCCGCCCGCTCGTTTCGTTGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
* * * * ** ***
12292298 AAGATCAGACCGGACCGAGGGTTGCGGCAACAAGATTGGCAGCATGCAGAGGGGGAACC-TTTCG
127 AAGATCAGAACGGACTGAGGGTTGCGGCAACAGGATCGGCAGCACACAGAGGGGG-ACCAGGCCG
** ** * * ** *
12292362 ATCCCCGGCTTGTGCATCTAGCCCCTCTGGCCGACTGAGCGTTCATACGCTCGTTTCATTGGTTG
191 ATCCCCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTCATTGGTTG
* * * * **
12292427 ACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATTGGA
256 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
12292492 CCTGATCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCAAGTGCTGCTGCCGCATTTTTCTTCA
321 CC-GACCCAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * *
12292557 TCGGGGCACCATCGTCAGATCATCGCCGGAGAACCTGACCGACGGCATTTGGGTTCCGACGATCG
385 CCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCG
* * *
12292622 GGGGGCCGGGGGGTGTGCGCACGTGATGTGCGATGTGTGCTGGTACTTGGCCTTTATATTGGCCC
450 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
12292687 CCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATGTTATAGGTTT
515 CCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
12292752 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCT
579 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
12292817 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAAAAAAAATACAAGGATCACATCAACC
644 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACC
* * * * * **
12292882 AAATTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAAT-CTGAACCGTAAAAAATTTTGAA
709 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
12292946 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
774 AATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
12293011 TGTATGAATTTACAAGCCGTAAAAATGGCACTGGCATGCTA-AAATATGAAGATGTGCC
839 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCC
* ** * *
12293069 TAAACCGC-CCTACCACTCTATCGATCCACGGCTTGCGCATCTTGTCTTTCTGGTCGACGTAGTG
1 TAAACC-CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
** * * * * * * *
12293133 CCCAACCGCTCGCCCGCTCATTCCG-TCAGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAA
65 CCCGCCCGCCCGCCCGCTCGTTTCGTTGA-TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
12293197 GATCAGACCGAACTGAGGGTTGTGGTAACAGGATCGACAGCACACAGAGGGGGACCAGGTCGATC
129 GATCAGAACGGACTGAGGGTTGCGGCAACAGGATCGGCAGCACACAGAGGGGGACCAGGCCGATC
* * * * * *
12293262 CCCGGCTTACGCATCTCGCCCCTCTGG-TCAGTTGAGCGCCCGCACGCTCGTTTTATGGGTTGAC
194 CCCGGCTTACGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCACACGCTCGTTTCATTGGTTGAC
12293326 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
258 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
12293391 GAACCCAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGTC
323 G-ACCCAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* * * * **
12293456 GGGACACCATCG-CTGGAGCATCGTCGGAGAACCTGACCGACGACATTGTGGTTCCGGTGATCAG
387 GGGGCACCATCGTC-AGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATC-G
*
12293520 GGGGGCCGGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
450 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* ** * *
12293585 CCTATCCATCATCAAAGATTGAGAACTCACACCCACGTAAAGAGCATTTGAGATTTTACAGGTTT
515 CCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
12293650 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGT
579 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * **
12293715 ACACTTCGAGTTTTTAACTGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACC
644 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACC
* * * *
12293780 AAGTTTGGGGCCAAAAGTCCTTGCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTT-ACA
709 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA-A
* * * *
12293844 AAATCGTGAAAAATAGAAAATGTGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCA
773 AAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
12293909 TTGTATGAATTTACAAGTCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCC
838 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
12293968 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * ** * *
12294033 CTGCCCTCCCGTCCGCTCGTTTCGTTGACTGGCTTAGGCATACGAAGTTCATTCCTTGTTTGAGA
66 CCGCCCGCCCGCCCGCTCGTTTCGTTGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
* * * *
12294098 TCTGAACGGA-TCGAGGGTTACGGCAACAGGATCGGCAACACACAGAGGGGGACTAGGCCGATCC
131 TCAGAACGGACT-GAGGGTTGCGGCAACAGGATCGGCAGCACACAGAGGGGGACCAGGCCGATCC
* * * * * *
12294162 CCGACTTGCGCATCCCGCCTCTCTGGCTGGCTGAGCGCCCGCACGCTTGTTTCGTTGGTTGACTT
195 CCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTCATTGGTTGACTT
*
12294227 AGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CAGACCGA
260 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * *
12294271 --C--GGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGG
325 CCCAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * * * * *
12294332 GCACCATCGTCGGAGCATCACCAGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGG
390 GCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGG
** *
12294397 GCCCAGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTA
454 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
12294461 TCCCCCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTG
519 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
12294526 CCAGTAGCCCTTGAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACAC
583 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
12294591 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTATCAAGT
648 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGT
* * * **
12294656 TTGGGGCTAAAAGTCCTTCC-GAAAAATGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT
713 TTGGGGCCAAAACTCCTTCCAAAAAAAT-TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
12294720 CGTGAAAAATAAAAAACGACTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
777 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
12294785 ATGAATTTACAAGCCATGAAAATGGCATTGGCAAGCAGAAATATGAAGATGTACC
842 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * * *
12294840 TAAA-CCATCCTACCACCCTATCAATCGACGGCTTCCGCATCCCGTCTCTCTGGACGGCGTAGTG
1 TAAACCCA-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * *
12294904 CCCGCCCGCCCGCCCGCTTGCTCGTTTCGTTGGTTGGCTTAGGCATAC-AGAGTTCATTTCTAGT
65 CCCGCCCGCCCG-CC-C--GCTCGTTTCGTTGATTGGCTTAGGCATACGA-AGTTCATTCCCAGT
* *
12294968 CTAAGATCAGACCGAACTGA
125 CTAAGATCAGAACGGACTGA
12294988 TCTTGCTGCC
Statistics
Matches: 2473, Mismatches: 310, Indels: 101
0.86 0.11 0.04
Matches are distributed among these distances:
871 9 0.00
872 446 0.18
873 117 0.05
874 2 0.00
875 2 0.00
876 52 0.02
877 2 0.00
878 7 0.00
884 1 0.00
886 1 0.00
895 2 0.00
896 5 0.00
897 311 0.13
898 281 0.11
899 368 0.15
900 68 0.03
901 334 0.14
902 74 0.03
903 385 0.16
904 4 0.00
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
CCGCCCGCCCGCCCGCTCGTTTCGTTGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
TCAGAACGGACTGAGGGTTGCGGCAACAGGATCGGCAGCACACAGAGGGGGACCAGGCCGATCCC
CGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTCATTGGTTGACTTA
GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAC
CCAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
CACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTG
GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
Found at i:12298381 original size:26 final size:26
Alignment explanation
Indices: 12298351--12298402 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
12298341 GGGACTTACA
12298351 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12298377 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12298403 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:12301063 original size:26 final size:26
Alignment explanation
Indices: 12301029--12301086 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
12301019 CGTTGGTTGA
*
12301029 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGAAGTTCATTCCCAGT
*
12301056 TTAAGCATACGAAGTTCATTCCCAGT
1 CTAAGCATACGAAGTTCATTCCCAGT
12301082 CTAAG
1 CTAAG
12301087 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGAAGTTCATTCCCAGT
Found at i:12301520 original size:904 final size:904
Alignment explanation
Indices: 12300339--12302736 Score: 3348
Period size: 904 Copynumber: 2.7 Consensus size: 904
12300329 AAGATCGACA
*
12300339 GCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
12300404 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
12300469 AGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTACC
131 AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGC
* * * * ** *
12300534 TGAATTTTTTTGTACACGCCAAAAAAAATACAGGGATCACGTCTACCATGTTTGGGGCCAAAACT
196 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTACGGGGCCAAAAAT
* ** * * * * *
12300599 TCTTCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAAAAA
261 CCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
12300664 ACCAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
326 ACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCC
* * *
12300729 ATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCA-CTGACCACCGTATCGA
391 ATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCT-ACCACC-TATCGA
* * * *
12300793 TCCACGGCTTGCGCATCCCGTCTCTCTAGCCGATGTAGTGCCTGCTCACCCGCCCGCCCGCTCGT
454 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGT
* * *
12300858 TTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCGGA-CTGAGGGAT
519 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTT
** * * * * *
12300922 GTGGTAGTAGGATCGGTAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCAACC
583 ACGGCAGTAAGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGAATCCCAACC
* * * *
12300987 CTCTAGCCGGTTGAGCGCCCGTACGCTCATTTCGTTGGTTGACTAAGGCATACGGAG-TTCA-TT
648 CTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGCTTCACTT
*
12301050 CCCAGTTTAAGCATACGAAGTTCATTCCCAGTCT-AAGATCAGACCGGACCGAGGATTGCGACAG
713 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAGATCAGACCGGACCGAGGATTGCGACA-
* * * * * * *
12301114 TACATGTTGGGCTCGGGTATGTGCTGGTGTCGAAGTTTTCTT-GTCGGAGCACCATCGCCGGAGC
777 CACATGCTGGGCTCGGGTATGTGCTGGTGCCGCAGTTTTCTTCATCGGGGCACCATCGTCGGAGC
* *
12301178 ATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCTGGGGGGGTGTGC
842 ATCGTCGGAGAACCTAACCGACAGCATTGGGGTTCCGACGATC-GGGGGG-CTGGGGGGGTGTGC
* *
12301243 GAACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
12301308 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
12301373 AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTGACAAAATGTTGTACACTTCGAGTTTTCAGC
131 AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGC
* * *
12301438 TCAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGGACGGTGCCAAAAAT
196 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTACGGGGCCAAAAAT
* * * *
12301503 CCTTCCAAAAAAATTTTACAAAATCCCGAACCACAAAAAGTTTCAAAAGTCATGAAAAATAGAAA
261 CCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
12301568 ACGGGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGATTTTACAAGCC
326 ACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCC
* * * *
12301633 ATAAAAATGGGATCAGG-ATGTAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
391 ATAAAAATGGCATC-GGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCA-CCTATCGA
* * * * * * *
12301697 TCCATGGCTTGCACATCCCGTTTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCTGCCCACTCGT
454 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGT
*
12301762 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTA
519 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTA
* * *** * * ** *
12301827 CGGCAGTAGGATTGGCAGCACATAGAGGGGCACCCGACCGATCCCCGGCTTGCGAATCCCGTCGC
584 CGGCAGTAAGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGAATCCCAACCC
* * ** * *
12301892 TCTGGCCAGTTGAGCGCCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACAGA-TTTCA-TTC
649 TCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGCTTCACTTC
* * * * *
12301955 CTAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCAAACCGGGCCGAGGGTTGCGACCAC
714 CCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAGATCAGACCGGACCGAGGATTGCGA-CAC
* * * *
12302019 ACATGCTGGGCTTGAAG-ATGTACTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGC
778 ACATGCTGGGCTCG-GGTATGTGCTGGTGCCGCAGTTTTCTTCATCGGGGCACCATCGTCGGAGC
* * * * * * *
12302083 ATCGTCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACAATCGGGGGGCCGGGGGGGGTATGC
842 ATCGTCGGAGAACCTAACCGACAGCATTGGGGTTCCGACGATCGGGGGG-CTGGGGGGGTGTGC
*
12302147 GCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
12302212 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
12302277 AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACCAAATATTGTACACTTCGAGTTTTCAGC
131 AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGC
* * *
12302342 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTACGGTGCCAAAAAT
196 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTACGGGGCCAAAAAT
* *
12302407 CCTTCCAAAAAATTTTTAAAAAATCAT-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAA
261 CCTTCCAAAAAAATTTTAAAAAATC-TCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
12302471 AACGGGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGC
325 AACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGC
* ** *
12302536 CATAAAAAAGGCATCGGCATGCAGAAATATGAAGATGTGCGAAAACTCACCTACAACTCTATCGA
390 CATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCAC-CTATCGA
* *
12302601 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGA-CTGCCCGCTCGCTCG
454 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-ACCCGCCCGCCCGCTCG
** * * *
12302665 TTTCGTCGGTTGTTTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATCAGACCGG-GCAGAGGGT
518 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGT
*
12302729 TGCGGCAG
582 TACGGCAG
12302737 CACATGCTGG
Statistics
Matches: 1335, Mismatches: 146, Indels: 26
0.89 0.10 0.02
Matches are distributed among these distances:
903 4 0.00
904 1264 0.95
905 67 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (904 bp):
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGC
TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTACGGGGCCAAAAAT
CCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
ACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCC
ATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACG
GCAGTAAGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGAATCCCAACCCTC
TGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGCTTCACTTCCC
AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAGATCAGACCGGACCGAGGATTGCGACACACA
TGCTGGGCTCGGGTATGTGCTGGTGCCGCAGTTTTCTTCATCGGGGCACCATCGTCGGAGCATCG
TCGGAGAACCTAACCGACAGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGGTGTGC
Found at i:12301967 original size:26 final size:26
Alignment explanation
Indices: 12301938--12301990 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12301928 GTTGACTTAG
* *
12301938 GCATACAGATTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12301964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12301990 G
1 G
12301991 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12303547 original size:26 final size:26
Alignment explanation
Indices: 12303517--12303569 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12303507 GTTGACTTAG
12303517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12303543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12303569 G
1 G
12303570 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12304446 original size:26 final size:26
Alignment explanation
Indices: 12304416--12304468 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12304406 GTTGACTTAG
12304416 GCATA-CGAAGTTCATTCCTAGTCTAA
1 GCATACCG-AGTTCATTCCTAGTCTAA
*
12304442 GCATACCGAGTTCATTCTTAGTCTAA
1 GCATACCGAGTTCATTCCTAGTCTAA
12304468 G
1 G
12304469 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCTAGTCTAA
Found at i:12304906 original size:898 final size:888
Alignment explanation
Indices: 12303443--12306052 Score: 3555
Period size: 898 Copynumber: 3.0 Consensus size: 888
12303433 GGGGGCCGGG
* * * * *
12303443 CCGATCCCCGGCTTACGCATCCAGCCCTTCTGGCCGGTTGAGCGCCCGAACGCTCGTTTCATGGG
1 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGAACGCTCGTTTCATGGG
* **
12303508 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCTTAGTCTAAGATC
* * *
12303573 GGACCGGATCGAGGGTTACGACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
130 --ACCGGATCGAGGGTTGCG-CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
* * * * *
12303638 TCGAT-GGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATG
192 TCG-TCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCAACGGCATTGGGGTTCCGGTG
* *
12303702 ATCTGGGGGGTCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTTGCCCTTATATT
256 ATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
12303767 GGCCCCCTGTCCCTCTTCAAACCTCGAGAACTAACACCCCTTTAAAGAGCATTTGAGATTTTACA
319 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACA
* *
12303832 GCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAAT
383 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
12303897 CTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAATAAAAATACAAGGATCACGT
448 CTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
12303962 CTACCAAGTTTGGGGCCGAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
513 CTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
*
12304027 TCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
578 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
12304092 ACCATTATATGAATTTACAAGCCATAAAAATGGCATTGACTTGCAGAAATATGAAGATGTGCCTA
643 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTA
* * * *
12304157 AACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCTCGTCTCTTTGGCCGGCGTACTGCCC
708 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-TG--C
* *
12304222 GTCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGATC
770 GTCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
12304287 AGACCAGACCGAGGGTTGCAGCAGCAGGATTGGCAGCACATAGAGTG-GGACCCGA
835 -GACCAGACCGAGGGTTGCAGCAGCAGAATCGGCAGCACACAGAG-GAAGACCCGA
* * * *
12304342 CCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCATGGG
1 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGAACGCTCGTTTCATGGG
*
12304407 TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACCGAGTTCATTCTTAGTCTAAGATC
66 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA-CGAGTTCATTCTTAGTCTAAGATC
* * * *
12304472 AAACCGGATCGAGTGTTGCAGTAGCACATGCTTGGCTCAGGCATGTGCTGGTGCCGTATTTTTCT
130 --ACCGGATCGAGGGTTGC-GCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
* * * *
12304537 TCGTCGGGGCA-CAGTTGTCGGAGCATTGCCAGAGAACCTGACCAACGGTATTAGGGCTT-CGGT
192 TCGTCGGGGCACCA-TCGTCGGAGCATCGCCAGAGAACCTGACCAACGGCATT-GGGGTTCCGGT
* * *
12304600 GATCGGGGGGCCGGGGGGTGTGCCCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATT
255 GATCGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
12304665 GGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTCGAGATTTTACA
319 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACA
**
12304730 GGTTTGCTGCCAGTAGCCACCAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
383 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
12304795 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
448 CTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * **
12304860 CTACCAAGTTTGAGGCC-AAAATGCCTTCCGAAAAAATTTAAAAAAATCCCAAACCACAAAAAGT
513 CTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
12304924 TTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA-TTCACGTGAAGGCTTAAAG
577 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
12304988 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCT
642 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCT
* * *
12305053 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGAAGTGC-
707 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-TGCG
* * *
12305117 T-CGCCCG-CT--T-GTTTCGTCAGTTGGCCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG
771 TCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
12305177 AACCAGACCGAGGGTTGCGGCAGCAGAATCGGTAGCACGCAGAGGAAGACCCGA
836 -ACCAGACCGAGGGTTGCAGCAGCAGAATCGGCAGCACACAGAGGAAGACCCGA
* * * * * * ** *
12305231 CCAATCCGCGGGTTGTGCATCCCACCCCTCTGG-TCGGCTGAGCGCCCGCACGCTAATTTCGTGG
1 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGAACGCTCGTTTCATGG
*
12305295 GTTGACTTAGGCAAAC-AGAGTTCATTCCCAG--T---C-TA--AG---A---TT-G-----G--
65 GTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGAGTTCATTCTTAGTCTAAGAT
* *
12305337 -ACCGGATCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTT
129 CACCGGATCGAGGGTTGC-GCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
** * * * * * *
12305401 CACCAGGGCACCATCGTCGAAGCATCGCCAAAGAACCTGACTAGCAGCATTGGGGTTCCGGTGAT
193 CGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCAACGGCATTGGGGTTCCGGTGAT
* *
12305466 C-----G-GGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATGGGCC
258 CGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
12305525 CCCTATCCCTCATCAAACCTCCAAAACTCACACCCCTTAAACAGCATTTGAGATTTTACAAGTTT
323 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
12305590 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
388 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
12305655 ACACTTCGAGTTTTTAGCTGAATGTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACC
453 ACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
*
12305720 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAA
518 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
** * * * *
12305785 AATCGCGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTGACGGGATGGCTTAAGGGACCAT
583 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
12305850 TGTAAGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
648 TGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
12305915 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGT-TGTGCCCGCCC
713 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTATGCGTCCGCCC
* * *
12305979 GCCCGCTCGTTTCGTCGGTTGGCTTAGCCA-ACGGAGTTCATTCCCAGTCTAAGATTTGACCAGA
778 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGA
12306043 CCGAGGGTTG
842 CCGAGGGTTG
12306053 TGGCAGCACA
Statistics
Matches: 1533, Mismatches: 156, Indels: 84
0.86 0.09 0.05
Matches are distributed among these distances:
854 2 0.00
855 242 0.16
856 226 0.15
857 1 0.00
858 1 0.00
859 40 0.03
860 21 0.01
862 5 0.00
863 102 0.07
864 2 0.00
868 1 0.00
873 1 0.00
874 2 0.00
877 1 0.00
880 2 0.00
883 2 0.00
884 1 0.00
887 1 0.00
888 4 0.00
889 166 0.11
890 1 0.00
892 2 0.00
893 6 0.00
894 1 0.00
895 1 0.00
897 140 0.09
898 333 0.22
899 219 0.14
900 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGAACGCTCGTTTCATGGG
TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCTTAGTCTAAGATCA
CCGGATCGAGGGTTGCGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT
CGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCAACGGCATTGGGGTTCCGGTGATCGG
GGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTATGCGTCCGCCCGCC
TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGA
GGGTTGCAGCAGCAGAATCGGCAGCACACAGAGGAAGACCCGA
Found at i:12306666 original size:709 final size:700
Alignment explanation
Indices: 12305273--12306774 Score: 2109
Period size: 709 Copynumber: 2.1 Consensus size: 700
12305263 GTCGGCTGAG
* ** * * * * *
12305273 CGCCCGCACGCTAATTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCCAACGGAGTTCATTCCCAGTCTAAGATTAGA
* * *
12305338 CCGGATCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCA
65 CCGGACCGAGGGTTGTGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCA
* * **
12305403 CCAGGGCACCATCGTCGAAGCATCGCCAAAGAACCTGACTAGCAGCATTGGGGTTCCGGTGATCG
130 CCAGGGCACCATCGCCGAAGCATCGCCAAAGAACCTAACTAGCAGCATTGGGGTTCCGACGATCG
* *
12305468 GGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCC
195 GGGGGGTGTGCACACATGATGTGGGATGGGTGCTAGTACTTGGCCCTTATATGGGCCCCCTATCC
*
12305533 CTCATCAAACCTCCAAAACTCACACCCCTTAAACAGCATTTGAGATTTTACAAGTTTGCTGCCAG
260 CTCATCAAACCTCCAAAACTCACACCCCTTAAACAGCATTTGAGATTTTACAAGTTTGCTACCAG
**
12305598 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
325 TAGCCATTAAAGTGTCTGAAATGGGGACACCATTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
12305663 AGTTTTTAGCTGAATGTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
390 AGTTTTTAGCTGAATGTTTTAGTCCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGG
* * *
12305728 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGCGA
455 GGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCACGA
* *
12305793 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTGACGGGATGGCTTAAGGGACCATTGTAAGAA
520 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTAAGAA
**
12305858 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
585 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
12305923 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTC-GACGTTGTGCC
650 CCCTACCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCTG-CGTAGTGCC
*
12305974 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCAACGGAGTTCATTCCCAGTCTAAGATTTGAC
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCAACGGAGTTCATTCCCAGTCTAAGATTAGAC
* * *
12306039 CAGACCGAGGGTTGTGGCAGCACATACTGGGCTCTGGCATGTGCTGGTG-T-CACTTTTTTCTTC
66 CGGACCGAGGGTTGTGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCTGCA--TTTTTCTTC
** * * ** **
12306102 GTCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTAACCT-GTGGCATTGGGGTTCCGACGAT
129 ACCAGGGCACCATCGCCGAAGCATCGCCAAAGAACCTAA-CTAGCAGCATTGGGGTTCCGACGAT
* *
12306166 CGGGGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGG
193 C------G--GGGGGGTGTGCACACATGATGTGGGATGGGTGCTAGTACTTGGCCCTTATATGGG
* * *
12306231 CCCCCTATCCCTCATCAAACCT-CAAGAACTCACAGCCCCTTGAAGAGCATTTGAGATTTTACAG
250 CCCCCTATCCCTCATCAAACCTCCAA-AACTCACA-CCCCTTAAACAGCATTTGAGATTTTACAA
12306295 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCATTTTCAAATGGTCACAAAATC
313 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCATTTTCAAATGGTCACAAAATC
* *
12306360 TTGTACACTTCGAGTTTTTAGGTGAAAT-TTTTAGTGCATGCCAAAAAAAATACAAGGATCACAT
378 TTGTACACTTCGAGTTTTTAGCTG-AATGTTTTAGTCCATGCCAAAAAAAATACAAGGATCACAT
** * *
12306424 CTACCAAGTTTGGGGTGAAAACTTCATCCGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGT
442 CTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGT
** * * *
12306488 TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
506 TTCAAAAATCACGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGG
* *
12306553 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
571 GACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* * *
12306618 AAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCTGTGTAGTGCC
636 AAACCCACCTACCACCCTACCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCTGCGTAGTGCC
* * * *
12306683 CGCCCGCCCGCCTGCTTGTTTCGTCAGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGAT
1 CGCCCGCCCG-CT-C--GTTTCGTCGGTTGGCTTAGCCA-ACGGAGTTCATTCCCAGTCTAAGAT
* * *
12306748 CAGACCGGACTGAGGGTTGTGACAGCA
61 TAGACCGGACCGAGGGTTGTGGCAGCA
12306775 GGATTAGCAG
Statistics
Matches: 707, Mismatches: 73, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
698 2 0.00
699 1 0.00
700 133 0.19
701 28 0.04
706 1 0.00
707 3 0.00
708 83 0.12
709 384 0.54
710 6 0.01
711 1 0.00
713 20 0.03
714 45 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (700 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCAACGGAGTTCATTCCCAGTCTAAGATTAGAC
CGGACCGAGGGTTGTGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCAC
CAGGGCACCATCGCCGAAGCATCGCCAAAGAACCTAACTAGCAGCATTGGGGTTCCGACGATCGG
GGGGGTGTGCACACATGATGTGGGATGGGTGCTAGTACTTGGCCCTTATATGGGCCCCCTATCCC
TCATCAAACCTCCAAAACTCACACCCCTTAAACAGCATTTGAGATTTTACAAGTTTGCTACCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACCATTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATGTTTTAGTCCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
GCCAAAAATCCATCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCACGAA
AAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTAAGAAT
TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTACCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCTGCGTAGTGCC
Found at i:12307807 original size:26 final size:26
Alignment explanation
Indices: 12307771--12307823 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12307761 GTTCACTTAG
*
12307771 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12307797 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12307823 G
1 G
12307824 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12308295 original size:11 final size:10
Alignment explanation
Indices: 12308281--12308306 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
12308271 AAAAAGTTTC
12308281 AAAAATCATG
1 AAAAATCATG
12308291 AAAAATCATG
1 AAAAATCATG
12308301 AAAAAT
1 AAAAAT
12308307 AGAAAACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.08, G:0.08, T:0.19
Consensus pattern (10 bp):
AAAAATCATG
Found at i:12309200 original size:26 final size:26
Alignment explanation
Indices: 12309170--12309222 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12309160 GTTGGCTTAG
* * *
12309170 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTAATTCACAATCTAA
*
12309196 GCATACGAAGTTAATTCACAGTCTAA
1 GCATACGAAGTTAATTCACAATCTAA
12309222 G
1 G
12309223 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATTCACAATCTAA
Found at i:12310175 original size:26 final size:26
Alignment explanation
Indices: 12310138--12310190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12310128 GTTGGCTTAG
*
12310138 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12310164 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12310190 G
1 G
12310191 AGCAGACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12310764 original size:904 final size:894
Alignment explanation
Indices: 12309384--12313955 Score: 5543
Period size: 883 Copynumber: 5.2 Consensus size: 894
12309374 GAAGCTTCGC
*** * *
12309384 CGGAGAACCTGACCGGTGGCATTAGGGTTCCGGCGATCGGGGGGCCCGGGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
*
12309449 GATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
12309514 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
131 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
12309579 TGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
196 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * ** *
12309644 ATTTTGTGCTTGTCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGGCCTTCT
261 -TTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
12309709 GAAAAAATTTAAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAG
325 GAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAG
* **
12309773 TCGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
12309838 AATGGCTTTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
454 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
12309903 GCTTGCGTATCCCGCCTCTCTGGCCAACGTTATGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
519 GCTTGCGCATCCCGTCTCTCTGGCCAACG-TATG--CGCCCGCCCGCCCGCCCGCTCGTTTCGTC
** * * * *
12309968 GGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGAGCAGACTGAAGGTTGTGATAG
581 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAG
* * * * *
12310033 TAGGATCGGTAGCACGTAGAGGGAGACTCGATCGATCCTCGGCTTACGCATCCCGCCCCTCTGGC
646 CAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
12310098 CGGCTAAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
711 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
12310163 AGCATACGAAGTTCATTCCCAGTCTAAGAGCAGACAAGAACGAGGGTTGCGGCAGCACATGCCGG
776 AGCATACG-AG--CATTCCCAGTCTAAGAGCAGAC--GAACGAGGGTTGCGACAGCACATGCTGG
* * * * * *
12310228 GCTCGAGCAAGTGCTGGTGCTGCATTTTTCTTCACCAGGGCACCATCACCGAAGCATTGT
836 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCG-AGCATCGT
* *
12310288 CGGAGAACCTGACCAACGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGGTGTGCTCACAT
1 CGGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
* *
12310353 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGA
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
12310418 AATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTC
131 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
12310483 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGATTTTTTAGGTGAATT
196 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
12310548 GTTTTTTGCATACCAAAAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
261 -TTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*
12310613 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAA-TTTTCAAAAATCATGAAAAATAGAAAGTGAG
325 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTT-AAAAATCATGAAAAATAGAAAATGAG
** *
12310677 TCGTCTTTTCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * * *
12310742 AACGGCATTGTCATGTAGAAATATGAAGATGTACTTAAACCAACCTACCACCCTATCGATCCAGG
454 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** * *
12310807 GCTTGCGCATCCCGTCTCTCTGGCCGACGTA-GTGCCCACCCGCCCAACCGCTCATTTCGTCTGT
519 GCTTGCGCATCCCGTCTCTCTGGCCAACGTATGCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * **
12310871 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAATAG
584 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCAG
* * * * *
12310936 GATCGACAGCACGTAGAGGGGGACTCGACCGATCCTCGACTTGTGCATCCCGCCCCTCTGGCCGG
649 GATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
12311001 TTGAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-
714 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
12311065 AT-C-AG-A----C---C-----G-A-AC---CGATGGTTGCGACAGCACATGCAGGGCTCCGGC
779 ATACGAGCATTCCCAGTCTAAGAGCAGACGAACGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* *
12311110 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG------CA-C-A--ATCGC
844 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGAGCATCGT
* * * *
12311151 CGGAGAACCTAACCGAA-GGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGCGT-TGCACACA
1 CGGAGAACCTGACC-AACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* *
12311213 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCTTCAAACCTCG-G
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
12311277 AACTCACACCCCCTTAAGGAGCATTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGT
130 AACTCACACCCCCTTAAAGAGCA--TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
12311342 ATCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGA
193 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
12311407 ATATTTTTATGCATGCCAATACAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTACT
258 AT-TTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* ** *
12311472 TCCTAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAAC
322 TCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAT
* *
12311536 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAAT
386 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
12311601 AAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCC
451 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** * * *
12311666 ACGGCTTGCGCATCCCGTCTCTCTCGCGGACGTA-GTG--CGCCCGCCCACCCGCTCGTTTCGTT
516 ACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTATGCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * *
12311728 GGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCAGG-CCAGACCGAGGGTTAC-AGT
581 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACTGAGGGTTGCGA-T
* * * * * * *
12311791 AGCAGGATTGGCAGTACGTAGAGGGGGACCCAACCGATCCACGGCTTGCGCATCCCGCCCTTCTA
644 AGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTG
* *
12311856 GCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
709 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
** * * * **
12311921 TAAGCATACG-GACATTCCCAGTCTAAGATAAGAATAGACCCAGGGTTATGACAGCACATGCTGG
774 TAAGCATACGAG-CATTCCCAGTCTAAGAGCAG-A-CGAACGAGGGTTGCGACAGCACATGCTGG
* * *
12311985 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-
836 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-ACCGAGCATCGT
* ** * * ** * *
12312044 CTAGAGAACCTGACCGGCGGCATTGGGGTTCTGGAGATCAAGTGGGCCGGGGGGGGTGTACGCAC
1 C-GGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCAC
*
12312109 ATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
64 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
12312174 GAACTCAAACCCCTTTAAAGA-CGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
129 GAACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * * * *
12312238 TTCTAAAATGGGGACACGTTTTTCAAATGGTCACAAAATATTGTACACTTTGATTTTTTAGCTGA
193 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
12312303 ATTTTTTTGTGCCTGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTAGGGCCAAAACTCTT
258 ATTTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
12312368 TCTGAAAAAATTTTAAAAAATCCCGAACCGCAACAAA-TTTCAAAAATCGTGAAAAATAGAAAAC
322 TCCGAAAAAATTTTAAAAAATCCTGAACCGTAA-AAAGTTTTAAAAATCATGAAAAATAGAAAAT
12312432 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
386 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
12312497 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCC
451 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
12312562 ATGGCTTGCGCATCCCGTCTCTCTGGCC--GGCAT-AG--TGCCCGCCCGCCCGCTCGTTTCGTC
516 ACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTATGCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * *
12312622 GGTTGGCTTAGGCATAAGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTACGATAG
581 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAG
* * * * * *
12312687 CAGGACCGGCAGCACGTAGAAGGGCACCCAATCAATCCTCGGCTTGCACATCCCGCCCCTCTGGC
646 CAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
12312752 CAGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
711 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
12312817 AGCATACGGAGTTCATTCCCAGTCTAAGATC-GTATCGGACCGAGGGTTGC-AGCAGCACATGCT
776 AGCATAC-GAG--CATTCCCAGTCTAAGAGCAG-A-C-GAACGAGGGTTGCGA-CAGCACATGCT
** * *
12312880 GGAATCGGGCATGTGCTGGTGCCACATTTTTCTTCA-C-CGG----------G-GCATCGT
834 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGAGCATCGT
* * * * * *
12312928 CGGAGAACCTGACCAACGGCACTAGGGTTTCGACGATCGGGGGGGTCGGGGGGGGTGTGTGCACA
1 CGGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGGGTGTGCGCACA
* *
12312993 TGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * ** *
12313058 AACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTATTGCCAGTAGCAATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
12313123 CTGAAATGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCGACTTTTTAACTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
12313188 TTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATT
260 TTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
** **
12313253 -C-AAAAAGATTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAATG
323 CCGAAAAA-ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATG
* ** * *
12313316 AGTTC-TCTTGCCATGAAACTTCACCTGAAACCTTAAGGGACCATTTTATGAAATTACAAGCCAT
387 AG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
12313380 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCC
451 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
12313445 ACGGCTT-CTGTATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTCTGCCTGTCCGCTC
516 ACGGCTTGC-GCATCCCGTCTCTCTGGCCAACGTA-TG--CGCCCGCCCG-C--CC-GCCCGCTC
* * * * * *
12313509 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGTTCAGACTGGACTGATGGT
573 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGT
* * * ** * * ***
12313574 TGCGGTAGCAGGATCAGTAGCACACAGAGGGGGACCCGATCCATCC-CTGACTTTTACATCCCGC
638 TGCGATAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTC-GGCTTGCGCATCCCGC
* *
12313638 CCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
702 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
12313703 CCCGGTCTAAG-ATA-G-G-A---CC-G-----GA-C---C--A--AGGGTTGCGACAGCACATG
767 CCCAGTCTAAGCATACGAGCATTCCCAGTCTAAGAGCAGACGAACGAGGGTTGCGACAGCACATG
* * ** *
12313747 CTGGGCTCGGGCATATGCTAGTGCCATATTTTTCTTCATCGGGGCACCTTCACTCGGAGCATCGT
832 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCAC-C-GAGCATCGT
* *** * * ** * *
12313812 CGGAGAACCTGATCGGTGGCATTGCGATTCTAGCGATCGGAGGGGCCGGAGGGGTGTGCGCACAT
1 CGGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
* * *
12313877 GATGTGTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGA
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
12313942 ACTCACACCCCCTT
131 ACTCACACCCCCTT
12313956 GACTTAGGCA
Statistics
Matches: 3187, Mismatches: 381, Indels: 221
0.84 0.10 0.06
Matches are distributed among these distances:
859 1 0.00
860 211 0.07
861 71 0.02
862 373 0.12
863 40 0.01
864 3 0.00
865 1 0.00
867 1 0.00
868 3 0.00
869 50 0.02
870 2 0.00
871 3 0.00
874 56 0.02
877 1 0.00
878 1 0.00
879 5 0.00
880 1 0.00
881 1 0.00
882 9 0.00
883 624 0.20
884 48 0.02
885 4 0.00
886 2 0.00
888 1 0.00
889 3 0.00
891 6 0.00
892 3 0.00
893 4 0.00
894 239 0.07
895 196 0.06
896 362 0.11
897 141 0.04
898 20 0.01
899 2 0.00
900 197 0.06
902 1 0.00
903 6 0.00
904 493 0.15
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
CGGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCAACGTATGCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCAGGA
TCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ACGAGCATTCCCAGTCTAAGAGCAGACGAACGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGAGCATCGT
Found at i:12312828 original size:26 final size:26
Alignment explanation
Indices: 12312792--12312844 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12312782 GTTGACTTAG
12312792 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12312818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12312844 G
1 G
12312845 ATCGTATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12314656 original size:12 final size:12
Alignment explanation
Indices: 12314639--12314663 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12314629 TCGGCCTAGT
12314639 GCCCGCCCGCTC
1 GCCCGCCCGCTC
12314651 GCCCGCCCGCTC
1 GCCCGCCCGCTC
12314663 G
1 G
12314664 TTTCGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:12314870 original size:26 final size:26
Alignment explanation
Indices: 12314841--12314893 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12314831 GTTGACTTAG
12314841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12314867 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12314893 G
1 G
12314894 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12316468 original size:700 final size:699
Alignment explanation
Indices: 12315084--12316482 Score: 2002
Period size: 700 Copynumber: 2.0 Consensus size: 699
12315074 GGTACTTGGC
* * *
12315084 CCTTATATTATCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTCAT
1 CCTTATATTAGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTCAG
* * * *
12315149 ATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGT
66 ATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGC
* * * *
12315214 CACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAG
131 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAG
* *
12315279 GATCAGGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAGATTTTAAAAAATCCCAAACCGT
196 GATCAAGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAATTTTAAAAAATCCCAAACCGT
* ** * * *
12315344 TAAAAGTTTCAAAAATCGTGAAAAATACAAAACGAGTTGTCTTGCCATGAAACTTCACTTGAAGC
261 AAAAAGGATCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGC
* * * *
12315409 CTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCAAAAATATGAAGA
326 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGAAGA
* *
12315474 TGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTTCGTATCCCATCTCTCTGGCCAGCG
391 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCCCATCTCTCTGGCCAGCG
* * * * * * *
12315539 TAGTGCTCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCC
456 TAGTGCCCGCCCGCCCGCCCGCCAGCTCATTTCATCGGTTAGCTTAGGCATACAGAGTTCATTCC
* * *
12315604 CAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATTAGCAGCATGCAGAGGGGGACCC
521 CAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGAATGAGCAGCATGCAGAGGGGGACCC
** * * *
12315669 GATCGATCCCCGGCTTGCGCATCCTGCCCATTTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTG
586 GATCGATCCCCGGCTTGCGCATCCCACCCATCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
* * *
12315734 GGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATAGGATCGGA
651 GGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGA
* *
12315783 CCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTAGCCCCCTAACCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTCA
**
12315848 GATTTTACAGGTTTTTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
65 GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
12315913 CCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA
130 CCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA
* * *
12315978 GGATCAAGTCTACTAAGTTTGGGGCCAAAACTTC-TTCCGAAAAAATTTTAAAAAATCCCGAACC
195 GGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCATT-CGAAAAAATTTTAAAAAATCCCAAACC
*
12316042 GTAAAAAGGATCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCA-TGTGA
259 GTAAAAAGGATCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACT-TGA
* *
12316106 AGGCTTAAAGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGA
323 AGCCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGA
*
12316171 AGATGTGCCTTAACCCACCTACCACCCTATCGATCCACGGCTTGT-GCAT-CCAGTCTCTCTGGC
388 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-TCGCATCCCA-TCTCTCTGGC
* * ** **
12316234 CGGTGTAGTGCCCGTTCGCCCGCCCGCCAGCTCATTTCATCGGTTAGCTTAGGCATGTAGAGTTC
451 CAGCGTAGTGCCCGCCCGCCCGCCCGCCAGCTCATTTCATCGGTTAGCTTAGGCATACAGAGTTC
* * ** * *
12316299 ATTCCTAGTCTAAGATCAGA-TAGGAGTGAA-GGTTATGGTAGCAGAATCGA-CAGCATGCAGAG
516 ATTCCCAGTCTAAGATCAGACCA-GA-CCAAGGGTTACGGCAGCAGAAT-GAGCAGCATGCAGAG
** * * * * *
12316361 GGGGACCCGATCGATCCCCGGCTTGCTTATCCCACCCCTCTGGCCGGTTGAGTGCTCGCACGCTT
578 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCATCTGGCCGGCTGAGCGCCCGCACGCTC
*
12316426 ATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
643 ATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGA
12316483 TCGAGGGTTG
Statistics
Matches: 617, Mismatches: 75, Indels: 15
0.87 0.11 0.02
Matches are distributed among these distances:
699 49 0.08
700 564 0.91
701 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (699 bp):
CCTTATATTAGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTCAG
ATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGC
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAG
GATCAAGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAATTTTAAAAAATCCCAAACCGT
AAAAAGGATCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGC
CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCCCATCTCTCTGGCCAGCG
TAGTGCCCGCCCGCCCGCCCGCCAGCTCATTTCATCGGTTAGCTTAGGCATACAGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGAATGAGCAGCATGCAGAGGGGGACCC
GATCGATCCCCGGCTTGCGCATCCCACCCATCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
GGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGA
Found at i:12318219 original size:869 final size:869
Alignment explanation
Indices: 12315783--12318928 Score: 4089
Period size: 874 Copynumber: 3.6 Consensus size: 869
12315773 TAGGATCGGA
*
12315783 CCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
** *
12315848 GATTTTACAGGTTTTTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
66 GATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
12315913 CCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA
131 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
12315978 GGATCAAGTCTACTAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
196 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACCG
** * * *
12316043 TAAAAAGGATCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAG
260 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
12316108 GCTTAAAGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGAAG
325 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAG
* * * *
12316173 ATGTGCCTTAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT-CCAGTCTCTCTGGCCGG
390 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGGCATCCCA-TCTCTCTGGCCGA
* ** * * * *
12316237 TGTAGTGCCCGTTCGCCCGCCCGCCAGCTCATTTCATCGGTTAGCTTAGGCAT-GTAGAGTTCAT
454 CGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATAG-A-AGTTCAT
* * * * * *
12316301 TCCTAGTCTAAGATCAGATAGGAGT-GAAGGTTATGGTAGCAGAATCG-ACAGCATGCAGAGGGG
517 TCCCAGTCTAAGATCGGAT-GGA-TCGAGGGTTACGGTAACAGGATCGCA-AG-ATGCAGAGGGG
* * ** * * * *
12316364 GACCCGATCGATCCCCGGCTTGCTTATCCCACCCCTCTGGCCGGTTGAGTGCTCGCACGCTTATT
578 GACCCGACCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCTT
* *
12316429 TCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC
642 TCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGA-C-GACCGGACCGAGGGTTGC
* * *
12316494 AGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCC
705 AGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACC
** * * *
12316559 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-AGGGGGCCGGGGGGTGT
770 GGAGCATCGTCGGAGAACCTGATCGATGGCATTGGGGTTCCGACGATGGGGGGGCCGGGGGGTGT
* * *
12316623 GCGCACATGATGAGCAATGGGTGCTGGTACTTGGC
835 GCACACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
12316658 CCTTATATTGGCCCCCTATCCCTCATCAAACCGCAAGAACTCATAACCCCTTAAAGAGCATATGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
12316723 GATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
66 GATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
12316788 TCACAAAATCTTGTACACTTCGAGGTTTTAGTTGAAT-TTTTTGTGCATGCCAACAAAAATACAA
131 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA
* *
12316852 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTCAAAAATCTCGAACCG
196 GGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCGAAAAAATTTTAAAAAATCTCGAACCG
* *
12316917 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGGAACTTCACGTGAAG
260 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
12316982 GCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATACGAAG
325 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAG
* *
12317047 ATGTACCTAGACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGAC
390 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGGCATCCCATCTCTCTGGCCGAC
** *
12317112 GTAGTGCCCGCCCGCCCACCCGCCAATTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTC
455 GTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATAGA-AGTTCATTC
* ** * *
12317177 CCAGTCTAAGATTGGACCAGA-CTGAGGGTTACGGTAACAGGATCGGCAACACGCAGAGGGGGAC
519 CCAGTCTAAGATCGGA-TGGATC-GAGGGTTACGGTAACAGGATC-GCAAGATGCAGAGGGGGAC
* * * * * * * * * *
12317241 CCAACCGCTCCTTGACTTGCGCATCCCACCCCTCTTGCTGGCTGAGCACCCGCACGCTCATTC-C
581 CCGACCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTCGT
** * * * *
12317305 CAG-T--C-TAAGAATACAGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCAGCA
646 GGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGA-C-GACCGGACCGAGGGTTGCAGTA
* *
12317366 GCACATGCTGGGCTCGGGCATGTTCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAG
709 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAG
* *
12317431 CATCGTCGGAGAACCTGATCGATGGCATTAGGGATCC-AGCGATCGGGGGGGCCGGGGGGTGTGC
774 CATCGTCGGAGAACCTGATCGATGGCATTGGGGTTCCGA-CGAT-GGGGGGGCCGGGGGGTGTGC
12317495 ACACATGATGTGCGATGGGTGCTGGTACTTGGC
837 ACACATGATGTGCGATGGGTGCTGGTACTTGGC
*
12317528 CCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
12317593 GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
66 GATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
12317658 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TGTTTTGTTCATGCCAACAAAAATACA
131 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGT-TTTTGTGCATGCCAAAAAAAATACA
*
12317722 AGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCATTCGAAAAAATTTTAAAAAATCTCGTACC
195 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACC
* * * * *
12317786 GT-AAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAA
259 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
12317850 GGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
324 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAA
** * * *
12317915 GATGTACCTAAACCCACCTATGACCCTATTGATCCACGGCTTGGGTATCCCATCTCTTTGGCC-A
389 GATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGGCATCCCATCTCTCTGGCCGA
* * * *
12317979 GCGTAGTGCCCGCCCGCCCACCTGCCCGCTCGTTTCGTAGGTTGGCTTAGGTATACGAAGTTCAT
454 -CGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATA-GAAGTTCAT
* * *
12318044 TCCTAGTCTAAGATCGGATGGATCGAGGGTTGCGGCAACAGGATCAGCAAGATGCAGAGGGGGAC
517 TCCCAGTCTAAGATCGGATGGATCGAGGGTTACGGTAACAGGATC-GCAAGATGCAGAGGGGGAC
* *
12318109 CCGACCAATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
581 CCGACCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-TTTCG
* * ** *
12318174 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACTAAGGGTTGCGGT
645 TGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGA-C-GACCGGACCGAGGGTTGCAGT
* * ** *
12318239 AGCACATGCTAGGCTCGGGCATGTGCAGGTTTTCGCATTTTTCTTCGTCGGGG------CA-C--
708 AGCACATGCTGGGCTCGGGCATGTGCTGG-TGCCGTATTTTTCTTCGTCGGGGCACCATCACCGG
* * *
12318295 --CATCGTCGGAG--CATCATCGGTGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGT
772 AGCATCGTCGGAGAACCTGATCGATGGCATTGGGGTTCCGACGA-TGGGGGGGCC-GGGGGGTGT
**
12318356 GCACACATGATGTGCGATGGGCACTGGTACTTGGC
835 GCACACATGATGTGCGATGGGTGCTGGTACTTGGC
*
12318391 CCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
12318456 GATTTTATAGGTTTTCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC---TTT----TGG
66 GATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
12318514 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA
131 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA
*
12318579 GGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CTGAACC
196 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCTC-GAACC
** * ** *
12318643 ACAGAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
259 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
12318708 GGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
324 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAA
* * * *
12318773 GATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCATCTCTCTGGCCGA
389 GATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGGCATCCCATCTCTCTGGCCGA
* * ** * *
12318838 CGTAGT--------GCCCACCCTCCCGCTTTTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT
454 CGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATA-GAAGTTCATT
* *
12318895 CCCAGTCTAAGATCGGATCAGACCGAGGGTTACG
518 CCCAGTCTAAGATCGGAT-GGATCGAGGGTTACG
12318929 ACAGCACATG
Statistics
Matches: 2003, Mismatches: 235, Indels: 90
0.86 0.10 0.04
Matches are distributed among these distances:
850 60 0.03
851 12 0.01
856 97 0.05
857 26 0.01
858 175 0.09
859 1 0.00
860 3 0.00
862 31 0.02
863 154 0.08
864 11 0.01
867 1 0.00
868 234 0.12
869 252 0.13
870 237 0.12
871 58 0.03
872 1 0.00
873 5 0.00
874 466 0.23
875 178 0.09
876 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (869 bp):
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGT
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGA
TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGGCATCCCATCTCTCTGGCCGACG
TAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATAGAAGTTCATTCCC
AGTCTAAGATCGGATGGATCGAGGGTTACGGTAACAGGATCGCAAGATGCAGAGGGGGACCCGAC
CGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTCGTGGGTT
GACTTAAGCATACGGAGTTCATTCCCAGTCTAAGACGACCGGACCGAGGGTTGCAGTAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC
GGAGAACCTGATCGATGGCATTGGGGTTCCGACGATGGGGGGGCCGGGGGGTGTGCACACATGAT
GTGCGATGGGTGCTGGTACTTGGC
Found at i:12320209 original size:26 final size:26
Alignment explanation
Indices: 12320180--12320258 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12320170 GTTGACTTAC
* *
12320180 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12320206 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12320232 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12320258 G
1 G
12320259 ATCAGATCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12320352 original size:14 final size:14
Alignment explanation
Indices: 12320329--12320365 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
12320319 ATTTTTCTTT
*
12320329 GTCGGGGCACCATC
1 GTCGGAGCACCATC
12320343 GTCGGAGCACCATC
1 GTCGGAGCACCATC
12320357 GTCGGAGCA
1 GTCGGAGCA
12320366 TCGTTGGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.19, C:0.32, G:0.35, T:0.14
Consensus pattern (14 bp):
GTCGGAGCACCATC
Found at i:12321150 original size:26 final size:26
Alignment explanation
Indices: 12321120--12321172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12321110 GTTGGCTTAG
12321120 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12321146 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12321172 G
1 G
12321173 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12322682 original size:896 final size:889
Alignment explanation
Indices: 12320206--12322797 Score: 3483
Period size: 880 Copynumber: 2.9 Consensus size: 889
12320196 CCCAGTCTAA
12320206 GCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGA
1 GCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACT-GGA
* ** *
12320270 CTGAGGGTT-CTGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGG
65 CCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC--T-T---
* * * *
12320334 GGCACCATCGTCGGAGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCAGCAGCATTGGGGTT
123 --C-CC--CG--GG-GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
12320399 TCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
180 ACGGCGATCGGGGGGG-C-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
12320464 CTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGATA
243 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
12320529 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
308 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
12320594 ACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTCTTTTGTGCATGCCAAGAAAAATACAAGG
373 ACAAAATCTTGTACACTTCGAGTTTTTAG-TGATTT-TTTTGT-CATGCCAAAAAAAATACAAGG
* * *
12320659 ATCACGTCTACCAAGTTT-GGGCGCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTTAACCGT
435 ATCACATCTACCAAGTTTGGGGC-CAAAAC-ACTTTCGAAAAAATTTTAAAAAATCCTGAACCGT
*
12320723 AAAAAGTTTCCAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGG
498 -AAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
12320788 CTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATCGCCATGCAGAAATATGAAGA
562 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
*
12320853 TGTGCCTGAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
627 TGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * *
12320918 TAGTGCCCGCCTGCCCGCCCACTCGTTTCATCGTTTGGCTTTGGCATACGGAGTTTATTCCCAGT
692 TAGTG-CC-CC-ACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * ** * * *
12320983 CTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAAGATTGGTAGCACGCAGAGGGGGACCCGATC
754 CTAAGATCG-ACTGGACCGAGGGTTGCGGTAGCAAGATCGACAGCACACAGAGGGAGACCCGACC
* * * * *
12321048 GATCTCCGGCTTGCGAATATCGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTT
818 GATCCCCGGCTTGCGAATATCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
*
12321113 GGCTTAG
883 GACTTAG
* * * ** *
12321120 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAC
1 GCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
* * * * **
12321185 CAAGGGATGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGG
* * * * *
12321250 CACGATCGTCGGAGCATCATCGGAGACCCTGATCGACGGCATTGGGGTTACGGCGATCGAGGGGG
131 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTACGGCGATCGGGGGGG
*
12321315 CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATC
196 CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
12321380 CCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
261 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
* * **
12321445 AGTAACCATTAAAGTGGCTGAAATGGGGACACTTTTTTCAAATGGTCGTAAAATCTTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
12321510 CGAG-TTTT--TG-------TG-CATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
391 CGAGTTTTTAGTGATTTTTTTGTCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
** * * * *
12321564 TTCAAAACTCTTTTTGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAACATTTTGAAAATCGTGA
456 GCCAAAACAC-TTTCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAA-GTTTCGAAAATCGTGA
* * *
12321628 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGAACCATTGTATGAA
518 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
12321693 TTTACATGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAATCCCACCTACCA
583 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCA
* * * * *
12321758 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTTTGGTCGGTGTAGTG-CCCACCCGCCCGCTA
648 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCACCCGCCCGCTC
*
12321822 GTTTCATCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGT
713 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGT
* * * * *
12321887 TGCGGTAGCAGGATCGACAGCATACAGAGGGAGACCTGACCGATCCCCGGCTTGCGCATCTCACC
777 TGCGGTAGCAAGATCGACAGCACACAGAGGGAGACCCGACCGATCCCCGGCTTGCGAATATCACC
* * *
12321952 CCTTTGGCCGGCTGAGCACCCGCACGCTCTTTTCTTGGGTTGACTTAG
842 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
12322000 GCATACGGAGTTCATTCCCAATCTAAGCATATGAAGTTCATTCCCAGTCTAGGATCAGACTGGAC
1 GCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
* ** * **
12322065 CGAGGGTTGCGACAACACATGCTATGCTCGGGCTTGTGCTGGTGCCATATTTTTCTTCCCCGGGG
66 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGG
* * **
12322130 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGG
131 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTACGGCGATCGGGGGGG
*
12322195 TCAAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
196 -C-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
12322260 TCACTCATCAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
259 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
* *
12322325 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
12322390 TTGGAGTTTTTAGCTGAATTTTTTTGTACGTGCCAAAAAAAATACAGGGATCACATCTACCAAGT
389 TTCGAGTTTTTAG-TG-ATTTTTTTGT-CATGCCAAAAAAAATACAAGGATCACATCTACCAAGT
12322455 TTGGGGCCAAAACACTTTCCGAAAAAATTTTAAAAAATCCTGAACC-TCAGAAAGTTTCGAAAAT
451 TTGGGGCCAAAACACTTT-CGAAAAAATTTTAAAAAATCCTGAACCGT-A-AAAGTTTCGAAAAT
* *
12322519 CATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGT
513 CGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
12322584 ATGAATTTACAAGACATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACGCACC
578 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACC
* * *
12322649 TACCACCCTATCGATCCACGGTTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCC
643 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCCACCC
* *
12322714 GCCCTCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-
705 G----CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAC
*
12322778 TCGGACCGAGGGTTACGGTA
765 T-GGACCGAGGGTTGCGGTA
12322798 ACACATGCTG
Statistics
Matches: 1474, Mismatches: 168, Indels: 82
0.85 0.10 0.05
Matches are distributed among these distances:
880 323 0.22
881 4 0.00
882 186 0.13
883 11 0.01
884 247 0.17
885 2 0.00
886 4 0.00
894 4 0.00
895 4 0.00
896 247 0.17
897 9 0.01
898 185 0.13
899 1 0.00
900 64 0.04
901 2 0.00
903 3 0.00
904 71 0.05
906 1 0.00
911 1 0.00
912 1 0.00
914 103 0.07
915 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGG
CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTACGGCGATCGGGGGGG
CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGTGATTTTTTTGTCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
GCCAAAACACTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAGTTTCGAAAATCGTGAAAA
ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCACCCGCCCGCTCGTT
TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTGCG
GTAGCAAGATCGACAGCACACAGAGGGAGACCCGACCGATCCCCGGCTTGCGAATATCACCCCTC
TGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:12323437 original size:720 final size:717
Alignment explanation
Indices: 12322034--12323577 Score: 2198
Period size: 720 Copynumber: 2.1 Consensus size: 717
12322024 AAGCATATGA
* * * * ** *
12322034 AGTTCATTCCCAGTCTAGGATCAGACTGGACCGAGGGTTGCGACAACACATGCTATGCTCGGGCT
1 AGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTACGATAACACATGCTGGGCTCGGGCA
** * *
12322099 TGTGCTGGTGCCATATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
65 TGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGAAGAACCTGACC
* * * * * *
12322164 GGCGGCATTGGGGTTCCGATGATCGGGGGGGTCAAGGGGGTGTGCGCACATGATGTGTGATGGGT
130 GACGGCATTGGAGTTCCGATGATCGGGGCGGCCAAGGGGGTGTACGCACATGATGTGCGATGGGT
* * * *
12322229 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACCCCCCCTT
195 ACTGGTACTTGACCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12322294 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
* * *
12322359 TTTTTTCAAATGGTCACAAAAACTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTACGTGCC
325 TTTTTTCAAATGGTCACAAAAACTTGTACACTTGCAGATTTTAGCT-AATTTTTTTGTACATGCC
* *
12322424 AAAAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACACTTTCCGAAAAAATTTTAAA
389 AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAA
* *
12322489 AAATCCTGAACCTCAGAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
454 AAATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
* * *
12322554 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATG
519 ACTTCATGTGAAGGCTTAAAGGACCACTGTATAAATTTACAAGACATAAAAATGGCATTGGCATG
* * **
12322619 CAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGTTTGTGCATCCCGT
584 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
* * * *
12322684 CTCTCTGGCCGACGTAGTGCCCACCCACCCGCCC-TCCCGCTCTTTTCGTCGGTTGGCTTAGGCA
649 CTCTCTGGCCGACATAATGCCCACCCACCCGCCCGT-CCGCTCATTTCGTCAGTTGGCTTAGGCA
*
12322748 TACGG
713 AACGG
*
12322753 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAACACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTACGATAACACATGCTGGGCTCGGGCA
* * * **
12322818 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCGTCGAAGAACCTGACC
65 TGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGAAGAACCTGACC
* ** *
12322883 GACGGCATTGGAGTTCTGATGATCGGGGCGGCCGGGGGGGTGGGTCTACGCACATGATGTGCGTT
130 GACGGCATTGGAGTTCCGATGATCGGGGCGGCCAAGGGGGT--G--TACGCACATGATGTGCGAT
* *
12322948 GGGTACTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCC
191 GGGTACTGGTACTTGACCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCC
* *
12323013 CCTTAATGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGG
* * * *
12323078 ACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGCA-ATTTTAGCT-ATTTTTTTTTGCA
321 ACACTTTTTTCAAATGGTCACAAAAACTTGTACA-CTTGCAGATTTTAGCTAATTTTTTTGTACA
* * * * *
12323141 TGCC-AACAAAATACAAGGATCACGTCTACGAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTT
385 TGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTT
* * * *
12323205 TAAAAAATCTTGAACCGT-AAAAAGTTTCAAAAATCATGAAATATAGAAAACGAGTCGTTTTGCC
450 TAAAAAATCCTGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
*
12323269 ATGAAACTTCATGTGAAGGCTTAAAGGACCACTGTATAAATTTACAAGCCATAAAAATGGCATTG
514 ATGAAACTTCATGTGAAGGCTTAAAGGACCACTGTATAAATTTACAAGACATAAAAATGGCATTG
*
12323334 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCACAT
579 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
* * * ** *
12323399 CCCGTCTCTCTGTCTGGCATAATGCCTGCCCGCCCGCCCGTCCGCTCATTTCGTCAGTTGGCTTA
644 CCCGTCTCTCTGGCCGACATAATGCCCACCCACCCGCCCGTCCGCTCATTTCGTCAGTTGGCTTA
*
12323464 GGGAAACGG
709 GGCAAACGG
* * * *
12323473 AGTTCATTCCTAGTCTAAGATCGTACCAGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTACGATAACACATGCTGGGCTCGGGCA
* *
12323538 TGTGCTGGTACCATATTTTTCTTCATTGGGGCACCATCGC
65 TGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGC
12323578 TGGGGGAGGT
Statistics
Matches: 730, Mismatches: 87, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
719 146 0.20
720 386 0.53
721 17 0.02
723 177 0.24
724 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (717 bp):
AGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTACGATAACACATGCTGGGCTCGGGCAT
GTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGAAGAACCTGACCG
ACGGCATTGGAGTTCCGATGATCGGGGCGGCCAAGGGGGTGTACGCACATGATGTGCGATGGGTA
CTGGTACTTGACCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAAACTTGTACACTTGCAGATTTTAGCTAATTTTTTTGTACATGCCAA
AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAA
ATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
TTCATGTGAAGGCTTAAAGGACCACTGTATAAATTTACAAGACATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCT
CTCTGGCCGACATAATGCCCACCCACCCGCCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCAAAC
GG
Found at i:12324084 original size:26 final size:26
Alignment explanation
Indices: 12324055--12324107 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12324045 GTTGACTTAG
* *
12324055 GCATACGGAGTTCACTCCCATTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
12324081 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
12324107 G
1 G
12324108 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:12325478 original size:712 final size:712
Alignment explanation
Indices: 12324081--12325554 Score: 2237
Period size: 712 Copynumber: 2.1 Consensus size: 712
12324071 CCCATTCTAA
* * * * *
12324081 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
** * * *
12324146 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACGATCGTCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCCGAGCATCGTCGAAGA
* * *
12324211 ACCTGACCGGCGGCGTTGCGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCACAGATGATGTGCG
131 ACCTGACCGACGGCATTGCGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCACAGATGATGTGAG
*
12324276 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACGTCGAGAACTCACAC
196 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACAC
* * *
12324341 CCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAATAGCCATTATAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGG
*
12324406 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCGAGTTTTTAGCTGAATTTTTTTGTGC
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCAAGTTTTTAGCTGAATTTTTTTGTGC
*
12324471 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCAATCAAAAAAATTT
391 ATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCAATCAAAAAAATTT
* * * * * * *
12324536 AAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCA
456 AAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCA
*
12324601 TGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
521 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
12324666 CACATAGAAATATGAAGATGTGCCTAAACCCACCAACAACCCTATCGATCCACGGCTTGCACATC
586 CACACAGAAATATGAAGATGTGCCTAAACCCACCAACAACCCTATCGATCCACGGCTTGCACATC
*
12324731 CCGTCTCTCTAGCCGGCATTGTGCCCGCTCGCCCGCCCG-C-TCGTTTCGTCGGTTGGCTTAG
651 CCGTCTCTCTAGCCGGCATAGTG-CCGCTCGCCCGCCCGCCATCGTTTCGTCGGTTGGCTTAG
* *
12324792 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
** * *
12324857 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGTACCATCGCCCGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCCGAGCATCGTCGAAGA
* * **
12324922 ACCTGACCGACGGCATTAG-GGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGC-GTGCATGATGT
131 ACCTGACCGACGGCATT-GCGGTTCCGACGATCGAGGGGCC-GGGGGGTGTGCACAG-ATGATGT
* * *
12324985 GAGATGGGTGCTT-GTACTTGTCCCTTATATTGGCCCCCTATGCC-TTATCAATCCTCGAGAACT
193 GAGATGGGTG-TTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCGTCATCAAACCTCGAGAACT
* *
12325048 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGA
*
12325113 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCAAGTTTTTAGCTGAATTTTT
* **
12325178 TTTTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCAAT-CAAA
* *
12325243 AAAATTTTAAAAAAATCCCAAACCGCAAAATGTTTTAAAAATCATGAAAAATAAAAAACGAGTCA
449 AAAA-TTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCA
12325308 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAA
** * * *
12325373 TGGCATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
577 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACAACCCTATCGATCCACGGC
* * *
12325438 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C-C-CGCCCGCCCGCCCATTCGTTTCGTCGGT
642 TTGCACATCCCGTCTCTCTAGCCGGCATAGTGCCGCTCGCCCGCCCG-CCA-TCGTTTCGTCGGT
12325500 TGGCTTAG
705 TGGCTTAG
* *
12325508 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
12325555 GTGGAAGCAG
Statistics
Matches: 689, Mismatches: 61, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
711 149 0.22
712 183 0.27
713 81 0.12
714 10 0.01
715 109 0.16
716 157 0.23
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCCGAGCATCGTCGAAGA
ACCTGACCGACGGCATTGCGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCACAGATGATGTGAG
ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCAAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCAATCAAAAAAATTT
AAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCAACAACCCTATCGATCCACGGCTTGCACATC
CCGTCTCTCTAGCCGGCATAGTGCCGCTCGCCCGCCCGCCATCGTTTCGTCGGTTGGCTTAG
Found at i:12326551 original size:26 final size:26
Alignment explanation
Indices: 12326515--12326567 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12326505 GTTGACTTAG
12326515 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12326541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12326567 G
1 G
12326568 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12327277 original size:26 final size:26
Alignment explanation
Indices: 12327247--12327299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12327237 GTTGACTTAG
*
12327247 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
12327273 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12327299 G
1 G
12327300 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12327830 original size:723 final size:726
Alignment explanation
Indices: 12326435--12327873 Score: 2093
Period size: 723 Copynumber: 2.0 Consensus size: 726
12326425 GCAGAGGGGG
** * * *
12326435 ACCCGACCGATCCTTGGCTTGCGAATCCCGACCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTT
1 ACCCGACCGATCCCCGGCTTGCGAATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACACTCCTTT
* *
12326500 CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
66 CATGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* *
12326565 AAGATCAGACTGGACCAAGGGATGCGACAGCACATGCTGGGCTCAGGCATGTGCTGCTGCTGCAT
131 AAGATCAGACTGGACCAAGCGATGCGACAGCACATGCTGGGCTCAGGCATGTGCTGCTGCCGCAT
* * * * * *
12326630 TTTTCTTCGTCGGGGCACGATCGCCGGAGCATCTTCGAAGAACCTGACCGGCGGCATTGGGGTTC
196 TTCTATTCGTCAGGGCACCATCGCCGGAGCATCTTCCAAGAACCTGACCGGCGGCATTAGGGTTC
* *
12326695 CGACGATCGGGGGGGCCAAGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
261 CGACGATC---GGGG---AGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTT
*
12326760 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATT
320 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGAGATT
* * *
12326825 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCAC
385 TTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGCGGACACTTTTTTCAAATGGCCAC
* * *
12326890 AAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAACAAAAATACTAGGAT
450 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGAAT
* * * * * *
12326955 CACGTCTACCAAGTTCAGGGCCAAAGCTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAA
515 CACCTCTAACAAGTTCAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAA
* * *
12327020 AATTTTCCAAAAGCATGAAAAATAGAAAATGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTT
580 AAGTTTCAAAAAGCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTT
12327085 AAGGGAACATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
645 AAGGGAACATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
12327150 GCCCAAACACATCTACC
710 GCCCAAACACATCTACC
* * * * * *
12327167 ACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTTTGGTCGGCTGAGCGCCCGCACACTCCTTT
1 ACCCGACCGATCCCCGGCTTGCGAATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACACTCCTTT
** * * *
12327232 CATGCGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTGT
66 CATGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * *
12327297 AAGATCGGA-TCGGACCGAGCGTTTCGGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCGC
131 AAGATCAGACT-GGACCAAGCGATGCGACAGCACATGCTGGGCTCAG-GCATGTGCTGCTGCCGC
* *
12327360 ATTTCTATTTGTCAGGGCACCATCGCTGGAGC-T-TTGCCAGAGAACCTGACCGGCGGCATTAGG
194 ATTTCTATTCGTCAGGGCACCATCGCCGGAGCATCTT-CCA-AGAACCTGACCGGCGGCATTAGG
*
12327423 GTTCCGGCGATC-GGG-GGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTAT
257 GTTCCGACGATCGGGGAGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTAT
* *
12327486 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTT
322 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGAGATTTT
* *
12327551 ACAGGATTGCTG-TAGTAGCCATTAAAGTGTCTAAAATAG-GGACACTTTTTTCAAATGGCCATA
387 ACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GCGGACACTTTTTTCAAATGGCCACA
* * **
12327614 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAGTAAAAATACAAGAATC
451 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGAATC
** *
12327679 ACCTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
516 ACCTCTAACAAGTTCAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAA
* * * *
12327744 GGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
581 AGTTTCAAAAAGCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
12327809 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
646 AGGGAACATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
12327874 GCTAGACCCA
Statistics
Matches: 632, Mismatches: 70, Indels: 19
0.88 0.10 0.03
Matches are distributed among these distances:
723 280 0.44
724 120 0.19
728 3 0.00
730 2 0.00
731 5 0.01
732 222 0.35
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (726 bp):
ACCCGACCGATCCCCGGCTTGCGAATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACACTCCTTT
CATGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACTGGACCAAGCGATGCGACAGCACATGCTGGGCTCAGGCATGTGCTGCTGCCGCAT
TTCTATTCGTCAGGGCACCATCGCCGGAGCATCTTCCAAGAACCTGACCGGCGGCATTAGGGTTC
CGACGATCGGGGAGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAG
GATTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGCGGACACTTTTTTCAAATGGCCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGAATCACCTC
TAACAAGTTCAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTT
CAAAAAGCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
ACATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAA
ACACATCTACC
Found at i:12328168 original size:26 final size:27
Alignment explanation
Indices: 12328128--12328182 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
12328118 CGTGGGTTGA
*
12328128 CTTAGGCATAGGGAGTTCATT-CTCAGT
1 CTTAGGCATACGGAGTTCATTAC-CAGT
12328155 CTTA-GCATACGGAGTTCATTACCAGT
1 CTTAGGCATACGGAGTTCATTACCAGT
12328181 CT
1 CT
12328183 AAAATCAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATTACCAGT
Found at i:12329135 original size:120 final size:120
Alignment explanation
Indices: 12328922--12329147 Score: 364
Period size: 120 Copynumber: 1.9 Consensus size: 120
12328912 TTGACAACAC
*
12328922 GCAGAGAGGGACCCGACCGATTCCCAGCCTGCGCATCCCGCCCCCCTGGCCGGCTGAGCGCCCGC
1 GCAGAGAGGGACCCGACCGATTCCCAGCCTGCGCATCCCGCCCCCCTGGCCGGCTGAGCACCCGC
12328987 ACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTGATTTAAGCAA
66 ACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTGATTTAAGCAA
* * * * **
12329042 GCAGAGGGGGACCCGATCGA-TCCCGGACTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCACCCG
1 GCAGAGAGGGACCCGACCGATTCCCAG-CCTGCGCATCCCGCCCCCCTGGCCGGCTGAGCACCCG
*
12329106 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
65 CACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATT
12329148 TCTAGTCTTA
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
119 5 0.05
120 92 0.95
ACGTcount: A:0.17, C:0.33, G:0.29, T:0.21
Consensus pattern (120 bp):
GCAGAGAGGGACCCGACCGATTCCCAGCCTGCGCATCCCGCCCCCCTGGCCGGCTGAGCACCCGC
ACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTGATTTAAGCAA
Found at i:12329217 original size:883 final size:872
Alignment explanation
Indices: 12327437--12329028 Score: 2189
Period size: 883 Copynumber: 1.8 Consensus size: 872
12327427 CGGCGATCGG
*
12327437 GGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTACGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
12327502 TCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGATTGCTGTAGT
66 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCAGT
* * *
12327567 AGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGCCATAAAATCTTGTACACTTCGA
131 AGCCATTAAAGCGTCTAAAATAGGGACACCTTTTTCAAATGGCCACAAAATCTTGTACACTTCGA
* * * ** **
12327632 GTTTTTAGCTGAATTTTTTTGTGCTTGCCAGTAAAAATACAAGAATCACCTCTAACAAGTTTGGG
196 GTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGAATCACAACTAACAAGTTTGGG
* * *
12327697 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCGTGAA
261 GCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAA
12327762 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** * *
12327827 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAGACCCACCTACCAC
391 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
12327892 CTTATAAATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTCGT
456 CCTATAAATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGT---CGCCCGCCCGCTCGT
* * * * * * *
12327957 TTCGTCGGTTGGCTTAGTCATACAAAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTG
518 TTCGTCAGTTAGCTTAGGCATACAAAGTTCATTCCCAGTCTAACATTAGACCAGACCAAGCGTTA
* * * * ** * *
12328022 CAGCAGCAGGATTGGCAGCATGCAGAGGGGGACCCGGTCGATCCACGGCTTGCGCATCCCGCCCC
583 CAGCAGCAGGATTGACAACACGCAGAGAGGGACCCGACCGATCCACAGCCTGCGCATCCCGCCCC
* * * *
12328087 TCTAGCCTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCTC
648 CCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCTC
* ** * ***
12328152 AGTCTTAGCATACGGAGTTCATTACCAGTCTAAAATCAGACTGGACCGAGGGTTACGACAGCACA
713 AGTCTTAGCATACAGAG-TCAGGACCAGTCTAAAACCAGACTGGACCGACCCTTACG--AGCACA
* * * * * * * ** * *
12328217 TGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCT
775 GGCTGAGCACACGCACGTGCTCGTG-AG-AGTTGACTTCATCGGGGCACCATAGTCGGAG-ACAT
**** ** ** **
12328282 GACCGACGGCATTAGGGTTCCGACGATCGGGGGGCT
837 GACCGACGGCATTACCAATCCGAAAATCGGCCGAAT
** *
12328318 GGGGGTGTACGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTC
1 GGGGGTGTACGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
** * *
12328383 TCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTG-CAG
* * *
12328448 TAGCCATTAAAGCGTCTGAAATAGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
130 TAGCCATTAAAGCGTCTAAAATAGGGACACCTTTTTCAAATGGCCACAAAATCTTGTACACTTCG
* *
12328513 AGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACAACTACCAAGTTTGG
195 AGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGAATCACAACTAACAAGTTTGG
* * * **
12328578 GGCCAAAACTCCATCTGAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATG
260 GGCCAAAACTCCATCCG-AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATG
12328643 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
12328708 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
389 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
12328773 ACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGT-GCCTGCCCGCTCGTT
454 ACCCTATAAATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTCGCCCGCCCGCTCGTT
** * * *
12328837 TCGTCAGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATTGGATCAGACCGAGCGTTAC
519 TCGTCAGTTAGCTTAGGCATACAAAGTTCATTCCCAGTCTAACATTAGACCAGACCAAGCGTTAC
*
12328902 GGCAGCAGGATTGACAACACGCAGAGAGGGACCCGACCGATTCC-CAGCCTGCGCATCCCGCCCC
584 AGCAGCAGGATTGACAACACGCAGAGAGGGACCCGACCGA-TCCACAGCCTGCGCATCCCGCCCC
* *
12328966 CCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTC
648 CCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTC
12329029 CTGATTTAAG
Statistics
Matches: 639, Mismatches: 69, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
879 175 0.27
880 3 0.00
881 117 0.18
882 132 0.21
883 212 0.33
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (872 bp):
GGGGGTGTACGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCAGT
AGCCATTAAAGCGTCTAAAATAGGGACACCTTTTTCAAATGGCCACAAAATCTTGTACACTTCGA
GTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGAATCACAACTAACAAGTTTGGG
GCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATAAATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTCGCCCGCCCGCTCGTTTC
GTCAGTTAGCTTAGGCATACAAAGTTCATTCCCAGTCTAACATTAGACCAGACCAAGCGTTACAG
CAGCAGGATTGACAACACGCAGAGAGGGACCCGACCGATCCACAGCCTGCGCATCCCGCCCCCCT
AGCCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCTCAGT
CTTAGCATACAGAGTCAGGACCAGTCTAAAACCAGACTGGACCGACCCTTACGAGCACAGGCTGA
GCACACGCACGTGCTCGTGAGAGTTGACTTCATCGGGGCACCATAGTCGGAGACATGACCGACGG
CATTACCAATCCGAAAATCGGCCGAAT
Found at i:12330015 original size:26 final size:26
Alignment explanation
Indices: 12329979--12330057 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
12329969 GTTAACTTAG
12329979 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12330005 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12330031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12330057 G
1 G
12330058 ATCGAACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12331395 original size:710 final size:710
Alignment explanation
Indices: 12330031--12331429 Score: 2083
Period size: 710 Copynumber: 2.0 Consensus size: 710
12330021 CCCAGTCTAA
* *
12330031 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATACTGGG
* *
12330096 CTCGGGTATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGAAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGAAGCATCGCCACAGA
** * * * *
12330161 ACCTGACTGGCAGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACAAGATGTG
131 ACCAAACTGGCAGCATTGGGGTTCCGACGATCGGGAGGGTCGGAGGGGTGTGCACACAAGATGTG
* *
12330226 CGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCTTCATCAAACCTCCAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCAC
* *
12330291 ACCCCTTAAAGAGCTTTTGATATTTTACAAGTTTGATGCCAGTCACCATTAAAGTGTCTGAAATG
261 ACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGATGCCAGTCACCATTAAAGTGTCTGAAATG
* * *
12330356 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATGTTTTTGT
326 GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGT
* * * *
12330421 TAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCTGAAAAAA
391 GAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCATCCGAAAAAA
* *
12330486 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCATCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTG
* * * * *
12330551 CCGTGAAACTTGACGGGATGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTGACAGGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCAT
** * *
12330616 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
586 TGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
12330681 ATCCTGTATCCCTGACCGGCGTAGCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
651 ATCCTGTATCCCTGACCGGCGTAGCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
** * *
12330741 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTGCGGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGACAGCACATACTGG
* ****
12330805 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCG-CTGAAGCATCGCCACA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTC-GAAGCATCGCCACA
* * * *
12330869 GAACCAAACCT-GCGGCATTGGGGTTTCGACGATCGGGAGGG-CTGAGGGGTGTGCACACATGAT
129 GAACCAAA-CTGGCAGCATTGGGGTTCCGACGATCGGGAGGGTCGGAGGGGTGTGCACACAAGAT
*
12330932 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACT
* * *
12330997 CACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTG
258 CACACC-CCTTAAAGAGCATTTGAGATTTTACAAGTTTGATGCCAGTCA-CCATTAAAGTGTCTG
* *
12331061 AAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGGTCAAAT-T
321 AAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATGT
** ** *
12331125 TTTTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCATCCG
385 TTTTGTGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCATCCG
** *
12331190 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
450 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
* *
12331255 GTCTTGCCATGAAACTTCG-CATGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAA
515 ATCTTGCCATGAAACTT-GACAGGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAA
* *
12331319 ATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCATGG
579 ATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
12331384 CTTGCGCATCCTGTCTCTCTGGCCGGCGTAGCGCTCGCCCGCCCGC
644 CTTGCGCATCCTGTATCCCTGACCGGCGTAGCGCCCGCCCGCCCGC
12331430 CCGCCTACTC
Statistics
Matches: 615, Mismatches: 67, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
709 89 0.14
710 520 0.85
711 6 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATACTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGAAGCATCGCCACAGA
ACCAAACTGGCAGCATTGGGGTTCCGACGATCGGGAGGGTCGGAGGGGTGTGCACACAAGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCAC
ACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGATGCCAGTCACCATTAAAGTGTCTGAAATG
GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGT
GAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCATCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTG
CCATGAAACTTGACAGGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCTGTATCCCTGACCGGCGTAGCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:12331623 original size:26 final size:26
Alignment explanation
Indices: 12331587--12331637 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12331577 CTGACTTAGG
12331587 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
12331613 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
12331638 GATCGGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:12332422 original size:869 final size:881
Alignment explanation
Indices: 12330742--12333077 Score: 3051
Period size: 869 Copynumber: 2.7 Consensus size: 881
12330732 TTGGCTTAGG
* * *
12330742 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATACTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GAACCGAGGGTTGCGGCAGCACATGCTGGGC
** * **
12330807 TCGGGCATGTGCTGGTG-TCGCATTTTTCTTCGTTGGGGCACCATCGCTGAAGCATCGCCACAGA
65 TCGGGCATGTGCTGGTGCT-GCATTTTTCTTCACT-GGGCACCATCGCCGAAGCATCGCCGGAGA
** * * *
12330871 ACCAAACCTG-CGGCATTGGGGTTTCGACGATCGGGAGGGCTGAGGGGTGTGCACACATGATGTG
128 ACCTGACC-GACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTG
*
12330935 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
12331000 ACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
12331065 GGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGGTCAAATTTTTTG
321 GGGGACAC-TTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12331130 TGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCATCCGAAAAA
385 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
12331195 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
450 ATTTTAAAAAATCCC-AACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12331260 GCCATGAAACTTCGCATGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12331325 TTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCATGGCTTGCG
579 TTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCG
* * * * *
12331390 CATCCTGTCTCTCTGGCCGGCGTAGCGCTCGCCCGCCCGCCCGCCTACTCGTTTCGTTGGTTGGC
644 CATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCCCCCGCCCGCCTACTCGTTTCGTCGGTTGGC
* * * ** * *
12331455 TTAGGCATACAAAGTTCATTTCCAGTTTGAGATTGGACTGGATGGAGGGTTACGATAGCAGGATC
709 TTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTACGACAGCAGGATC
* * * *
12331520 GACAGCACGTAGAGGGGGACCCGGTAGATCCCCGGCTT-AC-GT-A-T-G-C-C-GC-CCC-TCA
774 GACAGAACGTAGAGGGGGACCCGATAGATCCCCGGCTTCACACTCACTGGCCGCAGCGCCCGTAA
12331575 G-G-C-T-G-ACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
839 GCGTCGTGGTACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
12331613 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGAACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
12331678 TTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGTGCCCCATCGCCGGAGCATCGCCGGAGAA
65 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCACTGG-GCACCATCGCCGAAGCATCGCCGGAGAA
* *
12331743 CCTGACCGATGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
129 CCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
* *
12331808 ATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
12331873 CCCTTAAAGAGCATTTGAGATTTTAACAGG-TTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCTTAAAGAGCATTTGAGATTTT-ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
12331936 GGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACAC-TTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *** *
12332001 CATGCCAACAAGGGTACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
387 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
12332066 TTTAAAACATCCCATATCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCCCA-ACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
12332131 CATGAAACTTCACGTGAAGGCCTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATT
516 CATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
12332196 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCA
581 GGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCA
* *
12332261 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTT
646 TCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCCCCCGCCCGCCTACTCGTTTCGTCGGTTGGCTT
** * ** * *
12332326 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGTGACAGCAGGTTCGG
711 AGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTACGACAGCAGGATCGA
* *
12332391 CAGAACGTAGAGGGGGATCCGATCGATCCCCGGCTTGCACATCTCACCCTTCTGGCCGGCTGAGC
776 CAGAACGTAGAGGGGGACCCGATAGATCCCCGGCTT-CACA-CTCA-----CTGGCC-GC--AGC
*
12332456 GCCCGTAAGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
831 GCCCGTAAG--CG--TCGT-GG-T-ACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
* * * *
12332514 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCACCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACGA-ACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * *
12332579 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGCAGCATCGTCGTAGCATCACCGGAGAA
65 TCGGGCATGTGCTGGTGCTGCATTTTTCTTC-ACTGGGCACCATCGCCGAAGCATCGCCGGAGAA
* * * * * *
12332644 CCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGTGCCGGGGGGGCTGTGCGCACATGATGTA
129 CCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGG-TGTGCACACATGATGTG
* * * *
12332709 TGATGGGTGCTGGTACTTGGCCCTTATGTTGACCCACTATCCCTCATCAAACCTCAAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
12332774 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAAT
257 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12332839 GGGGACAC--TTT----T--TT-C-AAA-C---T----TT-GAGTTTTTAGCTGAATTTTTTTGT
321 GGGGACACTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * *
12332885 GCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGTTCCAAAAGTCCATT-TGAAAAA
386 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAA
** *
12332949 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTT
450 ATTTTAAAAAATCCC-AACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12333014 GCCATGAAACTTCACGAGAAGGCTTGAGGGAT-CATTGTATGAGTTTACAAGCCCTAAAAATGGC
514 GCCATGAAACTTCACGTGAAGGCTTAAGGG-TCCATTGTATGAATTTACAAGCCATAAAAATGGC
12333078 TTGTGCATCC
Statistics
Matches: 1289, Mismatches: 128, Indels: 82
0.86 0.09 0.05
Matches are distributed among these distances:
868 1 0.00
869 463 0.36
870 32 0.02
871 237 0.18
872 2 0.00
873 1 0.00
874 1 0.00
880 1 0.00
881 1 0.00
882 1 0.00
884 1 0.00
885 189 0.15
886 6 0.00
887 2 0.00
888 3 0.00
889 3 0.00
890 1 0.00
892 1 0.00
893 1 0.00
894 3 0.00
895 2 0.00
896 3 0.00
898 2 0.00
900 2 0.00
901 176 0.14
902 12 0.01
903 80 0.06
904 30 0.02
905 32 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCTGCATTTTTCTTCACTGGGCACCATCGCCGAAGCATCGCCGGAGAACC
TGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGCGCCCGCCCCCCCGCCCGCCTACTCGTTTCGTCGGTTGGCTTAGGCA
TACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTACGACAGCAGGATCGACAGAA
CGTAGAGGGGGACCCGATAGATCCCCGGCTTCACACTCACTGGCCGCAGCGCCCGTAAGCGTCGT
GGTACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
Found at i:12332523 original size:26 final size:26
Alignment explanation
Indices: 12332487--12332539 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12332477 GTTCACTTAG
12332487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12332513 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12332539 G
1 G
12332540 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12333948 original size:26 final size:26
Alignment explanation
Indices: 12333912--12333962 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12333902 TGACTTAGGG
12333912 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
12333938 ATACGGTGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12333963 ATCGGACGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:12336647 original size:26 final size:26
Alignment explanation
Indices: 12336607--12336659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12336597 GTTGATTTAG
*
12336607 GCATACGGAGATCATTCCCAATCTAA
1 GCATACGAAGATCATTCCCAATCTAA
* *
12336633 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGATCATTCCCAATCTAA
12336659 G
1 G
12336660 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGATCATTCCCAATCTAA
Found at i:12338457 original size:159 final size:159
Alignment explanation
Indices: 12338190--12338566 Score: 425
Period size: 159 Copynumber: 2.4 Consensus size: 159
12338180 GCGTAATGCC
* * * * * *
12338190 CGCCCGCCCGTTCATTTCGTCGGTT-AGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATTGC
1 CGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGC
* * * ** * ***
12338254 ATCGGACCGAGTGCTGCGGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGGTTGAT-CTCCGA
65 ACCGGACCAAGGGCTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCT-CGA
** * ** *
12338318 CTTTCGCATCCCGCCCCTCTGGTCGGCTGAG
129 CTCACGCATCCCGCCCCTCTGGCCAACTGAA
* *
12338349 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATTGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGCA
* * * * * *
12338414 CCGGACCAAGGGTTGCGACAGCATGATCGGCAGCATGCTGAGGGGGACCCGACCGATCCTCGGCT
66 CCGGACCAAGGGCTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGACT
* *
12338479 CACGTATCCCTCCCCTCTGGCCAACTGAA
131 CACGCATCCCGCCCCTCTGGCCAACTGAA
* *
12338508 CACCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12338567 CATACGGAGT
Statistics
Matches: 182, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
159 179 0.98
160 3 0.02
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (159 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGCA
CCGGACCAAGGGCTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGACT
CACGCATCCCGCCCCTCTGGCCAACTGAA
Found at i:12338569 original size:26 final size:26
Alignment explanation
Indices: 12338540--12338592 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12338530 GTTGACTTAG
*
12338540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12338566 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12338592 G
1 G
12338593 ATCAAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12341158 original size:26 final size:26
Alignment explanation
Indices: 12341122--12341174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12341112 GTTGACTTAG
*
12341122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
12341148 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
12341174 G
1 G
12341175 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:12342042 original size:26 final size:26
Alignment explanation
Indices: 12342006--12342056 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12341996 TGACTTAGGC
*
12342006 ATATGGAGTTCATTCCCAATCTAAGT
1 ATATAGAGTTCATTCCCAATCTAAGT
* *
12342032 ATATAGAGTTCATTGCCAGTCTAAG
1 ATATAGAGTTCATTCCCAATCTAAG
12342057 ATCGGACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (26 bp):
ATATAGAGTTCATTCCCAATCTAAGT
Found at i:12342944 original size:26 final size:26
Alignment explanation
Indices: 12342908--12342958 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12342898 TTGACTTAGG
*
12342908 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTACCAGTCTAAA
*
12342934 CATATGGAGTTCATTACCAGTCTAA
1 CATACGGAGTTCATTACCAGTCTAA
12342959 GATTGGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTACCAGTCTAAA
Found at i:12343372 original size:892 final size:888
Alignment explanation
Indices: 12339094--12349448 Score: 12117
Period size: 903 Copynumber: 11.6 Consensus size: 888
12339084 AGAAAATTGC
* * * *
12339094 GAAATATGAGGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTACGCATCCCATTT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
* ** * * *
12339159 TTCTGGCCGGTATAGTGCCCACCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
66 CTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * ** *
12339224 GAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGT
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * **
12339289 AGAAGGGGACCCGACCGATCCCCGGATTACGCATCCCACCCCTCTGGCCGGCTGAGCGCTTGCAC
195 AGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
** * * *
12339354 GCTCGTTTTATGGGTTGACTTACGCATACGAAGTTCATTCCCAGTCTAAGTATATGGAGTTCATT
259 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* ** * * *
12339419 CCCAGTCTAAGATCGGATCGGACCGAGGGTTACAACAGCAAATGCTGGGCTCTGGCGTGTGCTGG
324 -CCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* *** * * *
12339484 TGCCGCATTTTTCTTC-ACTGGGGCA-CATTATC-G-G-A-C-AG-T------ATTGGGGATCCA
387 TGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGAACCTGGCTGGCGGCATTGGGGTTCCG
* * * * *
12339535 ACAATCGGGGGGGTCGGGAGGGGTGTGCGCACTTGATGTGCGATGGGTGATGGTACTTGCCCCTT
451 ACGATCGGGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
12339600 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGCACTCACACCCCCTTAAAGAGCATTTGAGATT
514 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
12339665 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
579 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
12339730 AAAATCTTGTACACTTCTAGTTTTTAGGTGAATTGTTTTGTGCATGCCAACAAAGATACAAGGAT
644 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
12339795 CACGTCTACCGAGTTTGGGGCCAAAACTCCTTCT-AAAAATATTTTGAAAAATCCCGAACTGCAA
709 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAAATCCCGAACCGTAA
*
12339859 AAAGTTTC-AAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
773 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
12339923 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
838 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
12339974 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTACGCATCCTGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
* * ** *
12340039 CTCTGACCGGCGTAGTGCCCGCCCACCCGTTCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATAC
66 CTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * *
12340104 AAAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGACAGTAGCATCGGCAGCACG
130 GGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * ** * * * * *
12340168 CAGACGGTGACCCGGTTGATCCCCGGCTTCCGCATCCCGTCGCTCTGGTCGACTGAGCGCCCGCA
194 CAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
12340233 CGCTCGTTTCGTGGCTTAACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATATTGCGTTCAT
258 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
** * ** ** *
12340298 TCCTAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCACATGCTTTGCTCAAGCATGTGCTA
323 TCC-AGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
12340363 GTTCCGCATTTTTCTTC-ACTGGGCA-CAT------------T-GTTGGACGGCATTGGGGTTCC
386 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGGCTGG-CGGCATTGGGGTTCC
*
12340413 GACGATCGGGGGGGTCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
450 GACGATCGGGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
12340478 TATATTGGCTCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
513 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
12340543 TTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCA
578 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* ** *
12340608 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTAAGCATGCCAACAACAATACAAGGA
643 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
12340673 TCATGTCTTCCAGGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCTCAAACCGTA
708 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTA
** * **
12340737 AAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCA-GTTGAAAT
772 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG-TGAAGG
*
12340801 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
836 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
12340854 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
* * ** * * *
12340919 CTCTGG-C--CG-A---------C-CCGCCTGCCCACTTATTTCGTCAGTTGGCTTAAGCATATG
66 CTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
12340970 GAGTTCATTCCCAGTCCAAGAT-AGGACCAGACCAAGGGTTGCGGTAGCAAGATTGGCAGCACGC
131 GAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * *
12341034 AGAGGGGGACCCAGCCGATCCCCGGTTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCAC
195 AGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
12341099 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
259 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* * * * * * **
12341164 ACCAGTCTAAGATCGGATCAGATCGAGGGTTACGGTAGAACATGTTGGGCTCGAACAT-TCGCTG
324 -CCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT-GCTG
* * ** * * * * * * *
12341228 GTGCCGGATTTCTCTTCACCGGGGCACCATCGCTGGATAACCTGGCCGACGGCGTTGGGTTTTCG
386 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGGCTGGCGGCATTGGGGTTCCG
* * *
12341293 ACGATCGGGGGGGCCGGGGGGGGTGTACGCACATGATGGGTGATGGGTGCTGGTACTTGGCCCTT
451 ACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
** * * * *
12341358 ATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACCCACACCCTCTTAAAGATCATTTCAGATT
514 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
12341423 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAA
579 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
12341488 AAAATCTTGTACACTTCCAGTTTGTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGAT
644 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
12341553 CATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAA
709 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * * *
12341618 AAGTTTTAAAAATCATGAAAAATAGAAAGCGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTT
774 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
12341683 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCATGCA
839 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
12341733 GAAATATGAAGCTGTACCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
* * * *
12341798 CTCTGGTCGGCGTAGTGCCCGCCTGCACTCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
66 CTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
12341863 GAAGTTCATTCCCAGTCTGAGATCGGACCGGACCGAGGGTT----------G-T-GGTAGCATGC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* ** * * * *
12341916 AGAGGGGGACCCGATCGATCCCCAACTTACGCATCCCGCCCTTCTGGCCGGCTGAACACCCGCAC
195 AGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
12341981 GTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGTATATAGAGTTCATT
259 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* *
12342046 GCCAGTCTAAGATCGGACGAGACCGAGGGTTGCGACAGCACATGCTGAGCTCGGGCATGTGCTGG
324 -CCAGTCTAAGATCGGACG-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * *
12342111 TGTCGTATTTTTCTTCGTCGGCGCACCATCACCGGAGCCTTGCTAGAGAACCTGACCGGTGGCGT
387 TGCCGCATTTTTCTTCGTCGGGGCACCAT---C---GCC--G---GAGAACCTGGCTGGCGGCAT
* * ** **
12342176 TGGGGTTTCGGCGATCAAGGGGGTTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
441 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
12342241 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACACACACCCCCTTAAAGAGCAT
506 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
12342306 TTGAGATTTTACAGATTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTTCAA
571 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
12342371 ATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCTACCAA-AAGAAA
636 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA-AAA
* * * * * * **
12342435 TACAAGGATGACGTCTACCAAGTTTAGGGCTAAAAATCTTTCTGAAAAAAGTTTAAAAAATCTTG
700 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
* * *
12342500 AACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACG
765 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
12342565 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
830 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * * * *
12342624 GAAATATGAAGATGTGCCTAAACCAACCTACTACGCTATCGATCCATGGCTTGCGCATCCAGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
* *
12342689 TTCTGGCCGGCGTAGTCCCCGCCCGCACGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
66 CTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
12342754 GGAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATTGGCAGCATGT
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * *
12342819 AGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGATCGCCCGCAC
195 AGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
** *
12342884 GCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGGAGTTCATT
259 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* * * * *
12342949 ACCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGCAGAACATGCTGGGCTCGGGCAT-TCCTTG
324 -CCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC-TG
* * * * *
12343013 GGGCTAG-ATTTTTCTTCGTCGGGGCACCATCGCCGGATAACCTGGCTGGCGGCATTGTGTTTCC
386 GTGC-CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGGCTGGCGGCATTGGGGTTCC
* *
12343077 GACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGGGCGATGGGTGCTGGTACTTGGCCCTTA
450 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
12343142 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
515 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
12343207 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAGTTTTTTCAAATGGTCAAA
580 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
12343272 AAATCTTGTACACTTTGAGTTTTTTGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
645 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
12343337 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
710 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * * *
12343402 AGTTTTAAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACATGAAGTCTTA
775 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
12343467 AGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GACA
840 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG-CA
* * *
12343516 GAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
*
12343581 CTCTGGCCGGCGTAGTGCCCGCCCGCACGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
66 CTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * * *
12343646 GGAGTTCATTCCAAGTCTAAGATGGGACCGGACTGAGGGTTGTGGCAGTAGGATCCGCAGCATGC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * *
12343711 AGAGGGGGACCTAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAC
195 AGAGGGGGACC-CGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
12343776 GCTCATTTTGTGGGTTGACTTAGGCATACGGATTTCATTCCCAG--T---C-TA---AG---A-T
259 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* *
12343828 -C-G-----GA-C---CGGACCGAGGATTGCTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
324 CCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* *
12343882 CCACATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCGTCGGAGAACCT-GATCGGCGGCATT
389 CCGCATTTTTCTTCGTCGGGGCACCAT--C----G---C--CGGAGAACCTGGCT-GGCGGCATT
* * * * * * *
12343946 TGGGTTCCGGCGATCGGGGGGGTCAGGGAGTGTGCACACATGATGTGTGATGGGTGCTGGTACTT
442 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
12344011 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
507 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
12344076 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
572 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
12344141 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
637 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * ** * *
12344206 CAAGGATCATGTTTACCAAGTTTGGCACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAA
702 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAA
* * * *
12344271 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGCAACTTCACATG
767 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
12344336 AAGGCTTAAGGGACCATTGTATGAATTT-CAAAGCCATAAAAAAGGCATTGGCACACA
832 AAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACGCA
* * * *
12344393 AAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTCACGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
* * * *
12344458 CTCTGGCCGGAGTAGTGCCCGCCCACCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATAC
66 CTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
12344523 GGATTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGTGGCAGCAGGATCGACAGCATGC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * *
12344588 AGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCAC
195 AGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
12344653 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGGTGTTCATT
259 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* * * ** **
12344718 CCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGATTTTACGCTCGGGCATGTGCTGG
324 -CCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
12344783 TGCCGTATTTTTCTTCGTCGAGGCTCCATCGTCGGAGCATCACTGGAGAACCTGATCGGCGGCAT
387 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-AAC-CT-G-G---C---T-GGCGGCAT
* * *
12344848 TGGGGTTCCAACGATCGGGGGGGCTGGGGGGGATTGTGCGCACATGATGTGTGATGGGTGCTGGT
441 TGGGGTTCCGACGATCGGGGGGGC-CGGGGGG--TGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
12344913 ACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTGAAAGAG
503 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
12344977 CATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTT
568 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
12345042 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAA
633 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
12345107 AATACAAGGATCACGTCTACCAAGTTTGGGG-TAAAACTTCTT-TCGAAAAAATTTTAAAAAATC
698 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATC
* * *
12345170 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCTTCTTGCCTTGAAACTTC
762 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
12345235 ACGTGAAGACTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
827 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
12345297 -AAATTGTGGAGATGTGCCTATACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTC
1 GAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
* ** * * *
12345361 TC-CTTGGCCGGTGTAGTG-CC-TAC-CCGCCCACCCACTCGTTTCGTCGATTGGCTTAGGCATA
65 TCTC-TGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * ** * * *
12345422 TGGAGTTCATTCCCAGTCTAAGATTGGACCAGAGTGAGGTTTGCAGCAGCAGGATCGGTAGCACG
129 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * * * *
12345487 TAGAGAGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCAGCTAAGCGCCTGCA
194 CAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
12345552 CGCTAGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTAAGCATACGGAGTTCAT
258 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * * ** * *
12345616 TCCCAATCTAAGGTCAGACTGGAGCGAGGGTTGCGGCAGTGCATGCTAGGCTCGAGCATGTGCTG
323 T-CCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** * * * * * * * *
12345681 GTGCCGCATTTTTCTTCACCGAGGCACCATTGCCGGAGCATC-GTC-GGAGAACCTTACCGACGG
386 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGGCTGGCG-GCATT---G--GG
* * * *
12345744 TGTTCTTTCGATGAT-TGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
445 -GTTC---CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
12345808 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
506 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
12345873 TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAA
571 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
12345938 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
636 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* ** * * * * *
12346003 AAAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAAAATTTTAAAAACTCTCAA
701 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGA
* * * * * * *
12346068 ACTGTAAAAAGTTTCGACAATCGTGAAAAATAGAAAACGTGTTGTTTTGCCATGAAACTTCACAT
766 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
12346133 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGCA
831 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
12346191 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
** * * * *
12346256 CTCAAGCTGGCGTAGT----G--C-CCGCCCGCCCACTCATTTCGTCAGTTGGCTTAGGCATACG
66 CTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * *
12346314 GAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGCGATAGTAGGATTGGCAGCACGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * * * * * *
12346379 GAGGGGGAACCGATCGATCCTCAGCTTACGCATACCGCCCCTCTGGCAGGCTGAGCGACCACACG
196 GAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * *
12346444 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGGTCATTC
260 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
* * ** *
12346509 TTAGTCTAAGATCGGATTGGAGTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
325 -CAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
12346574 GCCGCATTTTTCTTCGACGGGGAACTATCACCGGACCATCGCCGGAGAACCTGACCGGCGGCGTT
388 GCCGCATTTTTCTTCGTCGGGG---------C--ACCATCGCCGGAGAACCTGGCTGGCGGCATT
* * * *
12346639 -GGTTTCCTG-CGAT-TGGGGCGCCGGGGAGTGTGCCGCACATGATGTGCGATGGGTGCTGGTAC
442 GGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTG-CGCACATGATGTGCGATGGGTGCTGGTAC
* * *
12346701 TTGGCCCTTTTATTGGCCCCGCTAT-CCTCATCAAACCTCGAGAACTTACACCCCATATAAAGAA
505 TTGGCCCTTATATTGGCCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCT-TAAAG-A
* * *
12346765 GCATTTTGAGATTTTACCAGGTTTGTTGGCCTGTAGCCATTAAAGTGTTTTGAAATGGGGACACT
567 GCA-TTTGAGATTTTA-CAGGTTTGCT-GCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACT
* *
12346830 TTTTTCAAAATGGTC-CTAAATCTTGTACAC-TCAAGTTTTTATGCTGAATGTTTGTTTGTGCAT
628 TTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAAT-TTT-TTTGTGCAT
* ** * *
12346893 GCCGAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGGTAAAACTTCTTCCGAAAAAATTT
689 GCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* * * * * * * *
12346958 TAAAAAATCTCGAACAGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGTGTCTTCCTGCCA
753 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
12347023 TGAACCTTCACTTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGG
818 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
12347088 CATGCA
883 CACGCA
* * * *
12347094 -AAATTATGAATATGTGCCTAAACCCACCAATCACCCTATCGATCCACGGCTTTCGCATCCCGTC
1 GAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
* * *
12347158 TCTCTGGCCGGTGTAGTGCCCGCCCGCC-CAC-CCC-CTCGTTTCGTCGATTGGCTTAGGCATAC
65 TCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * * * *
12347220 AGAGTTCATTCCCAATCTAAGATCAGATTGGAGCAAGGGTTGCAGTAGCAGGATCGGTAGCACGC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * *
12347285 AGAGAGGGACCCGACCGATCCTCGGCTTG-GCATCCCGCCCCTCTGGCCGGCTGGGCGCCAGCAC
195 AGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
12347349 GCTAGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
259 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* * * * *
12347414 CCAATCTAAGATCGGACTGGAGCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTAGT
324 CCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * * * **
12347479 GCCGCATTTTTCTTTGTCGGGGCACCATTGCCAGAGCATC-GTC-GG-AGCATCGCCGGAGAACC
388 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGGCTGGCGGCATTG--GG-GTTCC
* * ** * * * *
12347541 TA--A-C--CGACGACAGGGGGTTTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTA
450 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
12347601 TATTGGCCCTTTTATTGGCCCTCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAG
515 TATTGG--C---------CCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
12347666 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTT
568 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
12347731 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATG-CAACAAG
633 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
12347795 AATACAAGGATCACGTCTACCTAG--TCGCGACAAAACTCCTTCCG-AAAAATTTTAAAAAATCC
698 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* *
12347857 CGAACCGTAAAAAG-TT-AAAAATCATGAAAAATAGAAAACGACTCGTCTTG-CATGAAACTTCA
763 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
12347919 CGTGAA-GCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCAAGCA
828 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
12347979 -AAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTTCGCATCTCGTC
1 GAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
* * * * * *
12348043 TCTCTAGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGTATA
65 TCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * * * * * * *
12348108 CAGAGTTAATTCCCAACCTAATATCAGAACGGATCGAGGGTTGTGGTAGCAGGATCAGCAGCATG
129 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* ** * * * *
12348173 TAGAGGGGGACCCAGTTGATCCCCGGCTTGCGTATCCTGCCCCTCTGGCCGACTGAGCGCCTGCA
194 CAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* **
12348238 CGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
258 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * * *
12348303 TCCGAGTCTAAGATCAGACCGGACCGAGAGTTGTGGTAGCACATGCTGGGCTCGAGCATGTGCTG
323 TCC-AGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * ** *
12348368 GTGCCACATTTTTCGTCAT-GGGGCACCATCGCTGGAGCATCGCCGGAGAACCTAACTGGCAGCA
386 GTGCCGCATTTTTCTTCGTCGGGG---CA---C-----CATCGCCGGAGAACCTGGCTGGCGGCA
* * * *
12348432 TTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTTGTA
440 TTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
12348497 CTTGGCCTTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
504 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
12348562 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTC
569 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
** * * * *
12348627 AAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCGGATTTTTTTTATGCATGCCAAAAAAA
634 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*
12348692 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTT-TCGAAAAAATTTTAAAAAATCC
699 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCC
** * * **
12348756 TAAACTGGAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
763 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
12348821 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAACT-GCATTGGCACGTA
828 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCACGCA
*** *
12348882 GAAATATGAAGATGTGCCTAAACCCATAGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
* * *
12348947 CTCTGGCCGACGTAGTGCCCGCCCGCACGCCCGCCCGCTCTTTTCATCGGTTGGCTTAGGCATAC
66 CTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
12349012 GGAGTTCATTTCCAATCTAAGATCAGAGCAGACCGAGGGTTACGGCAACAGGATCGGCAGCACGC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * ** * * * *
12349077 AGAGGGTGACCCGGCCGATCCCCGTCTTATGCATCCCACCCCTCTGGCCGGTTGAGAGCCCACAC
195 AGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * ** * * * *
12349142 GTTCATTTCACGGGTTGACTTAGGCATATGGGGTTCATTCCCAGTCTCAGCATGTGGAGTTCATT
259 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* * ** * *
12349207 CCTAGTCTATGATCGGACCGGACCGAGGGTTGTGATAGCATATGCTGGGCTCGGGCATGTGCTCG
324 CC-AGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * ** * * * * *
12349272 TGTCGTATTTTTCTTCG-CCGGG--CCATCATCGGAGAACCTGACCGGCGGCATTGTGGTTCTGG
387 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGGCTGGCGGCATTGGGGTTCCGA
12349334 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
452 CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
12349399 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAG
516 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
12349449 TATCTAAAAT
Statistics
Matches: 8172, Mismatches: 1034, Indels: 528
0.84 0.11 0.05
Matches are distributed among these distances:
864 1 0.00
865 253 0.03
866 72 0.01
867 6 0.00
868 1 0.00
871 3 0.00
872 2 0.00
875 1 0.00
876 6 0.00
877 700 0.09
878 3 0.00
879 798 0.10
880 520 0.06
881 3 0.00
882 197 0.02
883 7 0.00
884 1 0.00
885 136 0.02
886 22 0.00
887 35 0.00
888 6 0.00
889 131 0.02
890 473 0.06
891 717 0.09
892 807 0.10
893 249 0.03
894 380 0.05
895 191 0.02
896 87 0.01
897 47 0.01
898 33 0.00
899 174 0.02
900 226 0.03
901 71 0.01
902 83 0.01
903 929 0.11
904 230 0.03
905 252 0.03
906 160 0.02
907 151 0.02
908 3 0.00
909 3 0.00
910 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
AGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGGCTGGCGGCATTGGGGTTCCGACGAT
CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
Found at i:12345604 original size:25 final size:26
Alignment explanation
Indices: 12345576--12345627 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
12345566 GTTGACTTAG
12345576 GCATACGGAGTTCATT-CCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12345601 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12345627 G
1 G
12345628 GTCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12346506 original size:26 final size:26
Alignment explanation
Indices: 12346466--12346518 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12346456 GTTGACTTAG
*
12346466 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGGTCATTCCTAGTCTAA
* *
12346492 GCATACGGAGGTCATTCTTAGTCTAA
1 GCATACAGAGGTCATTCCTAGTCTAA
12346518 G
1 G
12346519 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCTAGTCTAA
Found at i:12347401 original size:26 final size:25
Alignment explanation
Indices: 12347372--12347423 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12347362 GTTGACTTAG
* *
12347372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATT-CCAATCTAA
12347398 GCATACGAAGTTCATTCCAATCTAA
1 GCATACGAAGTTCATTCCAATCTAA
12347423 G
1 G
12347424 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAATCTAA
Found at i:12347608 original size:12 final size:12
Alignment explanation
Indices: 12347591--12347622 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
12347581 GTGCTGGTAC
12347591 TTGGCCCTTATA
1 TTGGCCCTTATA
*
12347603 TTGGCCCTTTTA
1 TTGGCCCTTATA
12347615 TTGGCCCT
1 TTGGCCCT
12347623 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.28, G:0.19, T:0.44
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:12348298 original size:26 final size:26
Alignment explanation
Indices: 12348262--12348314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12348252 GTTAACTTAG
*
12348262 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12348288 GCATACAGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12348314 G
1 G
12348315 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12349194 original size:26 final size:26
Alignment explanation
Indices: 12349165--12349214 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12349155 GTTGACTTAG
*
12349165 GCATATGGGGTTCATTCCCAGTCTCA
1 GCATATGGAGTTCATTCCCAGTCTCA
* *
12349191 GCATGTGGAGTTCATTCCTAGTCT
1 GCATATGGAGTTCATTCCCAGTCT
12349215 ATGATCGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTCA
Found at i:12352660 original size:258 final size:260
Alignment explanation
Indices: 12352164--12352682 Score: 853
Period size: 258 Copynumber: 2.0 Consensus size: 260
12352154 GGGCTCGAGT
* * *
12352164 ATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
1 ATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* *
12352229 CGACGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGGTAGTGCGCACATGATGTGCGATGG
66 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTAGTGCGCACATGATGTGCAATGG
* *
12352294 GTGCTGGTACTCGGCCTTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGACGTCACACCCCC
131 GTGCTGGTACTCGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGACGTCACACCCCC
*
12352359 TTAAAGAGCATTTGAGATTTTAGAAGTTTGCTGCCAATAGCCATTAAAATGTCTAAAATGGGGAC
196 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAATGTCTAAAATGGGGAC
*
12352424 ATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
1 ATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* ** *
12352489 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGGT-GTGCGCACATTATGTGCAAT-G
66 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTAGTGCGCACATGATGTGCAATGG
* *
12352552 GTGCTGGTACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGATGTCACACCCCC
131 GTGCTGGTACTCGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGACGTCACACCCCC
* * * *
12352617 TTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
196 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAATGTCTAAAATGGGGAC
12352682 A
1 A
12352683 CTTTTTTCAA
Statistics
Matches: 240, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
258 123 0.51
259 18 0.08
260 99 0.41
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (260 bp):
ATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTAGTGCGCACATGATGTGCAATGG
GTGCTGGTACTCGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGACGTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAATGTCTAAAATGGGGAC
Found at i:12353262 original size:116 final size:116
Alignment explanation
Indices: 12353057--12353274 Score: 265
Period size: 116 Copynumber: 1.9 Consensus size: 116
12353047 ATTTTGTTTG
* * * * * *
12353057 TTGGCATAGGCTTACAGAGTTCATTCCTAGTCTAAGATCAGATCAAACCAAGGGTTGCGGTAGCA
1 TTGGCATAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCAAGGGTTGCGGCACCA
** * *
12353122 GGATCGGTAGCACGCAGAGTGGGACCCGACTGATCCCGTTCGTTTCGTCAA
66 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCGTTCGTTTCGTCAA
* * ** * **
12353173 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTTAGGGTTGCGGCACCA
1 TTGGCATAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCAAGGGTTGCGGCACCA
* *
12353238 GGATCGACAGCATGTAGAGGGGGACCCGACCGATCCC
66 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCC
12353275 CGGCTTGCGC
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
116 83 1.00
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (116 bp):
TTGGCATAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCAAGGGTTGCGGCACCA
GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCGTTCGTTTCGTCAA
Found at i:12355172 original size:26 final size:26
Alignment explanation
Indices: 12355142--12355194 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12355132 GTTGTCTTAG
* *
12355142 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12355168 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12355194 G
1 G
12355195 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12356079 original size:26 final size:26
Alignment explanation
Indices: 12356039--12356091 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12356029 GTTGACTTAG
*
12356039 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
12356065 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12356091 G
1 G
12356092 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:12356479 original size:901 final size:900
Alignment explanation
Indices: 12353156--12361256 Score: 10461
Period size: 904 Copynumber: 9.1 Consensus size: 900
12353146 CCCGACTGAT
* * * **
12353156 CCCGTTCGTTTCGTCAATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGAC
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
** * * * * * *
12353221 TTAGGGTTGCGGCACCAGGATCGACAGCATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
66 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCA
* * * ** **
12353286 TCCCGCCCCTCTGGCATG-TTAAGCGCCCGCACGCTAATTTTGTGGGTTGACTTAGGCATATAGA
131 TCCCGCCCCTCTGGC-CGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGA
* * *
12353350 GTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAAATCAAACCGGACCAAGGGTTG
195 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * * * *
12353414 CGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCAC
260 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC
* * *
12353479 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGTCGATCTGGGGGGCCGAGGGGG
325 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
* *
12353544 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATT
390 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
12353609 AACCCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
455 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
12353673 GTTAAAGTGTCTGAAAGGGGGACACTTTTGTCAAATGGTCACAAAAATCTTGTACAGTTCGAGTT
520 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTT
* * *
12353738 TTTAGCTAAATTTTTTTGTTCATGCCAAAAAAAATACAAGGATGATGTCTACCAAGTTTGGGGCC
584 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
* ** * * *
12353803 AAAAACTCATTCTAAAAAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCAAAAATCGTGAAAA
649 -AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * *
12353868 ATAGAAAACGAGTCGTATTGCCATGAAACTTCACATGGAGGCTTATGGGACCATTGTATGAATTT
713 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* **
12353933 ACAAGCCATGAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
778 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *** *
12353998 TATCGATCCACGACTTGCACATCTAATCTCTCTGGCTGGCGTAGT----GCCCGCCCG
843 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * *
12354052 CCCACTCGTTTTGTCGGTTGGGTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGAC
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * ** * * *
12354117 CGAGAGTTGCGGCAGCAAGATCAACAGCATGCAGAGGGTGACCCCGACCGATCCTCGGCTTACGC
66 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA-CCCGACCGATCCTCGGCTTGCGC
* * * * *
12354182 ATCCCGCCCCTCTGG-CTAGCTGAGCGCTCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATATGG
130 ATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGG
* * * * *
12354246 AGTTCATTCCCAGTCTAAGCATACAGAGTTGATTCCCAATCTAAGATCGGACCGGACCGAGGGCT
194 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * *
12354311 GCGGCAGCACATGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCG
259 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
* * *
12354376 CCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCC-GGGGG
324 CCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * * **
12354440 GTGTACGCACTTGATGCGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
389 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
12354505 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGC
454 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
12354570 CATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
519 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
12354635 CTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACGAGGATCATGTCTACCAAGTTTGGGGCC
584 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
* * * * *
12354700 AAAACTCCTTTCGAAGAAATTTTCAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAA
649 AAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
12354765 ATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
713 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** *
12354830 ACAAGCCATAAAGATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCC
778 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
12354895 TATCGATCCACGGCTTGCGCATCCCGACTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCC
843 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CG
* * *
12354955 CACCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCGCAGTCTAAGATCAGACCAG
1 C-CC-GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * *
12355020 ACCGAGGGTTGCGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGAT-CTCCAGCTTGC
64 ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCT-CGGCTTGC
** * *
12355084 GCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCT-TTTTTCGTGGGTTGTCTTAGGCATAC
128 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTT-GTGGGTTGACTTAGGCATAC
* * * *
12355148 GGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAGGG
192 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * * **
12355213 TTGCGGCAGTACATGCTGGGCTCGGACGTGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCAT
257 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* * *
12355278 CGCCGGAGCATCGTCAGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGG
322 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * * *
12355342 GGGTGTGAGCACATGATGTGCAATGGCTGCCGGAACTTGGCCCTTATATTGGCCCCCTATCCCTC
387 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
12355407 ATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
452 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
12355472 GCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAG
517 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * ** **
12355537 TTTTTAGCT-AATTTTTTTGTGCATGCC-AACAAAATACAAGGATCACGTCTACTGAGTTTGGAC
582 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
* * * *
12355600 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAACGTTTCAAAAATCGTGAAA
647 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
*
12355665 AATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
712 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
12355730 TACAAGCCATAAAAATGGCACTGGCATGTAGAAATATGAAGAGGTGCCTAAACCCACCTACCACC
777 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
12355795 CTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG
842 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
12355854 CCCGCTCGTTTCGTCGATTGGCATAGGCTTACGGAGTTCATTCCTAGTCTAAGATCAGATCAGAC
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
12355919 CAAGGGTTGCGGTAGCAGGATCGGTAGCATGCAGAGTGGGACCCGACCGATCCTCGACTTGAGCA
66 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCA
* * *
12355984 TCCCACCCCTCTGGCCGACTGAGCACTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
131 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
* * * * * *
12356049 CTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAC
196 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * *
12356114 GGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG-CGACATTTTTCTTCGCCGAGGCACCATCGA
261 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGCCGGGGCACCATCGC
* ** * * * * *
12356178 TGGAGCATCACCGGAGAACCTAACCAGCGGCATTAGGGTTCCAACGATCAGGGGGGCCGGTGGGG
325 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGG
* * * *
12356243 GTGTGCGCACATGATGTACGGTGGGTGCTGGTACTTGGCACTGATATTGGCCCCCTATCCCTCAT
389 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
12356308 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGTCAGTAGC
454 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
12356373 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
519 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
12356438 CTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCC
584 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
* * *
12356503 AAAACTCCATCCGAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAA
649 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
*
12356568 TAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTA
714 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
12356633 CAAGCCATAAATATGGAATTGGCACGCAGAAATATGAAGATGTGCCTACACCCACCTACCACCCT
779 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
12356698 ATCGATCAACGGCTTGTGCATCCTGTCTCTCTGGCCGACATAATGCCCGCCCGCCCT
844 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* *
12356755 CCCGCTCATTT--T--ATTGG--T-----T---G-G--------C--T-T-AGA-CTG----GAC
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * ** *
12356788 TGAGGGTTGCGGTAGCATGATCGGCAGCACGCACAGGGGGACCC-AGTGATCCCCGGCTTGCGCA
66 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCA
* * * * * * *
12356852 TCCCGCCCCTCTAGTCGACTGAGCGCCTGCAAGCTCGTTTCGTGGTTTGAGTTAGGCATACGGAG
131 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
* * * *
12356917 TTCATTCCCAGTCTAATCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGC
196 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * * * *
12356982 TGCAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGTATTTTTCGTCGTCAGGGCACCATCACC
261 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC
* * * * * *
12357047 GGAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTTCGATGAT-TGGGGGGTC-GGGGGGT
326 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
*
12357110 GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
391 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
12357175 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCA
456 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * * *
12357240 CTAAAGCGTCTGAAATGGGGTCACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGATTTTT
521 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
12357305 TAGCTGATTTTTTTTGCGCATGCCAAAAAAAATACAAAGATCATGTCTACCAAGTTGGGGGCCAA
586 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
* * **
12357370 AACTCCTTCCGAAAAAATTTTAAAAAAACCCGAACCGCAAAAAGTTTCAAAAATCAAGAAAAATA
651 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
12357435 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
716 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
12357500 AGCGATAAAAATGGCATTGGCATGCAGTAATATGGAGATGTGCCTAAACCCACCTACCACCCTAT
781 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
12357565 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGCCTG
846 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
12357620 CCCGCTCGCTCCTTTTGTCGATTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCGGACC
1 CCCGCTCG----TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* ** * * * * * * *
12357685 GGATTGAGGGTTGCGGCACCAGGATCTGCAACACGCAGAGGGAGACCCGATCGATCCTCGACTTG
62 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
* * * **
12357750 TGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGACTTGTGGGTTGACTTAGGCATAC
127 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
* * *
12357815 GGAGTTCGTTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGG
192 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
** * *** *
12357880 TTGCAACAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATTGGGGCACAAT
257 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* * * *
12357945 CGTCGGAGAATCGTCGGAGAACCTGACCGGCGGCACTGGGGTTCCGACGATCGGGGGGGTCGGGG
322 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* *
12358010 GGGTGTGCGCACATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
387 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
12358075 ATCAAACCTC-AGGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
452 ATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
12358139 AGCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGA
516 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
12358204 TTTTTTAGCTGATTTTTTTTGCGCATGCCAAAAAAAATACAAAGATCATGTCTACCAAGTTGGGG
581 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGG
* * *
12358269 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAACCGCAAAAAGTTTCAAAAATCATGAA
646 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
12358334 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
711 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** * *
12358399 TTACAAGTGATAAAAATGGCATTGGCATGCAGTAATATGGAGATGTGCCTAAACCCACCTACCAC
776 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * *
12358464 CCTATCGATCCACGGCTTGGGTATCTCATCTCCCTGGTCGGGGTAGTGCCCGCCCGCCCG
841 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * * *
12358524 CCTGCTGGCTCGTTTTGTCGGTTGGCTTAGGTATATGGAGTTCATTCCTAGTCTAAGATCGGACC
1 CC--C--GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * * *
12358589 GGACTGAGGGTTGTAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTG
62 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
* * * * * * *
12358654 CGTATCCTGCCCCTTTAGCCGACTGAGCGCCCGTATGCTCGATTTGTGGGTTG----A--CATA-
127 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
* *
12358712 -G-G--------CA---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCGGAGCGGACCGAGGG
192 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* *
12358758 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACAAT
257 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* * * * *
12358823 CGCCAGAGAATCGTTGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGG
322 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * *
12358888 GGGTGTTCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCAATCCCGC
387 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
** * *
12358953 ATCAAACCTTAAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
452 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
12359018 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
517 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * * *
12359083 TTTTTAGCTGAATTTTTTTGTGCAAGGCAAAAAAAATACAAGGATCACGGCTACCAAATTTGGAG
582 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
* * * *
12359148 CCAAAACTCCTTCTGGAAAAATTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCGTGAAA
647 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
*
12359213 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
712 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
12359278 TACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
777 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** * * *
12359343 CTATCGATCCATAGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCCCG
842 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * *
12359402 CCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAATTTAAGATCGGACC-GAA
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A
* * * * ** * ** *
12359466 CCAAGGGTTGTGGTAGTAGGATCGACAGCACATAGAGAGGGACCCGGTCGATCCCCGGCTTGCGC
65 CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGC
* * * * * * *
12359531 ATCCCACACCTCTGGTCGACTGAGCGCCTGCACGCTTGTTTCGTGGGTTGACATAGGCATACGGA
130 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGA
12359596 GTTCATTCCCAG--T---C-T----A----A-T---A-TC--AGAT-----CGGACCGAGGGTTG
195 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * * * *
12359635 TGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCACCGC
260 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC
* ** ** *
12359700 TGGAGCATCACCGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGTGG
325 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG
* * * *
12359765 GTGTGCGCACTTGATATGCGATGGGTGCTAGTACTTGG-CCTTATGTTGGCCCCCTATCCCTCAT
389 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
12359829 GC-AACCTCGAGAACT--CACCCCCTTAAAAAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAG
454 -CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
12359891 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGT
518 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
12359956 TTTTAGTTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
583 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
* * * **
12360021 CAAAACTCCTTCCAAAAAAACTTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAA
648 CAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
*
12360086 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATT
712 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
12360151 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACC
777 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
12360216 CTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCG
842 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * *
12360275 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGAC
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * * *
12360340 TGAGGGTTGAGGTAGTAGGCTTGGCAGCACGCAG-GGTGGGACCCGATCGATCCCCGACTTGCAC
66 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG-GGGACCCGACCGATCCTCGGCTTGCGC
* * * * * *
12360404 ATCTCGGCCCTCTGGCC-AGCTGAGCGCCCGCATGTTTGTTTCGTGGGTTGACTTAGGCATACGG
130 ATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGG
* * * **
12360468 AGTTCATTCCCAGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTT
194 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * * *
12360533 CCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCATCACCGAGGCTA-CATC
259 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC-ACCATC
** * * * **
12360597 GCCGGAGCATCACCAGAGAACCTGACTGGCGACATTGGGGTTCCGTTGATCGGGGGGGCCAGCGG
323 GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GG
*
12360662 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * * * *
12360727 CATCAAACCTCGAGAACTCACACCCCCATAAAGAGCTTTTCAGATTTTACAAGTTTGCTACTAGT
451 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
12360792 AGCCATTAAAGTGTTTGAAATGGAGACATTTTTTTCAAATGGACACAAAATCTTGTACACTTCGA
516 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * *
12360857 GTTTTTAGC-GAAATTTTTCTGTGCATGGCAAAAAAAATAAAAGGATCTTTTCTACTAAGTTTGG
581 GTTTTTAGCTG-AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * **
12360921 GGCCAAAACTCCTTCCGAAAAATTTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTG
645 GGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* * *
12360986 AAAAATAGAAAACGAGTCGTCTTGCGATGCAACTTCACGTGAAGGCTTAAGAGACCATTGTATGA
709 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
12361051 ATTTATAAGCCATAAAAACT-GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCAAC
774 ATTTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
12361115 CACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCC
838 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCC
12361180 CG
899 CG
* ** * * * *
12361182 CCCGTTCGTTTTATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
*
12361247 CGATGGTTGC
66 CGAGGGTTGC
12361257 TGCAGCACAT
Statistics
Matches: 6332, Mismatches: 738, Indels: 259
0.86 0.10 0.04
Matches are distributed among these distances:
865 480 0.08
866 1 0.00
867 7 0.00
868 215 0.03
869 45 0.01
871 1 0.00
872 182 0.03
873 400 0.06
874 302 0.05
875 42 0.01
876 2 0.00
878 627 0.10
879 6 0.00
880 6 0.00
881 2 0.00
882 3 0.00
883 4 0.00
884 2 0.00
885 1 0.00
886 2 0.00
887 4 0.00
888 1 0.00
890 2 0.00
891 4 0.00
892 3 0.00
894 5 0.00
895 3 0.00
896 112 0.02
897 780 0.12
898 229 0.04
899 311 0.05
900 58 0.01
901 560 0.09
902 276 0.04
903 400 0.06
904 1078 0.17
905 90 0.01
906 1 0.00
907 80 0.01
908 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCA
TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC
GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
Found at i:12356944 original size:26 final size:26
Alignment explanation
Indices: 12356908--12356958 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12356898 TTGAGTTAGG
*
12356908 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAATCTAAT
12356934 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
12356959 GATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAT
Found at i:12357845 original size:26 final size:26
Alignment explanation
Indices: 12357809--12357861 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12357799 GTTGACTTAG
*
12357809 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12357835 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12357861 G
1 G
12357862 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12360485 original size:26 final size:26
Alignment explanation
Indices: 12360456--12360507 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
12360446 GTGGGTTGAC
12360456 TTAGGCATACGGAGTTCATTCCCAGT
1 TTAGGCATACGGAGTTCATTCCCAGT
12360482 TTAGGCATACGGAGTTCATTCCCAGT
1 TTAGGCATACGGAGTTCATTCCCAGT
12360508 CTAAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGGCATACGGAGTTCATTCCCAGT
Found at i:12362106 original size:720 final size:713
Alignment explanation
Indices: 12360482--12365455 Score: 6686
Period size: 706 Copynumber: 7.0 Consensus size: 713
12360472 CATTCCCAGT
* *
12360482 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTCCGGCAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC
* ** * * ** * *
12360547 TGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCATCACCGAGGCTACATCGCCGGAGCATCACCA
66 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCG-GGC-ACATCATC--AGCATCGCCG
* * **
12360612 GAGAACCTGACTGGCGACATTGGGGTTCCGTTGATCGGGGGGGCCAGCGGGGGGTGTGCGCACAT
127 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C--CGGGGGGTGTGCGCACAT
*
12360677 GATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * * * *
12360742 ACTCACACCCCCATAAAGAGCTTTTCAGATTTTACAAGTTTGCTACTAGTAGCCATTAAAGTGTT
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
12360807 TGAAATGGAGACATTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGC-GAAAT
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AAT
* * * * *** *
12360871 TTTTCTGTGCATGGCAAAAAAAATAAAAGGATCTTTTCTACTAAGTTTGGGGCCAAAACTCCTTC
383 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* **
12360936 CGAAAAATTTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
448 CGAAAAAATTTT-AAAAAAT-CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * * *
12361001 GTCGTCTTGCGATGCAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTATAAGCCATAA
511 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
12361066 AAACT-GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCA
576 AAA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * **
12361130 TGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGTTCGTTTTA
640 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
*
12361195 TTGGTTGGC
705 TCGGTTGGC
* * *
12361204 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGATGGTTGCTGCAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC
* * * *
12361269 TAGGCTCGAGCATGTGCTGGTG-TAGCATTTTTCTTCGCCGGGGCACCATTGCCA-GAGCATCAC
66 TGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGCC-GGGCA-CA-T--CATCAGCATCGC
* * * *
12361332 TGGAGAACCTGACCGGCGGCATTGGCGTTCCGTCGATCGAGGGGGCCGGGGGTGTGTGCGCACAT
125 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACAT
* * * * * *
12361397 TATGTGCGATGGGAGCTAGTACGTGGCCCTTATATTGGCCCCTTTTCCCTCATCAAACCTCGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
12361462 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
12361527 TGAAATGGGGACACTTTATTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGATTT
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-AT
* * *
12361592 TTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTCCTTC
383 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * **
12361657 CGAAAAAATTTTAAAAAATCTCGAACCGGAAAAACTTTTGAAAATCGTGAAAAATAGAAAACGAG
448 CGAAAAAATTTTAAAAAATC-CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
12361722 TCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAGTTTACAAGCCATAAA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
12361787 TATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCAACATACCACCCTAT-GATCCACA
577 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * ** *
12361851 GCTCGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCACCCGTTCGCCCGCTCATTTCGTC
642 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* *
12361916 GGTGGGA
707 GGTTGGC
* * *
12361923 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC
*
12361988 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGACACCATCATCGGAGCATCGCCG
66 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGG-CA-CATCATC--AGCATCGCCG
* * * *
12362053 GAGAACCTGACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGAGGGGTGTTTGCACACATG
127 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGG-GTGTGCGCACATG
* * * *
12362118 ATGTGCAATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATTCCTCATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
12362183 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCGAGCAGCCGTTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
12362248 GAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
12362312 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTTGGGCCAAAACTCTTTCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * * *
12362377 AAAAAAGTTTAAAAAATCCTAAACTGCAAAAAGCTTCAAAAATCATGAAAATTAGAAAACGAGTC
450 AAAAAATTTTAAAAAATCC-AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
12362442 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
12362507 TGGCATTGGCACACAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
12362572 TTGCGCATCCCGTATCTCTGGCAGGTGTAGTGCCTGCCCGCCCGCCCACGCGCTCATTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
12362637 TTGGC
709 TTGGC
* * * * *
12362642 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCATATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC
* * * *
12362707 T-GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGG----GCA-C--CATCGCCAGAGA
66 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGCACATCATCAGCATCGCCGGAGA
* * *
12362764 ACCTGACCGGCGGCATTGGGTTTCCGACGATCGAGGGGGCTGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12362829 GATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACT
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12362894 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
261 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12362959 GGGACATTTTTTTCAAATGGTCATAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
12363024 GCATGCCAACAAAAATGCAAGGATCATGTCTGCTAGGTTTGGGGCTAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
12363089 TTTTACAAAATCCTGAACCGCAGAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
456 TTTTAAAAAATCC-AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
12363154 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
12363219 TGGCATGCAGTAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGT
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
12363284 ATCCCATCTCCCTGGCCGGGGTAGTGCCCGCCCGCCCGCCTGTCTGCTCGTTTCGTCGGTTGGC
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * * *
12363348 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACAGAGGGTTGCGACAACACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC
* * *
12363413 TAGGCTCGGGCATGTGCTGGTG-TCACATTTTTCTTCCCCGGGGCAC--CATC-G--T---CGGA
66 TGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGCC-GGGCACATCATCAGCATCGCCGGA
* * * * * * *
12363469 GAACCTGACCGACGACATTGCGGTTCTGACGAACGAGGGGGCCGGGGGGTGTGTGCACACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGAT
* *
12363534 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
12363599 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
12363664 AATGGGGACACTTTTTTCAAATGGTCATAAGAA-CTTGTACACTTCGTGTTTTTAGCTGAACTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
12363728 TTTATGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAGGTTCGGGGCTAAAACTCCTTCCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
12363793 AAAAATTTTACAAAATCCTGAACCGTAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCC-AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
12363858 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12363923 GGCATTGGCATGCAGTAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * **
12363988 TGGGTATCTCGTCTCCCTGGTCGGGGTAGTGCCCGCCCGCCCGCCTGCTGGCTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
12364053 TGGC
710 TGGC
* *
12364057 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
12364122 TGGGCTCGGGCATGTGCTAGTGCTGTATTTTTCTTCGTCGGG----GCAT---CATCGCCGGAAA
66 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGCACATCATCAGCATCGCCGGAGA
* * ** * *
12364180 ACCTGATCGGCAGCATTACGGTTCTGACGAACGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12364245 GATGGTTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
12364310 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTATCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12364375 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAACTG-ATTTGTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTG
* * * ** *
12364439 T-AATACCAACAAAAATACAAGGATCACGTCTACCATGTTTGGCACCAAAACTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
12364503 ATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGACAAATAGAAAACGTGTCGACTT
455 ATTTTAAAAAAT-CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
12364568 GCCATGAAACTTCACATGAAGCCTTAATGGACCATTGTATGAATTTACAAGCCATGAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
12364633 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATTGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * *
12364698 CATCTCGTCTCTCTGGTGGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGAT
649 CATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
12364763 TGGC
710 TGGC
* * *
12364767 TTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
12364832 TGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCGTCAGGGCACCATCGTCGAAGGATCGCCG
66 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG-CCGGGCA-CATCATC--AGCATCGCCG
* *
12364897 GAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGTGCACATGAT
127 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * *
12364962 GTGCGATGGGTGCTGCTTCTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** *
12365027 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAAACATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
12365092 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTATT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TT
* * *
12365156 TTTGTGAATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
12365221 AAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCG
451 AAAAATTTTAAAAAAT-CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
12365286 TCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12365351 GGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
12365416 TGCACATCCTGTCTCTCTGGCCGGCGTAGTGCCCGTCCGC
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
12365456 TCGTTTCGTC
Statistics
Matches: 3784, Mismatches: 410, Indels: 120
0.88 0.10 0.03
Matches are distributed among these distances:
705 142 0.04
706 665 0.18
707 312 0.08
708 16 0.00
709 637 0.17
710 134 0.04
711 5 0.00
712 2 0.00
716 4 0.00
717 1 0.00
718 274 0.07
719 387 0.10
720 488 0.13
721 317 0.08
722 397 0.10
723 2 0.00
725 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGCACATCATCAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
Found at i:12364731 original size:4 final size:4
Alignment explanation
Indices: 12364724--12364749 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
12364714 TGGGTGTAGT
12364724 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
12364750 TCGTTTCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:12367045 original size:719 final size:717
Alignment explanation
Indices: 12365662--12367153 Score: 2232
Period size: 719 Copynumber: 2.1 Consensus size: 717
12365652 TCCAGTGTAA
* * *** *
12365662 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTACAGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCACATGCTGGC
** * * * *
12365727 CTCGAGCATGTGCTGGTGTTGTATTTTTCTTCATCGGGCCACCATCATCGGAGCATCGTCGAAGA
66 CTCGAGCATGTGCTGGTACTGTATTTTTCTTCATAGGGCCACCATCACCGAAGCATCGCCGAAGA
* *
12365792 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGTCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTAGGGTTCCAACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
12365857 AATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
196 AATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
12365922 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATATCTGAAATG
261 CCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATATCTAAAATG
12365987 GGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTCCGAGTTCTTAGCTGATTTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTCCGAGTTCTTAGCTGATTTGTTTTGT
*
12366052 GCATACCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGCGTCAAAACTCCATCTGAAAAAA
391 GCATACCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCATCTGAAAAAA
* * *
12366117 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCGTCTTG
456 TTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12366182 CCATGAAACATCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATGAAAATGGCAT
521 CCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12366247 TGGCAAACAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATTGATCCACGGCTTGCGC
586 TGGCAAACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*** *
12366312 ATCCCGTCTCTCTGGCCGGTTTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCT
651 ATCCCGTCTCTCTGGCCGGCACAATGCCCG-CCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCT
12366377 TAG
715 TAG
* *
12366380 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCACATGCTGGC
* * * *
12366445 CTCGGGCATGTGCTGGTACTGTATTTTTCTTCGTTAGGG-CACCATCGCCGAAGCATCGCCGGAG
66 CTCGAGCATGTGCTGGTACTGTATTTTTCTTC-ATAGGGCCACCATCACCGAAGCATCGCCGAAG
* * * *
12366509 AACCTGACCGGCGGCATTGGGGTTTCAATGATCGGGGGGGCCGGGGTGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTAGGGTTCCAACGATCGGGGGGGCCAGGG-GGTGTGCGCACATGATGT
* ** * *
12366574 GCATTGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCGTATCCCTTATCAAACCTCAAGAACTCA
194 GCAATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * * *
12366639 CACCCCCTTAAAGAGCATTTCAGGTTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATATCTAAAA
* * ** *
12366704 TGGGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTTGAGTT-TCTAGCTGATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTCCGAGTTCT-TAGCTGATTTGTTT
* * * * * *
12366768 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAATTTTGGGGCCAAAACTCCTTCTGAAA
388 TGTGCATACCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCATCTGAAA
* * * *
12366833 AAATTTTAAAAAATTTTGAACCATAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
12366898 TTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
12366963 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCAAACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12367028 CGCATCCCGTCTCTCTGGCCGGCACAATGCCCGCCGCCCGCCGGCCCTCTCGTTTTGTCGGTTGG
648 CGCATCCCGTCTCTCTGGCCGGCACAATGCCCGCCACCCGCCCGCCCGCTCGTTTCGTCGATTGG
12367093 CTTAG
713 CTTAG
* * *
12367098 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGATGTGATAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCA
12367154 GGATCGACAG
Statistics
Matches: 692, Mismatches: 79, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
718 231 0.33
719 461 0.67
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCACATGCTGGC
CTCGAGCATGTGCTGGTACTGTATTTTTCTTCATAGGGCCACCATCACCGAAGCATCGCCGAAGA
ACCTGACCGGCGGCATTAGGGTTCCAACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATATCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTCCGAGTTCTTAGCTGATTTGTTTTGT
GCATACCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCATCTGAAAAAA
TTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCAAACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCACAATGCCCGCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTT
AG
Found at i:12367286 original size:26 final size:26
Alignment explanation
Indices: 12367257--12367309 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12367247 GTTGACCTAG
12367257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
12367283 GCATACTTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12367309 G
1 G
12367310 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12369302 original size:902 final size:903
Alignment explanation
Indices: 12366388--12369851 Score: 4995
Period size: 902 Copynumber: 3.8 Consensus size: 903
12366378 AGGCATACAG
* *
12366388 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** *
12366453 TGTGCTGGT-ACTGTATTTTTCTTCGTTAGGGCACCATCGCCGAAGCATCGCCGGAGAACCTGAC
66 TGTGCTGGTGTC-ATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* * ** *
12366517 CGGCGGCATTGGGGTTTCAATGATCGGGGGGGCCGG-GGTGGTGTGCGCACATGATGTGC-ATTG
130 CGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGA-TG
* * *
12366580 GGTGCTGGTTCTTGGCCCTTATATTGGCCCCGTATCCCTTATCAAACCTCAAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* * *
12366645 CTTAAAGAGCATTTCAGGTTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
* * * * *
12366710 CACTTTTTTCAAATGGTCACATAATCTTGTACACTTTGAGTTTCTAGCTGATTTTTTTTGTGCAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
* * * *
12366775 GCCAACAAAAATACAAGGATCATGTCTACCAATTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT
*** * * *
12366840 AAAAAATTTTGAACCATAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
454 AAAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
12366905 GAAACTTCACT-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
519 GAAACTT-AATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGG
12366969 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
583 CA-GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
12367034 CCGTCTCTCTGGCCGGCACAATGCCCGCCGCCCGCCGGCCCTCTCGTTTTGTCGGTTGGCTTAGG
647 CCGTCTCTCTGGCCGGCACAGTGCCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGG
* * * * *
12367099 CATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGATGTGATAGCAGGATCGACAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAG
* **
12367164 CACGCAGAGGGGGACCCGACCGATCTTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
777 CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
12367229 CGCATGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTT
842 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACCT
*
12367291 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
12367356 TGTGCTGGTGTCATATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACC
66 TGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
12367421 GGCGGCATTAGGGTTCCGGTGATC-GGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGGG
131 GGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12367485 TGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
12367549 TAAAGAGCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
12367614 CTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
* * * * *
12367678 CAAGAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAA
391 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * * * * *
12367743 AAAATCCCGAACTATAAAAAGTTTTGAAAATTGTGAAAATTAAAAAACGAGTCGTCTTGCCATGA
456 AAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
12367808 AACTTCATGTGAAGGCTTAAGGGACCATTGT-TGGAATTTACAAGCCATAAAAATGGCACTGGCA
521 AACTTAATGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAATGGCACTGGCA
* ** *
12367872 -CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACAACTTGCGGATCC
585 GCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** * *
12367936 CGTCTCCCTGGCCGGCGTAGTGCCCGCCTGCTCGCC-G---GCTCGTTTCGTCGGTTGGCTTAGG
648 CGTCTCTCTGGCCGGCACAGTGCCCGCC-GCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGG
* * * * * * * *
12367997 CATACGGAGTTCATTCCCAATCTAAGATTGGACCAAACTGAGGGTTACGGCAGCAAGATCGGCAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAG
* * * ** *
12368062 CACGCAAAGGGGGACCCGGTCGATCCCCGCCTTTTGCATCCCGCCTCTCTGGCCGGCTGAGCGCC
777 CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* ** * * * * **
12368127 CGTACGCTCGTTTTATTGGTTGACTTAGGCTTGCGGAGTTCATTCCCAATCTAAGCATACGG
842 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACCT
* * * * * *
12368189 AGTTCATTCCCAATCTAAGATCTGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
12368254 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
66 TGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * * *
12368319 GACGGCATTAGGGTTCCGGTGATCGGGGGGGTC-GAGGGGGTGTGCACACATGATGTACGATGGG
131 GGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGGG
*
12368383 TGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
12368448 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * * *
12368513 CTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATTC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
* ** * *
12368578 CAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTAC
391 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * *
12368643 AAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGA
456 AAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
12368708 AACTTAATGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCAT
521 AACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCA-
*
12368773 GCAAAAATATGAAGATGTGCCTAAACCCACCTA-CACCCTAACGATCCACGGCTTGCGCATCCCG
585 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
12368837 TCTCTCTGGCTGGCATAGTGCCCGCCGCCCGCCTGCGCGCTCGTTTCGTCGAATGGCTTAGGCAT
650 TCTCTCTGGCCGGCACAGTGCCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
*** * *
12368902 ACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGTAGCAGGATTGACAGCAC
715 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCAC
* * *
12368967 GCAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGC
780 GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
12369032 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATACCT
845 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACCT
* * * *
12369091 AGTTCATTCCCAGTCTAAGATCGGATCAGACGGATGGTTGCGGTAGCACATACT-GGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
12369155 TGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * * * *
12369220 AGCTGCATTGGGGTTCCGGCGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGTTGTGCGATGGG
131 GGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGGG
*
12369285 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
12369350 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
*
12369415 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTATGTGCATGC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
* * *
12369480 CAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAGATTTTAA
391 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * * *
12369545 AAAATCTCGAA-CAGCAAAAAGTTTTGAAAATTGTGAAAATTAGAAAACGAGTCGTCTTGCCATG
456 AAAATCCCGAACCA-CAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* ** * * *
12369609 AAACTTCACATGAAGGCCTAGGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCACTGGCA
520 AAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCA
* *
12369674 CCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-ATCCACGGCTTGCGCATCCC
585 GC-AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
12369738 GTCTCTCCGACAGACGCAGTGCCCGCCCGCCCGCCTACCCGCTCGTTTCGTC-AGTTGGCTTAGG
649 GTCTCTCTGGCCGGCACAGTGCCCG-CCGCCCGCCTGCCCGCTCGTTTCGTCGA-TTGGCTTAGG
* * **
12369802 CATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGG
712 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
12369852 CAACACATGC
Statistics
Matches: 2280, Mismatches: 257, Indels: 48
0.88 0.10 0.02
Matches are distributed among these distances:
898 414 0.18
899 144 0.06
900 244 0.11
901 391 0.17
902 780 0.34
903 305 0.13
904 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
GGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
AAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCAG
CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCACAGTGCCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACG
CAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACCT
Found at i:12370901 original size:717 final size:715
Alignment explanation
Indices: 12369091--12371279 Score: 3154
Period size: 717 Copynumber: 3.1 Consensus size: 715
12369081 AAGCATACCT
* * * * * *
12369091 AGTTCATTCCCAGTCTAAGATCGGATCAGACGGATGGTTGCGGTAGCACATACTGGCTCGGGCAT
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGCTCGGGCAT
* ** * *
12369156 GTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-
66 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
** *
12369220 AGCTGCATTGGGGTTCCGGCGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGTTGTGCGATGGG
131 A-C-GCATTGGGGTTCCGATGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGG
*
12369285 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA-CCCCT
* * *
12369350 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
256 TAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
12369415 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTATGTGCATGC
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
12369480 CAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAGATTTTAA
386 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAA
* * *
12369545 AAAATCTCGAACAGCAAAAAGTTTTGAAAATTGTGAAAATTAGAAAACGAGTCGTCTTGCCATGA
451 AAAATCTCGAACAGCAAAAAGTTTCGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
12369610 AACTTCACATGAAGGCCTAGGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCACTGGCAC
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
12369675 -CTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-ATCCACGGCTTGCGCATCCC
581 GC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * **
12369738 GTCTCTCCGACAGACGCAGTGCCCGCCCGCCCGCCTACCCGCTCGTTTCGTCAGTTGGCTTAGGC
645 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
12369803 ATACGG
710 ATACGG
* ** * *
12369809 AGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT-GGCTCGGGCA
* * *
12369874 AGTGCTGGTGCCACAATTTTCTTCGCCGGGG---CA----C----CATCGCCGGAGAACCTGACC
65 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * *
12369928 GACGGCATTGGGGTTCTGATGATCGGGGGGGTCGGGGGGTATGCGCAGATGATGTGCGATGGGTG
130 GAC-GCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
12369993 CTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATGAAAACTCGAGAACTCACACCCCTTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACCCC-TTA
* * *
12370057 AAGAGCATTTCAGATTTTACAAGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
258 AAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
12370122 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC-GGATTGTTTTTGTGCATGCG
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCC
* *
12370186 AACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAA
387 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAA
* * * *
12370251 AAATCTCGTACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
452 AAATCTCGAACAGCAAAAAGTTTCGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
12370316 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCACG
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
12370381 CAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCGT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * ** * *
12370446 CTCTCTGGCCGACGTAGAGCCCGCTCGCCCGCCCGTTCGCTCGTTTCATCATTTGGCTTAGGCAT
647 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
12370511 ACGG
712 ACGG
* * *
12370515 AGTTAAATCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT-GGCTCGGGCA
12370580 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
65 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* *
12370645 GACGACATTGGGGTTCCGATGATCAGGGGGGCCGGGGGGTGTGCGCATATGATGTGCGATGGGTG
130 GACG-CATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
12370710 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCCAGAACGCACACCCCTTAA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACCCCTTAA
*
12370775 AGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
259 AGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
12370840 TTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTCAATTTTTTTATGCATGCCAA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
12370905 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAACT-TTTCCAAAAAAATTTTAAAA
389 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCTTTCCGAAAAAATTTTAAAA
* ** * * * *
12370969 AATC-CTGAACCGTGAAAAGTTTCGAAAATAGTGAAAAGTACAAAACGAGCCGTCTTGCCTTGAA
453 AATCTC-GAACAGCAAAAAGTTTCGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
12371033 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
12371098 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTGCGCATCCCGC
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
12371163 CTATCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCAT
647 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
12371228 ACGG
712 ACGG
* ** *
12371232 AGTTCATTCCCAGTCTAAAATCAGACTGGACCAAGGGTTGCGGCAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
12371280 GGATCGATAG
Statistics
Matches: 1303, Mismatches: 146, Indels: 45
0.87 0.10 0.03
Matches are distributed among these distances:
704 8 0.01
705 363 0.28
706 213 0.16
707 1 0.00
708 45 0.03
709 3 0.00
712 1 0.00
713 1 0.00
716 4 0.00
717 546 0.42
718 85 0.07
719 33 0.03
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (715 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGCTCGGGCAT
GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
ACGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACCCCTTAAAG
AGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAAT
CTCGAACAGCAAAAAGTTTCGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
Found at i:12371412 original size:26 final size:26
Alignment explanation
Indices: 12371383--12371435 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12371373 GTTGACTTAG
12371383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12371409 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12371435 G
1 G
12371436 ATCAGGCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12373139 original size:715 final size:711
Alignment explanation
Indices: 12371409--12373592 Score: 3017
Period size: 715 Copynumber: 3.0 Consensus size: 711
12371399 CCCAGTCTAA
* * * *
12371409 GCATACGGAGTTCATTCTCAGTCTAAGATCAGG-CCGGACCGAGGGTTACGGTAGCACATGT-TA
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGTTGCGGCAGCA-AT-TCTA
* *
12371472 GGCTCGGGCATGTGCTGGAGCCGCATTTTTCTTCATCAGGGCACCATCGTCGGAGCATCGCCGGA
63 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * *
12371537 GAACCTGACCGACGACATTGGGGTTCCAGCGATC-GAGGGGCC-GGGGGGTGTGCGCACATGATG
128 GAACCTGACCGGCGAAATTGAGGTTCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
12371600 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTA
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12371665 ACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12371730 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTCTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* *
12371794 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACCAACACTCCTTTCGA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA-CAAAACTCCTTCCGA
* * * * * * *
12371858 AAAAGTTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCA
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCG
* *
12371923 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12371988 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACA
579 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGC-
*
12372053 TGCGCATCCCGTCTCTCTGGCTAACGTAGTGCCCGCCCGCTCGTCCACTCGCCCGCTCGTTTCGT
642 TGCGCATCCCGTCTCTCTGGC-CACGTAGTGCCCGCCCG--C-TCCA-T--CCCGCTCGTTTCGT
12372118 CGGTTGGCTTAG
700 CGGTTGGCTTAG
* * * * * *
12372130 GCCTATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGAGTTGCGACAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCA-ATTCTAGG
* * **
12372195 CTCGGGCATTTGCTGGTGCTGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** * *
12372260 ACCTGACCGGAGATATT-AGGGTTCAGGTGATCGGGAGGGCCGGGGGGGTGTGCGCACAAGATGT
130 ACCTGACCGGCGAAATTGA-GGTTC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
12372324 GTGGTGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12372389 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATTGCCATTAAAGTGTCCTGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAA
* *
12372454 ATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
12372519 TGTGCATGCCAAGAAAAATACAAGGATCATGTCTTCCAAGTTTGGGGAGAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAA
* * * *
12372584 AAATTTTAAAAAATCCCCAACCACAAAAAGTGTTGAAAATCATAAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGT-TTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
12372649 TTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-G
516 TTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12372713 TATTTGGCACACAAAAATATGAAGATGTGCCTAAACGTA-CTACCACCCTATCTATCCACGGCTC
581 CA-TTGGCACACAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACGGCT-
* * * ** * *
12372777 GCGCATCCCATCTCTCTGGCCGACGTGGTGCCTGCCCGC-CCAT-CCGCTCGTTTTATCGGTCGA
643 GCGCATCCCGTCTCTCTGGCC-ACGTAGTGCCCGCCCGCTCCATCCCGCTCGTTTCGTCGGTTGG
12372840 CTTAG
707 CTTAG
* * *
12372845 GCATACGTAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGTTCCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCAATT-CTAGG
* * * * *
12372910 CTCAGGTATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
12372975 ACCTGACCGGCGAAATTGAGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGCCCATGATGTG
130 ACCTGACCGGCGAAATTGAGGTTC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
12373040 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12373105 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12373170 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTC
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
12373235 TGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTGCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAA
* * *
12373300 TTTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
12373365 GCCATGAAAGTTAATGTGAAGGCTTAAGGGACTATTGTATGCATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12373430 TTGGCA-AGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATGCACGGCTTGC
583 TTGGCACA-CAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGC-TGC
* * *
12373494 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCTAGCTTGCTCGCTCGTTTCGTCGGTTGG
645 GCATCCCGTCTCTCTGGCCA-CGTAGTGCCCGCCCGCT-CCAT-CCCGCTCGTTTCGTCGGTTGG
*
12373559 CATAG
707 CTTAG
*
12373564 GCATACGAAGTTCATTCCC-GATCTAAGAT
1 GCATACGGAGTTCATTCCCAG-TCTAAGAT
12373593 CAGTCCGGAC
Statistics
Matches: 1287, Mismatches: 148, Indels: 58
0.86 0.10 0.04
Matches are distributed among these distances:
713 1 0.00
714 266 0.21
715 362 0.28
716 2 0.00
717 2 0.00
718 2 0.00
719 48 0.04
720 3 0.00
721 133 0.10
722 7 0.01
723 192 0.15
724 260 0.20
725 9 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCAATTCTAGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGCGAAATTGAGGTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTGCGCATCC
CGTCTCTCTGGCCACGTAGTGCCCGCCCGCTCCATCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:12374649 original size:159 final size:159
Alignment explanation
Indices: 12374407--12374775 Score: 443
Period size: 159 Copynumber: 2.3 Consensus size: 159
12374397 AGTGCCCGCC
* * * *** * * *
12374407 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGATCGGGCTG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCG
* * *
12374472 AGGGTTACAACAGTAGGATTGCCAGCACGCAAAGGGGGACCC-GATCGATCCCCGACTTACGCAT
66 AGGGTTACAACAGCAGGATTGACAGCACGCAAAGGGGGACCCAG-CCGATCCCCGACTTACGCAT
** * * *
12374536 CCTGCCCCTTTGGGCTGCTGAGCGCACGCA
130 CCCACCCCTCTGGCCGGCTGAGCGCACGCA
* * * *
12374566 CGCTCGTTTCATGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCG
* * * * *
12374631 AGGGTTGCAGCAGCAGGATTGACAGCATGCAAAGGGGGACCCAGCCGATCCTCGGCTTACGCATC
66 AGGGTTACAACAGCAGGATTGACAGCACGCAAAGGGGGACCCAGCCGATCCCCGACTTACGCATC
*
12374696 CCACCCCTCTGGCCGGCTGAGCGCCCGCA
131 CCACCCCTCTGGCCGGCTGAGCGCACGCA
* * * *
12374725 TGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCTAGTTTAAG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
12374776 CATATGGAGT
Statistics
Matches: 174, Mismatches: 35, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
159 173 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCG
AGGGTTACAACAGCAGGATTGACAGCACGCAAAGGGGGACCCAGCCGATCCCCGACTTACGCATC
CCACCCCTCTGGCCGGCTGAGCGCACGCA
Found at i:12374778 original size:26 final size:26
Alignment explanation
Indices: 12374749--12374801 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12374739 GTTGACTTAG
* *
12374749 GCATACGGAGGTCATTCCTAGTTTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
* *
12374775 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
12374801 G
1 G
12374802 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:12377835 original size:883 final size:876
Alignment explanation
Indices: 12374775--12380158 Score: 6450
Period size: 899 Copynumber: 6.0 Consensus size: 876
12374765 CCTAGTTTAA
* *
12374775 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
12374840 CTCGGGCATGTGCCGCTGCCGCACTTTTCATCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCAGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * * * *
12374905 ACCTAATTGGCGGCATTGGTGTTCCGGCGATCGGGGGGGCCGGCGGGGGGTGTGCGCACATGATA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAG-GGGGGGTGTGCGCACATGATG
* *
12374970 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12375035 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTTAAGTGTTTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12375100 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12375165 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAA
390 TGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** ** * ** *
12375230 ACTTTTTGCAAAATCCTGAACCGCAAAAAGTGTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
455 AAATTTTAAAAAATCCCGAACCGCAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
12375295 CTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12375360 GCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTT
584 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12375425 ACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCC-GCCCG-CCTGCTCGCTCGTTTCATCGGTTGG
649 ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
12375488 CATAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAAGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGAT
** * ** * * * *
12375553 CGGTAGCACGCAGAGGGGGACCTAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTG
779 CGACAGCACACAGAGGGGGACCCGACCGAT-CCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTG
* *
12375618 AGCACCCGCACGCTCATTTCATGGGTTGACTTAG
843 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
** * * *
12375652 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCTGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** * *
12375717 CTCAGGCATGTGCTGGTGCCATATTTTTCTTCATTAGGGCACCATCGGCGGATCATCGCCGGAGA
66 CTCAGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
12375782 ACCTGACC-AGCGGCATTGTGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATG
* * *
12375844 TGCGATGGGTGCTGGCACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12375909 ACACCCCCTTAAAGAGCATTTGAGATTTTGCATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
12375974 ATGGGGACACATTTTTCAAATGGTCATAAAATCATGTACACTTCGAGTTTTTACCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * *
12376039 TGTACATGCTAATAAAAATACAGGGATCATGTCTACCAAATTTGGGGACAAAACTCCTTCCGAAA
390 TGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * ** *
12376104 AAAATTTAAAAAATCCCAAACCGGAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTC
455 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12376169 TTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12376234 CATTGGGACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCT
585 CATT-GG-CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** *
12376297 TGTGCATCCCGTCTCTTTGGCCGGCGTAGTGCCC-GCCCG----G-CCGCTCGTTTCGTCGGTTG
648 TACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
12376356 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCTGTAGCAAGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGA
* **
12376421 TCGGCAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCT
778 TCGACAGCACACAGAGGGGGACCCGACCGATCC-CGGCTTGTGCATCCTGCCCCTCTGGCCGGCT
* *
12376486 GAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
842 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
12376521 GCATACGAAGTTCATTCCAAGTTTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
1 GCATACGGAGTTCATTCCCAG--T---C---TA-AG---ATT----G-----GA-C---C-AGAC
* * * * *
12376586 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGA-ATGTGCTGCTGTCACATTTTTCATCGTCGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTC-AGACATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* * * *
12376650 GCACCATTGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAAGATCGAGGGG
104 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
12376715 GCCAGCGGGGGGGTATGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
169 GCCA--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
12376780 CTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
232 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
12376845 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
297 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* ** ** * *
12376910 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACACCAA-AAACAAAATGAGGATCACATCTGC
362 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AAAACAAGGATCACGTCTAC
* ** * * * *
12376974 CAGGTTTGGCACCAAAACTCTTTCTGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAA
426 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* * *
12377039 AAATCGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCA
491 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
12377104 TTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
556 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
** * *
12377169 CACCTACCACCCTATCGATCCACGGCTTACGCATCTTGTCTCTCAGGCCGACGTAGTGCCCGCCT
621 CACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCT
* * * *
12377234 GCCCGCCCATCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTGTAA
683 GCCCG-CC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12377299 GATCAGACTGGACCGAGGGTTGCGACAGTAGGATCGACAGCGCATAGAGGGGGACCCGACCGATC
745 GATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGACCGATC
* *
12377364 CTCGGCTTGTGCATACC-GCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGAC
810 C-CGGCTTGTGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
12377428 TTAG
873 TTAG
* * *
12377432 GCATACGGAGTTCATTACCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12377497 CTCAGACATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCAGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
12377562 ACCTGTCCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGAGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGT
* * * *
12377627 GTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAAGTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
12377692 CACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGAATAAAGCGCCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12377757 TGGGGA-AGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGACTTTTTT
326 TGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
12377821 TGTGCATGCCAA-AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
390 TGTGCATGCCAACAAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
12377885 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCAT
454 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12377950 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATA
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12378015 TCATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTT
584 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
12378080 GCGCATCCCGTCTCTCTGGCTGGCGTAGCGTCCACCAGCCCG-CCCGCCCGTTCGTTTCGTCGGT
649 ACGCATCCCGTCTCTCTGGCCGGCGTA--GTGC-CCTGCCCGCCCCGCCCGCTCGTTTCGTCGGT
* * *
12378144 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-AGGACCAGACCAAGGGTTGCGGCAGTA
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGTA
* * * * * * ** * *
12378208 GGATCGGCAGCACGCAGAGAGGGACTCGACCGATCCCTGACTTGTGTATCCCACCCTTCTGACCG
775 GGATCGACAGCACACAGAGGGGGACCCGACCGATCCC-GGCTTGTGCATCCTGCCCCTCTGGCCG
** **
12378273 GCTGAGCGCTTGCACGCTCGTTTTGTGGGTTGACTTAG
839 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
12378311 GCATCCGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGATCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT--TG-G---A---CCAG------A-C----C-GA-
**
12378376 CGAAGGTTGCGGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCAGA-CATGTGCTGGTGCCGCATTTTTCTTCATC-GG
* * *
12378440 GGACCATCACGGAGCATCGCCGGAACATCGCCGGAGAACCTGACCAGA-GGCATTGGGGTTTCGA
103 GG-----CAC----CATCGTCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGA
* *
12378504 CGATCGGGGGGGTCGGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
158 CGATCGGGGGGGCCAGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
12378569 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
222 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
12378634 TTACAGGTTTGTTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGACATTTTTTTCAAATGGTCAA
287 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
12378699 AAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
352 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGAT
* * * *
12378764 CATGTCTACCTAGTTTGGGG--------CC--CCAAAAAAATTTTAAAAAATCCCGAACCGTAAA
417 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* * * * *
12378819 AAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGACTTGCCATGATACTTCACATGAAGGTTT
482 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
12378884 AAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGT
547 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
12378949 GCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAG
612 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAG
*
12379014 TGCCCT-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCA
677 TGCCCTGCCCG--C-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * *
12379078 GTCTAAGATCAGACTGGACTGAGAGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGA
739 GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGA
* ** *
12379143 CCGATCCCTAGCTTGTGCATCCTGCCCCTCTAACCGGCTGAGCGCTCGCACGCTCTTTGTTTGAC
804 CCGATCCC-GGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC---G--T---
* * *
12379208 TTAGGCATACGAAGTTCATTCCCAGTCTAA
860 TT---CAT--G-GGTTGA----C--T-TAG
* * * *
12379238 GCATACGGAGTTCATTCCCACTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
12379303 CTC-GAGCATGTGCTGGTGTCGTATTTTTCTTC-TCCGAGACACCATCGCCAGAGCATCGTCGGA
66 CTCAGA-CATGTGCTGGTGCCGCATTTTTCTTCAT-CGGGGCACCATCGTCGGAGCATCGCCGGA
* * ** * * * *
12379366 GAACCTGACCGGCGACATTGGGGTTCCGGTGATCGGGGAGGCC-CGGGGGGTGTACGCGA-ATCA
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGC-ACATGA
* *
12379429 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
12379494 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
12379559 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGGGTTTTTAGCTGAATTGT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
12379624 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCCAA
388 TTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
12379689 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCA
453 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
12379754 TCTTGTCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTTACTAAGGCCATAAA
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTAC-AA-GCCATAAA
* * *
12379819 AATGGCATTTGCCACGCAAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCA
580 AATGGCA-TTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * **
12379884 CCAGCTTACGTATGCCCGTCTCATCTGGCCGGCGTTAGTGCCCAACCCTGCCTGTCCGCCCGTCT
643 -CGGCTTACGCAT-CCCGTCTC-TCTGGCCGGCG-TAGTGCCCTGCCC-GCC---CCGCCCG-CT
* * * * * *
12379949 CCGCGGTCATTCGTTGGTTGGCTTAGGCATAATGGAGTTCATTCCTAGTCTATGATCGGACCAGA
699 ---C-GT--TTCGTCGGTTGGCTTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * ** * *
12380014 TCGAGGGTTGTGGCAGTAGGATCGATAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
757 CCGAGGGTTGCGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGACCGAT-CCCGGCTTGTGC
* * * * *
12380079 ATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGACATAG
821 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
12380135 GCATACGGAGTTCATTCCCTGTCT
1 GCATACGGAGTTCATTCCCAGTCT
12380159 TAGCATAAGG
Statistics
Matches: 3886, Mismatches: 458, Indels: 306
0.84 0.10 0.07
Matches are distributed among these distances:
868 2 0.00
869 177 0.05
870 1 0.00
871 1 0.00
873 182 0.05
874 284 0.07
875 3 0.00
877 146 0.04
878 6 0.00
879 178 0.05
880 2 0.00
881 3 0.00
882 5 0.00
883 459 0.12
884 3 0.00
885 120 0.03
886 2 0.00
889 244 0.06
890 11 0.00
891 52 0.01
894 1 0.00
895 119 0.03
896 4 0.00
897 29 0.01
898 5 0.00
899 549 0.14
900 9 0.00
901 58 0.01
902 23 0.01
903 18 0.00
904 53 0.01
905 60 0.02
906 367 0.09
907 14 0.00
908 11 0.00
909 5 0.00
910 12 0.00
911 184 0.05
912 2 0.00
913 1 0.00
914 3 0.00
915 62 0.02
916 234 0.06
917 29 0.01
918 112 0.03
919 4 0.00
920 5 0.00
923 1 0.00
924 2 0.00
926 3 0.00
927 26 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCG
ACAGCACACAGAGGGGGACCCGACCGATCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:12378347 original size:26 final size:26
Alignment explanation
Indices: 12378311--12378362 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12378301 GTTGACTTAG
* *
12378311 GCATCCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12378337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12378363 AATCGGATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12379249 original size:26 final size:26
Alignment explanation
Indices: 12379212--12379264 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12379202 TTTGACTTAG
*
12379212 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
*
12379238 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
12379264 G
1 G
12379265 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:12380171 original size:26 final size:26
Alignment explanation
Indices: 12380135--12380210 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
12380125 GTTGACATAG
*
12380135 GCATACGGAGTTCATTCCCTGTCTTA
1 GCATACGGAGTTCATTCCCAGTCTTA
*
12380161 GCATAAGGAGTTCATTCCCAGTCTTA
1 GCATACGGAGTTCATTCCCAGTCTTA
*
12380187 GCATACGGAGTTAATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
12380211 AAGATCAGAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTTA
Found at i:12380379 original size:26 final size:26
Alignment explanation
Indices: 12380349--12380398 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12380339 GACTTAGGCA
12380349 TACGGAGTTCATTCCAAGTCTAAGCT
1 TACGGAGTTCATTCCAAGTCTAAGCT
* *
12380375 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCAAGTCTAAG
12380399 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCAAGTCTAAGCT
Found at i:12380384 original size:211 final size:211
Alignment explanation
Indices: 12379982--12380393 Score: 554
Period size: 211 Copynumber: 2.0 Consensus size: 211
12379972 TAGGCATAAT
* * * * * * * *
12379982 GGAGTTCATTCCTAGTCTATGATCGGACCAGATCGAGGGTTGTGGCAGTAGGATCGATAGCATGC
1 GGAGTTAATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGACAGTAGGATCGACAGCATGC
* * * ** *
12380047 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCAC
66 AGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCCACAC
* ** *
12380112 ACTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCTGTCTTAGCATAAGGAGTTCATT
131 ACTCATTTCATGGGTTGACATAGGCATACGGAGTTCATTCCAAGTCTAAGCATAAGGAGTTCATT
12380177 CCCAGTCTTAGCATAC
196 CCCAGTCTTAGCATAC
*
12380193 GGAGTTAATTCCCAGTCTAAGATCAGACCAAATTGAGGGTTGCGACAGTAGGATCGACAGCATGC
1 GGAGTTAATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGACAGTAGGATCGACAGCATGC
* * * * * *
12380258 AGAGGGGGACCCGACCGATCCCCAGCTTATGCATCCCATCCTTCTGGTCGGCTGAGTGCCCACAC
66 AGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCCACAC
* * * * *
12380323 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCTTACGGAGTTCATT
131 ACTCATTTCATGGGTTGACATAGGCATACGGAGTTCATTCCAAGTCTAAGCATAAGGAGTTCATT
12380388 CCCAGT
196 CCCAGT
12380394 GTAAGATCGG
Statistics
Matches: 171, Mismatches: 30, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
211 171 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (211 bp):
GGAGTTAATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGACAGTAGGATCGACAGCATGC
AGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCCACAC
ACTCATTTCATGGGTTGACATAGGCATACGGAGTTCATTCCAAGTCTAAGCATAAGGAGTTCATT
CCCAGTCTTAGCATAC
Found at i:12381285 original size:26 final size:26
Alignment explanation
Indices: 12381249--12381301 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12381239 GTTGACTTAG
*
12381249 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
* *
12381275 GCATGCAGAGTTCATTCTCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
12381301 G
1 G
12381302 ATCGGAACGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:12382865 original size:903 final size:901
Alignment explanation
Indices: 12380183--12382916 Score: 3653
Period size: 904 Copynumber: 3.0 Consensus size: 901
12380173 CATTCCCAGT
* * * * ** **
12380183 CTTA-GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAAATTGAGGGTTGCGACAGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAACAGGAT
* **
12380247 CGACAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTATGCATCCCATCCTTCTGG-TCGGCT
66 CG-CAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCCCTTCTGGCT-GGCT
* * * *
12380311 GAGTGCCCA-CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCT
129 GAGTG-CCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
* ** * * * *
12380375 TACGGAGTTCATTCCCAGTGTAAGATCGGATCAGAATGGGGGTTACGGTAGCACATG-TTGAGCT
193 TACGGAGTTCATTCCCAGTATAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGA-CT
* * * * * * * *
12380439 CAGGCTTGTGTTGGAGCCGCATTTTTCTTCCCCGGGGCACCA-TCACTAGAGCATCGCCGGAGAA
257 CGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATTAAC-GGAGCATCGCCGGAGAA
* * * * * * *
12380503 CCTT-ACTGGTGGCATTAGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATAATGTGC
321 CCTTAAC-GGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
* * * * *
12380567 GATGGGTACTAGTGCTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA
385 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12380632 CCCCCTTAAGGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATG
450 CCCCCTTAA-GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATG
*
12380697 GGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
514 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
* * * * * * *
12380762 GCATGCCAACCAAATTACAAGGATCACATCTACGAAGGTTGGGGGCAAAACTCTTTCCAAAAAAA
578 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
12380827 TTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAAGT-GTGAAAAATAGAAAACGAGTCATCTT
643 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA-TCGTGAAAAATAGAAAACGAGTCATCTT
12380891 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG-C
707 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGTC
* *
12380955 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGC
772 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * * * * *
12381020 GCATTCCGTTTCTCTGGCCGGCGTAGTGCCCACCTGCCCGCCCGCCCACTCGTTTTGTCGGTTGG
837 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGTCTGCCCGCCCACTCATTTTGTCGGTTGG
* * * * * *
12381085 CTTAGGCATACGGAGTTCATTCCCAATCGAAGATTGGATCC-GACCGAGGGTTAC-GTCAACAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGATCGAGGGTTGCGGT-AACAGG
* * * * * * ** * * *
12381148 ATTCCCAGCACGCAGAGGGGGGCCCGATCGATCCTCGACTTCCGCATCCCGCCCCTCTGGCCGAC
64 A-TCGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCCCTTCTGGCTGGC
*
12381213 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
128 TGAGTGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
* * * * * * * *
12381278 TGCAGAGTTCATTCTCAGTATAAGATCGGAACGGACCGAGGGTTGTGGCAGCACATACTGGGCTC
193 TACGGAGTTCATTCCCAGTATAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGACTC
* * * * *
12381343 GGGCATGTGCTGGTGCCGTATTTCTCTTCGCCGGGGCACCATCACCGGAGCATTGCCGGAGAACC
258 GGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATTAACGGAGCATCGCCGGAGAACC
* * * *
12381408 TGACCGGCGGCATTGGGGTTCCGATGATCGGGGGAGCCGAGGGGGGTGTGCACACATGATGTGCG
323 TTAACGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC--GGGGGGTGTGCACACATGATGTGCG
* *
12381473 ATGGCTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
386 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12381538 CCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGG
451 CCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGG
*
12381603 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTGTTTTGTG
515 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTG
*
12381668 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAAT
579 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* *
12381732 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAGTAGAAAACGAGTCATCTTGC
644 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
* *
12381797 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT-AT
709 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGTCAT
* *
12381861 TGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
774 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
* *
12381926 ATCCCGA-CTCTCTGGCCGGCGTAGTGCCTGCCCGTCTGCCCGCCCGCTCATTTTGTCGGTTGG
839 ATCCC-ATCTCTCTGGCCGGCGTAGTGCCCGCCCGTCTGCCCGCCCACTCATTTTGTCGGTTGG
* *
12381989 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGCTTGCGGTAACAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAACAGGAT
* * * *
12382054 CAGTAGCATGCAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGCTGGCTG
66 C-GCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCCCTTCTGGCTGGCTG
** * * *
12382119 AACGCCAGCACGCTCGTTTCGTGGTTTGATTTAGGCATACAGAGTTAATTCCCAGTCTAAGCATA
130 AGTGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* * * * * *
12382184 CGGTGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTCGCGGCAGTAAATGCTGGACTTGG
195 CGGAGTTCATTCCCAGTATAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGACTCGG
* * ** *
12382249 GCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCGTCGGAGAACCTT
260 GCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATTAACGGAGCATCGCCGGAGAACCTT
* * * * *
12382314 AACGGCAGAATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGCTGTGCACACATGATGTGCAAAGG
325 AACGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGG
12382379 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
390 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
12382444 TTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGAC
455 TTA-AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGAC
* * * * *
12382509 ACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCGAGTTTTTGGCTAAATTTTTGGGTGCATG
519 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TGTGCATG
* * ** *
12382574 GCAACAAAAAGATGAGGAT-ACCGTCTACCAAGTTTGGGGCCAAAGCTCCTT-CAAAAAAATTTA
583 CCAACAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT-
* * * *
12382637 AAAAAAATCTCAAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
646 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
*
12382702 TGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GTCATTG
711 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGTCATTG
*
12382766 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
776 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
** *
12382831 CCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGTCT----G----CTCATTTCATCGATTGG
841 CCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGTCTGCCCGCCCACTCATTTTGTCGGTTGG
*
12382884 CTTAGGCTTACGGAGTTCATTCCCAGTCTAAGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
12382917 ATACAGAGTT
Statistics
Matches: 1599, Mismatches: 207, Indels: 59
0.86 0.11 0.03
Matches are distributed among these distances:
895 45 0.03
899 1 0.00
901 5 0.00
902 252 0.16
903 501 0.31
904 560 0.35
905 233 0.15
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAACAGGAT
CGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCCCTTCTGGCTGGCTGA
GTGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTATAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGACTCGGG
CATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATTAACGGAGCATCGCCGGAGAACCTTA
ACGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGTCATTGGCACA
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCAT
CTCTCTGGCCGGCGTAGTGCCCGCCCGTCTGCCCGCCCACTCATTTTGTCGGTTGG
Found at i:12384274 original size:26 final size:26
Alignment explanation
Indices: 12384234--12384284 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12384224 TGACTTAGGT
* *
12384234 ATACGGAGTTTATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
12384260 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
12384285 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:12385130 original size:26 final size:26
Alignment explanation
Indices: 12385094--12385172 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12385084 GTTGACTTAG
12385094 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
12385120 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
* *
12385146 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
12385172 G
1 G
12385173 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:12386530 original size:718 final size:718
Alignment explanation
Indices: 12385153--12386548 Score: 2217
Period size: 718 Copynumber: 1.9 Consensus size: 718
12385143 TAAGCATACG
** * *
12385153 GAGTTCATTCCCAGTTTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCAAAC
1 GAGTTCATTCCCAGTCCAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCAAAC
* * ** *
12385218 ATGTGCTAGTGCCAGATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCGCCGGAGAACCTGAC
66 ATGTGCTAGTGCCAGATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAAAACCTGAC
* * *
12385283 CGACGGAATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGG
131 CGACGGAATTGGGGTTCCGATGAACGGAGGGGCCGGGGGGGTTGTGCACACATGATGTGCGATGG
12385348 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
196 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * * *
12385413 TTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCCATTCAAGTGTTTGAAATAGGGAC
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATAGGGAC
*
12385478 ACTCTTTTCAAATGGTCACAAAATATTGTTCACCTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
326 ACTCTTTTCAAATGGTCACAAAATATTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
12385543 CCAGCAAAAATACAATGATCACGTGTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAATTTTA
391 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAAGTTTA
* *
12385608 AAAAATCTCAAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATG
456 AAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATG
*
12385673 AAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCA
521 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
12385738 TGTAGAAATATGAAGATGTGCCTAAACCTACCTGCCACCCTATCGATCCACGGCTTGCGTATCCC
586 TGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGTATCCC
*
12385803 ATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTCGCTTGCTCGTTGCGTCGGTTGGCTTAGTC
651 ATCTCTCTGGC-CG-GTAGTGCCCGCCCGCCCGCTCGCTTGCTCGTTGCGTCGGTTGGCTTAGTC
12385868 ATATA
714 ATATA
** * * ***
12385873 GAGTTCATTCCCAGTCCAAGATTGGACTGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCCAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCAAAC
* *
12385938 ATGTGCTGGTGTC-GCATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAAAACCTGA
66 ATGTGCTAGTGCCAG-ATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAAAACCTGA
* *
12386002 CCGGCGGCATTGGGGTTCCGATGAACGGAGGGGCC-GGGGGG-TGTGCACACATGATGTGCGATG
130 CCGACGGAATTGGGGTTCCGATGAACGGAGGGGCCGGGGGGGTTGTGCACACATGATGTGCGATG
*
12386065 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
12386130 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAAT-GAGG
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATAG-GG
* * * *
12386194 ACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTCTTTTCAAATGGTCACAAAATATTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * **
12386259 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATACCTTTGGAAAAAAGTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAAGTT
* *
12386324 TAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCCTT-CC
454 TAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGT-CTTGCC
12386388 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
12386453 GCATGCAGAGATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGTAT
583 GCATGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGTAT
* *
12386518 TCCGTCTCTCTGGCCGGTAGTGCCCGCCCGC
648 CCCATCTCTCTGGCCGGTAGTGCCCGCCCGC
12386549 TCACCCACCC
Statistics
Matches: 618, Mismatches: 55, Indels: 10
0.90 0.08 0.01
Matches are distributed among these distances:
716 15 0.02
717 2 0.00
718 451 0.73
719 10 0.02
720 140 0.23
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (718 bp):
GAGTTCATTCCCAGTCCAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCAAAC
ATGTGCTAGTGCCAGATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAAAACCTGAC
CGACGGAATTGGGGTTCCGATGAACGGAGGGGCCGGGGGGGTTGTGCACACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATAGGGAC
ACTCTTTTCAAATGGTCACAAAATATTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAAGTTTA
AAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGTATCCC
ATCTCTCTGGCCGGTAGTGCCCGCCCGCCCGCTCGCTTGCTCGTTGCGTCGGTTGGCTTAGTCAT
ATA
Found at i:12388588 original size:26 final size:26
Alignment explanation
Indices: 12388558--12388610 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12388548 GTTGACTTAG
*
12388558 GCATACGGAGTTCATTCCCAA-TCTAA
1 GCATACAGAGTTCATT-CCAAGTCTAA
12388584 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
12388610 G
1 G
12388611 ACCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:12390396 original size:26 final size:26
Alignment explanation
Indices: 12390360--12390412 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12390350 GTCGACTTAG
*
12390360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12390386 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12390412 G
1 G
12390413 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:12390822 original size:901 final size:900
Alignment explanation
Indices: 12385867--12396772 Score: 9286
Period size: 901 Copynumber: 12.0 Consensus size: 900
12385857 TTGGCTTAGT
* * * * *
12385867 CATATAGAGTTCATTCCCAGTCCAAGATTGGACTGAACCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGAAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * ** ** *
12385932 TCGGGCATGTGCTGGTGTCGCATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAA-A
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC-GAAGA
* * * * * *
12385996 ACCTGACCGGCGGCATTGGGGTTCCGATGAACGGAGGGGCCGGGGGGTGTGCACACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCG-TCATCGGGGGGGGCAGGGGGTGTGCGCACATGATGTGC
* *
12386061 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12386126 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12386191 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
12386256 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TACCTTTGGAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAA
* * ** * * *
12386320 AGTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCCT
452 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT-CT
12386385 T-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12386449 ATTGGCATGCAGAGATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
12386514 GTATTCCGTCTCTCTGGCC-G-GTAGTGCCCGCCCG-CTCACCCACCCACTCGTTTCGTCAGTTG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-GCCCGCCCGCTCATTTCGTCGGTTG
* * *** * ***
12386576 GCTTAGGCATACGAACTTCATTCCCAGTCTAAGAAGGGACCATTGTA-TGAATTTATAAGCCAAA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCA--G-ACCGAGGGT-T--G-----
* * * ***** *
12386640 AAAATGGTATTGACATGTAGAAATATGAAG-ATGTAC-CTAAACCCACCTACCACCTTATCGATC
764 ----TGGTA--G-CA-G--G--AT-CG--GCA-GCACGC-AGA--GGGGGA-C-CC--ACCGATC
* * * ** * * ** * ** ** *
12386703 CGCAGCTTACTTATCTCGTCTATTTGGCCGGC-GTAGTGCCCGC-CGC-CG---CG-CCGCTGCA
806 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG-AGCACCCGCACGCTCGTTTCGTGTGTTG-A
** *
12386761 C--CCGCAT-C---GTTCA-T--CAGTTGCTTAGG
869 CTTAGGCATACGGAGTTCATTCCCAG-T-C-TAAG
** * *
12386787 CATATGGAGTTTCATTCCTAGTCTAAGATC-ACGACCGACCGAGGG-TGCGGCAGCACATGCTTG
1 CATACAGAG-TTCATTCCCAGTCTAAGATCGA--ACGGACCGAGGGTTGCGGCAGCACATGC-TG
* ** **
12386850 GGCTCAGGCATGTGCTGGTTGCTGCATTTTT-TTGGCCGGTGGCA-CATCGTCGGAGCATCGTCG
62 GGCTCGGGCATGTGCTGG-TGCCACATTTTTCTTCACCGG-GGCACCATCGTCGGAGCATCGTCG
* * *
12386913 -AGAACCTGACCGGTGGCAATTGGGGGTT-CGACGATC-GGGGGGGCCGAGGGGTGTGCGCACAT
125 AAGAACCTGACCGGCGGC-ATT-GGGGTTCCGTC-ATCGGGGGGGGCAG-GGGGTGTGCGCACAT
* * * *
12386975 GATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCTCTCGTCAAACCTCGATA
186 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
12387039 ACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTT
251 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
12387104 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATT
316 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * **
12387169 TTTTTGTGCATGCCAACAAAACTACAACGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTG
381 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
12387234 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
446 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
12387299 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
511 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
12387364 ATGGCATTGGCATGCAGAGATAGGAAGATGCGCCTAAACCCACCTACCACCCTATCAATCCACGG
576 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
12387429 CTTGCGTATTCCGTCTCTCTGGCC-G-GTAGTGCCCGCCCG-CTCACCCGCCCACTCGTTTCGTC
641 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-GCCCGCCCGCTCATTTCGTC
* * * **
12387491 GGTTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATTAGACCAGACCGTA-GGCTGCAGTA
705 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCG-AGGGTTGTGGTA
** * * * ** * * *
12387555 GCAGGATCAACAGCACGTAGAGGGGCACCCAGCTGATCCCCGGCTTATGCGTCCTGCTCCTCTGG
769 GCAGGATCGGCAGCACGCAGAGGGGGACCCA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
12387620 CCGGCTGAGCACCCGCACGCTCGTTTCATGTGTTGACTTAGGCATACAGAGTTCGTTCTCAGTGT
833 CCGGCTGAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
12387685 AAG
898 AAG
* * * * *
12387688 CATAAAAAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCACATGCTAGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGAA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * *
12387753 TCGGGC-TCGTGCTGGTGCTACATTTTTCTTCATCGAGGCACCATCGTCAGAGCATC-CCTGGAG
65 TCGGGCAT-GTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC-GAAG
* * * * * * *
12387816 ACCCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGCGGTGTACGCACATGATG
128 AACCTGACCGGCGGCATTGGGGTTCCGTC-ATCGGGGGGGGC-AGGG-GGTGTGCGCACATGATG
*
12387881 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12387946 ACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
12388011 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
12388076 TTTGCAAGCCAACAAAAATACAGGGATCATGTCTACCAAGTTT-GGGCCAAAACGCCTTCCAAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
12388140 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTC
450 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
12388205 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATG
12388270 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
579 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
12388335 GCGCATCCCGTCTCTCTGGCCGGCGTA--G--CG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTT
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTT
* * *
12388392 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATT-GAACCAGGA-TGAGGGTTGTGGCAGCA
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCA-GACCGAGGGTTGTGGTAGCA
** * * * * * *
12388455 GGATCAACAGCACGCAGAGGGGGATCCAGTCGATCCTCGGCTTGCGCATCCCGCCCATCTAGTCG
772 GGATCGGCAGCACGCAGAGGGGGACCCA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * *
12388520 ACTGAGCGCCCGCACGATCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
836 GCTGAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * *
12388585 CATACAGAGTTCATTCCAAGTCTAAGACCGGACCGGACCGAGGGTTGCCACAGCACATGCTAGAC
1 CATACAGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
12388650 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGGCGGAGCATCG-CCAGAGA
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGA-AGA
* * * *
12388714 ACTTGACCGACGGCATTGGGGTTCTAG-CGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTC-CGTC-ATCGGGGGGGGC-AGGGGGTGTGCGCACATGATGT
12388778 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12388843 CACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
12388908 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-A-TTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12388971 GTGCATACCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCATTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
12389036 AATTTAAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTGAAAAATAGAAAACGAGTCGCC
451 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12389100 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
12389165 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12389230 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACT----GCCCACTCATTTTGTCAGTCG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTG
* * * * * *
12389291 ACTTAGGCATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCAAGGGTTGTGATAGTAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGTAGCAGGA
* * * * * * * * *
12389356 TCGGCAGGACGCTA-AGGGGGAACCAGTCGATCCCTGGCTTGAGCTTTCTGCTCCTCTGGCCGGC
775 TCGGCAGCACGC-AGAGGGGGACCCA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
12389420 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCGAAA
838 TGAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * **
12389483 CGTACAGAGCTCATTTCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * ** *
12389548 TCGGGCAAGTGCTGGTGCCCCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGAA
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGAA
** * * * * * *
12389613 CCTGACCAACGACATTAGGGTTCTGGTGATC-GGGAGGGCTGAGGGGGTGTGCGCACATGATGTA
130 CCTGACCGGCGGCATTGGGGTTC-CGTCATCGGGGGGGGC--AGGGGGTGTGCGCACATGATGTG
*
12389677 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12389742 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGACAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12389807 GGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGATTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12389872 TACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
12389937 ATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
12390002 GCCATGAAACTTCACATGAAGGCTTAAGTGACCATTGTAAGAATTTAGAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12390067 TTGGCATGCAGAAATATAAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12390132 CTTCCTGTCTCTCTGGCCGGCATAGTGCCCGTCCGCCTGCCCACCCGCTCATTTCGTCAGTTGGC
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTGGC
* * *
12390197 TTAGGCATAAGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGTGGTAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGTAGCAGGATC
*
12390262 GGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
777 GGCAGCACGCAGAGGGGGACCC-ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
12390327 GCGCGCGCACGCTCGTTTCGTGTGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
841 GCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
12390387 CATACGGAGTTCATTCCCAGCCTAAGATCGAACCAGG-GCGAGGGGTGCAGCAACACATGCTGAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCGAA-C-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
12390451 CTCGAGCATGTGTTGGTGCTACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGAAGA
64 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGA
** *
12390516 ACCTGACCGGTAGCATTGGGGTTCCCTCATCGGGGGGGGCAGGGGGTGTGCGCACAT-ATGTGCG
129 ACCTGACCGGCGGCATTGGGGTTCCGTCATCGGGGGGGGCAGGGGGTGTGCGCACATGATGTGCG
* *
12390580 ATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
12390645 CCCCTTAAAGAGCAATTAAGATTTTACAAGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12390710 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
12390775 CATGCCAACAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
12390840 TTTAAAAAATCACGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
454 TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
12390905 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
12390970 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGTA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * * *
12391035 TCCCGTCTCTCTGGCCGACGTAGTGCCTACCCGTCC-GACCGCCCGCTCATTTCATCGATTGGCT
649 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCTGCCCGCCCGCTCATTTCGTCGGTTGGCT
* * * * * * *
12391099 TAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGACCAGATCGAGGGTTGCGGCAGTAGGATTG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGTAGCAGGATCG
*
12391164 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAG
778 GCAGCACGCAGAGGGGGACCC-ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
12391229 CGCTCGCACGCTAGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
842 CACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
**
12391288 -AT-C---G---A-----A--C------C--A--GACCGAGGGTTTTGGCAGCACATGCTGGGCT
1 CATACAGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * * **
12391328 CGAGCAGGTGCTGATGCCACATTTTTCTTCGCCAGGGCACAATCGCCGGAGCATCACCGAAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGAAC
* * * ** * **
12391393 CTGACCGGCGGCATTAGGGTTCCGGTGATTGAAGGGCCGG-AGGGAGTGTGCGCAGGTGATGTGC
131 CTGACCGGCGGCATTGGGGTTCC-GTCATCG--GGGGGGGCAGGGGGTGTGCGCACATGATGTGC
* *
12391457 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCTCA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12391522 CCCCCTCAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12391587 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAAGTTTTTAGCTGATTTTTTTTG
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTG
* * * *
12391651 TGCATGCCAAAAAAAATACAAGGATCCCCTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12391716 ATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCAG-AAAAAATAGAAAACGAGTCGTCT
452 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTCT
* * **
12391780 TGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGAAATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12391845 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGACTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12391910 GCATCCCGTCTCTCTGGCCAGCGTAGTGCTCG--C-CC-GCCCGCCCGTTCGTTTCGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTGG
** * *
12391971 CTTAGATATACGGAGTTCATTCCCAGTTTGAGATT-GAACCAGACCGA-GG--GT--T------A
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACCGAGGGTTGTGGTAGCAGGA
* * * * * *
12392024 -CGGCAGCACGCAGAGGGGGACCCGACCGATCTCCGGCTTGCTCATCCTGCCCCTATGGCTGTCT
775 TCGGCAGCACGCAGAGGGGGACCC-ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
12392088 GAGTAACCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
839 GAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
12392150 CATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGAAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
12392215 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCTCCATC-ACTGGAGCATCACTCG-AG
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTC-GGAGCATC-GTCGAAG
* * * *
12392278 AACCTGACCGGCGGCATTGGGGTTCCGACGATCTGGGGGGCCAGGGGGGTGTGCGCACATAATGT
128 AACCTGACCGGCGGCATTGGGGTTCCGTC-ATCGGGGGGGGCA-GGGGGTGTGCGCACATGATGT
* * *
12392343 GCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12392408 CACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12392473 TGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
12392538 GTGCATGCCAACAAAAATAAAAGGATCACGTCTGCCAATTTTGGGGCCAAAACACCTTTCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
12392603 AATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACCAGTCGTCT
451 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
12392668 TGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** ** ** *
12392733 ATTGGCACACAGAAATATGAAGATGTGTGTAAACCCAAATACCACCCTATCGATCCACGGCTTGT
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * **
12392798 GCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCTGCCCGTCCGCTTGCTCATTTCGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTGG
* * * * *
12392863 CTTAGGCATACGGAGTCCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGTAGCAGGAT
* * * ** * * *
12392928 TGGTAGCACGCAAAGGGGGACCCTTTCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGTTG
776 CGGCAGCACGCAGAGGGGGACCC-ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
12392993 AGCACCCGCATGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCCAAG
840 AGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
12393054 CGTACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** * * * *
12393119 TCGGGCATGTGTTGGTGTCGTATTTTTCTTCGCGGGGGCACCATCGTCGGAACATCGTCGGAGAA
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGAA
* * * * * * * *
12393184 CCTAATCGACGGCATTGGGGTTCCGACGATC-GGGGGTGCCGGGGGT-TGACTTAGGCATACGGA
130 CCTGACCGGCGGCATTGGGGTTCCGTC-ATCGGGGGGGGCAGGGGGTGTG-C----GCACA-TGA
* ** * ** ** ** * * *
12393247 -GTTC-ATTTCCAGT-CTAGGATCAGATTGGGTCGAAGGTTACGGCAGCAC-ATGCTGGGCTCGA
188 TGTGCGA--T-GGGTGCT-GG-T-A-CTTGGCCCTTATATT--GGC-CCCCTAT-C---CCTC-A
* *** * * * ** ** * *** * * * ** ** * ****
12393308 GCATGTGCTGGTG-TCGT-ATTTTTCTTCGTTTGGGCACCATCGTCAGAGCATCGCCGGAGAACC
238 TCA-AACCTCGAGAAC-TCA---CACCCCCTTAAAG-AGCAT-TTGAGA-TTTTACAGG-TTTGC
* * * *** * * *** ********* ** *
12393371 TGATCGGT-GGCATTGGGGT-TCCGACGATCGGGGGGGC-CGGGGGGTGTGCG-CACATGAT-GT
294 TG-CCAGTAGCCATTAAAGTGTCTGA-AAT-GGGGACACTTTTTTCAAATG-GTCACAAAATCTT
* * * * * ** * ** * * * * ** * *
12393431 GCGATGAGTGCTAGTACTTGGC--CCTTATATTG-GCCCCCTATCCCTCATCAAACCT-CGAGAA
355 G-TA-CACTTCGAGTTTTTAGCTGAATTTTTTTGTG----C-AT-GC-CAACAAAAATACAAGGA
** * *** **** * * * * * *
12393492 CTCACACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTC
411 -T--CA-CGTC-TACCA-AG--TTTG-G---GGCCAAAACTCCTTCC-G-A---A-AAAATTTTA
* *** ** ** * * * ** ** * *
12393556 TAAAATGGGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
458 AAAAATCCCGA-AC--CATAAAAAGT-TTCA-AAAATCGTG-AAAAAT--AG---AAAAC-GAGT
** * * * * * * *
12393620 TTTTTTGTGCATGCCAACATCAATACAAG-GATCATGTCTACCAAGTTTGGGGCCAAAATTGCAT
511 CGTCTTG-CCATG--AA-A-C--TTCACGTGA--A-GGCT--TAA----GGGACC---ATTG--T
** * ** ** **** *
12393684 CCAAAAATTTTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG-AAAAATA-GAAAAT
555 --ATGAA----TTT-ACAA----G--CCATAAAAA-TGGC-ATTGGCATGCAGAAATATG--AA-
* * * ** * ** *
12393747 GAGTCGTCTTGCCATGAAACTTCACGTGA--AGCCTTAAGGGA-CCATTGTATAAATTTACAAGC
602 GA-T-G---TGCC-T-AAAC-CCACCT-ACCA-CCCT-ATCGATCCA-CG-----GCTTGC--GC
**** ** ** * ** *** * * * * *
12393809 ATTAAAATGGCAT-TGGCATGCAAAAATA-TG-AAGATGTGCCTAAACCCACCTAC-CACCCTAT
648 A-TCCCGTCTC-TCTGGCCGGC----GTAGTGCCCG-CCCGCCT--GCCCGCC--CGC-TCATTT
** * * * ** ** * ** * * *
12393870 CGATC-CATGGCTTACGCATCCCGTCTCTC-TGGCCA-ACGT-AG-TGCCCGCCCGCGCGCCCGC
701 CG-TCGGTTGGCTTAGGCATACGGAGT-TCATTCCCAGTC-TAAGAT--TAG-AC-C-AGACCG-
** * * ***** ** *
12393930 TTATTCGTTTTGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCAGACGGGA-
757 --A---GGGTTGT-GG-TAGC--AGG-AT-CGGCAG--CA--CGCAGAGGGGGA-CCCAC-CGAT
** * * * *** * * * *** * ** * ** *
12393993 CCGAGGGTTGTG-A--CAGCAGGATC-GG-CAGCATGTGGAGGGGGAC-CT-G-ACCG-ATCCTC
805 CCCCGGCTTGCGCATCCCGC-CCCTCTGGCCGGC-TGAGCACCCGCACGCTCGTTTCGTGTGTTG
* * ***
12394049 AGCTTACGCATCTCGCCCCTTTTGCCGACTAAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAG
868 A-CTTAGGCAT-ACG---GAGTT--C-A-T-----TCC-CA-----G--TC------T-A---A-
12394114 G
900 G
**
12394115 CATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACT
1 CATACAGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G----A-A-CGGA-C---C-
* * * * * ** *
12394180 GAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGA
39 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
* * * * * * * * *
12394245 ACCATCGCCGGAG-AGTCATTGGAGAACCTGACCGTCAGCATT-GGGTTTCGACGAT-TGGGGGG
104 ACCATCGTCGGAGCA-TCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGTC-ATCGGGGGGG
* * * * *
12394307 CCGGGGGGTTGTGTGCACATGATGTACGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
167 GCAGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
12394372 TCCCTCATCAACCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
231 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
12394437 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
296 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
12394502 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAGAAATACAAGGATCACGTCTACCAAGT
361 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
12394567 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCACGAACCATAAAAA-TTTCAAAAATC
426 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATC
* *
12394631 ATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
491 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
12394696 TGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
556 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
12394761 ACCACCCTATCGATACACAGCTTGCGTATCCCGTCTCTCTGGCTGACGTAGTGCCCACCCGTCC-
621 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCT
* * * * * *
12394825 GACCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
685 GCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAC
* * * * **
12394890 CAAACCGAGGGTTGCGGTAGTAGGATTGGCAGCACGCAGAGGTTGACCCGACCGATCCCCGGCTT
750 CAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC-ACCGATCCCCGGCTT
* * ** * * *
12394955 GCGCATCCCACCCCTCTAGCCCACTGAGCGCTCGCACGCTAGTTTCGTGTGTTGACTTAGGCATA
814 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATA
12395020 CGGAGTTCATTCCCAGTCTAAG
879 CGGAGTTCATTCCCAGTCTAAG
*
12395042 -AT-C---G---A-----A--C-----T-----GGACCGAGGGCTT-TGGCAGCACATGCTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGG-TTGCGGCAGCACATGCTGGGC
* * * ** * * **
12395081 TCGGGCAGGTGCTGATGCCGCATTTTTCTTTGCCAGGGCACAATCGTCGGAGCATCACCGAAGAA
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGAA
* * * * ** * *
12395146 CCTGACCGGCGGCATTAGGATTCCGGTGATTCAAGGGTCGG-AGGGAGTGTGCGCACGTGATGTG
130 CCTGACCGGCGGCATTGGGGTTCC-GTCA-TC-GGGGGGGGCAGGGGGTGTGCGCACATGATGTG
* * *
12395210 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCTC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12395275 ACCCCCTCAATGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12395340 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAAGTTTTTAGCTGAATTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTT
* * *
12395404 GTGCATGCCAACAAAAATACAAGGATTC-CCTCTGCCAGGTTTGGGGCCAAAACTCCTTCCG---
386 GTGCATGCCAACAAAAATACAAGGA-TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
12395465 ---------AAAA--CAG-A--A-AAAAA-----AAAAA-C---------AGAAAACGAGTCGTC
450 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* **
12395500 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGAAATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12395565 CATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12395630 CGCATCCCGTCTCTCTGGCCAGCGTAGTGTCCG--C-CC-GCCCACCCGCTCGTTTCGTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTG
* * * * ** * *
12395691 GCTTAGGTATACGAATTTCATTCCCAGTCTGAGATCGGGCCAGACTGA-GG--GT--T------A
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGTAGCAGGA
* * * * * * *
12395745 -CGGCAACACGCAGAGGGGGACCCAACCGATCTCCGACTTGCTCATCCCGCCCCTATGGCTGTCT
775 TCGGCAGCACGCAGAGGGGGACCC-ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** *
12395809 GAGTGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
839 GAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
12395871 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * * *
12395936 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCGGGGGCGCCATC-ACTGGAGCATC-ACTGGAG
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTC-GGAGCATCGTC-GAAG
* * * *
12395999 AACCTGACCGGCGGCATTGGGGTTCCGACGATCTGGGGGGCCAGGGGCGTGTGCGCACATAATGT
128 AACCTGACCGGCGGCATTGGGGTTCCGTC-ATCGGGGGGGGCAGGGG-GTGTGCGCACATGATGT
* *
12396064 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
12396129 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12396194 TGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12396259 GTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAATTTTGGGGCCAAAACACCTTTCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
12396324 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCACAAATCGTGAAAAATAGAAAAAC-AGTCGTC
451 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTC
*
12396388 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** ** **
12396453 CATTGGTACACAGAAATATGAAGATGTGTGTAAACCCAAATACCACCCTATCGATCCA-GGCTTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** *
12396517 CGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCTTGCTCATTTTGTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTG
* * * * *
12396582 GCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGTAGCAGGA
* * * ** * * *
12396647 TTGGTAGCACGCAAAGGGGGACCCTTTCGATCCCCGACTTGCACATCCCG-CCCTCTGGCCGGTT
775 TCGGCAGCACGCAGAGGGGGACCC-ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
12396711 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
839 GAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12396773 ATCAGACTAG
Statistics
Matches: 8112, Mismatches: 1354, Indels: 1058
0.77 0.13 0.10
Matches are distributed among these distances:
829 108 0.01
830 3 0.00
831 1 0.00
834 1 0.00
836 1 0.00
837 1 0.00
838 1 0.00
840 2 0.00
841 62 0.01
842 1 0.00
843 1 0.00
844 1 0.00
845 162 0.02
849 1 0.00
853 4 0.00
854 14 0.00
855 354 0.04
856 1 0.00
859 5 0.00
860 1 0.00
862 114 0.01
863 4 0.00
864 1 0.00
865 4 0.00
867 5 0.00
869 2 0.00
870 2 0.00
871 1 0.00
872 1 0.00
873 8 0.00
874 65 0.01
875 184 0.02
876 16 0.00
877 267 0.03
878 466 0.06
879 6 0.00
880 4 0.00
883 1 0.00
885 1 0.00
886 5 0.00
887 39 0.00
888 679 0.08
889 10 0.00
890 32 0.00
891 67 0.01
892 64 0.01
893 5 0.00
894 145 0.02
895 143 0.02
896 208 0.03
897 329 0.04
898 517 0.06
899 30 0.00
900 360 0.04
901 711 0.09
902 279 0.03
903 336 0.04
904 547 0.07
905 10 0.00
906 10 0.00
907 5 0.00
908 4 0.00
909 1 0.00
910 1 0.00
911 8 0.00
913 5 0.00
914 4 0.00
915 1 0.00
917 5 0.00
918 7 0.00
919 11 0.00
920 533 0.07
921 129 0.02
922 26 0.00
923 4 0.00
924 16 0.00
925 22 0.00
926 21 0.00
927 2 0.00
928 3 0.00
929 4 0.00
930 8 0.00
931 1 0.00
932 3 0.00
933 3 0.00
934 2 0.00
936 4 0.00
937 1 0.00
938 2 0.00
940 6 0.00
942 1 0.00
945 3 0.00
946 15 0.00
947 2 0.00
948 1 0.00
949 7 0.00
950 8 0.00
951 4 0.00
952 4 0.00
953 19 0.00
954 1 0.00
955 6 0.00
956 13 0.00
957 14 0.00
958 10 0.00
959 10 0.00
960 6 0.00
961 3 0.00
962 5 0.00
963 2 0.00
964 4 0.00
965 2 0.00
966 3 0.00
968 5 0.00
969 1 0.00
970 5 0.00
971 26 0.00
972 9 0.00
973 5 0.00
974 2 0.00
975 7 0.00
976 2 0.00
977 2 0.00
978 8 0.00
979 5 0.00
981 3 0.00
983 3 0.00
984 3 0.00
986 4 0.00
987 9 0.00
988 6 0.00
989 1 0.00
990 12 0.00
991 8 0.00
992 5 0.00
993 3 0.00
994 2 0.00
995 3 0.00
996 7 0.00
997 8 0.00
998 10 0.00
999 1 0.00
1000 6 0.00
1001 9 0.00
1002 5 0.00
1004 3 0.00
1005 3 0.00
1007 2 0.00
1009 6 0.00
1010 8 0.00
1011 2 0.00
1012 1 0.00
1013 10 0.00
1014 2 0.00
1015 4 0.00
1016 9 0.00
1017 26 0.00
1018 4 0.00
1019 1 0.00
1020 6 0.00
1022 3 0.00
1023 2 0.00
1024 5 0.00
1025 14 0.00
1026 25 0.00
1027 11 0.00
1028 9 0.00
1029 20 0.00
1030 13 0.00
1031 15 0.00
1032 23 0.00
1033 14 0.00
1034 16 0.00
1035 21 0.00
1036 20 0.00
1037 9 0.00
1038 14 0.00
1039 5 0.00
1040 8 0.00
1041 2 0.00
1042 9 0.00
1043 16 0.00
1044 6 0.00
1045 2 0.00
1046 2 0.00
1047 2 0.00
1048 3 0.00
1049 8 0.00
1050 2 0.00
1051 1 0.00
1052 5 0.00
1053 8 0.00
1054 1 0.00
1055 5 0.00
1056 4 0.00
1057 3 0.00
1058 6 0.00
1059 14 0.00
1060 18 0.00
1061 26 0.00
1062 1 0.00
1063 65 0.01
1064 22 0.00
1065 26 0.00
1066 12 0.00
1067 22 0.00
1068 15 0.00
1069 5 0.00
1070 18 0.00
1071 60 0.01
1072 12 0.00
1073 6 0.00
1074 11 0.00
1075 13 0.00
1076 12 0.00
1077 3 0.00
1078 8 0.00
1079 1 0.00
1080 2 0.00
1081 5 0.00
1082 9 0.00
1083 8 0.00
1084 1 0.00
1086 25 0.00
1087 91 0.01
1088 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGAAC
CTGACCGGCGGCATTGGGGTTCCGTCATCGGGGGGGGCAGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCA
GCACGCAGAGGGGGACCCACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
CGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:12392159 original size:26 final size:26
Alignment explanation
Indices: 12392123--12392175 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12392113 GTTGACTTAG
12392123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12392149 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12392175 G
1 G
12392176 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12393054 original size:26 final size:26
Alignment explanation
Indices: 12393025--12393075 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12393015 GGGTTGACTT
12393025 AAGCATACGGAGTTCATTCCCAGTCC
1 AAGCATACGGAGTTCATTCCCAGTCC
*
12393051 AAGCGTACGGAGTTCATTCCCAGTC
1 AAGCATACGGAGTTCATTCCCAGTC
12393076 TAAGATCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (26 bp):
AAGCATACGGAGTTCATTCCCAGTCC
Found at i:12393368 original size:185 final size:185
Alignment explanation
Indices: 12393056--12393413 Score: 536
Period size: 185 Copynumber: 1.9 Consensus size: 185
12393046 AGTCCAAGCG
* * *
12393056 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGCAGCACATGCTGGGCTC
* * * *
12393121 GGGCATGTGTTGGTGTCGTATTTTTCTTCGCGGGGGCACCATCGTCGGAACATCGTCGGAGAACC
66 GAGCATGTGCTGGTGTCGTATTTTTCTTCGCGGGGGCACCATCGTCAGAACATCGCCGGAGAACC
*
12393186 TAATCGACGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGTTGACTTAGGCA
131 TAATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTTGACTTAGGCA
* * * **
12393241 TACGGAGTTCATTTCCAGTCTAGGATCAGATTGGGTCGAAGGTTACGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGCAGCACATGCTGGGCTC
*** *
12393306 GAGCATGTGCTGGTGTCGTATTTTTCTTCGTTTGGGCACCATCGTCAGAGCATCGCCGGAGAACC
66 GAGCATGTGCTGGTGTCGTATTTTTCTTCGCGGGGGCACCATCGTCAGAACATCGCCGGAGAACC
* **
12393371 TGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
131 TAATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
12393414 GTGTGCGCAC
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
185 153 1.00
ACGTcount: A:0.17, C:0.22, G:0.35, T:0.25
Consensus pattern (185 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGCAGCACATGCTGGGCTC
GAGCATGTGCTGGTGTCGTATTTTTCTTCGCGGGGGCACCATCGTCAGAACATCGCCGGAGAACC
TAATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTTGACTTAGGCA
Found at i:12394150 original size:26 final size:26
Alignment explanation
Indices: 12394114--12394166 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12394104 GTTGACTTAG
*
12394114 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12394140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12394166 G
1 G
12394167 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12394645 original size:26 final size:26
Alignment explanation
Indices: 12394589--12394645 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
12394579 CTCCTTTCGA
**
12394589 AAAAATTTTAAAAAATCACGAACCAT
1 AAAAATTTTAAAAAATCACGAAAAAT
* *
12394615 AAAAA-TTTCAAAAATCATGAAAAAT
1 AAAAATTTTAAAAAATCACGAAAAAT
12394640 AGAAAA
1 A-AAAA
12394646 CAAGTCGTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.63, C:0.11, G:0.05, T:0.21
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCACGAAAAAT
Found at i:12395880 original size:26 final size:26
Alignment explanation
Indices: 12395844--12395896 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12395834 GTTGACTTAG
12395844 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12395870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12395896 G
1 G
12395897 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12397052 original size:185 final size:185
Alignment explanation
Indices: 12396734--12397106 Score: 563
Period size: 185 Copynumber: 2.0 Consensus size: 185
12396724 CTCATTTCGT
* *
12396734 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCA
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAAGGTTACGGCA
* * *
12396799 GCACATGCTGGGCTCAGGCATGTGTTGGTGTCGTATTTTTCTTCGCGGGGGCACCATCGCCGGAG
66 GCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTATTTTTCTTCGCGCGGGCACCATCGCCAGAG
*
12396864 CATCGTC-GGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGTGCCGG
131 CATCG-CAGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * * *
12396919 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGATTGGATCGAAGGTTACGGCA
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAAGGTTACGGCA
* *
12396984 GCACATGCTGGGCTC-GAGCATGTGCTGGTGTCGTATTTTTCTTTGTC-CGGGCACCATCGTCAG
66 GCACATGCTGGGCTCAG-GCATGTGCTGGTGTCGTATTTTTCTTCG-CGCGGGCACCATCGCCAG
* * *
12397047 AGCATCGCAGGAGAACCTGACCGGTGGTATTGGGGTTCCGACGATCGGGGGGGCCGG
129 AGCATCGCAGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
12397104 GGG
1 GGG
12397107 GGTGTGCGCA
Statistics
Matches: 170, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
184 2 0.01
185 167 0.98
186 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.35, T:0.24
Consensus pattern (185 bp):
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAAGGTTACGGCA
GCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTATTTTTCTTCGCGCGGGCACCATCGCCAGAG
CATCGCAGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
Found at i:12397843 original size:26 final size:26
Alignment explanation
Indices: 12397807--12397859 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12397797 GTTGACTTAG
*
12397807 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12397833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12397859 G
1 G
12397860 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12399213 original size:717 final size:716
Alignment explanation
Indices: 12397833--12399295 Score: 2110
Period size: 717 Copynumber: 2.0 Consensus size: 716
12397823 CCCAGTCTAA
* * * * ** * * * *
12397833 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTACGACAACACATGCTGG
1 GCATACGGAGTTCATTCGCAGTCTAAGATC-GATCGAATC-ATGCATTGCGAGAGCACTTGCTGG
* * * * * * **
12397897 GCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGTCGGGGCACCATCGCCAGAGCGTCGTTGGAG
64 GCTCGGGCATCTGCTGGTGTCGCATTTTTCTTCGCCAGAGCACCATCGCCAGAGCATCGCCGGAG
* * * *
12397962 AACCTGACCGACAGCATTGGGTTCCGACGATCGGGGGGCCGGGGTGGTGTGCGCACATGATGTAC
129 AACCTGACCGACAGCATTGGGTTACGACAATCGGGGGGCAGGGGTGGTGTGCACACATGATGTAC
** ** *
12398027 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACGCACA
194 GATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGCAAA
*
12398092 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12398157 GGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTT
324 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTTTGT
* **
12398222 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTCGCCAAAACTCCTTCCGAAAAAA
389 GCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAA
*
12398287 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCTTCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTG
12398352 CCATGAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12398417 TGGCCCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
* * *
12398482 ATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCACGCGCCCGCTCGTTTCGTCGGTTGGGT
649 ATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCACCCACCCGCTCGTTTCGTCAGTTGGGT
12398547 TAG
714 TAG
12398550 GCATAC-GACGTTCATTAC-CAGTCTAAGATCGATCGAATCATGCATTGCGAGAGCACTTGCTGG
1 GCATACGGA-GTTCATT-CGCAGTCTAAGATCGATCGAATCATGCATTGCGAGAGCACTTGCTGG
* * *
12398613 GCTTGGGCATCTGCTGGTG-CTGCATTTTTCTTCGCCAGAGCACCATCGTCGGAGCATCGCCGGA
64 GCTCGGGCATCTGCTGGTGTC-GCATTTTTCTTCGCCAGAGCACCATCGCCAGAGCATCGCCGGA
* * *
12398677 GAACCTGACCGGCGGCATTAGGGTTACGGCAATCGGGGGGTCAGGGGTGGTGTGCACACATGATG
128 GAACCTGACCGACAGCATT-GGGTTACGACAATCGGGGGG-CAGGGGTGGTGTGCACACATGATG
** * * *
12398742 TGTGATGGGTGCTGGTGCTTCACCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCAAGAACTC
191 TACGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGC
* *
12398807 AAACCCCCTTAAAGAGCATTTCAGATTTTACCGGTTTGCTGGCAGT-GCCATTAAAGTGTCTGAA
256 AAACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12398871 ATGGGGATACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTT
321 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTT
*** * *
12398936 TGTGTGTGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGATCCAAAACTCCTTCCGAGA
386 TGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAA
* * * * * *
12399001 AAATTTTAAAAAATCTCGAACTGTAAAATGTTTCGAAAATCATGAAAAACAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTC
12399066 TTGCCATGAAACTTCACGTGAAGGCTTATA-GGACCATTGTATGAATTTACAAGCCATAAAAATG
516 TTGCCATGAAACTTCACGTGAAGGCTT-TAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** **
12399130 GCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCATGCTATCGATCCACGGCTT
580 GCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
12399195 ACGCATCCCGTGTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCACCTGCTCTTTTCGTCAGTT
645 ACGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCACCCACCCGCTCGTTTCGTCAGTT
*
12399260 GGTTTAG
710 GGGTTAG
12399267 GCATACGGAGTTCATTCGCAGTCTAAGAT
1 GCATACGGAGTTCATTCGCAGTCTAAGAT
12399296 TGGATCGGAT
Statistics
Matches: 660, Mismatches: 77, Indels: 18
0.87 0.10 0.02
Matches are distributed among these distances:
715 2 0.00
716 93 0.14
717 440 0.67
718 125 0.19
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (716 bp):
GCATACGGAGTTCATTCGCAGTCTAAGATCGATCGAATCATGCATTGCGAGAGCACTTGCTGGGC
TCGGGCATCTGCTGGTGTCGCATTTTTCTTCGCCAGAGCACCATCGCCAGAGCATCGCCGGAGAA
CCTGACCGACAGCATTGGGTTACGACAATCGGGGGGCAGGGGTGGTGTGCACACATGATGTACGA
TGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGCAAACC
CCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTTTGTGC
AAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
CCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCACCCACCCGCTCGTTTCGTCAGTTGGGTTA
G
Found at i:12399477 original size:26 final size:26
Alignment explanation
Indices: 12399426--12399478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12399416 GTTGACTTAG
* *
12399426 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
*
12399452 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
12399478 G
1 G
12399479 ATCCGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAACCTAA
Found at i:12401894 original size:26 final size:26
Alignment explanation
Indices: 12401858--12401923 Score: 123
Period size: 26 Copynumber: 2.5 Consensus size: 26
12401848 TCATGGGTTG
*
12401858 ATTCCCAGTCTAAGCATCAGGAGTTC
1 ATTCCCAGTCTAAGCATAAGGAGTTC
12401884 ATTCCCAGTCTAAGCATAAGGAGTTC
1 ATTCCCAGTCTAAGCATAAGGAGTTC
12401910 ATTCCCAGTCTAAG
1 ATTCCCAGTCTAAG
12401924 ATCGTAACAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (26 bp):
ATTCCCAGTCTAAGCATAAGGAGTTC
Found at i:12403385 original size:418 final size:419
Alignment explanation
Indices: 12402591--12403418 Score: 966
Period size: 418 Copynumber: 2.0 Consensus size: 419
12402581 CGTCCGCCCG
* * **
12402591 TTCGTTTCATCGGTTCACTTAGGCATACGGGGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
1 TTCGTTTCATCGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAG
* * * * *
12402656 GGTTGTGCCAGCAGGATCGGCAGCCCCTAGAGGGGGACCCGACTGAGCCCCGACTTACGCATACC
66 GGTTGCGCCAGCAAGATCGACAGCACCTAGAGGGGGACCCGACCGAGCCCCGACTTACGCATACC
* * * ** * *
12402721 ACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTAAGGTATACGGAGTTCA
131 ACCCCTCTGGCCGACTGAGCGCCCGCAAGATCATTTCATGGGTTGACTAAGGCATACAGAGTTCA
* * * *
12402786 TTCCCAGTCTAACATCGGACTGGATCGAGGGTTACGACAGCACATGCTGGGCACGAGAATGTGCT
196 TTCCCAATCTAACATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCACGAGAATGTGCT
* ** * **
12402851 GGAGCTACAATTTTCTACGTCGGGGAACCATCATCGAAGCATCGTCGAAGAACCTGATCGACGGC
261 GGAGCCACAATTTTCTACACCGGGGAACCATCACCGAAGCATCACCGAAGAACCTGATCGACGGC
* * * *
12402916 ATTCAGGTTTCGACGATCGGGGGGGCCAGGGGGTTTGCTCACATAATGTGCGATGGGTGCTGGTA
326 ATTCAGGTTTCGACGATCGGGGGGGCCAGGGGGTGTACGCACATAATGTGCGATGGGTGCTAGTA
12402981 CTTGGCCCTTATATTGGCCCACCCGCTCA
391 CTTGGCCCTTATATTGGCCCACCCGCTCA
* **
12403010 TTCG-TTCATCGG-TCGACTTAGGCATACGGAGTTCATTCCCAATCTTAGATCAGACCGGATTGA
1 TTCGTTTCATCGGTTC-ACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGA
*** * * * * * ** *
12403073 GGGTTGCGGTGGCAAGATCGATAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCC
65 GGGTTGCGCCAGCAAGATCGACAGCACCTAGAGGGGGACCCGACCGAGCCCCGACTTACGCATAC
* * * *
12403138 CGCCCCTCTGGCCGGCTGAGCGCCCGTAAGATCATTTCATGGGTTGACTTAGGCATACAGAGTTC
130 CACCCCTCTGGCCGACTGAGCGCCCGCAAGATCATTTCATGGGTTGACTAAGGCATACAGAGTTC
* ** * * *
12403203 ATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGC
195 ATTCCCAATCTAACATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCACGAGAATGTGC
* * * * * ** * * *
12403268 T-GTGCCATATTTTTCTTCACCGGGGCACTGTCGCCGGAGCATCACC-AGAGAACCTGA-CAGGC
260 TGGAGCCACAATTTTCTACACCGGGGAACCATCACCGAAGCATCACCGA-AGAACCTGATC-GAC
* * *
12403330 GGTATT-ACGGTTTCGACGATCGGGGGGGCCGGTGGGGTGTACGCACATGATGTGCGATGGGTGC
323 GGCATTCA-GGTTTCGACGATCGGGGGGGCCAG-GGGGTGTACGCACATAATGTGCGATGGGTGC
12403394 TAGTACTTGGCCCTTATATTGGCCC
386 TAGTACTTGGCCCTTATATTGGCCC
12403419 CCTATCCCTC
Statistics
Matches: 337, Mismatches: 67, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
416 3 0.01
417 71 0.21
418 259 0.77
419 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (419 bp):
TTCGTTTCATCGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAG
GGTTGCGCCAGCAAGATCGACAGCACCTAGAGGGGGACCCGACCGAGCCCCGACTTACGCATACC
ACCCCTCTGGCCGACTGAGCGCCCGCAAGATCATTTCATGGGTTGACTAAGGCATACAGAGTTCA
TTCCCAATCTAACATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCACGAGAATGTGCT
GGAGCCACAATTTTCTACACCGGGGAACCATCACCGAAGCATCACCGAAGAACCTGATCGACGGC
ATTCAGGTTTCGACGATCGGGGGGGCCAGGGGGTGTACGCACATAATGTGCGATGGGTGCTAGTA
CTTGGCCCTTATATTGGCCCACCCGCTCA
Found at i:12404111 original size:26 final size:26
Alignment explanation
Indices: 12404059--12404111 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12404049 GTTGACTTAG
* * *
12404059 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12404085 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12404111 G
1 G
12404112 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12404997 original size:26 final size:26
Alignment explanation
Indices: 12404958--12405010 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12404948 GTTGACTTAG
* *
12404958 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
12404984 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12405010 G
1 G
12405011 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:12405372 original size:899 final size:894
Alignment explanation
Indices: 12403190--12405639 Score: 3676
Period size: 896 Copynumber: 2.7 Consensus size: 894
12403180 GTTGACTTAG
* * **
12403190 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACAGAATTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAATAGCACATGCTGGG
* ** ** *
12403255 CTCGGGCATGTGCT-GTGCCATATTTTTCTTCACCGGGGCACTGTCGCCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
* * * *
12403319 ACCTGACAGGCGGTA-TTACGGTTTCGACGATCGGGGGGGCCGGTGGGGTGTACGCACATGATGT
131 ACCTGACAGGTGGCATTTA-GGTTTCGACGATC-GGGGGGCCGGAGGGGTGTGCGCACATGATGT
* *
12403383 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-CCAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
12403447 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12403512 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT-TTTTT
*
12403577 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCC-AAAA
* *
12403642 AATTTTAAAAAATCTCAAACCGCAAAAAG-TTTGAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTG-AAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12403706 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12403771 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
581 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12403836 CACATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTT
646 CGCATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTT
* * ** * *
12403901 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGCGGCAGCAGGATCGA
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACAGCAGCAGGATCGA
12403966 CAGCACACAAAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCCCCTCTGGCCGACTAAGCGCC
776 CAGCACACAAAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCCCCTCTGGCCGACTAAGCGCC
* *
12404031 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
841 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12404085 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGATGCAATAGCACATGCTGGG
1 GCATACAGAATTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAATAGCACATGCTGGG
* * * *
12404150 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
* ** * * * * *
12404215 ACCTGACAGATGGCATTGGGGTTCCGGCAATCAGGGGGCCGGGAGGGGTATGCGCACATGATGTG
131 ACCTGACAGGTGGCATTTAGGTTTCGACGATCGGGGGGCC-GGAGGGGTGTGCGCACATGATGTG
* * *
12404280 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAGCCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
12404344 ACCCCGTTGAAA-AGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTCAAA
260 ACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12404408 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTT
* * ** *
12404473 GGGCATGCCGATGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCTTTCCAAAAG
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAA-
* * * *
12404538 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12404603 TGCCATGAAACTTCATGTGAAGTCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12404668 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12404733 GCGTCTCGTCTCTCTGGCCCGTGTAGTGCCCGCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
* * *
12404798 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCGAACCGAGGGTTACAGCAGCAGGATTGG
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GAACCGAGGGTTACAGCAGCAGGATCGA
* * ** * * * * *
12404862 CAGCACGCAAACGGGGGCCCGGTCGGTCCTCGGTTTGTGCATCCCGCCCCTCTGGCCGACTGAGC
776 CAGCACACAAA-GGGGGACCGACCGATCCCCGGCTTGCGCAT-CC-CCCCTCTGGCCGACTAAGC
* *
12404927 GCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
12404984 GCATATGGAATTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTACAACAGCACATGCTGGG
1 GCATACAGAATTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAATAGCACATGCTGGG
*
12405049 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
* *
12405114 ACCTGACCGGTGGCATTTAGGTTTCGACGATCGGGGGAGCC-GAGGGGTGTGCACACATGATGTG
131 ACCTGACAGGTGGCATTTAGGTTTCGACGATCGGGGG-GCCGGAGGGGTGTGCGCACATGATGTG
* *
12405178 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
12405243 ACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12405308 GGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTG
*
12405373 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTTT-CAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCAAAAA
* **
12405437 ATTTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 A-TTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
12405502 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
12405567 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGC
582 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
12405632 GCATCCCG
647 GCATCCCG
12405640 CCCGCCCGTC
Statistics
Matches: 1389, Mismatches: 148, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
895 89 0.06
896 602 0.43
897 34 0.02
898 67 0.05
899 590 0.42
900 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACAGAATTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAATAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
ACCTGACAGGTGGCATTTAGGTTTCGACGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACAGCAGCAGGATCGACAGCA
CACAAAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCCCCTCTGGCCGACTAAGCGCCCGCAC
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12408477 original size:723 final size:716
Alignment explanation
Indices: 12406682--12408769 Score: 3162
Period size: 723 Copynumber: 2.9 Consensus size: 716
12406672 ACCATCGCCA
* ** * * * * * *
12406682 GAGAACATGACCGACGGCATTGGGGTTTCGACGATCAG-GGGGTC-GGGGGGTGTGCGCAAATGA
1 GAGAACCTGACCGACGGCATCAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTCCGCACATGA
*
12406745 TGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
12406810 TCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTA-AAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTG
12406875 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTT
195 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
12406939 TTTGTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAA
260 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
12407004 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCA
325 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCA
*
12407069 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAATT
390 TCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GACCATTGTATGAATTTACAAGCCATAAAAAT
*
12407134 GGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
454 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
12407199 TGCGCATCCCGTCTCTCTGGCCGGCATAATGCCCGCCCGCCCGCCCGCACGCTTGTTTCGTCGGT
519 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
12407264 TGGCTTAGGCAGACGGAGTTCATTCCCATTCTAAGATCAGATCGGACTGAGGGTTGC-GACAGCA
584 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCAG-CAGCA
* *
12407328 CATGCTGACTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
648 CATGCTGACTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAACCTCGGAGCATC
*
12407393 CCCG
713 CACG
* * *
12407397 GAGAACCTGACCGATGGCATTAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGA
1 GAGAACCTGACCGACGGCATCAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTCCGCACATGA
* * ** *
12407462 TATGCGATGGGTGCTGATACTTGGCCCTTATATTGGGTCCCTGTCCCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
12407527 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTA-AAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTG
* * * *
12407592 AAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTAGAGTTTTTAGTTGATTTTT
195 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
12407657 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACAAATTTTGGGGCCAAAACGT-CTTCCG
260 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCG
* * *
12407721 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
324 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
*
12407786 ATCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTAGAAGCCATAAAAA
389 ATCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
12407851 TCGAATTGGCACACAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
453 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
12407916 TTGCGCATCCCGTCTATCTGGCCGACGTAGTGCCCGTCCGCCCACCCGCCCGCTCATTTCGTTGG
518 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
12407981 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCA
583 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCA
* * * * *
12408046 CATGCTGGGCTCGGGCATTTGCTGGTGCTGCATTTTTCTTTGTCGGGGTACCAACCTCGGAGCAT
648 CATGCT-GACTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAACCTCGGAGCAT
*
12408111 CGACG
712 CCACG
* * * *
12408116 GAGAACCTGACCGGCGGCATCGGGGTTCTGGCGATCGGGGGGGCCAGGGGGGGTGGTTTCCGCAC
1 GAGAACCTGACCGACGGCATCAGGGTTCCGGCGATCGGAGGGGCC-GGGGGGGT-G--TCCGCAC
* * *
12408181 ATGATGTGCAATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCA
62 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
12408246 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGTTTTGCTGCCAGTAGCCATTAAAGTG
127 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAG-TTTGCTGCCAGTAGCCTTTAAAGTG
*
12408311 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
191 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
12408376 TTTTTTTATGCATGCCAACACAAATACAAGGATCACGTCTACCAAGTTTGGGGCCCAAACTCCTT
256 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
12408441 CCGAAAAAATTTTAAAAAATGTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGA
321 CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* *
12408506 GTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACTATTGTATGAATTTACAAGCCATAA
386 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAA
12408571 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
450 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
12408636 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGGT-AGCCTGCCTGCCGGCTCGTTTTG
515 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-GTCCGCCCGCCCGCCCGCTCGTTTCG
* * * * *
12408700 TCGGTTGGCCTAGGCATACGAAGTTTATTCCCAATCTAAGATCGGATCGGACCGACGGTTGCAAC
579 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCAGC
12408765 AGCAC
644 AGCAC
12408770 GCAGAGAAGG
Statistics
Matches: 1241, Mismatches: 118, Indels: 20
0.90 0.09 0.01
Matches are distributed among these distances:
715 32 0.03
716 5 0.00
717 195 0.16
718 364 0.29
719 96 0.08
720 8 0.01
721 1 0.00
722 3 0.00
723 535 0.43
724 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
GAGAACCTGACCGACGGCATCAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTCCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCAT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACAT
GCTGACTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAACCTCGGAGCATCCAC
G
Found at i:12408891 original size:26 final size:25
Alignment explanation
Indices: 12408862--12408934 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 25
12408852 GTGGGTTGGC
12408862 TTAGGCATACGCAGTTCATTCCCAGT
1 TTAGGCATACG-AGTTCATTCCCAGT
12408888 TTAGGCATACGGAGTTCATTCCCAGT
1 TTAGGCATAC-GAGTTCATTCCCAGT
12408914 TTAGGCATACAGAGTTCATTC
1 TTAGGCATAC-GAGTTCATTC
12408935 TAGTCTAAGA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 44 0.98
27 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (25 bp):
TTAGGCATACGAGTTCATTCCCAGT
Found at i:12410541 original size:26 final size:26
Alignment explanation
Indices: 12410505--12410557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12410495 GTTGACTTAG
*
12410505 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
12410531 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
12410557 G
1 G
12410558 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:12411890 original size:706 final size:704
Alignment explanation
Indices: 12410531--12411998 Score: 2257
Period size: 706 Copynumber: 2.1 Consensus size: 704
12410521 CCCAGTCTAA
* * *
12410531 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCATATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
12410596 CTTCGACATGTGCTGGTGCCGCATTTTTCTTCGTAGGGGCACCATCACCGGAGAACATGACCAGC
66 CTTCGACATGTGCTGGTGCCGCATTTTTCTTCGT--GGGCACCATCACCGGAGAACATGACCAGC
*
12410661 GACATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGCCCACATGATGTGCGATGGGTGCT
129 GACATTAGGGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGCCCACATGATGTGCGATGGGTGCT
* *
12410726 GGTACTTGGCCCTTATATTGGCCCCTATCCCTTATCAAAACTCAAGAACTCACACCCCCTTAAAG
194 GGTACATGGCCCTTATATTGGCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAG
12410791 AGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
259 AGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
12410856 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAA
* * **
12410921 AAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
389 AAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACAACTTCCGAAAAAATTTTAAAAAAT
* *
12410986 GTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTT
454 CTCGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTT
* *
12411051 CACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
519 CACGTGAAGGCTGAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGAGA
*
12411116 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
584 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** * *
12411181 CTGGCCGGCGTAATGCCCGTCCGCCTGCCCGCCTGTTCATTTCATCGATTGGCTTAG
649 CTGGCC-AAGTAATGCCCGCCCGCCTGCCCGCCCGTTCATTTCATCGATTGGCTTAG
* * * *
12411238 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGC-AGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGA-CAGCACATGCTAG
* * * * * *
12411302 GC-TCGGGCATGTGCTTGTGCCGCATTTTTCTTCGCT-GG-AGCGTCGCCGGAGAACCTGACC-G
65 GCTTC-GACATGTGCTGGTGCCGCATTTTTCTTCG-TGGGCACCATCACCGGAGAACATGACCAG
* * * ** * *
12411363 ACGGCATTAGGGTTCCGTCGATCGGGGGGGCCG-GAGGGGGTGTGCGCACATTCTGTGTGGTGGG
128 -CGACATTAGGGTTCCGACGATC-GGGGGGCCGAG-GGGGGTGTGCCCACATGATGTGCGATGGG
* *
12411427 TGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCT
190 TGCTGGTACATGGCCCTTATATTGG-CCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCT
* *
12411492 TAAAGAGCATTTGAGATTTTATAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
254 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACA
* *
12411557 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
319 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGC
* *
12411622 CAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACAACTTCTGAAAAAATTTTA
384 C-AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACAACTTCCGAAAAAATTTTA
* * *
12411687 AAAAATCTCGAACTGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTC-TGCCATG
448 AAAAATCTCGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
*
12411751 AAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
513 AAACTTCACGTGAAGGCTGAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
12411816 CGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
578 CAGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
12411881 GTCTCTCTGGCCAAGTAGTGCCCGCCCGCCTGCTCGCCCGTTCATTTCGTCGGTTGGCTTAG
643 GTCTCTCTGGCCAAGTAATGCCCGCCCGCCTGCCCGCCCGTTCATTTCATCGATTGGCTTAG
* * * * *
12411943 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGTGTTACGATAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCA
12411999 AGATCGCAAA
Statistics
Matches: 689, Mismatches: 63, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
703 1 0.00
704 38 0.06
705 146 0.21
706 311 0.45
707 192 0.28
708 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (704 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
CTTCGACATGTGCTGGTGCCGCATTTTTCTTCGTGGGCACCATCACCGGAGAACATGACCAGCGA
CATTAGGGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGG
TACATGGCCCTTATATTGGCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAA
AATACAAGGATCACATCTACCAAGTTTGGGACCAAAACAACTTCCGAAAAAATTTTAAAAAATCT
CGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTGAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCAAGTAATGCCCGCCCGCCTGCCCGCCCGTTCATTTCATCGATTGGCTTAG
Found at i:12412142 original size:26 final size:26
Alignment explanation
Indices: 12412102--12412154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12412092 GTTGACTTAG
12412102 GCATACAAAGATCATTCCCAGTCTAA
1 GCATACAAAGATCATTCCCAGTCTAA
* *
12412128 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGATCATTCCCAGTCTAA
12412154 G
1 G
12412155 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGATCATTCCCAGTCTAA
Found at i:12413891 original size:719 final size:702
Alignment explanation
Indices: 12412128--12414150 Score: 2836
Period size: 708 Copynumber: 2.8 Consensus size: 702
12412118 CCCAGTCTAA
* *
12412128 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * * * *
12412193 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAACATCGGAGCAT-GTCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGCACCATCACCAGATCATCGT-CGGAG
* * *
12412257 AACCTGATCGGCGGCATTAGGGTTCC-GATGATCTGGGGGGCCGAGGGGGGTGTGCGCACATGCT
129 AACCTGACCGGCGGCATTGGGGTTCCGGA-GA--TGGGGGGCCG-GGGGGGTGTGCGCACATGAT
*
12412321 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTACAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCT-CAGAACT
*
12412386 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * ** *
12412451 AATGGGGACACCTTTTTCAAATGGTCAGAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTAGCTGAATTTTT
* * * *
12412516 TTGTGCATGCCAACATAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCC-TGCCAA
383 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCGA
* * *
12412580 AAAAATTTTAAAGAATCCCAAACCACAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCA
448 AAAAATTTTAAAAAATCCCAAACC-CAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCG
*
12412645 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
** * * *
12412710 GGCATTGGCACACAGAAATATGAACGTGTGCCTAAACCCACATACCACCCTATCGATCCACGGCT
577 GGCATTGGCATGCAAAAATATGAAAGTGTGCCTAAACCCACATACCACCCTATCGATCAACGGCT
* * * * *
12412775 TGCGCATCCTGTCTCTCTGACCGGCGTAGTGCCTGCCCGTTCGTTTCGTCGATTAGCTTAG
642 TGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCTCATTTCGTCGATTAGCTTAG
* ** *
12412836 GCATACAGAGTTCATTCCCAGTCTACGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12412901 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCCGGGCACCATC-CCCGGTGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCA-CCGGGCACCATCACCAGAT-CATCGTCGGAG
* * *
12412965 AACCTGTCCGACGGCATTGGGGTTCCGGAGATCGGGGGGGCCAGGGGGGGTGTGCCCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGGAGAT--GGGGGGCC-GGGGGGGTGTGCGCACATGATG
12413030 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCCAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCT-CAGAACTC
*
12413095 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12413160 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTGAGCTAAATATTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT-AGCTGAATTTTTT
***
12413225 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCATCAAAACTCCTTCCCGAA
384 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCGAA
** * ** * *
12413290 AAAATTTTAAAAAATATCAAACCGCAAAAAAATTTGGAAAATCGTGAAAAATAGAAAACGAGTTG
449 AAAATTTTAAAAAATCCCAAACC-C-AAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCG
* * *
12413355 TCTTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
* *
12413420 GGCATTGGCGTGCAAAAATAT-AAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGC
577 GGCATTGGCATGCAAAAATATGAAAG-TGTGCCTAAACCCACATACCACCCTATCGATCAACGGC
** *
12413484 TTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCTCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
641 TTGCGCATCCCGTCTCTCTGACCGACGTA--G-T---------GCCCGCCCGCTCATTTCGTCGA
*
12413549 TTGGCTTAG
694 TTAGCTTAG
* * *
12413558 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
12413623 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCTGGGCACCATCACCAGATCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC-GGGCACCATCACCAGATCATCGTCGGAGA
* * * *
12413688 ACCTGACCGGTGGCATTGGGGTTCCGGCGATAGGGGGCCGGGGGGGTGTGCGCACATGATGTGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGAGATGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * *
12413753 ATTGGTGCTAGTACTTGGCCCTTACACTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTC-AGAACTCACAC
*
12413818 CCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12413883 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGTTTCTAGCTGAATTTTTTTAT
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTT-TAGCTGAATTTTTTTGT
* * * * *
12413947 GCATGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCTG-AAAT
387 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCGAAAAA
* * *
12414011 ATTTTAAAAAATCCCAAACCCCAAAAAGTTTCCAGAATCCTAAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCAAA-CCCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTT
*
12414076 GCCATGAAACTTCACGTGAAGGCCTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
12414141 TTGGCATGCA
581 TTGGCATGCA
12414151 CCTACCACCC
Statistics
Matches: 1168, Mismatches: 118, Indels: 49
0.87 0.09 0.04
Matches are distributed among these distances:
706 1 0.00
707 7 0.01
708 387 0.33
709 33 0.03
710 173 0.15
712 1 0.00
713 1 0.00
717 106 0.09
718 24 0.02
719 256 0.22
720 8 0.01
721 2 0.00
722 165 0.14
723 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (702 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCACCATCACCAGATCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGAGATGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCGAAAAAATTT
TAAAAAATCCCAAACCCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAAAAATATGAAAGTGTGCCTAAACCCACATACCACCCTATCGATCAACGGCTTGCGCATCC
CGTCTCTCTGACCGACGTAGTGCCCGCCCGCTCATTTCGTCGATTAGCTTAG
Found at i:12415826 original size:726 final size:724
Alignment explanation
Indices: 12414425--12415836 Score: 2105
Period size: 726 Copynumber: 1.9 Consensus size: 724
12414415 CCCAGTCTAA
* ** *
12414425 GCATACGCAGTTCATTCCCAGTCAAAGATTGGACTGGACCAAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGCAGTTCATTCCCAGTCAAACATTGGACCAGACCAAGGGTTGTGGCAGCACATGCTGGG
* * * * * *
12414490 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGCCACCATCACCTAAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGCCACCATCACCGAAGCATCGTAGGAGA
* * ** * *
12414555 ACCTGGCCGGCGGCATTGGGGTTCCAGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGAAGGGCCGGGGGCTGTGCGCAAATGATGTGCG
*
12414620 ATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* *
12414685 CCTCTATAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
261 CCCCTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
* *
12414750 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTCAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATGTTTTTGTGC
* *
12414815 ATGCCAACAAAAATACAAGGATCACCTCTTCCAAGTTTGGGGCCAAAAATCCTTTCCAAAAAATT
391 ATGCCAACAAAAATACAAGGATCACCTCTACCAAGCTTGGGGCCAAAAATCCTTTCCAAAAAATT
* * * **
12414880 TTAAAAAATCTCAAACCATAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCCAAACCACAAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
12414945 ATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTT
521 ATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTG
** * * *
12415010 GCATGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCAT
586 GCACACAGAAATAGGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
12415075 CCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCGTCCGTCCGCCCGCCCGCTCATTTCGTCGG
651 CCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGTCCGTCCGCCCGCCCGCTCATTTCGTCGG
12415140 TTGGCTTAG
716 TTGGCTTAG
* *
12415149 GCATACGGAGTTCATTCCCAGTCTAACATTGGACCAGACCAAGGGTT-TCGGCAGCACATGCTGG
1 GCATACGCAGTTCATTCCCAGTCAAACATTGGACCAGACCAAGGGTTGT-GGCAGCACATGCTGG
* * * ** *
12415213 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGAGCCAGCATTGCCGGAGCATCGTAGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGCCACCATCACCGAAGCATCGTAGGAG
*** *
12415278 AACCTGACCGGCGTTGTTGGGGTTCC-GACGATCGAAGGGCCGAGGGGCTGTGCGCAAATGGTGT
130 AACCTGACCGGCGGCATTGGGGTTCCAG-CGATCGAAGGGCCG-GGGGCTGTGCGCAAATGATGT
**
12415342 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
**
12415407 CACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
258 CACCCCC-TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
* *
12415472 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATGTTTTT
* * * *
12415537 GTGCATGGCACCAAAAATACAAGGATGACGTCTACCAAGCTTGGGG-CAAAAACTCC-TTCCAAA
387 GTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGCTTGGGGCCAAAAA-TCCTTTCC-AA
* * *
12415600 AAAATTTTAAAAAATCCCGAA-CAGCAAAAAGTTTTCAACATCATGAAAAATAGAAAATGAGTCG
450 AAAATTTTAAAAAATCCCAAACCA-CAAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCG
* *
12415664 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAAT
* * *
12415729 GGCATTGGCACACAGAAATAGGAAGATATGCCTAAACCCACCTTCCACCCTATTGATCCACGGCT
579 GGCATTGGCACACAGAAATAGGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGCT
** * *
12415794 TGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCCTGCCCG
644 TGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCG
12415837 CCCGCTCTTT
Statistics
Matches: 612, Mismatches: 69, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
723 2 0.00
724 142 0.23
725 98 0.16
726 370 0.60
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (724 bp):
GCATACGCAGTTCATTCCCAGTCAAACATTGGACCAGACCAAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGCCACCATCACCGAAGCATCGTAGGAGA
ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGAAGGGCCGGGGGCTGTGCGCAAATGATGTGCG
ATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATGTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACCTCTACCAAGCTTGGGGCCAAAAATCCTTTCCAAAAAATT
TTAAAAAATCCCAAACCACAAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTG
GCACACAGAAATAGGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGTCCGTCCGCCCGCCCGCTCATTTCGTCGG
TTGGCTTAG
Found at i:12416073 original size:26 final size:26
Alignment explanation
Indices: 12416021--12416073 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12416011 GTTGACTTAG
* *
12416021 GCATACGGAGTTCTTTCCCTATGTAA
1 GCATACGGAGTTCATTCCCTATCTAA
12416047 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
12416073 G
1 G
12416074 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:12416735 original size:181 final size:183
Alignment explanation
Indices: 12416418--12416778 Score: 557
Period size: 180 Copynumber: 2.0 Consensus size: 183
12416408 TTTTTAGCTG
* *
12416418 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACCCC
1 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCC
* **
12416483 ATCTGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
66 ATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
*
12416548 GAGTCGTCTTGCCATGAAACTTC-ACGTGAAGG-CTTAAGGGACAATTGTGTC
131 GAGTCGTCTTGCCATGAAACTTCAAAGTGAAGGCCTTAAGGGACAATTGTGTC
* * *
12416599 AATTTTTTTGTGCATGCCAAAAAAAATACAA-GATCACGTCTACGAGGTTTGGGGCCAAAAATCC
1 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCC
* * * *
12416663 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAATGTTTTGAAAATCGTGAAAAAATAGAAAA
66 ATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATG-AAAAATAGAAAA
* *
12416728 TGAGTCGTCTTGCCATGAAACTTCAAAGTGAAGGCCTTAAGGGACCATTGT
130 CGAGTCGTCTTGCCATGAAACTTCAAAGTGAAGGCCTTAAGGGACAATTGT
12416779 ATGAATTTAA
Statistics
Matches: 162, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
180 73 0.45
181 66 0.41
182 8 0.05
183 15 0.09
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (183 bp):
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCC
ATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCAAAGTGAAGGCCTTAAGGGACAATTGTGTC
Found at i:12418578 original size:26 final size:26
Alignment explanation
Indices: 12418547--12418599 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12418537 GTTGACTTAG
*
12418547 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12418573 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12418599 G
1 G
12418600 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12420372 original size:26 final size:26
Alignment explanation
Indices: 12420335--12420387 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12420325 GTTGACTTAG
*
12420335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12420361 GCATACGAAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12420387 G
1 G
12420388 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12420550 original size:898 final size:896
Alignment explanation
Indices: 12417682--12426578 Score: 10969
Period size: 890 Copynumber: 10.0 Consensus size: 896
12417672 GTTGGCTTAG
*
12417682 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
12417747 GTCGGGCATGTGTTAGTGCCACAATTTTCTTCATCGGGGCACCATCATC-ATAGCATCGTCGGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATCATCGGAG
* * * * *
12417811 AACCTGACCGGCGACATTGGGGTTCCAACGATTGGGGGGCCGGGGGCGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGG-GGTGTGTGCACATGATGT
* **
12417876 GCGATTGGTGCTGGTACAAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12417941 CACCCACTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12418006 TGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
* * * *
12418071 GTGCATACCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGACCAAAACTCCTTCCCAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* * * * * ** *
12418136 AAATTAAAAAAATCCCGAACTGCAAAAAGTATT-GAAAATTGTGAAAAATAGAAAACGAGTTGT-
452 AATTTTAAAAAATCTCGAACCGCAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
12418199 TTAGCCATGAAACTTGACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATG
516 TT-GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
12418264 GCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * *
12418329 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----G--C-CCACCCGCTCCTTTCGTCGGTTGGCTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGATTGGCTT
* * ** *
12418387 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGA-TCAAACCGAGGGTTGCGGTAGCAGGAAT-
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCAGG-ATC
** * * * *
12418450 GGTAGCACGTAGA-GGGGAACCAACCGAT-CCATGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
773 GACAGCACGTAGAGGGGGACCCGATCGATCCCA-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
12418513 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAA
837 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12418573 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGGTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
12418638 CTTGGGCAAGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCATAGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCATCGGAGA
* * * *
12418703 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGAGGCCGGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGTGCACATGATGTGC
* *
12418768 GATGGGTGCTGGTACTTGGCCCTTATATTGTCCACCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12418833 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12418898 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCATTTTTTAGCTGAATTGTTTTTT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
* * * *
12418963 ACATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCTAAAATTCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAA
* * ** *
12419028 TTTTAAAACATCTCGAACCGCAACAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
12419093 CCATGAAACTTCACGTCAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATATAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
12419158 TGGCACACAGAAATATGAAGATGTGCCT-AACCCTACCTACCACCCTACCGATCCACGACTTGCG
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCTATCGATCCACGACTTGCG
* * *
12419222 CATCCCGTCTCTCTGGCCGACATAGT----GCCCG---CCCGCTTGTTTCGTCGATTGGCTTTGG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGATTGGCTTAGG
* ** * *
12419280 CATACGCAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTATGGTAGCAAGATCGACA
713 CATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCAGGATCGACA
** * * * * * *
12419344 GCACACAGAGGGGGACCAG-CCGAT-CCACGGCTTACGCATCCCGCCCCTCTGGCCAGCTTAGCA
777 GCACGTAGAGGGGGACCCGATCGATCCCA-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
12419407 CCCACAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
841 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
12419463 GCACACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
12419528 -TGTGGGCATGTGATGGAGTCACACTTTTCTTCGTCGGGGCACCATC-CCTGAAGCTTCATCGGA
66 CT-CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAAGCATCATCGGA
* * * * * *
12419591 GAACTTGATCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGTCCGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGTGCACATGATG
* * *
12419656 TACAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12419721 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
12419786 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* * * * **
12419851 TCTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGATCCAAAACTCCTTCGAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAA
* ** *
12419916 AA-TTTAAAAAATTCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATC
452 AATTTTAAAAAA-TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* ***
12419980 TTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATATATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
12420045 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * *
12420110 CGCATCCCATCTCTTTGGCCGACATAGTGCCCGCCCGCCCACCCGCTTGTTTCGTCGATTGGCTT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCGCTCGTTTCGTCGATTGGCTT
** * *
12420175 AGGCATACGGAGTTCATTCCTTGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAAGATCGA
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
12420240 CAGCACGCAGAGGGGGACCTGATCGATCCCATGCTTGCGCATCCC-CCCGTCTGGCTGGCTGAGC
775 CAGCACGTAGAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
12420304 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12420361 GCATACGAAGTTGATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTTCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
12420426 CTTGGGCACGTGCTAGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCATCGGAGA
* * * *
12420491 ACCTGACCGGCAGTATTGGGGTTCCGACGATCAGGGGGACCGGGGAGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG-GGTGTGTGCACATGATGTG
* *
12420556 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12420621 ACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTTTGGAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12420686 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TGTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTT
* * * *
12420750 GTGCATGCCAACAAAAATAAAAGGATCATGTCTGCCATGTTTGGGGCCAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAA
* * * * * * *
12420815 AATTTTAAAAAATTTGGAACCACGAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCGTCC
452 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
12420880 TGCCATGAAACTTGACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12420945 ATTGGCATATAGAAATATGAAGATGTGGCTAAACCCACCTACCA-CCTATCGATCCACGAC-TGA
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG-
* * * * * * *
12421008 CACATCCCGTCTCTCTGGCCGGCGTCGT----GCCCG---CCTGCTCATTTTGTCGGTTGGCTTA
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGATTGGCTTA
** * * * * ** *
12421066 GGCATACATAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGCGTTACGATAGTAGGATC-AG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGA-
* * *
12421130 CAGCACGTAAAGGGGGACCCGATCGATCCTC-GACATGCGCATCCCGCCCCTCTGGCCGGCTGAG
775 CAGCACGTAGAGGGGGACCCGATCGATCC-CAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** * * * *
12421194 CACCCATACGCTCGTTTCATGCGTTGACTTAGGCATACAGAGTTCATTCTCGGTCTAA
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12421252 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
12421317 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCG-CCAGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATCATCGGAG
* ** * *
12421381 AACCTGACCGGCGATATTGGGGTTCCGACGATCGGGGGTGTCGGGGGGTGTGTGCACATGTTGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGTGCACATGATGTG
* * * * *
12421446 CGATGGGTGCTGGTAATTGGCCATTATATTGGCCCCTTATCCCTCATCAAACCTCCAGAACACAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12421511 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAC
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12421576 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAT-TTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TGTTTT
* * * *
12421640 GTGCATGCCAACAAAAATAAAAGGATCATGTCTGCCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
** * * *
12421705 AATTTTAAAAAAT-TCGAAACCATAAAAATTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCGTC
452 AATTTTAAAAAATCTCG-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * *
12421769 CTGCCATGAAACTTGAAGTGATGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12421834 CATTGGCACACAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGACTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
12421899 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG------G-TCGTTTCGTTGGTTGGCTTA
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGATTGGCTTA
* * ** * * * * *
12421957 GGCATATGTAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGCGTTACGGTAGTAGGATC-AG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGA-
* *
12422021 CAGCACGTAAAGGGGGACCCGATCGATCCTC-GGCCTGCGCATCCCGCCCCTCTGGCCGGCTGAG
775 CAGCACGTAGAGGGGGACCCGATCGATCC-CAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
12422085 CGCCCGCCCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCGAA
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12422143 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12422208 CTCGGGCATGTGCTGATGACGCATTTTTCTTCATCGGGGCACCATC-ACCAGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATCATCGGAG
* * * * * * *
12422272 AACTTGACTGGCGGTATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGTGTGTGCACATGTTGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTG
* * * *
12422337 CGATGGGTGCTGGTAATTGGCCGTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12422402 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12422467 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAA-TGTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTT
* * * *
12422530 GGGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAG
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAA-
* * *
12422595 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGATAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
**
12422660 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAA
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
12422725 ATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
*
12422790 GCATCCCGTCTCTCTAGCC-AGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-AGTTGGCT
647 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCC-CCCGCTCGTTTCGTCGA-TTGGCT
** ** * *
12422853 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCAGGATTG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCG
** * * * * * *
12422918 GTAGCAGGTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCGTCTGGCCGGCTGAG
774 ACAGCACGTAGAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
12422983 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATTCCCTA-TCTAA
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAA
* * * * * * *
12423041 GCAAATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGATGCTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
12423106 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCATCGGAGA
* * * * ** * * **
12423171 ACTTGACTGACGGCAGTGGGGTTTCGGTGATCGGGGGCGCCGGGGGGTATGTGCTCAAAATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGTGCACATGATGTGC
* ** * *
12423236 GAAGGGTGCTGGTACTTGTTCCTCATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12423301 CCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12423366 GGGCCACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
*
12423430 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAA
*
12423495 TTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
454 TTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12423559 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-GTCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
12423623 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* *
12423688 CATCCCGTCTCTCTGGCC-ACCGTAGTGCCCTCCCGCCCGCCCGCTCATTTCGTCGGA-TGGCTT
648 CATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCC-CCCGCTCGTTTCGTC-GATTGGCTT
* * * * ** * * *
12423751 AGGCATTCAGAGTTCATTCCAAGTCTATGATTAGA-TCGGACTGAGGGTTGCAGTAGCAGGATCG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCAGGATCG
12423815 ACAGCACGTAGAGGGGGACCC-A--G---CCA---------AT-------C-C---CCGG--GA-
774 ACAGCACGTAGAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * **
12423851 ----TGCATGCTCGTTTCGTCAGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12423901 -C-TA---AG---A-T--C-G-----GAT----C-GGACCGAGCGTTACGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12423944 CTCTGGCATGTGCTGGTGCCACATTTTTCATCGTCGGGGCACCATCGTCAAAGTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCATCGGAGA
* * *
12424009 ACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGTGCACATGATGTG
** *
12424074 CGATGGGTGCTGGTACTTTACCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12424139 A-CCCCTTAAAGAGCATTTGAGATTTTAGAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12424203 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
* **
12424268 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGATGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAA
* * * *
12424333 ATTTTAGAAAATCTCGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTT
453 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12424398 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCAGAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
12424463 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCCAC-AGCTTGC
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGC
* * * * *
12424527 GCATCCCGTCTCTTTGGCTGGCGTAGTGACCGCCCGCCCGCCCGTCTGCTTATTTCGTCGATTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCG-CT-C--GTTTCGTCGATTGG
* * * ** ** * *
12424592 CTTAGGTATACGGAGTTCATTCGCAGTCTAAGATCCGAGC-AAATTGAGTGTTGTGGCAGCAGGA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAGCAGGA
* * * * * *
12424656 TCGGCAGCATGGAGAGTGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
771 TCGACAGCACGTAGAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** *
12424721 GAGCGCCCGCACATTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12424782 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12424847 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGAGGCACCAT--T----G-----TCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCATCGGAGA
* * *
12424901 ACCTGACCGATGGCATTGGGGATCCGACGATCGGGGGGGCCGGGGGG-GTGAGCTCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGTG--CACATGATGT
* * *
12424965 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12425030 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12425095 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
* * **
12425160 GTGAATCCCAACAAAAATACAAGGATCATTTCTACCAAGTTTGGGGCCAAAACTCCTTCCG----
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* * *
12425221 -A----AAAAAATC-CTGAACCACAAAAAGTATCGAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
12425280 TTGCCATGAAACTTCACCTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
12425345 CATTGGCATTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATACCACCTTATCGAT
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT---A-CC---A-C-CC-TATCGAT
* * *
12425410 CCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAATGCCCGCCCGCCCGCCCGCCCGCCCGCT
636 CCACGACTTGCGCATCCCGTCTCTCTGGCCGACGT-A-----G--TGCCCGCCCGCCC-CCCGCT
* * * **
12425475 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTGGA-TCGGATTGAGG
692 CGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGG
* * * * * *
12425539 GTTGCAGCACCAGGATCGACAGCACGCAGAGGGGGACCTTG-CCGATCCCCGGCTTGCGCATCCC
756 GTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACC-CGATCGATCCCAGGCTTGCGCATCCC
* * * * *
12425603 GCCCCTATGGCCTGCTGAGCGGCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCA
820 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
12425668 TTCCCAGTCTAA
885 TTCCCAGTCTAA
* * * * *
12425680 GCATATGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCGGTAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
12425745 CTCGGGCATGTGCTTGTGCGGCATTTTTCTTCGTCGGGGCACCATCGTTGGTGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCATCGGAGA
* * *
12425810 ACCTGACCGACGGCTTTGGGGTTCC-AGCGTTCGAGGGGCCGGGGGGGGTGTGTGCGCACATGAT
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCC--GGGGGGTGTGT--GCACATGAT
* * * **
12425874 GTGCGATTGCTACTGGTACTTGGCCCTTATATTGGCCCGTTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
12425939 CACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
12426004 AATGGGGATATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCATTTTTTAGCTGAATTGTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
* * *
12426069 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCGTTCCAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAA
* * * *
12426134 AGAATTTTAAAAAATCTCGGACTGTAAAAAGTTTCAAAAATCATGATAAATAGAAAACGAGTCGT
451 A-AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
12426199 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * ** * *
12426264 GCATTGGCACGCATAAATATGAAGATGTCCCTAAACCCACCTGTCACCGTATCGATCCACGGCTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * * *
12426329 GCGCATCCCGTCTCTCTAGCC-AGCGTAGTGCCCGTCAG---CCCGCTCGTTTCATCGGTTGGCT
645 GCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGATTGGCT
* * * *
12426390 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
12426455 ACAGCAGGCAGAGGGGGACCCGATCTATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAG
774 ACAGCACGTAGAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
12426520 CGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12426578 G
1 G
12426579 ATCGGACTGG
Statistics
Matches: 7042, Mismatches: 754, Indels: 413
0.86 0.09 0.05
Matches are distributed among these distances:
838 225 0.03
839 262 0.04
840 101 0.01
841 2 0.00
842 1 0.00
843 5 0.00
844 78 0.01
845 1 0.00
847 1 0.00
848 1 0.00
849 1 0.00
850 2 0.00
851 1 0.00
852 1 0.00
855 2 0.00
858 1 0.00
859 3 0.00
862 1 0.00
863 1 0.00
864 41 0.01
866 1 0.00
867 1 0.00
869 2 0.00
870 3 0.00
871 4 0.00
872 2 0.00
874 1 0.00
877 41 0.01
879 1 0.00
882 3 0.00
883 3 0.00
884 150 0.02
886 2 0.00
888 4 0.00
889 28 0.00
890 1792 0.25
891 1198 0.17
892 128 0.02
893 176 0.02
894 50 0.01
895 6 0.00
896 1 0.00
897 210 0.03
898 1684 0.24
899 224 0.03
900 16 0.00
901 3 0.00
902 24 0.00
903 64 0.01
904 2 0.00
908 8 0.00
909 35 0.00
910 45 0.01
911 245 0.03
912 1 0.00
913 2 0.00
916 2 0.00
920 148 0.02
921 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
GTAGAGGGGGACCCGATCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Done.