Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 63 of 131
Found at i:12421256 original size:26 final size:26
Alignment explanation
Indices: 12421226--12421278 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12421216 GTTGACTTAG
* *
12421226 GCATACAGAGTTCATTCTCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12421252 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12421278 G
1 G
12421279 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12423045 original size:26 final size:26
Alignment explanation
Indices: 12423015--12423067 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12423005 GTTGACTTAG
12423015 GCAAACGGAGTTCATTCCCTA-TCTAA
1 GCAAACGGAGTTCATTCCC-AGTCTAA
*
12423041 GCAAATGGAGTTCATTCCCAGTCTAA
1 GCAAACGGAGTTCATTCCCAGTCTAA
12423067 G
1 G
12423068 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCAAACGGAGTTCATTCCCAGTCTAA
Found at i:12424786 original size:26 final size:26
Alignment explanation
Indices: 12424756--12424808 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12424746 GTTAACTTAG
12424756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12424782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12424808 G
1 G
12424809 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12425457 original size:4 final size:4
Alignment explanation
Indices: 12425448--12425473 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
12425438 CCGACGTAAT
12425448 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
12425474 TCGTTTCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:12425690 original size:26 final size:26
Alignment explanation
Indices: 12425654--12425704 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12425644 CTTGACTTAG
12425654 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12425680 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12425705 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12427378 original size:26 final size:26
Alignment explanation
Indices: 12427342--12427394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12427332 GTTGACTTAG
12427342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12427368 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12427394 G
1 G
12427395 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12428268 original size:26 final size:26
Alignment explanation
Indices: 12428232--12428282 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12428222 TGACATAGGT
12428232 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
**
12428258 ATACGGAGTTCATTCGTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12428283 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:12428615 original size:900 final size:894
Alignment explanation
Indices: 12426657--12429909 Score: 4409
Period size: 886 Copynumber: 3.6 Consensus size: 894
12426647 TCGCTGGGGC
* * ***
12426657 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAA
* * *
12426722 CTCACATCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAATGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
12426787 GGAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTC
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
12426852 TTTT-TGCATG-CATACAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCC
196 TTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
12426915 CAAAAAATTTTAAAAAATCACGAACCGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAAAGAGT
260 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAGT
*
12426980 CGTCTTGCCATGAAAGTTCAC-TAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 CGTCTTGCCATGAAACTTCACGT-GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
12427044 AATGGCATTGGCACGCAG-AATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACG
389 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
12427108 ACTTACGCATCCCGTCTCTCTGGCCGACATAGTGATCGCCCGCCCGCCCACCCGCTCGTTTCGTT
454 GCTTGCGCATCCCGTCTCTCTGGCCGACATA--G-T-GCCCG-CCGCCCGCCCGCTCGTTTCGTC
* * * * *
12427173 GGTCGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GACA
514 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTG-CA
* * * * * * * *
12427237 GTAGGATCAGTAGCA-GGAGAGGGGGACCTGGCCAATCCTCAGCTTGCGCATCCCGCCCCTCTGG
578 GCAGGATCGGCAGCACGTAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
12427301 CCGACTGAGCGCCCGCACGCTTGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
643 CCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* ** *
12427366 AAGCATATGGAGTTCATTTCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGACAGCACATGCTG
708 AAGCATACGGAGTTCA-TTCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
12427431 GGCTCGGGCATGTGCTGGTGCTGCATTTTTGTTCGCCGGGGCACCATCGTCGGAG-AAC-C---T
772 AGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGAT
** * *
12427491 AA-CTG--G-CGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCACACATG
837 AACCTGACGACGGCATTGGGGTTCCGTCGATC-GGGGGGCGGGGGGGTGTGCGCACATG
12427546 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAA
* ** * *
12427611 CTCATACCCCCCCAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
12427676 GAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * * *
12427741 TTTTATGCACGCCAACAAAAATACAAGTATCATGTCTGCCAAGTTTGGGGCCAAAACCCCTTTCG
196 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* **
12427806 AAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTACAAAATCATGAAAAATAGAAAAAGAGTC
261 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAGTC
* *
12427871 GTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAA
326 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
12427936 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
391 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
12428001 TTGCGCATCCCATCTCTCTAGCCGGCACAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCAGTTGG
456 TTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGC-CGCCCGCCCGCTCGTTTCGTCAGTTGG
** * *
12428066 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGCTTGCTGCAGCAAGAT
520 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGAT
* * * *
12428131 CGGCAGCACGTAGAAGGGGACCTGATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGACTG
585 CGGCAGCACGTAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
12428196 AGCGCCCGCACGCTTATTTCGTGGGTTGACATAGGTATACGGAGTTCATTCCCAGTCTAAGCATA
650 AGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
12428261 CGGAGTTCATTCGTAGTCTAAGATCAGACCAGAGCGAGGGTTGCGGGAGCACATGCTGAGCTCGG
715 CGGAGTTCATTC-CAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTCGG
* *
12428326 GCATGTGCTGGTACCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGATAACCTG
779 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGATAACCTG
* * * **
12428391 ATCGACGACAATGGGGTTTCGTCGATTAGGGGGCTGGGGAGGGTGTGCGCACATG
843 A-CGACGGCATTGGGGTTCCGTCGATCGGGGGGC-GGGG-GGGTGTGCGCACATG
* * *
12428446 ATGTGCGACGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAA
12428511 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTTGCCAGTAGCCATTAAAGTGTC
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTC
** * * *
12428575 TTTAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATA
130 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
12428640 TTTTTGTGCATGCCAA-AAAATGTAGAAGGATCACCTCTACCAAGGTTGGGGCCAAAACTCCTTT
195 TTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * * *
12428704 CGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGGTTTGAAAATCGTGAAAAATTGAAAACGAG
259 CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAG
*
12428769 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAA
324 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
12428834 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
389 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
12428899 GCTTGCGCAACCCGTCTTTCTGGCC-AGCGTAGTG--C-CCGCCCGCCCGCTTGTTTCGTCAGTT
454 GCTTGCGCATCCCGTCTCTCTGGCCGA-CATAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCAGTT
* * * * *
12428960 GACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTG-TGGCAGCAG
518 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCT-GCAGCAG
* * * *
12429024 GATCGGCAGCACGTAGAGGGGGGCCCGGTCGATCCCCGGCTTGTGCATCCCGCCCAT-T------
582 GATCGGCAGCACGTAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * **
12429082 -T--GC-CCGGCACGCTCGTTTCGTGGGTTGACTTTGGCATACAAAGTTCATTCCCAGTCTAAGC
647 CTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
12429143 ATACGGAGTTCATTCCCAGTCAAAGATCGGATCAGACCGAGGGTTGCGGTAGGACATGCT-AGGC
712 ATACGGAGTTCATT-CCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGA-GC
* * *
12429207 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCGCCGGATCATCGCCGGAGAA
775 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGATAA
12429272 CCTGACCGACGGCATTGGGGTTCCGGT-GATCGGAGGGGCCGGGGTGGGTGTGCGCACATG
839 CCTGA-CGACGGCATTGGGGTTCC-GTCGATCGG-GGGG-CGGGG-GGGTGTGCGCACATG
* * * *
12429332 ATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAA
* *
12429397 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
12429462 GAAATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTT
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
12429527 TTTTGTGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTATGGGGCCAAAACTCATTCCG
196 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
12429592 AAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
261 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAGTC
*
12429657 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAA
326 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
12429722 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATTCACGGC
391 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * *
12429787 TTGCGCATCTTGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCACTTGCCTGCTTGTTTCGTC-G
456 TTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCC-G-CC-C--GCCCGCTCGTTTCGTCAG
* * *
12429851 ATTTGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGAGTTGC
516 -TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
12429910 GGTAGCACAT
Statistics
Matches: 2088, Mismatches: 233, Indels: 80
0.87 0.10 0.03
Matches are distributed among these distances:
884 1 0.00
885 186 0.09
886 467 0.22
887 99 0.05
888 206 0.10
889 185 0.09
890 185 0.09
891 76 0.04
892 1 0.00
893 1 0.00
894 67 0.03
895 5 0.00
896 126 0.06
897 1 0.00
898 8 0.00
899 24 0.01
900 450 0.22
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCAGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGATC
GGCAGCACGTAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
GCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGATAACCTGACG
ACGGCATTGGGGTTCCGTCGATCGGGGGGCGGGGGGGTGTGCGCACATG
Found at i:12430779 original size:26 final size:26
Alignment explanation
Indices: 12430743--12430795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12430733 GTTGACTTAG
*
12430743 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
12430769 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
12430795 G
1 G
12430796 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:12433760 original size:26 final size:26
Alignment explanation
Indices: 12433730--12433782 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12433720 GTTGACTTAG
12433730 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12433756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12433782 G
1 G
12433783 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12434668 original size:26 final size:26
Alignment explanation
Indices: 12434637--12434686 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12434627 GACTTAGGCG
12434637 TACGGAGTTCATT-CTCAGTCTAAGCA
1 TACGGAGTTCATTCCT-AGTCTAAGCA
12434663 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
12434687 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCA
Found at i:12436431 original size:26 final size:26
Alignment explanation
Indices: 12436401--12436453 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12436391 GTTGACTTAG
*
12436401 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
12436427 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12436453 G
1 G
12436454 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12436485 original size:891 final size:891
Alignment explanation
Indices: 12435227--12437165 Score: 2812
Period size: 891 Copynumber: 2.2 Consensus size: 891
12435217 GTATGAATAT
* *
12435227 GTAGAAAATATGAAGATGTGCCTAAACCCACCAACCACTCTATCGATCCACGGCTTGCGCATCCC
1 GTAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
12435292 GTCTCTCTGGCCAGCTTAGTGCCCGCCCGCCCGACCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
65 GTCTCTCTGGCCGGCGTAGT----GCCCGCCC-A-C-CTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
12435357 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCAGGATTCACAGCACGT
123 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCAGCAGCAAGAATCACAGCACGT
* * * *
12435422 AGAGTGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCAGAGCGTCCGCAC
188 AAAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCAGAGCGTCCGCAC
** * * *
12435487 GCTCGTTTTGTTGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
253 GCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATACAGAGTTCATT
* * * *
12435552 CCTAGTCTAAGATCGGACCGGACAGAGGGCTACGACAGCACATGCTGGGCTCGGGCATGTGCTTG
318 CCCAGTCTAAGATCGGACCAGACAGAGGGCTACGACAGCACATGCTGGGCTCGAGCATGTGCTGG
* *
12435617 TGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACATAACCGATGGCAT
383 TGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACATAACCGACGGCAT
*
12435682 CGGGGTTCCGACGATCGGAGGGGCCGGGAAGGGCGTGCGCACATGATGTGCGATGGGTGCTGGCA
448 CGGGGGTCCGACGATCGGAGGGGCCGGG--GGGCGTGCGCACATGATGTGCGATGGGTGCTGGCA
*
12435747 CATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
511 CATGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
** * * *
12435811 ATTTGAGATTTTACAGGTTTGCTGTAAATAGGCATTAAAGTGTTTGAAATGGGGTCACTTTTTTC
576 ATTTGAGATTTTACAGGTTTGCTACAAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
12435876 AAATAGTCACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCCAAAAAAA
641 AAATAGTCACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATG-CAAAAAAA
* * ** * *
12435941 ATACAAGGATCACGTCTACCAATTTTGGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAATCTC
705 ATACAAGGATCACGCCTACCAAGTTTGGCACCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCC
* * *
12436006 AAACAGTAAAAAGGTTCGAAAATCGTAAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAC
770 AAACAGTAAAAAGGTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
12436071 GTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAC
835 GTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGAAC
* *
12436128 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATTCCG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
12436193 TC-CTCTGGCCGGCGTAGTGCCCGCCCA-CTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCT
66 TCTCTCTGGCCGGCGTAGTGCCCGCCCACCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *
12436256 TTCCCAGTCTAAGATCAGA-CAGGA-TCAAGGGTTGCAGTAGCAAGAATGACTGCACGTAAAGGG
131 TTCCCAGTCTAAGATCAGACCA-GACT-AAGGGTTGCAGCAGCAAGAATCACAGCACGTAAAGGG
* * *
12436319 GGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTA-AGCG-CACGCACGCTC
194 GGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGC-AGAGCGTC-CGCACGCTC
**
12436382 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCA
257 GTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCA
* * * ** *
12436447 GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCT
322 GTCTAAGATCGGACCAGACAGAGGGCTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * * * *
12436512 GCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCGGAGAACTTGACCGACGGCATTGGG
387 ACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACATAACCGACGGCATCGGG
** * * * *
12436577 GGTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
452 GGTCCGACGATCGGAGGGGCCGGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGCACATGGC
** *
12436642 CCTTATATTGGCCTGCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
517 CCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
12436707 GATTTTACAGGTTTGCTACGAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
582 GATTTTACAGGTTTGCTACAAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAG
* * *
12436772 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAATACAAT
647 TCACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCAAAAAAAATACAAG
* *
12436837 GATCATGCCTACCAAGTTTGGCACCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGT
712 GATCACGCCTACCAAGTTTGGCACCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACAGT
* *
12436902 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
777 AAAAAGGTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
12436967 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGGCATTGGAAT
842 CTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGAAC
* * *
12437017 GCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGTTCCACGGCTTGCGCATCCCG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
12437082 TCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACG
66 TCTCTCTGGCCGGCGTAGTG--C-CC-G-CC-CAC-CTCGTTTCGTCGGTTGGCTTAGGCATACG
* *
12437147 GAGTTCAATCCCAATCTAA
124 GAGTTCATTCCCAGTCTAA
12437166 ATTCGAATCA
Statistics
Matches: 929, Mismatches: 95, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
889 318 0.34
890 145 0.16
891 327 0.35
892 2 0.00
893 2 0.00
894 2 0.00
895 10 0.01
896 2 0.00
898 44 0.05
899 14 0.02
900 59 0.06
901 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCACCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCAGCAGCAAGAATCACAGCACGTAAAGGGGG
ACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCAGAGCGTCCGCACGCTCGTTT
CATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCT
AAGATCGGACCAGACAGAGGGCTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAT
TTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACATAACCGACGGCATCGGGGGTC
CGACGATCGGAGGGGCCGGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGCACATGGCCCTT
ATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTACAAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCAC
AAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCAAAAAAAATACAAGGATC
ACGCCTACCAAGTTTGGCACCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACAGTAAAA
AGGTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGAAC
Found at i:12437446 original size:9 final size:10
Alignment explanation
Indices: 12437434--12437487 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
12437424 TTTTTTCTTT
12437434 TGTATT-TTA
1 TGTATTATTA
*
12437443 TGTATTTTTA
1 TGTATTATTA
*
12437453 TAT-TTATTA
1 TGTATTATTA
12437462 T-TATTATTA
1 TGTATTATTA
12437471 TGTATTAATATA
1 TGTATT-AT-TA
12437483 TGTAT
1 TGTAT
12437488 ATCTGTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 1 0.03
9 19 0.50
10 9 0.24
11 2 0.05
12 7 0.18
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (10 bp):
TGTATTATTA
Found at i:12437549 original size:23 final size:21
Alignment explanation
Indices: 12437523--12437645 Score: 69
Period size: 22 Copynumber: 5.9 Consensus size: 21
12437513 TAGAATAGAT
12437523 TTATATGTATATTATTTATATA
1 TTATAT-TATATTATTTATATA
*
12437545 GTTATATATTTATTA-TTAT-TA
1 -TTATAT-TATATTATTTATATA
*
12437566 TTATATTATTATTATTTTTATA
1 TTATATTA-TATTATTTATATA
* *
12437588 TTTTATT-TATT-TTTGTAT-
1 TTATATTATATTATTTATATA
* *
12437606 TTTTATT-TATCTAATTATATA
1 TTATATTATAT-TATTTATATA
* * *
12437627 TCTATTTTTTTTTATTTAT
1 T-TATATTATATTATTTAT
12437646 CCTATAATAT
Statistics
Matches: 80, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
18 10 0.12
19 8 0.10
20 20 0.25
21 6 0.08
22 22 0.28
23 14 0.17
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTATATTATATTATTTATATA
Found at i:12437550 original size:17 final size:17
Alignment explanation
Indices: 12437521--12437574 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 17
12437511 TTTAGAATAG
12437521 ATTTATAT-G-TATATT
1 ATTTATATAGTTATATT
12437536 ATTTATATAGTTATA-T
1 ATTTATATAGTTATATT
12437552 ATTTAT-TA-TTATTATT
1 ATTTATATAGTTA-TATT
12437568 ATATTAT
1 AT-TTAT
12437575 TATTATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.09
15 12 0.35
16 11 0.32
17 8 0.24
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (17 bp):
ATTTATATAGTTATATT
Found at i:12437562 original size:3 final size:3
Alignment explanation
Indices: 12437554--12437594 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
12437544 AGTTATATAT
*
12437554 TTA TTA TTA TTA TTA -TA TTA TTA TTA TTT TTA -TA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
12437595 TATTTTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 6 0.18
3 27 0.82
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:12437575 original size:17 final size:17
Alignment explanation
Indices: 12437530--12437594 Score: 71
Period size: 17 Copynumber: 3.7 Consensus size: 17
12437520 GATTTATATG
12437530 TATATTATTTATATAGTTA-
1 TATATTA-TTAT-TA-TTAT
12437549 TATATTTATTATTATTAT
1 TATA-TTATTATTATTAT
*
12437567 TATATTATTATTATTTT
1 TATATTATTATTATTAT
12437584 TATATT-TTATT
1 TATATTATTATT
12437595 TATTTTTGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
16 5 0.12
17 21 0.49
18 6 0.14
19 8 0.19
20 3 0.07
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
TATATTATTATTATTAT
Found at i:12437597 original size:17 final size:17
Alignment explanation
Indices: 12437546--12437615 Score: 70
Period size: 17 Copynumber: 3.9 Consensus size: 17
12437536 ATTTATATAG
*
12437546 TTATATATTTATTATTATTA
1 TTATAT-TTTA-T-TTATTT
12437566 TTATATTATTA-TTATTT
1 TTATATT-TTATTTATTT
12437583 TTATATTTTATTTATTT
1 TTATATTTTATTTATTT
*
12437600 TTGTATTTTTATTTAT
1 TTATA-TTTTATTTAT
12437616 CTAATTATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
16 3 0.07
17 22 0.49
18 10 0.22
19 1 0.02
20 9 0.20
ACGTcount: A:0.27, C:0.00, G:0.01, T:0.71
Consensus pattern (17 bp):
TTATATTTTATTTATTT
Found at i:12437623 original size:26 final size:25
Alignment explanation
Indices: 12437534--12437642 Score: 82
Period size: 26 Copynumber: 4.4 Consensus size: 25
12437524 TATATGTATA
* * *
12437534 TTATTTATATAGTTATATATTTATTA
1 TTATTTAT-TAATTATATATCTATTT
12437560 TTA-TTATTATATTAT-TAT-TATTT
1 TTATTTATTA-ATTATATATCTATTT
* * * *
12437583 TTATATT-TTATTTATTTTTGTATTT
1 TTAT-TTATTAATTATATATCTATTT
12437608 TTATTTATCTAATTATATATCTATTT
1 TTATTTAT-TAATTATATATCTATTT
*
12437634 TTTTTTATT
1 TTATTTATT
12437643 TATCCTATAA
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
23 11 0.16
24 12 0.18
25 21 0.31
26 23 0.34
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (25 bp):
TTATTTATTAATTATATATCTATTT
Found at i:12437633 original size:34 final size:32
Alignment explanation
Indices: 12437595--12437710 Score: 107
Period size: 30 Copynumber: 3.5 Consensus size: 32
12437585 ATATTTTATT
12437595 TATTTTTGTATTTTTATTTATCTAATTATATATC
1 TATTTTT-T-TTTTTATTTATCTAATTATATATC
*
12437629 TA--TTTTTTTTTATTTATCCT-ATAATATATC
1 TATTTTTTTTTTTATTTAT-CTAATTATATATC
*
12437659 TATTTTTTTTATTTATCTGT-TCTAATTATCTAT-
1 TATTTTTTTT-TTTAT-T-TATCTAATTATATATC
12437692 TATTTTTTTATATTTATTT
1 TATTTTTTT-T-TTTATTT
12437711 GATTTTTATT
Statistics
Matches: 71, Mismatches: 3, Indels: 18
0.77 0.03 0.20
Matches are distributed among these distances:
30 22 0.31
31 3 0.04
32 10 0.14
33 17 0.24
34 18 0.25
35 1 0.01
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (32 bp):
TATTTTTTTTTTTATTTATCTAATTATATATC
Found at i:12437641 original size:30 final size:29
Alignment explanation
Indices: 12437605--12437702 Score: 117
Period size: 30 Copynumber: 3.2 Consensus size: 29
12437595 TATTTTTGTA
12437605 TTTTTATTTATCTAATTATATATCTATTTT
1 TTTTTATTTATCT-ATTATATATCTATTTT
*
12437635 TTTTTATTTATCCTATAATATATCTA-TTT
1 TTTTTATTTAT-CTATTATATATCTATTTT
* *
12437664 TTTTTATTTATCTGTTCTAATTATCTATTATT
1 TTTTTATTTATCTATTAT-A-TATCTATT-TT
12437696 TTTTTAT
1 TTTTTAT
12437703 ATTTATTTGA
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
28 4 0.07
29 15 0.25
30 28 0.47
31 3 0.05
32 9 0.15
ACGTcount: A:0.24, C:0.08, G:0.01, T:0.66
Consensus pattern (29 bp):
TTTTTATTTATCTATTATATATCTATTTT
Found at i:12438575 original size:8 final size:8
Alignment explanation
Indices: 12438562--12438587 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
12438552 GTTTTGTTTT
12438562 TTAATTTA
1 TTAATTTA
12438570 TTAATTTA
1 TTAATTTA
12438578 TTAATTTA
1 TTAATTTA
12438586 TT
1 TT
12438588 TATTAGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTAATTTA
Found at i:12438625 original size:22 final size:20
Alignment explanation
Indices: 12438600--12438711 Score: 78
Period size: 18 Copynumber: 5.8 Consensus size: 20
12438590 TTAGATTAGG
12438600 TTTATTTAATATTCTTTTTAT
1 TTTATTT-ATATTCTTTTTAT
12438621 CTTTATTT-TATT-TTTTTAT
1 -TTTATTTATATTCTTTTTAT
*
12438640 TTT-TTTACT-TT-TCTTTAT
1 TTTATTTA-TATTCTTTTTAT
*
12438658 TTT-TTT-TATTTTTTTTAT
1 TTTATTTATATTCTTTTTAT
* * *
12438676 TTTATTTTTATT-TATTTCT
1 TTTATTTATATTCTTTTTAT
*
12438695 TTTATTCTATTTTCTTT
1 TTTATT-TATATTCTTT
12438712 AAATAAAAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
16 1 0.01
17 5 0.07
18 26 0.35
19 22 0.29
20 12 0.16
21 2 0.03
22 7 0.09
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTATTTATATTCTTTTTAT
Found at i:12438644 original size:27 final size:27
Alignment explanation
Indices: 12438609--12438697 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 27
12438599 GTTTATTTAA
12438609 TATTCTTTTTATCTTTATTTTATTTTTT
1 TATT-TTTTTATCTTTATTTTATTTTTT
12438637 TATTTTTTTA-CTTT-TCTTTATTTTTTT
1 TATTTTTTTATCTTTAT-TTTA-TTTTTT
*
12438664 TATTTTTTTTAT-TTTATTTTTATTTATT
1 TA-TTTTTTTATCTTTA-TTTTATTTTTT
*
12438692 TCTTTT
1 TATTTT
12438698 ATTCTATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
25 1 0.02
26 8 0.15
27 18 0.34
28 21 0.40
29 4 0.08
30 1 0.02
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (27 bp):
TATTTTTTTATCTTTATTTTATTTTTT
Found at i:12438645 original size:9 final size:9
Alignment explanation
Indices: 12438609--12438688 Score: 83
Period size: 9 Copynumber: 8.6 Consensus size: 9
12438599 GTTTATTTAA
*
12438609 TATTCTTTT
1 TATTTTTTT
12438618 TATCTTTATTT
1 TAT-TTT-TTT
12438629 TA-TTTTTT
1 TATTTTTTT
12438637 TA-TTTTTT
1 TATTTTTTT
*
12438645 TACTTTTCTT
1 TA-TTTTTTT
12438655 TATTTTTTT
1 TATTTTTTT
12438664 TATTTTTTT
1 TATTTTTTT
12438673 TATTTTATTTT
1 TA-TTT-TTTT
12438684 TATTT
1 TATTT
12438689 ATTTCTTTTA
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
8 13 0.21
9 23 0.37
10 15 0.24
11 11 0.18
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (9 bp):
TATTTTTTT
Found at i:12438660 original size:24 final size:23
Alignment explanation
Indices: 12438626--12438707 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 23
12438616 TTTATCTTTA
12438626 TTTTA-TT-TTTTTATTTTTTTAC
1 TTTTATTTATTTTTATTTTTTT-C
*
12438648 TTTTCTTTATTTTT-TTTATTTT-
1 TTTTATTTATTTTTATTT-TTTTC
*
12438670 TTTTATTTTATTTTTATTTATTTC
1 TTTTA-TTTATTTTTATTTTTTTC
12438694 TTTTATTCTATTTT
1 TTTTATT-TATTTT
12438708 CTTTAAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
22 8 0.16
23 19 0.38
24 23 0.46
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTATTTATTTTTATTTTTTTC
Found at i:12438679 original size:33 final size:32
Alignment explanation
Indices: 12438620--12438712 Score: 107
Period size: 33 Copynumber: 2.9 Consensus size: 32
12438610 ATTCTTTTTA
*
12438620 TCTTTATTTTATTT-TTTTATTTTTTTACTTT
1 TCTTTATTTTTTTTATTTTATTTTTTTACTTT
* *
12438651 TCTTTATTTTTTTTATTTTTTTTATTTTATTTT
1 TCTTTATTTTTTTTATTTTATTT-TTTTACTTT
* * *
12438684 TATTTATTTCTTTTATTCTATTTTCTTTA
1 TCTTTATTTTTTTTATTTTATTTT-TTTA
12438713 AATAAAAATA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
31 13 0.25
32 8 0.15
33 31 0.60
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (32 bp):
TCTTTATTTTTTTTATTTTATTTTTTTACTTT
Found at i:12438700 original size:9 final size:8
Alignment explanation
Indices: 12438626--12438700 Score: 80
Period size: 9 Copynumber: 8.9 Consensus size: 8
12438616 TTTATCTTTA
12438626 TTTTATTT
1 TTTTATTT
12438634 TTTTATTT
1 TTTTATTT
12438642 TTTTACTTT
1 TTTTA-TTT
12438651 TCTTTATTTT
1 T-TTTA-TTT
12438661 TTTTATTTT
1 TTTTA-TTT
12438670 TTTTATTT
1 TTTTATTT
*
12438678 TATT-TTT
1 TTTTATTT
*
12438685 ATTTATTT
1 TTTTATTT
12438693 CTTTTATT
1 -TTTTATT
12438701 CTATTTTCTT
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
7 5 0.09
8 22 0.38
9 23 0.40
10 8 0.14
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTATTT
Found at i:12438712 original size:14 final size:13
Alignment explanation
Indices: 12438622--12438711 Score: 59
Period size: 12 Copynumber: 7.2 Consensus size: 13
12438612 TCTTTTTATC
12438622 TTTATTTTATTT-T
1 TTTA-TTTATTTCT
*
12438635 TTTATTTTTTTACT
1 TTTATTTATTT-CT
*
12438649 TTTCTTTA--T-T
1 TTTATTTATTTCT
*
12438659 TTT-TTTATTTTT
1 TTTATTTATTTCT
*
12438671 TTTATTT-TAT-T
1 TTTATTTATTTCT
12438682 TTTATTTATTTCT
1 TTTATTTATTTCT
12438695 TTTATTCTATTTTCT
1 TTTATT-TA-TTTCT
12438710 TT
1 TT
12438712 AAATAAAAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
9 4 0.06
10 4 0.06
11 9 0.15
12 15 0.24
13 14 0.23
14 9 0.15
15 7 0.11
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTATTTATTTCT
Found at i:12438793 original size:58 final size:58
Alignment explanation
Indices: 12438725--12439070 Score: 432
Period size: 59 Copynumber: 5.9 Consensus size: 58
12438715 TAAAAATAAA
*
12438725 AAATTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
*** * *
12438783 AAATTTCAAAAAGGGT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGT
1 AAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
12438839 AAATTTTCAAAAAAAAAAAAAGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAA-TTTC-----AAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
12438903 CGAAATTTC-CAAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAAT
1 --AAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
** *
12438962 AAATTTTCAAAAAAAGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAA-TTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
*
12439021 AAATTTC-AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATTTCAAAAAAAAT-ATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
12439071 CTACACAAGA
Statistics
Matches: 247, Mismatches: 26, Indels: 30
0.82 0.09 0.10
Matches are distributed among these distances:
56 36 0.15
57 18 0.07
58 52 0.21
59 92 0.37
60 1 0.00
62 5 0.02
63 4 0.02
64 32 0.13
65 4 0.02
66 3 0.01
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (58 bp):
AAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:12443000 original size:19 final size:19
Alignment explanation
Indices: 12442969--12443042 Score: 80
Period size: 19 Copynumber: 3.8 Consensus size: 19
12442959 AACAATAGGT
12442969 GAAGAATGAGAAAAAAAAA
1 GAAGAATGAGAAAAAAAAA
12442988 GAAG-ATGATGAAAAAAAAA
1 GAAGAATGA-GAAAAAAAAA
* *
12443007 GAAAAAAGA-AAAAAAAAA
1 GAAGAATGAGAAAAAAAAA
*
12443025 GAAAGAAAGAAGAAAAAA
1 G-AAGAATG-AGAAAAAA
12443043 TGAAAAAACA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
18 14 0.30
19 23 0.49
20 4 0.09
21 6 0.13
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (19 bp):
GAAGAATGAGAAAAAAAAA
Found at i:12443013 original size:7 final size:7
Alignment explanation
Indices: 12443001--12443050 Score: 64
Period size: 7 Copynumber: 6.9 Consensus size: 7
12442991 GATGATGAAA
12443001 AAAAAAG
1 AAAAAAG
12443008 AAAAAAG
1 AAAAAAG
*
12443015 AAAAAAA
1 AAAAAAG
12443022 AAAGAAAG
1 AAA-AAAG
*
12443030 AAAGAAG
1 AAAAAAG
12443037 AAAAAATG
1 AAAAAA-G
12443045 AAAAAA
1 AAAAAA
12443051 CAGATTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
7 24 0.65
8 13 0.35
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:12443022 original size:11 final size:11
Alignment explanation
Indices: 12442998--12443042 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
12442988 GAAGATGATG
*
12442998 AAAAAA-AAAG
1 AAAAAAGAAAA
12443008 AAAAAAGAAAA
1 AAAAAAGAAAA
*
12443019 AAAAAAGAAAG
1 AAAAAAGAAAA
*
12443030 AAAGAAGAAAA
1 AAAAAAGAAAA
12443041 AA
1 AA
12443043 TGAAAAAACA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
10 6 0.20
11 24 0.80
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:12443023 original size:22 final size:22
Alignment explanation
Indices: 12442998--12443042 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
12442988 GAAGATGATG
12442998 AAAAAAAAAGAAAAAAGAAAAA
1 AAAAAAAAAGAAAAAAGAAAAA
* *
12443020 AAAAAGAAAGAAAGAAGAAAAA
1 AAAAAAAAAGAAAAAAGAAAAA
12443042 A
1 A
12443043 TGAAAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAGAAAAAAGAAAAA
Found at i:12443041 original size:37 final size:36
Alignment explanation
Indices: 12442979--12443050 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 36
12442969 GAAGAATGAG
*
12442979 AAAAAAAAAGAAGATGATGAAAAAAAAAGAAAAAAGA
1 AAAAAAAAAGAAGA-GAAGAAAAAAAAAGAAAAAAGA
*
12443016 AAAAAAAAAGAA-AGAAAGAAGAAAAAATGAAAAAA
1 AAAAAAAAAGAAGAG-AAGAA-AAAAAAAGAAAAAA
12443051 CAGATTCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 1 0.03
36 5 0.16
37 25 0.81
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (36 bp):
AAAAAAAAAGAAGAGAAGAAAAAAAAAGAAAAAAGA
Found at i:12443047 original size:19 final size:18
Alignment explanation
Indices: 12442998--12443050 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
12442988 GAAGATGATG
12442998 AAAAAAAAAGAAAAAAGA
1 AAAAAAAAAGAAAAAAGA
12443016 AAAAAAAAAGAAAGAAAGA
1 AAAAAAAAAGAAA-AAAGA
* *
12443035 AGAAAAAATGAAAAAA
1 AAAAAAAAAGAAAAAA
12443051 CAGATTCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 16 0.50
19 16 0.50
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAGA
Found at i:12444305 original size:42 final size:41
Alignment explanation
Indices: 12444239--12444623 Score: 522
Period size: 42 Copynumber: 9.5 Consensus size: 41
12444229 CATGATTGTC
*
12444239 GAGGAGCAATTTACTTTTCCAAAGTCATGGTGCCTCTGTTTA
1 GAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
*
12444281 GAGGAGCAATTTACTTTCCAAAAGTCGTGGTACCTCTGTTTA
1 GAGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTA
12444323 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
*
12444365 GAGTAGCAATTTACTTTTCCAAAGTC---GTG-----G--TA
1 GAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
*
12444397 -CGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
* * *
12444438 GAGGAGCAATTTATTTTTCAAAGTCGTGGTACCTCTGTTTA
1 GAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTA
* * *
12444479 GAGGAGCAATTTACTTTTCAAAAGTCGTGGTGTCTCTATTTA
1 GAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
* *
12444521 GAGGAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTA
12444562 GAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTA
*
12444603 GAGGAGCAATTTATTTTCCAA
1 GAGGAGCAATTTACTTTCCAA
12444624 GGAGCAATTT
Statistics
Matches: 307, Mismatches: 22, Indels: 29
0.86 0.06 0.08
Matches are distributed among these distances:
31 23 0.07
32 2 0.01
34 4 0.01
39 4 0.01
41 129 0.42
42 140 0.46
43 5 0.02
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.36
Consensus pattern (41 bp):
GAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTA
Found at i:12444537 original size:83 final size:84
Alignment explanation
Indices: 12444398--12444619 Score: 387
Period size: 83 Copynumber: 2.7 Consensus size: 84
12444388 GTCGTGGTAC
12444398 GGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAGT
1 GGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAGT
12444462 CGTGGTACCTCTGTTTAGA
66 CGTGGTACCTCTGTTTAGA
* * *
12444481 GGAGCAATTTACTTTTCAAAAGTCGTGGTGTCTCTATTTAGAGGAGCAATTTA-TTTTCAAAAGT
1 GGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAGT
*
12444545 CGTGGTGCCTCTGTTTAGA
66 CGTGGTACCTCTGTTTAGA
12444564 GGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTT
1 GGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTT
12444620 CCAAGGAGCA
Statistics
Matches: 130, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
82 42 0.32
83 88 0.68
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (84 bp):
GGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAGT
CGTGGTACCTCTGTTTAGA
Found at i:12444621 original size:41 final size:41
Alignment explanation
Indices: 12444398--12444623 Score: 371
Period size: 41 Copynumber: 5.5 Consensus size: 41
12444388 GTCGTGGTAC
12444398 GGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
* *
12444440 GGAGCAATTTATTTTTCAAAGTCGTGGTACCTCTGTTTAGA
1 GGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
* * *
12444481 GGAGCAATTTACTTTTCAAAAGTCGTGGTGTCTCTATTTAGA
1 GGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
*
12444523 GGAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
*
12444564 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
12444605 GGAGCAATTTATTTTCCAA
1 GGAGCAATTTATTTTCCAA
12444624 GGAGCAATTT
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
41 124 0.73
42 47 0.27
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (41 bp):
GGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
Found at i:12444657 original size:61 final size:60
Alignment explanation
Indices: 12444563--12444684 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 60
12444553 CTCTGTTTAG
*
12444563 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCA
1 AGGAGCAATTTACTTCCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCA
12444623 AGGAGCAATTTACTTCCCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCA
1 AGGAGCAATTTACTT-CCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCA
12444684 A
1 A
12444685 AGTCGTGGAA
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
60 15 0.25
61 45 0.75
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (60 bp):
AGGAGCAATTTACTTCCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCA
Found at i:12444692 original size:41 final size:42
Alignment explanation
Indices: 12444623--12444711 Score: 135
Period size: 41 Copynumber: 2.1 Consensus size: 42
12444613 TTATTTTCCA
**
12444623 AGGAGCAATTTACTTCCCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTCCCCAAAGTCGTGGAACCTCTGTTTAG
**
12444665 AGGAGCAATTTA-TTTTCCAAAGTCGTGGAACCTCTGTTTAG
1 AGGAGCAATTTACTTCCCCAAAGTCGTGGAACCTCTGTTTAG
12444706 AGGAGC
1 AGGAGC
12444712 TTTGGTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 31 0.72
42 12 0.28
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (42 bp):
AGGAGCAATTTACTTCCCCAAAGTCGTGGAACCTCTGTTTAG
Found at i:12444737 original size:10 final size:10
Alignment explanation
Indices: 12444718--12444762 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
12444708 GAGCTTTGGT
12444718 AAAA-AAAAA
1 AAAACAAAAA
12444727 AAAACAAAAA
1 AAAACAAAAA
*
12444737 AAAAC-ACAA
1 AAAACAAAAA
12444746 AAAACAAAAA
1 AAAACAAAAA
*
12444756 ATAACAA
1 AAAACAA
12444763 TGTTGAGCTG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 12 0.39
10 19 0.61
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (10 bp):
AAAACAAAAA
Found at i:12444737 original size:12 final size:12
Alignment explanation
Indices: 12444720--12444755 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
12444710 GCTTTGGTAA
12444720 AAAAAAAAAAAC
1 AAAAAAAAAAAC
*
12444732 AAAAAAAAACAC
1 AAAAAAAAAAAC
12444744 AAAAAACAAAAA
1 AAAAAA-AAAAA
12444756 ATAACAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:12444747 original size:19 final size:19
Alignment explanation
Indices: 12444725--12444761 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
12444715 GGTAAAAAAA
12444725 AAAAAACAAAAAAAAACAC
1 AAAAAACAAAAAAAAACAC
*
12444744 AAAAAACAAAAAATAACA
1 AAAAAACAAAAAAAAACA
12444762 ATGTTGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.84, C:0.14, G:0.00, T:0.03
Consensus pattern (19 bp):
AAAAAACAAAAAAAAACAC
Found at i:12445040 original size:15 final size:15
Alignment explanation
Indices: 12445022--12445070 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
12445012 TTTAGAATAG
12445022 ATTTATATGTATATT
1 ATTTATATGTATATT
12445037 ATTTATATAGT-TATAT
1 ATTTATAT-GTATAT-T
12445053 ATTTATTAT-TATATT
1 ATTTA-TATGTATATT
12445068 ATT
1 ATT
12445071 ATTATTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 16 0.53
16 11 0.37
17 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (15 bp):
ATTTATATGTATATT
Found at i:12445050 original size:23 final size:22
Alignment explanation
Indices: 12445024--12445082 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
12445014 TAGAATAGAT
*
12445024 TTATATGTATATTATTTATATAG
1 TTATATATATATTA-TTATATAG
*
12445047 TTATATATTTATTATTATATTA-
1 TTATATATATATTATTATA-TAG
12445069 TTAT-TAT-TATTATT
1 TTATATATATATTATT
12445083 TTTATATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 7 0.21
21 3 0.09
22 9 0.27
23 14 0.42
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (22 bp):
TTATATATATATTATTATATAG
Found at i:12445051 original size:17 final size:16
Alignment explanation
Indices: 12445025--12445126 Score: 76
Period size: 14 Copynumber: 6.6 Consensus size: 16
12445015 AGAATAGATT
12445025 TATATGTATATTATTTA
1 TATAT-TATATTATTTA
12445042 TATAGTTATA-TATTTA
1 TATA-TTATATTATTTA
12445058 T-TATTATATTA-TTA
1 TATATTATATTATTTA
12445072 T-TATTATTATT-TTTA
1 TATATTA-TATTATTTA
* *
12445087 TATTTTAT-TTATTTT
1 TATATTATATTATTTA
*
12445102 TGTATT-T-TTATTTA
1 TATATTATATTATTTA
*
12445116 TCTAATTATAT
1 TAT-ATTATAT
12445127 ATCTGTTATT
Statistics
Matches: 70, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
14 25 0.36
15 23 0.33
16 12 0.17
17 9 0.13
18 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (16 bp):
TATATTATATTATTTA
Found at i:12445063 original size:3 final size:3
Alignment explanation
Indices: 12445055--12445095 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
12445045 AGTTATATAT
*
12445055 TTA TTA TTA -TA TTA TTA TTA TTA TTA TTT TTA -TA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
12445096 TATTTTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 6 0.18
3 27 0.82
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:12445074 original size:37 final size:38
Alignment explanation
Indices: 12445024--12445128 Score: 103
Period size: 37 Copynumber: 2.8 Consensus size: 38
12445014 TAGAATAGAT
*
12445024 TTATATGTA-TATTATTTATATAGTTATATATTTA-TTA
1 TTATATGTATTATTATTTAT-TAATTATATATTTATTTA
* *
12445061 TTATAT-TATTATTA-TTATTATTTTTATATTTTATTTA
1 TTATATGTATTATTATTTATTAATTATATA-TTTATTTA
* *
12445098 TT-TTTGTATTTTTATTTATCTAATTATATAT
1 TTATATGTATTATTATTTAT-TAATTATATAT
12445129 CTGTTATTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
35 8 0.14
36 12 0.21
37 23 0.41
38 5 0.09
39 8 0.14
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (38 bp):
TTATATGTATTATTATTTATTAATTATATATTTATTTA
Found at i:12445146 original size:32 final size:31
Alignment explanation
Indices: 12445106--12445216 Score: 114
Period size: 32 Copynumber: 3.4 Consensus size: 31
12445096 TATTTTTGTA
12445106 TTTTTATTTATCTAATTATATATCTGTTATTT
1 TTTTTATTTATCT-ATTATATATCTGTTATTT
* *
12445138 TTTTTATTTATCCTATAATATATCTGTTTTTT
1 TTTTTATTTAT-CTATTATATATCTGTTATTT
* * *
12445170 TTTTTCGATTTATCTGTTCTGATTATCTATTATTT
1 TTTTT--ATTTATCTATTAT-A-TATCTGTTATTT
12445205 TTTTATATTTAT
1 TTTT-TATTTAT
12445217 TTGATTTTTA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
32 32 0.48
33 6 0.09
34 13 0.20
35 14 0.21
36 1 0.02
ACGTcount: A:0.22, C:0.08, G:0.05, T:0.66
Consensus pattern (31 bp):
TTTTTATTTATCTATTATATATCTGTTATTT
Found at i:12446079 original size:4 final size:4
Alignment explanation
Indices: 12446072--12446193 Score: 62
Period size: 4 Copynumber: 30.0 Consensus size: 4
12446062 TTTTTTTTTA
* *
12446072 ATTT ATTT ATTT ATTT ATTT A-TT AGATT AGGTTT ATTT AATATT CTTT
1 ATTT ATTT ATTT ATTT ATTT ATTT A-TTT A--TTT ATTT -AT-TT ATTT
* *
12446120 -TTAT ATTT ATTTT ATTT -TTT ATTT TTTT ACTTTT CTTT ATTT -TTT
1 ATT-T ATTT A-TTT ATTT ATTT ATTT ATTT A--TTT ATTT ATTT ATTT
12446165 A-TT -TTT ATTT A-TT -TTT ATTT ATTCT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATT-T ATTT
12446194 TCTTTAAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 34
0.70 0.04 0.25
Matches are distributed among these distances:
3 19 0.20
4 51 0.54
5 16 0.17
6 9 0.09
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:12446142 original size:27 final size:25
Alignment explanation
Indices: 12446060--12446199 Score: 83
Period size: 25 Copynumber: 5.3 Consensus size: 25
12446050 CCGCTCCAGG
*
12446060 TTTTTTT-TTTTAATTTATTTATTTA
1 TTTTTTTATTTTATTTTATTT-TTTA
* * **
12446085 TTTATTTATTAGATTAGGTTTATTTAATA
1 TTTTTTTATT---TTA-TTTTATTTTTTA
12446114 TTCTTTTTATATTTATTTTATTTTTTA
1 TT-TTTTTAT-TTTATTTTATTTTTTA
*
12446141 TTTTTTTACTTTT-CTTTATTTTTTA
1 TTTTTTTA-TTTTATTTTATTTTTTA
12446166 --TTTTTA-TTTATTTTTATTTATTCTA
1 TTTTTTTATTTTA-TTTTATTT-TT-TA
12446191 TTTTCTTTA
1 TTTT-TTTA
12446200 AATAAAAATA
Statistics
Matches: 90, Mismatches: 10, Indels: 27
0.71 0.08 0.21
Matches are distributed among these distances:
21 3 0.03
23 13 0.14
24 2 0.02
25 19 0.21
26 11 0.12
27 14 0.16
28 7 0.08
29 7 0.08
30 13 0.14
31 1 0.01
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (25 bp):
TTTTTTTATTTTATTTTATTTTTTA
Found at i:12446163 original size:10 final size:9
Alignment explanation
Indices: 12446112--12446187 Score: 54
Period size: 10 Copynumber: 8.4 Consensus size: 9
12446102 GTTTATTTAA
12446112 TATTCTTTTT
1 TATT-TTTTT
*
12446122 ATATTTATTT
1 -TATTTTTTT
12446132 TA--TTTTT
1 TATTTTTTT
12446139 TA-TTTTTT
1 TATTTTTTT
*
12446147 TACTTTTCTT
1 TA-TTTTTTT
12446157 TA--TTTTT
1 TATTTTTTT
12446164 TATTTTTATT
1 TATTTTT-TT
12446174 TATTTTTATT
1 TATTTTT-TT
12446184 TATT
1 TATT
12446188 CTATTTTCTT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
7 12 0.22
8 7 0.13
9 5 0.09
10 27 0.49
11 4 0.07
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (9 bp):
TATTTTTTT
Found at i:12446164 original size:17 final size:17
Alignment explanation
Indices: 12446137--12446180 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
12446127 TATTTTATTT
*
12446137 TTTATTTTTTTACTTTTC
1 TTTA-TTTTTTACTTTTA
*
12446155 TTTATTTTTTATTTTTA
1 TTTATTTTTTACTTTTA
12446172 TTTATTTTT
1 TTTATTTTT
12446181 ATTTATTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTATTTTTTACTTTTA
Found at i:12446168 original size:41 final size:42
Alignment explanation
Indices: 12446117--12446199 Score: 109
Period size: 41 Copynumber: 2.0 Consensus size: 42
12446107 TTTAATATTC
*
12446117 TTTTTATATTTAT-TTTATTTTTTATTT-TTTTACTTTTCTTTA
1 TTTTTATATTTATATTTA-TTTTTATTTATTCTA-TTTTCTTTA
*
12446159 TTTTT-TATTTTTATTTATTTTTATTTATTCTATTTTCTTTA
1 TTTTTATATTTATATTTATTTTTATTTATTCTATTTTCTTTA
12446200 AATAAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
41 24 0.65
42 13 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (42 bp):
TTTTTATATTTATATTTATTTTTATTTATTCTATTTTCTTTA
Found at i:12446599 original size:58 final size:58
Alignment explanation
Indices: 12446220--12446613 Score: 498
Period size: 62 Copynumber: 6.7 Consensus size: 58
12446210 AAAAATTCAA
*
12446220 AAAAAAAT-ATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
* * *
12446277 ---AAAA-GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTTAAAAATCAAATTTC
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTC
*
12446332 -CAAAAATGATTTTTGGGG-AAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTC
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-----AAAAATAAATTTC
* * * * *
12446393 -CAAAAATTATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAGTAAATTTTC
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
* *
12446451 AAAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 ---AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
* **
12446513 AAAAAAAGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
12446571 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
12446614 CTACACAAGA
Statistics
Matches: 299, Mismatches: 22, Indels: 31
0.85 0.06 0.09
Matches are distributed among these distances:
54 42 0.14
55 7 0.02
57 36 0.12
58 57 0.19
59 53 0.18
61 23 0.08
62 81 0.27
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
Found at i:12448538 original size:26 final size:26
Alignment explanation
Indices: 12448501--12448553 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12448491 GTTGACTTAG
12448501 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12448527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12448553 G
1 G
12448554 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12449166 original size:718 final size:720
Alignment explanation
Indices: 12447709--12449180 Score: 2170
Period size: 718 Copynumber: 2.0 Consensus size: 720
12447699 CAATCCTCGA
* * * *
12447709 CTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCTCGTATGCTCGTTTCGTGTGTTGACTTAGGC
1 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCATGCTCGTTTCATGGGTTGACTTAGGC
* * * * *
12447774 ATACGGAGTTCATTCCTAGTCTAAGCATACAAAGTTTATTCCCAGTCTAAGATCGGACTGGACTG
66 ATACGAAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * * * *** *
12447839 AGGGTTGCAACAGCAGATGCTGGGCTCGGGCATGTGTTGGTGTCATATTTTTCTTTGTCGGGGCA
131 AGGGTTACAACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCCCCGAGGCA
* ** *
12447904 CCATTGTCGGAGCATCGTCGGAGAACCTGACCAGCAGCATTGGTGTTCCGGTGATCGGGGGGGCC
196 CCATCGTCGGAGCATCACCGGAGAACCTGACCAG-AGC--T-GTG-T-C---GATCGGGGGAGCC
12447969 GAGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCC
252 GAGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCC
*
12448034 CTCGTCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAA
317 CTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAA
* * **
12448099 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
382 TAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTCAAACGGTCACAAAATCTTGTACACTTCAA
* *
12448164 GTTTTTAGCTAAATTTTTTTACGCATGCAAAAAAAAATACAAGGATCACGTCTACCACGTTTGGG
447 GTTTTTAGCTAAATTGTTTTACGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
12448229 GCCTAAACTCCTTCCAAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
512 GCCAAAACTCCTTCCAAAAAAATTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCATGAAA
12448294 AATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
577 AATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * *
12448359 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACC
642 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACC
*
12448424 TTATCGATCCACGG
707 CTATCGATCCACGG
* *
12448438 CTTACGCATCCCGCCCCTCTGGCCGACTGAGCGC-CTGCA-GACTCGTTTTATGGGTTGACTTAG
1 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTC-GCATG-CTCGTTTCATGGGTTGACTTAG
**
12448501 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
64 GCATACGAAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* *
12448566 CGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCCCCGAGG
129 CGAGGGTTACAACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCCCCGAGG
* *
12448631 CACCATCG-CTGGAGCATCACCGGAGAACCTGACC-G-GC-G-G-C-ATTGGGGGAGCCGGGGGG
194 CACCATCGTC-GGAGCATCACCGGAGAACCTGACCAGAGCTGTGTCGATCGGGGGAGCCGAGGGG
* * *
12448689 TTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
258 -TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCCCTCAT
*
12448754 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
322 CAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGC
* *
12448819 CTTTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAACGGTCTCAAAATCTTGTACACTTCAAGTT
386 CATTAAAGTGTCTGAAATGGGGAAAC-TTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTT
* ** * *
12448884 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
450 TTTAGCTAAATTGTTTTACGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
12448949 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAA
515 AAAACTCCTTCC-AAAAAAATTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCATGAAAAA
* *
12449014 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTA
579 TAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
12449079 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
644 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
*
12449144 ATCGATCCAGGG
709 ATCGATCCACGG
* *
12449156 CTTGCGCATCCCGTCTCTCTGGCCG
1 CTTGCGCATCCCGCCCCTCTGGCCG
12449181 GCGTAGTGCC
Statistics
Matches: 672, Mismatches: 64, Indels: 25
0.88 0.08 0.03
Matches are distributed among these distances:
714 15 0.02
715 79 0.12
716 68 0.10
717 103 0.15
718 206 0.31
721 1 0.00
722 1 0.00
726 2 0.00
728 4 0.01
729 193 0.29
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (720 bp):
CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCATGCTCGTTTCATGGGTTGACTTAGGC
ATACGAAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTACAACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCCCCGAGGCA
CCATCGTCGGAGCATCACCGGAGAACCTGACCAGAGCTGTGTCGATCGGGGGAGCCGAGGGGTGT
GCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTA
AAGTGTCTGAAATGGGGAAACTTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
TAAATTGTTTTACGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCAAAAAAATTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
CACGG
Found at i:12449416 original size:26 final size:26
Alignment explanation
Indices: 12449386--12449438 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12449376 GTTGACTTAG
12449386 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12449412 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12449438 G
1 G
12449439 ATCGGTCCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12450324 original size:26 final size:26
Alignment explanation
Indices: 12450287--12450339 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12450277 GTTGACTTAG
12450287 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
12450313 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12450339 G
1 G
12450340 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12451367 original size:397 final size:397
Alignment explanation
Indices: 12450612--12451378 Score: 1241
Period size: 397 Copynumber: 1.9 Consensus size: 397
12450602 ACAGGTTTGC
* *
12450612 TGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
1 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
12450677 ACATCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAGAAAAATAGAAGGATCACGTCTACCAA
66 ACATCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
12450742 GTTTGGGGCAAAATTCCTTTCGAAAAAATCTTGAAAAATCTCAAACCGCAAAAAGTTTCAAAAAT
131 GTTTGGGGCAAAAATCCTTTCGAAAAAATCTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT
* *
12450807 CATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
196 CATGAAAAATAGAAAACAAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
12450872 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGGAATATGAAGATGTGCCTAAACCCACC
261 ATGAATTTACAACCCATAAAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCCAAACCCACC
* * * **
12450937 TACCACCCTGTCGATTCACAGCTTGTGCATCCCGTCTCTCTGGCCGACGTAACGCCCGCCCGCCC
326 TACCACCCTATCAATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACGTAACGCCCGCCCGCCC
12451002 GTCGTAA
391 GTCGTAA
12451009 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
1 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
12451074 ACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
66 ACATCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* ** *
12451139 GTTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTAAAAAATCCCAAACCGTTAAAAGTTTTAAAA
131 GTTTGGGG-CAAAAATCCTTTC-GAAAAAATCTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
* *
12451203 ATCGTGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
194 ATCATGAAAAATAGAAAACAAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
12451268 GTATGAATTTACAACCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT-CCCAAACCCA
259 GTATGAATTTACAACCCATAAAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCCAAACCCA
**
12451332 CCTACCACCCTATCAATCCATGGCTTGCACATCCCGTCTCTCTGGCC
324 CCTACCACCCTATCAATCCACAGCTTGCACATCCCGTCTCTCTGGCC
12451379 AGCGTAGTAC
Statistics
Matches: 339, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
397 184 0.54
398 155 0.46
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (397 bp):
TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACATCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCAAAAATCCTTTCGAAAAAATCTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACAAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAACCCATAAAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCCAAACCCACC
TACCACCCTATCAATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACGTAACGCCCGCCCGCCC
GTCGTAA
Found at i:12452278 original size:12 final size:12
Alignment explanation
Indices: 12452261--12452291 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
12452251 GCCGTCGTAG
12452261 TGCCCGCCCGCC
1 TGCCCGCCCGCC
12452273 TGCCCGCCCGCC
1 TGCCCGCCCGCC
12452285 TGCCCGC
1 TGCCCGC
12452292 ACGCTCGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.65, G:0.26, T:0.10
Consensus pattern (12 bp):
TGCCCGCCCGCC
Found at i:12452507 original size:26 final size:26
Alignment explanation
Indices: 12452477--12452527 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12452467 TTCACTTAGG
*
12452477 CATACGGAGTTCATTCCAAGTCTAAC
1 CATACAGAGTTCATTCCAAGTCTAAC
*
12452503 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCAAGTCTAA
12452528 GATCGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCAAGTCTAAC
Found at i:12453126 original size:903 final size:891
Alignment explanation
Indices: 12451586--12453817 Score: 2933
Period size: 903 Copynumber: 2.5 Consensus size: 891
12451576 TTGAGCTAGG
* ** *
12451586 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACAGAGGGTTGTAGCAGCACATCCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGAC-GAGGGTTGCGGCAGCACATGCTGGG
* * * *
12451650 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACTATCGTCGGATCATCACCGGAGA
64 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCG-GG-------G-C--ATCATCGCCGGAGA
* * * *
12451715 ACTTGACCGGCGGCATTGGGGTTTCAACGATCGGGGGGCCGAAGGGGGGTGTGCGCACATGATGT
118 ACCTGATCGGCGGCATTAGGGTTTCGACGATCGGGGGGCCG--GGGGGGTGTGCGCACATGATGT
** * *
12451780 GTGATGGGTGCTGATACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCACGAGAACTCA
181 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCA
* * *
12451845 AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAA
246 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
12451910 TAGGTACACTTTTTTCAAATGATCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTT
311 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12451975 GTGCATGCCAAAAAAAATACAAGGATCATGA-CTACCAGGTCTGGGGCAAAAAATCCTTCCGAAA
376 GTGCATGCCAACAAAAATACAAGGATCA-CATCTACCAGGTCTAGGGCAAAAAATCCTTCCGAAA
*
12452039 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
440 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12452104 TTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
505 TTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGG
* **
12452169 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
570 CATCGAAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * **
12452234 TGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCCTGCCCGCCCGCCTGCCCGCACGCTCG
635 CGCATCCCGTCTCTCTGGCCG--G-AG-G--AG--CG-CT---CGCCCGCCCACCCGCACGCTCG
* *
12452299 TTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT
688 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT
* * ** * ** *
12452364 ACGACAGCAAGATCGGCAGTAGGCAGAG-GTGGACTCGGTCGATCCCCGACTTGCGCATTCTGCC
753 ACGACAGCAAGATCGACAGCACACAGAGAG-GGACCCGACCGATCCCCGACTTGCGCATCCTGCC
* * * * *
12452428 CCTCTGGTCGGA-TGAGCGCCTGCAGGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATT
817 CCTCTGG-CCGACTGAGCACCCGCACGCTCGTTTCATAGGTTCACTTAGGCATACGGAGTTCATT
12452492 CCAAGTCTAAC
881 CCAAGTCTAAC
*
12452503 CATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CGAGGGTTGCGGCAGCACATGCTGGGC
* *
12452568 TCGAGCATGTGCTGGTACCGCATTTTTCTTCGTCGGGGCATCATCGCCGGAGAACCTGATCGGCG
65 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCATCATCGCCGGAGAACCTGATCGGCG
* * *
12452633 GCATTAGGGTTTCGGCAATCGGGGTGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTACTG
130 GCATTAGGGTTTCGACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTG
* *
12452698 GTACTTGGCCCTTATATT-GCCCCCTATCCCACATCAAACCTCGAGAACTCACA-CCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
12452761 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
12452826 TTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATGTTTTTGGGCATTCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
12452891 AAAATACAAGGATCACATCTACCAGG-CTTAGGGCCAAAACT-CTTTCGAAAAAAATTTTAAAAA
389 AAAATACAAGGATCACATCTACCAGGTC-TAGGGCAAAAAATCCTTCCG-AAAAAATTTTAAAAA
* *
12452954 ATCTCGAACCGCT-AAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
452 ATCCCGAACCG-TAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
12453018 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATCGAAATGC
516 CTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATCGAAATGC
* *
12453083 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTC
581 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
12453148 TCTCTGGCCGGCGGAGCGCTCGCCCGCCCACCCGCCCGTTCTTTTCATCGGTTGGCTTAGGCATA
646 TCTCTGGCCGGAGGAGCGCTCGCCCGCCCACCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATA
* * *
12453213 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGCAGGATCGACAGCACA
711 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAAGATCGACAGCACA
**
12453278 CAGAGAGGGACCCGACCGATCTTCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCA
776 CAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCA
* * * *
12453343 CGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
841 CGCTCGTTTCATAGGTTCACTTAGGCATACGGAGTTCATTCCAAGTCTAAC
* * *
12453394 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
12453459 TTC-AGCTTGTGCTGGTGCCGTATTTTTCATCATCGGGGCACCATCGTCGGAGTATCACCGAAGA
65 -TCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCATCATCGCCGGAG-A--A-C-----
* * * * * * *
12453523 ATCTGATCGGTGGC-TTTGGGGTTCAGTCGATCGAGAGGGTC-GGGGGGTGTACGCACATGATGT
120 --CTGATCGGCGGCATTAGGGTTTC-GACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGT
*
12453586 GCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCTA-TATCCCTCATCAAACCTCGAGAACTC
181 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-ACTATCCCTCATCAAACCTCGAGAACTC
* * * **
12453650 ACACCCCCTTAAAGAACATTTGAGATTTTAGAGGTTTGTTGCCAGTAGCCAAGAAAGTGTCTGAA
245 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12453715 ATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
310 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12453780 TGTGCATGCCAACAAAAATAGAAAGATCACGTCTACCA
375 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCA
12453818 TAAAACTTCA
Statistics
Matches: 1168, Mismatches: 121, Indels: 66
0.86 0.09 0.05
Matches are distributed among these distances:
890 3 0.00
891 293 0.25
892 4 0.00
894 3 0.00
895 3 0.00
897 1 0.00
899 1 0.00
900 1 0.00
901 59 0.05
902 59 0.05
903 520 0.45
904 32 0.03
905 49 0.04
906 43 0.04
907 5 0.00
908 1 0.00
909 1 0.00
916 2 0.00
917 86 0.07
918 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACGAGGGTTGCGGCAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCATCATCGCCGGAGAACCTGATCGGCGG
CATTAGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACATCTACCAGGTCTAGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATCGAAATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGAGGAGCGCTCGCCCGCCCACCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAAGATCGACAGCACACAGAG
AGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTC
GTTTCATAGGTTCACTTAGGCATACGGAGTTCATTCCAAGTCTAAC
Found at i:12453403 original size:26 final size:26
Alignment explanation
Indices: 12453367--12453419 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12453357 GTTGACTTAG
12453367 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12453393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12453419 G
1 G
12453420 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12454198 original size:26 final size:26
Alignment explanation
Indices: 12454168--12454227 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
12454158 GTTGACTTAG
* *
12454168 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGACTTCATTCCCAATCTAA
* *
12454194 GCATACGGACTTCATTCTCAATCTAA
1 GCATACAGACTTCATTCCCAATCTAA
12454220 G-AT-CAGAC
1 GCATACAGAC
12454228 CGGATCGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 23 0.79
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAATCTAA
Found at i:12454560 original size:801 final size:802
Alignment explanation
Indices: 12453010--12454618 Score: 2430
Period size: 801 Copynumber: 2.0 Consensus size: 802
12453000 AGTCGTCTTG
* * *
12453010 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCAT
1 CCATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCAATAAAAATGGCAT
* * * *
12453075 CGAAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGC
66 CGAAACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
12453140 ATCCCGTCTCTCTGGCCGGCGGAGCGCTCGCCCGCCCACCCGCCCGTTCTTTTCATCGGTTGGCT
131 ATCCCGTCTCTCTGGCCGACGGAGCGCTCGCCCG--C-CCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * * *
12453205 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGCAGGATCG
193 TAAGCATACGAAGTTCATTACCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCG
* *
12453270 ACAGCACACAGAGAGGGACCCGACCGATCTTCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAG
258 ACAGCACACAGAGAGGGACCCGACCGATCCTAGACTTGCGCATCCTGCCCCTCTGGCCGACTGAG
* * *
12453335 CACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
323 CACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACG
* * * *
12453400 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTTCAGC
388 GACTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGATAGCACATGCTGGGCTTCAGC
* * * * *
12453465 TTGTGCTGGTGCCGTATTTTTCATCATCGGGGCACCATCGTCGGAGTATCACCGAAGAATCTGAT
453 TTGTGCTGGTGCCGCATTTTTCATCATCGAGGCACCATCGTCAGAGCATCACCGAAGAATCTGAC
* * * * *
12453530 CGGTGGCTTTGGGGTTCAGTCGATCGAGAGGGTCGGGGGGTGTACGCACATGATGTGCAATGGGT
518 CGGTGGCATTGGGGTTCAGGCGATCGAGAGGGCCAGGGGGTGTACGAACATGATGTGCAATGGGT
*
12453595 GCTAGTACTTGGCCCTTATATTGGCCCTATATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
583 GCTAGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12453660 AAAGAACATTTGAGATTTTAGAGGTTTGTTGCCAGTAGCCAAGAAAGTGTCTGAAATGGGGACTC
648 AAAGAACATTTAAGATTTTAGAGGTTTGCTGCCAGTAGCCAAGAAAGTGTCTGAAATGGGGACTC
*
12453725 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
713 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCC
12453790 AACAAAAATAGAAAGATCACGTCTA
778 AACAAAAATAGAAAGATCACGTCTA
*
12453815 CCATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
1 CCATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCAATAAAAATGGCAT
* ** *
12453880 TGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGC
66 CGAAACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
12453945 ATCCCGTCTCTCTGGCCGACGTAGTGCTTGTCCG-CCCGTCCGCTCGTTTCATCGGTTGGCTTAA
131 ATCCCGTCTCTCTGGCCGACGGAGCGCTCGCCCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAA
* * * ***
12454009 GCATACGAAGTTCATTACCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCAGGATCGGTG
196 GCATACGAAGTTCATTACCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
*** * * * * ** *
12454074 GCATGTAGAGGGGGACCCGATCGATCCTAGGCTTGTGCATCCTGCCCCTCTGGCCGGTTGAGCGC
261 GCACACAGAGAGGGACCCGACCGATCCTAGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCAC
* * *
12454139 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAATCTAAGCATACGGAC
326 CCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAC
* * *
12454204 TTCATTCTCAATCTAAGATCAGACCGGATCGAGGGTTACGATAGCACATGCTGGGC-TCTGGCTT
391 TTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGATAGCACATGCTGGGCTTC-AGCTT
* *
12454268 GTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCAGAGCATCACCGGAGAATCTGACCG
455 GTGCTGGTGCCGCATTTTTCATCATCGAGGCACCATCGTCAGAGCATCACCGAAGAATCTGACCG
* * *
12454333 GTGGCATTGGGGTTCAGGCGATCGGGGGGGCCAGGGGGTGTGCGAACATGATGTGCAATGGGTGC
520 GTGGCATTGGGGTTCAGGCGATCGAGAGGGCCAGGGGGTGTACGAACATGATGTGCAATGGGTGC
*
12454398 TGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
585 TAGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * **
12454463 ATAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACTCTT
650 AGAACATTTAAGATTTTAGAGGTTTGCTGCCAGTAGCCAAGAAAGTGTCTGAAATGGGGACTCTT
12454528 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAA
715 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAA
12454593 CAAAAATAGAAAGATCACGTCTA
780 CAAAAATAGAAAGATCACGTCTA
12454616 CCA
1 CCA
12454619 AGTTTGGGGC
Statistics
Matches: 721, Mismatches: 82, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
800 2 0.00
801 572 0.79
805 147 0.20
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (802 bp):
CCATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCAATAAAAATGGCAT
CGAAACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGGAGCGCTCGCCCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAA
GCATACGAAGTTCATTACCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
GCACACAGAGAGGGACCCGACCGATCCTAGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCAC
CCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAC
TTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGATAGCACATGCTGGGCTTCAGCTTG
TGCTGGTGCCGCATTTTTCATCATCGAGGCACCATCGTCAGAGCATCACCGAAGAATCTGACCGG
TGGCATTGGGGTTCAGGCGATCGAGAGGGCCAGGGGGTGTACGAACATGATGTGCAATGGGTGCT
AGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAACATTTAAGATTTTAGAGGTTTGCTGCCAGTAGCCAAGAAAGTGTCTGAAATGGGGACTCTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAAC
AAAAATAGAAAGATCACGTCTA
Found at i:12455096 original size:26 final size:26
Alignment explanation
Indices: 12455066--12455118 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12455056 GTTGACCTAG
*
12455066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12455092 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12455118 G
1 G
12455119 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12455779 original size:8 final size:8
Alignment explanation
Indices: 12455766--12455790 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
12455756 CTGGCGTAGT
12455766 GCCCGCTC
1 GCCCGCTC
12455774 GCCCGCTC
1 GCCCGCTC
12455782 GCCCGCTC
1 GCCCGCTC
12455790 G
1 G
12455791 TTTCATTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.60, G:0.28, T:0.12
Consensus pattern (8 bp):
GCCCGCTC
Found at i:12455998 original size:26 final size:26
Alignment explanation
Indices: 12455968--12456020 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12455958 GTTGACTTAG
12455968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12455994 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12456020 G
1 G
12456021 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12458670 original size:26 final size:26
Alignment explanation
Indices: 12458632--12458684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12458622 GTTAACTTAG
12458632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12458658 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12458684 G
1 G
12458685 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12459084 original size:900 final size:902
Alignment explanation
Indices: 12456859--12462044 Score: 6472
Period size: 900 Copynumber: 5.8 Consensus size: 902
12456849 GTTGACTTAG
* * * * * *
12456859 GCATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
12456924 CTCGAGCATGTGCTGGTG-CAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
12456988 AACCTGACCGGCAGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTATGTGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12457053 CGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12457118 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12457183 GGGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCTAGTTTTTGGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12457248 TCCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * * * *
12457313 ATTTTAAAAACTCCTGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATATAAAACGAGTCCTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12457378 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12457443 TTGGC-TCATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATTGATCCGCGGCTTGC
584 TTGGCAT-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
12457507 GCATCCCGCCTCTCTAGCCGACGTAGTGTCTGCTCG---G--C-C-C-CTCGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * * * * **
12457564 CTTAGGGATACGGAGTGCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTGTAGCAATAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGAT
* * * * ** *
12457629 CGGCAACACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCT
778 CCGCAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCT-GCCTGGCT
* * * *
12457693 GAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTACTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
12457754 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
12457819 CTTGGGCATGTGCTGGTGCCATATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
12457884 ACCTGATCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGACGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * * *
12457949 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCATATCCCTCATCAACCCTCAAGAACTTAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12458014 ACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCCGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12458079 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTAGACTTTGAGTTTTTACCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
12458144 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * * * *
12458209 ATTGTGAAATATCCCGAATCGCAAGAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
12458274 GCCATGGAACTTTACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12458339 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCATGGCTTGCG
584 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
12458404 CATCCCGTTTCACTGGCAAGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
* * * *
12458469 TTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTAGATCGAGGGTTGCTGCAGTAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATC
* * * * *
12458534 CGTAGCATGCAGACGGGGACCCGACCGATCCCTAGCTTGCGCATCCCACCCCTCTTCCTGGCTGA
779 CGCAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGCCTGGCTGA
* *
12458599 GCGCCCGCACGCTCGTTTCGTAGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
12458658 GCATACGGTGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * **
12458723 CTAGGGCATGTGCTGGTGTCACA-TTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCATAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGCCGGAGA
* *
12458787 ACCTAACCGGCGGCATTGGGGTTCCGACGATC-GGGGGCCGGGGGGTGTACGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
12458851 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAT
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12458916 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12458981 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTAGAGTTTTTAGCTGAATTTTTTTATG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
12459046 CAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * *
12459111 TTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTAC
456 TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
12459176 CATGAAACTTCACGTGAA-GCTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12459240 TAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGG
585 TGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** * *
12459305 GTCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCTACTCTCTCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCT
* * * *
12459370 TAGGCATACGGAGTTCATTCCCTA-TCTAAAATCAGA-TCGGACCGAGGGTTGCAGTAGCAAGAT
715 TAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACT-AGACCGAGGGTTGCAGCAGCAGGAT
* * * * *
12459433 CGGTCGCA-CAT--AGAGGGGGACCCGACCTATCCCCGGCTTGCACATCCAGCCCCTCTGGCTGG
778 C---CGCAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGCCTGG
* * * * * * *
12459495 TTGGGCGCCTGCATGCTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTAATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12459558 ACATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** * * *
12459623 CTCGAGCGTGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * *
12459688 ACCTGACTGGCGGCATTGGGGTTCCGGGGATCGGGGGGGCTGGGGGGAAGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG-TGTGCGCACATGATGTG
* *
12459753 CGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12459818 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12459883 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
12459948 TGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGATGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** * *
12460013 ATTTT----AATCTTGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
12460074 GCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCACAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12460139 TTGGCACACAGAAATATAAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGACTTGCG
584 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** * * * *
12460204 CATCCCATCTCTTTGGTCGGCGTAGTGCCCATCCGCCTGTCCGCCCGCTCGTTTCGTCAGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
* * * * * *
12460269 TTAAGCAAACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGGACCAAGGGTTGCAGCAGCAGGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCAGCAGCAGGAT
* * * * *
12460333 -TGACAGCATGGAGAGGGGGACCCGACCGAT-CCCAGGCTTGCGTATCCCGCCCCTCTGGCTGGT
778 CCG-CAGCATGCAGAGGGGGACCCGACCGATCCCCA-GCTTGCGCATCCCGCCCCTCTGCCTGGC
* *
12460396 TGAGCGCCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12460458 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
12460523 CTCGGGAATGTGCTGGTGCCGCATTTTT-TTCGCCAAGGCACAATCGTCTGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
12460587 ACCTAACCGACGGCATTAGGGTTTCGGCGATCGGGGGGACCGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
* *
12460652 GATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** *
12460717 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12460782 GGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAACTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * * *
12460847 GCATGCCAACAAAAATACAAGGATCTCATCTACCAAGTTTGGGGATAAAAATCCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * * *
12460912 TTTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12460977 CCATGAAACTTCATGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
12461042 TGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TGGCATA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12461106 CATCCCATGTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC-CCCGTTCGTTTCGTCGATTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
*
12461170 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTT-----A-C--GA-C
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATC
* * * * *
12461226 AGCA-CAT--ACAGGGGGACCCGATCGAT-CCGA-CTTGCGCATCCCGCCCCTCTGGCC-GGCTA
779 CGCAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCT-GCCTGGCTG
* * * **
12461285 AGCACACGCATGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12461345 G-AT-C--AG---A----C---C--AGAT-----C-G---G-GGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
12461384 CTCGGGCATGTGCTAGTGCCATATTTTTCTTCACCAAGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * *
12461449 ACCTGATCGGCGGCATTGGGGTTCCG--G-T-----GATCGGGGGGTGTGCGCACATAATGTGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
12461506 ATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12461571 CCTCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12461636 GGACAC-TTTTTCAAATGGACACAAAA-----T---C-TC--G----T---TG-A---------G
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
12461672 ---GCCAAAAAAATATACAAGGATCAAGTCTACTAAGTTTGAGGCCAAAACTCCTTCCAAAAAAA
391 CATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
12461734 TTTTAAAAAATCTCGAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12461799 CCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
12461864 TGGCGCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGC
585 TGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12461929 ATCCCGTCTCTTTGGCCGGCGTAGTGCCCGTCCTCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCT
* * *
12461994 TAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTG
12462045 TGGCAGCACA
Statistics
Matches: 3771, Mismatches: 476, Indels: 159
0.86 0.11 0.04
Matches are distributed among these distances:
821 9 0.00
822 258 0.07
823 65 0.02
824 1 0.00
833 1 0.00
834 2 0.00
837 1 0.00
841 1 0.00
843 1 0.00
844 1 0.00
847 1 0.00
852 18 0.00
853 148 0.04
854 1 0.00
859 1 0.00
860 1 0.00
861 46 0.01
862 52 0.01
865 1 0.00
871 4 0.00
873 1 0.00
876 1 0.00
880 1 0.00
883 2 0.00
885 1 0.00
886 2 0.00
887 76 0.02
888 2 0.00
889 20 0.01
891 3 0.00
892 2 0.00
893 3 0.00
895 146 0.04
896 455 0.12
897 3 0.00
898 266 0.07
899 67 0.02
900 1168 0.31
901 136 0.04
902 208 0.06
903 83 0.02
904 512 0.14
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCCG
CAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGCCTGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12460468 original size:26 final size:26
Alignment explanation
Indices: 12460432--12460484 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12460422 GTTGACTTAG
12460432 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12460458 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12460484 G
1 G
12460485 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12467000 original size:10 final size:10
Alignment explanation
Indices: 12466985--12467012 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
12466975 TTGAAAGTAG
12466985 GAAGCTGAGC
1 GAAGCTGAGC
12466995 GAAGCTGAGC
1 GAAGCTGAGC
12467005 GAAGCTGA
1 GAAGCTGA
12467013 AAGGAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.39, T:0.11
Consensus pattern (10 bp):
GAAGCTGAGC
Found at i:12470315 original size:26 final size:26
Alignment explanation
Indices: 12470285--12470335 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12470275 TTGACTTAGG
*
12470285 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAATCTAAC
*
12470311 CATACGGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATTCCCAATCTAA
12470336 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAC
Found at i:12471582 original size:708 final size:709
Alignment explanation
Indices: 12470311--12471665 Score: 1993
Period size: 708 Copynumber: 1.9 Consensus size: 709
12470301 CCAGTCTAAC
* * * *
12470311 CATACGGAGTTCATTCCCAATCTAAGATCGGACCAGATCGAGATTTATGATAGCACATACTGGGC
1 CATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGAGTTACGATAGCACATACTGGGC
* ** * *
12470376 TCGGGAAAGTTTTGGTGCTGTATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCAGAGAA
66 TCGAGAAAGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCAGAGAA
* * * ** * *
12470441 CTTGACTGGCAACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTACGCACAAGATGTGT
131 CCTGACCGACAACATCAGGGTTCCGACGATCAGGGGGCC-GGGGGGGTGTACGCACAAGATGTGC
* * *
12470506 GATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
12470571 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
12470636 GGGACACCTTTTTCAAATAGCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATGTTTTTGTG
325 GGGACACCTTTTTCAAATAGCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATGTTTTTGTG
* * * * * *
12470701 CGTGCCAAAAAAAATACAAGGATCATGTCTACGATGTTTGGGGCCAAAACTCCATCCGAAAAAAT
390 CATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAAATCCATCCGAAAAAAA
* * * *
12470766 TTTAAAAAATTTCAAACCGTAAAAAGGATCCGAAATCGTGAAAAATAAAAAATGAGTCGTCTTGC
455 TTTAAAAAATCTCAAACCGCAAAAAGGATCCAAAATCGTGAAAAATAAAAAAGGAGTCGTCTTGC
12470831 CATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
12470896 GGCACGTAGAAATATGAAGATATACCTAAACCCACCTACCATCC-TATCCATCCACGACTTGCAT
585 GGCACGTAGAAATATAAAGATATACCTAAACCCACCTACCA-CCGTATCCATCCACGACTTGCAT
12470960 ATACTGTCTCTCTGGCCGGCATAGTGCCCGCCCGCTCGCTCCTTTCGTCGGTTGGCTTAGG
649 ATACTGTCTCTCTGGCCGGCATAGTGCCCGCCCGCTCGCTCCTTTCGTCGGTTGGCTTAGG
* * * * * *
12471021 CATACGGAGTTCATTCCCAGTCTAAGATCTGACC-GAACCAAGGGTTGCGGTAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAATCTAAGATCGGACCAG-ACCAAGAGTTACGATAGCACATACTGGG
* * *** * * *
12471085 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACTATCGTCGGAGCATCGCCGGAGA
65 CTCGAGAAAGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCAGAGA
** * *
12471150 ACCTGACCGACGGCATCAGGGTTCCGACGATCAGGGGGCC-GGGGGGTGT-GGCACATGATGTGC
130 ACCTGACCGACAACATCAGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTACGCACAAGATGTGC
12471213 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
12471278 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
* * * *
12471343 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGT
325 GGGACACCTTTTTCAAATAG-CACAAAATCTTGTACACTTCGAGTTTTTACCTGAATGTTTTTGT
* *** *
12471408 GCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAAATTGTTTCGAAAAAA
389 GCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAAATCCATCCGAAAAAA
* ** * *
12471473 ATTTAAAAAATC-CTGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAGTCTTCTT
454 ATTTAAAAAATCTC-AAACCGCAAAAAGGATCCAAAATCGTGAAAAATAAAAAAGGAGTCGTCTT
*
12471537 GCCATGAAACTTCACGTGATGGCTTCA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 GCCATGAAACTTCACGTGAAGGCTT-AGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12471601 ATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGACTTGC
582 ATTGGCACGTAGAAATATAAAGATATACCTAAACCCACCTACCACCGTATCCATCCACGACTTGC
12471666 GCATCCCATC
Statistics
Matches: 571, Mismatches: 69, Indels: 12
0.88 0.11 0.02
Matches are distributed among these distances:
707 156 0.27
708 277 0.49
709 2 0.00
710 136 0.24
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (709 bp):
CATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGAGTTACGATAGCACATACTGGGC
TCGAGAAAGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCAGAGAA
CCTGACCGACAACATCAGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTACGCACAAGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
GGACACCTTTTTCAAATAGCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATGTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAAATCCATCCGAAAAAAAT
TTAAAAAATCTCAAACCGCAAAAAGGATCCAAAATCGTGAAAAATAAAAAAGGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGTAGAAATATAAAGATATACCTAAACCCACCTACCACCGTATCCATCCACGACTTGCATAT
ACTGTCTCTCTGGCCGGCATAGTGCCCGCCCGCTCGCTCCTTTCGTCGGTTGGCTTAGG
Found at i:12471931 original size:26 final size:26
Alignment explanation
Indices: 12471895--12471947 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12471885 GTTGACTTAG
*
12471895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12471921 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12471947 G
1 G
12471948 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12473541 original size:26 final size:26
Alignment explanation
Indices: 12473505--12473557 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12473495 GTTGACTTAG
*
12473505 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12473531 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12473557 G
1 G
12473558 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12474433 original size:26 final size:26
Alignment explanation
Indices: 12474397--12474449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12474387 GTTGACTTAG
*
12474397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12474423 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12474449 G
1 G
12474450 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12475295 original size:26 final size:26
Alignment explanation
Indices: 12475265--12475317 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12475255 GTTGACTTAG
*
12475265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12475291 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12475317 G
1 G
12475318 ATCGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12476198 original size:26 final size:26
Alignment explanation
Indices: 12476168--12476217 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12476158 TTGAGTTAGG
*
12476168 CATACGGAGTTCATTCCTAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
12476194 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
12476218 TGATCAGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:12476440 original size:902 final size:889
Alignment explanation
Indices: 12472628--12479657 Score: 8685
Period size: 902 Copynumber: 7.9 Consensus size: 889
12472618 GTTGGCTTAG
* * * *
12472628 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGAACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12472693 ATCGAGCATGTGCTGGTGCCCCATTTTTCTTCGTTGGGGCACTATCGTCGGAGCATCGTTGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
12472758 ACCTGACCGACGGCATCGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTG-GCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* **
12472822 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
12472887 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12472952 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * ** *
12473017 TGCATGCCAGCAAAAATACAAGGATCACGTCTACCATGTTTGGGACTAAAAATTGTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** * *
12473082 AATTTAAAAAATCCTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAGTCTTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
12473147 GCCATGAAACTTCACGTGATGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
12473212 TTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCATCGTATCGATCCACGACTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
12473277 CATCCCATCTTTCTGGCCGACGTAATGCCCGCCTGCCCACCCGCCCATTCGTTTCTTTGGTTGGC
649 CATCCCGTCTCTCTGGCGGA-GT-A-----G--TGCCCGCCCGCCC-GT--TTTCGTCGGTTGGC
* ** ** * * * **
12473342 TTAGGCATACGGAGTTCATTCCCAGCCTAATTTTGGACCGGAGCAAGGGTTGAAGCAGCAGGATC
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * **
12473407 GGCAGCACACAGAGAGGGACCCGACCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
767 GGCAGCACGCAGAGGGGGACCAG-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
12473472 ACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
12473531 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAACAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * * *
12473596 CTCGGGCATGTGCTGGTGATGCATTTTTTTTCGTCGGGGCACCATCACCGGTGCAACGTCAGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
12473661 ACTTGACCCGAGGCATTGGGGTTCC-AGCGATTGGGGGGGCCGGGGGGGTGTGTGCGCACATGAT
130 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATTGGGGGGGCC--GGGGG-GTGTGCGCACATGAT
* * *
12473725 GTGCGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * *
12473790 CACACCCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * * *
12473855 AATGGGAACACTTTTGTCAAATGGTCAAAAAATCTTGTAAACTTCAAGTTTTCT--CTTGAATTG
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGC-TGAATTT
* *
12473918 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGGCC-AAACTCCTTCC
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCC
* * * *
12473982 AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGGTTTGAAAATCATGAAAAATAGAAAACGAGT
448 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
** *
12474047 TATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
12474112 ATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGG
578 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** *
12474177 CTTGCGCATCCCGTCTCTCTGGCTAGCGTAGTGCCCGCCCGCTTG-TTTCGTCAGTTGGCTTAGG
643 CTTGCGCATCCCGTCTCTCTGGC-GGAGTAGTGCCCGCCCGCCCGTTTTCGTCGGTTGGCTTAGG
* * * * * *
12474241 CATACAGAGTTAATT-CCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATTGACAG
707 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * *
12474305 CACGTAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCACTCTGGCCGGCTGAGCACC
772 CACGCAGAGGGGGACCAG-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
12474370 TGCACGCTGGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12474423 GCATAAGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCAGG-AGCACATACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGACCGAGGGTTGC-GGCAGCACATGCTGG
* ** *
12474487 GTTCGAGCATGTGCTGGTGTTGCATTTTTC-T--T-----CA-C-T-GT-GGCACCATCGTCGGA
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG-AGCATCGTCGGA
* * * *** *
12474540 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGTTTC---GGG-GAG-G----T-A--T
128 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * **
12474593 GCGATGGGTGCTGGTACTTGACCCTTATACTGGCCCCCTATCCCTCATCAAAATTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* ** *
12474658 CACCCCCTTTAAGAGCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCCACTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12474723 TGGGGATACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * *
12474788 GTGCATGCCAGCAAAAATACAAGGATCACGTCTTAAAAAGTTTGGAGCCAAAACGCCTTTCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
12474853 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACAAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
12474918 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
12474983 CATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTTTCGATCAACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12475048 CGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCTCG-TTTAGTGGGTTGGCTTAGGCATA
647 CGCATCCCGTCTCTCTGGCGGA-GTAGTGCCCGCCCGCCCGTTTTCGTCGGTTGGCTTAGGCATA
* * ** * *
12475112 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAAGAT-GACAGCACG
711 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * * * **
12475176 TAGAGGGGGACTCGGCCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGTGCTAGCA
776 CAGAGGGGGAC-CAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
12475241 CGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** * *
12475291 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGATGGGACTAAGGGTTGCGATAGCACATGTTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12475356 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * ** * * * *
12475421 ACCTGACCGGCGGAATTAGCGTTCCGGTGATCGGGGGGGCCAGCGGGTGTGTGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
12475486 GATGGGTGCTGGTACTCGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAAAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
12475551 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12475616 GGGACATTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
12475681 GCATGCCAAAAAAAATACGAGGATCACGTCTTA-AAAGTTTAGGGCCAAAACGCCTTCCGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* **
12475745 ATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12475810 GACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
12475875 TTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTGCGACCCTATCGATCAACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12475940 CATCCCATCTCTCTGGCAGGAGTAGTGCCAGCCCGCCCGCCGCCCGCTCTTGTCATCGGTTGGCT
649 CATCCCGTCTCTCTGGC-GGAGTAGT----GCCCG--C-CCGCCCG-T-TT-TCGTCGGTTGGCT
* * * * * * * *
12476005 TAGGTATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAAGGTTGCAGTAGTAGGATTG
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * *
12476070 GCAGCACGCAAAGGGGGATCCAGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAG
768 GCAGCACGCAGAGGGGGA-CCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * * *
12476135 CGCCCGCACATTCGTTTCATGGTTTGAGTTAGGCATACGGAGTTCATTCCTAGTCTAA
832 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12476193 TCATACGGAGTTCATTCCCAGTCTATGATCAGACTAGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
12476258 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * * * **
12476323 ACCTGACCGGCAGCATTGGGGTTTTGATGATTAGGGGTGCTAGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
12476388 GATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCTTATCGCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * * *
12476453 CCCCCTTAGAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12476518 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
12476583 GCACGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGAGCCAAAACTCCTTCC-AGAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAAA
* * ** ** * *
12476647 ATTTAAAAAAATCCTGAACCTTAAAAAGTTTTGCAAATCGTGAAAAATAAAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
**
12476712 GCCATGAAACTTCACGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12476777 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12476842 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCGGCTC-ATTTGGTCGGTTGGCTTAGGCATACG
649 CATCCCGTCTCTCTGG-CGGAGTAGTGCCCGCCCGCCCGTTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
12476906 GAGTTTATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGTAGGATCGGCAGCACACG
713 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * **
12476971 GAGGGGGACCCAACCGATCCCCTGCTTGCGCATCCCGCCCCTTTGGCCGGTTGAGAACCCGCACG
778 GAGGGGGA-CCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
**
12477036 CTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12477084 G-AT-C-G-G---------A-TC---G----GAT-GA---AGGGTTGCGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* **
12477124 TCGAGCATGTGCCGGT-CCTATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 TCGAGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
12477188 ACCTGACCTGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12477253 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
12477318 CCTCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
260 CC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12477382 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12477447 TGCATGCCAATAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** * * *
12477511 ATTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGCCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
12477576 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
12477641 TTAGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCA
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12477706 CATCTCGTCTCTCTGGCCGAAGTAGTACCCGCTCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
649 CATCCCGTCTCTCTGG-CGGAGTAGTGCCCGCCCGCCCG-T--TTTCGTCGGTTGGCTTAGGCAT
* * *
12477771 ACGTAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
710 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * *
12477836 G--TAGGGGGACCCAGCCGATCCCCAGCTTGAGGATCCGGCCCCTCTGGCCGACTGAGCGCCCGC
775 GCAGAGGGGGA-CCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
12477899 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
12477950 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
12478015 CTCCGA-CATGTGCTGGTGCCGCATTTTTCTTC-CCTGGGGCACCATCATCGAAGCATCGCTGGA
65 CT-CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCA-C--CATC---G--T--C-GGA
* * * * * *
12478078 GCATCGCCGGAGAACCTTACAGGTGGCATTAGGGTTCC-AGCGA-TCGGGGGGCCGGGGGGTGTG
117 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATTGGGGGGGCCGGGGGGTGTG
* * * *
12478141 CGCACATGTTGTGCGATGGGTGCTGGTACTCGGCCCTTTTATTGGCCCCCTATCCCTCGTCAAAC
181 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
12478206 CTCT-AGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
246 CT-TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
12478270 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTA
310 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
12478335 GCTAAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
375 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * *
12478400 CTCCTTCCGAAAAAATTATT-AAAAAT-CTGAACCGCACAAAGTTTCAAAAATCATGAAAAATAC
440 CTCCTTCCGAAAAAATT-TTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAG
12478463 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
504 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
12478528 GCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
569 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
12478593 GATCCATGGCTTGCGCTTCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCG-TTTCGTCGGT
634 GATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGAGTAGTGCCCGCCCGCCCGTTTTCGTCGGT
* * * ** * * ** * * *
12478657 TGGCCTAGGCATACGGAATTCATTCCCAATCTAAGATTGGACCAGATTGAGGGTTACGGTAGTAG
698 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAG
** * * * * *
12478722 GATCGATAGCATGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGG
763 GATCGGCAGCACGCAGAGGGGGACC-AGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGG
12478787 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
827 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
12478850 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTCACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12478915 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCAGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** * *
12478980 ACCTAACCGACGGCATTGGGGTTCCGGTGA-TCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12479044 GATGGGTGCTGGTACTTGGCCCTTAAATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTC-CT
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC-
* * * * *
12479108 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTGAAGTGTTTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12479173 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGGTTTTT-GCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
* * *
12479237 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
12479302 AATTTTAAAAAATCTCAAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAATCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
12479367 TGCCATAAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAAT-GC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
12479431 ATTGGCATGCCGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12479496 GCATCCCGTCTATCTGGCCGTCGAAGTGCCCGTCCGTCCACCCGCCCGCTTGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGG-CG--G-AGT---AGT--GCCCGCCCGCCCG--T-TTTCGTCGGTTGG
* *
12479561 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGGCAGCAGGAT
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGAT
* **
12479626 CGGCTGCACATAGAGGGGGACCCAGCCGATCC
766 CGGCAGCACGCAGAGGGGGA-CCAGCCGATCC
12479658 TTGGCTAGCG
Statistics
Matches: 5318, Mismatches: 666, Indels: 288
0.85 0.11 0.05
Matches are distributed among these distances:
864 212 0.04
865 368 0.07
866 310 0.06
867 341 0.06
868 238 0.04
869 4 0.00
870 3 0.00
871 1 0.00
873 1 0.00
874 3 0.00
875 1 0.00
876 4 0.00
877 3 0.00
878 2 0.00
879 45 0.01
880 6 0.00
881 40 0.01
882 5 0.00
883 4 0.00
884 3 0.00
887 3 0.00
888 6 0.00
889 393 0.07
890 348 0.07
891 386 0.07
892 171 0.03
893 109 0.02
894 35 0.01
895 10 0.00
896 2 0.00
897 20 0.00
898 87 0.02
899 4 0.00
900 195 0.04
901 157 0.03
902 1160 0.22
903 191 0.04
904 7 0.00
905 7 0.00
906 427 0.08
907 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCGGAGTAGTGCCCGCCCGCCCGTTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
GGGGACCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12477960 original size:26 final size:26
Alignment explanation
Indices: 12477924--12477976 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12477914 GTTGACTTAG
12477924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12477950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12477976 G
1 G
12477977 ATCTGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12478860 original size:26 final size:26
Alignment explanation
Indices: 12478824--12478876 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12478814 GTTGACTTAG
12478824 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12478850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12478876 G
1 G
12478877 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12479842 original size:171 final size:171
Alignment explanation
Indices: 12479536--12479857 Score: 423
Period size: 171 Copynumber: 1.9 Consensus size: 171
12479526 CGTCCGTCCA
* * *
12479536 CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCGGACC
** * *
12479601 GGACCGAGGGTTGGGGCAGCAGGATCGGCTGCACATAGAGGGGGACCCAGCCGATCCTTGGCTAG
66 AAACCGAGGGTTGGGGCAGCAGGATCGGCTGCACAGAGAGGGGGACCCAGCCGATCCTCGGCTAG
* *
12479666 CGCATCCCATCTCTCTGGTCGACGTAGTGATCGCCCGCCCG
131 CGCATCCCACCCCTCTGGTCGACGTAGTGATCGCCCGCCCG
* * * *
12479707 CCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACTGAGTTCATTCACAGTCTAAGATTGGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCGGACC
* * * * * * **
12479772 AAACTGAGGGTTGTGGCAGCAGGATCGG-TAGCACGGAGAGTGGGACTCGGTTGATCCTCGGCCT
66 AAACCGAGGGTTGGGGCAGCAGGATCGGCT-GCACAGAGAGGGGGACCCAGCCGATCCTCGG-CT
12479836 -GCGCATCCCACCCCTCTGGTCG
129 AGCGCATCCCACCCCTCTGGTCG
12479858 GTTGAGCGCC
Statistics
Matches: 128, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
170 1 0.01
171 125 0.98
172 2 0.02
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (171 bp):
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCGGACC
AAACCGAGGGTTGGGGCAGCAGGATCGGCTGCACAGAGAGGGGGACCCAGCCGATCCTCGGCTAG
CGCATCCCACCCCTCTGGTCGACGTAGTGATCGCCCGCCCG
Found at i:12481997 original size:171 final size:171
Alignment explanation
Indices: 12481678--12482007 Score: 408
Period size: 171 Copynumber: 1.9 Consensus size: 171
12481668 GAGTGCCCGC
* *
12481678 CCGCCCGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
1 CCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
* * ** *
12481743 AAGATCAGATCGGACCGAGGGTTGGGGCAGCAGGATCAGCAGCACGTAGAGGGGGACACGGCCGA
66 AAGATCAGACCAGACCGAGGGTTGGGGCAGCAGGATCAGCAGCACAAAGAGGGGGACACAGCCGA
** * *
12481808 TCCTTGGCTAGCGCATCCCATCTCTCTGGTCGACGTAGTGA
131 TCCCCGGCTAGCGCATCCCACCCCTCTGGTCGACGTAGTGA
* * * * **
12481849 CCGCCCGCCCGTCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATGCAGAGTTCATTCGTAGTCT
1 CCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
** * * * * * **
12481914 AAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCATAAAGAGTGGGACCCAGTTGA
66 AAGATCAGACCAGACCGAGGGTTGGGGCAGCAGGATCAGCAGCACAAAGAGGGGGACACAGCCGA
* *
12481979 TCCCCGGCTTGTGCATCCCACCCCTCTGG
131 TCCCCGGCTAGCGCATCCCACCCCTCTGG
12482008 CTGGCTGAGC
Statistics
Matches: 131, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
171 131 1.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.22
Consensus pattern (171 bp):
CCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
AAGATCAGACCAGACCGAGGGTTGGGGCAGCAGGATCAGCAGCACAAAGAGGGGGACACAGCCGA
TCCCCGGCTAGCGCATCCCACCCCTCTGGTCGACGTAGTGA
Found at i:12482892 original size:26 final size:26
Alignment explanation
Indices: 12482856--12482934 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
12482846 GTTGACTTAG
12482856 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12482882 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12482908 GCATACGGAGTTCATTTCCAA-TCTAA
1 GCATACGGAGTTCA-TTCCAAGTCTAA
12482934 G
1 G
12482935 ATCAGACAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 46 0.88
27 6 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12485235 original size:714 final size:711
Alignment explanation
Indices: 12483820--12485287 Score: 2156
Period size: 714 Copynumber: 2.1 Consensus size: 711
12483810 AAGCAGACGT
* **
12483820 AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* * *
12483885 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACAATCATCGGAGCATCGGAGAAACTTGACCGA
66 TGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACAATCACCGGAGCATCGCAGAAACTTGACCGA
* * * * *
12483950 CGGCATTGGGGTTTCGACGATCGGGGGGGCCAAGGGGGGTGGTCGCAAATGGTGTGTGATGCATG
131 CGGCATTGGGGTTCCGACGATCCGGGGGGCC-AGGGGAGTGGTCGCAAATGATGTGCGATGCATG
12484015 CTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACATCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACATCCCCTTA
* * *
12484080 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGATATGAAGACACT
260 AAGAGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGAAGACACT
**
12484145 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCA
* * *
12484210 AAAAAAATCCAAGGATCACGTCTACAAAGTTTGGGACCAAAACTCCTTTCAAAAAAATATTAAAA
390 AAAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAAATCCTTCCAAAAAAATATTAAAA
* * *
12484275 AATCCCGAACCGTAAAAGGTTTCAAAAATCGTGACAAATAGAAAACGAGTCGTCTTGCCATAAAA
455 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAA
* * *
12484340 CTTCATGTGAAGGCTTAAGGGCCATTATATGAATTTACAAGCCATAAAAATGTCATTGGGACATA
520 CTTCACGTGAAGGCTTAAGGGCCATTATATGAATTTACAAGCCATAAAAATGGCATT-GCACATA
12484405 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * *
12484470 CTCAGGCAGGCATAGTGCCCGCCCGCTCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGG
649 CTCAGGCAGACATAGAGCCCGCCCGCCCGCCCGCTCAGTTCGTCAGTTGGCTTAGGCATACAG
*
12484533 AGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* * *
12484598 TGTGCTGGTGCCATATTTTTCTTTG-CTGGGGCACCATCACCGGAGCATCATCAGAGAACTTGAC
66 TGTGCTGGTGCCATATTTTTCTTCGTC-GGGGCACAATCACCGGAGCATC-GCAGA-AACTTGAC
* * * * *
12484662 CGGCGGGATTGGGGTTCCGATGATCCGGGGGGCC-GGGGCAGT-GTGCGCACATGATGTGCGTTG
128 CGACGGCATTGGGGTTCCGACGATCCGGGGGGCCAGGGG-AGTGGT-CGCAAATGATGTGCGATG
** **
12484725 GGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACA-CCC
191 CATGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACATCCC
* * **
12484789 CGTTAAAGAGTATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
256 C-TTAAAGAGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGAAG
* *
12484854 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTACCTGATTTTTTTTGTGCA
320 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCA
* * * *
12484919 TGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
385 TGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAAATCCTTCCAAAAAAATAT
* **
12484984 TAAAAAATCCTGAACCGCAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
450 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
12485049 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-C
515 TAAAACTTCACGTGAAGGCTTAAGGG-CCATTATATGAATTTACAAGCCATAAAAATGGCATTGC
* *
12485113 ACATGCAGCAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCAT
579 ACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
12485178 CCCGTCTCTCTGGCCGACGTAGAGCTCGCTCGCCCGCCCGCTC-GTTCGTCAGTTGGCTTAGGCA
642 CCCGTCTCTCAGGCAGACATAGAGCCCGCCCGCCCGCCCGCTCAGTTCGTCAGTTGGCTTAGGCA
12485242 TACAG
707 TACAG
* ** *
12485247 AGTTAATTCCCAGTCTAAGATTAGACCGGACAGAGGGTTGC
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGC
12485288 GGTAGTAGGA
Statistics
Matches: 674, Mismatches: 72, Indels: 17
0.88 0.09 0.02
Matches are distributed among these distances:
712 1 0.00
713 118 0.18
714 393 0.58
715 162 0.24
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACAATCACCGGAGCATCGCAGAAACTTGACCGA
CGGCATTGGGGTTCCGACGATCCGGGGGGCCAGGGGAGTGGTCGCAAATGATGTGCGATGCATGC
TGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAA
AGAGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGAAGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAAATCCTTCCAAAAAAATATTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAAC
TTCACGTGAAGGCTTAAGGGCCATTATATGAATTTACAAGCCATAAAAATGGCATTGCACATAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CAGGCAGACATAGAGCCCGCCCGCCCGCCCGCTCAGTTCGTCAGTTGGCTTAGGCATACAG
Found at i:12487097 original size:26 final size:26
Alignment explanation
Indices: 12487066--12487121 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12487056 TTGGTTGACT
*
12487066 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12487092 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12487118 TAAG
1 TAAG
12487122 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12490660 original size:26 final size:26
Alignment explanation
Indices: 12490631--12490683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12490621 GTTGACTTAG
*
12490631 GCATATAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* *
12490657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
12490683 G
1 G
12490684 ATAGGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:12491569 original size:26 final size:26
Alignment explanation
Indices: 12491530--12491582 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12491520 GTTGACTTAG
*
12491530 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
12491556 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
12491582 G
1 G
12491583 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:12492458 original size:25 final size:26
Alignment explanation
Indices: 12492425--12492474 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
12492415 TGACTTAGGG
12492425 ATACAGAGTTCATTCCCAG-CTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
12492450 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12492475 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:12493080 original size:901 final size:899
Alignment explanation
Indices: 12486489--12498766 Score: 15750
Period size: 890 Copynumber: 13.7 Consensus size: 899
12486479 GATGGGTGCT
* *
12486489 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAAAGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
12486554 CTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGTCAACAAAAATACAAGGATCACGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * * * *
12486619 TTACCAAGTTTGGGGCCAAAAATCC-CCCTTAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
**
12486683 TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
195 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
12486748 GACCATTGTATTAATTTACAAGCCATAAAAATTGCATTGGCACGCAGAAATATGAAGATGTGCCT
260 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* *
12486813 AAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC-
325 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCG
*
12486877 CCG-CC-C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGAT
390 CCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
12486939 CAGACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGTAGAGGGGGACTCGGCTGATCCCC
455 CAGA-CAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCC
* * * * * * *
12487004 GGCTTGCGCATCCTGCCCCTCTGGCTGGTTGAGCACCCGCACACTCGTTTCATTGGTTGACTTAA
519 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12487069 GCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
584 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
*
12487134 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
649 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* *
12487199 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
714 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* ** *
12487264 CCGGGGGGGTGTGCGCACATGATGTGCGAGGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTC
779 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
12487329 TCCCTCATCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACA
844 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
12487385 GGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGGGGACACTTTTTTGAAAAGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
12487450 CTTGTACATTTCGAGTTTTTTGCTGAATTTTTTTGTGCGTGCCAACAAAAATACAAGGATCATGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * *
12487515 CAACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
*
12487580 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGG
196 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
12487645 ACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
261 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
12487710 AACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCAGTCTCTCTAGCCGGA-GTAGT---
326 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCG
* * *
12487771 --G-CC-C-GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTATGAT
390 CCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** ** * * * * *
12487831 -TGAAATGGATTGAGGGTTGCAGCAGTAGGATTGGCAGCATGCAGAAGGGGACCCGGCCGATCCC
455 CAGACA--GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCC
* * *
12487895 CGGCTTGCGCATCCCGCCACTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTA
518 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
12487960 GGCATATAGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGA
583 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * ***
12488025 CCGAGGGTTGCGGTAGCACATGATGGGCTCGAGCATGTGCTGATGCCACATTTTTCTTCGTTGGG
648 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
* *
12488090 GCACCATCGTCGGAGCATCGCCGGAGAACCCGACTGGCGGCATTGGGGTTCCGACGATCGGGGGG
713 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
**
12488155 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCT
778 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
12488219 ATCCCTCATCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTTG-GATTTTACA
843 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
12488275 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAAAGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
12488340 CTTGTACATTTCGAGTTTTTTGCTGAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATCATGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * *
12488405 CAACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
*
12488470 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGG
196 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
12488535 ACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
261 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* *
12488600 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTAGCCGGA-GTAGT---
326 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCG
* *
12488661 --G-CC-C-GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGAT
390 CCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** ** * * * * *
12488721 -TGAAATGGATTGAGGGTTGCAGCAGTAGGATTGGCAGCATGCAGAAGGGGACCCGGCCGATCCC
455 CAGACA--GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCC
* * *
12488785 CGGCTTGCGCATCCCGCCACTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTA
518 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
12488850 GGCATATAGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGA
583 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * ***
12488915 CCGAGGGTTGCGGTAGCACATGATGGGCTCGAGCATGTGCTGATGCCACATTTTTCTTCGTTGGG
648 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
* * *
12488980 GCACCATCGTCGGAGCATCGCCGGAGAACCCGACTGGCGGCATTGGGGTTCCGACGGTCGGGGGG
713 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* **
12489045 GCC-GAGGGGTGTGCGCACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCT
778 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
12489109 ATCCCTCATCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTTG-GATTTTACA
843 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
12489165 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAAAGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
12489230 CTTGTACATTTCGAGTTTTTTGCTGAATTTTTTTGTGCGTGCCAACAAAAATACAAGGATCATGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * *
12489295 CAACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* * *
12489360 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACATGACGTGAAGGCTTAAGGG
196 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
12489425 ACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
261 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* *
12489490 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTAGCCGGA-GTAGT---
326 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCG
* * *
12489551 --G-CC-C-GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGAT
390 CCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * ** * * * * *
12489611 -TGAAATGGATTGAAGGTTGCAGCAGTAGGATTGGCAGCATGCAGAAGGGGACCCGGCCGATCCC
455 CAGACA--GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCC
* * *
12489675 CGGCTTGCGCATCCCGCCACTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTA
518 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
12489740 GGCATATAGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGA
583 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * ***
12489805 CCGAGGGTTGCGGTAGCACATGATGGGCTCGAGCATGTGCTGATGCCACATTTTTCTTCGTTGGG
648 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
* * *
12489870 GCACCATCGTCGGAGCATCGCCGGAGAACCCGACTGGCGGCATTGGGGTTCCGACGGTCGGGGGG
713 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* **
12489935 GCC-GAGGGGTGTGCGCACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCT
778 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
12489999 ATCCCTCATCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTTG-GATTTTACA
843 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
12490055 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTGAAAAGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
** *
12490120 CTTGTACACTTCGAGTTTTTTCCTGAATTTTTTTGTGCCTGCCAACAAAAATACAAGGATCATGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * * * *
12490185 CTACTAAGTTTGGGACCAAAACTCATTTCGAAAAAATTTTTAAAAATCCCGAACCGCAAAAATTT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* ** * * *
12490250 TTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACATGACGTGAAGGCTTAAGGG
196 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* **
12490315 ACCATTGTATGAATTTACAAGCTATAAAAATCACATTGGCATGCAGAAATATGAAGATGTGCCTA
261 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
** * *
12490380 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTTTGGCCGGCGTAGTGC-C
326 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGC
* * *
12490444 CG--C-C-G---GCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTAATTCCCAGTCTAAGATC
391 CGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
12490502 AGAACAGACCGAAGGTTGTGGCAGTAGGATCGGCTGCATGCAGAGGGGGACTCGGCTGACCCCCA
456 AG-ACAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCG
* * * * * * *
12490567 GCTTGCGCATCTCGCCACTCTGCCCAGCTGAGCGCCCGCATGCTCGTTTCGTGAGTTGACTTAGG
520 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
12490632 CATATAGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACAAGACC
585 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * *
12490697 AAGGGTTGTGGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGC
650 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* * * * * *
12490762 ACCATCGCCAGAGCATCACCAGTGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
715 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
12490827 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAATTTGCCCTTATATTGGCCCCCTAT
780 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
**
12490892 CCCTCATCAAACCTCAAGAACTCACACCTCCC-TAAAGAGCATTTGAGATTTTACA
845 CCCTCATCAAACCTTGAGAACTCACACC-CCCTTAAAGAGCATTTGAGATTTTACA
* *
12490947 GGTTTCCTACCAGTA-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
12491011 CTTGTACACTTGGACTTTTTAGTTGAA-TTTTTTGTGCATGCCAACAAAAAAACAAGGATCATGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * *
12491075 CTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCACGAACCGCAAAAGGT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGT
* ** *
12491140 TTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGG
195 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
12491205 GACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCATGCAGAAATATGAAGATGTACCT
260 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * **
12491270 AAACCCACCTACCACCTTATTGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTAGTGC-
325 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCG
* * *
12491334 ACGCCCGCTTGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
390 CCGCCCGC-TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * ** * *
12491399 TCAGACCGGACTGAAGGTTGTGGCAGCAGCATCAACAGCACGCAGAGGGGGGCTCGG-TCGATCC
454 TCAGA-CAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCC
** * * * ** * *
12491463 TAGGCTTGCACATCCCGCCTCTCTGGCCGGTTGAGCACCTACACACTCGTTTTGTGGGTTGACTT
517 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
* *
12491528 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGACTTCATTCCCAGTCTAAGATCGGACCAG
582 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
*
12491593 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGG
647 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
* * * **
12491658 GG---CA----C----CATCGCCGGAGAACTTGACTGG-GGTCATTGGGGTTTCGGTGATCGGGG
712 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG-CATTGGGGTTCCGACGATCGGGG
* * * * * **
12491711 GGGCCAAGAGGGGTG-GTCGCAAATGGTGTGTGATGCATGCTGGTACTTGGCCCTTATATTGGCC
776 GGGCC-GGGGGGGTGTG-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
12491775 CCCCATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCCTTTGAGATTTTACA
839 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
12491836 GGTTTGCTGCTAGTAGCCATTAAAGTATCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
12491901 CTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATCCAAGGATCACGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * * * *
12491966 CTACAAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATATTAAAAAATCCCGAACCGTAAAAGGTT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
** * * *
12492031 TCAAAAATTGTGACAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCATGTGAAGGCTTAAGGG
196 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * * *
12492096 -CCATTATATGAATTTACAAGCCATAAAAATGTCACTGGGA-CCTAGAAATATGAAGATGTGCCT
261 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCT
* * * *
12492159 AAACCCACCTACCGCCCTATCGATCCACGGCTTGCACATCCCGTCTCTTTGGCCGACCTAGTGCC
325 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--
* * *
12492224 CGTCCGCCCGTCTGCCCGCTCATTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
388 CG-CCGCCCG-CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
12492289 AGATCAGACCAAACTGAGGGTTATGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCTGAT
451 AGATCAGA-CAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGAT
* * * * * *
12492354 CCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCATTGGTTGAC
515 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
*
12492419 TTAGGGATACAGAGTTCATTCCCAG-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
580 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
12492483 AGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACC
645 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* ** * * * **
12492548 GAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGGCGACATTAGGGTTTTGACGATC-GG
710 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
12492612 GGGGCCGGGGGGGTGTGCGCACAT-ATTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
775 GGGGCCGGGGGGGTGTGCGCACATGA-TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
**
12492676 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
839 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
12492737 GGTTTGCTGCCAATA-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * ***
12492801 CTTGTACACTTCGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCCCAT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * **
12492866 CTACCAAGTTTTGGGG-GAGAACTCCTTCCGAAATAATTTTAAAAAATCTTGAACCGCAAAAAGT
131 CTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
* *
12492930 TTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGA
195 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
12492995 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTGAAGATGTGGCT
260 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* *
12493060 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC-AGCTTAGTGC
325 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGC
* * *
12493124 -CCGCCCG-T--CCGCTCGTTTCATCAGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
389 GCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *** * * * * * * * *
12493185 TCGGATCGGACCGAAGGTTGCACCAACAAGATCGACAGCACACAGAAGGGGACCTGACCGATCCC
454 TCAGA-CAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCC
* * * * *
12493250 CGGCTTGCGTATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTA
518 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
12493315 CGCATACGGAGTTCATTCCCAGTCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA
583 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
** * * * *
12493380 CCGAGCATTGCGGCAGCACATGCGGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGCTGGG
648 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
* * * * * *
12493445 AG-ACCATCATCGGAGCATCGCCGGAGAACTTGACTGGTGGCAATAGGGTTCC-AGCGATCGGGG
713 -GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGG
* * * * *
12493508 GGGCCGGTGGGGTGTGCGCAAATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATGTTGACCCC
776 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
12493573 CTATCCCTCTTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
841 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
12493632 GGTTTGCTGCCAGT-GCCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
1 GGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
12493696 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCCTG
65 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
* * * * *
12493761 TCTAACAAGTTTAGGGCCAGAACTCCTTCCGAAAAAATTTTCAAAAATCCTGAACCGCAAAAAGT
130 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
** *
12493826 TTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
195 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
12493891 GACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCACGTAGAAATATGAAGATGTGCCT
260 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * *
12493956 AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTTTCTCTGGTCGACATAGTGCC
325 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--
* * * * *
12494021 CGCCCGCCCGCTCGCCCGCACGTTTTGTAGGTTGGCATAGGCATACGGAGTTCATTCCCAGACTA
388 CG-CCGCCCGCT-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
12494086 AGATTAGAATAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCT-A
451 AGATCAG-ACAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG-CTGA
* * * * **
12494150 TCCCCGGATTGCGCAT-CC-CCCCTCTGGCGGGCTGAGCGCCCACACGCTTATTTCGTGGGTTGA
514 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* * * *
12494213 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTACGGAGTTCATTCCCAGTCTAAGATCAGAT
579 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** * * * ** * * * * *
12494278 TGGATCGAGGGTTGCGGTAGCACATGCTAGGCTCGTCCATCTGCTGGTGTCACTTTTTTCTTCAT
644 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
* * * * *
12494343 CGGGGCACCATCGCCGGAGCATTGCCGGAGAACTTGACCGACGGCATTAGGGTTCCGACGATCGG
709 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* *** * *
12494408 AGGGG-TTAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCC
774 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * * *
12494472 GCTTATCCCTCATCAATCCTTAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACA
839 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
12494533 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTTCCAATGGTCACAAAA
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAA
* *
12494598 TCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATG
65 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
* ** * *
12494663 TCTACCAAGTTTGGTGCCAAAACTCCAGCTGAAAAAATTTTTAAAAAATCCCGAACCGCAAAAAT
130 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAG
* *
12494728 TTTCAAAAATCCTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
194 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
** ***
12494793 GGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCACATAGAAATATGAAGATGTGCC
259 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * *
12494858 TAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCCTGTCTCTCTGGCCAACGTAGTGC
324 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * *
12494923 -CCG-CC-C-GCCTGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGA
389 GCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * * * * * *
12494984 TCAGATCGGATGGAGGGTTGCGGTAGCAAGATCGACAGCACACAGATGGGGACCCGACCGATCCC
454 TCAGA-CAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCC
*
12495049 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
518 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
12495114 GGCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
583 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * *
12495179 CCGA---------C--CA-TTG-T-GG--C-AGCA-GATGCTGGTGCCGTATTTTTCTTCGCTGG
648 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG-TGCTGGTGCCGCATTTTTCTTCACCGG
* * * * * * *
12495226 GGCACTATCGTCGGAGCATCGTCGGAGAACCTGACCAGCGACAATAGGGTTCC-AGCGAT--AGG
712 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGG
* ** * *
12495288 GGGCTGGTAGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTAGTTGGCCCTTATATTGGCCCC
776 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
12495353 CTATTCCTCTTCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACA
841 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
12495412 GGTTTGCTGTCAGT-GCCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
1 GGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * **
12495476 TATTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAACGATCCCG
65 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
* * * *
12495541 TCTACCATGTTTGGGGCCAGAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
130 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
** *
12495606 TTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAG
195 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * *
12495671 GACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGTATGTAGAAATATTAAGATGTGCCT
260 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * * *
12495736 AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCATCTCTTTGGCTGGCATAGTGCC
325 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--
* * * *
12495801 CACCCACCCGTCCACCCGCCCGCCCGCTCGTTTTGTCGGTTGGCATAGGCATACGGAGTTCATTC
388 --------CG-CCGCCCG-CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
12495866 CCAGACTAAGATCAGCATAGACCGAGGGTTGTGGCAGTAGGATCAGCAGCACGTAAATGGGGACC
443 CCAGTCTAAGATCAG-ACAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
** * * *
12495931 CGGCCT-ATCCCCAACTTGCGCAT-CC-CCCCTCTGGCCGGCTGAGCGCCCCCACGCTCGTTTTG
507 CGG-CTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* * * *
12495993 TGGGTTGACTTAGGCAGAC-GAAGTTCATTCCCAGTCTAAGCCTATGGGGTTCA-TCCCAGTCTA
571 TGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * * * * **
12496056 AGATCAGACCGGACTGAGGGTTGCGGTAGCACATGCTAGGCTTGGCCATCTACTAGTGTTGCATT
635 AGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * ** * *
12496121 TTTCTTCATCGGGGCACCATTGTCGGAGCATCGTCAAAGAACTTGACCGGCGGCATTGAGGTT-C
700 TTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * * * *
12496185 GATGATCGGAGGGGTCGGAGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTATTTGGCCCTT
765 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
12496250 ATATTGGCCGCTTATCCCTCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTAAGATT
830 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
12496315 TTACA
895 TTACA
*
12496320 GGTTTGCTGCCAAT-GCCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
1 GGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
12496384 TCTTGTACACTTTCGAGTTTTTAGCTGAATGTTTTTT-TGCATGCCAACAAAAATACAAGGATCC
65 TCTTGTACAC-TTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* **
12496448 TGTCTACCAAGTTTGGGGCCAGAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAA
128 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
** *
12496513 GTTTGGAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAA
193 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
12496578 GGGACCACTGTATGAATTTACAATGCCATAAAAATGGCATTGGTATGTAGAAATATGAAGATGTG
258 GGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * *
12496643 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCTGGCGTAGT
322 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * * * * * *
12496708 GCCCGCCCGCCCGTCCGTCCGCTCATTTTGTAGGTAGGCATAGGCATACGGAGTTCATTCCCAGA
387 G--CG-CCGCCCG-CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* *
12496773 CTAAGATCAGAATAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGCC
448 CTAAGATCAG-ACAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG-C
* * *
12496838 T-ATCCCTGGCTTGCGCAT-CC-CCCC-CTGGCCGACTGAGCACTCGCACGCTCGTTTCGTGGGT
511 TGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * *
12496899 TGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGCCTATGGACTTCA-TCCCAGTCTAAGATC
576 TGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * **** * **
12496962 AGACCGGACCGAGGGTTGCGGTAGCACATGCTAGGCTTACCCATCTGCTGGTTTCGCATTTTTCT
640 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
12497027 TCATCGGGGCACCATCGCCGGAGCATCGCCGAAGAACTTGACCGACGGCATTGGGGTTTCGACGA
705 TCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * * * * *
12497092 TCGGAGGAGTCGGGGGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTATTTGGCCCTTATCTT
770 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
** *
12497157 GG-CCGTTATCCCTCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
835 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
12497221 GGTTCGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
12497286 CTTGTACAGTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA-AAAAATAAAAGGATCATGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
** * * * *
12497350 CTACCAAGTTTGGTACCAAAACTCCTTTCGAAAAAATTTTAAAAAAACCCGAACCACAAAAATTT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* * * * *
12497415 TCAAAAAACTTGAAAAATAGAAAACGAGTCGTCTCGCCATTAAACTTCAGGTGAAGGCTTAAGGG
196 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
** ** *
12497480 ACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCACACAGAAATATGAAGACGTGCCTA
261 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* *
12497545 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC-AGCGTAGTG-T
326 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCG
*
12497608 CCG-CC-C-GCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
390 CCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
12497670 CAGATCAGACCGAGGGTTGGGGCAGCAAGATTGACAGCACACAGAGGGGGACCCGACCGATCCCC
455 CAGA-CAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCC
* *
12497735 GGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAG
519 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * *
12497800 GCATATGGAGTTCATTCCCAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAC
584 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * *
12497865 TG-GGAGTTGTGGCAGCACATGCTGGGGTCAGGCATGTGCTGGTGCCGCATTTTTCTTCTCTGGG
649 CGAGG-GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
* * * * *
12497929 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGCCGGCAATAGGGTTCCAACAATCGGGGGG
713 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* *
12497994 GCCGGTGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCT
778 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* **
12498059 ATCCCTCTTCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACA
843 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
12498115 GGTTTGCTGCCAGT-GCCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAA
1 GGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * ***
12498179 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCCCA
65 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
* * * * *
12498244 TCTACCAAGTTTGGGGCTAGAACTTCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAATGT
130 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
**
12498309 TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
195 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
12498374 GACCATTGTATCAATATACAAGCCATAAAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
260 GACCATTGTATGAATTTACAAGCCAT--AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
** * * *
12498439 CTAAACCCACCTACCACCCTATCGATCCGTGGCTTACGCATCCCGTCTCTCTAGCCGGCGTAGTG
323 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * * *
12498504 C-CCGCCCGCCCTCCCGCCCGCTCGTTTTGTAGGTTGACATAGGCATACGGAGTTTATTCCCAGA
388 CGCCGCCCG--CT---GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* *
12498568 CTAAGATCAGAATAGACTGAGGG-T-T--------G--CGGCAGCACGCAGAGGGGGACCCGGCC
448 CTAAGATCAG-ACAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG-C
* * * * * * * *
12498621 T-ATCCCTGACTTGCGCATCCC-CCCCTTTGGCCGACTGAGCGCTCGCACGCTCATTTTGTGGGT
511 TGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * *
12498684 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATTG
576 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
12498749 AACCAGACTGAGGGTTGC
641 GACCAGACCGAGGGTTGC
12498767 TGCCGCATTT
Statistics
Matches: 10205, Mismatches: 1016, Indels: 326
0.88 0.09 0.03
Matches are distributed among these distances:
877 197 0.02
878 113 0.01
879 145 0.01
880 70 0.01
881 1 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 2 0.00
887 3 0.00
888 46 0.00
889 229 0.02
890 2821 0.28
891 631 0.06
892 581 0.06
893 585 0.06
894 462 0.05
895 429 0.04
896 692 0.07
897 212 0.02
898 101 0.01
899 427 0.04
900 245 0.02
901 711 0.07
902 541 0.05
903 241 0.02
904 103 0.01
905 63 0.01
906 5 0.00
907 63 0.01
908 182 0.02
909 189 0.02
910 110 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGC
CGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
CCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
Found at i:12494257 original size:26 final size:26
Alignment explanation
Indices: 12494221--12494270 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
12494211 GACTTAGGCA
12494221 TACGGAGTTCATTCCCAGTCTAAGCC
1 TACGGAGTTCATTCCCAGTCTAAGCC
12494247 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12494271 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:12498729 original size:26 final size:26
Alignment explanation
Indices: 12498692--12498744 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12498682 GTTGACTTAG
*
12498692 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12498718 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12498744 G
1 G
12498745 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12499586 original size:26 final size:26
Alignment explanation
Indices: 12499550--12499628 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
12499540 GTTGACTTAG
*
12499550 GCATACAGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
*
12499576 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
12499602 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
12499628 G
1 G
12499629 ATCAGACCAG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:12500521 original size:27 final size:27
Alignment explanation
Indices: 12500483--12500534 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
12500473 TGACTTAGGC
*
12500483 ATACGGAGTTCATTCTCAGTCTAAGCA
1 ATACGGAGTTCATTCCCAGTCTAAGCA
*
12500510 ATACTGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12500535 ATCGGACCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (27 bp):
ATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12502324 original size:26 final size:26
Alignment explanation
Indices: 12502287--12502339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12502277 GTTGACGTAG
*
12502287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12502313 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12502339 G
1 G
12502340 ACCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12504795 original size:26 final size:26
Alignment explanation
Indices: 12504755--12504833 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12504745 GTTGGGTTGG
12504755 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
12504781 GTATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12504807 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12504833 G
1 G
12504834 ATCAGACCAG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12505087 original size:15 final size:15
Alignment explanation
Indices: 12505067--12505096 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12505057 GAACTCACAC
12505067 CCCCTTAAAGAGCAT
1 CCCCTTAAAGAGCAT
*
12505082 CCCCTTAAAGTGCAT
1 CCCCTTAAAGAGCAT
12505097 TTGAGATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.23
Consensus pattern (15 bp):
CCCCTTAAAGAGCAT
Found at i:12505726 original size:26 final size:26
Alignment explanation
Indices: 12505697--12505749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12505687 GTTGACTTAG
*
12505697 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12505723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12505749 G
1 G
12505750 ATCGAACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12507190 original size:26 final size:26
Alignment explanation
Indices: 12507154--12507206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12507144 GTTGACTTAG
12507154 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
12507180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
12507206 G
1 G
12507207 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:12508411 original size:888 final size:882
Alignment explanation
Indices: 12506286--12508940 Score: 3690
Period size: 889 Copynumber: 3.0 Consensus size: 882
12506276 GTTGGCTTAC
* * * * * *
12506286 GCATACGGAGTTCATTCCCAGTCTAACATCGGATTGGACCAAAGGCTGTGGCAGCACAT-CTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC-GAGGGTGCGACAGCACATGCTAGG
** *
12506350 CTCAAGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCATCGGAGA
65 CTCCGGCATGTGCTGGTGCCGTATTTTTCTTCA-C-GGGCACCATC--T----C--C-T-GGAGA
* * * * * *
12506415 ACCTGACCGGCGGCATTGGGG-TTCCAGTGATCG-GCGGGGTCGAGGGGGTGTGCGCACATGATG
118 ACCTG--CGGCAGCATTGGGGTTTCGA-CGATCGAG-GGGGCCGGGGGGGTGTGCGCACGTGATG
* * * * **
12506478 TGTGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAAATC
179 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAGCTC
* * * * * * * *
12506543 ACACCCCCTTAAAGAGTATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
244 AAACCGCCTTAAAGAGAATTTGAAATTTTACAGGTTCGCTGCCAGTAGCCACTAAAGTGTCTGAA
* * *
12506608 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTCTAGCTGAATTTTTT
309 TTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
12506673 TGTGCATGCCAACAAAAATACGAGGATCACGTCTAC-CATGCTTGGGGCCAAAACTCCTTCCAAA
374 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAT-TTTGGGGCCAAATCTCCTTTC-AA
* *
12506737 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT-GA
437 AAAATTTTACAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG-
*
12506801 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCATAAAAATG
501 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCATAAAAATG
* * ** * * *
12506866 GCTTTGCCATGCAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTT
566 GCATTGGCACACAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * * * *
12506931 GCACATCCCGTCTCTCTGGCTGGCGTAGT---GCATGCCCGCCTGCTTGTTTCGTCGGATGGCTT
631 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTT
* * ** *
12506993 AGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCAAGGGTTGCAGCAGCAGGATCGG
696 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
12507058 CAGCATGCAGAGGGGGACCCGATCGATCCTCGACTTGCACATCCCACCCCTCTGGCCGGCTGAGC
761 TAGCAAGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGC
* *
12507123 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
826 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12507180 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGG-TGCGACAGCACATGCTAG
** *
12507244 GCT-CGAGCATGTGCTGGTGCCACATTTTTCTT--C--G-------T-C-GGGGAACCAT-C-GC
64 GCTCCG-GCATGTGCTGGTGCCGTATTTTTCTTCACGGGCACCATCTCCTGGAGAACC-TGCGGC
12507293 AGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCT
127 AGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCT
*
12507358 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTGGAGAGCTCAAACCGCCTTAAA
192 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAGCTCAAACCGCCTTAAA
*
12507423 GAAAATTTGAAATTTTACAGGTTCGCTGCCAGTAGCCACTAAAGTGTCTGAATTGGGGACACTTT
257 GAGAATTTGAAATTTTACAGGTTCGCTGCCAGTAGCCACTAAAGTGTCTGAATTGGGGACACTTT
*
12507488 TTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
322 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
12507553 AAAAATACAAGGATCACAT-TACAAATTTTGGGGCCAAATCTCCTTTCAAAAATATTTTACAAAA
387 AAAAATACAAGGATCACGTCTACAAATTTTGGGGCCAAATCTCCTTTCAAAAA-ATTTTACAAAA
*
12507617 TCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
451 TCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
12507682 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGACATTGGCACACAG
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCACACAG
* * * *
12507747 AAATATGAAGATTTTCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGCCTC
580 AAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
12507812 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCATTTGGCTTAGGCATACAGAGT
645 TCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGT
* * * * * *
12507877 TCATTCCCAGTCTAAGATCAGACCGGACTGACGGATGTGGCACCAGGATCGGTAGCACGCAGATG
709 TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCAAGCAGAGG
12507942 GGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCG
774 GGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCG
* *
12508007 TTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
12508051 GCATATTGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTAGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT-GCGACAGCACATGCTAGG
12508116 CTCCGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCTCCTGGAGAACCTGGCGGC
65 CTCCGGCATGTGCTGGTGCCGTATTTTTCTTCA-CG-GGCACCATCTCCTGGAGAACCT-GCGGC
12508181 AGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCT
127 AGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCT
*
12508246 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAGCTCAGACCGCCTTAAA
192 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAGCTCAAACCGCCTTAAA
*
12508311 GAGCATTTGAAATTTTACAGGTTCGCTGCCAGTAGCCACTAAAGTGTCTGAATTGGGGACACTTT
257 GAGAATTTGAAATTTTACAGGTTCGCTGCCAGTAGCCACTAAAGTGTCTGAATTGGGGACACTTT
*
12508376 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAC
322 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
12508441 AAAAATACAAGGATCACGTCTACAAATTTTAGGGCTAAATCTCCTTTCGAAAAAATTTTACAAAA
387 AAAAATACAAGGATCACGTCTACAAATTTTGGGGCCAAATCTCCTTTC-AAAAAATTTTACAAAA
* * *
12508506 TCCCGAGCCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
451 TCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
12508571 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCACACAG
* *
12508636 AAATATAAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCGTGCGCATCCCGTCTC
580 AAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
12508701 TCTGGCCGACGTAGTGCTCGCCCGCCCGCACGCTCGTTTCAT-AGGTTGGCTTAGGCATACGGAG
645 TCTGGCCGGCGTAGTGC-CGCCCGCCCGCCCGCTCGTTTCGTCA-GTTGGCTTAGGCATACGGAG
** ** * * * *
12508765 TTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTACGGTAGTAGGATCGGTAGCAAGTAGAG
708 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCAAGCAGAG
* * * * *
12508830 GGGGGCCAGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGCCCGCACGCTC
773 GGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTC
12508895 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12508940 G
1 G
12508941 ATCGGACCGG
Statistics
Matches: 1574, Mismatches: 147, Indels: 85
0.87 0.08 0.05
Matches are distributed among these distances:
865 5 0.00
866 130 0.08
867 340 0.22
868 6 0.00
870 8 0.01
871 275 0.17
872 3 0.00
873 1 0.00
874 1 0.00
877 1 0.00
880 1 0.00
884 1 0.00
885 2 0.00
886 7 0.00
887 1 0.00
888 276 0.18
889 429 0.27
890 5 0.00
892 1 0.00
893 3 0.00
894 48 0.03
895 30 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGCGACAGCACATGCTAGGC
TCCGGCATGTGCTGGTGCCGTATTTTTCTTCACGGGCACCATCTCCTGGAGAACCTGCGGCAGCA
TTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAGCTCAAACCGCCTTAAAGAGA
ATTTGAAATTTTACAGGTTCGCTGCCAGTAGCCACTAAAGTGTCTGAATTGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACAAATTTTGGGGCCAAATCTCCTTTCAAAAAATTTTACAAAATCCCA
AACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCATAAAAATGGCATTGGCACACAGAAATAT
GAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCAAGCAGAGGGGGACCC
GACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12509354 original size:26 final size:26
Alignment explanation
Indices: 12509318--12509370 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12509308 GTTGACTTAG
12509318 GCATACGGAGTTCACTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
* *
12509344 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
12509370 G
1 G
12509371 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:12511982 original size:26 final size:26
Alignment explanation
Indices: 12511945--12511997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12511935 GTTGACTTAG
*
12511945 GCATACGAAGTTCATTCGCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
* *
12511971 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
12511997 G
1 G
12511998 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:12512878 original size:26 final size:26
Alignment explanation
Indices: 12512848--12512900 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12512838 GTTCGCTTTG
*
12512848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12512874 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12512900 G
1 G
12512901 ATCAGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12513326 original size:900 final size:898
Alignment explanation
Indices: 12511544--12515867 Score: 5507
Period size: 903 Copynumber: 4.8 Consensus size: 898
12511534 CTCCTTCCAA
* * * *
12511544 AAAAATTTTAAAAAATCTTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
12511609 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
66 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
12511674 TGTGCCAAAACCCACC-AGCCACCCTATCGATCCATGGC--TTGCACTTCCCGTCTCTCTAGCCG
131 TGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTTTGCA--TCCCGTCTCTCTGGCCG
* * * * * *
12511736 GCATAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGCCTTAGGCATACGAAGTTCAT
193 G-GTAGTGCCCGCCC-TCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
12511801 TCCCAATCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATCGGCAGCACACAGACGGAGA
256 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGGCAGCACACAGAGGGGGA
* *
12511866 -CCTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCAAGCTCGTTT
321 CCCT-ATCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
12511930 CATGGGTTGACTTAGGCATACGAAGTTCATTCGCAGACTAAGCATACGGAGTTCATTCCCAGTCT
384 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
12511995 AAGATCAGACCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTAT
449 AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCAT
* ** * *
12512060 TTTTCTTCA-CTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCTACGGTATTGGGGAT
514 TTTTCTTCATC-GGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* **
12512124 CCGACGATCGGGTGGGCCGGGGGGCTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCC
578 CCG-CGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
12512189 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
641 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
12512254 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTC
706 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* ** *
12512319 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATATCAACAAAAATGCAAGG
771 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
12512384 ATCACGTTTACCAA-TTTCGGGGCCAAAACTCC-ATCGAAAAAAATTTGAAAAGATACCGAACCG
836 ATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAAT-CCGAACCG
12512447 T
898 T
* *
12512448 AAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
12512513 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGA
66 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
12512578 TGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGCTTTTGCATCTCATCTCTCTGGCCGGGA
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTTGCATCCCGTCTCTCTGGCCGGG-
* * * *
12512642 TACTGCCCGCCCATCCTCCCGCCCGCTCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCC
195 TAGTGCCCGCCC-TCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * * * * * *
12512707 CAGTCTAAGATTGGACCAGACTGAGGGTTGTGACAGTAGCATCGGCAGCACGCAGAGGTGGATCC
259 CAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC
* * ** *
12512772 TTTCGATCCCCGGCTTGCGCATCTCGCTCCTCTGGCCGGCTGAGCATCCGCACGCTCGTTTCATG
324 TATCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
12512837 GGTTCG-CTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
388 GGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * **
12512901 ATCAGACCTGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA-ATGCTGGTGCTACATTTT
452 ATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTT
* * * *
12512965 TCTTCGTCGGGGAACCTTCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCTG
517 TCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-G
* * ** *
12513030 CGA-CCGGGAGGCCGGGGGGTGTGCGCATGTGATGTGCGATGGGTGCTGGTACTTGGCCTTTATA
581 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
12513094 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
646 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
12513159 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAGAAA
711 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
12513224 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAACAAAAATACAAGGATCAC
776 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** ** **
12513289 CTCTACCGGGTTTGGGGAAAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCCC
841 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATC-CGAACCGT
* * *
12513348 AAAAAGTTTCGAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGC
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * ** * *
12513413 CTTAAAGGACGATTGTATGAATTTGCAAGAAATGAAAATGGCATTGGCACGTAGAAATATGAAGA
66 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *** * *
12513478 TGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCACATCCCGTCTTTCTGGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTTGCATCCCGTCTCTCTGGCCG-GG
* *
12513543 TAGTGCCCG--CT--TGCCCACCCGCACGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
195 TAGTGCCCGCCCTCCT-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
12513604 CAGTCTAAGATCAGACCGGACTGAGGG-T-T----GC---A---GCAGCACACAGAGGGGGACCC
259 CAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC
* * * * * *
12513657 AACCGATCTCCGACATGCGCATCCTGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
324 TATCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * *
12513722 GGTTGACTTTGGCATATGAAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATA
388 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * *
12513787 TTTGACCAGACTGAGGGTTGCGGTAGTACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
453 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTT
* * * *
12513852 CTTCACCGGGGCACCATCGCCAGAGTATCATCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGC
518 CTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GC
*
12513917 GATCGGGGGGGCCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
582 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
12513982 TGGCCCCCTATCCCTCACCAAACCAT-GAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTG
647 TGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
12514046 CAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
711 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
12514111 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACATAAGGATCAC
776 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * *
12514176 GTCTACCAAGTTTGGGGTCAAAAGACCTTTCGAAAAAATTTTAAAAAATCCTGAACCAT
841 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCC-GAACCGT
* * * *
12514235 AAAAAGTTTCAAAATTCATGAAAAATAGAAAACGACTCGTCTCGCCATGAAACTTCACTTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
12514300 CTTACAA-GACCATTGTATGAATTTACAAGCCATGAAAATGGCATTTGCATGCAGAAATATGAAG
66 CTTA-AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * ** *
12514364 ATGTGCCTAAACCAACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGGACGGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTTGCATCCCGTCTCTCTGGCCGG-
* * ** *
12514429 GTAGTGCCC-ACCTGCCCGCCCGCTTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
194 GTAGTGCCCGCCCT--CCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * ** ** *
12514493 CCCAGTCGAAGATTAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCATGCAGAGGTGGAC
257 CCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGGCAGCACACAGAGGGGGAC
* * * * * *
12514558 CCTTTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGTCCGCACGCTCGTTTTG
322 CCTATCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
12514623 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAA
386 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * * *
12514688 GATCGGACTGGACCGAGGGTTACGGTAGCACATGCTGGGCTTAGGCATGTGTTGTTGCCGCTTTT
451 GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTT
* * * * * * * * * *
12514753 TTGTTCATCGGGGCACCATTGCTAGAGAATTGCCGGAGAACCTGACTGACGACATTAGGGTTCCG
516 TTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
** * *
12514818 ACGATCGGGGGGGTTGGGGGGTGTGCGCACATGATGTGCAAT-GGTGCTGGTACTGGGCCCTTAT
581 -CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
12514882 ATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAAATTTT
645 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
12514947 ATAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAA
710 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * *
12515012 AATCTTGTACACTTCGAGTGTTTAGCTGAATTGTTTTGTGCATGCCAACAGAAATACAACGATTA
775 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
12515077 CATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACTGT
840 CGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAAT-CCGAACCGT
* * *
12515137 AAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAGGAATCTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
12515201 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAACA
66 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
12515266 TGCGCCTAAACCCACCTACCACCCTATCGATCCAC--ATTTTGCACATCCCGTCTCTCTGGCCGA
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTTG--CATCCCGTCTCTCTGGCCG-
* * *
12515329 CGTAGT----G--CT--TGCCCGCCCGCTCGTCTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
193 GGTAGTGCCCGCCCTCCT-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * ** *
12515386 CCCAGTCTAAGATCAAATCAGACTGATGGTTACGGTAGTAGGATCGATAGCACATAGAGGGGGAC
257 CCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGGCAGCACACAGAGGGGGAC
* * * * * * * *
12515451 CCAATCGATCCTCGACTTGTGCATCCCACCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTTG
322 CCTATCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
12515516 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AGTACGGAGTTTATTCCCAGTCTA
386 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-TACGGAGTTCATTCCCAGTCTA
* *
12515580 AGATCAGATCAGACCGAGGGTTGCGGCAGCACATTCTGGGCTTGGGCATGTGCTGGTGCCGCATT
450 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATT
** * * ** ** * * *
12515645 TTTCTTTGTCGGGGCACCATCGTCGGAGCATCAACAAAGAACCTAACTGGCGGCATTGGGGTTCT
515 TTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
12515710 G-GTAGTCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
580 GCG-A-TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * * *
12515774 ATATTAGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGTATTTGAAATT
643 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
12515839 TTACAGGTTTGCCT-CCAGTAGCCATTAAA
708 TTACAGGTTTG-CTGCCAGTAGCCATTAAA
12515868 AGGTTCAAAA
Statistics
Matches: 2966, Mismatches: 398, Indels: 122
0.85 0.11 0.03
Matches are distributed among these distances:
884 2 0.00
885 165 0.06
886 75 0.03
887 462 0.16
888 6 0.00
891 68 0.02
892 3 0.00
893 344 0.12
894 102 0.03
895 3 0.00
896 4 0.00
897 69 0.02
898 1 0.00
899 5 0.00
900 395 0.13
901 226 0.08
902 326 0.11
903 561 0.19
904 144 0.05
905 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTTGCATCCCGTCTCTCTGGCCGGGT
AGTGCCCGCCCTCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCTA
TCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTT
CATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGCGATC
GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCGAACCGT
Found at i:12514672 original size:26 final size:26
Alignment explanation
Indices: 12514636--12514688 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12514626 GTTGACTTAG
*
12514636 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12514662 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12514688 G
1 G
12514689 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12516304 original size:26 final size:26
Alignment explanation
Indices: 12516268--12516320 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12516258 GTTGACTTTG
* *
12516268 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12516294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12516320 G
1 G
12516321 ATAGGACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12517209 original size:26 final size:26
Alignment explanation
Indices: 12517173--12517223 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12517163 TGACTTAGGC
*
12517173 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACAGAGTTCATTCCCAGTCTAAGG
12517199 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12517224 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:12517941 original size:26 final size:26
Alignment explanation
Indices: 12517905--12517957 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12517895 GTTGACTTAG
* *
12517905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTACCAGTCTAA
*
12517931 GCATATGGAGTACATTACCAGTCTAA
1 GCATACGGAGTACATTACCAGTCTAA
12517957 G
1 G
12517958 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTACCAGTCTAA
Found at i:12518599 original size:720 final size:725
Alignment explanation
Indices: 12517152--12518573 Score: 2111
Period size: 722 Copynumber: 2.0 Consensus size: 725
12517142 TCGCATGCTC
* * *
12517152 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATACAGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTACATTACCA
** * *
12517217 GTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCATATCCTGCCCTCAGGCATGTGCTGGTGCC
66 GTCTAAGATCAGACCAGACCAAGGGTTCCGACAGCACATCCTGCCCTCAGGCATGTGCTGGTGCC
* * * *
12517282 GTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTTACCGACGACATTAGG
131 GCATTTTTCTTCACCGGGG--CCA---CC---GCATCGTCGAAGAACATGACCGACGACATTAGG
* *
12517347 ATTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTAGTTGG
188 ATTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCCGGTACTTGG
*
12517412 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCTTAAAGAGCATTTG
253 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCACCTTAAAGAGCATTTG
12517477 AGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
318 AGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
12517542 GTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATAC
383 GCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTGTGCATGCCAACAAAAATAC
* * * *
12517607 AGGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAAC
448 AAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAAC
** *
12517672 CGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
513 CG-AAAAAGTTTCCAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGA
* * *
12517737 AGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
577 AGGCTTAAGGGACAACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAAGA
* *
12517802 AGATGTGCCTAAACTCACCTACCACCCCATCGATCCAAGGCTTGCGCATCCCACCCATCTGGCCG
642 AGATGTGCCTAAACCCACCTACCACCCCATCGATCCAAGGCTTGCACATCCCACCCATCTGGCCG
*
12517867 GCTGAGTGCCCGCACGTTT
707 ACTGAGTGCCCGCACGTTT
* **
12517886 GTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTACATTACCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTACATTACCA
* * * * * ** *
12517951 GTCTAAGATCGGACCAGATCGAGGGTTCCGATAGCACATGCTGGGCTCAGGCATGTGCTGGTGCT
66 GTCTAAGATCAGACCAGACCAAGGGTTCCGACAGCACATCCTGCCCTCAGGCATGTGCTGGTGCC
* * * * * *
12518016 GCATTTTTCTTCTCCTGGG-CA-C-CATCGTCGAAGAACATGACCGGCGACATTAGGGTTTCGGC
131 GCATTTTTCTTCACCGGGGCCACCGCATCGTCGAAGAACATGACCGACGACATTAGGATTCCGAC
* *
12518078 TATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
196 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCCGGTACTTGGCCCTTATA
* * *
12518142 TTGGCCCCCTGTCCCTCATCAAAATCTCGAGAACTCAAACC-CCTTAAAGAGCATTTGAGATTTT
261 TTGGCCCCCTATCCCTCATC-AAACCTCAAGAACTCAAACCACCTTAAAGAGCATTTGAGATTTT
* * *
12518206 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAA
325 ACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAA
12518271 AATCTTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTTGTGCATGCCAACAAAAATACAAGGATC
390 AATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTGTGCATGCCAACAAAAATACAAGGATC
**
12518335 ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACTC-AAAA
455 ACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAAC-CGAAAA
* *
12518399 AGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTTCCATCAAACTTCACGTGAAGGCTTA
519 AGTTTCCAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTA
* * *
12518464 AGGGACAATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTG
584 AGGGACAACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAAGAAGATGTG
* *
12518529 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
649 CCTAAACCCACCTACCACCCCATCGATCCAAGGCTTGCACATCCC
12518574 GTTTCTCTGG
Statistics
Matches: 622, Mismatches: 64, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
720 164 0.26
721 84 0.14
722 181 0.29
723 62 0.10
727 1 0.00
731 2 0.00
734 128 0.21
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (725 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTACATTACCA
GTCTAAGATCAGACCAGACCAAGGGTTCCGACAGCACATCCTGCCCTCAGGCATGTGCTGGTGCC
GCATTTTTCTTCACCGGGGCCACCGCATCGTCGAAGAACATGACCGACGACATTAGGATTCCGAC
GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCCGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCACCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGAAAAAG
TTTCCAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAG
GGACAACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAAGAAGATGTGCC
TAAACCCACCTACCACCCCATCGATCCAAGGCTTGCACATCCCACCCATCTGGCCGACTGAGTGC
CCGCACGTTT
Found at i:12518826 original size:26 final size:26
Alignment explanation
Indices: 12518796--12518848 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12518786 GTTGACGTAG
*
12518796 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12518822 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12518848 G
1 G
12518849 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12520301 original size:26 final size:26
Alignment explanation
Indices: 12520265--12520317 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12520255 GTTAACTTAG
*
12520265 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
*
12520291 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
12520317 G
1 G
12520318 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:12521416 original size:882 final size:882
Alignment explanation
Indices: 12519409--12522819 Score: 4693
Period size: 882 Copynumber: 3.8 Consensus size: 882
12519399 GTTAGCTTAG
* * * * *
12519409 GCATGCGAAGTTCAATCCCAGTCTAAGATC-AGACCGGGCCGAGGGTTAC-AGCAGCACATGCTG
1 GCATACGAAGTTCATTACCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGA-CAGCACATGCTG
* * * *
12519472 GGCTCGAGCATGTGCTGGT-TCCAG-ATTTTTCTTCGCCTGGGCACCATCGCCGGAGAGCCTGAC
64 GGCTCGGGCATGTGCTGGTGT-C-GTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGAC
* * * * *
12519535 CGACGGCATTGAGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
127 CGGCGGCATT-AGGGTTCGGCTATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
12519599 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCGCACCCCTTT
191 GCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTT
12519664 AAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
256 AAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
**
12519729 ATTTTTCAAATGGCCAGAAAATCTTGCGTACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
321 ATTTTTCAAATGGCCAGAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
12519794 AGCAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAA
386 AGCAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAA
* * *
12519859 AATCTCGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATCAAA
451 AATCTCGAACCGCAAAAAGTTTCGAAAATCATAAAAAATAAAAAACGAGTCGTCTTGCCATCAAA
*
12519924 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGA
516 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGC
*
12519989 AGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATAAATCCACGGCTTGCGCATCCCGTC
581 AGAAATATGAAGAT-AG--T-AACCCACCTACCACCCTATAAATCCACGGCTTGCGCATCCCATC
*
12520054 TCTCTGGCCGGCGTAGT----GACCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATACGAA
642 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATACGAA
*
12520115 GTTCATTCCCAGTCTAAGATTGGACTGGACCAAGAGTTGTCGCAGCAGGATCGGCAGCACGCAGA
707 GTTCATTCCCAGTCTAAGATCGGACTGGACCAAGAGTTGTCGCAGCAGGATCGGCAGCACGCAGA
12520180 GGGTGACCCGGTCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCT
772 GGGTGACCCGGTCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCT
12520245 TGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 TGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
12520291 GCATACGGAGTTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGAAGTTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGG
*
12520356 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTTGTCGGGGCACCATCGCCGGAGAACCTGACCGGC
66 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGC
12520421 GGCATTAGGGTTCTGGCTATCGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 GGCATTAGGGTTC-GGCTATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
12520485 GTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCGCACCCCCTTAAAG
195 GTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTTAAAG
12520550 AGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTT
260 AGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTT
**
12520615 TTCAAATGGCCAGAAAATCTTGCGTACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCA
325 TTCAAATGGCCAGAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCA
12520680 AAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATC
390 AAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATC
* * * * *
12520745 TCAAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTC
455 TCGAACCGCAAAAAGTTTCGAAAATCATAAAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTC
12520810 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCAGAA
520 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCAGAA
*
12520875 ATATGAAGAT-GT-GCCCACCTACCACCCTATAAATCCACGGCTTGCGCATCCCATCTCTCTGGC
585 ATATGAAGATAGTAACCCACCTACCACCCTATAAATCCACGGCTTGCGCATCCCATCTCTCTGGC
12520938 CGGCGTAGTGCCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTC
650 CGGCGTAGTGCCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTC
*
12521003 CCAGTCTAAGATTGGACTGGACCAAGAGTTGTCGCAGCAGGATCGGCAGCACGCAGAGGGTGACC
715 CCAGTCTAAGATCGGACTGGACCAAGAGTTGTCGCAGCAGGATCGGCAGCACGCAGAGGGTGACC
* * * *
12521068 CGGCCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTTATTTCGT
780 CGGTCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCGT
*
12521133 GGGTTAACTTAGGCATATAGAGTTCATTCCCAGTCTAA
845 GGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
12521171 GCATACGAAGTTCATTACTAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGG
* *
12521236 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTTGTCGGGGCACCATCGCCTGAGAACCTGACCGGC
66 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGC
12521301 GGCATTAGGGTTCTGGCTATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 GGCATTAGGGTTC-GGCTATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* **
12521366 GTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAATCTTGAGAACTCACACCCCCTTAAA
195 GTACTTGGCCATTATATTGGCCCCCTATCCCTCATC-AAACCACGAGAACTCACACCCCCTTAAA
* * * *
12521431 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATTGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATT
* *
12521496 TTTCTAATGGCCATG-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
324 TTTCAAATGGCCA-GAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-A
* * *
12521560 GAAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAA
387 GCAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAA
* * * * * *
12521625 ATCTTGAA-CTCAAAAAGTTTCCAAAATCATGAAAAATAAAAAACGAGTCGTCTTTCCATGAAAC
452 ATCTCGAACCGCAAAAAGTTTCGAAAATCATAAAAAATAAAAAACGAGTCGTCTTGCCATCAAAC
* * * *
12521689 TTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGTCATTGGCATGCA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCA
* * ** * * *
12521754 GAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACGTCCCATTT
582 GAAATATGAAGAT-AG--T-AACCCACCTACCACCCTATAAATCCACGGCTTGCGCATCCCATCT
* * * ** *
12521819 CTCTGGCCGACGTAGTGCCCTCCCGCCCGTCCGCCCGCCCATTCGTTTTGTCAGTTGGCTTAGGC
643 CTCTGGCCGGCGTAGTG----CCCG--C--CCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGC
* * * * * * * * *
12521884 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG-CGGTAGTAGGATTGGCAG
700 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGAGTTGTC-GCAGCAGGATCGGCAG
* * * * ** *
12521948 CACACAGATGGG-GACCAGGTCGATCCCCGGCTTGTGA-ATCCTGCCCCTCTGGCCGGTTGAGCA
764 CACGCAGA-GGGTGACCCGGTCGATCCTCGGCTTG-CACATCCCACCCCTCTGGCCGGTTGAGCG
* * * *
12522011 CCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
827 CCCGCACGCTTGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * ** *
12522067 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGTGACAGCACATGCTAGG
1 GCATACGAAGTTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
12522132 CTCAGGCATGTGCTGGTGCCGCATTTTACTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAGA
* * * * * * *
12522197 ACCTAACTGGTGGCATTAGGGTTCCGATGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
120 ACCTGACCGGCGGCATTAGGGTTCGGCT-ATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
*
12522262 GATGGGTGCTGGTACTTGGACC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
184 GATGGGTGCTGGTACTTGG-CCATTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCAC
* *
12522326 A-CCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12522390 GGGAACACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
313 GGGGACACA--TTTTTCAAATGGCCAGAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
12522455 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACT-CTTTCCAAA
376 TGTGCATGCCAGC-AAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAA
* * * * * *
12522519 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGT
439 AAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATAAAAAATAAAAAACGAGTCGT
* * * * *
12522584 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGATTTTGCAAGCCATAAAAATG
504 CTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATG
** * * * * * **
12522649 GCATCAGTATGCAAAAATATGAAGATATTCCTAAACCCACCTACAACCCTGTCGATCCACGGCTT
569 GCATTGGCATGCAGAAATATGAAGATA---GT-AACCCACCTACCACCCTATAAATCCACGGCTT
** * * ** * * * *
12522714 GCGCATCCTGTCTCTCTGGTCGGCATAGCACCCGCCCGACCGTCTGCCCGCTCGTTTCGTCTGTT
630 GCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC--C-GCCCACTCATTTCATCGGTT
* * * *
12522779 GGCTTACGCATGCGGAGTTCATTCACAGTCTAAGATCGGAC
691 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
12522820 CAGGCCGAGG
Statistics
Matches: 2292, Mismatches: 180, Indels: 92
0.89 0.07 0.04
Matches are distributed among these distances:
876 58 0.03
878 1 0.00
880 369 0.16
881 78 0.03
882 811 0.35
883 80 0.03
884 1 0.00
886 1 0.00
888 54 0.02
892 4 0.00
894 1 0.00
895 1 0.00
896 270 0.12
897 4 0.00
899 2 0.00
900 3 0.00
901 2 0.00
902 1 0.00
903 2 0.00
904 57 0.02
905 67 0.03
906 23 0.01
907 229 0.10
908 173 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (882 bp):
GCATACGAAGTTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGC
GGCATTAGGGTTCGGCTATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTT
TCAAATGGCCAGAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAA
AATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCT
CGAACCGCAAAAAGTTTCGAAAATCATAAAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATAGTAACCCACCTACCACCCTATAAATCCACGGCTTGCGCATCCCATCTCTCTGGCC
GGCGTAGTGCCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCC
CAGTCTAAGATCGGACTGGACCAAGAGTTGTCGCAGCAGGATCGGCAGCACGCAGAGGGTGACCC
GGTCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCGTG
GGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:12522077 original size:26 final size:26
Alignment explanation
Indices: 12522041--12522093 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12522031 GTTGACTTAG
*
12522041 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12522067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12522093 G
1 G
12522094 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12523684 original size:26 final size:26
Alignment explanation
Indices: 12523648--12523700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12523638 GTTGACTTAC
*
12523648 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12523674 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12523700 G
1 G
12523701 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12524586 original size:26 final size:26
Alignment explanation
Indices: 12524550--12524602 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12524540 GTTGACTTAG
12524550 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
12524576 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12524602 G
1 G
12524603 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:12525490 original size:26 final size:26
Alignment explanation
Indices: 12525454--12525506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12525444 GTTGATATAG
12525454 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12525480 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12525506 G
1 G
12525507 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.