Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 64 of 131
Found at i:12525961 original size:902 final size:901
Alignment explanation
Indices: 12522786--12528934 Score: 8269
Period size: 902 Copynumber: 6.9 Consensus size: 901
12522776 GTTGGCTTAC
* * * *
12522786 GCATGCGGAGTTCATTCACAGTCTAAGATCGGACCAGG-CCGAGGGTTGAGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACCGAGGGTTGCGACAGCACATGCTGG
* *
12522850 GCTCGGGCATGTGCTGGTTCTGCATTTTTCTTCGTCGGGGCACCATCGCC-G-G-A-----GAG-
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGAGA
* * ** ** * *
12522906 -CCTGACCGGCAGCATTGGGGTTTTGGCGATCGGGGGGGCTGGGGGGTGTGGGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATTAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
12522970 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12523035 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12523100 GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
12523165 GCATGCCAACAAGAATACAAGGATCACGCCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
12523230 TTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACCAGTCGTGTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
**
12523295 CCATGAAACTTCACGTGAAGGCTTAAGGGACGGTTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
12523360 TGGGATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * *
12523425 ATCCCATCTCTCTGGCCGGCGTAGT----TCCCGCTCGCCCGCCCGCTCGTTTCGTCGATTGGCT
650 ATCCTGTCTCTCTGGCCGGCGTAGTGACCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * *
12523486 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGATGTGGTAGCAGGATCA
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCG
*** * * * *
12523551 GCAGCATGTAGAGGGGGACCCGGCCGAACCCTGGCTTGCGCATCCCACCCCTCTGG-CCGACTGA
780 GCAGCACACAGAGGGGGACCCGGTCGATCCC-GACTTGCGCATCCCGCCCCTCTGGCCCG-CTGA
* * * *
12523615 GCGCCCGCACGCTCGTTTCGTTGGTTGACTTACGCATACAGAGTTCATTCCCAGTTTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12523674 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGATTGCGATAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
12523739 CTCGGGTATGTGCTGGTGCTGCGGTTTTT-TTCGTCAGAGCACCATCGTCGAAGCATCGCCGGGG
66 CTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGAG
* * *
12523803 AACCTGACC-ACGGTATTGGGGTTCCGGCGA-TCGAGGGGCCGGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATTAGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
12523866 GCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12523931 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
12523996 TGGGGACTCTTTTTTCAAATGGTCAGAAAATCATGTACACTTCGAGTTTTTACCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * ** *
12524061 GTGCATTTCGAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTTCGAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
12524126 AATTTTAAAAAATCCCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12524191 AGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATGAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
12524256 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
12524321 ACATCCTGTCTATCTGGCAGGCGTAGTGCCCGGCCGCCCGCCCGCCCGCTTGTTTCGTCGATTGG
648 GCATCCTGTCTCTCTGGCCGGCGTAGTGACCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * **
12524386 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGAT
* * * * * * * * *
12524451 TGGCAGGACACAAAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTG
778 CGGCAGCACACAGAGGGGGACCCGGTCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCCCGCTG
* * * *
12524516 AGCACCCGCACGTTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12524576 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
12524641 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGAGA
* * * *
12524706 ACATGACCGACGGCATTGGGGCTCCGACGA-TCGGGGCGGCCGGGGGGGGTGTGCGCACATGATG
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATTAGGGG-GGCC--GGGGGGTGTGCGCACATGATG
* * *
12524770 TGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
12524835 ACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * **
12524900 ATGTGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * * *
12524965 TATGCATGCCAGGAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAATCACCTTCCGAAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
12525030 AAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTAAAAAATAGAAAATGAGTCCTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
12525095 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12525160 CATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12525225 CGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCACTCGTTTTGTTGGTTG
647 CGCATCCTGTCTCTCTGGCCGGCGTAGTGACCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTG
**
12525290 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAATTGTGGCAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGA
* * * * * *
12525355 TCGGTAGCACACAGAGAGGGACACGGTCGATCCCGAATTGTGCATCCCGCCCCTCTAGCCCGCTG
777 TCGGCAGCACACAGAGGGGGACCCGGTCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCCGCTG
* *
12525420 AGCGCCCGCGCGCTTGTTTCGTGGGTTGA-TATAGGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACT-TAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12525480 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * * * *
12525545 TTTTGGTATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC-GGAGA
* * * * *
12525610 ACCTGACAGATGGCATTGCGGTTACGGCGATTAGTGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATTAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12525675 GATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
12525740 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12525805 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGC-ACAAGTTTTTAGCTAAATATTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
12525869 TGCATACGAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTGAAACGCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
12525934 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
12525999 GCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTATAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12526064 TTGGCATGCAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGACTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12526129 CATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCTG-TCCGCCCGTCCACTCGTTTCGTCGATTGG
649 CATCCTGTCTCTCTGGCCGGCGTAGTGACCGCCCGCT-CGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** ** *** *
12526193 CTTAGGCATACAGAGTTCATTCCTTGTCTAAGATCAGACC-GAACTGAGGGTTACAGTAGCAGGA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTGTGGCAGCAGGA
** * * * * * * *
12526257 TCGATAGCACACAGTGGAGGACACAGTCGATCCTCGGCTTGCGCATCCCGCCGCTCTGGCCGGCT
777 TCGGCAGCACACAGAGGGGGACCCGGTCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCCGCT
*
12526322 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
12526383 GCATATGGAGTTCATTGCCAGTCTAAGATCGCACC-GACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
12526447 CTTGGGCATTTACTGGTGCCACCTTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGAGA
* * *
12526512 ACCTGACCGACGGCATTGGGGTTCCGG-TAATCGGGGGGCCAGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATTAGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* *
12526576 GGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12526641 CACCACCTTAGAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
12526706 TGGGGATACTTTTTTCAAATGGTCACAAAATGTTGTACACCTCGAGCTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** ** * *
12526771 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCACTTTTGATGCGAAAACTCCTTCTGAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
12526836 AATTTAAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
12526901 TGCCATGAAACTTCACATGATGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATAGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12526966 ATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCAGCTACCACCTTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12527031 GCATCTTGTCTCTCTGGCCGGCGTAGTGATCGCCCG-TCCGCCCGTCCGCTCGTTTCGTCAGTTG
648 GCATCCTGTCTCTCTGGCCGGCGTAGTGACCGCCCGCT-CGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
12527095 GCTTAGGCATACGGAGTTCATTCACAGTCTAACATTC-GACCGGTCCGAGGGTTGTGGCAGCAGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCAAGGGTTGTGGCAGCAGG
** *** **
12527159 ATCGGCAGCACGGAGAGTCAGACCCGGTCGATCCCCGACTTGCGCATCCCGTACCTCTGG-CCGA
776 ATCGGCAGCACACAGAGGGGGACCCGGTCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCCCG-
* * * *
12527223 CTGAGTGGCCGCACGCTCGTTCCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12527286 GCATACGGAATTAATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
12527351 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACTAT---C---G---C-CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGAGAA
* ** * *
12527406 CCTGACCGACGGCATTGAGGTTCCGATGATTAGGGGGGTC-GGGGGTGTGCGCACTTGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGGCGATTAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
12527470 ATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12527534 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
12527599 GAGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 G-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
12527663 GCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
12527728 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
12527793 CCATGACACTTCACGTGAAGGCTTAAAGGACGATTGTATGAATTTACAGGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
12527858 TGGCATGCAGAAATAGGATGATGTCCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12527923 AT-CTCGTCTCTCTGGCCGGCGTAGTGACCGCCTGTTCGCCCGTCCGCTCGTTTCGTCAGTTGGC
650 ATCCT-GTCTCTCTGGCCGGCGTAGTGACCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * ** * * * *
12527987 TTAGGCATACGGAGTTCATTTGCAGTCTAACATCCA-ACCAGACTGACGGTTCTAGCAGTAGGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGACCAAGGGTTGTGGCAGCAGGAT
** *** * ** *
12528051 CGGCAGCACGGAGAGTCAGACCCGGTCGATCCCCAGCTTGCGCATGTCGCCCCTCTGGCCGGCTG
778 CGGCAGCACACAGAGGGGGACCCGGTCGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCCCGCTG
* * *
12528116 AGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAAGCATACAGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12528176 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGATCGAGGGTTACGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
**
12528241 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCAT---C---G--T--CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGAGAA
* * *
12528296 CCTGACCGACGGCGTTGGGGTTCCGACGATTAGGGGGGCCGGGGGGTGTGCGCACTTGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGGCGATTAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
12528361 ATGGGTGGTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12528426 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12528491 AGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
12528556 CGTGCCAACAAAAATACATGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
391 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** *
12528621 TTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAACCGTGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
12528686 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGAATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
12528751 GGGATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCGACGGCTTGCGCA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
12528816 TCCCGTCTCTCTGGCCAGCGTAGTG-CCTG--C-C-CGCCCGCTCACTCGTTTCGTCGGTTGGCT
651 TCCTGTCTCTCTGGCCGGCGTAGTGACC-GCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
12528876 TAGGCATACAGTGTTCATTCGCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGGCAGCA
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTGTGGCAGCA
12528935 CATGCTGGGC
Statistics
Matches: 4669, Mismatches: 535, Indels: 114
0.88 0.10 0.02
Matches are distributed among these distances:
887 4 0.00
888 159 0.03
889 11 0.00
890 735 0.16
891 133 0.03
892 404 0.09
893 32 0.01
894 9 0.00
895 1 0.00
897 8 0.00
898 479 0.10
899 7 0.00
901 17 0.00
902 987 0.21
903 811 0.17
904 295 0.06
905 577 0.12
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATTAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCTGTCTCTCTGGCCGGCGTAGTGACCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGG
CAGCACACAGAGGGGGACCCGGTCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCCGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12526392 original size:26 final size:26
Alignment explanation
Indices: 12526352--12526409 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
12526342 CGTGGGTTGA
12526352 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
* *
12526379 CTAAGCATATGGAGTTCATTGCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
12526405 CTAAG
1 CTAAG
12526410 ATCGCACCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:12527289 original size:26 final size:26
Alignment explanation
Indices: 12527260--12527312 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12527250 GTTAACTTAG
* * *
12527260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTAATTCCCAATCTAA
12527286 GCATACGGAATTAATTCCCAATCTAA
1 GCATACGGAATTAATTCCCAATCTAA
12527312 G
1 G
12527313 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTAATTCCCAATCTAA
Found at i:12528186 original size:26 final size:26
Alignment explanation
Indices: 12528147--12528202 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12528137 TGGGTTAACT
*
12528147 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAATC
*
12528173 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATTCCCAATC
12528199 TAAG
1 TAAG
12528203 ATTGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:12529543 original size:704 final size:699
Alignment explanation
Indices: 12528176--12529632 Score: 2229
Period size: 704 Copynumber: 2.1 Consensus size: 699
12528166 CCCAGTCTAA
* * * * * * *
12528176 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGATCGAGGGTTACGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
*
12528241 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCGTCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCGCCGGAGAACCTGACCGAC
* * * * * * *
12528306 GGCGTTGGGGTTCCGACGATTAGGGGGGCCGGGGGGTGTGCGCACTTGATGTGCGATGGGTGGTG
131 GGCATTGGGGTTCAGACAATTAGGGGGGCCAGGGGATGTGCGCACATGATGTGCGATGGGTGCTG
* *
12528371 GCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
196 GCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCTAAAAG
12528436 AGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGAGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGAGACACTTTT
*
12528501 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAACA
326 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
12528566 AAAATACATGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
* *
12528631 CTCGAACCACAAAAAGTTTCAAAAACCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
456 CCCGAACCACAAAAAGTTTCAAAAACCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * ** * *
12528696 CACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGAATTGGGATGGAGA
521 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATAGAATTGCCATGCAAA
* *
12528761 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCGACGGCTTGCGCATCCCGTCTCT
586 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCGACGACTTGCACATCCCGTCTCT
* *
12528826 CTGGCCAGCGTAGTGCCTGCCCGCCCGCTCACTCGTTTCGTCGGTTGGCTTAG
651 CTGGCCAGCGTAGTGCCCGCCCGCCCG----CTCGTTTCATCGGTTGGCTTAG
* * *
12528879 GCATACAGTGTTCATTCGCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
12528944 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGAACCTGACTGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCGCCGGAGAACCTGACCGAC
*
12529009 GGCATTGGGGTTTCAG-CAATTGGGGGGGCCAGGGGATGTGCGCACATGATGTGCGATGGGTGCT
131 GGCATTGGGG-TTCAGACAATTAGGGGGGCCAGGGGATGTGCGCACATGATGTGCGATGGGTGCT
*
12529073 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCTGAAA
195 GGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCT-AAA
* *
12529138 AGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATAGG-GACACT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT-GGAGACACT
* * * * *
12529202 TTTTTCACATGGTGACAAAATCTTTTACACTTCGAGTTTTTAGCTG-ATTTTTTTTTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
12529266 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
388 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AAA
* * * * * *
12529331 AAATCCCGAACCGCCAAAGGTTTCGAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCATGAA
452 AAATCCCGAACCACAAAAAGTTTCAAAAACCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
**
12529396 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATATCATTGCCATG
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATAGAATTGCCATG
12529461 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTC-ACGACTTGCACATCCCG
582 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-TTCGACGACTTGCACATCCCG
*
12529525 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
646 TCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * *
12529579 GCATACGGCGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGCTTGTGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAG
12529633 TAGGATCGGC
Statistics
Matches: 683, Mismatches: 66, Indels: 13
0.90 0.09 0.02
Matches are distributed among these distances:
700 69 0.10
703 298 0.44
704 311 0.46
705 5 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (699 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCGCCGGAGAACCTGACCGAC
GGCATTGGGGTTCAGACAATTAGGGGGGCCAGGGGATGTGCGCACATGATGTGCGATGGGTGCTG
GCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCTAAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGAGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCACAAAAAGTTTCAAAAACCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATAGAATTGCCATGCAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCGACGACTTGCACATCCCGTCTCT
CTGGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:12529774 original size:26 final size:26
Alignment explanation
Indices: 12529738--12529790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12529728 GTTGACTTAG
12529738 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
12529764 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
12529790 G
1 G
12529791 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:12530256 original size:885 final size:888
Alignment explanation
Indices: 12528879--12534874 Score: 6727
Period size: 904 Copynumber: 6.8 Consensus size: 888
12528869 GTTGGCTTAG
* * *
12528879 GCATACAGTGTTCATTCGCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* * *
12528943 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATC-GC--CGGAGAACCTGAC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCATCATCAGAGAACCTGAC
* * * * * * *
12529005 TGGCGGCATTGGGGTT-TCAGCAATTGGGGGGGCCAGGGGATGTGCGCACATGATGTGCGATGGG
130 CGACGGCATTGGGGTTCT-GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12529069 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
12529134 GAAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
259 -TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
12529199 ACTTTTTTCACATGGTGACAAAATCTTTTACACTTCGAGTTTTTAGCTG-ATTTTTTTTTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
12529263 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* ** * * *
12529328 AAAAAATCCCGAACCGCCAAAGGTTTCGAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCAT
453 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* ** *
12529393 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATATCATTGCC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
12529458 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGACTTGCACATCC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
12529523 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGC
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * *
12529588 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGCTTGTGGCAGTAGGATCGGCAGCACGCAGA
713 GTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* *
12529653 GGGGGTCCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
778 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
12529718 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAA
843 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12529764 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12529829 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCA-C-T-AGAGATCCTGACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCATCATCAGAGAACCTGACC
* *
12529891 GACGGCATTGGGGTTCTGGTGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
12529956 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCTCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
12530021 AACAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACTCT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* ***
12530086 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTGTGCGCACCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
12530151 ACAAAAATAGAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
*
12530216 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
456 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
12530281 ACATCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCATG
521 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
12530346 CAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
586 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
12530411 CTCTCTGGCCGGTGTAGTGCCTGCCTGCCCTCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGCAT
651 CTCTCTGGCCGGCGTAGTG-C--CC-G----CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * ** ** * * * *
12530476 ACAGAGTTCATTCCCTA-TCTAAGATTGGATTGGAA-TAAGGGTTGCAGCAGCAAGATCAGCAGG
708 ACGGAGTTCATTCCC-AGTCTAAGATCGGA-CCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * ** * *
12530539 ACGTAGAGTGGGACCCGATCGATCCCCTACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCTC
771 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
12530604 GCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
836 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12530653 -C-TA---AG---------A-TC----A---GACCAGACCGAGGGTTTCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12530696 CTCAGACATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCTTCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCA-C--CATC--ATCATCA---GAGA
* * * * * *
12530761 ACCTGACCGACGACATTGGGTTTCCGACGATCGAGGAGGCCGGGGGGGTGTGCGCACATGATGTG
123 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * *
12530826 CAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAGCCTCGAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12530891 ACCCCCTTAAAAAGCACTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12530956 GGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATGTTTTTG
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12531021 TGCATGCCAA-AAAAAGTACAAGGATCAAGTTTACCAAGTTTGGGGCCAAAACGT--TTTCTGAA
382 TGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTTC-GAA
* *
12531083 AAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
444 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
12531147 TCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAGAAT
509 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12531212 GGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
574 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
12531277 CGCGCATCCCGTCTCTCTGGCCGGGGCAGTGCCCGCGCGCCCTCTCGCCCGTTCGTTTCATCGGT
639 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CG--C-C-CGCCCGCTCGTTTCATCGGT
* * * *
12531342 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATC-AGACCGAGGGTTGTGGCAGCA
696 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCA
* * * *
12531406 AGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCG
760 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
12531471 GCTGAGCGCTCGTACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
825 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12531535 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
12531600 CTTGGGCATGTCCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGTCGGAGCATC-GTTTCAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCA---TC--ATCATCAG----AG
* * *** *
12531664 AACCTGACCGGCAGCATTGGGGTTCCAACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
122 AACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGT
*
12531729 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * **
12531794 CACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTAG-CAGGAGCTGTTAAAGTGTCTGAA
251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAA
* *
12531858 ATGGGGACATTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTT-GCTGAATTTTTT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
12531922 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC--T-AAAA
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * *
12531984 AAATTTT-AAAAAATCTGGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCAT
445 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
12532048 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * *
12532113 GCATTGCCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTT
575 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*** * *
12532178 GCGCATCCCGTCTCTCTGGCCAATGTAGTCCCCGCCCGCCCACCCGCCCACCCGTTCGTTTCCTC
640 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG----CCCG----CCCGCTCGTTTCATC
* * * * * *
12532243 AGTTGGCTTAGGCATACGGAGTTCATACCCAGTCTAACATCGGATC-AGACTGAGTGTTGCGGCA
693 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCA
* * * * * * * * *
12532307 GTAGCATCGGCAGCACACAGAGGGGGACCTGATCGATCCTCGACTTACGCATCCTGCCCCTCTGG
757 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
12532372 CCGGTTGAGCGCCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
822 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
12532437 AA
887 AA
* * * *
12532439 G-ATACGGAGTTCATTTCCAGTCTAAGATCGAACCAGACCGAGTGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * * * *
12532503 CTTGGGAATGTGCTGGCGCCTCATTTCTCTTCGCTGGGACACTATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGG--GC-A-C--C--ATCATCATCAGAGA
* * *
12532568 ACCTGACCGACGGCATTGAGGTTCTGGCGATTGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
123 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
12532633 CGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCTCTATCCCTAATCAAACCTCGAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * * * *
12532698 ACCCCCTTAAAGAATATTTGAGATTTTATAGGTTTTGTTGCTAGTAGCCATTAAAGTG-ATAAAA
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12532762 TGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTT
316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12532827 GTGCATGCCAACAAAAATATAAGGATCATC-TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
381 GTGCATGCCAACAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * *
12532891 AAA-TTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCCT
445 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
12532955 CTTGCCATGAAACTTCACATGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * **
12533019 GTATTGGCACGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTCCCG--CC-C-GC--
575 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * *** ** * * * ** * *
12533078 CCGC-T--CGT-TCTTTCGGTTGGCTTAG-G--CATACG-GAGTTCATTCCCAGTC--TAAGATC
640 GCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTT-TCA-TCGGTTGGCTT
* ** * * * *
12533133 AGACCGAATGA-GG-GTTGCGGT---AG-C-AGGATC-GACAGCA-CGCAGAGG--G-GG-A-CC
702 AG---GCAT-ACGGAGTT-CATTCCCAGTCTAAGATCGGACCGAACCG-AG-GGTTGCGGCAGCA
* * * * * ** * * ** * * * *
12533184 CGA-CCG-ATC-CCCGGCTTGCGCATCCC-ACCCCTCTGGCCTG-TTGCGC-GCCCGCACGCTCT
760 GGATCGGCAGCACGCAG-AGGGGGA-CCCGACCGATC--CCCGGCTTGCGCATCCCGC-CCCTC-
** * * **** ** ***** * *
12533243 TTTCGTGGTTTGA-CTTAGGCATACG-GAG-TTCATTCCCAGTC-TAAGCATACGGAGTTCATTC
819 TGGC-CGG-CTGAGCGCCCGC--ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
12533304 CCAG--T--
880 CCAGTCTAA
* * *
12533309 G--TA---AG---------A-TC--AGAT-----CAGACCGAGGGTTACGGCAGTAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** *
12533352 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACAATTGCCAGAGCATCATCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGG--C-A---CC--ATCATCATCAGAGA
* *
12533417 ACCTTACCG-CGGCATTGGGGTT-TCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
123 ACCTGACCGACGGCATTGGGGTTCT-GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
12533480 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12533545 ACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12533610 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
12533675 TGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTAGGGCCAAAAGTCCATTT-GAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTCGAAAA
* * * *
12533739 AATTTTAAAAAACTCTCGAACCGTAAAAAGTTTCTAAAATCCTAAAAAATAGAAAACGAGTCGTC
446 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12533804 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12533869 CATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTA
576 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
12533934 CGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
641 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * * *
12533999 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACAGGATAGG
702 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGG
* * * * *
12534064 CAGCACGTAGAGGGGGACCCGGCTGATCCCTGGCCTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
767 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
12534129 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
832 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * ** * *
12534186 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGGCTGTGATAGCACATTCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12534251 CTCGAGCATGTGCTGGTGTCACATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCA---T-----CATCATCAGAGA
* * * * * *
12534316 ACCTGACCGACAGCATTAGGGTTTTGGTGATC-GGGGGGCCGGGGGGTGTGCACACAAGATGTGC
123 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12534380 AATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12534445 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAATTG
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
12534510 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12534575 GCAAGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATTT-GAAAAA
383 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTCGAAAAA
*
12534639 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
447 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
12534704 TGACATGAAACTTCACGTGAAGGCTTAAGGGATCGTTGTATGAATTTACAACCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12534769 ATTGGAATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
577 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12534834 GTATCCCATCTCTCTGGCCAGCGTAGTGCCCGACCGCCCGC
642 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
12534875 CTGCCCGTTC
Statistics
Matches: 4326, Mismatches: 571, Indels: 418
0.81 0.11 0.08
Matches are distributed among these distances:
846 24 0.01
847 236 0.05
848 105 0.02
849 164 0.04
851 3 0.00
852 1 0.00
853 2 0.00
854 4 0.00
855 3 0.00
856 3 0.00
857 1 0.00
858 10 0.00
859 4 0.00
862 1 0.00
863 8 0.00
864 5 0.00
865 4 0.00
866 14 0.00
867 68 0.02
868 8 0.00
869 9 0.00
870 11 0.00
871 8 0.00
872 27 0.01
873 43 0.01
874 43 0.01
875 26 0.01
876 12 0.00
877 10 0.00
878 439 0.10
879 262 0.06
880 3 0.00
881 13 0.00
882 3 0.00
883 6 0.00
884 112 0.03
885 498 0.12
886 5 0.00
887 4 0.00
888 3 0.00
889 1 0.00
890 1 0.00
891 3 0.00
892 3 0.00
893 177 0.04
894 8 0.00
895 13 0.00
896 6 0.00
897 11 0.00
899 552 0.13
900 231 0.05
901 5 0.00
902 8 0.00
903 344 0.08
904 575 0.13
905 4 0.00
906 92 0.02
907 84 0.02
908 1 0.00
909 1 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCATCATCAGAGAACCTGACC
GACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12531539 original size:26 final size:26
Alignment explanation
Indices: 12531509--12531561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12531499 GTTAACTTAG
12531509 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
12531535 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12531561 G
1 G
12531562 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12532443 original size:25 final size:25
Alignment explanation
Indices: 12532415--12532466 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
12532405 TGACTTAGGC
12532415 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
*
12532440 ATACGGAGTTCATTTCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12532465 AT
1 AT
12532467 CGAACCAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
ATACGGAGTTCATTCCCAGTCTAAG
Found at i:12533297 original size:26 final size:26
Alignment explanation
Indices: 12533261--12533313 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12533251 TTTGACTTAG
12533261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12533287 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12533313 G
1 G
12533314 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12536304 original size:894 final size:885
Alignment explanation
Indices: 12534911--12537811 Score: 3652
Period size: 894 Copynumber: 3.3 Consensus size: 885
12534901 TAGGCATACA
* * * * * * *
12534911 GAGTTTATACCCAGTCTAAGAGC-AGATCAGACTGAGGGTTGTGGCAGCACATGCTAGGCTTGGG
1 GAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGG
12534975 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--TC--AGC-TCG--G-AGAACCTGA
** * *
12535040 CCGGTGGCATTAGGGTTCC-AGCGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATT
122 CCGACGGCATTAGGGTTCCGA-CGATCG-GGGGGCCGGGGGGGTGTGCACACATGATGTGCGATG
* * * *
12535103 GATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAATAACTCAAACCCC
185 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
12535168 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTTTGAAATGGGGA
250 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
* *
12535233 CACTTTTTTCAAATGGACACAAAATCTTGTACACTTTGAGTTTTTAGCTGAACGTTTTTGTGCAT
315 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCAT
* *
12535298 G-GAAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
380 GCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
12535362 TAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
444 TAAAAAATCTCGAAACGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
12535427 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
509 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
12535492 CGCATAGAAATATGGAAGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTTGCGCAT
574 CGCATAGAAATAT-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
12535556 CCGTCTCTTCTGGCCGGCATAATGCCCG-CAGCCCGT-TCATTTCGTCGGTTGGCTTAGGCATAC
638 CCGTCTCTTCTGGCCGGCGTAATGCCCGCCCGCCCGTCTCATTTCATCGGTTGGCTTAGGCATAC
* *
12535619 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAACAGGATAGGCAGCACGT
703 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAGGATCGG-AGCACGT
*
12535684 AGAGGAGGACCCGGCTGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAC
767 AGAGG-GGACCCGGCCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAC
*
12535749 GCTCATTTCGTGGGTTGACTGAGGCATACGAAGTTCATTCCCAGTCTAAGCATATG
831 GCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA-G
* *
12535805 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGCTGTGACAGCACATTCT-GAGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGACAGCACATGCTAG-GCTCGGG
** * * *
12535869 CATGTGCTGGTTTCACATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--TC--AGC-TCG---GAGAACCTGA
* * ** *
12535934 CCGGCAGCATTAGGGTTTTGGCGATCGGGGGGCCGGGGGGGTGTGCACACGA-GATGTGCGATGG
122 CCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACAC-ATGATGTGCGATGG
* * *
12535998 GTGCTGGTACTTGGACCTTATATTGGCCCCCTAGCCCTCATCAAACCTCGACAACTCACACCCCC
186 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
12536063 TTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGAAATGGGGAC
251 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
* * *
12536128 ACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
316 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATG
** * * *
12536193 CCAAAAAAAATACAAAAATCACGTCTACCAAGTTTGGGGTCAAAACTTCTTCCAAAAAAATTTTA
381 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
12536258 AAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATT
446 AAAAATCTCGAAACGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATG
*
12536323 AAACTTCATGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
511 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--
* *
12536388 CGCA-A-AAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
574 CGCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-
* * *
12536451 CCGTCTCTT-TGGTCGGCGTAATGCCCGCCCGCCCGCTCACTCGTTTCATCGGTTGGCTTAGGTA
638 CCGTCTCTTCTGGCCGGCGTAATGCCCGCCCGCCCG-T--CTCATTTCATCGGTTGGCTTAGGCA
* *
12536515 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGTGGCAGCAAGATCGGTAGCA
700 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAGGATCGG-AGCA
* * * * * * * *
12536580 CGCAGAGGGGAACTCGACCGATCTCTGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCTG
764 CGTAGAGGGG-ACCCGGCCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCG
*
12536645 CATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC----C--A-
828 CACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAG
* * * *
12536696 -AG---------A-TC----A--G-ACCAGACCGAGCGTTGTGACAGCACATGTTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGC
* * *
12536743 ATGTGCTGGTGCCGTATTTTTGTTCGTCGGGGCACCA-TC-G-TCGGAGAACCTGACCGACGGTA
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCAGCTCGGAGAACCTGACCGACGGCA
* * ** * * *
12536805 TT-GCGGTTCCGACGATCGGGGGTATCGAGGGGGGGTGTGTGCACGTGATGTGTGATTGGTGCTG
131 TTAG-GGTTCCGACGATCGGGGG--GC-CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
12536869 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
192 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
12536934 AGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTT
257 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTT
*
12536999 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
322 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAA
* * * *
12537064 AAAGTACAAGGATCACGGCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAAT
387 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
12537129 CTCGAAACGTAAAAAGTTTTGAAAATCGTGAAATATGGAGAACGAGTCGTCTTGCCATGAAACTT
452 CTCGAAACGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
12537194 C------A---TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-G-GCATGCA
517 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCAT--A
* * * *
12537248 GAAATATGAAGATGTGCCTAAAACTACCTACCACCCTATCGATCCACGGCTTGAGCATCTTGTCT
580 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC-CGTCT
* * * * *
12537313 C-TCTGGCCAGCGTAGTGCCTGCCTGCCCGTCCACTCTCTCTTTTCATCGATTGGCTTAGGCATA
644 CTTCTGGCCGGCGTAATG-C--CC-GCCCG-CC-C-GTCTCATTTCATCGGTTGGCTTAGGCATA
** * * * *
12537377 CGGAGTTCATTCCCAGTCTAAGATTGGACAAGACC-AAGGGTTGCGGTAGC-GAGATCGGTGACA
702 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTGTGGCAGCAG-GATCGGAG-CA
* * * * *
12537440 AGTAGAGGGTGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCACCCA
764 CGTAGAGGG-GACCCGGCCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCG
** *
12537505 CACATTCATTTTGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACG
828 CACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATA-G
* * * ** *
12537564 GAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGGCAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGC
** *
12537629 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTGCCATT-A-C-CGAAGAACCTGACCGACGGCA
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCAGCTCGGAGAACCTGACCGACGGCA
* * * *
12537691 TTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTA
131 TTAGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
*
12537756 CTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCC
195 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
12537812 CTATATTGGC
Statistics
Matches: 1742, Mismatches: 193, Indels: 154
0.83 0.09 0.07
Matches are distributed among these distances:
852 3 0.00
855 4 0.00
856 111 0.06
857 1 0.00
859 7 0.00
860 171 0.10
861 4 0.00
862 35 0.02
864 2 0.00
865 330 0.19
866 1 0.00
867 1 0.00
869 2 0.00
870 2 0.00
873 63 0.04
874 2 0.00
876 1 0.00
878 1 0.00
879 2 0.00
880 2 0.00
881 1 0.00
883 1 0.00
884 88 0.05
885 2 0.00
886 96 0.06
887 7 0.00
890 2 0.00
893 32 0.02
894 557 0.32
895 23 0.01
896 5 0.00
898 2 0.00
899 181 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCAGCTCGGAGAACCTGACCGACGGCA
TTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
AAACGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCATAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTCTTCTGG
CCGGCGTAATGCCCGCCCGCCCGTCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAGGATCGGAGCACGTAGAGGGGACCCGGC
CGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAG
Found at i:12537567 original size:26 final size:26
Alignment explanation
Indices: 12537531--12537583 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12537521 GTTGACTTAG
12537531 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12537557 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12537583 G
1 G
12537584 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12538053 original size:26 final size:26
Alignment explanation
Indices: 12538017--12538069 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12538007 GGTTGCTTAG
12538017 GCATACGGAGTTCA-ACGCCAGTCTAA
1 GCATACGGAGTTCATAC-CCAGTCTAA
*
12538043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
12538069 G
1 G
12538070 ATCGAACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:12541533 original size:720 final size:713
Alignment explanation
Indices: 12539663--12541854 Score: 3149
Period size: 720 Copynumber: 3.1 Consensus size: 713
12539653 TAAGCATATA
* * * * * * * *
12539663 GAGTTCATTCCTAGTATAACATCGGACCAGACTGAGAGTTGC-GGAAGCACATGCTAGGCTTTGG
1 GAGTTCATTCCCA-TCTAAGATCGGACCGGACTGAGGGTT-CTGGCAGCACATGCTGGGCTCTGG
* * * * * * * *
12539727 CATGTGCT-GTGTCGTATTTTTTTTCACCGAGGAACCATCATCGAAGCATCACTAGAGAACCTGA
64 CATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCAC-GGAGAACCTGA
*
12539791 CCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGCGCGATGGG
128 CCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
12539856 TGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
12539921 TAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGTGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
12539986 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
* *
12540051 CAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
388 C-AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
12540116 AAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATT
452 AAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
12540181 AAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCA
517 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
12540246 TGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCAAGGCTTGCGCATCCC
582 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
12540311 ATCTCACTGGCCGGCATAGT----GCCCG-CC-T--G--CTCATTTCGTCGGTTGGCTTAGGCAT
647 GTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGTCCGCCCTCGTTTCGTCGGTTGGCTTAGGCAT
*
12540366 ATG
711 ACG
* * * *
12540369 GAGTTCATTACCAATCTAAGATCGGACCGGA-TCGAGGCTTCTGGCAGAACATGCCGGGCTCTGG
1 GAGTTCATT-CCCATCTAAGATCGGACCGGACT-GAGGGTTCTGGCAGCACATGCTGGGCTCTGG
* * * *
12540433 CATGTGCTGGT-CCGCATTTTTCTTCGTCGGGGCATCATCGTCGGACCATCACCGGAGAACCTGA
64 CATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCA-CGGAGAACCTGA
** * * * * *
12540497 CCGTTGGTATTAGGGTTCCGGTGATCAGGGGGCCGGGGGAGGGTGTGCACACATGATGTGCGATA
128 CCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCC-GGGG-GGGTGTGCGCACATGATGTGCGATG
*
12540562 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
12540625 CTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
12540690 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGCTTTTGTGCAT
321 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAT
* * *
12540755 GCCAACAAAAATACAAGGATCATGGCTTCCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTT
386 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
12540820 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
451 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
12540885 GAAACTTCACATGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
516 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
12540950 ACGTAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCA
581 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
12541015 CGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGTCCGCACACTCGTTTCGTCGGTTGGCTCAGG
646 CGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGTCCGC-C-CTCGTTTCGTCGGTTGGCTTAGG
12541080 CATACG
708 CATACG
* * *
12541086 GAGTTCATTCCCATCCTAAGATCGGACTGGACTGAGGGTTGC-GGCAGCACATGCTGGGGTCGGG
1 GAGTTCATTCCCAT-CTAAGATCGGACCGGACTGAGGGTT-CTGGCAGCACATGCTGGGCTCTGG
* * *
12541150 CATGTGCTGGTGCCGTAATTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
64 CATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATC-ACGGAGAACCTGA
* * ** *
12541215 CTGGCGGCATTGGGGTTTCGACGATCGGGGGTGCCAGGGGGGGTATGCGCACATGATGTGCGATG
128 CCGGCGGCATTGGGGTTCCGGTGATCGGGGG-GCC-GGGGGGGTGTGCGCACATGATGTGCGATG
*
12541280 GGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
12541345 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
12541410 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAT
321 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAT
*
12541475 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT
386 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* **
12541540 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
451 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
** ** *
12541605 GAAACTTCATGTGAAGGCTTAAGGGACTGTAGTATGAATTTACAAGCCATAAAAATGGCATTGGC
516 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
12541670 ATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGGTTGCGCATCC
581 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
12541735 CGCCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTCCGTCGGTTGGCTTTGG
646 CGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCCCGTCCG-CC-CTCGTTTCGTCGGTTGGCTTAGG
12541800 CATACG
708 CATACG
* * * *
12541806 GAGTTCATTCCCAGTCTGAGATTGGACTGGATTGAGGGTTCTGGCAGCA
1 GAGTTCATTCCCA-TCTAAGATCGGACCGGACTGAGGGTTCTGGCAGCA
12541855 GGATTGCTGG
Statistics
Matches: 1322, Mismatches: 133, Indels: 48
0.88 0.09 0.03
Matches are distributed among these distances:
705 255 0.19
706 249 0.19
707 41 0.03
708 49 0.04
709 5 0.00
710 2 0.00
711 1 0.00
713 1 0.00
716 4 0.00
717 85 0.06
718 117 0.09
719 41 0.03
720 470 0.36
721 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (713 bp):
GAGTTCATTCCCATCTAAGATCGGACCGGACTGAGGGTTCTGGCAGCACATGCTGGGCTCTGGCA
TGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACGGAGAACCTGACCG
GCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGCGTAGTGCCCGCCCGCCCGTCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACG
Found at i:12542010 original size:26 final size:26
Alignment explanation
Indices: 12541958--12542010 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12541948 GTTGACTTAG
*
12541958 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12541984 GCATACGGAGTTCATTCCTAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12542010 G
1 G
12542011 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12546029 original size:26 final size:26
Alignment explanation
Indices: 12545999--12546048 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12545989 GTTGACTTAG
*
12545999 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACGAAGTTCATTCCCAGTCTGA
12546025 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
12546049 AAGATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTGA
Found at i:12547076 original size:26 final size:26
Alignment explanation
Indices: 12547045--12547094 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12547035 GACTTAGGCG
*
12547045 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
*
12547071 TACGGAGTTCATTCCTAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
12547095 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:12548639 original size:26 final size:26
Alignment explanation
Indices: 12548609--12548659 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12548599 GTTGACTTAG
12548609 GCATAC-AGACTTCATTCCCAGTCTAA
1 GCATACGA-ACTTCATTCCCAGTCTAA
*
12548635 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAACTTCATTCCCAGTCTA
12548660 GGATCGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:12550211 original size:26 final size:26
Alignment explanation
Indices: 12550175--12550251 Score: 154
Period size: 26 Copynumber: 3.0 Consensus size: 26
12550165 GTTGACTTAG
12550175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12550201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12550227 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12550252 TGATTGGATC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12551104 original size:897 final size:882
Alignment explanation
Indices: 12549330--12551559 Score: 2873
Period size: 897 Copynumber: 2.5 Consensus size: 882
12549320 GTTGGCTTAG
* ** * *
12549330 GCATACGGAGTTCACTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAGCACATGCTGGG
* *
12549395 CTCGGGCATGTGCTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGTCAGAGA
* * * *
12549459 ACCTGACCGGGGGCATTGGGG-TTCTGGCGATCAGGGGGGCCGGAGGGGTGTGAGCACATAATGT
131 ACCTGACCGGCGGCATTGGGGTTTC-GGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGT
*
12549523 GCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
12549588 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * ** * **
12549652 TGGGGACATTTTTTTGAAACGAACACAAAATCTTGTACCCTTCGAGTTTGCAGCTGAATTTTTTT
324 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12549717 ATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATTTTGCAAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATTTTCCAAAAA
* *
12549782 AATTTAAAAAATCTCAAGCTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTT
454 AATTTAAAAAATCTCAAGCCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
** * * * *
12549847 GGCATGAGACTTCACGTGACGACTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCA
519 ACCATGAAACTTCACGTGAAGACTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12549912 TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATAAGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCG
* * * *
12549977 CATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCATTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTACCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * * *
12550042 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGCAGCACGTAGAGGGGGACCCGACCGATC
714 GCATACGAAGTTCATTCCCAGTCCAAGATTGGACCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * *
12550107 CCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCTCGCACGCTCATTTTGTGGGTTGACT
779 CCCGGCTTGCGCATCCCACACCTCTCGCCGGCTGAGCGCCCGCACGCTC----TGT--GTT-ACG
12550172 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
837 TAGGCATAC-GA--TCATT--CAG----AGCATACGGAGTTCATTCCCAGTCTAA
* * *
12550227 GCATACGGAGTTCATTCCCAGTCTATGATTGGATCAGACCGAGGGTTACAGTAGCAGC-TGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAGCA-CATGCTGG
* * *
12550291 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATTGTCGGAGCATGGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGTCAGAG
12550356 AACCTGACCGGCGGCATTGGGGTTTCGGC-ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* ** *
12550420 CGATGGGTGCTGGTACTTAGCCCTTATATTGGAACCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
12550485 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12550550 TGGGACACTTTTTTCAAATGGTCACCAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTG
325 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12550615 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCC-AAA-ATTCCTTCCCAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATT--TTCCAAAA
* *
12550678 AATTTTAAAAAATCTCGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTAAAAAATCTC-AAGCCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12550742 TTACCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTACCATGAAACTTCACGTGAAGACTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12550807 CATTGGCACATAGAAATAAGAAGCTGTGCCTAAACCCACCTACGACCCTATCAATCCACAGCTTG
582 CATTGGCACACAGAAATAAGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTG
* * *
12550872 CGCATCCCGTCTCTCTGGCCGGTGTAGTACCCACCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTACCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTT
12550937 AGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGG
712 AGGCATACGAAGTTCATTCC----C--AG-T----CCA-A--GA---TT--GG-A-C-----CGG
* * ** *
12551002 CAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGTGCATCCTGCACCTCTCGCCGGTTGAGC
751 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACACCTCTCGCCGGCTGAGC
*
12551067 GCCCGCACGCTC-GT-TT-CGT-GG-GTA-GA-C-TT-AG-GCATACGGAGTTCATTCCCAGTCT
816 GCCCGCACGCTCTGTGTTACGTAGGCATACGATCATTCAGAGCATACGGAGTTCATTCCCAGTCT
12551122 AA
881 AA
** * * * *
12551124 GCATACGGAGTTCATT-CTTGTCTAAGATCGGACCGGACCGAGGGTTTCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * ** * * *
12551188 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAAGGCACCACTATCAGAGCATCGTC-GAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGTCAG-AG
* * * * * * *
12551252 AACTTGACCGACGGCATTAGGGTTCCGACGATCGGTGGGGCCGAGGGGGGTGTGCACACATGATG
130 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
* *
12551317 TGCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * *
12551382 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGTCGTTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12551447 A-TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTT
323 ATTG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
12551511 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGC
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
12551560 TTAAGGGACC
Statistics
Matches: 1172, Mismatches: 122, Indels: 76
0.86 0.09 0.06
Matches are distributed among these distances:
895 5 0.00
896 195 0.17
897 559 0.48
898 64 0.05
899 247 0.21
901 1 0.00
902 2 0.00
903 2 0.00
904 1 0.00
905 2 0.00
906 1 0.00
908 2 0.00
909 3 0.00
911 4 0.00
912 2 0.00
913 2 0.00
914 2 0.00
915 2 0.00
916 2 0.00
917 1 0.00
918 3 0.00
923 70 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGTCAGAGA
ACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATT
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATTTTCCAAAAAAA
TTTAAAAAATCTCAAGCCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTAC
CATGAAACTTCACGTGAAGACTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATAAGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTACCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
ATACGAAGTTCATTCCCAGTCCAAGATTGGACCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
CGGCTTGCGCATCCCACACCTCTCGCCGGCTGAGCGCCCGCACGCTCTGTGTTACGTAGGCATAC
GATCATTCAGAGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12553287 original size:4 final size:4
Alignment explanation
Indices: 12553278--12553308 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
12553268 CCGGCGTAGT
*
12553278 GCCC GCCC GCCC GCCC GCCC GCTC GCCC GCC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCC
12553309 TACTCGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.71, G:0.26, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:12554325 original size:171 final size:171
Alignment explanation
Indices: 12553969--12554325 Score: 500
Period size: 171 Copynumber: 2.1 Consensus size: 171
12553959 ATCGATCCAG
* *
12553969 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCTACCCGCCCACCCGCTCGTTTCGT
1 GGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCACCTACCCGCCCACCCGCTCGTTTCAT
* * *
12554034 CAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGATCAAGGGTTGGGGCA
66 CAGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTTGGGACA
* * * * *
12554099 GCAGGATCGGCAGCATACAGAGGGGGACCCAGTCGATCCCC
131 GCAGGAACGGCAGCACACAAAGGGGGACCCAGCCAATCCCC
* * *
12554140 GACTTGTGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCACCTACCCGCCCGCCCGCTCGTTTCAT
1 GGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCACCTACCCGCCCACCCGCTCGTTTCAT
* * *
12554205 CAGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGAGT-GAGGGTTGTGAC
66 CAGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGA-TCAAGGGTTGGGAC
* * * * *
12554269 CGCAGGAACGGTAGCACGCAAAGGGGGACCCGGCCAATCCCT
130 AGCAGGAACGGCAGCACACAAAGGGGGACCCAGCCAATCCCC
*
12554311 GGCTTGCACATCCCG
1 GGCTTGCGCATCCCG
12554326 CCCCTCTGGC
Statistics
Matches: 161, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
171 160 0.99
172 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (171 bp):
GGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCACCTACCCGCCCACCCGCTCGTTTCAT
CAGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTTGGGACA
GCAGGAACGGCAGCACACAAAGGGGGACCCAGCCAATCCCC
Found at i:12554413 original size:26 final size:26
Alignment explanation
Indices: 12554377--12554427 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12554367 TTGACTTAGG
*
12554377 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAATCTAAA
*
12554403 CATATGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
12554428 GATCGTACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAA
Found at i:12555312 original size:26 final size:26
Alignment explanation
Indices: 12555283--12555335 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12555273 GTTGACTTAG
* *
12555283 GCATAAAGAGTTCATTTCCAGTCTAA
1 GCATAAAGAGTTCATTCCCACTCTAA
**
12555309 GCATACGGAGTTCATTCCCACTCTAA
1 GCATAAAGAGTTCATTCCCACTCTAA
12555335 G
1 G
12555336 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCACTCTAA
Found at i:12556218 original size:26 final size:26
Alignment explanation
Indices: 12556188--12556238 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12556178 TGACTTAGGC
12556188 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
12556214 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12556239 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:12556631 original size:893 final size:895
Alignment explanation
Indices: 12554131--12557816 Score: 4738
Period size: 893 Copynumber: 4.1 Consensus size: 895
12554121 GGGGACCCAG
* * * * * * * * **
12554131 TCGATCCCCGACTTGTGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCACCTACCCGCCCGCCCGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGCCCGCCCGC
* * * *
12554196 TCGTTTCATCAGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGAG-TGAG
66 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAGCTGAG
* * * * ** *
12554260 GGTTGTGACCGCAGGAACGGTAGCACGCAAAGGGGGACCCGGCCAATCC-CTGGCTTGCACATCC
130 GGTTGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACCCAACCGATCCTC-GGCTTGCACATCC
* * *
12554324 CGCCCCTCTGGCCGGCTGAGCGCTCGGACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
194 CGCCCCTCTGGCCGGCTGAGCGC-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * ** * ** **
12554389 ATTCCCAGTCTAAACATATGGAGTTCATTCCCAATCTAAGATCGTACTGGATCGAGGGTTGTGGT
258 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGAC
* * ** *
12554454 AGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGA
323 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC-G-
* * * ** * **
12554519 GCATCGCCGGAGAACCTAATTGGCAGCATTGGGGTTCCCG-CGATCGGGGGGGTCGGGGGGGTGT
383 G-AT--CCGGAGAACCTTACTGGCGGCATTGGGGTT-CCGACGATCGAAGGGGCCGGGGCAGTGT
12554583 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
444 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
12554648 CCTCGAGAACTCACACCCCCTTAAACACCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATT
509 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
12554713 AAAGTGTCT-AAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTA
574 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTA
** * * *
12554777 GCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGGT-TACCAAGTTTGGGGCCAAA
639 GCCAAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGGCCAAA
* * * * *
12554841 ACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAGTCATGAAAAATAA
703 ACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
12554906 AAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGGATTTACAA
768 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
12554971 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
833 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
12555034 TTGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTG-CCAGCCCGCCCGCCCGCCCG
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACC-GCCCGCCCGCCCGCCCG
*
12555098 TCCACTCGTTTCATCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGA
65 ----CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAG-
** * * * *** **
12555162 CTGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAAAGGGGGACTCGGTCGATCCTCGGCTTGTGC
125 CTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACCCAACCGATCCTCGGCTTGCAC
* * * * * **
12555227 ATCTCGCCACTCTGGCCGGCTGAGCGCCTGCATGCTCGTTTCGTGTGTTGACTTAGGCATAAAGA
190 ATCCCGCCCCTCTGGCCGGCTGAGCGCC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
12555292 GTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATC-AGACCGGACCGAGGGTT
254 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTT
* * * * * **
12555356 GC-AGCAGCACATGCTTGGCTCAGGCATGCGCTGGTACCGCATTTTTCTTCGTCGGGGCACCATC
318 ACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT-
* *
12555420 GCTGGAGCATCGCCGGAGAACCTGA-TGGGCGGCATTGGGGTTTCGACGATCGGAA--GGCCGGG
381 -C--G-G-AT--CCGGAGAACCTTACT-GGCGGCATTGGGGTTCCGACGATC-GAAGGGGCCGGG
** * * *
12555482 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCT
437 GCAGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
12555547 CATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGGTTGTACAGGTTTGCTGCCAGT
502 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
12555612 AGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGT
567 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGA
* * * * *
12555677 GTTTGTAGCCAAAATATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTCGG
632 GTTTTTAGCCAAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
12555742 GCCAAAACTCCTTCCGAAATAATTTTAAAAAATCCAGAACCGTAAAAAGTTTAAAAAATCATGAA
697 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAA
*
12555807 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATT
762 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
12555872 TTATAAGCCATAAAAATGGCATTGG-A-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
827 TTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACC
12555935 ACCCTA
890 ACCCTA
* *
12555941 TCGATCCACGGCTTGGGCATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCACCCGCCCGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGCCCGCCCGC
* * * * * *
12556006 TCGTTTCATCAGTTGGCTTAGGCATATGTAGTTCATTCCTAGTCTAAGATCGGATCGAGCTGAGG
66 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGCTGAGG
* * * *
12556071 GTTGC-AGCAGTAGGATCGGCAGCACGCAGAGGGAGACCCAACCGATCCTCGGCTTGCATATCCC
131 GTTGCGA-CAGCAGGATCGGCAGCACGCAAAGGGGGACCCAACCGATCCTCGGCTTGCACATCCC
*
12556135 GCCCCTCTGGCCGGTTGAGCGCCGCCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
195 GCCCCTCTGGCCGGCTGAGCGCCG-CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
*
12556200 TTCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACA
259 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACA
12556265 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-G-T-CG
324 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGGATCCG
* * *
12556327 GAGAACCTTACTGGCGGTATTGGGGTTCTGACGATCGAAGGGGCCGGGGCAGTGTGCGCGCATGA
389 GAGAACCTTACTGGCGGCATTGGGGTTCCGACGATCGAAGGGGCCGGGGCAGTGTGCGCACATGA
* * *
12556392 TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
454 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
12556457 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GACAATTAAAGTGTCT
519 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCT
12556521 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCCAAAATT
583 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCCAAAATT
* * *
12556586 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAAATCCTTTCG
648 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
12556651 AAATAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAATATAGAAAACGAGTC
713 AAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
12556716 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTAAGAATTTACAAGCCATAAAAA
778 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
12556781 TGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTA
843 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
12556834 TTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGATCGCTCGCCAGCCTGCCTGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGCCCGCCCGC
* * * * * *
12556899 TTGTTTCGTCGGTTGGCTTAGGCATATGTAGTTCATTCCTAGTCTAAGATCAGACCGAGTTGAGG
66 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGCTGAGG
* * * * **
12556964 GTTGCGACAGTAGGATCGGCAACACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCACATCTTG
131 GTTGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACCCAACCGATCCTCGGCTTGCACATCCCG
* * *
12557029 CCCCTCTGGCCGGTTGAGCGTCGGCACGCTCGTTTCATTGGTTGAC-T-----TA--G-G-----
196 CCCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* *
12557080 ---CA---T-A-CA-A---AGTTCATTCCCAGTCTAACATCGAACCAGACCGAGGGTTACGGCAG
260 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAG
* * * *
12557133 CACAAGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCACTGGGGCACCATC-G-T-CGG
325 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGGATCCGG
* * * * * *
12557195 AGAACCTTACCGGCGACATTGGGGTTCCGGCGATCG-GGGGGTCGGGGCAGTGTGCGCGCATGAT
390 AGAACCTTACTGGCGGCATTGGGGTTCCGACGATCGAAGGGGCCGGGGCAGTGTGCGCACATGAT
12557259 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
455 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
12557324 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGGCAGTAGCCATTAAAGTGTCTGA
520 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* ** *
12557389 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAACTTTT
585 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCCAAAATTTT
** * *
12557453 TTGTGCATGCCAAAAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAA
650 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
12557518 AAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCACGAAAAATAGATAACGAGTCGT
715 AAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12557583 CTTGCCATGAAACTT-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCAGAAAAATG
780 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
12557647 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
845 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
12557698 TCGATCCAGGGCTTGCGCATCCCGTCTCTTTGGCTGGCGTAGTGCCCACCCGTCCGCCCGCCCTC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG---A-CCGCCCGCCCGCCCGC
* * * * *
12557763 CCACTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTTATTCCCAGTATAAGAT
62 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
12557817 TGCACCAGAC
Statistics
Matches: 2486, Mismatches: 257, Indels: 115
0.87 0.09 0.04
Matches are distributed among these distances:
864 132 0.05
865 179 0.07
866 159 0.06
867 135 0.05
868 55 0.02
870 1 0.00
871 1 0.00
872 1 0.00
873 1 0.00
876 2 0.00
884 1 0.00
885 1 0.00
887 2 0.00
891 3 0.00
892 34 0.01
893 647 0.26
894 4 0.00
895 2 0.00
897 1 0.00
901 1 0.00
902 3 0.00
903 316 0.13
904 5 0.00
905 4 0.00
906 150 0.06
907 642 0.26
908 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGCCCGCCCGC
TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGCTGAGG
GTTGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACCCAACCGATCCTCGGCTTGCACATCCCG
CCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGGATCCGGA
GAACCTTACTGGCGGCATTGGGGTTCCGACGATCGAAGGGGCCGGGGCAGTGTGCGCACATGATG
TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCCAAAATTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
Found at i:12559669 original size:865 final size:865
Alignment explanation
Indices: 12557862--12562933 Score: 5923
Period size: 865 Copynumber: 5.7 Consensus size: 865
12557852 TTCTTCGTCA
** * * *
12557862 GAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGAGGGGGTCGGGGGGGTG
1 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* * * * *
12557927 TGTGCACAATGATTTGCGATAGATGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCA
66 TGCGCAC-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * * **
12557992 AACCTAGAGAACTCAAACCCCCTTAAAGATCATTTGAGATTTTACAAGTTTGTTGCCAGTAGTAA
130 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
12558057 TTAAAGTGTCTGAAATAGGGACACTTTTTTCCAATGGTCATAAAATCTTGTACACTTTGAGTTTT
195 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * **
12558122 TAG-TGATTTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGTTGCCAA
260 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
12558186 AATTCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCGTGAAAAATA
325 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* *
12558251 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGG-TTAAGGGACCATTATATGAATTTAC
390 GAAAACGAGTCATCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTAC
*** *
12558315 AAGATGTAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTA
454 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
** * *
12558380 TCGATCCACGGCTTGCATATCCCATCTCTCTGGCCAGCGTAGTGCCCG---CCTGCCCGCTCGTT
519 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCCCCGCCCGCTCGTT
* ** *
12558442 TCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGT
584 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-AAGGGTTGT
* * * * * * * * * * ***
12558507 GACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCG-ATCCCCG-GCTTGCGCATCCCGCCC
648 GGCAGCAGGATCGACAGCACGTAGAGGGGGACCAGACTGCTTCCCCGAG-ATGCAC-GCTCGTTT
* * ** * * * * * * *** *
12558570 CTTTGGCCGGCTAAGCGCCT--GCACGCTCTTTTCGTGGGTCGACTTAGGCATACGGAGTTCATT
711 CGTGGGTTGACTTAG-GCATACGGA-GTTC-ATTC-CCAGT---C-TAAGCATACGGAGTTCATT
* * * * * * *
12558633 GCCACTCTAAGAT-TGACCCAGACTGAGGGTTGCGGCAGCACATCCTGGGCTCGAGCATGCGCTG
768 CCCAATCTAAGATCAGA-CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTG
* * ** * **
12558697 GTACCGCATTTTTTTTCGTCGGGGAACCATCATCG
831 GTGCCGCATTTTTCTTCACCGGGGCACCATCGCCG
* * *
12558732 GAGCATCGCCGG-GAACCTGACCGGTGGCGTTGGGGTTCCGACGAT-TGGGGGGCC-GGGGGGTG
1 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* * * *
12558794 T-CACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCTCATCAA
66 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
12558858 ACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCAT
131 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
12558923 TAAAGTGTTTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
196 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
12558988 AGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAA
261 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * ** * *
12559053 ACTCCTTCCGAAATAATTTTAAAAAATCTAGAAGCGCAAAAAGTTTCAAAAATCGTGAAAAA-AA
326 ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
* * *
12559117 AAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAA
391 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
12559182 GCCATAAAAATGGCATTGCCATGCAGAAATATAAAGATGTGCCTAAACCTACCTGCCACCCTATC
456 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
12559247 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCACCCGCTCGTTT
521 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCC-CCCGCCCGCTCGTTT
* * **
12559312 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGACAAAGGGTTACG
585 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-AAGGGTTGTG
** * * *
12559377 ATAGCAGAATCGACAGCACGCAGAGGGTGACCAGACTG-TTCCCCGAGATGCACGCTCGTTTCGT
649 GCAGCAGGATCGACAGCACGTAGAGGGGGACCAGACTGCTTCCCCGAGATGCACGCTCGTTTCGT
* *
12559441 GGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAATCTAAG
714 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
** *
12559506 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCCAGGCTCTGGCATGTGCTGGTGCCTCATTTT
779 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTT
*
12559571 TCTTCATCGGGGCACCATCGCCG
843 TCTTCACCGGGGCACCATCGCCG
* * * * * * *
12559594 TAGCATCGTCGGAGAACCTGACTGCCGGTATTGGGGTTCCGACAATCGGGGGGGCC-AGGGGGTG
1 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* * ** *
12559658 TGCGTACATGATGTGCGATGGGTGCCGGTACTTGGCATTTATATTGGACCCCTATCCCTCATCAA
66 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
12559723 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
131 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
12559788 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTT
196 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * ***
12559853 AGCTGATTTTTTTTGTGCATGCCAACCAAAATACAAGGACCACGTCTACCAAGTTTGTTACCAAA
261 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
12559918 ACTCCATT-CAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
326 ACTCC-TTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
*
12559982 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACA
390 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
12560047 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTAT
455 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
12560112 CGATCCACGGCTTGCGCATCCCTTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGTCTGATCGTT
520 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCC-CCCGCCCGCTCGTT
* * * *
12560177 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTGGGTCGAGTGTTG
584 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GAC-CGGACAAGGGTTG
* * *
12560241 TGGCAGTAGGATCGACAGCACATAGAGGGGGCCCCGGTCGATCCCCAG-CTTACGCATCCCACCC
647 TGGCAGCAGGATCGACAGCACGTAGA---GG----GG--GA---CCAGAC-T--GC-T----TCC
* * * *
12560305 TATGGCCGGCTGAGGGCCGTACGCTCGTTTCATGGGTTGACTTAGGCTTACGGAGTTCATTCCCA
692 -----CC-G-AGA-TG-C--ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * ** * * * * *
12560370 GTCTAAGCATA-AGAGTTCTTTCCCAGTCTAAGATTGGACCAGACTGAGAGTTACAGCAGCACAT
746 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAT
* * * *
12560434 GCTGGGCTCAGACATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCG
811 GCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCG
* * **** * **
12560490 GAGCATCACCGAAGAACCTGACCGGTAAAATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTG
1 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
*
12560555 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
66 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
12560620 ACCTTGAGAACTCACA-CCCCTTAATGAGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
131 ACCTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
12560684 TT-AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACATTTCAAGTTTT
195 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
12560748 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGAGCCAA
260 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * ** *
12560813 AACCCCTTTCAAAAAAATTTT-AAAAATCCCGAACCTACAAAAAGTTTTGAAAATCATG-AAAAT
325 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC-GCAAAAAGTTTCAAAAATCGTGAAAAAT
*
12560876 AG-AAACGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
389 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
12560939 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACCACCCT
454 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCT
** *
12561004 ATCGATCCACGGCTTGCGCATCCCAG-CTCTCTGGCCAGCACAGTACCCG---CCCGCCCGCTCG
518 ATCGATCCACGGCTTGCGCATCCC-GTCTCTCTGGCCAGCGTAGTGCCCGCCCCCCGCCCGCTCG
* * * * *
12561065 TTTCATTGGTTGGCTTAGGCATACGAATTTCATACCCAGTCTAAGATCAGACCGGACTGAGGGTT
582 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-AAGGGTT
* * *
12561130 GTGGGAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCTGCTTGCGCATCCTGCCC
646 GTGGCAGCAGGATCGACAGCACGTAGAGGGGGA-CC-A--GA-------C-T--G----CT----
* * * *
12561195 CTCTGGCCGGCTGAGCGCTCGCACACTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTGATTCC
689 -TC---CC--C-GA--GAT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
12561260 CAGTC-AAGCATACGGAGTTCATTCCCAGTCCAAGATCGGACTGGACCGAGGGTTGCGGCAGCAC
744 CAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAC
* * *
12561324 ATTCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCTGGGCACCATCGCCG
809 ATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCG
* * *
12561382 GAGCATCGCCGAAGAACCTGACCGGCAGCATTGGGGTTCCCTG-TGATCGGGGGGGCCGGGGGGG
1 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT-CC-GACGATCGGGGGGGCCGGGGGGG
* ***
12561446 TGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGAATTTATATTGGCCCCCTATCCCTCATC
64 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
12561511 AAACCTCAAGAACTCACA-CCCCTTAAAGAGAATATGAGATTTTACAGGTTTGCTGCCAGTAGCC
129 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
12561575 ATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
194 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
12561640 TTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCA
259 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
12561705 AAAATCCTTCCAAAAAAATTTTAAAAATTCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAT
324 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
12561770 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
389 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
12561835 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCTACCACCTTA
454 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
12561900 TCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCCGCCCGC
519 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCG--C-CCC--CCGCCCGC
* ** * * *
12561965 TTGTTTTGTCGGTCGGCTTAGGCATACGGA-TATCATTCCCAGTCTAAGATCAAATCGGATCAAG
579 TCGTTTCATCGGTTGGCTTAGGCATACGGAGT-TCATTCCCAGTCTAAGATCAGACCGGA-CAAG
* * * * * *
12562029 GGTTGCGGCAGCAGGATCGATAGCACGCAGAGGAGGACTCGATCGATCCCCGGCTTGCACATCCC
642 GGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGAC-C-A--GA----CTGCTT-C-C--CCG
* *
12562094 ACCCCTCTGGCTGGCTGAGCCCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
695 A--------GAT-GC--A-----CG----CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
12562159 TTCCCAGTCTAAGCATACGGAGTTCATTCACAATCTAAGATCAGACCGGACCGAGGGTTGCGGCA
740 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCA
* * * * *
12562224 GCACATGCTGGGCTCGAGCATATGCTGGTGCGGCAATTTTCTTCACCGGCGCACCATCGCCA
805 GCACATGCTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCG
* * * *
12562286 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTCCCGACGATCGAGGGGCCCGGGGGAGGT
1 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGT
*
12562351 GTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
65 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
12562416 AACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA
130 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
12562481 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTT
195 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * **
12562546 TAGCTGAATTTTTTTGTTCATGCCAACAAATATAGAAGGATCACGTCTACCAACTTT-GGGCTGA
260 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
12562610 ATCTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTAAAAAATCGTGAAAAATA
325 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
12562675 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
390 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
12562740 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
455 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
12562805 CGATCCACGGCTTGCGCATCCTGTCTCTCTCGCCAGCGTAGTGCCCGCCCGCCTGCTCGCTCATT
520 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCC-CCCGCCCGCTCGTT
* * * *
12562870 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAAGGTTG
584 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAAGGGTTG
12562934 CGGTAGCACA
Statistics
Matches: 3623, Mismatches: 450, Indels: 228
0.84 0.10 0.05
Matches are distributed among these distances:
862 105 0.03
863 31 0.01
864 20 0.01
865 619 0.17
866 364 0.10
867 18 0.00
868 21 0.01
869 143 0.04
870 11 0.00
873 1 0.00
875 2 0.00
877 1 0.00
878 5 0.00
879 3 0.00
880 2 0.00
881 2 0.00
882 2 0.00
883 2 0.00
886 3 0.00
887 4 0.00
888 1 0.00
889 5 0.00
890 88 0.02
891 10 0.00
892 210 0.06
893 366 0.10
894 96 0.03
895 87 0.02
896 393 0.11
897 171 0.05
899 1 0.00
900 67 0.02
901 4 0.00
902 5 0.00
903 155 0.04
904 448 0.12
905 157 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (865 bp):
GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCCCCGCCCGCTCGTTTC
ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAAGGGTTGTGGC
AGCAGGATCGACAGCACGTAGAGGGGGACCAGACTGCTTCCCCGAGATGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
CAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCT
TCACCGGGGCACCATCGCCG
Found at i:12561270 original size:25 final size:25
Alignment explanation
Indices: 12561242--12561289 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
12561232 GTTGACTTAG
*
12561242 GCATACGGAGTTGATTCCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
12561267 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
12561290 CAAGATCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:12562181 original size:26 final size:26
Alignment explanation
Indices: 12562145--12562197 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12562135 GTTGGCTTAG
* *
12562145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAATCTAA
12562171 GCATACGGAGTTCATTCACAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
12562197 G
1 G
12562198 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:12562413 original size:904 final size:900
Alignment explanation
Indices: 12559431--12562941 Score: 4940
Period size: 904 Copynumber: 3.9 Consensus size: 900
12559421 GAGATGCACG
* *
12559431 CTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
*
12559496 CCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCCAGGCTCTG-GCATGTGCTGG
66 CCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTC-GAGCATGTGCTGG
* * * * * * * * *
12559560 TGCCTCATTTTTCTTCATCGGGGCACCATCGCCGTAGCATCGTCGGAGAACCTGACTGCCGGTAT
130 TGCCGCATTTTTCTTCA-CCGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGGCAGCAT
* * * * *
12559625 TGGGGTTCCGACAATCGGGGGGGCC-AGGGGGTGTGCGTACATGATGTGCGATGGGTGCCGGTAC
194 TGGGGTCCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
12559689 TTGGCATTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
259 TTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
*
12559754 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
12559819 AATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACCAAAA
389 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *** *
12559884 TACAAGGACCACGTCTACCAAGTTTGTTACCAAAACTCCATT-CAAAAAAATTTTAAAAAATCTC
454 TACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCC-TTCCAAAAAAATTTTAAAAAATCCC
*
12559948 GAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
518 GAACC-TCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* *
12560012 CGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
582 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
12560077 TATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCT-TCTCTC
647 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTGTCTCTC
* * * * * * *
12560141 TAGCCGGCGTAGTGCCCGCCCGCCCGTCTGATCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
712 TGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * *
12560206 ATTCCCAGTCTAAGAT-AGGACTGGGTCGAGTGTTGTGGCAGTAGGATCGACAGCACATAGAGGG
777 ATTCCCAGTCTAAGATCA-AACCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGG
* * * * * *
12560270 GGCCCCGGTCGATCCCCAGCTTACGCATCCCA-CCCTATGGCCGGCTGAG-GGCCGTACG
841 GGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACA
* * * *
12560328 CTCGTTTCATGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCTTTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* ** * * * * * *
12560392 CCAGTCTAAGATTGGACCAGACTGAGAGTTACAGCAGCACATGCTGGGCTC-AGACATGTGCTGG
66 CCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAG-CATGTGCTGG
* * * * **
12560456 TGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGTAAAAT
130 TGCCGCATTTTTCTTCACCG-GGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGGCAGCAT
* * ** *
12560521 TAGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
194 TGGGGTCCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* ** *
12560586 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAATGAGGC
259 TTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA-GC
12560650 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGAAATGGGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
12560714 AAATGGTCATAAAATCTTGTACATTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
388 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
12560779 ATACAAGGATCACGTCTACCAACTTTGGAGCCAAAACCCCTTTCAAAAAAATTTT-AAAAATCCC
453 ATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * *
12560843 GAACCTACAAAAAGTTTTGAAAATCATG-AAAATAG-AAACGAGTCGTCTTG-CATGAAACTTCA
518 GAACCT-CAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
*
12560905 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
582 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
12560970 TATGAAGATGTGCCTAAACCCACCTAACCACCCTATCGATCCACGGCTTGCGCATCCCAG-CTCT
647 TATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCCTGTCTCT
** * * * * *
12561034 CTGGCCAGCACAGTACCCG--C-CC-GCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGAATTT
711 CTGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
12561095 CATACCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGTGGGAGCAGGATTGGCAGCACGTAGAGG
776 CATTCCCAGTCTAAGATCAAACCGGATC-AAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGG
* * ** * *
12561159 GGGACCCGACCGATCCCCTGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGCACA
840 GGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACA
* *
12561220 CTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTGATTCCCAGTC-AAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * *
12561284 CCAGTCCAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATTCTAGGCTCGGGCATGTGCTGGT
66 CCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGT
12561349 GCCGCATTTTTCTTCACCTGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGGCAGCATT
131 GCCGCATTTTTCTTCACC-GGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGGCAGCATT
* *
12561414 GGGGTTCCCTG-TGATCGGGGGGGCCGGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTA
195 GGGG-TCCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
12561478 CTTGGAATTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGA
258 CTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* *
12561542 ATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
12561607 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAA
388 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
12561672 ATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAATTCCC
453 ATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
12561737 GAACCGT-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
518 GAACC-TCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
*
12561801 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
582 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
12561866 TATGAAGATGAGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCAT-CCTGTCTCTC
647 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTGTCTCTC
* * * * *
12561930 TGGCCGGTGTAGTGCCCGCCCGCCCGTCCGCCCGCTTGTTTTGTCGGTCGGCTTAGGCATACGGA
712 TGGCCAGCGTAGTGCCCGCCCG-CC-T--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
12561995 -TATCATTCCCAGTCTAAGATCAAATCGGATCAAGGGTTGCGGCAGCAGGATCGATAGCACGCAG
773 GT-TCATTCCCAGTCTAAGATCAAACCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
* * * * * *
12562059 AGGAGGACTCGATCGATCCCCGGCTTGCACATCCCACCCCTCTGGCTGGCTGAGCCCCCGTACA
837 AGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACA
*
12562123 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
12562188 ACAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATATGCTGGT
66 CCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGT
* * * * * *
12562253 GCGGCAATTTTCTTCACCGGCGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATT
131 GCCGCATTTTTCTTCACCGG-GCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGGCAGCATT
* * *
12562318 GGGGTCCCGACGATCGAGGGGCCCGGGGGAGGTGTACGCACATGATGTGCGATGGGTGCTGGTAC
195 GGGGTCCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
12562383 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCA
259 TTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
*
12562448 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
12562513 AATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTTCATGCCAACAAATA
389 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* ** * * *
12562578 TAGAAGGATCACGTCTACCAACTTT-GGGCTGAATCTCCTTCCGAAAAAATTTTAAAAAATCTCG
454 TACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
*
12562642 AACCTCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
519 AACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
*
12562707 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
*
12562772 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCTGTCTCTCTC
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTGTCTCTCTG
* * *
12562836 GCCAGCGTAGTGCCCGCCCGCCTGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
714 GCCAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
12562901 TCCCAGTCTAAGATCAAACCGGACCAAAGGTTGCGGTAGCA
779 TCCCAGTCTAAGATCAAACCGGATCAAGGGTTGCGGCAGCA
12562942 CATGTCGGGC
Statistics
Matches: 2322, Mismatches: 249, Indels: 83
0.87 0.09 0.03
Matches are distributed among these distances:
889 1 0.00
890 110 0.05
891 26 0.01
892 204 0.09
893 364 0.16
894 89 0.04
895 86 0.04
896 390 0.17
897 167 0.07
899 2 0.00
900 71 0.03
901 1 0.00
902 3 0.00
903 200 0.09
904 451 0.19
905 157 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGT
GCCGCATTTTTCTTCACCGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGGCAGCATTG
GGGTCCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
CCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTGTCTCTCTGGC
CAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAAACCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACC
CGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACA
Found at i:12563547 original size:714 final size:715
Alignment explanation
Indices: 12562171--12563630 Score: 2205
Period size: 714 Copynumber: 2.0 Consensus size: 715
12562161 CCCAGTCTAA
* * * * * *
12562171 GCATACGGAGTTCATTCACAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAAGGTTGCGGCAGCACATGCTGGG
* * *
12562236 CTCGAGCATATGCTGGTGCGGCAATTTTCTTCACCGGCGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGAGCATATGCTGGTGCCGCAATTTTCTTCACCGGCGCACCATCACCAGAGCATCACCGGAGA
* *
12562301 ACCTGACCGACGGCATTGGGGTCCCGACGATCGAGGGGCCCGGGGGAGGTGTACGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTCCCGACGATCCAGGGGCCCGGGGGAGGTGTACGCACATAATGT
12562366 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12562431 CACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
* *
12562496 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT
326 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTGAGCTGAATTTTTTT
* * * * ** *
12562561 GTTCATGCCAACAAATATAGAAGGATCACGTCTACCAACTTTGGGCTGAATCTCCTTCCGAAAAA
391 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGCCAAAACTCCTTCCGAAAAA
* *
12562626 ATTTTAAAAAATCTCGAACCTCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
456 ATTTTAAAAAATCTCGAACCTCAAAAAGTTTAAAAAATCGAGAAAAAGAGAAAACGAGTCATCTT
*
12562691 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12562756 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
12562821 CATCCTGTCTCTCTCGCCAGCGTAGTGCCCGCCCGCCTGCTCGCTCATTTCGTCGGTTGGCTTAG
651 CATCCGGTCTCTCTCGCCAGCGTAGTGCCCACCCGCCCGCCCGCTCATTTCATCAGTTGCCTTAG
*
12562886 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAAGGTTGCGGTAGCACATG-TCGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAAGGTTGCGGCAGCACATGCT-GG
* * * * * * **
12562950 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTT-AGTCGGGGCACCATCACTGGAGCATCACCGGA
65 GCTCGAGCATATGCTGGTGCCGCAATTTTCTTCA-CCGGCGCACCATCACCAGAGCATCACCGGA
* * * * * *
12563014 GAACCTGATCGGCGGCATTGGGGTTCCGACGA-CCATGGGGGCCGGGGG-GTTGTGCGCACATAA
129 GAACCTGACCGACGGCATTGGGGTCCCGACGATCCA-GGGGCCCGGGGGAGGTGTACGCACATAA
*
12563077 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
12563142 TCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
*
12563207 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTT
323 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTGAGCTGAATTTT
* * * *
12563272 TTTATGCATGCCAA-AAAAATACAATGATCACGTCTACTAAGTTTGGGACCAAAACTCCTTCTGA
388 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGG-CCAAAACTCCTTCCGA
* * *
12563336 AAAAATTTTGAAAAATCTCGAACCGT-TAAAAGTTTTAAAAATCGAGAAAAAGAGAAAACGAGTC
452 AAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTAAAAAATCGAGAAAAAGAGAAAACGAGTC
*
12563400 GTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATT-TATGAATTTACAAGCCATAAAAA
516 ATCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
12563464 TGGCATTGGTATGCAGAAAATCTGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCTACGG
581 TGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGG
* * *
12563529 CTTGCGCATCCGGTCTCTCTGGCCAGCGTGGTGCCCACCCGCCCGCCCGCTCGTTTCATCAGTTG
645 CTTGCGCATCCGGTCTCTCTCGCCAGCGTAGTGCCCACCCGCCCGCCCGCTCATTTCATCAGTTG
12563594 CCTTAG
710 CCTTAG
*
12563600 GCATACAGAGTTCATTCCCAGTTTAAGATCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCA
12563631 GACTAGACTG
Statistics
Matches: 671, Mismatches: 68, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
713 66 0.10
714 458 0.68
715 147 0.22
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (715 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAAGGTTGCGGCAGCACATGCTGGG
CTCGAGCATATGCTGGTGCCGCAATTTTCTTCACCGGCGCACCATCACCAGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTCCCGACGATCCAGGGGCCCGGGGGAGGTGTACGCACATAATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTGAGCTGAATTTTTTT
ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCTCGAACCTCAAAAAGTTTAAAAAATCGAGAAAAAGAGAAAACGAGTCATCTT
GACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCG
CATCCGGTCTCTCTCGCCAGCGTAGTGCCCACCCGCCCGCCCGCTCATTTCATCAGTTGCCTTAG
Found at i:12563788 original size:26 final size:26
Alignment explanation
Indices: 12563759--12563811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12563749 GTTGAGTTAG
12563759 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* * *
12563785 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12563811 G
1 G
12563812 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12564711 original size:26 final size:26
Alignment explanation
Indices: 12564662--12564713 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12564652 GTTGAGTTAG
* *
12564662 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12564688 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12564714 AATTGGATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12565324 original size:897 final size:890
Alignment explanation
Indices: 12562886--12565444 Score: 3489
Period size: 899 Copynumber: 2.8 Consensus size: 890
12562876 GTTGGCTTAG
* * * ** * * *
12562886 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAAGGTTGCGGTAGCACATG-TCG
1 GCATACGA-AGTTCATTCCTAGTCTAAAATCAGACTAGACCGAGGGTTGCGGCAGCACATGCT-G
* * *
12562949 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT-AGTCGGGGCACCATC-ACTGGAGCATCACCG
64 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA-CCGGGGCACCATCGTC-GGAGCATC-GCG
* * * *
12563012 GAGAACCTGATCGGCGGCATTGGGGTTCCGACGACCATGGGGGCCGGGGGGTTGTGCGCACATAA
126 GAGAACCTGA-CCGCGGCATTGGGGTTCC-A--ACGAT----G-CGGGGGGGTGTGCGCACATGA
*
12563077 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
182 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
12563142 TCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
247 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
12563207 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTT
312 AAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
* * * *
12563272 TTTATGCATGCCAAAAAAATACAATGATCACGTCTACTAAGTTTGGGACCAAAACTCCTTCTGAA
377 TTTGTGCATGCCAAAAAAATACAAAGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTC-GAA
* * * *
12563337 AAAATTTTGAAAAATCTCGAACCGTTAAAAGTTTTAAAAATCGA-GAAAAAGAGAAAACGAGTCG
441 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATC-ATGAAAAATAAAAAACGAGTCG
*
12563401 TCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATT-TATGAATTTACAAGCCATAAAAAT
505 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
12563465 GGCATTGGTATGCAGAAAATCTGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCTACGGC
570 GGCATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGC
* * * * * *
12563530 TTGCGCATCCGGTCTCTCTGGCCAGCGT-G-GTGCCCACCCGCCCGCCCGCTCGTTTCATCAGTT
635 TTGCGCATCCCGTCTCTCTGGCCAGAGTAGCCTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTT
* * * * **
12563593 GCCTTAGGCATACAGAGTTCATTCCCAGTTTAAGATCAGACTAGACTGAGGGTTGTGGCAGTAGG
699 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTAGG
* * ** *
12563658 ATTGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCAGC
764 ATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGAATCTCGCCCCTCTGGCCAGC
* * * *
12563723 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGAGTTAGGCATACGAAGTTCATTCCCAATCTAA
829 TGAGCACCCACACGCTCGTTTCATGGGTTGAGTTAGGCATACGAAGTTCATTCCCAATCTAA
* * * * * *
12563785 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGTTTTCAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCTAGTCTAAAATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12563850 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGAGCACCATCGTCGGAGCATCGTCGCAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-CGGAGA
*
12563915 ACCTGATCTGCGGCATTGGGGTTCCAACGATCGGGGGGGACGGGGGGGTGTGCGCACATGATGTG
130 ACCTGA-CCGCGGCATTGGGGTTCCAACGAT-------G-CGGGGGGGTGTGCGCACATGATGTG
* * *
12563980 CGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACATCGAGAACTCAC
186 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12564045 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAAT
251 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12564110 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTCTTTTG
316 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
* *
12564175 TGCATGCCAATAAAAATACAAAGATCACGTCTGCTAAGTTTGGGGCCAAAACA-CCTTTCAAAAA
381 TGCATGCCAA-AAAAATACAAAGATCACGTCTACTAAGTTTGGGGCCAAAA-ATCC-TTCGAAAA
* *
12564239 AATTTTAAAACATCTCGAACCGTAAAAAGTTTTAAAAAAT-GTGAAAAAT-AAAAACGAGTCGTC
443 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTT-AAAAATCATGAAAAATAAAAAACGAGTCGTC
* *
12564302 TTGCGATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12564367 CATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGACTT
572 CATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTT
* * *
12564432 GCGCATCCTGTCTCTCTGGCCAGAGTAACGCCCGCCCGCCCGCCCGCACGCTCGTGTCGTCGGTT
637 GCGCATCCCGTCTCTCTGGCCAGAGT-A-GCCTGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTT
12564497 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTAGG
699 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTAGG
* * * *
12564562 ATTGGCAGCACGTAGAGGGGGACTCG-CCGATCCCCGGCTTACGAATC-CTGCCCCTTTGGCCGG
764 ATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGAATCTC-GCCCCTCTGGCCAG
* * **
12564625 TTGAGCACCCACACGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCCCCGTCTAA
828 CTGAGCACCCACACGCTCGTTTCATGGGTTGAGTTAGGCATACGAAGTTCATTCCCAATCTAA
** *
12564688 GCATACGAAGTTCATTCCTAGTCTAAAATTGGA-TCAGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGAAGTTCATTCCTAGTCTAAAATCAGACT-AGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
12564752 GCTCAGGCATGTGCTGATGCTGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCAGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGC-GGAG
*
12564817 AACCTGACCGACGTCATTGGGGTTCCAACGAT-CGGGGGGGTGTGCGCACATGATGTGCGATGGG
129 AACCTGACCG-CGGCATTGGGGTTCCAACGATGCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12564881 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGGGAACTCACACCACCC
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCC
* * * *
12564946 TCAAAGAGCATTTGAGATTTTGCAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
12565011 ACTTTTTTCAATTGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTGTTTTTTGTGCA
322 ACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TT-TTTTTTGTGCA
* *
12565076 TGCCAACAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTCGAAAAAATTTT
385 TGCCAA-AAAAATACAAAGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTCGAAAAAATTTT
*
12565141 AAAAAATCTCGAATCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
449 AAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
*
12565206 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGC
514 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
12565271 ATGCAGAAAATTTGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGGTTACGCATC
579 ATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGCATC
* **
12565336 CCGTCTCTCTGGCCA-ACGTAG--TGCCTGCCCGTCTGGCCGCTCGTTTCGTCGGTTGGCTTAGG
644 CCGTCTCTCTGGCCAGA-GTAGCCTGCCCGCCCG-CCCGCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
12565398 CATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTG
707 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
12565445 TGGCAGCACA
Statistics
Matches: 1480, Mismatches: 149, Indels: 68
0.87 0.09 0.04
Matches are distributed among these distances:
893 75 0.05
894 91 0.06
895 116 0.08
896 55 0.04
897 215 0.15
898 1 0.00
899 393 0.27
900 191 0.13
901 9 0.01
902 5 0.00
903 221 0.15
904 108 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGAAGTTCATTCCTAGTCTAAAATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCGGAGAA
CCTGACCGCGGCATTGGGGTTCCAACGATGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAA
AAAAATACAAAGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTCGAAAAAATTTTAAAAAAT
CTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTC
TCTGGCCAGAGTAGCCTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTAGGATTGGCAGCACGCAGAG
GGGGACCCGACCGATCCCCGGCTTACGAATCTCGCCCCTCTGGCCAGCTGAGCACCCACACGCTC
GTTTCATGGGTTGAGTTAGGCATACGAAGTTCATTCCCAATCTAA
Found at i:12566059 original size:717 final size:711
Alignment explanation
Indices: 12564688--12566147 Score: 2144
Period size: 717 Copynumber: 2.0 Consensus size: 711
12564678 CCCCGTCTAA
* * * * *
12564688 GCATACGAAGTTCATTCCTAGTCTAAAATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTAGG
*** * * *
12564753 CTCAGGCATGTGCTGATGCTGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCAGGAGA
66 CTCAGGCATGTGCTGATGCCACATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCACAGGAGA
* * * *
12564818 ACCTGACCGACGTCATTGGGGTTCCAACGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 ACCTGACCGACGGCATTGGGGTTCCAACGACCGGGGGGGTGTGCGCACATGATGTACGATAGGTG
* * *
12564883 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGGGAACTCACACCACCCTC
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACCCAAACCACCCTC
* * * *
12564948 AAAGAGCATTTGAGATTTTGCAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCAATTAAACTGTCTGAAATGGGGACAC
* * *
12565013 TTTTTTCAATTGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTGTTTTTTGTGCATG
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATATGTTTTTTGTGCATG
* * * * *
12565078 CCAACAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTCGAAAAAATTTTAA
391 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTCCGAAAAAATTTTAA
*
12565143 AAAATCTCGAATCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
456 AAAATCCCGAATCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* *
12565208 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCAT
521 AACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
12565273 GCAGAAAATTTGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGGTTACGCATCCC
586 GCAAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTACGCATCCC
* * *
12565338 GTCTCTCTGGCCAACGTAGTGCCTGCCCGTCTG-GC-CGCTCGTTTCGTCGGTTGGCTTAG
651 GTCTCTCTGGCCAACGTAGTGCCCGCCCGCCAGCGCTCGCTCGTTTCGTCGGTTGGCTTAG
* * *
12565397 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTAGG
* * * *
12565462 CTC-GAGCATGTGCTGGTGCCACATTTTTCTTCGA-TGAGGCACCATTGCCGGAGCATCACCGGA
66 CTCAG-GCATGTGCTGATGCCACATTTTTCTTC-ACCGAGGCACCATCGCCGGAGCATCACAGGA
* *
12565525 GAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGCTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCC-A--A-C-----GACCGGGGGGG-TGTGCGCACATGAT
**
12565590 GTACGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACC
184 GTACGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACC
* * *
12565655 CAAACC-CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCAATTAAACTGTCTG
249 CAAACCACCCTCAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCAATTAAACTGTCTG
12565719 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATG-
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATATGT
*
12565782 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCCTCC
379 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAAT-CCTCC
* * * *
12565847 GAAAAAATTTTAAAAAAATCCCGAATCG-CAAAATTTTTAAAAATCGTGAAAAATAGAAAACGAG
443 GAAAAAATTTT-AAAAAATCCCGAATCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAG
*
12565911 TCGTCTTGCCATGAAACCTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
507 TCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
12565976 AATGGCATTGGCATGCAAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAC
572 AATGGCATTGGCATGCAAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAC
* * * *
12566041 GGCTTACGCATGCCGTCTCTTTGGCCAGCGTAGTGCCCGCTCGCCAGCCCGCTCGCTCGTTTCGT
637 GGCTTACGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCAG--CGCTCGCTCGTTTCGT
12566106 CGGTTGGCTTAG
700 CGGTTGGCTTAG
12566118 GCATACGGAGTTCATTCCTAGTCTAAGATC
1 GCATACGGAGTTCATTCCTAGTCTAAGATC
12566148 AGATTGGACC
Statistics
Matches: 667, Mismatches: 66, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
708 1 0.00
709 131 0.20
710 2 0.00
712 1 0.00
713 1 0.00
716 54 0.08
717 212 0.32
718 133 0.20
719 78 0.12
720 2 0.00
721 52 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTAGG
CTCAGGCATGTGCTGATGCCACATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCACAGGAGA
ACCTGACCGACGGCATTGGGGTTCCAACGACCGGGGGGGTGTGCGCACATGATGTACGATAGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACCCAAACCACCCTC
AAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCAATTAAACTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATATGTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTCCGAAAAAATTTTAA
AAAATCCCGAATCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
AACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTACGCATCCC
GTCTCTCTGGCCAACGTAGTGCCCGCCCGCCAGCGCTCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:12566312 original size:26 final size:26
Alignment explanation
Indices: 12566276--12566328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12566266 GTTGAGTTAG
*
12566276 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
*
12566302 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
12566328 G
1 G
12566329 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATTCCCAGTCTAA
Found at i:12567200 original size:26 final size:26
Alignment explanation
Indices: 12567164--12567215 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12567154 TTGACTTAGC
* *
12567164 CATACGGAGTTGATTGCCAGTCTAAG
1 CATACAGAGTTCATTGCCAGTCTAAG
*
12567190 CATACAGAGTTCATTGCTAGTCTAAG
1 CATACAGAGTTCATTGCCAGTCTAAG
12567216 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTGCCAGTCTAAG
Found at i:12568078 original size:26 final size:26
Alignment explanation
Indices: 12568041--12568093 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12568031 GTTGACTTAG
* *
12568041 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12568067 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12568093 G
1 G
12568094 ACCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12568589 original size:893 final size:894
Alignment explanation
Indices: 12567288--12575032 Score: 5845
Period size: 893 Copynumber: 8.7 Consensus size: 894
12567278 TTTTCTTCGT
* * * * *
12567288 CGGAGAACCTGACCGACGGCATTGGCGTTCTGACAATCGGGGGGGCCCGGGCGGTGTGCGCACAT
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACAT
12567353 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA---C-AG-
* * * * *
12567417 ACTCACACCCCCTTAAAGAGGATTTGAGAGTTTGCAGGTTTGCTGCTAGTAGCCATTCAAGTGTC
125 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
12567482 TAAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATT
190 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
* * **
12567547 ATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGTGAAAACTCCTTCC
255 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
12567612 GAAAGAATTTTAAAAAATCCCGAACCGCAAAACGTTTCGAAAATCATGAAAAATAGAAAACAAGT
320 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
12567677 TGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
385 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAA
*
12567742 AAT-GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
449 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
* * * * * *
12567806 GCTTGCGCATCCCGTCTCT-TAGGCTGACGTAATGCCCTTCTGCCTGCCCGTCCGTTCGTTTCGT
514 GCTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCC--C-GCCCGCCCGCCCGCTCGTTTCGT
* * * * * **
12567870 CAG-TTGGCTTAGGCATACGGAGTTCATTCCCAATCCAAGATCGAATCAG-TCTGAAGGTTAAGG
575 CGGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCTGAGGGTTGCGG
** * * * *
12567933 CAGCAGGACCGGTAGCACGTAGAGGGGGCCCCGGTCGATCCTCGGCTTGCGCATACCGCCCCTCT
640 CAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCAT-CCGCCCCTCT
* * *
12567998 AGCCGACTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
704 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
12568063 CTAAGCATACGAAGTTCATTCCCAATCTAAGACCAGACCGGACCGAGGATTGCAGCAGCACATAC
769 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGC
* *
12568128 TGGGCTCAGGCAGGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGC
833 TGGGCTC-GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCAC
** * * **
12568191 CAAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGCGGGGGCTGGGGGGTGTAAGCACATG
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
* * *
12568256 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATC-AA-AG-CTGA-
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACAGACTCAC
* *
12568317 A-GCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
131 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12568381 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTCTTTTG
196 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
12568446 TGCGTGCCAAAAAAAATACAGGGATCACGTCTACCATGTTTCGAGCCAAAACGCCTTCCGAAAAA
261 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * * *
12568511 ATTTTAAAAAATCTTGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
326 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12568576 GCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCAAAAAAATGACA
391 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12568641 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGTG
456 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * *
12568706 AATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGG-TTGG
521 CATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGATTGG
* * * * *
12568770 TTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGA-CCGAGGGTTGCGGTAGTAGGA
583 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCTGAGGGTTGCGGCAGCAGGA
* * ** ** * * **
12568834 TGGGCAGCACATAGAGGGGGACCCGACCGATCGTCGGCTTGCACATCCCGCCCCTCTGGCCGGTT
648 TTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCAT-CCGCCCCTCTGGCCGACT
* ** * * * **
12568899 GAGCACCCGTGCGCTTGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTGGGCCA
712 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-CA
* * *
12568964 -AC--A-CTCGTT-TC-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTT
776 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGC-T
* **
12569023 CGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATTGC
839 CGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCAC
* * * *
12569079 CGGAGAACCTGACCGGCAGCATTGGGGTTCTTG-CGATCGGGGGGGGCCAAGGGGGGTGTGCGCA
1 CGGAGAACCTGACCGACGGCATTGGGGTTC-CGACGATC-GGGGGGG-C-GGGGGGGTGTGCGCA
12569143 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTA
62 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-C---
* * *
12569208 AGAACTCACACCCCTTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT
123 AG-ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
12569273 GTCTGAAATAGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
187 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA
* * *
12569338 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCTGAAAACTCC
252 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCC
*
12569402 TTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
316 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
12569467 GAGTCGTCTTGCCATAAAACTTCACGTGAAGGGTTAAGGG-CCATTGTATGAATTTACAAGCCAT
381 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** *** * ** **
12569531 AAAAATGGCATTGGCACATAGAAAT-CCCAGCGTAGTGCCT-GTCCGC-CCGCCCACCCGCTTGT
446 AAAAATGGCATTGGCATGTAGAAATATGAAG-AT-GTGCCTAAACC-CACCTACCA-CC-C---T
* * ** * * * ** ** * ** * * *
12569593 TTTG-TCGGTTGTCTTAG-GCATACGGAGT-TCATTCCCAGTC-TAAGATAG--GAG-CGGACAG
503 ATCGATC-CATGGCTT-GCGCATCCCGTCTCTC-TGGCC-GGCGT-AG-T-GCCCCGCCCGCCCG
** * * * * * * * *** ** * ** *
12569651 -AGGGTTGTGATAG-CAGGATCGG--TA-GCACACAGAGGGGGACCCGACCAATCCCCAGCTTGC
561 CCCGCTCGT-TTCGTC-GGATTGGCTTAGGCATACGGA-GTTCATTC--CCAGT-CTAAG-AT-C
* * * * ** * * ** ** ***
12569711 GTATCCCGCCCCTCT-AGCCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTCG-AGTTAGGCATA
618 G-AACCAG---ATCTGAG--GG-T---TG-CGGCA-GCAGGATTGGCAGCACGTAG--AGGGGGA
* * ** * *** ** * *
12569774 -CGGAGTTC-ATTCCCAG-TCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATTG-GACCAG-A
669 CCCG-G-TCGATCCCCAGCT-TGCGCAT-CCGCCCCTC-TGGCC-GACT--GA--GCG-CCCGCA
*** * * * * * **
12569833 CCGAGGGTTAC---GGTAGCACATGCTGGGC-T-CGGGCATGTGC-TGGTGCCGCATTTTTCTTC
723 -CGCTCGTTTCGTGGGTTG-AC-T--TAGGCATAC-GG-A-GTTCAT--T-CC-CA---GTCTAA
* ** * * ** * * * *
12569892 GC---CGGGGCGGCA-TCGTCC-GACCACCACCGGAGAACCTGACCGGCGGGATTGGGGTTACGA
773 GCATACGGAG-TTCATTC--CCAGTCTAAGATC--AG-ACCAGACC-GAGGG-TT-GCG---C-A
** * * * * ***
12569952 TG-ATCGGGGGGGCCGGGGGGGCATGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTT-
825 -GCA-C----ATG-C---TGGGC-T-CG-GC---A--TGTGCT-GGTGCT-GCA-TT-TTTCTTC
* ** * * * * *
12570015 ATATTGGCCCCCTATCCCTC--ATCA-AAC
868 GT-CGGGGCACC-AT-CGTCGAAGCATCAC
* * ** *** * ** * * *** * *** *
12570042 CTTGAGAA-CTCACACCCCCTTAATGAGCATT-TGA-GATTTTACAGGTTTGC-TGCCAGT-AGC
1 C-GGAGAACCTGAC-CGACGGCATTG-GGGTTCCGACGA---T-CGGGGGGGCGGGGGGGTGTGC
* * * * ** ** *** * * ** *
12570102 -CA-TTAAAGTGTCTAAAATGGG-GACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGA
59 GCACATGATGTG-C---GATGGGTG---C--TGGT-ACTTGG-C-CCTTATATTG-GC-CCCCTA
** * * ****** ** ** ** * * *
12570164 GT-TTTTAGCTGAATTTTTTTTGTGCATGCCGACAAAAATA-CA--AGA-ATCATGTCTACCAAG
110 -TCCCTCA--TCAA---ACAGACT-CACACCCCCTTAAAGAGCATTTGAGAT--T-T-TA-CAGG
** * * * * * *** ** * ****
12570224 TTTGGGGCCA-AAACTCTTTATGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
163 TTTGCTGCCAGTAGC-C---AT--TAAAGTGT-CTGAAAT-GGGGA---C-ACTTTTTTC--AAA
* * * ** * * ** *
12570288 TCGTGA-AAAA--TAG-A-AAAT-GAGTTTTTAGCTGAA-TTTTTTATGCATGTGAAAAAAAATA
214 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * * *
12570346 CAGGGATCACATTTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTCAAAAATCTCGAA
279 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* *
12570411 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTG
344 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * **
12570476 AAGGCTTAAGAGACCATTTTATGAATTTACAAGCCATGAAAATGGCATTGGCACATAGAAATATG
409 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
*
12570541 AAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC
474 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
12570606 GGCGTAGT-----GCCCGCCCGTCCGTTCGTTTCATCGG-TTGGCTTAGGCATACGGAGTTCATT
539 GGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGATTGGCTTAGGCATACGGAGTTCATT
* * * *
12570665 CCCAGTCTAAGATC-AGACCAGA-CCGAGGGTTGCGGCAGCAGGATTGACAGCAAGCAGAGGGGG
604 CCCAGTCTAAGATCGA-ACCAGATCTGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGG
* * * *
12570728 ACCCGGTCGATCCCCAGCATGTGCATCCCGCCCCTCTGGCCGACTGAACGCCCGCACTCTCGTTT
668 ACCCGGTCGATCCCCAGCTTGCGCAT-CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
* * *
12570793 CATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTTT
732 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
12570858 AAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGATGGGCTCGAGCATGTGCTGGTGCTGTAT
797 AAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCTGCAT
** * *
12570923 TTTTCTTCGTCGTGGG-ACCATCACCGGAGCATCAT
860 TTTTCTTCGTCG-GGGCACCATCGTCGAAGCATCAC
* * *
12570958 CGGAGAACCTGACC-AGCGACATTGGGGTTCCGATGATCGGGGGGGAGGGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACAT
* *
12571022 GATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTGAGAA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-C--AG-A
* * * * *
12571087 CTCACACCCCCTTAAAGAGCATTTCAGAGTTTACAGGTTTGCTACCAGTAGTCGTTAAAGTGTCT
126 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
12571152 AAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCAAGTTTTTGGCTTAATTT
191 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
* * ** * * *
12571217 TTTTGTGCATGCCAACAAAAATACAAGGTTCATGTCTACCAAG-TTGGCACCAAAAGTCCTTTCA
256 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
12571281 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
321 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
12571346 ATCTTGCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTACGATTTTACAGGCCATAAAAA
386 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * ** *
12571410 TGGCATTGGCACGTACAAATATGAAGGTGCACCTAAACCCACCTACCACCCTATCGACCCATGGC
451 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
* * * * *
12571475 TTGCGCATCCCCTCTCTCTGGCTGGCGTAGTG-CCCGCCCGCTCGCCCACTCATTTCGTCGG-TT
516 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGATT
* * * *
12571538 GGCTTAGGCATAC-GAGTTCATTCACAGTCTAAGATCG-ACCAGATC-GAAGGTTGTGGTAGCAG
581 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCTGAGGGTTGCGGCAGCAG
* * ** *
12571600 GATTGGCAGCATGTAGAGGGGGACCCGTTCGATCCCCAGCTTGCAAATCTCGCCCCTCTGGCCGG
646 GATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATC-CGCCCCTCTGGCCGA
* * * * *
12571665 TTGATCGCCCGCACGCTTGTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
710 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** * *
12571730 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGTTGGGCT
775 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTGGGCT
* ** * *
12571795 CGGGCATATGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCAC
839 C-GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCAC
* *
12571852 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
* *
12571917 ATGTGCCATGGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
66 ATGTGCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-C---AG-
* * *
12571982 ACTCACA-CCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGTTACCAGTAGCCATTAAAGTGTC
125 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
12572046 TGAAATGGGGACACTTTTTTCAAATGGGT-ACAAAATCTTGTACACTTCGAGTTTTTAACTGAAT
190 TGAAATGGGGACACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
* * *
12572110 TTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTCCTTC
254 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** *
12572175 TGAAAGAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAG
319 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * *
12572240 TCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTATAAGCCATAAA
384 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
12572305 AATGGCATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
449 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
* * *
12572370 GCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCAGCCCGCTCGTTTCATC
514 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * * *
12572435 -GATTGGCTTAGGTATACGGAGTTCATTCCAAGTCTAAGCTAGGATC-GAACTGAGGGTTGCGGT
576 GGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCTGAGGGTTGCGGC
*
12572498 AGCAGGATTGGCAGCACGCAGAGGGGGA-CC---CG------A---T-CG-AT----CCC-C-GG
641 AGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCGCCCCTCTGG
* * *
12572542 --GA-T--------GCATGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCT
706 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
12572596 AAG-AT-C-G-G---------A--C------C-G---A-ACCGAGGGTTGCGACAGCACATGCTA
771 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTG
* * * * **
12572635 GGCTCAGGCATGTGCTGCTGCCGTATTTTTCTTCGTCGGGGCACCATCGACGAAGCATCGT
835 GGCTC-GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCAC
** * * * * * *
12572696 CGGAGAATTTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGGGTGTACGCACAT
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGGTGTGCGCACAT
*
12572761 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCATGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA---CA-G-
* * *
12572826 ACTCACACCCCCATAAAGAGGATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
125 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
12572891 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATT
190 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
* * *
12572956 TTTTTGTGCATGCCAA-AAAAATTACAAGGATCACATCTACCAAGTTTGGGACCAAAAATCCTTC
255 TTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
*
12573020 CGAAAAAA-TTT------T-----------AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
319 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * *
12573067 TCGTATTGCCATGAATCTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCACAAA
384 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
12573132 AATGGCATTGGCACT-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
449 AATGGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
* * *
12573196 GGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT-----GCCCGCCCGCCCTCTCGTTTCGTCTG
513 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
12573256 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGAT-AGATGGTTGTGGCA
578 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGATCTGAGGGTTGCGGCA
* * * * * * * * *
12573319 GCAAGTTTGACAGCACGCAGTGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGG
642 GCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCAT-CCGCCCCTCTGG
* * * *
12573384 CCGACTGAGCGCCCGCACGCTCGTTTTGTAGGTTGATTTAGGCATACGGAGTTCATTGCCAGTCT
706 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
12573449 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTACAACAGCACATGCTG
771 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTG
* * * ** *
12573514 GGCTCGACGTGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCAC
835 GGCTCGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCAC
* * **
12573574 CGGAGAACCTAACCGACGGCATTGGGGTTTCGACGATCGGTGGGACCGGGGGGGGTGTGCGCACA
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGGC-GGGGGGGTGTGCGCACA
* *
12573639 TGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCACAAG
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AA--AC-AG
*
12573704 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGT
125 -ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
12573769 CTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGGTTTTTAGCTGAA
189 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AAGTTTTTAGCTGAA
* *
12573834 TTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
253 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
12573899 CCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGA
318 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
12573964 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGGCCATTGTATGAATTTACAAGCCATAA
383 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* ** * *
12574029 AAATGGCATTGGGACATAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCAC
448 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
* * * * * * *
12574094 GGCTTACGCATCCCATTTCTCTAGCTGGCGTAGTG-CCCGCCCGCTCGTGTGCCCACTCGTTTCG
513 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGC-C---CGCCCGCTCGTTTCG
* * * * *
12574158 TC-GCTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-AGATCGGATC-GAGGGTTAC
574 TCGGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGATCTGAGGGTTGC
* * * * * *
12574220 GGTAGCAAGATTGACAGCACATAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGACCCT
638 GGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCC-GCCCCT
* *
12574285 CTGGTCGGA-TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
702 CTGG-CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
** *
12574349 AG--T---C-TA---AG---ATT----G-----GATC-G----GACATAGGGTTGCGACAGCAAA
766 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACA
* * * * * *
12574388 TGCTAGGCTCGGGCACGTGCTGGTGCCGTATTTTTC-T--T-----CACCAT-G--GCACCATCA
830 TGCTGGGCTC-GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCA
12574442 C
894 C
* * * * *** * * * *
12574443 CAGAGCATC-G-CCG--GG----GGGGTGTGCGCAC-AT-------TATGTGTGATGTGTG--C-
1 CGGAGAACCTGACCGACGGCATTGGGGT-TCCG-ACGATCGGGGGGGCGGGGGGGTGTGCGCACA
* * ** ** ** * *** * *
12574489 TG--GTAC--TTGGCCCTTATA-TTGGCCC-CCTA-T--CCCTC-ATCAAGCCTC-AAGA-ACTC
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACAGACTC
* * * *
12574542 ACACCCCCTTAAAGAGTATTTCAGATTTTACCGGTTTGCTGGCAGTA-CCATTAAAGTGTCT-AG
129 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-
* *
12574605 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
193 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
* **
12574670 TTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGATCC-AAACTCCTTCC-AA
258 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * *
12574733 GAAAATTTTAAAAAATCCCAAACCGTACAATGTTTAAAAAATCATGAAAAATAAAAAACGAGTCG
323 -AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
12574798 TCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
387 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* **
12574863 GGCATTGGCATGTAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATTGATCCACAGC
452 GGCATTGGCATGTAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCATGGC
* * * ** *
12574927 TTGCGCTTCCCGTCTCTTTGGTCGGCGTAGTG-CTTGCTCGCCCGCCCGCTCGTTTCGTC-GATT
516 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGATT
* * *
12574990 GGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATCGGACCA
581 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCA
12575033 AACCAAGGGT
Statistics
Matches: 5459, Mismatches: 998, Indels: 847
0.75 0.14 0.12
Matches are distributed among these distances:
819 21 0.00
820 72 0.01
821 4 0.00
824 2 0.00
826 54 0.01
827 181 0.03
828 1 0.00
829 5 0.00
830 213 0.04
831 64 0.01
832 58 0.01
833 47 0.01
834 1 0.00
835 3 0.00
836 1 0.00
838 2 0.00
840 9 0.00
841 5 0.00
842 2 0.00
843 2 0.00
844 183 0.03
845 202 0.04
846 8 0.00
848 4 0.00
849 1 0.00
850 2 0.00
851 1 0.00
853 57 0.01
854 2 0.00
855 2 0.00
856 1 0.00
857 2 0.00
861 5 0.00
862 5 0.00
863 2 0.00
865 2 0.00
866 2 0.00
867 4 0.00
868 2 0.00
869 16 0.00
870 48 0.01
871 1 0.00
872 6 0.00
874 1 0.00
875 1 0.00
878 79 0.01
879 236 0.04
880 101 0.02
881 9 0.00
882 2 0.00
883 4 0.00
884 4 0.00
887 8 0.00
888 129 0.02
889 17 0.00
890 8 0.00
891 69 0.01
892 128 0.02
893 673 0.12
894 343 0.06
895 226 0.04
896 152 0.03
897 122 0.02
898 181 0.03
899 9 0.00
900 74 0.01
901 327 0.06
902 99 0.02
903 108 0.02
904 11 0.00
905 183 0.03
906 26 0.00
907 9 0.00
908 3 0.00
910 3 0.00
911 1 0.00
912 11 0.00
913 8 0.00
914 7 0.00
915 23 0.00
916 20 0.00
917 8 0.00
918 17 0.00
919 22 0.00
920 3 0.00
921 5 0.00
922 4 0.00
923 1 0.00
924 16 0.00
925 7 0.00
926 7 0.00
927 1 0.00
928 2 0.00
929 3 0.00
930 1 0.00
931 1 0.00
932 5 0.00
933 1 0.00
934 2 0.00
935 8 0.00
936 1 0.00
937 2 0.00
938 8 0.00
939 7 0.00
940 7 0.00
941 7 0.00
942 6 0.00
943 3 0.00
944 8 0.00
945 9 0.00
946 2 0.00
947 1 0.00
948 3 0.00
949 7 0.00
950 12 0.00
951 4 0.00
952 4 0.00
953 9 0.00
954 7 0.00
955 23 0.00
956 11 0.00
957 6 0.00
958 3 0.00
960 10 0.00
961 10 0.00
962 6 0.00
963 18 0.00
964 28 0.01
965 6 0.00
966 9 0.00
967 4 0.00
968 3 0.00
969 5 0.00
970 6 0.00
971 16 0.00
972 9 0.00
973 19 0.00
974 21 0.00
975 16 0.00
976 5 0.00
977 19 0.00
978 6 0.00
980 6 0.00
981 155 0.03
982 75 0.01
983 4 0.00
984 1 0.00
985 3 0.00
986 4 0.00
987 4 0.00
988 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACAGACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGATTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCTGAGGGTTGCGGCAGCAGGATTG
GCAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCGCCCCTCTGGCCGACTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCACATGCTGGGCTCGGCATG
TGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCAC
Found at i:12569805 original size:26 final size:26
Alignment explanation
Indices: 12569769--12569821 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12569759 GTCGAGTTAG
*
12569769 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12569795 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12569821 G
1 G
12569822 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12570369 original size:142 final size:143
Alignment explanation
Indices: 12570162--12570443 Score: 388
Period size: 142 Copynumber: 2.0 Consensus size: 143
12570152 TGTACACTTC
* * **
12570162 GAGTTTTTAGCTGAATTTTTTTTGTGCATGCCGACAAAAATACAAGAATCATGTCTACCAAGTTT
1 GAGTTTTTAGCTGAA-TTTTTTTATGCATGCCGAAAAAAATACAAGAATCACATCTACCAAGTTT
* **
12570227 GGGGCCAAAACTCTTTATGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
65 GGGGCCAAAACTCCTTACAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
12570292 GAAAAATAGAAAAT
130 GAAAAATAGAAAAT
* * * * *
12570306 GAGTTTTTAGCTGAA-TTTTTTATGCATG-TGAAAAAAAATACAGGGATCACATTTACCAGGTTT
1 GAGTTTTTAGCTGAATTTTTTTATGCATGCCG-AAAAAAATACAAGAATCACATCTACCAAGTTT
* ** *
12570369 GGGGCCAAAACTCCTTCCAAAAAAATTTTCAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGT
65 GGGGCCAAAACTCCTTACAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
12570434 GAAAAATAGA
130 GAAAAATAGA
12570444 GAACGAGTCG
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
141 1 0.01
142 105 0.87
144 15 0.12
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (143 bp):
GAGTTTTTAGCTGAATTTTTTTATGCATGCCGAAAAAAATACAAGAATCACATCTACCAAGTTTG
GGGCCAAAACTCCTTACAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAAT
Found at i:12570838 original size:26 final size:26
Alignment explanation
Indices: 12570808--12570860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12570798 GTTGACTTAG
*
12570808 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12570834 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12570860 G
1 G
12570861 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12571731 original size:26 final size:26
Alignment explanation
Indices: 12571702--12571754 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12571692 GTTGACTTAG
12571702 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12571728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12571754 G
1 G
12571755 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12573461 original size:26 final size:26
Alignment explanation
Indices: 12573425--12573477 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12573415 GTTGATTTAG
*
12573425 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12573451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12573477 G
1 G
12573478 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12576189 original size:717 final size:700
Alignment explanation
Indices: 12574454--12576474 Score: 2801
Period size: 717 Copynumber: 2.9 Consensus size: 700
12574444 AGAGCATCGC
* * *
12574454 CGGGGGGGTGTGCGCACATTATGTGTGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
12574519 CCCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGTATTTCAGATTTTACCGGTTTGCTGG
66 CCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTA-CGGTTTGCTGG
12574584 CAGTACCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
130 CAGTACCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12574648 TCGAGTTTTTAGCTGATTTTTTTTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTT
194 TCGAGTTTTTACCTGA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
12574713 TGGATCC-AAACTCCTTCCAAGAAAATTTTAAAAAATCCCAAACCGTACAATGTTTAAAAAATCA
258 TGGATCCAAAACTCCTTCCAAGAAAATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCA
* *
12574777 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTAT
323 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
12574842 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCTGAAACCCACCTA
388 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCT-AAACCCACCTA
* * * * ** *
12574907 CCACCCTATTGATCCACAGCTTGCGCTTCCCGTCTCTTTGGTCGGCGTAGTGCTTGCTC-G-CCC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGGCCCC
* * * *
12574970 GCCCGCTCGTTTCGTCGATTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATCGGACCAAA
517 GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAGA
* * ** * *
12575035 CCAAGGGTTGCAACAGCACATCCTAGGCTCAAGCATGTGCTGGTGCCGTATTTTTCTTCACTGGG
581 CCGAGGGTTACGGCAGCACATCCTAGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
* **
12575100 GGACCATTGTCGGAGAACTTGACCGATGGCATTGGGATTCCGACGATCAGGGGGG
646 GGACCATTGTCGGAGAACTTGACCGACGGCATTGGGATTCCGAAAATCAGGGGGG
*
12575155 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** * * * * * *
12575220 CCCTGGTCAAACCTTGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
66 CCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTAC-GGTTTGCTGG
12575285 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
130 CAGTA-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12575350 TCGAGTTTTTACCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
194 TCGAGTTTTTACCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * *
12575415 GTG-GCTAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
259 G-GATCCAAAACTCCTTCCAAGAAAATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCA
* *
12575479 TGAAAAATAGAAAACGAGTCTTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
323 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* **
12575544 GAATTTACAAGACATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
388 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG-CTAAACCCACCTA
*
12575609 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCCCGCCCGGCCTC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGGCC-C
* * *
12575674 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGATCGG
516 -CGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGACCAG
* * * ** *
12575739 ATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGA
580 ACCGAGGGTTACGGCAGCACATCCTAGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCACCG-
* * * * *
12575804 AGCACCATCGCCTGAGCATTGTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGAAAATTGAGGG
644 -G-------G--GGACCATTGTCGGAGAACTTGACCGACGGCATTGGGATTCCGAAAA-TCAGGG
*
12575869 GGT
698 GGG
* * ** * *
12575872 CGGGGGGGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTTGCAATTATATTAGCCCCGTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
12575937 CCCTCATCAAGCCTCGAGAACTCAAACCCCCTTAAAGAGCATTTCAGATTTTATCGGTTTGCTGG
66 CCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTA-CGGTTTGCTGG
12576002 CAGTACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
130 CAGTACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
12576067 CGAGTTTTTATCTTATCTTTTTTGTGCGTGCCAATAAAAATACAAGGATCGCGTCTACCAAGTTT
195 CGAGTTTTTACCTGAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
12576132 GGATCCAAAACTCCTTCCGAGAGAATTTTAAAAAATCTCGAACCGTAAAATGTTTCAAAAATCAT
259 GGATCCAAAACTCCTTCCAAGAAAATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCAT
* * *
12576197 GAAAAACAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
12576262 AATTTGCAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGTCTAAACCCACCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG-CTAAACCCACCTAC
* ** * *
12576327 CATCCTATCGATCCACGGCTTGCGCATCATGTGTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCG---GCC
* * * * * *
12576392 CCACCCGCTCTTTTCGTCGATTGGCTTAGGCATATGGAGTTTATTCCCAATCTAATATTGGACCA
515 CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCA
12576457 GACCGAGGGTTACGGCAG
579 GACCGAGGGTTACGGCAG
12576475 TAGGATCGGC
Statistics
Matches: 1159, Mismatches: 132, Indels: 40
0.87 0.10 0.03
Matches are distributed among these distances:
700 1 0.00
701 167 0.14
702 293 0.25
703 4 0.00
704 1 0.00
705 56 0.05
706 54 0.05
707 1 0.00
714 1 0.00
716 114 0.10
717 391 0.34
718 52 0.04
719 21 0.02
720 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (700 bp):
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACGGTTTGCTGGC
AGTACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTACCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
ATCCAAAACTCCTTCCAAGAAAATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGGCCCCGCCC
GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGACCAGACCGAG
GGTTACGGCAGCACATCCTAGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGGACC
ATTGTCGGAGAACTTGACCGACGGCATTGGGATTCCGAAAATCAGGGGGG
Found at i:12576610 original size:26 final size:26
Alignment explanation
Indices: 12576581--12576633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12576571 GTTGACCTAG
*
12576581 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12576607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12576633 G
1 G
12576634 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12578282 original size:866 final size:862
Alignment explanation
Indices: 12575699--12581283 Score: 6062
Period size: 866 Copynumber: 6.3 Consensus size: 862
12575689 GTCGGTTGGC
* * * * *
12575699 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGATCGGATCGAGGGTTACGGCAGCACATGC
1 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* ** **
12575763 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGAAGCACCATCGCCTGAGCATTGTCG
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-----T---C---GTCG
* ** ** * * *
12575828 GAGAACTTGACCGGCGGCATTGGGGTTCCGAAAATTGAGGGGGTCGGGGGGGTGTGCGCACATGA
120 GAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * ** * * *
12575893 TGTGCGACGGGTGCTGGTACTTTGCAATTATATTAGCCCCGTATCCCTCATCAAGCCTCGAGAAC
185 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
12575958 TCAAACCCCCTTAAAGAGCATTTCAGATTTTATC-GGTTTGCTGGCAGTA-CCATTAAAGTGTCT
250 TCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * **
12576021 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTTATCTT
314 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
* * * ** *
12576086 TTTTGTGCGTGCCAATAAAAATACAAGGATCGCGTCTACCAAGTTTGGATCCAAAACTCCTTCCG
379 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * * * *
12576151 AGAGAATTTTAAAAAATCTCGAACCGTAAAATGTTTCAAAAATCATGAAAAACAGAAAACAAGTC
444 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
12576216 GTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTGCAAGCCATAAAAA
509 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
12576281 TGGCATTGGCATGCAAAAATATAAAGATGTGTCTAAACCCACCTACCATCCTATCGATCCACGGC
574 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * * * *
12576346 TTGCGCATCATGTGTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCACCCGCTCTTTTCGTCG
639 TTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCCCG-CCG-CCCGCTC-CT-GTTTCGTCG
* * * * * * * * *
12576411 ATTGGCTTAGGCATATGGAGTTTATTCCCAATCTAATATTGGACCAGACCGAGGGTTACGGCAGT
700 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGC
* ** * *
12576476 AGGATCGGCAACACACAGAGGGGCACCCGATCGATCCTCGGCTTGCGCATCCCACCCCCTCTGGC
765 AGGATCGGCAGCACGTAGAGGGG-A-CCGATCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGC
* *
12576541 CGACTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACCTAGGCATACGGAGTTGATTCCCAG
827 CGACTGAGCGCCCGCACGCTC-----AT---TT---C---G--T--GG-G-T--TT---AG
* * *
12576602 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGG-CCGAGGGTTGCGGCAGCACAT
1 T-TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC-CGGACCGAGGGTTGCGGCAGCACAT
* *** *
12576666 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTACCGGGGCACCATCGCCGGAGAACCTG
64 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTG
* * * *
12576731 ACCGGTAGCATTGGGGTTCCGACGATCAGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGATG
129 ACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
12576795 GGTGCTGGTACTTGGCCAC-TATATT-GCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCC
194 GGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
12576858 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
12576923 ACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTATCT-AAATTTTTTTGTGC
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAA-TTTTTTGTGC
** * *
12576987 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGGGTGGGGCCAAAACT-CTTTCAAAAAAAGT
387 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* * * *
12577051 TTAAAAAATCCCGAACCGTAAAAAGTTTCCAAATTCGTGAAATATAGAAAACGAGTCGTCTCGCC
452 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
12577116 ATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
12577181 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATACACGGCTTGCGCAT
582 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
12577246 CCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCAACCCACCTACTCGTTTCGTCGGTTGGCTTA
647 CCCGTCTCTCTGGCTGGTGTAGTGCCCGCCCGCC-GCCC-GCTCCT-GTTTCGTCGGTTGGCTTA
* * * ** * *
12577311 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGCTTGCGGCAATAGGATCCGT
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGC
** * * * ** * **
12577376 AGCACACAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCACTACTTTGGCCGGTTGAGCG
774 AGCACGTAGA-GGGGA-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
*
12577441 CCTGCACGCTCATTTCGTGGGTTTAG
837 CCCGCACGCTCATTTCGTGGGTTTAG
* * **
12577467 TTAGGTATATGGAGTTCATTCCCAGTTTAAGATC-GAACCGGACCGAGGGTTATGGCAGCACATG
1 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATG
* ** *
12577531 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCAGCGTCGGGGCACCATCGTCGGAGACCCTGA
65 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGA
* * *
12577596 CCGATGGCATTGGGGTTCTGGCGGTCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
130 CCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
12577661 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
** *
12577726 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCCATT-AAGTGTCCGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12577790 ACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGACTTTTTAGCTGAAATTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATG
* * * * *
12577855 CCAAAAAAAATACAAGGATCACGTATACCAAGTTTAGGGCCAAAACGCTTTTCGAAAAAATTTTA
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * * * * *
12577920 AAAAATCCCGAACGGCAAAAAGTTTCAAAAACCATGAAAAATAAAAAACGACTCGTCTTGCCATG
455 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
12577985 AAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
12578050 CGCAGAAATGTGAAGATATGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
585 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** *
12578115 GTCTCTCTGGCTGACGTAGTGCCCGCCCGCCTGCCCGCTCGCTTGTTTCATCGGTTGGCTTAGGC
650 GTCTCTCTGGCTGGTGTAGTGCCCGCCCGCC-GCCCGCTC-C-TGTTTCGTCGGTTGGCTTAGGC
* * * ** * * *
12578180 ATATGGAGTTCATTCCCAATCTAAGGTTAGACTGGACCGAGGGTTGCGGCAGCAGGATTGGTAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * *
12578245 ACGTAGAGGGGCACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAACGCTC
777 ACGTAGAGGGG-ACC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
*
12578310 ACACGCTCATTTCGTGGGTTGACTTAGG
840 GCACGCTCATTTCGTGGG-T---TTA-G
* * ***
12578338 CATATAGAGTTAATTCTCAGTTTAAGCATACGGGGTTCATTCCCAGTCTAAGATCGGATTAGACC
1 --T-TAG-G--------CA---T----AT--GGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * *
12578403 AAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGC
45 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* *
12578468 ACCATTGCCGGAGCATTGCGGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGG-
110 ACCA-T--C---G---T-C-GGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
12578532 CTGGGGGGTGTGCGCACATGATGTGCGAT-TGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
164 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
12578596 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGC
229 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
12578661 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
294 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12578726 TCGGGTTTTTAGCTG-AATTCTTTTGTGCATGCCAACAAAAATACAAGGATC-CTGTCCACCAAG
359 TCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAG
* * *
12578789 TTTGGGGCCCAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT
422 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
12578854 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGT
487 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
12578919 ATGAGTTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
552 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
*
12578984 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-TCGGTGTAGTGCCCGCCCACC
617 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGTGTAGTGCCCGCCC-GC
* *
12579048 CGCCCGCT-C-GTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC
680 CGCCCGCTCCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* * * * * * *
12579111 T-GACCGAGGTTTGTGGTAGTAGGATCGGCAGCACGTAGAAGGGGACCAACCGATCCCCGACTTG
744 TAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG-AGGGGACCGATCGATCCCCGGCTTG
* ** * * * * * *
12579175 CGCATCCCGCCCCTTTGGTTGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGAC
808 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTTAG
* * * **
12579230 TTTGGCATACGGAGTTCATTCCCAGTCTCAA-ATCAGATCGGACCGAGGGTTGCAACAGCACATG
1 TTAGGCATATGGAGTTCATTCCCAGTCT-AAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
* * * * *
12579294 CTAGGCTCGGGCATATGCGGGTGCCGTATTTTTCTCCGTCGGGGCACCATTGCCGGAGCATCGCT
65 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-T--C---G--T--C-
* *
12579359 GGAGAACCTGACCGAAGGCATTGGGGTTCCGACGATCGGGGGGGCTGAGGGGGGGTGTGCGCACA
119 GGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGC--CGGGGGGGTGTGCGCACA
* * * **
12579424 TGATGTGCGGTGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCTATCCATCATCAAACCTTAAG
182 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
12579489 AACTCACACCCCCTTAAAGGGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
247 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
12579554 CTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
312 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAA
* * * *
12579619 TTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCTAAAACTCCTTC
377 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * * * *
12579683 CAAAAAAATTTTAAAAAATCCCGAACTGTAAAAACTTTCGAAAATCGTAAAAAATAGAAAACGAG
442 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
12579748 TCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
507 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
12579813 AATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
572 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
12579878 GCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCCTGTCCGCCCGCTCGCTCGTTTCGTC
637 GCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCCCG-CCGCCCGCTC-CT-GTTTCGTC
** * * * * *
12579943 GGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACGACAG
699 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAG
* * * * * *
12580008 CAGGATTGGCAGCACGCAAAGGGGGACCCAGTCGATCCCTGGCTTGAGCATCCCGCCCCTCTGGC
764 CAGGATCGGCAGCACGTAGA-GGGGACCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
12580073 CAACTGAGTGCCCGCACGCTCATTGCACGGGTTGACTTAGGCATACGAAGTTCATTCCTAG
827 CGACTGAGCGCCCGCACGCTCA-T-------TT--C----G--T--G--G---GTT--TAG
* * * * *
12580134 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCACATG
1 T-TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
* * * * * * *
12580199 CTAGGCTCAGGCATGTGCTAGTGCCGCATTTCTCTTTGTCGAGGCACCATCGTCGGAGCATCGCT
65 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-AAC-CT
* *
12580264 GGAGAACCTCACCTGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGAGGGGGGTGTGCGCACA
128 ---G-ACC-GA--T--GGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGGTGTGCGCACA
*
12580328 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
182 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
12580393 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
247 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
12580458 CTGAAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTCTACACTTCGAGTTTTTACCT-AAT
312 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAA
* * * *
12580522 TTTTTTGTGCGTGCCAACAAAATTACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT
377 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * *
12580587 CGAAAAAATTTTAAACAATCTCGAACTGTAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
442 CGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
12580652 GTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCACAA
506 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * * *
12580717 ATTTGGCATTGGCACGTAGAAATATGAAGATGTACCAAAACCCACCTACCAACCTATCGATCCAC
571 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
12580782 GGCATGCACATCCTGTCTCTCTAG-TCGGTGTAGTGCCCG--C-CCGCCCGCT-C-GTTTCGTCG
636 GGCTTGCGCATCCCGTCTCTCTGGCT-GGTGTAGTGCCCGCCCGCCGCCCGCTCCTGTTTCGTCG
* * * * * * **
12580841 GTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGTCTGGGCCAAGGGTTATGGCAGC
700 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGC
* * * * *
12580906 AGGATCGGCAGCACGTAGAGAGGGACCTAGTCAATCCCCGGCTTACGCATCTCACCCCTCTGGCC
765 AGGATCGGCAGCACGTAGAG-GGGACCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
12580971 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
828 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTTAG
*
12581006 TTAGGCATATGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGATC
1 TTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-------G----GA-C
* ** * * **
12581071 AGACTGAGGGTTACGATAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC
44 ---C-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * *
12581136 GGGGTACCATCGTCGAAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCTGGCGATCGTG
105 GGGG---CA----C----CATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGG
* * * *
12581201 GGGGCCGGGGGGGTGTGCGCACATTATGTGTGATGGGTGCAGGTAGTTGGCCCTTATATTGGCCC
159 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
12581266 CCTATCCTTCATCAAACC
224 CCTATCCCTCATCAAACC
12581284 CCTTATATTG
Statistics
Matches: 4033, Mismatches: 484, Indels: 337
0.83 0.10 0.07
Matches are distributed among these distances:
863 3 0.00
864 137 0.03
865 176 0.04
866 437 0.11
867 2 0.00
868 2 0.00
870 5 0.00
871 167 0.04
872 8 0.00
873 3 0.00
874 275 0.07
875 215 0.05
876 6 0.00
877 4 0.00
878 83 0.02
879 47 0.01
880 3 0.00
881 3 0.00
882 2 0.00
883 1 0.00
885 1 0.00
886 1 0.00
887 3 0.00
888 1 0.00
889 5 0.00
890 27 0.01
891 117 0.03
892 384 0.10
893 177 0.04
894 43 0.01
895 5 0.00
896 76 0.02
897 259 0.06
898 88 0.02
899 12 0.00
900 7 0.00
901 123 0.03
902 376 0.09
903 88 0.02
904 282 0.07
905 362 0.09
906 4 0.00
907 2 0.00
908 11 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (862 bp):
TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGAC
CGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCTGGTGTAGTGCCCGCCCGCCGCCCGCTCCTGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGT
AGAGGGGACCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC
TCATTTCGTGGGTTTAG
Found at i:12578789 original size:902 final size:893
Alignment explanation
Indices: 12577477--12581283 Score: 4958
Period size: 902 Copynumber: 4.3 Consensus size: 893
12577467 TTAGGTATAT
* * * *
12577477 GGAGTTCATTCCCAGTTTAAGATC-GAACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCAG-ATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* ** *
12577541 GCATGTGCTGGTGCCGTATTTTTCAGCGTCGGGGCACCA-T--C---G--T--CGGAGACCCTGA
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCGGAGAACCTGA
* * * *
12577596 CCGATGGCATTGGGGTTCTGGCGGTCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
130 CCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
12577661 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
** *
12577726 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCCATT-AAGTGTCCGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
12577790 ACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGACTTTTTAGCTGAAATTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
12577855 CCAAAAAAAATACAAGGATCACGTATACCAAGTTTAGGGCCAAAACGCTTTTCGAAAAAATTTTA
389 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * * *
12577920 AAAAATCCCGAACGGCAAAAAGTTTCAAAAACCATGAAAAATAAAAAACGACTCGTCTTGCCATG
454 AAAAATCCCGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
12577985 AAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * *
12578050 CGCAGAAATGTGAAGATATGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
584 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
**
12578115 GTCTCTCTGG-CTGACGTAGTGCCCGCCCGCCTGCCCGCTCGCTTGTTTCATCGGTTGGCTTAGG
649 GTCTCTCTGGTC-GGTGTAGTGCCCGCCCGCC-GCCCGCT--C--GTTTCATCGGTTGGCTTAGG
* * * * * *
12578179 CATATGGAGTTCATTCCCAATCTAAGGTTAGACTGGACCGAGGGTTGCGGCAGCAGGATTGGTAG
708 CATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAG
* * *
12578244 CACGTAGAGGGGCACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAACGCT
773 CACGTAGAGGGG-ACCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * *
12578309 CACACGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTAATTCTCAGTTTAAGCATAC
836 CGCACGCTCATTTCATGGGTTGACTTAGGC--ATAGAGTTCATTCTCAGTCTAAGCATAC
* * * *
12578369 GGGGTTCATTCCCAGTCTAAGATCGGATTAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* * *
12578434 CATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATTGCCGGAGCATTGCGGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGC-GGAGAACCTGA
* * *
12578499 CCGACGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGAT-TG
130 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
12578563 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
12578628 TAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
12578693 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTCTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
12578758 CAACAAAAATACAAGGATC-CTGTCCACCAAGTTTGGGGCCCAAACTCCTTTCGAAAAAATTTTA
390 CAAAAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * *
12578822 AAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
454 AAAAATCCCGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
12578887 AAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
12578952 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
584 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
*
12579017 GTCTCTCTGGTCGGTGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
649 GTCTCTCTGGTCGGTGTAGTGCCCGCCC-GCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * ** * *
12579082 AGAGTTCATTCCCAGTCTAAGATCGGATCT-GACCGAGGTTTGTGGTAGTAGGATCGGCAGCACG
713 GGAGTTCATTCCCAATCTAAGATCAGA-CTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACG
* * * ** * *
12579146 TAGAAGGGGACCAACCGATCCCCGACTTGCGCATCCCGCCCCTTTGGTTGGCTGAGTGCCCGCAC
777 TAG-AGGGGACCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
* * *
12579211 ACTCGTTTC----G-TG-----GG--TTGA---C-TT-T--G-----GCATAC
841 GCTCATTTCATGGGTTGACTTAGGCATAGAGTTCATTCTCAGTCTAAGCATAC
* * ** *
12579240 GGAGTTCATTCCCAGTCTCAA-ATCAGATCGGACCGAGGGTTGCAACAGCACATGCTAGGCTCGG
1 GGAGTTCATTCCCAGTCT-AAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * * *
12579304 GCATATGCGGGTGCCGTATTTTTCTCCGTCGGGGCACCATTGCCGGAGCATCGCTGGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGC-GGAGAACCTG
* *
12579369 ACCGAAGGCATTGGGGTTCCGACGATCGGGGGGGCTGAGGGGGGGTGTGCGCACATGATGTGCGG
129 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC---GGGGGGGTGTGCGCACATGATGTGCGA
* * *
12579434 TGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCTATCCATCATCAAACCTTAAGAACTCACACC
191 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
12579499 CCCTTAAAGGGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
256 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
12579564 CACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
321 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
12579629 ATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCTAAAACTCCTTCCAAAAAAATT
386 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* * * * * *
12579693 TTAAAAAATCCCGAACTGTAAAAACTTTCGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTACC
451 TTAAAAAATCCCGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
12579758 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
12579823 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
581 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
* * **
12579888 CCCGTCTCTCTGG-CTGGTGTAGTGCCCGCCTGTCCGCCCGCTCGCTCGTTTCGTCGGTTCACTT
646 CCCGTCTCTCTGGTC-GGTGTAGTGCCCG-C---CCG-CCGCCCGCTCGTTTCATCGGTTGGCTT
* ** * * *
12579952 AGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGATTGG
705 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGG
* * * * * * *
12580017 CAGCACGCAAAGGGGGACCCAGTCGATCCCTGGCTTGAGCATCCCGCCCCTCTGGCCAACTGAGT
770 CAGCACGTAGA-GGGGA-CCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
12580082 GCCCGCACGCTCATTGCACGGGTTGACTTAGGCATACGAAGTTCATTC-CTAGTCTAAGCATAC
833 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA-G-AGTTCATTCTC-AGTCTAAGCATAC
* * ** * *
12580145 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCACATGCTAGGCTCAGG
1 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* * * * * * *
12580210 CATGTGCTAGTGCCGCATTTCTCTTTGTCGAGGCACCATCGTCGGAGCATCGCTGGAGAACCTCA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGC-GGAGAACCTGA
* *
12580275 CCTG-CGGCATTAGGGTTCCGACGATCGGGGGGCCGGAGGGGGGTGTGCGCACATGATGTGCGAT
130 CC-GACGGCATTGGGGTTCCGACGATCGGGGGGGC-G-GGGGGGTGTGCGCACATGATGTGCGAT
12580339 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
12580404 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
12580469 ACACTTTTTTCAAATGTTCACAAAATCTTCTACACTTCGAGTTTTTACCT-AATTTTTTTGTGCG
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
12580533 TGCCAACAAAATTACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
387 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* * * *
12580598 TAAACAATCTCGAACTGTAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
452 TAAAAAATCCCGAACGGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * **
12580663 ATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCACAAATTTGGCATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
12580728 GCACGTAGAAATATGAAGATGTACCAAAACCCACCTACCAACCTATCGATCCACGGCATGCACAT
581 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
* * *
12580793 CCTGTCTCTCTAGTCGGTGTAGTGCCCG--C-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
646 CCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * * *
12580855 ACGGTGTTCATTCCCAGTCTAAGATCAGTCTGGGCCAAGGGTTATGGCAGCAGGATCGGCAGCAC
711 ACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCAC
* * * * *
12580920 GTAGAGAGGGACCTAGTCAATCCCCGGCTTACGCATCTCACCCCTCTGGCCGACTGAGCGCCCGC
776 GTAGAG-GGGACC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
*
12580985 ACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTAAGCATAC
839 ACGCTCATTTCATGGGTTGACTTAGGCATA--GAGTTCATTCTCAGTCTAAGCATAC
* * ** *
12581042 GGAGTTCATTCCCAGTATAAGATCAGATCAGACTGAGGGTTACGATAGCACATGTTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* ** * * * *
12581107 CATGTGCTGGTGCCACATTTTTCTTCACCGGGGTACCATCGTCGAAGCATCGTCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCG-CGGAGAACCTGA
** * * * * *
12581172 CCGGTGGCATTGGGGTTCTGGCGATCGTGGGGGCCGGGGGGGTGTGCGCACATTATGTGTGATGG
130 CCGACGGCATTGGGGTTCCGACGATCG-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
12581237 GTGCAGGTAGTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
12581284 CCTTATATTG
Statistics
Matches: 2559, Mismatches: 283, Indels: 142
0.86 0.09 0.05
Matches are distributed among these distances:
871 148 0.06
872 2 0.00
873 1 0.00
874 258 0.10
875 216 0.08
876 2 0.00
877 2 0.00
878 91 0.04
879 53 0.02
883 4 0.00
884 2 0.00
887 2 0.00
889 2 0.00
891 1 0.00
892 92 0.04
893 4 0.00
895 1 0.00
896 76 0.03
897 364 0.14
898 91 0.04
899 8 0.00
900 3 0.00
901 107 0.04
902 373 0.15
903 87 0.03
904 239 0.09
905 328 0.13
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (893 bp):
GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
AAATCCCGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
CTCTCTGGTCGGTGTAGTGCCCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGA
GGGGACCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCA
TTTCATGGGTTGACTTAGGCATAGAGTTCATTCTCAGTCTAAGCATAC
Found at i:12580150 original size:26 final size:26
Alignment explanation
Indices: 12580113--12580165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12580103 GTTGACTTAG
*
12580113 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12580139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12580165 G
1 G
12580166 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12581040 original size:26 final size:26
Alignment explanation
Indices: 12581010--12581062 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12581000 GTTGACTTAG
* * *
12581010 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
12581036 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
12581062 G
1 G
12581063 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:12581314 original size:14 final size:13
Alignment explanation
Indices: 12581282--12581317 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
12581272 CTTCATCAAA
12581282 CCCCTTATATTGG
1 CCCCTTATATTGG
12581295 -CCCTTATATTGG
1 CCCCTTATATTGG
12581307 CCCCCTTATAT
1 -CCCCTTATAT
12581318 CTACCAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.57
14 9 0.43
ACGTcount: A:0.17, C:0.33, G:0.11, T:0.39
Consensus pattern (13 bp):
CCCCTTATATTGG
Found at i:12584316 original size:718 final size:716
Alignment explanation
Indices: 12581891--12584473 Score: 3657
Period size: 718 Copynumber: 3.6 Consensus size: 716
12581881 CCATCGCCGG
* *
12581891 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGATTTTTT
1 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTT
* * * *
12581956 TTTGTGCATGCCAAAAAAAATACAGGGATCACGTCTTCCAAGTTTGGGGCCAAAACACCTTCCGA
65 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGA
* * ** * *
12582021 AAAAATTTTAAAAAATC-CTGAACCGAAAAAATTTTTGAAAATCGTGAAAAATAAAAAACGAGTC
130 AAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* ** * * *
12582085 GTCTTGCCATGAAACTTCTGGTGAAGGCTTAAGGGAACTTTGTATTAATTTACAAGCCATAAAAA
194 GTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
12582150 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGTC
259 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
12582215 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCACGCTCGCCCGCCCACTCGTTTC-GTTG
324 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCC-GC-CGCCCGCCCGCCCGCTCGTTTCTGTCG
* * * *
12582279 GTTGGCTTACGTATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACGGAGGGTTGGGGCAGC
387 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGC
* * * * ** *
12582344 ACATGCCGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTCCGTCGGGGCATGATCGTCGGAGAA
452 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * *
12582409 TCATCGGAGAACCTGATCGACGACATTGGGGTTCCGATGATCGGGGGGGCC-AGGGGGTGTGCGC
517 TCA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGC
* * *
12582473 ACATGATGTGTGATGGGTGCTAGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTC
580 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
12582538 GAGAACTCACACTCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAG
645 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
12582603 TGTCTGA
710 TGTCTGA
* * * *
12582610 AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTATACACTTCGACTTTTTTGCTGAATTTTT
1 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
12582675 TTATCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAA
66 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAA
* * * *
12582740 AAAATTTCAAAAAATCTCGAACTGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCTT
131 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
12582805 CTTGCCATAAAACATCACGTG-AGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
196 CTTGCCATGAAACATCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12582869 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
260 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
12582934 TGCGCATCCCGTCTCTCTGGTCGACGTAATGCCCGCCCGCCCACCCGCCCGTTCATTT-TGTCGG
325 TGCGCATCCCGCCTCTCTGGCCGACGTAGTG-CCG-CCGCCCGCCCGCCCGCTCGTTTCTGTCGG
* * **
12582998 TTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGCA
388 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCA
* * *
12583063 CATGCTGGGCTCGGGCATGAGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATC-ACTGGAGCA
453 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCA
* *
12583127 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGAGGGCCGGGGGGGTGTGCGC
517 TC-ACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGC
* * *
12583192 ACATGATGTACGAAGGGTGCTGTTACTTGGCCCTTATATTTGG-CCCCTATCCCTCATCAAACCT
580 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCTCATCAAACCT
* *
12583256 CGAGAA-TGCACACCCCTTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAA
644 CGAGAACT-CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
12583320 AGTGTCTGA
708 AGTGTCTGA
12583329 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTCTT
1 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TT
* * *
12583393 TTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
65 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGA
* * * * * * * * * *
12583458 AAAAATTTTAAGAAATCCCGAACGGCAGAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGACT
130 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
12583523 TCTTGCCATGAAACATCACGCGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
195 TCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12583588 GGCATTGGCATGCAGAAATATGCAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
260 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
12583653 TGCGCATCTCACCTCTCTAGTCAACGTAGTG-C-CCGCCCGCCCGCCCGCTCGTTTCT-TCGGTT
325 TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCGCCGCCCGCCCGCCCGCTCGTTTCTGTCGGTT
* * * * *
12583715 GGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGATTGAGGGTTGTGGAAGCGCA
390 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACA
* * * *
12583780 TGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGAAGCATCA
455 TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * * *
12583845 CAGTAGAACCTTG-CCGGCGGCATTAGGGTTCCGGCGATCGGGGGCGCCGGCGGGGGTGTGCGCA
520 C-GGAGAACC-TGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGG-GGGGGTGTGCGCA
* * * *
12583909 CATAATGTGCGATGGGTACTGGTAGTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCG
581 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
12583974 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
646 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
12584039 GTTTGAA
711 GTCTG-A
*
12584046 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
1 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * **
12584111 TTGGGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTCAGTTCCAAAACTCCTTCCGA
66 TTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGA
*
12584176 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-AAATATGAGTC
130 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGAGTC
* * *
12584240 GTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATAAAAA
194 GTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
12584305 TGGCTTTGGCATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACGCTATCGATCCACAGC
259 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
12584370 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTT-TGCCG
324 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTG-CCGCC-GCCCGCCCGCCCGCTCGTTTCTGTCG
*
12584434 GTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
387 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
12584474 AGACTGGACT
Statistics
Matches: 1659, Mismatches: 176, Indels: 55
0.88 0.09 0.03
Matches are distributed among these distances:
714 5 0.00
715 175 0.11
716 135 0.08
717 80 0.05
718 689 0.42
719 505 0.30
720 7 0.00
721 3 0.00
722 60 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCGCCGCCCGCCCGCCCGCTCGTTTCTGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
A
Found at i:12584655 original size:26 final size:26
Alignment explanation
Indices: 12584603--12584655 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12584593 GTTGACTTAG
* *
12584603 GCATACGGATTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12584629 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12584655 G
1 G
12584656 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12587859 original size:26 final size:26
Alignment explanation
Indices: 12587823--12587873 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12587813 TGACTTAGGA
12587823 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
12587849 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12587874 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:12588742 original size:26 final size:26
Alignment explanation
Indices: 12588706--12588758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12588696 GTTGACTTAG
*
12588706 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12588732 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12588758 G
1 G
12588759 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12589652 original size:26 final size:26
Alignment explanation
Indices: 12589600--12589652 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12589590 GTTGACTTAG
* **
12589600 GCATACGAAGTTCATTCCTAGTTTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
12589626 GCATAC-AGAGTTCATTCCCAGCCTAA
1 GCATACGA-AGTTCATTCCCAGCCTAA
12589652 G
1 G
12589653 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:12591406 original size:26 final size:26
Alignment explanation
Indices: 12591376--12591428 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12591366 GTTGACTTAG
*
12591376 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
12591402 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12591428 G
1 G
12591429 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12592510 original size:905 final size:907
Alignment explanation
Indices: 12590510--12594221 Score: 4796
Period size: 905 Copynumber: 4.1 Consensus size: 907
12590500 TAGGCATATG
* ** * * * * * *
12590510 GAGTTCATTACCA-TCTAAGATTGGATCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTAGGCTCGGGC
** **
12590574 ATGTGCTGGTGCCTTATTTTTCTTCACCGGGGCACCA---TC---G---C--CGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* * * * *
12590628 CGACGGCATTGGGGTTCCGGCGATCCGGGGGGCCGGGGGGGAGTGCGCACTTGATGTGCAATGGG
131 CGACAGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGG
* ** * *
12590693 TGCTGGAACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAATCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
12590758 TAAAGAGCATTTGAGATTTTACAGGTTTAG-TGGCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
261 TAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
12590822 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
12590887 CCAACCAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTATA
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** * * * *
12590951 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCTTGAGAAATAGAAAACGAGTCGCCTTGCCATG
455 AAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
12591016 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTAGCA
520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * *
12591081 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCC
585 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
12591146 GTCTCTCTGGCCGACGTAGTTCCCGCCCGCCTGCCCGCCTGCCCGCCCGCTCGTTTCATCAGTTG
650 GTCTCTCTGGCCGGCGTAG-T---GCCCGCC-G-CCGCCTGCCCGCCTGCTCGTTTCATCGGTTA
* * * * * ** * *
12591211 GCTTAGGCATATGTAGTTCATTCCCAGTCTCAGATTGGACCAGGCCAAGGGTTGCGGCAGCAAGT
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTGCGGCAGTAAGA
* * *
12591276 TTG-GCAGCACACAGAGGGGGACCC-AACAGATTCTCGGCTTACGCATCCTACCCCTCTGGTCGG
774 TTGAGCAGCACACAGAGGGGGACCCGATC-GATCCTCGGCTTACGCATCCTACCCCTCTGGCCGG
* * * *
12591339 CTGAGCACCGGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAAGC
838 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
12591404 ATACG
903 ATACA
* * **
12591409 GATTTCATTCCCAGTCTAAGATCAGATCAGACCG-AGGATTGCGGCTCCACATGCTAGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGG-TTGCGGCAGCACATGCTAGGCTCGGG
* * *
12591473 CATGTGGTGGTGACCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
65 CATGTGCTGGTG-CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
* * ** * * *
12591538 ACCGCCGGTATTGGGGTTCCCACGAAC-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATG
129 ACCGACAGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATG
* ** * *
12591602 GGTGCTGGTAGTTGGCATTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
12591667 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
12591732 CACCTTTTTCAAATGGTCACAAAATCTTGTACACATCGAATTGTTT-GCTGAATTTTTTTGTGCA
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTTAGCTGAATTTTTTTGTGCA
* * *
12591796 TGCCAACAAAAATAAAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTT
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
12591861 TAAAAAATCCCGAACCACAAAAAGTTACGAAAATCGTGAAAAATAGAAAATGCAGTCGTCTTGCC
453 TAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACG-AGTCGTCTTGCC
12591926 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
12591991 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCAT
582 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
12592056 CCCGTCTCTTTGGCCGGTGTAGTGCCCG-TG-CGCAC-GCCCGCCTGCTCGTTTCGTCGGTTAGC
647 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGC-CTGCCCGCCTGCTCGTTTCATCGGTTAGC
** * * * * * *
12592118 TTAGTTATACGGGGTTCATTCCCAGTCTAAGATAGGACTGGACCTG-GGGTTACAGCAGTAGGAT
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGA-CTGAGGGTTGCGGCAGTAAGAT
* * * * * * *
12592182 TGAG-AACACATAGAGGGGGACCCGGTCGATCCTCGGCTTGCGTATCCTGCCCCTAC-GGTCGGC
775 TGAGCAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCCTACCCCT-CTGGCCGGC
* * * *
12592245 TGAGCACCCGTACGCTCGTTTCGTGTGTTGACTAAGGCATACGGAGTTTATTCCCAGTCTAAGCA
839 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*
12592310 TAAA
904 TACA
* *
12592314 GAGTTCATTCCCAGTCTAAGATC-GTACCAGACCGAAGGTTGCGGCAACACATGCTAGGCTCGAG
1 GAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAAGGTTGCGGCAGCACATGCTAGGCTCGGG
* * * * * ** *
12592378 CATGTGCTGGTGCCGCATTTTTCTTCGTAGGGGCATCGTCATTGGAGCATCACCGAAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * *
12592443 CCGATAATATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGG
130 CCGACAGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGG
* * *
12592508 GTGCTGGTGCTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
12592573 TTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12592638 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGTATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
12592703 CCAACAAAAATACAATGATCATGTCTACCACGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTA
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * *
12592768 AAAAATCCCGAACTACAAAAAGTTTTGAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGGCATG
455 AAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
12592833 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
12592898 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTTGCACATTCC
585 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
12592963 GTCTATCTGGCCAGCGTAGTGCCCGCCCGTCTGCCTGCCCGCCTGCCCGCCCTCTCGTTTCATCG
650 GTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CCGCCTGCCCGCCT----G----CTCGTTTCATCG
* * * * * *
12593028 GTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TAGAGGGTTGTGGTAG
705 GTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACT-GAGGGTTGCGGCAG
* * * * * * *
12593092 TAGGATT-AGTAGCACGCAGAGGGGGACTCGATCGATCCCCAGCTTACGCATCCTGCCCCTCTGG
769 TAAGATTGAGCAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCCTACCCCTCTGG
* * * * *
12593156 CCGGCTGAGCGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
834 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
12593221 AAGCATACG
899 AAGCATACA
* * * ** * *
12593230 GAGTTCATTCCCAGTCTAAGATC-GCACCGGACCGAGGGTTACGATAGCACATGCTGGGCTAGGG
1 GAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAAGGTTGCGGCAGCACATGCTAGGCTCGGG
* * *
12593294 CATGTGCTGGTGCCGCATTTTTCTTCGTCGTGGTACCATCGTCGGAGCATCGTCGGAGAACCTGT
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * * *
12593359 CCGGCAGCATTGGGGTTCCAGCAATCGGGGGGGCCGGGGGGGCTTTGCGCACATGATGTGCGATG
130 CCGACAGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCAATG
* *
12593424 GGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCA-CCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
12593488 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
12593553 CAGTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
12593618 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CGAAACTCCTT-TGAAAAAAATTT
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTT
* * *
12593681 TAAAAAATTCCGAACCGCAAAAAGTTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
453 TAAAAAATCCCGAACCACAAAAAG-TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
12593745 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
***
12593810 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
582 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** * * *
12593875 CCCGTCTCTCTAGTCGGCGTAGTGCCCG-C-CCGCCCACTCGCCTGCTCGTTTCGTCGGTTAGCC
647 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCTGCCCGCCTGCTCGTTTCATCGGTTAGCT
* * * * *
12593938 TAGGCATACGGAGTTCATTCCCAATCTAAGATTGAACTAGACTGAAGGTTGCGGCAATAAGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTGCGGCAGTAAGATTG
* * * * *
12594003 A-CAGCACGCAGAGGGGGAACCGACCGATCCTCTGCTTGCGCATCCTACCCCTCTGGCCGGCTGA
777 AGCAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCCTACCCCTCTGGCCGGCTGA
* * * *
12594067 GCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAAGCATAC
842 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
12594132 A
907 A
* * * *
12594133 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAATGCTAGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTAGGCTCGGGC
* *
12594198 ATGTGTTGGTGCCACATTTTTCTT
66 ATGTGCTGGTGCCGCATTTTTCTT
12594222 TGCGGCTTGC
Statistics
Matches: 2440, Mismatches: 323, Indels: 96
0.85 0.11 0.03
Matches are distributed among these distances:
899 13 0.01
900 49 0.02
901 23 0.01
903 257 0.11
904 228 0.09
905 554 0.23
906 9 0.00
907 4 0.00
908 10 0.00
909 5 0.00
910 2 0.00
911 266 0.11
912 90 0.04
913 154 0.06
914 1 0.00
915 219 0.09
916 480 0.20
917 76 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (907 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTAGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
CGACAGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCTGCCCGCCTGCTCGTTTCATCGGTTAGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTGCGGCAGTAAGATTGAGCA
GCACACAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCCTACCCCTCTGGCCGGCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
Found at i:12593226 original size:26 final size:26
Alignment explanation
Indices: 12593197--12593249 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12593187 GTTGACTTAG
12593197 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12593223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12593249 G
1 G
12593250 ATCGCACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12594136 original size:26 final size:26
Alignment explanation
Indices: 12594100--12594152 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12594090 GTTGACTTAG
*
12594100 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
*
12594126 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
12594152 G
1 G
12594153 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:12594486 original size:26 final size:26
Alignment explanation
Indices: 12594456--12594531 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
12594446 GACTTAGGCG
12594456 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
12594482 TACGGAGTTCATTCCCAATCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
* *
12594508 TATGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12594532 ATCAGACCGG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12597175 original size:26 final size:26
Alignment explanation
Indices: 12597139--12597239 Score: 202
Period size: 26 Copynumber: 3.9 Consensus size: 26
12597129 GTTGACTTAG
12597139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12597165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12597191 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12597217 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
12597240 CAAGATCGAA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12599809 original size:870 final size:883
Alignment explanation
Indices: 12598099--12600618 Score: 2944
Period size: 870 Copynumber: 2.8 Consensus size: 883
12598089 AGGCATACGG
* * * * * * * * *
12598099 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGAGTTGCAGTAGCACATGCT--GCATTCGGG
1 AGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACAGCAGCACATGCTAGGC--TCAGG
* * * * ** * *
12598162 CATGTACTGGTGCCGTATTTTTCTTTGC-CGGGGCACCGTCGTAGAAGCATCATCGGAGAACCTG
64 CATGTGCTGGTGCTGCATTTTTCTTCGCTCGGGGCACCGTCGCCGGAGCATCGTCGGAGAACCTG
* * * * * *
12598226 ACCGACGGCATTGGGGTTCCGGCGATCAGGGGGCC-AGGGAGTGTGTGCACATGATGTGCGATGG
129 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
12598290 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCAC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
12598355 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTCTCTGAAATAGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
12598420 ACTTTTTTCGAATGGTGACAAAATCTTGTACAATTCGAGTTTTTAGCTGATTTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATG
* *
12598485 CCA-ACAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAGAAAAATTTTA
389 CCACA-AAAATACAA-GATCA----TA-CAA---T--GGCCAAAACTCCTTCCAAAAAAATTTTA
*
12598549 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCATG
442 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
** * *
12598614 AAACTTCACGTGAAGGCTTAA-AAACCATTATATGAATTTACAACCCATAAAAATGGCATTGGCA
507 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * **
12598678 TGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGCTCCACGGCTTGCGCATCAT
572 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
12598743 GTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGTCCGCTCGTTCGTCAATTGGCTTA
637 G--TCGC-GGCCGGCCTAGTG-CCGCCCGCCCGCCCG--C-T-CG-T--TTCGTCAGTTGGCTTA
* * * * * * * *
12598808 GGCTTATGGAGTTCATTCCCAGTCTCAGATCAGATCGAACCGAGGGTTGTGGCAGCAAGATCGAT
691 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
12598873 AGCACGCAGAGGGGGACTCGTCCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCG
756 AGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * *
12598938 CCTGCACGCTTGTTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGA
821 CCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-A
* *
12599002 AGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTAC-GCTAGCACATGCTAGGCTCAGGC
1 AGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACAGC-AGCACATGCTAGGCTCAGGC
* * *
12599066 ATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCGTCGCCGGAGCATCGCCAGAGAACCTGA
65 ATGTGCTGGTGCTGCATTTTTCTTCGCTCGGGGCACCGTCGCCGGAGCATCGTCGGAGAACCTGA
* * * ** * * *
12599130 CTGGCGGCATTAGGGTTTCGGTGATCAGGGGGGCCGGGGGGGTGTGCGTACATGATGTGTGGTGG
130 CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
12599195 GTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
12599260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12599325 ACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGATTTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATG
* * *
12599390 -C-C-AAAA-A-AA-AT-A-A-AA-GGCCAAAACTCCTTTCAAAAAAATTTTCAAAAATCTCAAA
389 CCACAAAAATACAAGATCATACAATGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAA
* *
12599445 CCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
454 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
12599510 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCA-GATAGAAATAT
519 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATAT
* *
12599574 GAGGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTC-C-GCCGG
583 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCGCGGCCGG
** * ** *
12599637 CCT-GT-CCGCCCGCCCATCCACTCGTTTTATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAG
648 CCTAGTGCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** * *
12599700 TCTAAGATCAGATCAAATCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAAGGGGGACCCGAC
713 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGAC
* * * * * *
12599765 TGATCCCCGGCTTGTGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
778 TGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTTGTTTCGTGGGT
* *
12599830 TGACTTAGGCATACGGAGTTCATTGCCAGTGTAAGCATACA
843 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* ** * * * *
12599871 GAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGCTTAC-GACAGCACATGCTGGGCTCGGG
1 -AGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACAG-CAGCACATGCTAGGCTCAGG
* * * *
12599935 CATGTGCTGGTGCTGTATTTTTCTTCGC-CGGGGCACCATCACCGGAGCATCGTCTGAGAACCTG
64 CATGTGCTGGTGCTGCATTTTTCTTCGCTCGGGGCACCGTCGCCGGAGCATCGTCGGAGAACCTG
* * * *
12599999 ACCGACGGCATTGGGTTTCCGATGATCGGGGGG-C-GAGGGGTGTGCGCACATGATGTGCGATGG
129 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
12600062 GTGGTGGTACTTGGCCCTTATTTTAGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
12600127 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
** * * *
12600192 ACTTTTTTCAAATAAAT-GCAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
324 ACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAT
* *
12600256 GCCAACAAAAATACAAGGATCATGTGTACCAAGTTTGGTGCCAAAACTCCATCCGAAAAAATTTT
388 GCC-ACAAAAATACAA-GATCA----TA-CAA---T-G-GCCAAAACTCCTTCCAAAAAAATTTT
* * *
12600321 AAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
441 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
12600386 GAAACTTCACGTGAAGGCTTAAGTGACCATTGCATGAATTTACAAGCCATAAAAATGGAATTGGA
506 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
12600451 ATGCAGAAATATGAAGATGTACCTAAACCAACCTACCACCCTATAGATCCACGGCTTGTGCATGC
571 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-C
* * * * * *
12600516 CATC-TCTCTGGCCGACGTAGT---GTCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
635 C--CGTCGC-GGCCGGCCTAGTGCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
* * * * *
12600577 CGGAGTTCATTCCAAGTCTAATATCAGACTGGATCGAGGGTT
697 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
12600619 ACAGCAGCAC
Statistics
Matches: 1412, Mismatches: 162, Indels: 96
0.85 0.10 0.06
Matches are distributed among these distances:
867 202 0.14
868 3 0.00
869 7 0.00
870 316 0.22
871 5 0.00
872 2 0.00
873 4 0.00
874 1 0.00
875 3 0.00
876 1 0.00
877 11 0.01
879 2 0.00
880 7 0.00
881 1 0.00
882 1 0.00
883 4 0.00
884 107 0.08
885 95 0.07
888 1 0.00
889 197 0.14
890 5 0.00
891 2 0.00
892 3 0.00
893 68 0.05
894 6 0.00
895 2 0.00
897 1 0.00
898 2 0.00
900 2 0.00
901 1 0.00
902 5 0.00
903 126 0.09
904 8 0.01
905 211 0.15
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
AGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACAGCAGCACATGCTAGGCTCAGGCA
TGTGCTGGTGCTGCATTTTTCTTCGCTCGGGGCACCGTCGCCGGAGCATCGTCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCC
ACAAAAATACAAGATCATACAATGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACC
GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCGCGGCCGGCCT
AGTGCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACTGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTTGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
Found at i:12599868 original size:26 final size:26
Alignment explanation
Indices: 12599838--12599890 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12599828 GTTGACTTAG
* * *
12599838 GCATACGGAGTTCATTGCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12599864 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12599890 G
1 G
12599891 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12600910 original size:710 final size:711
Alignment explanation
Indices: 12599864--12601322 Score: 2144
Period size: 710 Copynumber: 2.0 Consensus size: 711
12599854 GCCAGTGTAA
* * * *
12599864 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGCTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGCTTACGACAGCACATACTGGG
* * *
12599929 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCTGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGCCACCATCACCGGAGCATCATCTGAGA
* *
12599994 ACCTGACCGACGGCATTGGGTTTCCGATGATCGGGGGGCGAGGGGTGTGCGCACATGATGTGCGA
131 ACCTGACCGACGACATTGGGTTTCCGACGATCGGGGGGCGAGGGGTGTGCGCACATGATGTGCGA
* ** * *
12600059 TGGGTGGTGGTACTTGGCCCTTATTTTAGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTAATACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
12600124 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAACAGG
* * *
12600189 GACACTTTTTTCAAATAAAT-GCAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
326 GACACTTTTTTCAAAT-AATCACAAAATCTCGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTG
* * * *
12600253 CATGCCAACAAAAATACAAGGATCATGTGTACCAAGTTTGGTGCCAAAACTCCATCCGAAAAAA-
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCC-AAAAAAT
* * *
12600317 TTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTG
*
12600382 CCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGCATGAATTTACAAGCCATAAAAATGGAAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGAAT
* *
12600447 TGGAATGCAGAAATATGAAGATGTACCTAAACCAACCTACCACCCTATAGATCCACGGCTTGTGC
584 TGGAACGCAGAAATATGAAGATGTACCTAAACCAACCTACCACCCTATAGATCCACGGCTTATGC
* * *
12600512 ATGCCATCTCTCTGGCCGACGTAGTGTCCGCCCG-C-C-TGCTCGTTTCGTCGGTTGGCTTAG
649 ATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCACATGCTCGTTTCGTCGGGTGGCTTAG
* * *
12600572 GCATACGGAGTTCATTCCAAGTCTAATATCAGACTGGATCGAGGGTTAC-AGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGCTTACGA-CAGCACATACTGG
* *
12600636 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCCACCATCATCGGAGCATCATC-GAA
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGCCACCATCACCGGAGCATCATCTG-A
* *
12600700 GAACCTGACCGGCGACATTGGGGTTT-CGACGATCAGGGGGGCCG-GGGGATGTGCTCACATGAT
129 GAACCTGACCGACGACATT-GGGTTTCCGACGATC-GGGGGG-CGAGGGG-TGTGCGCACATGAT
* *
12600763 GTGCGATGGGTGCTAATACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTAATACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACT
12600828 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGA
* * * ** **
12600893 AACGGGGATAGTTTTTTCAAATGGTCACAAAATCTCGTACACTTTGAGTTTTTAGCTGAATTGTT
320 AACAGGGACACTTTTTTCAAATAATCACAAAATCTCGTACACTTCAAGTTTTTAGCTGAATTGTT
** *
12600958 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTTTCAAGTTTGGGGCCAAAAATCCTTCCAAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCAAA
* *
12601023 AAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGT
450 AAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGT
*
12601088 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATG
* * * * *
12601153 GCATTGGCACGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GAATTGGAACGCAGAAATATGAAGATGTACCTAAACCAACCTACCACCCTATAGATCCACGGCTT
* * *
12601218 ATGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCACCCACATGCTCGTTTCGTTGGGT
645 ATGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG-----CCACATGCTCGTTTCGTCGGGT
12601283 GGCTTAG
705 GGCTTAG
* *
12601290 GCATATGGAGTTCATTCCCAGTCTACGATCAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA
12601323 TCGGACCAAG
Statistics
Matches: 667, Mismatches: 68, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
707 2 0.00
708 136 0.20
709 23 0.03
710 453 0.68
716 1 0.00
717 1 0.00
718 51 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGCTTACGACAGCACATACTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGCCACCATCACCGGAGCATCATCTGAGA
ACCTGACCGACGACATTGGGTTTCCGACGATCGGGGGGCGAGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTAATACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAACAGG
GACACTTTTTTCAAATAATCACAAAATCTCGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCAAAAAATTT
TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGAATTG
GAACGCAGAAATATGAAGATGTACCTAAACCAACCTACCACCCTATAGATCCACGGCTTATGCAT
CCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCACATGCTCGTTTCGTCGGGTGGCTTAG
Found at i:12601479 original size:26 final size:26
Alignment explanation
Indices: 12601449--12601501 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12601439 GTTGACTTAG
*
12601449 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12601475 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12601501 G
1 G
12601502 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12607225 original size:11 final size:11
Alignment explanation
Indices: 12607211--12607238 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
12607201 TCGGGGCACG
12607211 ATCGCCGGAGC
1 ATCGCCGGAGC
12607222 ATCGCCGGAGC
1 ATCGCCGGAGC
12607233 ATCGCC
1 ATCGCC
12607239 AGAGAACTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.39, G:0.32, T:0.11
Consensus pattern (11 bp):
ATCGCCGGAGC
Found at i:12608026 original size:26 final size:26
Alignment explanation
Indices: 12607989--12608041 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12607979 GTTGACTTAG
12607989 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
12608015 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12608041 G
1 G
12608042 ATCGGCCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12608450 original size:901 final size:897
Alignment explanation
Indices: 12607103--12613681 Score: 8067
Period size: 884 Copynumber: 7.4 Consensus size: 897
12607093 GTTGACTTAG
* * * *
12607103 GCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCAGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
12607167 GCTCGGGCATGTGCTAGTGCTGTATTTTTCTTCATCGGGGCACGATCGCCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT---C---G
* * *
12607232 CATCGCCAGAGAACTTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTG
124 C--CG--A-AGAACCTGA-CCGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTG
* *
12607297 TGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGG-CCCCTATCCCTCATCAAAC
180 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
12607361 CTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
245 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
12607425 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
310 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** * * *
12607490 CTGAA-TTTTTTGTGCATATCAAAAAAATACAAGGATCACGTTTACCAATTTTGAGGCCAAAACT
375 CTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
12607554 CCTTCCAAAAAAATTTAAAAAAATACCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
440 CCTTCCAAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
12607619 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
504 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
12607684 AGAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
569 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* ** * * *
12607749 CCACGACTTTTGCATCCCGTCTCTCTGGCTGGCTTAGTACCCGCCCGCACGCCTGCCCGCTCGTT
634 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCG--CGCCTGCCCGCTCGTT
* * * * * ** *
12607814 TCGTCGGTTAGCTTAGACATACGGAGTTAATTCCCAGTCTAAGAT-TGAACCAAACCGAGGGTTG
697 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTG
** ** * *
12607878 TGGCAGCAGGATCGGCAGCACATAGAGGAAGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCC
761 TGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCC
* * *
12607943 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCC
826 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
12608008 AGTCTAA
891 AGTCTAA
* * * *
12608015 GCATACGGAGTTCATTCCTAGTCTAAGATC-GGCCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12608079 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-TCCAGGGCACCATCGCCGGAGCATCGCCGAAA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT-CGGGGCACCATCGCCGGAGCATCGCCGAAG
12608143 AACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGTGGGCCGGGGGGCTGTGCGCACATGATGT
130 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGG-TGTGCGCACATGATGT
* * *
12608208 GTGATGGGTG-TCGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAGACCTCGAGAACTC
192 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12608272 ACACCCCCTTAAAAAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
12608337 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * *
12608401 TGTGCATATCAAAAAAATACAAGGATCACGTTTACCAATTTTGAGGCCAAAACTCCTTCCAAAAA
386 TGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
12608466 AATTTAAAAAAATACCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
451 AATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
12608531 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCACAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12608596 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12608661 GCATCCCGTCTCTCTGGCCAACGTAGTGA-CCGCCCGTCCTCCCGCCCGCTCATTTAATCGGTTG
645 GCATCCCGTCTCTCTGGCCGACGTAGT-ACCCGCCCG--CGCCTGCCCGCTCGTTTCATCGGTTG
* * * * * * *
12608725 GCTTAGGAATATGGATTTCATTCCCAGTCTAAGATCAGACCAGAGTAAGGGTTGTGGCAGTAGGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGA
* ** * * * * * * *
12608790 TCGGCAGCACGTAGAGGGGGACCCTTTTGATCCCCGGCTTACGCATCTCACCCCTCTGGTCGGTT
772 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
*** * * *
12608855 GAGCATTCGCACGCTCGTTTCATGCGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
12608916 GCATACCGAGTTCATTCCCAGTCTAAGATCAGACCTGATCGAGGGTTGCAACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
12608981 CTCGGGCAGGTGTTGGTGTCACATTTTTCTTCG-CTAGGGCACCATCGTCAGAGCATCGCCGGAA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCC-GAA
* * * * * * *
12609045 -AACCTAACAGCGGCATTGGGGTTCCGACGTTCGAGGGACCAGGGGGGTGTGCGCACGTGACGTG
129 GAACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
12609109 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTAT-CC-C-TC--A--TC----A---A-
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12609159 A---CC-T------C----GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12609210 GTGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * ** *
12609275 TGCATGCAAAAAAAATATACAAGCATCACCTCTACCAGGTCT-GGGAAAAAACTCCTTCCGAAAA
388 TGCATGC-CAAAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** * *
12609339 AATTTTAAAAAATCTCGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACTAGTCGTCT
451 AATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* **
12609404 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12609469 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
12609534 ACATCTCATCTCTCTGGCCGACGTAGTGCCCGCCCGC-CC-GCCCACACGTTTCGTCGGTTGGTT
645 GCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCGCCTGCCCGCTCGTTTCATCGGTTGGCT
* * *
12609597 TCGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC--A-GATT-T----GC--GA---
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCG
* ** *
12609649 -CAGCACGCAGAGGGGGACCC-AGCCGATCTTCGACTTGCGCATCCCGCCCCTATGGCCGGCTGA
775 GCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
12609712 GCGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCTAGTCTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12609771 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12609836 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* ** *
12609901 ACCTGACCGACGTCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
131 ACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
12609966 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCACCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
12610031 CCCCTTAAAGAGCATTTGATATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12610096 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTCA-CTTGAATTTTTTTGT
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGT
* * *
12610160 ACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAA
389 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * *
12610225 TTTTGAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGACTCGTCTCG
453 TTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
12610290 TCATGAAAATTCACGTGAAAGCTTAAGGGACCATTATATGAATTTACAAGCCATGAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * * * *
12610355 TGGCACACAGAAATATGAAGATATGCCTAAAGCAACCTACCACCCTAACAATACACGGCTTGCGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * ** * *
12610420 ATCCCGTCTCTCTGGACGATGTAGTGCCCGCCCGC-CC-GCTTGCTCG-TTCTGTCGATTGGCTT
647 ATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCGCCTGCCCGCTCGTTTC-ATCGGTTGGCTT
* * * ** * * ** *
12610482 GGGCATATGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCAGCAGTAGGATCGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGG
* * * ** * * * * *
12610547 TAGCACACAGAGGTGGACCCTTTCGATCCCTGGCTTGCGCATCCC-TCCCTTTGGCCGGTTGAGC
776 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
12610611 GTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAG--T--
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12610664 -C-TA---AG---------A-T-T--G----GACCAGACTGAGGGTTGCAGCAGCACATACTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
12610707 CTTGGGCAAGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* * * * *
12610772 ACCTGACCGGCGACATTGGGGTTTCGACAATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGT
131 ACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
12610837 GATGGGTGCTGGTATTTGGCCTTTATATTGGCCCCCTTTCCTTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
12610902 CCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTATCTTAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12610967 GGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTGTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12611032 GCATGCCAACAAAAATACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
** * *
12611097 TTTTAAAATACCCCAAACCGTAAAAAGTTTAAAAAATCGA-GAAAAATAGAAAACGAGTCGTCTT
453 TTTTAAAA-AATCCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTT
*
12611161 GCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12611226 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
12611291 CATCTCGTCTCTCTGGCCGGCGCAGTGCTCGCCCGTCCGCCTTCCTGTCCGCTCATTTCATCGGT
646 CATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCG--CG----CCTGCCCGCTCGTTTCATCGGT
* * * *
12611356 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGACAGCAA
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAG
* * * * *
12611421 GATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCATTTGGCCGA
770 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
12611486 CTGAGCACCCGTAGGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
12611549 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12611614 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCGCC-AGAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGA-AG
* * *
12611678 AACCTGACCGACAGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGT
130 AACCTGACCG-CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * *
12611743 GCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCGGTC-AACGTCAAGAACTC
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTC
* * *
12611807 ACACCACCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12611872 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12611937 TGTGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCAAAA
386 TGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * ** ** *
12612002 AAATTTTAAAAAATCTGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCT
450 AAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
12612067 TGCCATGAATCTTTACGT--A-----AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12612125 ATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCATGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * **
12612190 TCATCCTGTCTCTCTAGCCGAC---GTA---G---G-GCCTGCCCATTCGTTTCATCGGTTGGCT
645 GCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCGCCTGCCCGCTCGTTTCATCGGTTGGCT
* * * *
12612245 TAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGCAGGATTG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCG
* * ** * *
12612310 ACAGCACGCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGAA
775 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
12612375 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12612433 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
12612498 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGTACCATCGCCGGAGCATTGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* * * * *
12612563 ACCTAACCAACGACATTGGGGTTCCGACGATCAGGGGGGCCGGGGGG-GTGGCCCAGATGATGTG
131 ACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGT-GCGCACATGATGTG
* * *
12612627 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACATTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12612692 ATCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGATGTTTGAAA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-TGTCTGAAA
* * * *
12612756 TGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCAACTTTTTAACTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12612821 GGGCGTGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
387 GTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
12612886 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12612951 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12613016 TTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCT
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** *
12613081 CATCCTGTCTCTCTAGCTGACGTAGT----------GCCTGCCCATTCGTTTCATCAGTTGGCTT
646 CATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCGCCTGCCCGCTCGTTTCATCGGTTGGCTT
* * * * *
12613136 AGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATTGA
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGG
* ** *
12613201 CAGCACGCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGAGC
776 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
12613266 GCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12613323 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
12613388 CTCGAGCATCTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCTGCAGCATTACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* * * * * *
12613453 ACCTAACCGACGGTATTGGGGTTCTGGCGATCCGGGGGGCCGAGGGGTGTGCACACATGATGTGC
131 ACCTGACCG-CGGCATTGGGGTTCCGACGAT-CGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
12613518 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCT-GAAGAACTCAC
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCAC
* * *
12613582 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12613647 GGGGACACTTTTTTCAAATGGTCGCAAAATCTTGT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
12613682 TTCGTGGGTT
Statistics
Matches: 4944, Mismatches: 583, Indels: 302
0.85 0.10 0.05
Matches are distributed among these distances:
854 2 0.00
855 272 0.06
856 26 0.01
857 1 0.00
858 1 0.00
859 2 0.00
860 1 0.00
861 1 0.00
862 2 0.00
865 1 0.00
866 4 0.00
867 1 0.00
869 54 0.01
870 3 0.00
871 210 0.04
872 477 0.10
873 238 0.05
874 22 0.00
875 2 0.00
877 1 0.00
878 1 0.00
879 3 0.00
880 104 0.02
881 64 0.01
882 74 0.01
883 282 0.06
884 719 0.15
885 3 0.00
886 3 0.00
887 5 0.00
888 3 0.00
889 2 0.00
890 656 0.13
891 8 0.00
892 2 0.00
893 4 0.00
894 3 0.00
895 2 0.00
897 66 0.01
898 43 0.01
899 51 0.01
900 235 0.05
901 648 0.13
902 85 0.02
903 6 0.00
905 3 0.00
906 1 0.00
907 175 0.04
908 259 0.05
909 4 0.00
910 1 0.00
911 79 0.02
912 29 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
ACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTACCCGCCCGCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12608920 original size:26 final size:26
Alignment explanation
Indices: 12608890--12608942 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12608880 GTTGACTTTG
*
12608890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
12608916 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
12608942 G
1 G
12608943 ATCAGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:12609781 original size:26 final size:26
Alignment explanation
Indices: 12609745--12609797 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12609735 GTTGACTTTG
*
12609745 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12609771 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12609797 G
1 G
12609798 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12612443 original size:26 final size:26
Alignment explanation
Indices: 12612407--12612459 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12612397 GTTGACTTAG
12612407 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12612433 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12612459 G
1 G
12612460 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12613333 original size:26 final size:26
Alignment explanation
Indices: 12613297--12613349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12613287 GTTGACTTAG
12613297 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
12613323 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12613349 G
1 G
12613350 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12613452 original size:890 final size:888
Alignment explanation
Indices: 12610642--12613681 Score: 4289
Period size: 890 Copynumber: 3.4 Consensus size: 888
12610632 GTTGACTTAG
* ** * * *
12610642 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGCAGCACATACTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
12610707 CTTGGGCAAGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* * * * *
12610772 ACCTGACCGGCGACATTGGGGTTTCGACAATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGT
131 ACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGC
* * * *
12610837 GATGGGTGCTGGTATTTGGCCTTTATATTGGCCCCCTTTCCTTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCACA
* *
12610902 CCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTATCTT-AAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGT-TTGAAAT
* * * *
12610966 GGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTGTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTG
* * *
12611031 TGCATGCCAACAAAAATACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
12611096 ATTTTAAAATACCCCAAACCGTAAAAAGTTTAAAAAATCGA-GAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTT-TAAAATC-ATGAAAAATAGAAAACGAGTCGTCT
*
12611160 TGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
12611225 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * *
12611290 GCAT-CTCGTCTCTCTGGCCGGCGCAGTGCTCGCCCGTCCGCCTTCCTGTCCGCTCATTTCATCG
646 TCATCCT-GTCTCTCTAGCCGACGTA--G-T-G-CC-T--GCC--CAT-T-CG----TTTCATCG
* * * **
12611354 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGACAGC
694 GTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGC
* * * * * ** * * * *
12611419 AAGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCATTTGGCC
759 AGGATTGACAGCACGCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCA
* * * * * *
12611484 GACTGAGCACCCGTAGGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
824 GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * * * *
12611549 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
*** * *
12611614 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCGCC-AGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGA-AG
* * * *
12611678 AACCTGACCGAC-AGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATG
130 AACCTAACCGACGA-CATTGGGGTTCCGACGATCGGGGGGGCC-GAGGGGTGTGCGCACATGATG
* * *
12611742 TGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCGGTC-AACGTCAAGAACT
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAAC-TCGAGAACT
* * * **
12611806 CACACCACCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTTTGA
12611871 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGA-TGAATTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-ACTGAATTTT
* * *
12611935 TTTGTGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCAA
385 TTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* ** *
12612000 AAAAATTTTAAAAAAT-CTGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCA
449 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTT-AAAATCATGAAAAATAGAAAACGAGTCG
* *
12612064 TCTTGCCATGAATCTTTACGT--A-----AAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12612122 GGCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCATGGCT
578 GGCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
*
12612187 TGCTCATCCTGTCTCTCTAGCCGACGTAGGGCCTGCCCATTCGTTTCATCGGTTGGCTTAGGTAT
643 TGCTCATCCTGTCTCTCTAGCCGACGTAGTGCCTGCCCATTCGTTTCATCGGTTGGCTTAGGTAT
*
12612252 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGCAGGATTGACAGCAC
708 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATTGACAGCAC
*
12612317 GCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGAACGCCCGT
773 GCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGT
12612382 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
12612433 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
* *
12612498 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGTACCATCGCCGGAGCATTGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* * * * *
12612563 ACCTAACCAACGACATTGGGGTTCCGACGATCAGGGGGGCCG-GGGGGGTGGCCCAGATGATGTG
131 ACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGTGT-GCGCACATGATGTG
* *
12612627 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACATTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-TCGAGAACTCAC
* *
12612692 ATCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGA-TGTTTGAAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-ACTGTTTGAAA
* * *
12612756 TGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCAACTTTTTAACTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
* *
12612821 GGGCGTGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
388 GTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
12612886 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTT-TAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12612951 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
12613016 TTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCT
582 TTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCT
* *
12613081 CATCCTGTCTCTCTAGCTGACGTAGTGCCTGCCCATTCGTTTCATCAGTTGGCTTAGGTATACGG
647 CATCCTGTCTCTCTAGCCGACGTAGTGCCTGCCCATTCGTTTCATCGGTTGGCTTAGGTATACGG
*
12613146 AGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATTGACAGCACGCAG
712 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATTGACAGCACGCAG
12613211 AGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGTACGC
777 AGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGTACGC
*
12613276 TCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
12613323 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
12613388 CTCGAGCATCTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCTGCAGCATTACCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
** * * * *
12613453 ACCTAACCGACGGTATTGGGGTTCTGGCGATCCGGGGGGCCGAGGGGTGTGCACACATGATGTGC
131 ACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGC
*
12613518 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAAC-CTGAAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTC-G-AGAACTCAC
* *
12613582 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTTTGAAAT
*
12613647 GGGGACACTTTTTTCAAATGGTCGCAAAATCTTGT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
12613682 TTCGTGGGTT
Statistics
Matches: 1919, Mismatches: 184, Indels: 77
0.88 0.08 0.04
Matches are distributed among these distances:
882 74 0.04
883 251 0.13
884 330 0.17
885 3 0.00
888 2 0.00
889 3 0.00
890 659 0.34
891 6 0.00
892 3 0.00
894 1 0.00
895 2 0.00
896 1 0.00
898 1 0.00
900 117 0.06
901 2 0.00
905 1 0.00
906 1 0.00
907 202 0.11
908 256 0.13
909 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGA
ACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTTTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCTCATC
CTGTCTCTCTAGCCGACGTAGTGCCTGCCCATTCGTTTCATCGGTTGGCTTAGGTATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATTGACAGCACGCAGAGGG
GGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGTACGCTCGT
TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:12615704 original size:26 final size:26
Alignment explanation
Indices: 12615665--12615717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12615655 GTTGACTTAG
*
12615665 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
12615691 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
12615717 G
1 G
12615718 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:12615707 original size:902 final size:892
Alignment explanation
Indices: 12613680--12616453 Score: 3830
Period size: 901 Copynumber: 3.1 Consensus size: 892
12613670 GCAAAATCTT
** * * * * *
12613680 GTTTCGTGGGTTGGCTTAGTCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGT
1 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
** * * * * *
12613745 TATGGTAGCAGGATTGACAGCACGCAGAGGGGGACCCGATAGATCCCCGTCTTGTGCATCCCGCC
66 TGCGGCAGCAGGATTGACAGCATGCAGAGGGGGACCCGATCGATCCCGGT-TTGCGCATCCCGCC
* * * * *
12613810 CATCTGGCCGGCTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTC
130 CCTCTGGCCGGCTGAGCGCACGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
* * * *
12613875 CCAGTCTAAGCATAC-ATAGTTCATTCCCAGTCTCAGATCGGACTGGACCAAGGGTTGCGACAGC
195 CCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGC
* * * * **
12613939 ACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCATCGTCGGAGCA
259 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGCACCATCACCGGAGCA
* *
12614004 TCGTCGGAGAACCGGACCGGCGGGATTGGGGTTCC-GACGATCAGGGGGCCCGGGGGGGTGTGCG
323 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAG-CGATCAGGGGG-CC-GGGGGGTGTGCG
* * *
12614068 CACATGATGTCCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
385 CACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12614133 -TAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTAA
450 CT-AGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
12614197 AATGTCTTAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
513 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* ** * *
12614262 TCAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTAAAAAATTTTAGGGCCAAAAC
578 T-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAAC
*
12614327 TTCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAA
641 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAA
* *
12614392 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGA
706 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
12614457 AATAAAAACGG-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGA
771 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
12614521 TCCATGGCTTCCACATTCCGTCTCTTTGGCCGGCGTAGTGCTCGCCCGCCCCACCCGCCTGCTC
836 TCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGC-CG-CCG---C-CCCGCCCGCTC
* * * *
12614585 GTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATC-AGACCAGACTGAAGG
1 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGG
* * * *
12614649 TTGCGGTAGCAGGATTGACAACATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCACATCCCGC
65 TTGCGGCAGCAGGATTGACAGCATGCAGAGGGGGACCCGATCGATCCC-GGTTTGCGCATCCCGC
* * * * **
12614714 TCCTTTGGCCGGCTAAGCGCACGTACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTTTT
129 CCCTCTGGCCGGCTGAGCGCACGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
* * ** *
12614779 CCCAGTCTAAGCAAATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGC
194 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGC
* *
12614844 ACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCA
259 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGCACCATCACCGGAGCA
* * *
12614909 TCATCGAAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCAGGGGAGCCGGGGGGTGTGCACA
323 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCAGGGG-GCCGGGGGGTGTGCGCA
*
12614974 CATGATGTACGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT
387 CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT
* *
12615039 AGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAAGTGTGCTGCCAGTAGCCATTAAAGT
452 AGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
12615104 GTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
516 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
* * *
12615169 TTTGTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCT
581 TTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* ** *
12615234 TTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-G
645 TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
12615298 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
710 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* **
12615363 AAAATGGCATTGGCACGCAAAAATATGAAGATGTGAATAAACCCACCTACCACCCTATCGATCCA
775 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
12615428 CGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGTCCGCCCGTCTGCCCGCTC
840 CGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTG-CCG-CCGCCC--C-GCCCGCTC
* * *
12615487 GTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACC-GAATCGAGGG
1 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGG
* * *
12615551 TTGCGGCAGCAGGA-TCAGCAGCATGTAGAGGGGGACTCGATCGATCCTCGGTTTGCGCATCCCG
65 TTGCGGCAGCAGGATTGA-CAGCATGCAGAGGGGGACCCGATCGATCC-CGGTTTGCGCATCCCG
* * * ** * * *
12615615 CCCCTCTAGTCGACTGAGCGTTCGCACTCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
128 CCCCTCTGGCCGGCTGAGCGCACGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * * * *
12615680 TCCCAGTCTAAGCATACGGACTTCATTCCCAGTCTAAGAT-TGAACTGGACTGAGGGTTACGGCA
193 TCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGCGGCA
**
12615744 GCACATGCTAAGC-CTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGCACCATCACCGGAG
257 GCACATGCTGGGCTC-GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGCACCATCACCGGAG
* * ** *
12615808 CATCGTCGGAGAACCTGACTGGTGGCATTAAGGTTCCAACGATCGAGGGGGCCGGGGGGTGTGCG
321 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATC-AGGGGGCCGGGGGGTGTGCG
* *
12615873 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTAT-CTTCATCAAACC
385 CACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACC
* * * *
12615937 TCGAGAGCTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCGTTAA
449 TCTAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
12616002 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
513 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
12616067 TAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAACCTC
578 TAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
*
12616132 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAA
643 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
* * *
12616197 TGAGTCGTCTTACCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
708 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
12616262 TAAACATGGCATTGACACGTAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATC
773 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
12616327 CACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTAGTG-C-CCG-CCCGCCCGCTC
838 CACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTAGTGCCGCCGCCCCGCCCGCTC
* * * * *
12616379 GTTTCGTCAGTTGGTTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGT
1 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
12616444 TGCGGCAGCA
66 TGCGGCAGCA
12616454 CATGCTGGGT
Statistics
Matches: 1662, Mismatches: 183, Indels: 61
0.87 0.10 0.03
Matches are distributed among these distances:
892 73 0.04
893 2 0.00
895 2 0.00
896 3 0.00
898 1 0.00
899 2 0.00
900 125 0.08
901 399 0.24
902 340 0.20
903 172 0.10
904 225 0.14
905 314 0.19
906 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
TGCGGCAGCAGGATTGACAGCATGCAGAGGGGGACCCGATCGATCCCGGTTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGCGCACGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
CAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGCACCATCACCGGAGCATCG
TCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCAGGGGGCCGGGGGGTGTGCGCACATG
ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAA
CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCGGCGTAGTGCCGCCGCCCCGCCCGCTC
Found at i:12617046 original size:707 final size:710
Alignment explanation
Indices: 12615691--12618558 Score: 4263
Period size: 711 Copynumber: 4.0 Consensus size: 710
12615681 CCCAGTCTAA
* * * * *
12615691 GCATACGGACTTCATTCCCAGTCTAAGATTGAACTGGACTGAGGGTTACGGCAGCACATGCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
* **
12615756 C-CTGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGCACCATCACCGGAGCATCGTCGGAG
66 CTC-GGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
** *
12615819 AACCTG-ACTGGTGGCATTAAGGTTCCAACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGT
130 AACCTGAAC-GGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
12615883 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTAT-CTTCATCAAACCTCGAGAGCTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12615947 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTGAA
258 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
12616012 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
12616076 TATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAA
388 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAA
* * ** *
12616141 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
12616206 TTACCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12616271 CATT-GACACGTAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTT
583 CATTGGA-ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
12616335 GCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGTTTAG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * * * *
12616398 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
* * * * **
12616463 TTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTTGGGGCACCATCGTATGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
12616528 ACCTGAACGGTGGCATTGGGGTTCCAACGATC-GGGGGGCCGGGGGGTGTACGCACATGATGTGC
131 ACCTGAACGGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
12616592 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12616657 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATG
261 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
12616722 GGGATACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * * * *
12616787 GCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTAGGGCCGAA-CACCTTCTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAAA
* * *
12616851 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
12616916 CCGA-GAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 CC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12616980 TTGGAATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12617045 CATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCAGTCGGCTTAG
650 CATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* ** * * * *
12617110 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
* *
12617175 CTCGGGAATGTGCTGCTGCCATATTTTT-TTCGTCGGGGCACCATCGT-----CA------GAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
12617228 ACTTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGTGGGGGGTGTGCGCACATGATGT
131 ACCTGAACGGTGGCATTGGGGTTCCAACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
*
12617293 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12617358 CACCCTCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
259 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
12617423 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12617488 ATGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAACTTCCTGCTGAAAA
389 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
* * * * *
12617553 AATTTTAAAAAATCCCAAACAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
12617618 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12617683 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGC
584 ATTGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12617748 GCATCCCGTCTCTTTGGCCGGCGTAGCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* *
12617810 GCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
* * * * * *
12617875 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCACCATCGTCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * *
12617940 ACCTGACCGACGACATTGGGGTTCCAGCGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGTG
131 ACCTGAACGGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* * * *
12618005 CAATGGGTGCTGGTGCTTGGCCGTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12618070 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCATTAGCCATTAAAGTGTCTTG-AA
260 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAA
* *
12618134 TGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12618199 GTGCATGCCAATAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
389 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
* *
12618264 AATTTTAAAACATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGACTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
12618329 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* **
12618394 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAT
584 ATTGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12618459 GCATCCCATCTCTCTGGCCAGTGTGGTGCCCGCCCGCCCGTCCGCTCGTTTCGT-AGGTTGGTTT
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCTCGTTTCGTCA-GTTGGCTT
12618523 AG
709 AG
12618525 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
12618559 TGAACTGAGG
Statistics
Matches: 1954, Mismatches: 171, Indels: 64
0.89 0.08 0.03
Matches are distributed among these distances:
700 147 0.08
701 25 0.01
702 1 0.00
703 252 0.13
704 213 0.11
706 12 0.01
707 485 0.25
708 117 0.06
709 2 0.00
710 3 0.00
711 489 0.25
712 154 0.08
713 1 0.00
715 53 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGAACGGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
Found at i:12618235 original size:711 final size:710
Alignment explanation
Indices: 12615691--12618558 Score: 4288
Period size: 707 Copynumber: 4.0 Consensus size: 710
12615681 CCCAGTCTAA
* * * * *
12615691 GCATACGGACTTCATTCCCAGTCTAAGATTGAACTGGACTGAGGGTTACGGCAGCACATGCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
* **
12615756 C-CTGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGCACCATCACCGGAGCATCGTCGGAG
66 CTC-GGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* ** *
12615819 AACCTGACTGGTGGCATTAAGGTTCCAACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12615884 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTAT-CTTCATCAAACCTCGAGAGCTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12615948 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTGAAA
259 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
12616013 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12616077 ATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
389 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
* * ** *
12616142 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
12616207 TACCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12616272 ATTGACACGTAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12616337 GCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGTTTAG
649 GCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * * * *
12616398 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
* * * * **
12616463 TTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTTGGGGCACCATCGTATGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
12616528 ACCTGAACGGTGGCATTGGGGTTCCAACGATC-GGGGGGCCGGGGGGTGTACGCACATGATGTGC
131 ACCTGACCGGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
12616592 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12616657 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATG
261 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
12616722 GGGATACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * * * *
12616787 GCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTAGGGCCGAA-CACCTTCTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAAA
* * *
12616851 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
12616916 CCGA-GAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 CC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12616980 TTGGAATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12617045 CATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCAGTCGGCTTAG
650 CATCCCGTCTCTCTGGCCGGCGTA--G--CGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* ** * * * *
12617110 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
* *
12617175 CTCGGGAATGTGCTGCTGCCATATTTTT-TTCGTCGGGGCACCATCGT-----CA------GAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
12617228 ACTTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGTGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGTGGCATTGGGGTTCCAACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
*
12617293 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12617358 CACCCTCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
259 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
12617423 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12617488 ATGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAACTTCCTGCTGAAAA
389 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
* * * * *
12617553 AATTTTAAAAAATCCCAAACAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
12617618 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12617683 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12617748 GCATCCCGTCTCTTTGGCCGGCGTAGCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
649 GCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* *
12617810 GCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
* * * * * *
12617875 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCACCATCGTCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * *
12617940 ACCTGACCGACGACATTGGGGTTCCAGCGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* * * *
12618005 CAATGGGTGCTGGTGCTTGGCCGTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12618070 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCATTAGCCATTAAAGTGTCTTG-AA
260 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAA
* *
12618134 TGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12618199 GTGCATGCCAATAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
389 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
* *
12618264 AATTTTAAAACATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGACTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
12618329 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
12618394 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAT
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12618459 GCATCCCATCTCTCTGGCCAGTGTGGT-GCCCGCCCGCCCGTCCGCTCGTTTCGT-AGGTTGGTT
649 GCATCCCGTCTCTCTGGCC-G-G-CGTAG--CGCCCGCCCGCCCGCTCGTTTCGTCA-GTTGGCT
12618522 TAG
708 TAG
12618525 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
12618559 TGAACTGAGG
Statistics
Matches: 1953, Mismatches: 173, Indels: 62
0.89 0.08 0.03
Matches are distributed among these distances:
700 148 0.08
701 25 0.01
702 1 0.00
703 252 0.13
704 213 0.11
706 12 0.01
707 486 0.25
708 116 0.06
710 3 0.00
711 475 0.24
712 155 0.08
713 2 0.00
714 2 0.00
715 63 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
Found at i:12621498 original size:707 final size:707
Alignment explanation
Indices: 12620133--12621499 Score: 2001
Period size: 707 Copynumber: 1.9 Consensus size: 707
12620123 AAGCATATGA
* * * * **
12620133 AGTTCATTCCCAGTCTAGGATCGGACTGAACTGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTGGGCCCAAGCA
* * *
12620198 TGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCGTCGGAGAACCTGACCAGCAGCATTGG
66 TGTGCAGGTGCCACATTTTTCTTCACCAGGGCACCATCGACGGAGAACCTGACCAGCAGCATTGG
* * ** * * *
12620263 GGTTCCGGCGATCGGGGGGTCGAGGGGGAGTGCGCACATGATGTGCGATAGGTGTTGGTACTTGT
131 GGTTCCGACGATCGGGGGGCCGAGGGGGAGTGCGCACATGATGCACGATAGGTGCTAGTACTTGG
*
12620328 CCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
196 CCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
12620393 AGCTTTTACAGGTTTGCTCCCAGTAGCTATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATG
261 AGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
12620458 GTCATAAAATCTTGTACACTTCGAGTTTTTAGCGGAATTTTTTTATGCATGCCAACAAAAATGCA
326 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGAATTTTTTTATGCATGCCAACAAAAATACA
* ** * *
12620523 TGGATCATGTCTACCTGGTTAGGGGAAAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACC
391 AGGATCACATCTACCTGGTTAGGGCAAAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC
* ** * * *
12620588 GTAAAAAGTTTTTAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAA
456 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAA
* * *
12620653 GGCTTAAGGGACCATTGTATGAATTTAGAAGCTATAAAAATGGAATTGGCATGCAGAAATATGAA
521 GGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAA
* * *
12620718 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAACCCGTATCTCTGGCCGA
586 GATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCAACCCGTATCTCTGGACGA
*
12620783 CGTAGTGCCCGCCCGCCCGCTCGCCCGTTCGTTTTGTCATTTGACTTAGGCATACGG
651 CATAGTGCCCGCCCGCCCGCTCGCCCGTTCGTTTTGTCATTTGACTTAGGCATACGG
* * ** *
12620840 AGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGTTGCAGCAGATGCTGGGCCCAAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTGGGCCCAAGCA
** * *
12620905 TGTGCAGGTGCCGTATTTTTCTTCACCGGGGCACCATC-ACAGGAGAACCTGACCGGC-GACATT
66 TGTGCAGGTGCCACATTTTTCTTCACCAGGGCACCATCGAC-GGAGAACCTGACCAGCAG-CATT
* * * *
12620968 GGGGTTTCGATGATCGGGGGGGCCG-GGGGGTA-TGCGCACATGATGCATGATGGGTGCTAGTAC
129 GGGGTTCCGACGATC-GGGGGGCCGAGGGGG-AGTGCGCACATGATGCACGATAGGTGCTAGTAC
* *
12621031 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCA
192 TTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
12621096 TTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
257 TTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
12621161 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TAATTTTTTTCATGCATGCCAACAAAA
322 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGAATTTTTTT-ATGCATGCCAACAAAA
* * * * *
12621225 ATACAAGGATCACATCTATC-GAGTTTGGAGCCAAAAA-TCCTTTCGAAAAAATTTTAAAAAATC
386 ATACAAGGATCACATCTACCTG-GTTAGG-GCAAAAAACTCCTTCCAAAAAAATTTTAAAAAATC
*
12621288 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGCAACTTC
449 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTC
* * * *
12621353 ACGTGAAGGCTTAAGCTACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGTAGAA
514 ACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAA
* *
12621418 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCCACCCGTCTCTC
579 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCAACCCGTATCTC
*
12621483 TGGACGGCATAGTGCCC
644 TGGACGACATAGTGCCC
12621500 ACCCACTCGT
Statistics
Matches: 584, Mismatches: 69, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
706 12 0.02
707 557 0.95
708 15 0.03
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (707 bp):
AGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTGGGCCCAAGCA
TGTGCAGGTGCCACATTTTTCTTCACCAGGGCACCATCGACGGAGAACCTGACCAGCAGCATTGG
GGTTCCGACGATCGGGGGGCCGAGGGGGAGTGCGCACATGATGCACGATAGGTGCTAGTACTTGG
CCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGAATTTTTTTATGCATGCCAACAAAAATACA
AGGATCACATCTACCTGGTTAGGGCAAAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC
GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAA
GGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCAACCCGTATCTCTGGACGA
CATAGTGCCCGCCCGCCCGCTCGCCCGTTCGTTTTGTCATTTGACTTAGGCATACGG
Found at i:12621716 original size:26 final size:26
Alignment explanation
Indices: 12621686--12621738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12621676 GTTGACTTAG
*
12621686 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGCCTAA
*
12621712 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATAAGGAGTTCATTCCCAGCCTAA
12621738 G
1 G
12621739 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGCCTAA
Found at i:12622620 original size:26 final size:26
Alignment explanation
Indices: 12622586--12622636 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12622576 TTGACTAAGG
12622586 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
12622612 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
12622637 GATCAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:12622826 original size:900 final size:903
Alignment explanation
Indices: 12620832--12626018 Score: 6735
Period size: 901 Copynumber: 5.8 Consensus size: 903
12620822 TTTGACTTAG
** ** * *
12620832 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGTTGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCACATGCTGGG
* ** *
12620897 CCCAAGCATGTGCAGGTGCCGTATTTTTCTTCACC-GGGGCA-C--CATC--A-CA-----GGAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGGCACCATCATCGGAGCATCGCCGGAG
* * * * **
12620950 AACCTGACCGGCGACATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTATGCGCACATGATGCA
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * **
12621015 TGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12621080 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12621145 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTC
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
* * * * * *
12621209 ATGCATGCCAACAAAAATACAAGGATCACATCTATCGAGTTTGGAGCCAAAAATCCTTTCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAA
12621274 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
12621339 TGCCACGCAACTTCACGTGAAGGCTTAAGCTACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
12621404 ATTGGCGTGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
12621469 GCCA-CCCGTCTCTCTGGACG--GCA-T---AG--TG--C-CC-ACCCACTCGTTTCGTCTGTTG
650 G-CATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
*
12621521 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGATCGGACTGAGGGTTGCGGTAGCAGG
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-G-CCGGACTGAGGGTTGCGGTAGCAGG
** * * *
12621585 ATCGGCAGCACATAGAGAGGGACCCAACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
777 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
12621650 TGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12621712 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCAAGGG-T-TACGCAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTA-GCAGCACATGCTGG
* * * *
12621775 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-GCTGGGGCACCATCACCGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGGCACCATCATCGGAGCATCGCCGGA
* * * *
12621839 GAACCTGACCGGTGGCATTGGGGTTCTGACGATCAGGGGGGCCGGGAGGTGTGCGCACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
12621904 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12621969 GACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCAATTAAAGTGTCT-AGA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-A
* * * *
12622033 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTAGAGTTTTTAGCTAAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12622098 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GACTAAACTCCTTCCGAAA
389 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAA
* * ** * * *
12622162 AAATTTTAAAAAATCCCTAACCGTAAAAA-TTTTGAACATCATGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12622226 TCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12622291 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
12622356 CGCATCCCGTCTCTCTGGCCGATGCAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
* ** * *
12622421 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGCGCAGACCAAGGGTTACGGTAGTAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGC-CGGACTGAGGGTTGCGGTAGCAGGA
* * * * *
12622486 TCGACAGCACGCAGATGGGGACCCGACCGATCCCCAGTTTGCGCATCTCGCCCC-CTGGCCGGTT
778 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
12622550 GAGCGCCTGCACGCTCATTTTGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
12622611 CCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTAGCAGCACATTCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCACATGCTGGG
** * * ** *
12622676 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGCCACCATCGCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGGCACCATCATCGGAGCATCGCCGGAG
12622740 AACCTGACCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
12622804 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12622869 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12622934 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAAGTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12622999 ATGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCC-AAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAA
* * * *
12623063 AAATTT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
12623127 TGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
12623191 ATTGGCATGCATAAATATGAAGATGTACCTAAACTCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** *
12623256 GCATCTCGTCTCTCTGGCCGACGTCA-AGCCTGCCCGCCCGCCTGGGCGCTCGTTTCATCGGTTG
650 GCATCCCGTCTCTCTGGCCGACG-CAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
* * * ** * * *
12623320 GCTTAGGCAAACAGAGTTCATTCCCAGTCTTAGATTGGACCGGATTGAGGGTTGCGGCAGTAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCGGACTGAGGGTTGCGGTAGCAGGA
* * * * *
12623385 TCGACAGCACGTAGAGGGGGACCC-AGCCAATCCCCAGCTTGCGTATCCCACCCCTCTGGCCGGC
778 TCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
12623449 T--------G-A---T--TTT-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
842 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12623496 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAAATCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCACATGCTGGG
* * * *
12623561 CT-GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCA-GGGCACCATCATCAGAGCATCACCGAAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGGCACCATCATCGGAGCATCGCCGGAG
* * * * * * *
12623624 AACCTGACCGGTGGCATTGAGGTTCTGGCGATCGGGCGGGCCGGGGGTTGTACGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
12623689 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12623754 ACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12623819 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAAGTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * *
12623884 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC------
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAA
* *
12623943 A----AAAAAAT----------------TTTAAAAAATCGTGAAAAATAGAAAAAGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12623988 GCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12624053 TTGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGACTTGTG
586 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * *
12624118 CATTCCATCTCTTTGGTCAACGTAGTGCTCGCCCGCCCGCCCT-CCCGCTCATTTCGTCGGTTAG
651 CATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCG-CCTGCCCGCTCGTTTCGTCGGTTGG
* * * ** * * *
12624182 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGATTGCAGCAGCAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCGGACTGAGGGTTGCGGTAGCAGGAT
* ** * * * * *
12624247 CGGTAGCACGCAGAGGGGGACCTTACCTATCCCCAGCTTAC-TATCCCGCCCCTCTGGACTGCTG
779 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * * * *
12624311 AGCGCCCGCACGCTTGTTTCGTGGGTTCACTTAGGTATACGGAGTTTATTCCTAGTCTAA
844 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
12624371 GCATTCTGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCACATGCTGGG
* * * *
12624436 -TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGA-C-GGGGAACCATCGTCGGAGCATCGCCGGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-ACCAGGGGCACCATCATCGGAGCATCGCCGGA
* ** * * *
12624498 GAACCTGACCGGCGGCATTGGGGTTCTGGTGATCAGGCGGCCCGGGGGGTGTGCGCACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
12624563 GCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12624628 GACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12624693 TAGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
12624758 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTTCAAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAA
** * *
12624823 AATTTTAAAAAATCTGGAACCGCAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCGTTT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
12624888 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12624953 ATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
12625018 GCACCCCGTCTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGTTTGTCTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
12625083 CTTAGGTATACGGAGTTCATTCTCAGTCTAAGATTGAACCGGACTGAGGGTTGTGGTAGCAAGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGCCGGACTGAGGGTTGCGGTAGCAGGAT
* ** * **
12625148 CGGCAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGCTG
779 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
12625213 AGCGCCCGCAAGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
12625273 GCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACCGAGGGTTCCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCACATGCTGGG
* * * ** *
12625338 CTCAGGTATGTGCTGGTGCCATATTTTTCTTCGTCA-AGGCACCATCATCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGGCACCATCATCGGAGCATCGCCGGAG
* *
12625402 AACCTGACCGGCGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
12625467 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12625532 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAA
* *
12625596 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTG-ATTTCTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
12625660 GTGCATG-CAAAAAAAATACAAGGATCATGTCTACCATGTTTGGCGCAAAAACTCCTTCTGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAA
* **
12625724 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
12625789 TGCCATGAAACTTCACATGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAAAAATGAA
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12625854 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
12625919 GCATCCCGTTTCTCTGGCCGACGTAATGCCCGCCCGCCCCCCCGTCCACTCGTTTTGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGG
*
12625984 CTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATC
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
12626019 GGACCAGACC
Statistics
Matches: 3775, Mismatches: 433, Indels: 178
0.86 0.10 0.04
Matches are distributed among these distances:
860 106 0.03
861 195 0.05
862 4 0.00
868 1 0.00
869 1 0.00
872 1 0.00
874 4 0.00
875 437 0.12
876 6 0.00
878 2 0.00
879 50 0.01
880 42 0.01
881 1 0.00
882 3 0.00
884 350 0.09
885 102 0.03
886 3 0.00
887 2 0.00
888 171 0.05
889 43 0.01
890 275 0.07
891 11 0.00
892 1 0.00
894 1 0.00
896 1 0.00
898 2 0.00
899 345 0.09
900 576 0.15
901 609 0.16
902 204 0.05
903 226 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGGCACCATCATCGGAGCATCGCCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGCCGGACTGAGGGTTGCGGTAGCAGGATCG
GCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12625283 original size:26 final size:26
Alignment explanation
Indices: 12625247--12625299 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12625237 GTTAACTTAG
12625247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12625273 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12625299 G
1 G
12625300 ATCATACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12626698 original size:717 final size:716
Alignment explanation
Indices: 12625273--12626739 Score: 2269
Period size: 717 Copynumber: 2.0 Consensus size: 716
12625263 CCCAGTCTAA
** *
12625273 GCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACCGAGGGTTCCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTAGG
* * * * *
12625338 CTCAGGTATGTGCTGGTGCCATATTTTTCTTCGTCAAGGCACCATCATCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGATGGTGCCATAATTTTCTTCGTCAAGGCACCATCACCGGAGCATCGCCAGAGA
*
12625403 ACCTGACCGGCGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGTGC
131 ACCTGACCGGCGGAATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCAAATGATGTGC
* **
12625468 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
12625533 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAATG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAATAGCCACTAAAGTGTCTGAAAATG
* *
12625598 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGATTTCTTTGTG
326 GGGACACTTTTTCCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGATTTCTTTGTG
* * * **
12625663 CATGCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGCGCAAAAACTCCTTCTGAAAAAATT
391 CATGCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCAAAAACACCTTCCAAAAAAATT
*
12625728 TTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
*
12625793 ATGAAACTTCACATGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTG
521 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTG
* * *
12625858 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGCGCAT
586 GCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
* * * * *
12625923 CCCGTTTCTCTGGCCGACGTAATGCCCGCCCGCCCCCCCGTCCACTCGTTTTGTCGGTTGGCTTA
651 CCCGTCTCTCTAGCCGACGTAATGCCCGCCCGCCCACCCGTCAACTCGTTTCGTCGGTTGGCTTA
12625988 G
716 G
* * *
12625989 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGACCAGACCGAGTGTTACGGCAGCACATGC-AGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTA-G
* * ** **
12626053 GCTCGGGCATGTGATGGTGCCGTAATTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCAGAG
65 GCTCAGGCATGTGATGGTGCCATAATTTTCTTCGTCAAGGCACCATCACCGGAGCATCGCCAGAG
* * *
12626118 AACCTGACCGGCGGCATTGGGGTTCCGACGAT-AGGGGGGCCGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGGCGGAATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCAAATGATGTG
* *
12626182 TGATGGGTGCTGGTACTTGGCCTTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCAC
*
12626247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCACTAAAGTGTCTG-AAA
260 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAATAGCCACTAAAGTGTCTGAAAA
* * *
12626311 TGGGGACACTTTTTCCAAAAGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTCCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTG-ATTTCTTT
* * * *
12626376 GTGCATGCCAAGAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAA
388 GTGCATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCAAAAACACCTTCCAAAAA
** *
12626441 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
*
12626506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAA
517 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAA
* *
12626571 ATTGGCACATAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
582 ATTGGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12626636 ACATCCGGTCTCTCTAGCCGGCGTAGTGCCC-CTCCGCCCACCCG-CAAGCTTGTTTCGTCGGTT
647 ACATCCCGTCTCTCTAGCCGACGTAATGCCCGC-CCGCCCACCCGTCAA-CTCGTTTCGTCGGTT
12626699 GGCTTAG
710 GGCTTAG
*
12626706 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
12626740 TGGACTGAAA
Statistics
Matches: 680, Mismatches: 65, Indels: 11
0.90 0.09 0.01
Matches are distributed among these distances:
715 146 0.21
716 214 0.31
717 320 0.47
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTAGG
CTCAGGCATGTGATGGTGCCATAATTTTCTTCGTCAAGGCACCATCACCGGAGCATCGCCAGAGA
ACCTGACCGGCGGAATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCAAATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAATAGCCACTAAAGTGTCTGAAAATG
GGGACACTTTTTCCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGATTTCTTTGTG
CATGCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCAAAAACACCTTCCAAAAAAATT
TTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTG
GCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
CCCGTCTCTCTAGCCGACGTAATGCCCGCCCGCCCACCCGTCAACTCGTTTCGTCGGTTGGCTTA
G
Found at i:12626844 original size:26 final size:26
Alignment explanation
Indices: 12626795--12626844 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12626785 ACCCAACTGA
* *
12626795 TACGGAGTTCATTCCCAGTTTAAGCG
1 TACGGAGTTCATTCCCAATCTAAGCG
12626821 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
12626845 ACCGGATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCG
Found at i:12627590 original size:829 final size:829
Alignment explanation
Indices: 12625992--12627616 Score: 2316
Period size: 829 Copynumber: 2.0 Consensus size: 829
12625982 GGCTTAGGCA
* * *
12625992 TACGGAGTTCAGTCCCAGTCTAAGATCGGACCAGACCGAGTGTTACGGCAGCACATGCAGGGCTC
1 TACGGAGTTCAGTCCCAATCTAAGACCGGACCAGACCGAGGGTTACGGCAGCACATGCAGGGCTC
** ** * *
12626057 GGGCATGTGATGGTGCCGTAATTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCAGAGAACC
66 GGGCATGTGATGGTGCCACAATTTTCTTCGTCGGGGCACCATCACCGGAGCAACACCAGAGAACC
* * * *
12626122 TGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGTGTGTGCACATGATGTGTGATG
131 TGACCGGCGACATTGGGGTTCCGACGATAGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
12626187 GGTGCTGGTACTTGGCCTTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* *
12626252 CTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGA
261 CTTAAAGAGCATTTGAGATTTTACAGCTTCGCTACCAGTAGCCACTAAAGTGTCTGAAATGGGGA
* *
12626317 CACTTTTTCCAAAAGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
326 CACTTTTTCCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCAT
* * *
12626382 GCCAAGAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTT
391 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACACCTTCCAAAAAAATTTT
** * * **
12626447 AAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
456 AAAAAATCCCGAACCACAAAAAGGTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
12626512 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGC
521 GAAACTTCACGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGCCATAAAAATGAAATTGGC
* * **
12626577 ACATAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCC
586 ACACAGAAATAAGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCC
*
12626642 GGTCTCTCTAGCCGGCGTAGTGCCCCTCCGCCCACCCGCAAGCTTGTTTCGTCGGTTGGCTTAGG
651 GGTCTCTCTAGCCGGCGTAGTGCCCCTCCGCCCACCCGCAAGCTGGTTTCGTCGGTTGGCTTAGG
* **
12626707 CATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAAAGTTTTGGTAGTAGGATC-GACA
716 CATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAAAGTTGCGGTAGTAGGATCAG-CA
*
12626771 GCACGCA-AAGGAGGACCCAACTGATACGGAGTTCATTCCCAGTTTAAGCG
780 GCACACAGAAGG-GGACCCAACTGATACGGAGTTCATTCCCAGTTTAAGCG
* ** * *
12626821 TACGGAGTTCATTCCCAATCTAAGACCGGATTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCAGTCCCAATCTAAGACCGGACCAGACCGAGGGTTACGGCAGCACATGCAGGGCTC
* * * *
12626886 GGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCAACACCGGAGAACC
66 GGGCATGTGATGGTGCCACAATTTTCTTCGTCGGGGCACCATCACCGGAGCAACACCAGAGAACC
* *
12626951 TGACCGGTGACATTGGGGTTCCGACGATCGAAGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
131 TGACCGGCGACATTGGGGTTCCGACGATAG-AGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
12627016 GGGTGTTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* * *
12627080 CCTTAAAGTGCATTTGAGATTTTACAGCTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGCTTCGCTACCAGTAGCCACTAAAGTGTCTGAAATGGGG
* * *
12627145 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AGTTTTTTGTGGA
325 ACACTTTTTCCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCA
* * ** *
12627209 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGATGCCAAAA-ATCCTTCTGAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACA-CCTTCCAAAAAAATT
* * *
12627273 TTAAAAAATCCCGAACCACAAAAAGGTTCAAAAATCATTGAAAAATAGAAAATGAGTCGTCTTGC
454 TTAAAAAATCCCGAACCACAAAAAGGTTCAAAAATC-GTGAAAAATAGAAAACGAGTCATCTTGC
* **
12627338 CATGAAACTTCACGTGAAGGCTTAAGAGACAATTTTATGAATTTACAAGCCATAAAAATGGCATA
518 CATGAAACTTCACGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGCCATAAAAATGAAAT-
** * * * *
12627403 T-GCATGCAGAAATATGAAGATGTACCTAAACCCAGCTACCATCCTATCGATCCACAGCTTGCGC
582 TGGCACACAGAAATAAGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCAC
* * * * * **
12627467 GTCTC-GTCTCTTTGGCCGGCGTAGTGCCCGC-CCGCCCGCCTGCCCGCTGGTTTCGTCGGTTGG
647 ATC-CGGTCTCTCTAGCCGGCGTAGTGCCC-CTCCGCCCACCCGCAAGCTGGTTTCGTCGGTTGG
* **
12627530 CTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA-TCAGA-TGGAGGGTTGCGGTAGTAGG
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACT-AGACT-GAAAGTTGCGGTAGTAGG
12627593 ATCAGCAGCACACAGAAGGGGACC
773 ATCAGCAGCACACAGAAGGGGACC
12627617 TGACCGATCC
Statistics
Matches: 700, Mismatches: 86, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
827 1 0.00
828 97 0.14
829 506 0.72
830 96 0.14
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.25
Consensus pattern (829 bp):
TACGGAGTTCAGTCCCAATCTAAGACCGGACCAGACCGAGGGTTACGGCAGCACATGCAGGGCTC
GGGCATGTGATGGTGCCACAATTTTCTTCGTCGGGGCACCATCACCGGAGCAACACCAGAGAACC
TGACCGGCGACATTGGGGTTCCGACGATAGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGCTTCGCTACCAGTAGCCACTAAAGTGTCTGAAATGGGGA
CACTTTTTCCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACACCTTCCAAAAAAATTTT
AAAAAATCCCGAACCACAAAAAGGTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGCCATAAAAATGAAATTGGC
ACACAGAAATAAGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCC
GGTCTCTCTAGCCGGCGTAGTGCCCCTCCGCCCACCCGCAAGCTGGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAAAGTTGCGGTAGTAGGATCAGCAG
CACACAGAAGGGGACCCAACTGATACGGAGTTCATTCCCAGTTTAAGCG
Found at i:12627730 original size:26 final size:26
Alignment explanation
Indices: 12627694--12627743 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
12627684 CTTGACTTAG
12627694 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
12627720 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
12627744 ATGATAGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:12628642 original size:26 final size:26
Alignment explanation
Indices: 12628606--12628656 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12628596 TGACTTAGGC
*
12628606 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
12628632 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
12628657 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:12629070 original size:906 final size:901
Alignment explanation
Indices: 12626794--12629911 Score: 4008
Period size: 906 Copynumber: 3.4 Consensus size: 901
12626784 GACCCAACTG
* * * * * *
12626794 ATACGGAGTTCATTCCCAGTTTAAGCGTACGGAGTTCATTCCCAATCTAAGACCGGATTAGACCG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCG
* * * *
12626859 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCA
66 AGGGTTGCGACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * ** **
12626924 CCATCACCGGAGCAACACCGGAGAACCTGACCGGTGACATTGGGGTTCCGACGATCGAAGGGG-C
131 CCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGTC
* * *
12626988 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTTGCCCTTATATTGGCCCCCTATC
196 GGGGGGGTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
12627053 CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGTGCATTTGAGATTTTACAGCTTTGCTACC
260 CCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
12627117 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
325 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
12627182 CGAGTTTTTAGCTG-AGTTTTTTGTGGATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
390 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** * * * ** * * *
12627246 GATGCCAAAAATCCTTCTGAAAAATTTTTAAAAAATCCCGAACCACAAAAAGGTTCAAAAATCAT
455 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATC-G
* * * *
12627311 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACAATTTTAT
519 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
12627376 GAATTTACAAGCCATAAAAATGGCATAT-GCATGCAGAAATATGAAGATGTACCTAAACCCAGCT
584 GAATTTACAAGCCATAAAAATGGCAT-TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCT
* * * *
12627440 ACCATCCTATCGATCCACAGCTTGCGCGTCTCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCG
648 ACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
12627505 CCTGCCCGCTG-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGAT
713 CCCGCCCGCTGTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTAGAC
** * * * *
12627569 CAGATGGAGGGTTGCGGTAGTAGGA-TCAGCAGCACACAGAAGGGGACCTGACCGATCCCTGGCT
778 CAGACCGAGGGTTGCGGTAGCAGGATTGA-CAGCACGCAGAAGGGGACCCGACCGATCCCTGGCT
* *
12627633 TGCGCATCTCGCCCCTCTGGCCTGCTGAGCGTCCGCACGCTCGTTTCGTGGCTTGACTTAGGC
842 TGCGCATCT--CCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
12627696 ATACGGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTATGAT-AGGATTGGACC
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCA-GACTGGACC
* * * * *
12627760 AAGGGTTGCTGTC-GCACATACTGGGCTAGAGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGG
65 GAGGGTTGC-GACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * *
12627823 GCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGT
128 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGG
* * *
12627888 TTCGCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCC
193 GTCG-GGGGGGTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
****
12627953 TATCCCTCATCAAAATTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
256 TATCCCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12628018 TGTCAGTAGCCATTAAAG-GCATCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGT
321 TGCCAGTAGCCATTAAAGTG--TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
12628082 ACAGTTCGAGTTTTTAGCTGAATTTTTCTATGCATGCTAGA-AAAAATACAAGGATCACGTCAAC
384 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTAC
* **
12628146 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAGCCGCAAAAAGTTTTGA
448 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAA
*
12628211 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCA
513 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
12628276 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTCCCTAAACC
578 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACC
* * *
12628341 CACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGCCGGCGTTGTGCTCGCCC
643 CACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
*
12628406 GCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTAATTCCCAGTCTAA
708 GCCCGCCCGCCCG-CTG-T-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAA
* * ** *
12628471 GATCAGACCAGACCGACGGTTGTAGTAGCA-GACTTGACAGCACGCAGAGGGGGACCCGACCGAT
770 GATTAGACCAGACCGAGGGTTGCGGTAGCAGGA-TTGACAGCACGCAGAAGGGGACCCGACCGAT
* * *
12628535 CCCCGACTTGCTCATCTCACCGCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
834 CCCTGGCTTGCGCATCTC-CC-CTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
12628600 TTAGGC
896 TTAGGC
* *
12628606 ATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCG
* * *
12628671 AGGGTTGC-AGCAGCACATACTGGGCTGGGGCGTGTGCTGGTGCCGTATTTTTCTTCGTCGGGGC
66 AGGGTTGCGA-CAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
** * * *
12628735 ACCATCGTTGGAGCATCGCTGGAGAACCTAATCGACGACATTGGGGTTCCGACGATCGGGGGGGT
130 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGT
* * *
12628800 CGGGGGGGTGT-ACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATC
195 CGGGGGGGTGTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
12628864 CCTCATCAAACCACAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
260 CCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
12628929 AATAGCCATTAAAGTGTCTGAAATGGGGACAATTTATTCAAATGGTCATAAAATCTTGTACACTT
325 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
12628994 TGATTTTTTAGCTGAATTTTTTTGTGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTT
390 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
12629059 GGGGCCAAAACTCCTT-CGAAAAAAATTTTAAAAAAT-TCTGAACCGTAAAAAGTTTCCAAAATC
455 GGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCT-TGAACCGCAAAAAGTTTCAAAAATC
** *
12629122 GTGAAAAACGGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
518 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
12629187 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCT
583 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCT
* * * * * * *
12629252 ACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGACATAATGCCCGCCCGCCCT
648 ACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
12629317 CCCACCCG-T-TAATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA
713 CCCGCCCGCTGT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTAGA
* * * ** *
12629380 CCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAAGGGGACCCGGTCGATTCCTGGCT
777 CCAGACCGAGGGTTGCGGTAGCAGGATTGACAGCACGCAGAAGGGGACCCGACCGATCCCTGGCT
* * * * *
12629445 TACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGTTTGTTTTGTGGGTTGACTTAGGC
842 TGCGCAT-CT-CCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
12629508 ATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCAT
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CC---C-AATC-TA---AG-----
* *
12629573 TCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTG
52 ----A-TC--AGA-C----TGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATGTGCTG
* * * * * * * *** * * *
12629638 GTGCTGTATTTTCCATCATCGAGGCACTATCGCCGGAGCATCATAGGAGAACCTGATCGGCGGCA
105 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACA
* * *
12629703 TTGTGGTTTCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
170 TTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGT-CGCACATGATGTGCGATGGGTGCTGGTA
* * *
12629767 CTTGGCCCTTATATT-GCCCCCTATCCCTCATTAAACCACGAGAACTCACACCCCTTTAACGAGC
234 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGC
12629831 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
299 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
12629896 AAATGGTCACAAAATC
364 AAATGGTCACAAAATC
12629912 GTGAAAAATA
Statistics
Matches: 1929, Mismatches: 226, Indels: 96
0.86 0.10 0.04
Matches are distributed among these distances:
902 345 0.18
903 12 0.01
904 85 0.04
905 53 0.03
906 586 0.30
907 217 0.11
908 5 0.00
909 15 0.01
910 314 0.16
911 6 0.00
920 1 0.00
921 2 0.00
923 3 0.00
924 1 0.00
927 11 0.01
928 233 0.12
929 40 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCG
AGGGTTGCGACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGTC
GGGGGGGTGTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
GCCCGCTGTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTAGACCAG
ACCGAGGGTTGCGGTAGCAGGATTGACAGCACGCAGAAGGGGACCCGACCGATCCCTGGCTTGCG
CATCTCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
Found at i:12629538 original size:26 final size:26
Alignment explanation
Indices: 12629509--12629584 Score: 152
Period size: 26 Copynumber: 2.9 Consensus size: 26
12629499 GACTTAGGCA
12629509 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
12629535 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
12629561 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12629585 ATCGGATTGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:12630328 original size:26 final size:26
Alignment explanation
Indices: 12630292--12630344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12630282 CTTGACTTAG
*
12630292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
12630318 GCATACGGAGTTCAATCCCGGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12630344 G
1 G
12630345 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:12630544 original size:94 final size:93
Alignment explanation
Indices: 12630384--12630575 Score: 240
Period size: 94 Copynumber: 2.1 Consensus size: 93
12630374 CATGCTGGGC
* * * *
12630384 TCGGGAATGTGCTGGTGCCATATTTTCTTCATCGACGCATCATCGTCGGAGCATCGCCGAAGAAC
1 TCGGGAATGTGCTGGTGCCACATTTTCTTCACCGACGCACCATCGTCGGAGCATCGCAGAAGAAC
12630449 CTCACCGACGGCATTGGGGTTTCGACGA
66 CTCACCGACGGCATTGGGGTTTCGACGA
* * * * *
12630477 TCGGGCATGTGCTGGTTCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTAGGAGAA
1 TCGGGAATGTGCTGGTGCCACA-TTTTCTTCACCGACGCACCATCGTCGGAGCATCGCAGAAGAA
* * * * **
12630542 CCTGACTGGCGGCATTGTGGTTTCGGTGA
65 CCTCACCGACGGCATTGGGGTTTCGACGA
12630571 TCGGG
1 TCGGG
12630576 GGGACGGGGG
Statistics
Matches: 83, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
93 19 0.23
94 64 0.77
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (93 bp):
TCGGGAATGTGCTGGTGCCACATTTTCTTCACCGACGCACCATCGTCGGAGCATCGCAGAAGAAC
CTCACCGACGGCATTGGGGTTTCGACGA
Found at i:12631106 original size:12 final size:12
Alignment explanation
Indices: 12631089--12631124 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
12631079 GACATAGTGA
12631089 CCGCCCGCTCGT
1 CCGCCCGCTCGT
12631101 CCGCCCGCTCGT
1 CCGCCCGCTCGT
*
12631113 CCGCTCGCTCGT
1 CCGCCCGCTCGT
12631125 TTCGTCGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.56, G:0.25, T:0.19
Consensus pattern (12 bp):
CCGCCCGCTCGT
Found at i:12631341 original size:26 final size:26
Alignment explanation
Indices: 12631302--12631354 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12631292 GTTAACTTAG
* * *
12631302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCACAGTCTAA
*
12631328 GCATACGAAATTCATTCATAGTCTAA
1 GCATACGAAATTCATTCACAGTCTAA
12631354 G
1 G
12631355 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCACAGTCTAA
Found at i:12635389 original size:705 final size:702
Alignment explanation
Indices: 12634276--12636482 Score: 2924
Period size: 705 Copynumber: 3.1 Consensus size: 702
12634266 ACGGGATGCA
* * * *
12634276 CGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
*
12634341 AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCCAGGGCA
66 AGGGTTACGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCC-CATTTTTCTTTGCCAGGGCA
* *
12634406 CCATCACCGGAGCATCACCGGAGAACCGGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-
130 CCAT---C--TG--TCA---GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG
* *
12634470 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCACCTATCC
185 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
12634535 CTCATCAAACCTTGAGAAATCACACCCCCTTAAAAAGCATTTGAGATTTTTCAGGTTTGCTGCCA
250 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
12634600 GTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACGCTTC
315 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
12634664 GAGTTTTTAGGTGAATTTTTTTATGCATGCAACCAAAAATACAAGGATCACGTCTACCAAGTTTT
380 GAGTTTTTAGCTGAATTTTTTTGTGCATGCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
12634729 TGGCCAAAATGCTTTCTGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTGGAAAATCGTG
444 GGGCCAAAAT-C-TTCTGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCGAAAATCGTG
* *
12634794 AAAATTAGAAAA-GAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGA
507 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* **
12634858 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACGAACC
572 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
12634923 ACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCAGCGTAGTGCCCGCCAGCCCGTCC
637 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCC-GCCCG-CC
12634988 -GCC
699 AGCC
* * * *
12634991 CGTTCGCTTCATCGGTTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATC-GTACTGGACC
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACC
* *** *
12635055 GAGGGTTACGACAGCACATTCTGCGCTCGGGCATGTGCTGGTGCCCATTTTTCTTCATCGGGGCA
65 GAGGGTTACGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCCATTTTTCTTTGCCAGGGCA
* *
12635120 CCAT-TGTCAGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGT
130 CCATCTGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGT
* * *
12635184 GCACACATGATATGCGATGGGTGTTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAA
194 GCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
12635249 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
259 CCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
12635314 AAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTA
324 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
12635379 GCTG-ATTTTTTTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
389 GCTGAATTTTTTTGTGCA-TGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * ** *
12635443 -CTTCTTCAAAAAAGTTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATTATGAAAAGTAGA
453 TCTTC-TGAAAAAA-TTTTAAAAAATCTCGAACTGTAAAAAGTTTCGAAAATCGTGAAAAATAGA
* * *
12635507 AAATGAGTC-T-TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTATCTGAATTTACAAG
516 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
12635570 CCATAAAAATGGCTTTGGCAGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
581 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * * * *
12635635 ATCCACGGC-TGACGTTTCCCGTCTTTCTGGCTG-GTATAGTGCCCGCCCGCCCCGCCCGGTC
646 ATCCACGGCTTG-CGCATCCCGTCTCTCTGGCCGCG--TAGTGCCCG-CCG-CCCG-CCAGCC
* * * * * * * * *
12635696 TGCTCATTTCGTTGGATGGCTGAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC-GGCCCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
* * *
12635760 AGGGTTGCGGCAGCACATGCTAGC-CTCGGGCATGTGCTGGTGTCTCATTTTTCTTTGCCAGGGC
66 AGGGTTACGACAGCACATGCT-GCGCTCGGGCATGTGCTGGTG-CCCATTTTTCTTTGCCAGGGC
*
12635824 ACCATCGCCGGAGCATCGTC-GAAGAACCTGACCGACGGCATTGGGTTTCCGACGATCGGGGGGC
129 ACCAT--------C-T-GTCAG-AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
* *
12635888 CGAGGGGTGTGTG--CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
183 CG-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** * *
12635951 TCTGTCATCAAGCCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGCTTGCTG
247 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
* * *
12636016 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTGTTCAAATGATCACAAAATCTTGTACAC
312 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
12636081 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
377 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
12636146 TTGGGGCCAAAAATCCATT-TGAAAAAATCTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAA
441 TTGGGGCC-AAAAT-C-TTCTGAAAAAATTTTAAAAAATCTC-GAACTGTAAAAAGTTTCGAAAA
*
12636209 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTG
502 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
12636274 TATGAATTTACAAGACATAAAAATAGCATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCAC
567 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * **
12636339 CTACCACCCTCTCGATCCACGGCTTGCACATCCGGTCTCTCTGGCCGACGTAGTGCCTACTCGCC
632 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGC-CGCC
12636404 CGCCAGCC
695 CGCCAGCC
* * * *
12636412 CACTCGTTTCATCGGTTGGATTAGGCATACGGAGTTCATTCACAGTCTAACATCAGA-TCGGACC
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACC
12636476 GAGGGTT
65 GAGGGTT
12636483 CCAGTAGTAG
Statistics
Matches: 1305, Mismatches: 142, Indels: 88
0.85 0.09 0.06
Matches are distributed among these distances:
701 1 0.00
702 6 0.00
703 183 0.14
704 106 0.08
705 276 0.21
706 51 0.04
708 1 0.00
714 203 0.16
715 161 0.12
716 147 0.11
717 24 0.02
718 141 0.11
719 4 0.00
720 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (702 bp):
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
AGGGTTACGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCCATTTTTCTTTGCCAGGGCAC
CATCTGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGC
ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCT
TCTGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCGCCCGCCAGCC
Found at i:12637166 original size:889 final size:887
Alignment explanation
Indices: 12635762--12637367 Score: 2440
Period size: 889 Copynumber: 1.8 Consensus size: 887
12635752 ACGGCCCGAG
* * **
12635762 GGTTGCGGCAGCACATGCTAGCCTCGGGCATGTGCTGGTGTCTCATTTTTCTTTGCCAGGGCACC
1 GGTTGCAGCAGCACATGATAGCCTCGGGCATGTGCTGGTGTCTCATTTTTCTTCACCAGGGCACC
* * * * *
12635827 ATCGCCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGTTTCCGACGATCGGGGGGCCGAG
66 ATCGCCGGAGCATCGCCGAAGAACCTAACCGACAGCATTGGGGTTCCGACGATCGGAGGG-CGAG
** * * * **
12635892 GGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTGTC
130 GGGTGTGCACACAAGATGTGCAATGGCTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTC
* * *
12635957 ATCAAGCCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTA
195 ATCAAACCTCGAGAACTCACACCCCCTCAAAAAGCATTTGAGATTTTACAGGCTTCCTGCCAGTA
12636022 GCCATTAAAGTGTCTAAAATGGGGACACTTTGTTCAAATGATCACAAAATCTTGTACACTTCGAG
260 GCCATTAAAGTGTCTAAAATGGGGACACTTTGTTCAAATGATCACAAAATCTTGTACACTTCGAG
12636087 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
325 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
** *
12636152 CCAAAAATCCATTTGAAAAAATCTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAA
390 CCAAAAATCCATTCAAAAAAATCTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
12636217 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATT
455 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
12636282 TACAAGACATAAAAATAGCATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACC
520 TACAAGACATAAAAATAGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACC
* *
12636347 CTCTCGATCCACGGCTTGCACATCCGGTCTCTCTGGCCGACGTAGTGCCTACTCGCCCGCCAGCC
585 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTG-C--C-CGCCCGCCAGCC
*
12636412 CACTCGTTTCATCGGTTGGATTAGGCATACGGAGTTCATTCACAGTCTAACATCAG-A-TCGGAC
646 CACTCGTTTCATCAGTTGGATTAGGCATACGGAGTTCATTCACAGTCTAACATC-GTACT-GGAC
12636475 CGAGGGTTCCAGTAGTAGGCTCAACAGTACGCAGAGGGGGACCCGACCAATCCCCTGCTTGCGCA
709 CGAGGGTTCCAGTAGTAGGCTCAACAGTACGCAGAGGGGGACCCGACCAATCCCCTGCTTGCGCA
12636540 TCCAGCCCCTCTGGCCGATTGAGCGACTGCACGCTTTTTTCGTGGGTTGACTTAGGCATACGGGT
774 TCCAGCCCCTCTGGCCGATTGAGCGACTGCACGCTTTTTTCGTGGGTTGACTTAGGCATACGGGT
12636605 TTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTATGATCGGA
839 TTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTATGATCGGA
* * * *
12636654 GGTTGCAGCAGCACATGATGGGCTCGGGCATGTGCTGGTGTCGT-ATTTTTCTTCATCGGGGCAC
1 GGTTGCAGCAGCACATGATAGCCTCGGGCATGTGCTGGTGTC-TCATTTTTCTTCACCAGGGCAC
* * *
12636718 CATCGTCGGAGCATCGCCGAAGAACCTAACCGGCAGCATTGGGGTTCTTG-CGATCGGAAGGG-G
65 CATCGCCGGAGCATCGCCGAAGAACCTAACCGACAGCATTGGGGTTC-CGACGATCGG-AGGGCG
*
12636781 -GGGGTGTGCACACAAGATGTGCGATGGCTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCC
128 AGGGGTGTGCACACAAGATGTGCAATGGCTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCC
* * *
12636845 TCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAG
193 TCATCAAACCTCGAGAACTCACACCCCCTCAAAAAGCATTTGAGATTTTACAGGCTTCCTGCCAG
* * * * *
12636910 TGGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
258 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTGTTCAAATGATCACAAAATCTTGTACACTTCG
*
12636975 AG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCATGTCTACCAAGTTTGG
323 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * * * *
12637039 GGTCAAAACTTC-TTCCAAAAAAATTTTAAAAAAT-CTCAAACCGTAAAAAGGTTT-GAAAATCG
388 GGCCAAAAATCCATT-CAAAAAAATCTTAAAAAATCCT-AAACCGTAAAAA-GTTTCAAAAATCG
* *
12637101 TGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
450 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
12637166 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCTACCTA
515 GAATTTACAAGACATAAAAATAGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTA
** * *
12637231 CCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
580 CCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGC
* * * * *
12637296 CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGTACTGGACC
645 CCACTCGTTTCATCAGTTGGATTAGGCATACGGAGTTCATTCACAGTCTAACATCGTACTGGACC
12637361 GAGGGTT
710 GAGGGTT
12637368 GCGGCAGCAC
Statistics
Matches: 641, Mismatches: 65, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
884 1 0.00
885 72 0.11
886 2 0.00
888 5 0.01
889 272 0.42
890 181 0.28
891 1 0.00
892 102 0.16
893 5 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GGTTGCAGCAGCACATGATAGCCTCGGGCATGTGCTGGTGTCTCATTTTTCTTCACCAGGGCACC
ATCGCCGGAGCATCGCCGAAGAACCTAACCGACAGCATTGGGGTTCCGACGATCGGAGGGCGAGG
GGTGTGCACACAAGATGTGCAATGGCTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTCAAAAAGCATTTGAGATTTTACAGGCTTCCTGCCAGTAG
CCATTAAAGTGTCTAAAATGGGGACACTTTGTTCAAATGATCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
CAAAAATCCATTCAAAAAAATCTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGACATAAAAATAGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCACTC
GTTTCATCAGTTGGATTAGGCATACGGAGTTCATTCACAGTCTAACATCGTACTGGACCGAGGGT
TCCAGTAGTAGGCTCAACAGTACGCAGAGGGGGACCCGACCAATCCCCTGCTTGCGCATCCAGCC
CCTCTGGCCGATTGAGCGACTGCACGCTTTTTTCGTGGGTTGACTTAGGCATACGGGTTTCATTC
CCAGTCTAAGCATATAGAGTTCATTCCCAGTCTATGATCGGA
Found at i:12638466 original size:716 final size:710
Alignment explanation
Indices: 12636654--12638792 Score: 3029
Period size: 716 Copynumber: 3.0 Consensus size: 710
12636644 TATGATCGGA
* * * * *
12636654 GGTTGCAGCAGCACATGATGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACC
1 GGTTGCGGCAGCACATGCT-GCCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACC
* * * **
12636719 ATCGTCGGAGCATCGCCGAAGAACCTAACCGGCAGCATTGGGGTTCTT--GCGATCGGAAGG--G
64 ATCG-CGGAGCATCGTCGAAGAACCTGACCGGCGGCATT-GGGTT-TTCGGCGATCGGGGGGCCG
* * * *
12636780 -GGGGGTGTGCACACAAGATGTGCGATGGCTGCTGGTACTTGGACCTTATATTGGCCCCCTATCC
126 AGGGGGGGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
12636844 CTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCA
191 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCA
*
12636909 GTGGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
256 GTGGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
12636974 GAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCATGTCTACCAAGTTTG
320 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTG
* * * * * * *
12637038 GGGTCAAAACTTCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGGTTTGAAAATCGTG
384 GGGCCAAAACTCCTTCCAGAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATG
* *
12637103 AAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
449 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
12637168 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCTACCTACC
514 ATTTACAAGCCATAAAAATGGCATTGGCAGGAAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
12637233 ACCCTATCGATCCACGGCTTG-TGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
579 ACCCTATCGATCCACGGCTTGACG-ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * *
12637297 -CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGTACTGGACC
643 TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
12637361 GAG
708 GAG
12637364 GGTTGCGGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG-A--
1 GGTTGCGGCAGCACATGCTGC-CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACC
* * * *
12637426 A---C----CATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGAG
64 ATCGCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGTTTTCGGCGATCGGGGGGCC-GAG
12637484 GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
128 GGGGG-GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
12637549 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTATAGGTTTGCTGCCAG
192 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAG
* *
12637613 TAGCCATTAAAGTGTATGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
257 TGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
12637678 GTTTTTAGCTG-ATTTTTTGTGTGCATGCCAAAAAAAATACAAGGATTACGTCTACCAAATTTGG
322 GTTTTTAGCTGAATTTTTT-TGTGCATGCC-AAAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * * * *
12637742 GGCCAAAACTCCTTCCGGAAAAGTTTTAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATTATGA
385 GGCCAAAACTCCTTCCAGAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGA
*
12637807 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA-GCTTAAGGGACCATTGTATGAA
450 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
12637871 TTTACAAGCCATAAAAATGGCATTGGCAGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCA
515 TTTACAAGCCATAAAAATGGCATTGGCAGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* **
12637936 CCCTATCGATCCACGAC-TGACGGATCCCGTCTCTCTGGCCGGCACAGTGCCCGCCCGCCCGCCG
580 CCCTATCGATCCACGGCTTGAC-GATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-
* * * *
12638000 TCTGCTCATTTCGTCGGATGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGCC
643 TC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
12638065 CGAG
707 CGAG
* *
12638069 GGTTGCGGCAGCACATGCTAGCCTCGGGCATGTGCTGGTGCGGCATTTTTCTTTGCCGGGGCACC
1 GGTTGCGGCAGCACATGCT-GCCTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGTCGGGGCACC
** *
12638134 ATCGCCGGAGCATCGTCGAAGAACCTGACCAACGGCATTAGGTTTTCGGCGATCGGGGGGGCCGA
64 ATCG-CGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGTTTTCGGCGATC-GGGGGGCCGA
* * *
12638199 GGGGGGGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCC
127 GGGGGGGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
12638264 TCATCAAACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAG
192 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAG
12638329 TGGCCATTAAAGTGTCTGAAATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCG
257 TGGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTCAAATGGTCACAAAATCTTGTACACTTCG
12638394 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGG
321 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGG
* *
12638459 GCCAAAACTCCATT--TGATAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCAT
386 GCCAAAACTCC-TTCCAGA-AAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAATCAT
* *
12638521 G-AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATG
448 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
12638585 AATTTACAAGACATAAAAATAGCATTGGCATGCAA-AAATATGAAGATGTGCCTAAACCCACCTA
513 AATTTACAAGCCATAAAAATGGCATTGGCA-GGAAGAAATATGAAGATGTGCCTAAACCCACCTA
** *** * *
12638649 CCACCCTCATCGATCCACGGCTTGCAC-ATCTGGTCTCTCTGGCTAACGTAGTGCCCGCTCGTCC
577 CCACCCT-ATCGATCCACGGCTTG-ACGATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * **
12638713 GCCATCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAACATTAGAC
640 GCC-T--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
12638778 CGGACCGAG
702 CGGACCGAG
12638787 GGTTGC
1 GGTTGC
12638793 AGTAGTAGGA
Statistics
Matches: 1276, Mismatches: 110, Indels: 78
0.87 0.08 0.05
Matches are distributed among these distances:
697 1 0.00
698 4 0.00
699 34 0.03
701 2 0.00
702 181 0.14
703 191 0.15
704 104 0.08
705 113 0.09
706 3 0.00
707 1 0.00
708 1 0.00
709 2 0.00
710 53 0.04
712 1 0.00
715 142 0.11
716 258 0.20
717 110 0.09
718 72 0.06
719 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (710 bp):
GGTTGCGGCAGCACATGCTGCCTCGGGCATGTGCTGGTGCGCATTTTTCTTCGTCGGGGCACCAT
CGCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGTTTTCGGCGATCGGGGGGCCGAGGGG
GGGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAGTGGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCAGAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCAGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGACGATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCGCTCGT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
Found at i:12638939 original size:26 final size:26
Alignment explanation
Indices: 12638903--12638953 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12638893 GTTGACTTAG
12638903 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12638929 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12638954 CGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12639834 original size:26 final size:26
Alignment explanation
Indices: 12639798--12639847 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12639788 CCTGACTTAG
12639798 GCATATAGAGTTCATTCCCAATCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
*
12639824 GCATATGGAGTTCATTCCCAATCT
1 GCATATAGAGTTCATTCCCAATCT
12639848 GAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAATCTAA
Found at i:12640732 original size:26 final size:26
Alignment explanation
Indices: 12640696--12640748 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12640686 GTTGACTTAG
12640696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12640722 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12640748 G
1 G
12640749 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12640898 original size:898 final size:900
Alignment explanation
Indices: 12638026--12644044 Score: 7433
Period size: 898 Copynumber: 6.8 Consensus size: 900
12638016 GATGGCTTAG
* * * * * *
12638026 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGCCCGAGGGTTGCGGCAGCACATGCTAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12638091 CTCGGGCATGTGCTGGTGCGGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** * * * *
12638156 ACCTGACCAACGGCATTAGGTTTTCGGCGATCGGGGGGGCCGAGGGGGG-GTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCCG-GGGGGGTGTGCGCACATGATGT
* * *
12638220 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12638285 CACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAGTGGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12638350 TGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12638415 GTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATT-TGATA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAA
** *
12638478 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
12638542 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGACATAAAAATAG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
12638607 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCATCGATCCACGGCTT
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTT
* ** *** ** *
12638672 GCACATCTGGTCTCTCTGGCTAACGTAGTGCCCGCTCGTCCGCCATCCCGATCGTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * ** * *
12638737 GGCTTAGGCATACGGAGTTCATTCACAGTCTAACATTAGACCGGACCGAGGGTTGCAGTAGTAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGG
** * * * * * *
12638802 ATCGACAACATGCAGAGGAGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGAC
774 ATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* ** *
12638867 TGAGTGAGCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12638929 GCATACGGAGTTCATTCCCAGTCTACGATCGGACCAGACCGACGATTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12638994 CTCGGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGGCACCACCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
12639059 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGAGGGG-CCGGGGGGGGGGTGTGCACACAAGA
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGTCC---GGGGGGGTGTGCGCACATGA
* * *
12639123 TGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAGC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * *
12639188 TCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAATGGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
12639253 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-GCTTTTTAGCTGAATTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTT
* * * * *
12639317 TTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTTCTTCCG
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* **
12639382 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
12639447 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
12639512 TGGCATTGGCACACAGAAATGA-GAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGG
581 TGGCATTGGCACACAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * * *
12639576 CTTGTACATCCCGTCTCTCTGGCTGGCATAGT--------GCCCGCCCGCTCGTTTTGTCGGTTG
645 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *** * * *
12639633 GCTTAGGCATACGGCGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACAGTAGTAGAA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGA
** * * * ** * *
12639698 TCGACAGGACACAGAGAGGGACCCGACCGATCCCTAGCTTGCACATCCCGCCCCTCTGGTCGGCT
775 TCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* ** ** *
12639763 GAGCGCCCGCACGCTCGTTTCGTGGCCTGACTTAGGCATATAGAGTTCATTCCCAATCTAA
840 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12639824 GCATATGGAGTTCATTCCCAATCTGAGATCAGACCAGACCAACGATTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** ** **
12639889 CTCGAGCATGTGCTGGTGTAGCATTTTTCTTCACCGGGGCACCATTACCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * **
12639954 ACCTGACCGGTGGCATTGGGGTTCCGGCGATAGGTGGGGT-CGGGGGGGTGTGCGCACAACATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGTCCGGGGGGGTGTGCGCACATGATGT
*
12640018 GCGATGGGTGCTGGTACTTGG-CCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
12640082 CTCCCCCTTAAAGAGCATTGGAGATTTTACAGGATTGCTGCCAGTAGCCATAAAAGTGTATGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
12640147 TGGGGACACTTTTTTCAAATAGTCACAAAATCTTATACACTTCGAGTTTTTAGTTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12640212 GTGCATGCCAACAAAAATACAAGGATCACGTCCACTAAGTTTGGGGCCAAAACTCCATCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
12640277 AATTTT-AAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
12640341 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGACATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12640406 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12640471 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCTGCTCGTTTCGTCGATTGGCTTT
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
12640536 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACGGAGGGTTATGGCAGCAGGATCGGT
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGT
* * *
12640601 AGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
780 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
12640666 CCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
12640722 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACAGTTGCGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12640787 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGTACCATCGCCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
***
12640852 ACCTGACCGGCGGCATTGGGGTTCAAACGATCGGGGGGTCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCCGGGGGGGTGTGCGCACATGATGTG
* * ** *
12640917 CGATAGGTGCTGGTACTTGGCCCTGATATTGGCCTTCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12640982 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCCATTAAAATGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12641046 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
12641111 TGCATGCCAATAAAAATACAAGGATCATGGCAACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
12641176 ATTTTATAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAAGTGAGTCGTCT
456 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTCT
* * *
12641240 TGCCATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGAC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
12641305 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12641370 GCATCCC-TCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGATCGGCTTA
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
12641434 GGCATACGAAGTTCATTCCCAGTTTAAGATCAGACCAGA-TCAAGGGTTGTAGTAGCAAGATCAG
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGCAGGATCGG
* * * * * * *
12641498 CAGCACGCAGAGGGGGACCCGACCGATCCACGACTTGTGCATCCTGGCCCTCTGGCCGGCTGAAC
779 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
12641563 ACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
12641620 G-AT-C-G-G---------A--C---G----G----GATTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12641659 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
12641724 ACCTGACCGGCAGCGTTGGGGTTCCGACGATCAGGGGGG-CCGGGGGGGTGTGCGCACACGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGTCCGGGGGGGTGTGCGCACATGATGT
* * *
12641788 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12641853 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCT-AGA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-A
* * * *
12641916 ATGGGCAAACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
12641981 TGTGCATGCCAA-AAAAATACCAAGGATCACGTCTACCAAGTTT-GGGATAGAAAATCCTTCCGA
389 TGTGCATGCCAACAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGA
* * ** * ** * * *
12642044 AAAAATTTAAAAAAATCCCGAACCACAAAATGTTTTGAAAATAATGAAAAATAGAAAATGAGTCA
452 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
12642109 TCTTGCCAAGAAACTTCACGTAAAGGCTTAAGGGACCATTGTAAGAATTTACAGGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
12642174 GGCATTGGTACACAGAAATATGAAGATATGCCTCAACCCACCTACCACCCTATCAATCCACGGCT
582 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * * *
12642239 TGCGCATCTCGTCTCTCTGGCCGACGTAACGCACGTCCGCTCGCCCGCTCGTTTCGTCGGTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** * *
12642304 TTAGGCGTACGGTGTTCATTCCCAGTCTAAGATCAAACTGGA-TGGAGGGTTGCGGCAGTAGGAT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGCAGGAT
* ** * * * *
12642368 CGGTGGCACATAGAGGGGGACACGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTG
776 CGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * ** * * *
12642433 AACGCCTGCACGTTTGTTTCATGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12642493 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12642558 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCAGGGCACCAT--------CA---CCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * * *
12642612 AGCTGACCGACGGCATTGGGGTTCTGGTGATCACGGGGG-CCGAGCGGGGGGGTACGCACATGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGTCCG-G-GGGGGTGTGCGCACATGAT
*
12642676 GTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
12642741 CACA-CCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12642805 AATGGGGACATTTTTTTCAAATGGTCAC---A------A-A--T----TTTTT---T--A-----
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * ** *
12642844 ---TGCATGCCAACAAAAATACAAGGATCATGGCAACCAAGTTTGGGGCCAAAACTATTTCTGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * *
12642906 AAAATTTTATAAAATCCCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGT
453 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12642971 CTTGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12643036 GCATTGGCACTA-AAAAATATGAAAATGTGCCTAAACCCACCTACCGCCCTATCGATCCATGGCT
583 GCATTGGCAC-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
12643100 TGCGCATCCCATCTCTCTAGCCGACGTAGTGCCTGCCCGCCCGACCGCTCGTTTCGTCGATTGGC
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** *
12643165 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACAT-AGTGTTGTGGCAGCAGGAT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-TGAGGGTTGTGGCAGCAGGAT
* * * ** ***
12643229 CGGTAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCTATTG
776 CGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
12643294 AGCGCCCGCTCGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAA
841 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * ** *
12643354 GTATACGGAGTTCATTCCCAGTCTAAGATTGGA-CTGAACCGAAGGTTATGAC-GACACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAG-CACATGCTG
* * * * * *
12643417 GGCTCAGGCATGTGGTGGTGCCACATTTTTCTTCGTCGAGGCA-CATCGTCGGAGCATCACCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * * *
12643481 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCC-AGGGGGTGTGTGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCCGGGGGGGTGTGCGCACATGATG
* *
12643545 TGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGATCTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12643610 ACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12643675 ATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
12643740 T-TTCATGCCAACAAAAATACAAGTATCACGTTTACCAAGTTTGGGGCCAAAACTCCTT-CTAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* **
12643803 AAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCAT-AAGAAATAGAAGGCGAGTCG
454 AAATTTT-AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAA-AAATAGAAAACGAGTCG
12643867 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
12643932 GGCATTGGCACACAAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATTGATCCACGGCT
582 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
12643997 TGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
12644045 CCGCCAGCTC
Statistics
Matches: 4422, Mismatches: 582, Indels: 230
0.84 0.11 0.04
Matches are distributed among these distances:
860 6 0.00
861 502 0.11
862 12 0.00
863 1 0.00
868 84 0.02
869 84 0.02
870 5 0.00
871 48 0.01
872 526 0.12
873 211 0.05
874 7 0.00
875 1 0.00
876 2 0.00
877 1 0.00
878 2 0.00
879 1 0.00
880 2 0.00
881 2 0.00
883 1 0.00
885 5 0.00
886 1 0.00
887 1 0.00
888 42 0.01
889 2 0.00
890 364 0.08
891 221 0.05
892 43 0.01
894 1 0.00
895 327 0.07
896 14 0.00
897 264 0.06
898 756 0.17
899 273 0.06
903 141 0.03
904 4 0.00
905 7 0.00
906 210 0.05
907 123 0.03
908 124 0.03
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGTA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12645066 original size:26 final size:26
Alignment explanation
Indices: 12645037--12645089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12645027 GTTGACTTAG
**
12645037 GCATACGGAGTTCATTGTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12645063 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12645089 G
1 G
12645090 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12645966 original size:26 final size:26
Alignment explanation
Indices: 12645936--12645988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12645926 GTTGACATAG
12645936 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
12645962 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12645988 G
1 G
12645989 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12646877 original size:26 final size:26
Alignment explanation
Indices: 12646825--12646877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12646815 GTTGACTTAG
*
12646825 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12646851 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12646877 G
1 G
12646878 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12648670 original size:26 final size:26
Alignment explanation
Indices: 12648634--12648687 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
12648624 TGGGTTGACT
* *
12648634 TAGGCATACGGAGTTCATTTCTAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
12648660 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
12648686 TA
1 TA
12648688 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:12649565 original size:26 final size:26
Alignment explanation
Indices: 12649535--12649587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12649525 GTTGACTTAG
*
12649535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12649561 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12649587 G
1 G
12649588 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12651308 original size:892 final size:866
Alignment explanation
Indices: 12644360--12649898 Score: 4784
Period size: 901 Copynumber: 6.2 Consensus size: 866
12644350 GGGGTTCCGA
* * ** *
12644360 CGATGGGTGCTGGTACTTGACCCTTATATTGGCCCTCTATCCCAAATCAAAACTCGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12644425 -CCCCCTTAAAGAGC-------ATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12644482 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
131 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* **
12644546 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTTTTAAAAAA
195 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * *
12644610 ATTTTAAAAAATCCCGAACCGCAGAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
260 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
12644675 GCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCA
325 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
12644740 TTGGCATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTTTCGATCCACGGCTTGCG
390 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * ** *
12644805 CATCCCGTCTTTCTGGCCAGCGTAGTGCCTGCCCGCCCGCTCGCCCGCCCGCTTGTTTCGTCGGT
455 CATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAGT
* * * * *
12644870 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGAC-CAGACTGAGGGTTATGGTAGCA
516 TGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACTCGGACTGAGGGTTGTGGCAGCA
* * * * * * *
12644934 GGATCAGCAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
581 GGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCA
* ** * * *
12644999 GCTAAGCGTGCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGTCAGTCTAAG
646 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA-T-TC---C-CAG
* * * * *
12645064 CATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGACAGCACATGCTGGGC
705 --T-CGAAG---A-T--CAG----A-A-CGCA---GACCGAGGGTTACGGCAGCACATGCTGGGC
* **
12645129 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGGTTTGTCGGAGAA
752 TCGGGCATGTGCTGGTGCTGCATTTTTCTCCACCGGGGCACCAT---C--------GTCGGAGAA
* * * *
12645194 CCTGATCGGCGGCATCGGGGTT-CAAGCGATCGGGGGTGCCGGGGGGTGTGCACAC-TGATGTG
806 CCTGA-CGGCAGCATTGGGGTTCCGA-CGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTG
* *
12645256 CGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
12645321 TCCTCATTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCATTAGCCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12645386 GGGGACACTTTTTTTCGAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
131 -GGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* *
12645451 GTGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCC--T-GAAAA
194 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* ** *
12645513 AATTTTAAAAAATCCCGAACCGGCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
259 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
12645578 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGC
324 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
12645643 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT-CCACTCTATCGATCTACGACTTGC
389 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12645707 GCATCCCGTCTCTCTAGCCGGCGTAGTGCTCGCCCGCCCGCCCGTCCGCTCGTTTCGTCAGTTGG
454 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAGTTGG
* * * *
12645772 CTTAGGCATACGGAGTTCATTCCCAGTCTATGATCGGAC-CAGACTGAGGGTTGTGGCAGCAGGA
519 CTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACTCGGACTGAGGGTTGTGGCAGCAGGA
* * * * * * * *
12645836 TTGGTAGCACGTAGAGGGGGACCCAACCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGCC-GAC
584 TCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAG-C
* * * * *
12645900 TGAGCGCCTGGACGCTCGTTTCATGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGCA
648 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC---G--
* * *
12645965 TATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTC
708 -A---AG---A-T--CAG----A-A-C-G--CAGACCGAGGGTTACGGCAGCACATGCTGGGCTC
* * ** * * * * * *
12646030 GAGTATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCGTCGGAGAACATAACCGACAGC
754 GGGCATGTGCTGGTGCTGCATTTTTCTCCACCGGGGCACCATCGTCGGAGAACCTGA-CGGCAGC
*
12646095 ATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTG
818 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
12646144 CGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTAGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12646209 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12646274 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGCTCAATTTTTTTA
131 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
** *
12646339 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTTCAAAACTCCTTCCGAAAAA
195 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * *
12646404 CTTTTAAAAAATCCCGAA-CTTCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
260 ATTTTAAAAAATCCCAAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12646468 TGCCATGAAACTTCACGTGAAGGGTT--GGGGCCATTGTATGAATTTACAAGCCATAAAAATGGG
324 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * *
12646531 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGTCACCATATCGATCCATGGCCTGC
389 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
12646596 GCATCCCGTCTCTCTGGTCGACGTAGTTCCTG-CTCGACCGCCCGTCCGCTCGTTTTGTCAGTTG
454 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-GCCCGCCCGCCCGCTCATTTCGTCAGTTG
* * * ** * ** **
12646660 GCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAGACCAAAGGTTACGATAGCAGG
518 GCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACTCGGACTGAGGGTTGTGGCAGCAGG
* * * * * * *
12646724 ATCGACAGCATGTAG-AGGGTGACCCGGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC-G
583 ATCGGCAGCACGCAGAAGGG-GACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAG
* * * *
12646787 ACTGAGCGCCTGCACACTCATTTTGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCTGTCTAA
647 -CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTC---
* ** *
12646851 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGTTGCACATGCTTGG
707 G-----A-AG---A-T--CA--G--A-A-C-G--CAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** *
12646916 CTCGAGG-ATTTGCTGGTGCTGTATTTTTCTTCGTCAGGGCACCATTGCCAGAGCATCGCCGGAG
751 CTCG-GGCATGTGCTGGTGCTGCATTTTTCTCCACCGGGGCACCA-T--C---G--T---CGGAG
* *
12646980 AACCTAACCGGC-GACATTGGGGTTCCGATGATCGGGGGGGCCAGGTGGGGTGTGCGCACAT-AT
804 AACCTGA-CGGCAG-CATTGGGGTTCCGACGATC-GGGGGGCC-GG-GGGGTGTGCGCACATGAT
12647043 GTG
864 GTG
* * *
12647046 CGGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12647111 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAATGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
12647175 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTG
131 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* *
12647240 TGCTTGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACAT--TTTCTGAAA
195 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTTC-GAAA
* * * * * *
12647303 AAATTATAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCATC
258 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12647368 TTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
323 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12647433 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTG
388 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * ** * * *
12647498 CGCATCCCGTCTATCTGGTCGGCATAGTGCCCGCAC-GCTCGCCCACCCGTTTGTGTCATCGGTT
453 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CTGCCCGCCCGCCCGCTCATTTCGTCAGTT
** * * *
12647562 GGCTTAGGCATATAGAGTTCATTCCCA-ATCTAAGATCGGAC-CAGACCGAGGG-T-T----GC-
517 GGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATCAGACTCGGACTGAGGGTTGTGGCAGCA
* * * * *
12647618 GG-T----AGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCG
581 GGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCA
* *
12647678 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGATTCCGAGTCTAAGCATATGGAGTTCATACTG-
646 GCTGAGCGCCCGCACGCTCATTTCGT-GG--G-TT--GA--CT-----TA--G-G--CATAC-GA
12647742 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCGAGTCTAAGATCGGACCAGACCGAGGGTT
692 AGTTCATTCCCAGTC---G---A---AG---A-T-C-AG----A-A-C-G--CAGACCGAGGGTT
* ** ** * *
12647807 ACGGTAGCACATGCTGGGCTCAAGTTTGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCG
733 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTCCACCGGGGCACCA---
* * *
12647872 TCGGAGCATCACCGGAGAACCTGACCGG-AGGCGTTGGGGTTCCGATGATCGGGGGGGTCGGGGG
795 TC---G--T---CGGAGAACCTGA-CGGCA-GCATTGGGGTTCCGACGATC-GGGGGG-CCGGGG
12647936 GGTGTGCGCACATGATGTG
848 GGTGTGCGCACATGATGTG
* * *
12647955 CAATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAT
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
12648020 GCCCCCTTAAAGAGCATTTGAGATTTTGCTGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGGAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
12648085 GGGACACTTTTTTCCAATGGTCACAAAATCTTGTAAAATTCGAGTTTTTAGCTGAATTGTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
12648150 GCATGCTAAAAAAAATACAAGGATCACGTATTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAC
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
*
12648215 TTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTT
261 TTTT-AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* ** * *
12648280 GCCATGAAACTTGACG-GAAAGTTTTAAGGGAGCATTGTATGAATTTACAGGCCATAAAAATGGC
325 GCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
12648344 ATTGGCATGCAAAAATATGAAGATGTGCGTAAACCCACCTACCA-TCTATCGATCCATGGCTTGC
389 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * ** *
12648408 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCACCTGCCCGCCCGCTTGTTTCGTCGGTTGG
454 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAGTTGG
* * * * * * * ** *
12648473 CTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATCAGAC-CAGACAGAGGATTGCGGTGGTAGGA
519 CTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACTCGGACTGAGGGTTGTGGCAGCAGGA
* * * * * * ** * * * *
12648537 TTGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTGTGCATGCTACCTCTTTTGCCGGCT
584 TCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCT
* * *
12648602 GAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAGGCAT
649 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TTC----CCA-G--T
* * * *
12648667 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCC
706 -CGAAG---A-T--CAG----A-A-C-G--CAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
** * * * * *
12648732 GGCATGTGCTGGTGCCCCATTTTTCTTCATCGGGCCATCATCGCCGGAGCAACGCCGGAGAACTT
755 GGCATGTGCTGGTGCTGCATTTTTCTCCACCGGGGCACCATCGTCGGAG-AA---C------C-T
* * *
12648797 GACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACAT-ATGTG
809 GA-CGGCAGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12648856 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCAA
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12648921 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * **
12648986 GGGGACACTTTTTTCAAATGATCACAAAATCTAGTACA-TATCGAGTTTTTAGCTGAATGCTTTT
131 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCAAGTTTTTAGCTGAATTTTTTT
* * * *
12649050 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAT-TTTTCCAAAA
194 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAA
* * ** *
12649114 AAATTTTAAAAAATCCCAAACCGCAAAACGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
258 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12649179 TTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
323 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
12649244 CATTGGCATGCAGAAATATGAAGATTTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTG
388 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * *
12649309 TC-CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCCCCCGCCCGCCCGCTCGTTTCGTCGGTT
453 -CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAGTT
* * * * * * * *
12649373 GGCTTAGGCATATGGAGTTAATTCTCAGTCTAAGATCCGA-TCGGA-TCGAAGGTTGCGGTAGCA
517 GGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACTCGGACT-GAGGGTTGTGGCAGCA
* ** * * * * *
12649436 AGATCGTTAGCA-G-AG--GGGGACCTGACCGATCCTCGACTTACGCATCCCGCTCCTCTGGCCG
581 GGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCA
* * *
12649497 GCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
646 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCGAAG
* ** *
12649562 CATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGCTCAAGGGTTATGATAGCACATGCCGGGC
711 -AT-CAGA----A----C-G-C----A---GACC-G----AGGGTTACGGCAGCACATGCTGGGC
** * * * * **
12649627 TCAAGCATGTGTTGGTGCCGTATATTTT-TTCATTGGGGCACCATCGTCAGAGCATCATCGGAGA
752 TCGGGCATGTGCTGGTGCTGCAT-TTTTCTCCACCGGGGCACCA---TC---G-----TCGGAGA
* * * * * *
12649691 ACCTGACCGACGGCATTGGGGTTCCTG-TGATCGAGGGGGTCGGGGGGGTGTGCACACCTGATGT
805 ACCTGA-CGGCAGCATTGGGGTTCC-GACGATCG-GGGGG-CCGGGGGGTGTGCGCACATGATGT
12649755 G
866 G
* *
12649756 CGATGGGTGCTGGTACTTGGCCCCTATATGGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12649821 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12649885 GGGGACACTTTTTT
131 -GGGACACTTTTTT
12649899 AGCTGAATTT
Statistics
Matches: 3986, Mismatches: 477, Indels: 357
0.83 0.10 0.07
Matches are distributed among these distances:
881 1 0.00
884 1 0.00
885 3 0.00
886 2 0.00
887 125 0.03
888 245 0.06
889 322 0.08
890 93 0.02
891 68 0.02
892 13 0.00
893 11 0.00
894 3 0.00
895 4 0.00
896 62 0.02
897 23 0.01
898 170 0.04
899 375 0.09
900 108 0.03
901 540 0.14
902 334 0.08
903 368 0.09
904 221 0.06
905 4 0.00
906 66 0.02
907 46 0.01
908 26 0.01
909 455 0.11
910 213 0.05
911 2 0.00
912 1 0.00
913 2 0.00
915 3 0.00
916 2 0.00
917 3 0.00
918 1 0.00
920 2 0.00
921 68 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCT
TAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACTCGGACTGAGGGTTGTGGCAGCAGGATC
GGCAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGA
GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCGAAGATCAG
AACGCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCT
CCACCGGGGCACCATCGTCGGAGAACCTGACGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGG
GGGGTGTGCGCACATGATGTG
Found at i:12653073 original size:26 final size:26
Alignment explanation
Indices: 12653043--12653095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12653033 GTTGACTTAC
12653043 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12653069 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12653095 G
1 G
12653096 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12653734 original size:26 final size:26
Alignment explanation
Indices: 12653704--12653756 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12653694 GTTGACTTAG
* *
12653704 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
12653730 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
12653756 G
1 G
12653757 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:12653823 original size:661 final size:658
Alignment explanation
Indices: 12652551--12653868 Score: 1733
Period size: 661 Copynumber: 2.0 Consensus size: 658
12652541 TAGCTGAATT
* *
12652551 TTTTTGTGCATGCAAACAAAAATACAAGGATCATGTCAACCAAGTTTGGGGCCAAAACTCCTTTC
1 TTTTTGTGCATGCAAACAAAAATACAAGGATCATGTCAACCAAGTTTGAGGCCAAAACTCCTTCC
* * * **
12652616 GAAAAAATTTTAAAAAATCCCAAACCTCAAAAGGTTTCGAAAATTGTAAAAAATAGAAAACGAGT
66 GAAAAAAATTTAAAAAATCCCAAACCTCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGT
*
12652681 CGTCTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 CGTCTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAA
* * *
12652746 TGGCATTGGCATGCAAAAATATGAAAAAGTGCCTAAACCCACCTACCACCCTATCCATCCACGGC
196 TGGCAATGGCACGCAAAAATATGAAAAAGTGCCTAAACCCACCTACCACCCTATCCATCCACAGC
* ** ** * * *
12652811 TTACGCATCCCGTCTCTCGGTCGGCGTAGTGCCCACCTGCCTGCCTGCCCGCTCGTTTCGTCGGT
261 TTACGCATCCCGTCTCTCGGCCAACGTAGTGCCCACCTGCCCACCCGCCCGCACGTTTCATCGGT
** * * * * * **
12652876 TGGCTTAGGCATACAGAGTTTTTTCCCAGTTTAAGATTGGTTCGGACTGAGGGTTGTGGCAGCAG
326 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAG
* * ** * ** *
12652941 GATTGGTAACACGCAGAAGGGGACCCTGTCGATCCCCGACTTTTGCATCCCGCCCATCTGGCCGA
391 AATCGACAACACGCAGAAGGGGACCCTGCCGATCCCCGACTTGCGCATCCCACCCATCTGGCCGA
* * *
12653006 CTGAGTGCCCGCATGCTCGTTCTGTGGGTTGACTTACGCATACGAAGTTCATTCCCAGTCTAAGC
456 CTGAG-ACCCGCACGCTCGTTCTATGGGTTGACTTACGCATACGAAGTTCATTCCCAGTCTAAGC
* * * *
12653071 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGCTAGGCT
520 ATACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCGACGGTTGCGGCAGCACATGCTAGGCT
* * * *
12653136 TGGACTTGTGTAGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACTGGAGAAC
585 CGGACATGTGTAGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGAAC
12653201 CTGACCGAG
650 CTGACCGAG
* * * *
12653210 TTTTTGTGCATGCCAACAAAAATATAAGGATCATGTCTACCAAGTTTGAGGCTAAAACTCCTTCC
1 TTTTTGTGCATGCAAACAAAAATACAAGGATCATGTCAACCAAGTTTGAGGCCAAAACTCCTTCC
* * * *
12653275 GAAAAAAATTTAAAAAGTCTCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
66 GAAAAAAATTTAAAAAATCCCAAACC-TCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAG
12653339 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAA
130 TCGTCTTG-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAA
* * * * *
12653404 AATGGCAATGGCACGTAGAAATAT-AAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTC
194 AATGGCAATGGCACGCAAAAATATGAAA-AAGTGCCTAAACCCACCTACCACCCTATCCATCCAC
* *
12653468 AGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGTCC-GCCCACCCGCCCGCACGTTTCA
258 AGCTTACGCATCCCGTCTCTC-GGCCAACGTAGTGCCC-ACCTGCCCACCCGCCCGCACGTTTCA
12653532 TCGGTTGGCTTAGGCATAC-GTAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGG
321 TCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGG
* * * * * * *
12653596 CAGCAGAATCGACAGCACGCAGAGGGGGACTC-GACCGATCCCTGGCTTGCGCATCCTACCCCTC
385 CAGCAGAATCGACAACACGCAGAAGGGGACCCTG-CCGATCCCCGACTTGCGCATCCCACCCATC
* * *
12653660 TGGCCGGCTGA-ACCCTTGCACGCTCATT-TCATGGGTTGACTTAGGCATAC-AGAGTTCATTCC
449 TGGCCGACTGAGACCC--GCACGCTCGTTCT-ATGGGTTGACTTACGCATACGA-AGTTCATTCC
*
12653722 TAGTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATC-GAACCGGACCGACGGTTGCGGCAGCA
510 CAGTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAG-ACCGGACCGACGGTTGCGGCAGCA
* *
12653786 CATGCTGGGCTCCGG-CATGTGCT-GGTGCC-TCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
574 CATGCTAGGCT-CGGACATGTG-TAGGTGCCGT-ATTTTTCTTCGTCGGGGCACCATCGCCGGAG
12653848 CATCACCGAAGAACCTGACCG
636 CATCACCGAAGAACCTGACCG
12653869 GCAGTATTAG
Statistics
Matches: 569, Mismatches: 75, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
659 126 0.22
660 134 0.24
661 304 0.53
662 5 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (658 bp):
TTTTTGTGCATGCAAACAAAAATACAAGGATCATGTCAACCAAGTTTGAGGCCAAAACTCCTTCC
GAAAAAAATTTAAAAAATCCCAAACCTCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGT
CGTCTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAA
TGGCAATGGCACGCAAAAATATGAAAAAGTGCCTAAACCCACCTACCACCCTATCCATCCACAGC
TTACGCATCCCGTCTCTCGGCCAACGTAGTGCCCACCTGCCCACCCGCCCGCACGTTTCATCGGT
TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAG
AATCGACAACACGCAGAAGGGGACCCTGCCGATCCCCGACTTGCGCATCCCACCCATCTGGCCGA
CTGAGACCCGCACGCTCGTTCTATGGGTTGACTTACGCATACGAAGTTCATTCCCAGTCTAAGCA
TACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCGACGGTTGCGGCAGCACATGCTAGGCTC
GGACATGTGTAGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGAACC
TGACCGAG
Found at i:12655828 original size:26 final size:26
Alignment explanation
Indices: 12655798--12655850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12655788 GTTGACTTAG
* *
12655798 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12655824 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12655850 G
1 G
12655851 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:12657044 original size:26 final size:26
Alignment explanation
Indices: 12656993--12657045 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12656983 GTTGACTTAG
*
12656993 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
* **
12657019 GCATACGGAGTTCATTCTTAGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
12657045 G
1 G
12657046 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:12658804 original size:26 final size:26
Alignment explanation
Indices: 12658768--12658820 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12658758 GTTGACTTAG
12658768 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12658794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12658820 G
1 G
12658821 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12659786 original size:900 final size:901
Alignment explanation
Indices: 12657893--12660075 Score: 3230
Period size: 900 Copynumber: 2.4 Consensus size: 901
12657883 TGACTTAGGC
* * *
12657893 ATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
* *
12657958 C-AGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGCCACCATCGTCGGAGCATT-GCCCGGA
66 CGA-GCATGTGCTGGTGCCACATTTTTCTTCGCT-GGGGCACCATCGTCGGAGC-TTCG-CTGGA
* * * *
12658020 GAACCTGACCGGCGACATTGGTGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCAAATGATGT
127 GGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
12658084 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12658149 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12658214 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
12658279 GTGCATGCCAACAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTAGTTCCAAAAA
387 GTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTAGGGGCTAAAACTACTTCCAAAAA
* *
12658344 AATTTTAAAAAATCACGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
452 AATTTAAAAAAATCACGAACCC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
12658409 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
12658474 ATTGGCATGCAGAAATATGATGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGACACGCAGAAATATGAAGATGTACCTAAACACACCTACCACCCTATCGATCCACGGCTTGC
* * **
12658539 GCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCTGCCCGCCTACTCATTTCGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCCCGCCCACTCATTTCAACGGTTGG
* * * * *
12658604 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGCGATAGTAGGAT
711 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGCACCAAGGGTTGCGACAGCAGGAT
*
12658669 CCGCAGCATGCAGAGGGGGACCCGACCGATCCCCAACTTGCGCATCCCGCCCCTCTGGTCGGCTG
776 CCGCAGCAT-CAGAGGGGGACCCGACCGATCCCCAACTTACGCATCCCGCCCCTCTGGTCGGCTG
* * *
12658734 AGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
840 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * *
12658796 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGATACGGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
* * *** *
12658861 CGGGCATGTGCTGGGGTTGCATTTTTCTTCGCTGGGGCTCCATCGTCGGAGCTTCGCTGGAGGAC
66 CGAGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCTTCGCTGGAGGAC
* * *
12658926 CTGATCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
12658991 TGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
12659056 CCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATAAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
12659121 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
12659186 ATGCCAATAGAAATAAAAGGATCATGTCTACCAAGTTCAGGGGC-AAAACTCCTTCC-GAAAAAT
391 ATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTT-AGGGGCTAAAACTACTTCCAAAAAAAT
* ** *
12659249 TTAAAAAAATCCTCGAACCC-AAAAGTTTTGAAAATCATGCAAAATAGAAAACGAGTCGTCTTGC
455 TTAAAAAAAT-CACGAACCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
12659313 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
12659378 GACACGTAG-AATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GACACGCAGAAATATGAAGATGTACCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
12659442 TCCCGTCTCTCTGGCTTG-CGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCAACGGTTGGCT
649 TCCCGTCTCTCTGGC-CGACGTAATGCCCGCCCGCCCGCCCGCCCACTCATTTCAACGGTTGGCT
* * *
12659506 TAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGATTGCACCGAGGGTTGCCG-CAGCAGGATC
713 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGCACCAAGGGTTG-CGACAGCAGGATC
* * * * *** *
12659570 GGTAGCGCAT-AGAGGGGGACTCGATCGATCCCCGGTTTACGCATCCCGCCCCTCTGGTGGGCTG
777 CGCA--GCATCAGAGGGGGACCCGACCGATCCCCAACTTACGCATCCCGCCCCTCTGGTCGGCTG
*
12659634 AGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
840 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * *
12659696 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCGCATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
* *
12659761 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCAT--GGCACCATCGCCGGAGCATCG-TCGGA-
66 CGAGCATGTGCTGGTGCCACATTTTTCTTCG-C-TGGGGCACCATCGTCGGAGCTTCGCT-GGAG
* * * *
12659822 GATCCTGACCGGTGGCATTGGGGTTTCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGT
128 GA-CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * *
12659887 GCAATGGGTACTAGTACTTGGCCCTTATATT-GCGCCCTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12659951 CA-CCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTTCCAGTAGCCGTTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12660015 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
12660076 ACGAGTTTTT
Statistics
Matches: 1153, Mismatches: 113, Indels: 33
0.89 0.09 0.03
Matches are distributed among these distances:
898 116 0.10
899 36 0.03
900 453 0.39
901 115 0.10
902 55 0.05
903 372 0.32
904 6 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCTTCGCTGGAGGAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTAGGGGCTAAAACTACTTCCAAAAAAATT
TAAAAAAATCACGAACCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGA
CACGCAGAAATATGAAGATGTACCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCCCGCCCACTCATTTCAACGGTTGGCTTAG
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGCACCAAGGGTTGCGACAGCAGGATCCGCA
GCATCAGAGGGGGACCCGACCGATCCCCAACTTACGCATCCCGCCCCTCTGGTCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
Found at i:12666934 original size:26 final size:26
Alignment explanation
Indices: 12666905--12666956 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12666895 GTTGACTTAG
12666905 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGTGTTCATTCCCAGTCTAA
*
12666931 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGGTGTTCATTCCCAGTCTAA
12666957 CATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGTGTTCATTCCCAGTCTAA
Found at i:12667830 original size:26 final size:26
Alignment explanation
Indices: 12667801--12667853 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12667791 GTTGACTTAG
12667801 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12667827 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12667853 G
1 G
12667854 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12669133 original size:708 final size:711
Alignment explanation
Indices: 12667827--12669280 Score: 2125
Period size: 708 Copynumber: 2.0 Consensus size: 711
12667817 CCCAGTCTAA
* * * * *
12667827 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAAGGGTTGCGATAGCACATGCTGGG
1 GCATATGGAGTTCATTCCTAGTCTAAGATTGGATCGAACCAAGGGTTGCGACAGCACATACTGGG
* * **
12667892 CTCGGGCACGTGCTAGTGCCTCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCTGAGA
66 CTCGGGCACGCGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTAGGAGA
* * *
12667957 ACCTAACTGGCGGCATTAGGGTTCCGACGATCGGGGGGCCAGGGGTGTGTGCGCACATGATGTGT
131 ACCTAACCGGCGGCATCAGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGT
* *
12668022 GATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACA
196 GATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACA
* * *
12668087 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
* *
12668152 GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTACCTGAATTGTTTTAT
326 GGGACACCTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAATTTTTACCTAAATTGTTTTAT
* * * * * *
12668217 GCATGCCAAAAAAAATACATGGATCATGTCTACTATGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 CCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* *
12668282 TTTTAAAAAATCCCGAACCGCAAAAAGGATCCAAAATTGTGAAGAATAAAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGGATCCAAAATTGTAAAAAATAAAAAACGAGTCGTCTTG
* *
12668347 CCATGAAACTTCACGTGAAGGCTTAAGGGACTATTATATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTACATGAATTTACAAGCCATAAAAATGGCAT
** *
12668412 TGGCATGCAGAAATATCAAGATGTGCCGAAACACACCTACCATCCTATCGATCCACGGCTTGCAC
586 TGGCACACAGAAATATCAAGATGTGCCGAAACACACCTACCACCCTATCGATCCACGGCTTGCAC
* * **
12668477 ATCCTGTCTCTCT-GACCGACGTAGTGCCCGCC-CA-CTCGCTCATTTCGTCGGTTGGCTTAG
651 ATCCCGTCTCTCTAG-CCGACGTAGTG-CCGCCGCACCCCGCTCATTTAATCGGTTGGCTTAG
* *
12668537 GCATATGGAGTTCATTCCTAGTCTAAGATTTGA-CTGAACCGAGGGTTGC-AGCAGCACATACTG
1 GCATATGGAGTTCATTCCTAGTCTAAGATTGGATC-GAACCAAGGGTTGCGA-CAGCACATACTG
* * * *
12668600 GGCTCGGGCATGCGCTGGTGCCACATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCGTAGGA
64 GGCTCGGGCACGCGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTAGGA
* * *
12668665 GAACCTGACCGGCGGCATCGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTG-GCTCATGATG
129 GAACCTAACCGGCGGCATCAGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATG
* *
12668728 TGTGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGTGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTC
*
12668793 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * * *
12668858 ATAGGGACAGTTTTTTCAAATAGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTAAATT-TTT
323 ATAGGGACACCTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAATTTTTACCTAAATTGTTT
* *
12668922 TTTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
388 TATCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
** * *
12668987 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCTAAAATCT-TAAAAAATAGAAAACGAGTCGT
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGGATCCAAAAT-TGTAAAAAATAAAAAACGAGTCGT
* *
12669051 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCCTGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTACATGAATTTACAAGCCATAAAAATG
* * * *
12669116 GCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACACAGAAATATCAAGATGTGCCGAAACACACCTACCACCCTATCGATCCACGGCTT
* **
12669181 GCGCATCCCGTCTCTCTAGCCGGTGTAGTGCCGCCTGCACGCCCGCTCATTTAATCGGTTGGCTT
647 GCACATCCCGTCTCTCTAGCCGACGTAGTGCCGCC-GCAC-CCCGCTCATTTAATCGGTTGGCTT
*
12669246 AT
710 AG
** *
12669248 GCATATGGAACTCATTCCCAGTCTAAGATTGGA
1 GCATATGGAGTTCATTCCTAGTCTAAGATTGGA
12669281 GCTGAGGGTT
Statistics
Matches: 662, Mismatches: 73, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
707 5 0.01
708 259 0.39
709 191 0.29
710 148 0.22
711 59 0.09
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (711 bp):
GCATATGGAGTTCATTCCTAGTCTAAGATTGGATCGAACCAAGGGTTGCGACAGCACATACTGGG
CTCGGGCACGCGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTAGGAGA
ACCTAACCGGCGGCATCAGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGT
GATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
GGGACACCTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAATTTTTACCTAAATTGTTTTAT
CCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGGATCCAAAATTGTAAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTACATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATCAAGATGTGCCGAAACACACCTACCACCCTATCGATCCACGGCTTGCAC
ATCCCGTCTCTCTAGCCGACGTAGTGCCGCCGCACCCCGCTCATTTAATCGGTTGGCTTAG
Found at i:12669439 original size:26 final size:26
Alignment explanation
Indices: 12669403--12669455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12669393 GTTGACTTAG
* *
12669403 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12669429 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12669455 G
1 G
12669456 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12670335 original size:26 final size:26
Alignment explanation
Indices: 12670305--12670357 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12670295 GTTGAGTTAG
12670305 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
12670331 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12670357 G
1 G
12670358 ATTGGATGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12670647 original size:902 final size:893
Alignment explanation
Indices: 12668537--12673668 Score: 7085
Period size: 892 Copynumber: 5.7 Consensus size: 893
12668527 GTTGGCTTAG
* * * * * *
12668537 GCATATGGAGTTCATTCCTAGTCTAAGATTTGACTGAACCGAGGGTTGC-AGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * **
12668601 GCTCGGGCATGCGCTGGTGCCACATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCGTAGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
12668666 AACCTGACCGGCGGCATCGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG-GCTCATGATGTG
130 AACCTTAACGGCGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTG
* * *
12668730 TGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
* * *
12668795 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAAT
259 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
* * * * *
12668860 AGGGACAGTTTTTTCAAATAGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTAAATTTTTTT-
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTG
* * * *
12668924 TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
12668989 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCTAAAATCTTAAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
** *
12669054 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCCTGAATTTACAAGCCATAAAAATGGCT
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12669119 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * ** *
12669184 CATCCCGTCTCTCTAGCCGGTGTAGTGCC-GCCTGCACGCCCGCTCATTTAATCGGTTGGCTTAT
648 CATCCCGTCTCTCT-GGCGGCGTAGAGCCTGCCCGC-CG-CCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * *
12669248 GCATATGGAACTCATTCCCAGTCTAAGATT-G-GAG-CTGAGGGTTGTGGTAGCAAGATTGGCAG
710 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGACTGAGGGTTGCGGTAGCAGGATCGGCAG
* ** *
12669310 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCC
775 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCTACTGAGCGCC
* *
12669375 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
* * * * *
12669429 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
12669494 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCATCGGAGCATTGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
12669559 ACC-TAACCGGTGGCATTGGGGTTTCGGCGATCGGGGGGCCGGAGAGGGTGTGCGCACATGATGT
131 ACCTTAA-CGGCGGCATTGGGGTTCCGACGATCGGGGGG-CGG-GGGGGTGTGCGCACATGATGT
* *
12669623 GCGATGGGTGCTGGTACTTGGCCATTATATTGGACCCCTATCCCTCATCAAACC-GTGAGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTG-GAGAACTC
* * * *
12669687 ATAACCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 A-CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
* *
12669752 ATGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTTGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTT
* * * * * * *
12669816 TGTGCATGCCAA-AAAAATACAAAGATCATGTCTACCATGTTTGGGGCCAAAAATCATTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
12669880 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12669945 TTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12670010 CATTGGCACGTAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATTGATCCATGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
12670075 CGCATCCCGTCTCTTTGGTCGGTGTAGAGCCAGCCCGCCCACCCGTCCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGG-CGGCGTAGAGCCTGCCCG-----CCG-CCGCTCGTTTCGTCGGTTG
* *
12670140 GCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGATCAGACTGAGGGTTGCGGTAGCAGGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CAGACTGAGGGTTGCGGTAGCAGGA
* * * *
12670205 TCGACAGCACGCAGAGGGGGACCTGACCGATCCCCGGATTGCGCATCCCACCCCTCTGGCCTACT
768 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCTACT
*
12670270 GAGCGCCCGCACGCTCGTTTCATGGGTTGAGTTAGGCATAAGGAGTTCATTCCCAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
*
12670331 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
12670395 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGTGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
12670460 ACCTTAACGGCGGCATTGGGGTTCC-AGCGATCGGGGGGACTGGGGGGTGTGTGCGCACATGATG
131 ACCTTAACGGCGGCATTGGGGTTCCGA-CGATCGGGGGG-C-GGGGGG-GTGTGCGCACATGATG
* * *
12670524 TGTGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTC
*
12670589 ACACCCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
12670654 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTT
* * *
12670719 TGTGCATGCCAAAAAAAATACAAGGATCACGGCTAACAAGTTTGGGACCAAAACTCCTTCCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
12670784 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTTGTG
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
12670849 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12670914 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
12670979 CGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCACCCGCTGCCCGCTCATTTCATTGATTGG
646 CGCATCCCGTCTCTCTGG-CGGCGTAGAGCCTG----CCCGCCG-CCGCTCGTTTCGTCGGTTGG
* * * * * ** * *
12671044 CTTAAGCATACAGAGTTCATTCACAGTCTAA-TTTCAAACCAGACCAAGGGTTGAGCTAGCAGGA
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-AGA-CAGACTGAGGGTTGCGGTAGCAGGA
* * * * * **
12671108 TCGGTAGCGCGTAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGG-CTGGT
768 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCT-AC
* * * * *
12671172 TGAGCGCCAGCATGCTCGTTTCCTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
832 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
* * *
12671234 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCTAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * ** *
12671299 CTTGAGCATGTGCTGGTGTTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * * *
12671364 A-CTTGATCGATGGCATTGGGGTTTCGACGATCGGGGCGGCCGGAGGGTGTGCGCACAGGATGTG
131 ACCTT-AACGGCGGCATTGGGGTTCCGACGATCGGGG-GGCGGGGGGGTGTGCGCACATGATGTG
* * *
12671428 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAATTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
*
12671493 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
*
12671558 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTGTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTG
12671623 TGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
12671688 ATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTTGTGTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
12671753 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12671818 TTGGCACGTATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
12671883 CATCCCGTCTCTCTGGCTGGCGT--AG--TGCCCG-C-CCGCTCGTTTCGTCGGTTGGCTTAGGC
648 CATCCCGTCTCTCTGGC-GGCGTAGAGCCTGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * *
12671942 ATACGGAGTTCATTCTGAGTCTAAGATCAGACCAGACTAAGGGTTGCGGTAGCAGGATCGGCAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATTAGA-CAGACTGAGGGTTGCGGTAGCAGGATCGGCAGC
* * *
12672007 ACGCAGAAGGGGACCTGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCTACTGAGCGCCC
776 ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCTACTGAGCGCCC
*
12672072 GCACGCTCGTTTCATGGGTTGAGTTAGGCATAAGGAGTTCATTCCCAGTCTAA
841 GCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
*
12672125 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
12672189 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGTGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
12672254 ACCTTAACGGCGGCATTGGGGTTCC-AGCGATCGGGGGGACTGGGGGGTGTGTGCGCACATGATG
131 ACCTTAACGGCGGCATTGGGGTTCCGA-CGATCGGGGGG-C-GGGGGG-GTGTGCGCACATGATG
* * *
12672318 TGTGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTC
*
12672383 ACACCCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
** * *
12672448 ATATGGATAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTT
* * *
12672513 TGTGCATGCCAAAAAAAATACAAGGATCACGGCTAACAAGTTTGGGACCAAAACTCCTTCCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
12672578 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12672643 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12672708 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
12672773 CGCATCCCGTCTCTCTGGCTGGCGT--AG--TGCCCG-C-CCGCTCGTTTCGTCGGTTGGTTTAG
646 CGCATCCCGTCTCTCTGGC-GGCGTAGAGCCTGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *** * * * *
12672832 GCATACGGAGTTCATTCCGAGTCTAAGATCAGACTGAACTGAAGGTTGCACCAACAAGATTGACA
710 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACAG-ACTGAGGGTTGCGGTAGCAGGATCGGCA
** * * * *
12672897 GCACGTAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCTACCCCTCTGGCC-AGCCGGGCC
774 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCTA-CTGAGCG
* * * * * *
12672961 CCCGCACACTGGTTTCGTGGGTTGACTTTGGCATACGGAATTCATTCCCAGTCTAA
838 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
** * * * *
12673017 GCATATTGAGTTCATTCCCAGTCTAAGATCGGACCAGATCC-AGGGTTCCAACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGA-CCGAGGGTTGCGACAGCACATGCTGG
*
12673081 GCTC-AGGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATCGCCGG
65 GCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGG
* * * *
12673144 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTGGCGGGGGGGGGATGCGCACATGA
128 AGAACCTTAACGGCGGCATTGGGGTTCCGACGATC-GGGG-GGCGGGGGGGTG-TGCGCACATGA
* * * **
12673209 TGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCTTATCCTTCATCAAACCTTAAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAAC
* * *
12673274 TCA-ACGCCCTTAAAGAGCATTTGAGATTTTACAGGTATGCTTCCAGTAGCCATTAAAGTGTATG
255 TCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
* * * *
12673338 GAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTT
319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTT
*
12673403 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
384 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAA
* * * * * *
12673468 AAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCA
449 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
* **
12673533 TCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTAATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
12673598 GGCACTGGCACACAGAACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
579 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
12673663 TGCGCA
644 TGCGCA
12673669 GGATCGACAG
Statistics
Matches: 3804, Mismatches: 378, Indels: 116
0.89 0.09 0.03
Matches are distributed among these distances:
889 3 0.00
890 110 0.03
891 228 0.06
892 1185 0.31
893 481 0.13
894 180 0.05
895 3 0.00
898 50 0.01
899 2 0.00
900 1 0.00
901 126 0.03
902 807 0.21
903 259 0.07
904 362 0.10
905 3 0.00
908 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTTAACGGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACAC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCGGCGTAGAGCCTGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATTAGACAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCTACTGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
Done.