Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 65 of 131
Found at i:12671237 original size:26 final size:26
Alignment explanation
Indices: 12671208--12671260 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12671198 GTTGACTTAG
12671208 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12671234 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12671260 G
1 G
12671261 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12672129 original size:26 final size:26
Alignment explanation
Indices: 12672099--12672151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12672089 GTTGAGTTAG
12672099 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
12672125 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12672151 G
1 G
12672152 ATTGGATGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12673823 original size:25 final size:26
Alignment explanation
Indices: 12673775--12673823 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12673765 AACTTAGGCA
12673775 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
12673801 TACGGAGTTCATT-CCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12673824 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:12675706 original size:899 final size:891
Alignment explanation
Indices: 12673666--12676024 Score: 3221
Period size: 899 Copynumber: 2.6 Consensus size: 891
12673656 CACGGCTTGC
* **
12673666 GCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTACCCCTCTGG
1 GCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGG
* * * ** * *
12673731 CCGACTGAGAGCCCACACGCTCATTTTATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCT
66 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
* * * * *
12673796 AAGCTTACGGAGTTCATT-CCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCACATGCTA
131 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC-GACCGAGGGTTGCGGCAGCACATGCTG
* * * *
12673860 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGAAACATGACCAGA
195 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG-GAGA--ACCAGA
* * *
12673925 GAACCTGACCGACGGCATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAGGT
257 G----TG---G-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
12673990 GCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCA
314 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
*
12674055 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCT-AAA
379 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12674119 TGGGGACACTTTTTTCAAATGGTCACAATATCTTGTACACTAT-GATTTTTTAGCTGAATATTTT
444 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGTTTTTAGCTGAAT-TTTT
* *
12674183 TTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAA
507 TGTGCATGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAA
* * *
12674248 AAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTC
572 AAAATTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
12674313 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
637 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12674378 CACTGGCGCACAGAAATATGAAAGACGTGCCTAAACCCACCTACCACCCTATCGATCTATAGCTT
702 CACTGGCACACAAAAATATGAAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
* * ** * * * * * *
12674443 GCGCATCCCGTCTCTGTGGCCGGCATAGTGCCTACCTGCCCGCCCGTCTGCTCATTTCGTTAGTT
767 GCGCATCCCGCCTCTCTAACCGGCATAGTGCCCACCCGCCCACCCGTCCGCTCATTTCATCAGTT
*
12674508 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACA
832 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACA
* * * * *
12674568 GCAAGATCGATAGCACGTAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCCCGCCCCTCTTG
1 GCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGG
*
12674633 CCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
66 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
* *
12674698 AAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGTACCGAGGGTTGTGGCAGCACATGTT
131 AAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCG-ACCGAGGGTTGCGGCAGCACATGCT
* *
12674762 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-TCCTGGGCACCATCGCCGGAGAACCAGAG
194 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGCCGGAGAACCAGAG
*
12674826 TGGCGGCATTGGGGTTCC-AGTGATCGGGGGGGCCGGGGGTGGGTGTGCGCACATGATGTGCGAT
258 TGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC--GGG-GGGTGTGCGCACATGATGTGCGAT
*
12674890 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTTAGAACTCACACCC
319 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCC
* * *
12674955 CCTGAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
384 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
12675020 ACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATGTTTTTGCGCA
449 ACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAAT-TTTTTGTGCA
* *
12675085 TGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATT
513 TGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAAATT
* ** *
12675150 TAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGC
578 TAAAAAATCCT-GAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
12675214 ATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
642 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTG
** * * *
12675279 GCACGTAAAAATGTG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
707 GCACACAAAAATATGAAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
* * * * *
12675343 TCCTGCCTCTCTAATCGGCGTAGTGCCCGCCCGCCCACCCGTCCGCCCACTCATTTCATCGGTTG
772 TCCCGCCTCTCTAACCGGCATAGTGCCCACCCGCCCACCCGTCCG----CTCATTTCATCAGTTG
* * * **
12675408 GCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGATCGAGGGTTGCGGTA
833 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACA
* * * * * * *
12675467 GTAGGATCGACAGCATGTAAAAGGGGACCCGATAGATCCCCGACTTGCGCATCCCGCCCCTCTGG
1 GCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGG
* *
12675532 CC-AGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTGAGGCATATGGAGTTCATTCCCAGTC
66 CCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
* * *
12675596 TAAGCATACGAATTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCT
130 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC-GACCGAGGGTTGCGGCAGCACATGCT
* *
12675661 GGGCAT-GGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCACCGTCAGAGCATCGTCG
194 GGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G---C--CG
* ** * ** * * *
12675725 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAAGGGGACCGAGGGGTGTGCACACATGAT
247 GAGAACCAGAGTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
12675790 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACT
312 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACT
12675855 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
377 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
12675920 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTT
442 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTT
12675985 TGGTGCATGCCAA-AAAAATA-AAAGGATCATGTCTACCAAG
507 T-GTGCATGCCAACAAAAATACAAA-GATCATGTCTACCAAG
12676025 GAGTTCATTC
Statistics
Matches: 1291, Mismatches: 132, Indels: 64
0.87 0.09 0.04
Matches are distributed among these distances:
891 1 0.00
892 26 0.02
893 1 0.00
894 3 0.00
895 218 0.17
896 255 0.20
898 1 0.00
899 273 0.21
900 11 0.01
902 135 0.10
903 85 0.07
905 4 0.00
906 27 0.02
907 210 0.16
908 3 0.00
910 37 0.03
911 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGG
CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
AAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCAGAGTGG
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACA
AAAATACAAAGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAAATTTAAAAAAT
CCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAAA
AATATGAAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTC
TCTAACCGGCATAGTGCCCACCCGCCCACCCGTCCGCTCATTTCATCAGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACA
Found at i:12676395 original size:409 final size:411
Alignment explanation
Indices: 12675609--12676433 Score: 1237
Period size: 409 Copynumber: 2.0 Consensus size: 411
12675599 GCATACGAAT
* ** * * *
12675609 TTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCATGGGCATG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTAGGCATGAGCATG
* ** **
12675674 TGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCACCGTCAGAGCATCGTCGGAGAACCTGACCGA
66 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCACCACCAGAGCATCGTCGGAGAACCTGACCGA
*
12675739 CGGCATTGGGGTTCCGACGATCAAGGGGACCGAGGGGTGTGCACACATGATGTGCGATGGGTGCT
131 CGGCATTGGGGTTCCGACGAT------G--CGAGGGGTGTACACACATGATGTGCGATGGGTGCT
*
12675804 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAA
188 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
12675869 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTT
253 GAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATCTT
*
12675934 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTGGTGCATGCCAA-
318 TTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTT-GTGCATGCCAAC
*
12675998 AAAAATAAAAGGATCATGTCTACCAAGGAG
382 AAAAATAAAAGGATCACGTCTACCAAGGAG
*
12676028 TTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCAGCAGCACATGCTAGGC-TCGAGCAT
1 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTAGGCAT-GAGCAT
* * *
12676092 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACTTGACCG
65 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCACCACCAGAGCATCGTCGGAGAACCTGACCG
* * *
12676157 GCTGCATTGGGGTTCCGACGAT-CG-GGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTT
130 ACGGCATTGGGGTTCCGACGATGCGAGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTT
* *
12676220 GGCCCTTATATTGGGCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
195 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
12676285 TCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTAAAA
260 TCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATCTTTTTAAAA
* * *
12676349 TGGTCACAAAATCTTGTACACTTTGAGTTTTTATCTGAATTTTTTTGTGCATGCCAACAAAAATA
325 TGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATA
*
12676414 GAAGGATCACGTCTACCAAG
389 AAAGGATCACGTCTACCAAG
12676434 TTTGGGGCAA
Statistics
Matches: 372, Mismatches: 31, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
408 55 0.15
409 182 0.49
410 2 0.01
418 1 0.00
419 132 0.35
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (411 bp):
TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTAGGCATGAGCATG
TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCACCACCAGAGCATCGTCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATGCGAGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
CAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATCTTTTTAAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTGTGCATGCCAACAAAAATAAA
AGGATCACGTCTACCAAGGAG
Found at i:12676920 original size:26 final size:26
Alignment explanation
Indices: 12676876--12676928 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12676866 GTTGACTTAG
12676876 GCATACGAAGTCCACTCCCAGTCTAA
1 GCATACGAAGTCCACTCCCAGTCTAA
* * *
12676902 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTCCACTCCCAGTCTAA
12676928 G
1 G
12676929 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTCCACTCCCAGTCTAA
Found at i:12678685 original size:26 final size:26
Alignment explanation
Indices: 12678649--12678699 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12678639 TGGCTGAGGA
*
12678649 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
12678675 ATACGAAGTTCATTCCTAGTGTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
12678700 TTCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:12680798 original size:26 final size:26
Alignment explanation
Indices: 12680762--12680814 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12680752 GTTGACTTAG
*
12680762 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
12680788 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
12680814 G
1 G
12680815 ATCGGACAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:12681695 original size:26 final size:26
Alignment explanation
Indices: 12681665--12681717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12681655 TTTGACTTAG
12681665 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12681691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12681717 G
1 G
12681718 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12682194 original size:904 final size:896
Alignment explanation
Indices: 12680154--12682428 Score: 3289
Period size: 904 Copynumber: 2.5 Consensus size: 896
12680144 GGAGTTCATT
* * *
12680154 CCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAGTATCTAAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGG
12680219 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTGTA
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTTGTA
* * * *
12680284 CATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTCCTTCTGAAAAAAT
130 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
12680349 TTTAAAAAAT-CTCAAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
195 TTTAAAAAATCCT-AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
* *
12680413 CCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAGAAAAATGGCAT
259 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
12680478 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGC
324 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12680543 ATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCAGA
389 ATCCCGTCTCTCTGGCAGACGGAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAGA
* * *
12680608 CGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCAAGGGTTACGATAGCAGGATCGGCAGCACA
454 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAGGATCGGCAGCACA
* * * * ** * *
12680673 CTGAGGGGGACCCGATCGATCCGCTGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCTCG
519 CAGAGGGGGACCCGATCGATCCGCCGCTTATGAATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* *
12680738 CGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
584 CACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* * *
12680803 TCCAAGTCTAAGATCGGACAGAACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATATGCTG
649 TCCAAGTCTAAGATCGGACAGAACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATATGCTG
*
12680868 GTGCCACATTTTTCTTTACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCA
714 GTGCCACATTTTTCTTTACCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGACGGCA
*
12680933 TTGGGGTTCCGACGATCGGGCGGGCCGGGGGGGTGTGCGCACATAATGTGAGGTGGGTGCTGGTA
779 TTGGGGTTCCGACGATCGGGCGGGCCGGGGGGGTGTGCGCACATAATGTGAGATGGGTGCTGGTA
* * *
12680998 CTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCACACC
844 CTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* * *
12681051 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTAAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGG
* * * *
12681116 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTAC
* *
12681181 ATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
131 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * ** * *
12681246 TTACAAAATCCCAAATCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
196 TTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
12681311 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
261 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
12681376 GCATGCAGAAATATGAAGGTGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTT
326 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
12681441 CCCGTCTCTCTGGCTAG-CGGAGTGCCCGCCTACCCGCCCGCCCACTTGTTTCGTCGGTTGGCTT
391 CCCGTCTCTCTGGC-AGACGGAGTGCCCG----CCCGCCCG----CTCGTTTCATCGGTTGGCTT
* * * * * * *
12681505 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGC-AGTAGTAGGATTG
447 AGGCAGACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGA-TAGCAGGATCG
* * *
12681569 GCAGCACACAGA-GGGGACCCGATCGATCC-CCGACTTATGAATCCTGCCCCTCTGGTCGGTTGA
511 GCAGCACACAGAGGGGGACCCGATCGATCCGCCG-CTTATGAATCCCGCCCCTCTGGCCGGCTGA
*
12681632 GCACCCGCACACTCGTTTCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
575 GCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
* *
12681697 GGAGTTCATTCCCAGTCTAAGATCGGACTAG-ACCGAGGGTTGCGACAGCACATGCTAGGCTCGG
640 AGAGTTCATTCCAAGTCTAAGATCGGAC-AGAACCGAGGGTTGCGACAGCACATGCTAGGCTCGG
* * ** *
12681761 GCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCG-CTGTAGCATCACC-GAAGAACC
704 GCATATGCTGGTGCCACATTTTTCTTTACCGGGGCACCATCGTC-GGAGCATCACCAG-AGAACC
* * * * * * * *
12681824 TGACCGGCGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTTCGCATATGATGTGCG
767 TGACCGACGGCATTGGGGTTCCGACGATCGGGCGGGCC-GGGGGGGTGTGCGCACATAATGTGAG
*
12681889 ATGGGTGCTGGTACTTGGCCCGTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACAC
831 ATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
12681954 C
896 C
*
12681955 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGG
* *
12682020 GACAC-TTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGATTTTTTTTGCAC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTAC
* *
12682084 ATGCCAAAAAAAAATACAAGGATCACGTCTACCATGTTCGGGGCCAAAACTCCTTCCGAAAAAAT
131 ATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
12682149 TTTAAAAAATCCTAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
195 TTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
* * *
12682214 CATGAAACTTCATGTGAAGGCTTATGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATT
260 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * **
12682279 GGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCATCCGATCGATCCCCGGCTTATGCA
325 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * * * * *
12682344 TCCCGTCCCTCTGGC---CGGA-TGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAC
390 TCCCGTCTCTCTGGCAGACGGAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAGAC
12682405 GGAGTTCATTCCCAGTCTAAGATC
455 GGAGTTCATTCCCAGTCTAAGATC
12682429 GAATCGGATC
Statistics
Matches: 1230, Mismatches: 131, Indels: 39
0.88 0.09 0.03
Matches are distributed among these distances:
892 48 0.04
896 273 0.22
897 112 0.09
900 11 0.01
901 4 0.00
902 4 0.00
903 302 0.25
904 476 0.39
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (896 bp):
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTAC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCAGACGGAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAGACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAGGATCGGCAGCACACA
GAGGGGGACCCGATCGATCCGCCGCTTATGAATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACA
CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
CAAGTCTAAGATCGGACAGAACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATATGCTGGT
GCCACATTTTTCTTTACCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGACGGCATT
GGGGTTCCGACGATCGGGCGGGCCGGGGGGGTGTGCGCACATAATGTGAGATGGGTGCTGGTACT
TGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
Found at i:12683064 original size:706 final size:706
Alignment explanation
Indices: 12681691--12683066 Score: 2073
Period size: 706 Copynumber: 1.9 Consensus size: 706
12681681 CCCAGTCTAA
* ** *
12681691 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTAAGACAGCACATGATAGG
* * *
12681756 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCTGTAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTCTCTTTGTCAGGGCACCATCGCAGTAGCATCACCGAAGA
* * *
12681821 ACCTGACCGGCGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTTCGCATATGATGT
131 ACCTGACCGGCGGTATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
* * * **
12681886 GCGATGGGTGCTGGTACTTGGCCCGTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCA
196 GCGATGGCTGCTAGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
12681951 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
* *
12682016 TGGGGACACTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGATTTTTTTTG
326 TAGGGACACTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGATTTTTTATG
** *
12682081 CACATGCCAAAAAAAAATACAAGGATCACGTCTACCATGTTCGGGGCCAAAACTCCTTCCGAAAA
391 -ACATGCCAAAAAAAAATACAAGGATCACGTCTAAAAAGTTCGGGGCCAAAACTCCTTCCGAAAA
12682146 AATTTTAAAAAATCCTAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCT
455 AATTTTAAAAAATCCTAAACCG-AAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCT
* *
12682211 TGCCATGAAACTTCATGTGAAGGCTTATGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGC
* * *
12682276 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCATCCGATCGATCCCCGGCTTAT
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCGATCGATCCACGGCTTAC
*
12682341 GCATCCCGTCCCTCTGGCCGGATGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAG
649 ACATCCCGTCCCTCTGGCCGGATGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAG
* * ** * *
12682399 GCATACGGAGTTCATTCCCAGTCTAAGATCGAA-TCGGATCGAGGGTTAAGGTAGCACATTATGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-AGACCGAGGGTTAAGACAGCACATGATAG
* * * *
12682463 GCTCGGGCATGTGCTGGTGTCGCATTTCTCTTTGTCAGGGCACCATCGCCAG-AGCTTCATCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTCTCTTTGTCAGGGCACCATCG-CAGTAGCATCACCGAA
* *
12682527 GAACCTGACTGGCGGTATTAGGGTTCCGGCTATC-GGGGGGCC-GGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGTATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGAT
* *
12682590 GTGCGATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATCTCAAGAAC
194 GTGCGATGGCTGCTAGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATC-AAACCTCAAGAAC
* * *
12682655 TCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
*
12682720 AAATAGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTT
323 AAATAGGGACACT-TTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTG-AT-TT
* * * *
12682785 TTTATG-TATGCC-AACAAATATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCC
385 TTTATGACATGCCAAAAAAAAATACAAGGATCACGTCTAAAAAGTTCGGGGCCAAAACTCCTTCC
* *
12682848 GAAAAAATTTTAAAAAATCCTGAACTC-AAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGT
450 GAAAAAATTTTAAAAAATCCTAAAC-CGAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGT
* *
12682912 CATCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAA
* * * * *
12682977 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGG
579 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCGATCGATCCACGG
* * **
12683042 CTTGCACATCCTGTTTCTCTGGCCG
644 CTTACACATCCCGTCCCTCTGGCCG
12683067 ACGTAGTGCC
Statistics
Matches: 600, Mismatches: 61, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
706 240 0.40
707 162 0.27
708 187 0.31
709 4 0.01
710 7 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (706 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTAAGACAGCACATGATAGG
CTCGGGCATGTGCTGGTGCCGCATTTCTCTTTGTCAGGGCACCATCGCAGTAGCATCACCGAAGA
ACCTGACCGGCGGTATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
GCGATGGCTGCTAGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
TAGGGACACTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGATTTTTTATG
ACATGCCAAAAAAAAATACAAGGATCACGTCTAAAAAGTTCGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCTAAACCGAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCGATCGATCCACGGCTTACAC
ATCCCGTCCCTCTGGCCGGATGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAG
Found at i:12683325 original size:26 final size:26
Alignment explanation
Indices: 12683275--12683327 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12683265 GTTGACTTAG
* *
12683275 GCATACAGAGTTCACTCCTAGTCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
* *
12683301 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
12683327 G
1 G
12683328 ATCGAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAATCTAA
Found at i:12684028 original size:901 final size:902
Alignment explanation
Indices: 12682399--12684067 Score: 2563
Period size: 901 Copynumber: 1.9 Consensus size: 902
12682389 GTTGACTTAG
* * * * ** *
12682399 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTAAGGTAGCACATTATGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCAAGGGTTAAGACAGCACATGATGGG
* * * * *
12682464 CTCGGGCATGTGCTGGTGTCGCATTTCTCTTTGTCAGGGCACCATCGCCAGAGCTTCATCGGAGA
66 CTCAGGCATGTGCTAGTGCCGCATTTCTCTTCGTCAGGGCACCATCGCCAGAGCATCATCGGAGA
* * * * * *
12682529 ACCTGACTGGCGGTATTAGGGTTCCGGCTATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACGGGCAGCATTAGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
12682594 GATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATCTCAAGAACTCAC
196 GATGGCTGCTAGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAACCTCAAGAACTCAC
* *
12682659 ACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTCTCTGAAAT
*
12682724 AGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTA
326 AGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTA
* *
12682789 TGTATGCCAACAAATATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12682854 ATTTTAAAAAATCCTGAACTCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCATCTTT
456 ATTTTAAAAAATCCTGAACGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCATCTTT
*
12682919 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
* * *
12682984 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCAC
586 TGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
* * * * *
12683049 ATCCTGTTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCG
651 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCACCCACTCGTTTCATCAGTTGGCG
* * * * **
12683114 TAGGCATACGGAGTTCATTCCTAGTCGAAGATCGGACTGGATCGAGGGTTGCGACAGTAGGATTG
716 TAGGCACACGGAGTTCATTCCCAATCGAAGATCAGACCCGATCGAGGGTTGCGACAGTAGGATTG
12683179 GCAGCACGCAGAGGGGACCCGGCTGATCCTCGGCTTGCGAATCCCGCCCCTCTGGCCGGTTGAGC
781 GCAGCACGCAGAGGGGACCCGGCTGATCCTCGGCTTGCGAATCCCGCCCCTCTGGCCGGTTGAGC
12683244 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCACTCCTAGTCTAA
846 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCACTCCTAGTCTAA
** *
12683301 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCAAGGGTTAAGACAGCACATGATGGG
* * * *
12683366 CTCAGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCAGGCATGTGCTAGTGCCGCATTTCTCTTCGTCAGGGCACCATCGCCAGAGCATCATCGGAGA
* *
12683431 ACCTGACGGGCAGCATTGGGGTTCCGACGATCAGGGGGCC-GGGGGGTGTGTGCACATGATGTGC
131 ACCTGACGGGCAGCATTAGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * ** *
12683495 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATC-AAACCTTGAGAACTTAC
196 GATGGCTGCTAGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAACCTCAAGAACTCAC
*
12683559 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-TCAGTAGCCATTAAAGTCTCTGAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT-AGTAGCCATTAAAGTCTCTGAAA
* * * *
12683623 TGGGGACACTTTTTTTAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTT
325 TAGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTT
* **
12683688 CTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** *
12683753 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCTGAA-CGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCATCT
* * *
12683818 TGT-CGTGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGA
519 T-TCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGA
*
12683882 CATTGGCATGTAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12683947 CGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCACCCGTCCACCCGCTCGTTTCATCGGTTG
648 CACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCACCCACTCGTTTCATCAGTTG
* *
12684012 GCTTAGGCACACGGAGTTCATTCCCAATCTAAGATCAGACCCGATCGAGGGTTGCG
713 GCGTAGGCACACGGAGTTCATTCCCAATCGAAGATCAGACCCGATCGAGGGTTGCG
12684068 GCAGCACATG
Statistics
Matches: 684, Mismatches: 80, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
899 1 0.00
900 210 0.31
901 328 0.48
902 145 0.21
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCAAGGGTTAAGACAGCACATGATGGG
CTCAGGCATGTGCTAGTGCCGCATTTCTCTTCGTCAGGGCACCATCGCCAGAGCATCATCGGAGA
ACCTGACGGGCAGCATTAGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGCTGCTAGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTCTCTGAAAT
AGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTA
TGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCTGAACGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCATCTTT
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
TGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCACCCACTCGTTTCATCAGTTGGCG
TAGGCACACGGAGTTCATTCCCAATCGAAGATCAGACCCGATCGAGGGTTGCGACAGTAGGATTG
GCAGCACGCAGAGGGGACCCGGCTGATCCTCGGCTTGCGAATCCCGCCCCTCTGGCCGGTTGAGC
GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCACTCCTAGTCTAA
Found at i:12684680 original size:719 final size:717
Alignment explanation
Indices: 12683305--12684769 Score: 2326
Period size: 719 Copynumber: 2.0 Consensus size: 717
12683295 GTCTAAGCAT
* *
12683305 ACGGAGTTCATTCCCAATCTAAGATC-GAATCAGACCAAGGGTTGCGACAGCACATGCTGGGCTC
1 ACGGAGTTCATTCCCAATCTAAGATCAG-ACCAGACCAAGGGTTGCGACAGCACATGCTAGGCTC
* * * * *
12683369 AGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACC
65 AGGCATATGCTAGTGCCCCAATTTCCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACC
* * *
12683434 TGACGGGCAGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATG
130 TGACCGACAGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
12683499 GGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCC
195 GGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
* * *
12683564 TTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTCTCTGAAATGGGGA
260 CTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTCTCTAAAATGGGGA
* * *
12683629 CACTTTTTTTAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTCTGCAT
325 CACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTCTGCAT
*
12683694 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
390 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** * * * *
12683759 AAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCGT
455 AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
12683824 GAAACTTCACGTTAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGACATTGGC
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGC
* * *
12683889 ATGTAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
585 ATGCAGAAATATGAAGAAGTACCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCC
*
12683954 CGTCTCTCTGGCCGTCGTAGTGCCCGCCCACCCGTCC-ACCCGCTCGTTTCATCGGTTGGCTTAG
650 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG-CCTACCCGCTCGTTTCATCGGTTGGCTTAG
12684018 GCAC
714 GCAC
* * * * *
12684022 ACGGAGTTCATTCCCAATCTAAGATCAGACCCGATCGAGGGTTGCGGCAGCACATGCTAGGCTCG
1 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGGCTCA
* *
12684087 GGCATATGCTGGTGCCCCAATTTCCTTCGTCGGGGCACCGTCGTCGGAGCATCA-CTAGAGAACC
66 GGCATATGCTAGTGCCCCAATTTCCTTCGTCGGGGCACCATCGTCGGAGCATCATC-AGAGAACC
* ** *
12684151 TGACCGACGGCATTGGGGTTCCGGTGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGAT
130 TGACCGACAGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
12684216 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* *
12684281 CCTCAAAGAGCATTTGAGATTTTACAGTTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGG
259 CCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTCTCTAAAATGGGG
* *
12684346 ACACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTCTGCA
12684411 TGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
389 TGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
*
12684476 TTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
453 TTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
* *
12684541 ATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTG
*
12684606 GCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCAT
583 GCATGCAGAAATATGAAGAAGTACCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCAT
* ** * * *
12684671 CCCGTCTCTCTGGCCGGCGTAGTGCCCGTCTGCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTA
648 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTACCCGCTCGTTTCATCGGTTGGCTTA
**
12684736 GGCTT
713 GGCAC
*
12684741 A-GGAGTTCATTCCCAATCTCAGATCAGAC
1 ACGGAGTTCATTCCCAATCTAAGATCAGAC
12684770 TGAACTGAGG
Statistics
Matches: 684, Mismatches: 59, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
716 1 0.00
717 135 0.20
718 250 0.37
719 298 0.44
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGGCTCA
GGCATATGCTAGTGCCCCAATTTCCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACCT
GACCGACAGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
TCAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTCTCTAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTCTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCA
TGCAGAAATATGAAGAAGTACCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTACCCGCTCGTTTCATCGGTTGGCTTAGGC
AC
Found at i:12685806 original size:26 final size:26
Alignment explanation
Indices: 12685770--12685847 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
12685760 TTGACTTAGT
12685770 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
12685796 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
* *
12685822 CATACGGAGTTTATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
12685848 ATCAGACTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:12686719 original size:26 final size:26
Alignment explanation
Indices: 12686689--12686741 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12686679 GTTGACTTAG
*
12686689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12686715 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12686741 G
1 G
12686742 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12687691 original size:900 final size:893
Alignment explanation
Indices: 12684022--12687967 Score: 4724
Period size: 900 Copynumber: 4.4 Consensus size: 893
12684012 GCTTAGGCAC
* * * * * *
12684022 ACGGAGTTCATTCCCAATCTAAGATCAGACCCGATCGAGGGTTGCGGCAGCACATGCTAGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * * * * * *
12684087 GGCATATGCTGGTGCCCCAATTTCCTTCGTCGGGGCACCGTCGTCGGAGCATCACTAGAGAACCT
66 GGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCG-C-CAGCATCAC-GGAGAACCT
* ** * *
12684152 GACCGACGGCATTGGGGTTCCGGTGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATG
128 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
12684217 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
12684282 CTCAAAGAGCATTTGAGATTTTACAGTTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
12684347 CACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-TGCAT
12684412 GCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
386 GCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * *
12684477 TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
450 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
12684542 TGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** *
12684607 CATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATC
580 CACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
12684672 CCGTCTCTCTGGCCGGCGTAGTGCCCGTCTGCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAG
645 CCGTCTCTCTGGCCGACGTAGTG-CC--C-GCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAG
* * * * ** * * * *
12684737 GCTTA-GGAGTTCATTCCCAATCTCAGATCAGACTGAACTGAGGGTTGCAGCAACAGGATCGCCA
706 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCAAGGGTTGCGGTAGCAGGATCGACA
* * * * *
12684801 GCACGTAGAGGGGGACCCGGTCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGC
771 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGC
* * *
12684866 CCGCAAGCTCATTT-TGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
835 CCGCACGCTCATTTCAG-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *
12684924 -C-G-G---A---CC-G-----GAT------TGA--GA--GTTACGGTAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * *
12684964 GGCATGTGCTGGTGCTACATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCT
66 GGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCC--AGCATCA-CGGAGAACCT
* *
12685029 GACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGGTCGAGGGGGTGTGCGCACATGATGTACGA
128 GACCGGCGGCATTGGGGTTCCGACGATC--GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGA
* * * * * *
12685094 TGCGTGCTGATACTTAGCCCTTATGTTGGCCCCTTATCCCCCATCAAACCTCGAGAACTCACACC
190 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
12685159 CCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
12685224 TACACTTTCTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-TGC
* * * *
12685289 ATGCAAAAAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAATATT
384 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * ** * *
12685354 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
449 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
12685419 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * * *
12685484 GCATGCAAAAACT-TGAAGATGTGCCTGAACCCACCTACCACGCTATCGATCCACGGCTTGCGCA
579 GCACACAGAAA-TATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
12685548 TCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
643 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGC
** * * * * *
12685613 ATACGGAGTTCATTCCTGGTCTAAGATCCGAC--CAGCAGAGGGTTGCGGTATCAGGATCGGCAG
708 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCA-AGGGTTGCGGTAGCAGGATCGACAG
* * * * * *
12685676 CACGCAAAGGGGGACCTGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCT
772 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCC
** * * *
12685741 CGCAATCTCATTT-TGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAATCTAAGCAT
836 CGCACGCTCATTTCAG-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
*
12685799 ACGGAGTTCATTCCCAATCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGACCGAG
1 ACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C--A---GACCGAG
** **
12685864 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTTTCGTATTTTTCTTC-CCTGGGG---
40 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCC-GGGGCAC
* * * * * *
12685925 C-T--CCATCATCA--AAGAACCTAACCGGCGGTATTGGGGTTCCGACGATGGGGGGGCCAGGGG
104 CATCGCCAGCATCACGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG
*
12685985 GTGTGCGCACATGATGTGCGATGGGTG-TCGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCA
169 GTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
12686049 TCAAACCTCGAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCAGCCAGTCG
233 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
12686114 CCATGAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGCCACAAAATCTTGTACACTTCGAGT
298 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
* *
12686179 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAATACAAGGATCATGTCTACCATGTTTGGG
363 TTTTAGCTGAATTTTTTT-TGCATGCC--AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * ** *
12686244 GCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACAAC-AAAAAAGTTTTGAAAATCTTG
425 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC-AA-ACCGTAAAAAGTTTCAAAAATCGTG
12686308 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
488 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** * * *
12686373 ATTTACAAGCCATAGAAATGGCATTGGCACATGGAAATACGAAGATGTCCCTAAGCCCACCTACC
553 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACC
* * * **
12686438 ACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGTCGACGTAGTGCCCATCCGCCCGTTC
618 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C
* * * *
12686503 GTCCGCTCGTTTCGT-TGGTTGGCTTAGGCACACGAAGTTCATTCCCAGTCTAAGATCGGACCAA
681 --CCGCTCGTTTCGTCT-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAA
** * * * * * * * **
12686567 ACTGAGGGTTGCGATAGCAGGATCGACAGCACACAAAAGGGGACCCGACCAATCCTCGATTTGCG
743 ACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
* * * *
12686632 CATCCCGTCCCTCTGGCCGGTTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGG
808 CATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCATTTCAGGGGTTGACTTAGGCATACGG
12686697 AGTTCATTCCCAGTCTAAGCAT
872 AGTTCATTCCCAGTCTAAGCAT
* * ** * ** * *
12686719 ACGGAGTTCATTCCTAATCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCACATGTTGGGCTTG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * *
12686784 GGCATGTGCTGCTGCCATATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCACCGGAGAACCT
66 GGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCC--AGCATCA-CGGAGAACCT
* * * *
12686849 GATCGACAGCATT-GGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGAT
128 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
* * *
12686913 TGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCC
191 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
12686978 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTAAAATGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
12687043 ACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCAAGTTTTTAGCTGAATTTTTTTTAGCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTT-GCA
*
12687108 TGCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAAATT
385 TG-CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * *
12687173 TGAAAAAATCTCAAACCGTAAAAACTTTCAAAAATCATGAAAAATCGAAAACGAGTCGTCTTGCT
449 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
12687238 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
12687303 GAACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAT
579 GCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
**
12687368 CCCGTCTCTCTGGCCGACGTAGTGCCCGCAAGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCA
644 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCA
* * ** * *
12687433 TACTGAGTTCATTCCCAGTCTAAGATCAGACTGAACCAAGGGTTGCGGCGGCAGGATTGGCAGCA
709 TACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCAAGGGTTGCGGTAGCAGGATCGACAGCA
* * * *
12687498 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCACCTCCCACCCCTCTGGCCAGCTGAGCGCCTG
774 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCG
*
12687563 CACGCTCGTTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
838 CACGCTCATTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
** * * * *
12687619 ACAAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATACTGGGGTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * ** * * * * *
12687684 AGCATGTGCTGTTGCTGCATTTTTGTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
66 GGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCG-C-CAGCATC-ACGGAGAACCT
* * * * *
12687749 GACCGGCAGCATTGAGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATG
128 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
12687814 GGTGTTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTTACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
12687879 CTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
12687944 CACTTTTTTCAAATGGTCAGAAAA
322 CACTTTTTTCAAATGGTCACAAAA
12687968 ATACAAGGAT
Statistics
Matches: 2623, Mismatches: 322, Indels: 200
0.83 0.10 0.06
Matches are distributed among these distances:
873 1 0.00
874 166 0.06
875 26 0.01
876 2 0.00
877 101 0.04
878 271 0.10
879 210 0.08
881 3 0.00
884 2 0.00
887 3 0.00
890 1 0.00
891 2 0.00
893 2 0.00
894 56 0.02
895 2 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 1 0.00
900 464 0.18
901 22 0.01
902 7 0.00
903 2 0.00
904 205 0.08
905 90 0.03
906 203 0.08
907 4 0.00
911 1 0.00
912 205 0.08
913 7 0.00
914 68 0.03
915 223 0.09
916 3 0.00
917 2 0.00
918 7 0.00
919 54 0.02
920 145 0.06
921 2 0.00
922 3 0.00
923 1 0.00
924 2 0.00
925 1 0.00
926 50 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGCATCACGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACTAAACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAG
GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCA
TTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
Found at i:12689368 original size:26 final size:26
Alignment explanation
Indices: 12689338--12689390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12689328 GTTGACTTAG
12689338 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
12689364 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
12689390 G
1 G
12689391 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:12689747 original size:887 final size:893
Alignment explanation
Indices: 12687964--12690093 Score: 2966
Period size: 886 Copynumber: 2.4 Consensus size: 893
12687954 AAATGGTCAG
* * *
12687964 AAAAATACAAGGATCACGTC-ATCCAAGTTGGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
1 AAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAG
** * *
12688028 AT-CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
65 ATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAA
*
12688092 CTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
129 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
*
12688157 AGAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
194 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
12688222 TCTCTGGTCGATGTA--G-T-GCCCGCTCGCCTGCCCGCTCATTTCGTTGGTTGGCTTAGGCATA
259 TCTCTGGCCGATGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * *
12688283 CGGAGTTCATTCCCAGTCTAAAATTGCTCCAAACCAAGGGTTGCGGCGGCAGGATCGACAGCACG
324 CGGAGTTCATTCCCAGTCTAAGATTGATCCAAACCAAGGGTTGCGGCAGCAGGATCGACAGCACG
** * * * *
12688348 CAGAGAGGGACCCGACCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTA
389 CAGAGAGGGACCCGACCGATCCCCAGCTTACACATCCCGCCCCTCTGGCCGACTGAGAGCCCGCA
* * * *
12688413 CGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTAATTCCCAGTCTAACCATACGGAGTTCAT
454 CGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTAATTCCCAGTCTAACCATACAGAGTTCAT
* * * * * * **
12688478 TCCCATTCTAAGATCGGACTAGACCGAGAGTTGGGCAGCACATGCTGGGCTCGAGCATGTGCTGG
519 TCCCAGTCTAAGATCAGACGAGACCGAGAGTTCGACAACACA--CTGGAATCGAGCATGTGCTGG
* * *
12688543 TGCCACATTTTTCTTCTCCGGGGCACCATCGTCAGAGCGTCGTCGGAGAACCTGACCGGCGGCAT
582 TGCCACATTTTTCTACGCCGGGG--CCATCG-CA-A--GTCGTCGGAGAACCTGACCAGCGGCAT
**
12688608 TGGGGAACCAACGATCGGGGGGCCGGGGGGCGTGGGCACATGATGTGCGATGGGTGCTGGTACTT
641 TGGGGAACCAACGATCGGGGGGCCGGGGGGCGTACGCACATGATGTGCGATGGGTGCTGGTACTT
* *
12688673 GGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGGAGCATT
706 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* * * *
12688738 TGATATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACTGGGGACACTTTTTTCAAA
771 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
12688803 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTATTTTATGCATGCCAAC
836 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTATTTTATGCATGCCAAC
* * * *
12688861 AAAAATACAAGGATCATGTCTACCAAGTTTGGAGCAAAAACTCCTTCCGAAAAAATTTTACAAGA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAGA
*
12688926 TCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
66 TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
* * *
12688991 TCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGTCATGAAAATGGCATTGGCACGCAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * * * *
12689056 AAATATGAAGATGTACGTAAACCCACCTATCACCCTGTCGATCCACGGCTTGTGCATCCCATCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * * *
12689121 TCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACA
261 TCTGGCCGATGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
** * * * *
12689186 GAGTTTGTTCCCTGTCTAAGATTGGAT-CAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGT
326 GAGTTCATTCCCAGTCTAAGATT-GATCCAAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * *
12689250 AGAGTGGGACCC-AGCCGATCCCCAGCTTACGCATCCCGCCTCTCTGGCCGATTGAGAGCCCGCA
390 AGAGAGGGACCCGA-CCGATCCCCAGCTTACACATCCCGCCCCTCTGGCCGACTGAGAGCCCGCA
* * *
12689314 CGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
454 CGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTAATTCCCAGTCTAACCATACAGAGTTCAT
* *
12689379 TCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTACGACAACACA-TGGAATCGGGCATGTG-TCG
519 TCCCAGTCTAAGATCAGA-CGAGACCGAGAGTT-CGACAACACACTGGAATCGAGCATGTGCT-G
* *
12689441 GTGCCGCTTTTTTCTACGCCGGGG-CA-C-C-A-TCGTCGGAGAACCTGACCAGCGGCATTGGGG
581 GTGCCACATTTTTCTACGCCGGGGCCATCGCAAGTCGTCGGAGAACCTGACCAGCGGCATTGGGG
** * * * * *
12689501 TTCCGATGATCGGGGGG-CTGGGGGTGTACGCACATGATGTGCGATGGGTGGTGGTACTTGGCCC
646 AACCAACGATCGGGGGGCCGGGGGGCGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
12689565 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGGGA
711 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
12689630 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
776 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
12689695 ACAAAATCTTGTACACTTCGAGTTTTTATCTGAATT-TTTTGGTGCATGCCAAC
841 ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTATTTT-ATGCATGCCAAC
* *
12689748 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-CAAAAAGTTTAAAAGA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAGA
** * * *
12689812 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCATATTGCCATGAAACT
66 TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
* ** * * *
12689877 TCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACGTGCCATAAAAATGGCATTGGAATGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
12689942 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
12690007 TCTGGCCGATGTAGTGCCCGCCTGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATG
261 TCTGGCCGATGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
12690072 GAGTTCATTCCCAGTCTAAGAT
326 GAGTTCATTCCCAGTCTAAGAT
12690094 CAAACCGAAA
Statistics
Matches: 1086, Mismatches: 135, Indels: 35
0.86 0.11 0.03
Matches are distributed among these distances:
886 264 0.24
887 254 0.23
888 43 0.04
891 1 0.00
893 1 0.00
895 1 0.00
896 2 0.00
897 242 0.22
898 4 0.00
899 35 0.03
900 2 0.00
901 226 0.21
902 11 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (893 bp):
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAGA
TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGATGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATTGATCCAAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GAGAGGGACCCGACCGATCCCCAGCTTACACATCCCGCCCCTCTGGCCGACTGAGAGCCCGCACG
CTCATTTCATGGGTTGACTTAGGCATACAAAGTTAATTCCCAGTCTAACCATACAGAGTTCATTC
CCAGTCTAAGATCAGACGAGACCGAGAGTTCGACAACACACTGGAATCGAGCATGTGCTGGTGCC
ACATTTTTCTACGCCGGGGCCATCGCAAGTCGTCGGAGAACCTGACCAGCGGCATTGGGGAACCA
ACGATCGGGGGGCCGGGGGGCGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCAAGTTTTTAGCTGAATTATTTTATGCATGCCAAC
Found at i:12690903 original size:760 final size:751
Alignment explanation
Indices: 12689461--12690909 Score: 2206
Period size: 760 Copynumber: 1.9 Consensus size: 751
12689451 TTTCTACGCC
* *
12689461 GGGGCACCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGATGATCGGGGGGCTGGGGGT
1 GGGGCACCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCAGA-GATCGGGGGGCGGGGGGT
*
12689526 GTACGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
65 GTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
12689591 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTACCAGTAGCCA
130 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCA
*
12689656 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
195 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTCTT
* ** *
12689721 TATCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
260 TAGCTGAATTTTTTGAAGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
* * *
12689786 AACTCCTTCCCAAAAAGTTTAAAAGATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
325 AAATCCTTCCCAAAAAGTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAG
* * * * **
12689851 AAAACGAGCCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACGT
390 AAAACGAGCCATATTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAGGAATTTACAA
* ** *
12689916 GCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
455 GCCATAAAAATGGCACTGGAATACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATC
* *
12689981 GATCCACGGCTTACACATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCGCTCGCCCGCTC
520 GATCCACGGCTTACACATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGACCGCTCGCCCGCTC
* *
12690046 GTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGAAATGAGGGT
585 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAAACGAGGGT
* * **
12690111 ATCAGTAGCAGGATCGGCAGCACGTTGAGGGGGACCCGATTGATGCACGCACGACAGTAGTTCCT
650 ATCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATTGATGCACGCACGACAGTAGTTCCT
12690176 AGGCTCGGGCATGTGCTGTGTCGTATTTTTGTTCGCT
715 AGGCTCGGGCATGTGCTGTGTCGTATTTTTGTTCGCT
* *
12690213 GGGGCACCATCGTCGGAGAAGCTGACCGGCGGCATTGGGGTTCTAGCA-ATCGGGGGGAACGCCC
1 GGGGCACCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTC-AG-AGATC-GGGGG---G--C
*
12690277 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
58 GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
12690342 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-AGTTTTACAGGTTTACTGCC
123 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTACTACC
*
12690406 AGTAGCCATTAAAGTGTCTGAAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
187 AGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12690471 TCGAGTCTTTAGCTGATTTTTTTTAAGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
251 TCGAGTCTTTAGCTGAATTTTTTGAAGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * * * *
12690536 TGGGGCCAAAAATCTTTCCGAGAAAATTTTAAAAAATCCCAAACTATAAAAAGTTTCAAAAATTG
316 TGGGGCCAAAAATCCTTCCCA-AAAAGTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCG
* * *
12690601 TGAAAATTAGAAAACGAGTCATCTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAG
380 TGAAAAATAGAAAACGAGCCATATTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAG
*
12690666 GAATTTACAAGCCATAAAAATGGCACTGGCATACAGAAATATGAAGATGTGCCTAAACCAACCTA
445 GAATTTACAAGCCATAAAAATGGCACTGGAATACAGAAATATGAAGATGTGCCTAAACCAACCTA
* *
12690731 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGACCGC
510 CCACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGACCGC
* **
12690796 -CAGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
575 TC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
* * * * **
12690860 -AGACCGAGGGT-TGCGGCAGGAAGATCGGTAGCGTGCAGAGGGGGACCCGA
639 GA-AACGAGGGTAT-CAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGA
12690910 CCGATCCCCG
Statistics
Matches: 625, Mismatches: 58, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
752 44 0.07
753 6 0.01
754 1 0.00
756 1 0.00
757 1 0.00
758 142 0.23
759 122 0.20
760 308 0.49
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (751 bp):
GGGGCACCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCAGAGATCGGGGGGCGGGGGGTG
TACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTCTTT
AGCTGAATTTTTTGAAGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAA
AATCCTTCCCAAAAAGTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGA
AAACGAGCCATATTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAGGAATTTACAAG
CCATAAAAATGGCACTGGAATACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
ATCCACGGCTTACACATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGACCGCTCGCCCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAAACGAGGGTA
TCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATTGATGCACGCACGACAGTAGTTCCTA
GGCTCGGGCATGTGCTGTGTCGTATTTTTGTTCGCT
Found at i:12691013 original size:26 final size:26
Alignment explanation
Indices: 12690984--12691034 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12690974 GTTGACTTAG
*
12690984 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
12691010 GCATACTTAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12691035 CAATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12693013 original size:713 final size:704
Alignment explanation
Indices: 12691184--12693865 Score: 2846
Period size: 713 Copynumber: 3.9 Consensus size: 704
12691174 GGGGAACGGA
*
12691184 GGGGGTGTGCGCACATGATGTGCGATGGGCGCTGATACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG-TACTTGGCCCTTATATTGGCCCCCTATCCC
12691249 TCATCAAACCTCGAGAACTCAGAC-CCCCTT-AAGAAGCATTTGAGATTTTACAGGTTTGCTGCC
65 TCATCAAACCTCGAGAACT--GACACCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCC
* * **
12691312 AATAGCCATTAAAGTGTCCGAAA-TGGGAACGCTTTTTTCAAATATTCACAAAATCTTGTACACT
127 AATAGCCATTAAAGTGTCTGAAATTGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
12691376 TCAAGTTTTTAGCTAAATTGTTTTGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTT
191 TCGAGTTTTTAGCT-GATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
* * ** ** * *
12691441 TGGGGCCAAAAATCTTTTTGAAAAAATTTTAAAAAATCTTGAACTGTATAAAGTTTCAAAAATCG
255 TGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCGAACAGTAAAAAGTTTCAAAAATCG
* *
12691506 TGAAAATTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAG
319 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
12691571 GAATTAAGAAGCCATAAAAATGGC-TCTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCT
384 GAATTTACAAGCCATAAAAATGGCAT-TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
12691635 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGGCCGCCCG--CC
448 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCC
* * **
12691698 CGCTTACCCG-C-TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTA
513 CGC-T-CCCGCCGTCGTTTCGTCAGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCG
* * * * *
12691761 GACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTCCGTATTTTTCTTC
576 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTCCGCATTTTTCTTC
*
12691826 ACCGGGGCTCCATCGCCCAAAAACCTGACCAGCAGCATTAGGGTTCCGACGATCAGGGGGGCCG
641 ACCGGGGCTCCATCGCCCAAAAACCTGACCAACAGCATTAGGGTTCCGACGATCAGGGGGGCCG
*
12691890 GGGGGTGTGCGCAC---ATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
12691952 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGCTTTTACAGGTTTGCTGCCAG
65 TCATCAAACCTCGAGAACTGACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAA
* * *
12692017 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTATACACTTCG
129 TAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** **
12692082 AGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATGTAAGGATCATGTCTACCGGGTTTGG
194 AGTTTTTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * *
12692147 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAAAT-GTGA
258 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAATCCCGAACAGTAAAAAGTTTC-AAAAATCGTGA
*
12692211 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
322 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
12692276 TTTACAAGCCATAAAAATGGCATTGGCATGCGGAAATATGGAGATGTGCCTAAACCCACCTACCA
387 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
12692341 CCCTATCGATCCACAGATTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCACCCG
452 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT--CCCG
* * *
12692406 CTCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACTAAGTTCATTCCCAGTCTAAGATCG
515 CT--CCCG-CCG-TCGTTTCGTCAGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCG
* * * *
12692471 GACCAGACCAAGGGTTGCTACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTT
576 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGT-CCGCATTTTTCTT
* * ** * * * * *
12692536 CATCGGGG-TACCATTGCCGGAGAACCTGACCAACGGCATTGGGGTTCTGATGATC-GGGGGGCC
640 CACCGGGGCT-CCATCGCCCAAAAACCTGACCAACAGCATTAGGGTTCCGACGATCAGGGGGGCC
12692599 G
704 G
* * *
12692600 GGGGGTATGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCTCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCC
*
12692665 TCATCAAACCTCGAGAACTGACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAAT
65 TCATCAAACCTCGAGAACTGACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAT
* *
12692730 AGCCATTAAAGTGTCTGAAATTGGGACAATTTTTTCAAATGGCCACAAAATCTTGTACACTTCGA
130 AGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
12692795 GTTTTTAGCTGATCTTTTTTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
195 GTTTTTAGCTGAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
* * * *
12692860 GCCGAAACGCCTTCCGAAAAAATTTTAAAAAGCCCCAAACAGTAAAAAGTTTCAAAAATCGTGAA
259 GCCAAAACTCCTTCCGAAAAAATTTTAAAAA-TCCCGAACAGTAAAAAGTTTCAAAAATCGTGAA
* * *
12692925 AAATAGAAAACAAGTCGTCTTGCTATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
323 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** * * * *
12692990 TTACAAGCCATAAAAGCGGCATTGGCGTGTAGAAATATGAAGATGTGCCTAAACCCACCTACTAT
388 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
12693055 CCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCTG--CCCG-T-
453 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCCCGCTC
* *
12693116 CCGTCCGATCGTTTCGTCCGTTGGCTTAGGCATA-TGGAGTTCATTCCCAGTCTAAGATCGGATC
518 CCG-CCG-TCGTTTCGTCAGTTGGCTTAGGCATACT-GAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * **
12693180 GGACCGAGGGTTGCGGCAGCAGGAT-C-GGTAGCACGCAG-AGGGGGACTCGACCG-ATCCTTGG
580 GGACCGAGGGTTGCGACAGCA-CATGCTGG--GCTCG-AGCA-TGTG-CTGGTCCGCAT--TTTT
* * * * * * ****
12693241 CTT-A-C---GCATCC--CGTCCC-----TCTG-GC--C-G-GTT-GAGTGCCCAC-A-CCCTCG
637 CTTCACCGGGGC-TCCATCG-CCCAAAAACCTGACCAACAGCATTAGGGTTCCGACGATCAGGGG
***
12693286 TTTC-
700 GGCCG
* * * * * * ****
12693290 GTGGGT-T--G-AC-TTA-G-GC-ATACGGAG-T-T-CATT--CCCAGTCTAAGCATAAGGAGTT
1 GGGGGTGTGCGCACATGATGTGCGAT-GGGTGCTGTAC-TTGGCCC--T-T-A-TAT-TGGCCCC
* * ** * * ** ***
12693342 C-ATTCC-CAGTCTAAGATC--GAACCG-GA--CC-----GAG-GGTT-ACGATAGCACA----T
58 CTATCCCTCA-TCAAACCTCGAGAACTGACACCCCTTAAAGAGCATTTGA-GATTTTACAGGTTT
* * *
12693389 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGT
121 GCTGCCAATAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
12693454 ACACTTCGAGTTTTTAGCTGATTGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
186 ACACTTCGAGTTTTTAGCTGATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC
* * * * *
12693519 AAGTTTGGGGACAAAACTCTTTCCAAAAAAATTATAAAAAATCCCGAATC-GTAAAACGTTTCAA
250 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT-TTAAAAATCCCGAA-CAGTAAAAAGTTTCAA
* * * *
12693583 AACTCATGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGTCC
313 AAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
12693648 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
377 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
12693713 CCACCTTCCACCATATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC
442 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
12693778 CG--CCCG--CCCG-C-TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
507 CGCTCCCGCTCCCGCCGTCGTTTCGTCAGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAG
* * *
12693837 ATCAGATCGGACCGAGGGTTGCGCCAGCA
572 ATCGGACCGGACCGAGGGTTGCGACAGCA
12693866 GGATCGACAG
Statistics
Matches: 1709, Mismatches: 213, Indels: 149
0.83 0.10 0.07
Matches are distributed among these distances:
665 71 0.04
667 2 0.00
668 176 0.10
669 185 0.11
671 1 0.00
672 8 0.00
673 3 0.00
678 5 0.00
679 1 0.00
680 5 0.00
681 6 0.00
682 6 0.00
683 17 0.01
684 5 0.00
685 2 0.00
686 2 0.00
689 1 0.00
690 6 0.00
691 3 0.00
692 5 0.00
693 2 0.00
694 1 0.00
695 1 0.00
697 1 0.00
698 3 0.00
701 2 0.00
702 197 0.12
703 239 0.14
704 12 0.01
705 76 0.04
706 33 0.02
707 8 0.00
708 9 0.01
709 4 0.00
710 110 0.06
711 57 0.03
712 188 0.11
713 256 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (704 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTGACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATA
GCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCCCGCTCCCG
CCGTCGTTTCGTCAGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTCCGCATTTTTCTTCACCGGGGCTC
CATCGCCCAAAAACCTGACCAACAGCATTAGGGTTCCGACGATCAGGGGGGCCG
Found at i:12693340 original size:26 final size:26
Alignment explanation
Indices: 12693304--12693356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12693294 GTTGACTTAG
*
12693304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12693330 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12693356 G
1 G
12693357 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12693998 original size:26 final size:26
Alignment explanation
Indices: 12693969--12694021 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12693959 GTTGACTCAG
* *
12693969 GCATACGGTGTTAATTGCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
12693995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
12694021 G
1 G
12694022 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:12694022 original size:665 final size:666
Alignment explanation
Indices: 12692720--12694057 Score: 1934
Period size: 665 Copynumber: 2.0 Consensus size: 666
12692710 TTTACAGGTT
*
12692720 TGCTACCAATAGCCATTAAAGTGTCTGAAATTGGGACAATTTTTTCAAATGGCCACAAAATCTTG
1 TGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGCCACAAAATCTTG
*
12692785 TACACTTCGAGTTTTTAGCTGATCTTTTTTGTGCATGCGAACAAAAATACAAGGATCACGTCTAC
66 TACACTTCGAGTTTTTAGCTGATCTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *
12692850 CAAGTTTGGGGCCGAAACGCCTTCCGAAAAAATTTTAAAAAGCCCCAAACAGTAAAAAGTTTCAA
131 CAAGTTTGGGGACAAAACGCCTTCCAAAAAAATTTAAAAAAGCCCCAAACAGTAAAAAGTTTCAA
* * * *
12692915 AAATCGTGAAAAATAGAAAACAAGTCGTCTTGCTATGCAACTTCACGTGAAGGCTTAAGGGACCA
196 AAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCA
* * *
12692980 TTGTATGAATTTACAAGCCATAAAAGCGGCATTGGCGTGTAGAAATATGAAGATGTGCCTAAACC
261 TTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
12693045 CACCTACTATCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCT
326 CACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCC
* *
12693110 GCCCGTCCGTCCGATCGTTTCGTCCGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
391 GCCCG-CCG-CCGATCGTTTCATCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** ** * *
12693175 GGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACTCGACCGATCCTTG
454 AGATCGGACCGAGGGTTGCGCCAGCAGGATCGACAGCACGCAGAGGGAAACCCGACCGATCCCTG
* * ** * * *
12693240 GCTTACGCATCCCGTCCCTCTGGCCGGTTGAGTGCCCACACCCTCGTTTCGTGGGTTGACTTAGG
519 ACTTACGCATCCCGCCCCTCTGGCCGACTAAGCGCCCACACCCTCGTTTCGTGGGTTGACTCAGG
* *
12693305 CATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCGGACC
584 CATACGGAGTTAATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC
*
12693370 GAGGGTTAC-GATAGCACA
649 GAGGGTTACAG-CAGCACA
* * *
12693388 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTG
1 TGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGCCACAAAATCTTG
12693453 TACACTTCGAGTTTTTAGCTGAT-TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
66 TACACTTCGAGTTTTTAGCTGATCT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * *
12693517 CCAAGTTTGGGGACAAAACTCTTTCCAAAAAAATTATAAAAAATCCCGAATC-GTAAAACGTTTC
130 CCAAGTTTGGGGACAAAACGCCTTCCAAAAAAATT-TAAAAAAGCCCCAAACAGTAAAAAGTTTC
* * *
12693581 AAAACTCATGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGT
194 AAAAATCATG-AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGA
*
12693646 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
258 CCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
12693711 ACCCACCTTCCA-CCATATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGTCGGCGTAGTGCCC
323 ACCCACCTACCATCC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCC
* *
12693775 GCCCGCCCG-C-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
387 GCCCGCCCGCCGCCGATCGTTTCATCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
*
12693838 TCAGATCGGACCGAGGGTTGCGCCAGCAGGATCGACAGCACGCAGAGGGAAACCCGATCGATCCC
452 TCAGATCGGACCGAGGGTTGCGCCAGCAGGATCGACAGCACGCAGAGGGAAACCCGACCGAT-CC
** * * ** ** *
12693903 CT-ACTTGTGCATCCTGCCCCTCTGGTCGACTAAGCGCCTGCATGCTTGTTTCGTGGGTTGACTC
516 CTGACTTACGCATCCCGCCCCTCTGGCCGACTAAGCGCCCACACCCTCGTTTCGTGGGTTGACTC
* * * * *
12693967 AGGCATACGGTGTTAATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG
581 AGGCATACGGAGTTAATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCAG
12694032 ACCGAGGGTTACAGCAGCACA
646 ACCGAGGGTTACAGCAGCACA
12694053 TGCTA
1 TGCTA
12694058 GGCTTACGCA
Statistics
Matches: 594, Mismatches: 70, Indels: 15
0.87 0.10 0.02
Matches are distributed among these distances:
665 229 0.39
666 4 0.01
667 2 0.00
668 173 0.29
669 186 0.31
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (666 bp):
TGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGCCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGATCTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGACAAAACGCCTTCCAAAAAAATTTAAAAAAGCCCCAAACAGTAAAAAGTTTCAA
AAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCC
GCCCGCCGCCGATCGTTTCATCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ATCGGACCGAGGGTTGCGCCAGCAGGATCGACAGCACGCAGAGGGAAACCCGACCGATCCCTGAC
TTACGCATCCCGCCCCTCTGGCCGACTAAGCGCCCACACCCTCGTTTCGTGGGTTGACTCAGGCA
TACGGAGTTAATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGA
GGGTTACAGCAGCACA
Found at i:12694256 original size:26 final size:26
Alignment explanation
Indices: 12694213--12694265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12694203 TACTTAGCCC
* *
12694213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAATCTAA
*
12694239 GCATACGGAGATCGTTCCCAATCTAA
1 GCATACGGAGATCATTCCCAATCTAA
12694265 G
1 G
12694266 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAATCTAA
Found at i:12696028 original size:26 final size:26
Alignment explanation
Indices: 12695992--12696041 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
12695982 TAACTTAGGC
12695992 ATACGGAGTTCATTCCCAGTCTAATT
1 ATACGGAGTTCATTCCCAGTCTAATT
12696018 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
12696042 GATCTGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAATT
Found at i:12696876 original size:899 final size:899
Alignment explanation
Indices: 12694213--12696914 Score: 2866
Period size: 874 Copynumber: 3.0 Consensus size: 899
12694203 TACTTAGCCC
** * * * * *
12694213 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCGTTCCCAATCTAAGATCAGACCAAAC
1 GCATACGGAGTTCATTCCCAGTCTAATTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAC
* ** * * ** *
12694278 CGAGGGTTACGGCAGCACATGCTGGGCTTGGGTATGTGCTGGTGCCGCATTTTTCTTTGTCAGGG
66 CAAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGATGCCGCATTTTTC-TTCACCGGG
** ** * * * * * *
12694343 -CACCATTGCC-AGAGCATCACCA-GAGAACTTGACCGACAGAATTGGGGTTCCGATGATCGGAG
130 ACACCATCACCGA-AGCATC-GTAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * * * * *
12694405 GGGCCG-GGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
193 GGGCCGAGGGGGTGCGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTCATATTGGCACC
* * * *
12694469 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTA
258 CTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTG
* * * * * * * *
12694534 CTTCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATA
323 CTACCAGCAGCCATTAAAGTGTCTAAAATGCGGACACCTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
12694599 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGATCATGTCTACCA
388 CACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * *** * *
12694664 AGTTTGGGGCCAAAAATCCTTTTGAAAAACTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
453 AGTTTCGGGCCAAAACTCCTTCCAAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * * * * *
12694729 ATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATT
518 ATCATGAAAAATAGAAAACGAGCCGACTTGCCATG--A---CACGCGAAGGCTTAAGGGACCAAT
* * * *
12694794 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCA
578 GTACGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * * *** *
12694859 CCTATC-ACCCTATCGATTCACGGCATGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCACCCG
643 CC-AACAACCCTACCGATCCACAGCTTCCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCG
* * * * * **
12694923 ----CCCGCCCGCTTGTTTCATCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
707 CACACCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
** * * * * * ** *
12694984 GACTGGA-TCGAGGGTTGCGGCAGCAAGATC-GCCAGCACACAGAGGGGGACTCGATTGATCCCG
772 GACCAGACTC-AAGGTTGCAGCAGCAAGATCGGGCAG-ACGCAGAGGGGGACCCGACCGATCCCC
* * * * * * ** * * **
12695047 GGCTTGCGCAT-CTAGCCCCTCTCGTCGGCTGAGCGCCTTCACGCTCATTTCGT-G----GGTT-
835 GACTTACGCATCCCA-CCCCTCTAGCCAGCTGAGCGCCCGCACACTCGTTTCGTCGATTAACTTA
12695105 -
899 G
* *
12695105 G---AC--A--T-A-T----G-C-----ATACGAAGTTCATTCTCAGTCTAAGATCAGATCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAATTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAC
* *
12695151 CAAGGGTTACGGTAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGA
66 CAAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGATGCCGCATTTTTCTTCACCGGGA
* * * *
12695216 CACCATCACCGGAGCATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGG
131 CACCATCACCGAAGCATCGTAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
12695281 CCGAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
196 CCGAGGGGGTGCGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTCATATTGGCACCCTA
* ** *
12695346 TCCCTCATCAAACCTTTAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
261 TCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTA
* * *
12695411 CTAGCAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAATGGTCCCAAAATCTTGTACAC
326 CCAGCAGCCATTAAAGTGTCTAAAATGCGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
12695476 TTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCATGTCTACCAAGT
391 TTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
*
12695541 TTCGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
456 TTCGGGCCAAAACTCCTTCCAAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
12695606 ATGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAGGGACCAATGTA
521 ATGAAAAATAGAAAACGAGCCGACTTGCCATG--A---CACGCGAAGGCTTAAGGGACCAATGTA
* *
12695671 TGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGATGATGTGCCTAAACCCACCA
581 CGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCA
* * * * **
12695736 ACCACCCTACCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCTGCTTGCACA
646 ACAACCCTACCGATCCACAGCTTCCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGCACA
* * * *
12695801 CCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGTATATAGAGTTCATTCCCAGTCTAAGATCAGACC
711 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * * * * *
12695866 GGACTGAAGGTTGCAGCAGCAAGATCGTTCAGACGTATAGGGTGACCCGACCGATCCTCGGCTTA
776 AGACTCAAGGTTGCAGCAGCAAGATCGGGCAGACGCAGAGGGGGACCCGACCGATCCCCGACTTA
** * * * * * * *
12695931 CGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGTACACTTGTTTCGTGGGTTAACTTAG
841 CGCATCCCACCCCTCTAGCCAGCTGAGCGCCCGCACACTCGTTTCGTCGATTAACTTAG
* *
12695990 GCATACGGAGTTCATTCCCAGTCTAATTATACGGAGTTCATTCCCAGTCTAAGATCTGACC-AGA
1 GCATACGGAGTTCATTCCCAGTCTAATTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGA-A
* * * ***
12696054 CCGAGGGTTACGGCAGCACCTGCTGGGCT-CGAGCATGTGCTGATGCCGTATTTTTCTTCGTTGG
65 CCAAGGGTTACGGCAGCACATGCTGGGCTCCG-GCATGTGCTGATGCCGCATTTTTCTTCACCGG
* *** * * * * *
12696118 GGCACCATCGTTGAAGCATCGTAGGGGAACCTGACCGGCGGTATTTGTGTTCCGGCGATCGGGGG
129 GACACCATCACCGAAGCATCGTAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* *
12696183 GGCCAGAGGGGGTGCGCGCACGTGATGTGCAATGGGTGCTGGTACTTGGCCCTCATATTGGCACC
194 GGCC-GAGGGGGTGCGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTCATATTGGCACC
*
12696248 CTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
258 CTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTG
* * * *
12696313 CTACCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTTGAAATGGTCACAAAATCTTGT
323 CTACCAGCAGCCATTAAAGTGTCTAAAATGCGGACAC-CTTTTTCAAATGGTCACAAAATCTTGT
* * * *
12696378 ACACTTTGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACC
387 ACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * **
12696443 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTGTAAAAAATCCTGAACTTTAAAAAGTTTCAAA
452 AAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
** * * *
12696508 AATTGTGAAAAATAGAAAACGAGCCGACTTGCCA-G-GACGTGAAGGCTTAAGGGACCATTGTAC
517 AATCATGAAAAATAGAAAACGAGCCGACTTGCCATGACACGCGAAGGCTTAAGGGACCAATGTAC
* * * *
12696571 GAATTTACAAGCCATAGAAATGGCATTGGCACGTAGAAATTTGAAGATGTGCCTAAACCCACCTA
582 GAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAA
* * * * *
12696636 CAACCCTATCGATCCA-TGACTTCCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
647 CAACCCTACCGATCCACAG-CTTCCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGCACA
** * * ** *
12696700 CCCGCTTGCTCGTTTCGTCATTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGCCC
711 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
* * *
12696765 AGAC-CAAGGGTTGCGGTAGCAAGA-CGGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
776 AGACTCAA-GGTTGCAGCAGCAAGATCGGGCAG-ACGCAGAGGGGGACCCGACCGATCCCCGACT
** * * * **
12696828 TGTGTATCCCACCCCTCTAGCCAGCTGTGCGCCCGCACGCTCGTTTCGTCGATTGCCTTAG
839 TACGCATCCCACCCCTCTAGCCAGCTGAGCGCCCGCACACTCGTTTCGTCGATTAACTTAG
12696889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12696915 GATCGGACCG
Statistics
Matches: 1535, Mismatches: 230, Indels: 83
0.83 0.12 0.04
Matches are distributed among these distances:
872 6 0.00
873 136 0.09
874 462 0.30
878 134 0.09
879 8 0.01
883 3 0.00
884 1 0.00
885 2 0.00
887 1 0.00
888 2 0.00
889 2 0.00
890 1 0.00
892 2 0.00
893 1 0.00
894 1 0.00
898 9 0.01
899 303 0.20
903 3 0.00
904 139 0.09
905 149 0.10
906 170 0.11
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAATTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAC
CAAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGATGCCGCATTTTTCTTCACCGGGA
CACCATCACCGAAGCATCGTAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
CCGAGGGGGTGCGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTCATATTGGCACCCTA
TCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTA
CCAGCAGCCATTAAAGTGTCTAAAATGCGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
TTCGGGCCAAAACTCCTTCCAAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGAGCCGACTTGCCATGACACGCGAAGGCTTAAGGGACCAATGTACGAAT
TTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACAAC
CCTACCGATCCACAGCTTCCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGCACACCCGC
CCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
CAAGGTTGCAGCAGCAAGATCGGGCAGACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCAT
CCCACCCCTCTAGCCAGCTGAGCGCCCGCACACTCGTTTCGTCGATTAACTTAG
Found at i:12696996 original size:159 final size:160
Alignment explanation
Indices: 12696698--12697074 Score: 456
Period size: 159 Copynumber: 2.4 Consensus size: 160
12696688 CCCGCCCGCC
** * *
12696698 CGCCCGCTTGCTCGTTTCGTC-ATTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
1 CGCCCGCACGCTCGTTTCGTCGA-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
12696762 CCCAGACCAAGGGTTGCGGTAGCAAGACGGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGAC
65 ACCAGACCAAGGGTTACGGCAGCAAGACGGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGAC
**** *
12696827 TTGTGTATCCCACCCCTCTAGCCAGCTGTG-
130 TTACCCATCCCACCCCTCTAGCCAGCTGAGT
*
12696857 CGCCCGCACGCTCGTTTCGTCGATTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * *
12696922 CCGGATCGAGGGTTACGGCAGCAAGATC-GGCCGCACGCAGAGTGGGACCCGACCGATCCCCGGC
66 CCAGACCAAGGGTTACGGCAGCAAGA-CGGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGAC
* * *
12696986 TTACCCATCCCGCCCCTCTGGCCGGCTGAGT
130 TTACCCATCCCACCCCTCTAGCCAGCTGAGT
* * * * *
12697017 C-CCCGCACGCTTGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCCCGCACGCTCGTTTCGTCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12697075 CATACGGAGT
Statistics
Matches: 187, Mismatches: 28, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
159 184 0.98
160 3 0.02
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.22
Consensus pattern (160 bp):
CGCCCGCACGCTCGTTTCGTCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCAAGGGTTACGGCAGCAAGACGGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACT
TACCCATCCCACCCCTCTAGCCAGCTGAGT
Found at i:12697078 original size:26 final size:26
Alignment explanation
Indices: 12697048--12697100 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12697038 GTTAACTTAG
*
12697048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12697074 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12697100 G
1 G
12697101 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:12697630 original size:26 final size:26
Alignment explanation
Indices: 12697594--12697646 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12697584 GTTGACTTAG
* *
12697594 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
12697620 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
12697646 G
1 G
12697647 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:12698044 original size:546 final size:545
Alignment explanation
Indices: 12696992--12698086 Score: 1561
Period size: 546 Copynumber: 2.0 Consensus size: 545
12696982 CGGCTTACCC
*
12696992 ATCCCGCCCCTCTGGCCGGCTGAGTCCCCGCACGCTTGTTTCATGGGTTAACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGTCCCCGCAC-CTCGTTTCATGGGTTAACTTAGGCATACGGA
* * *
12697057 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTG
65 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGCCTAAGATCAGACCAGACCAAGGGTTG
* ** ** ***
12697122 AGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCCACCATTGT
130 AGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCAC
* * *
12697187 CGAAGTATCATCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACAATCAGGGGGGCCGGAGGGG
195 CGAAGCATCATCGGAGAACCTGACCGGTGGCATTGAGGTTCCGACAATCAGGGCGGCCGGAGGGG
*
12697252 TGCGCGCACATCATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCACATC
260 TGCGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCACATC
12697317 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
325 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
12697382 ATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
390 ATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTT
* **
12697447 TTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTACAGCCAA
455 CTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTACAGAAAA
* *
12697512 AACTCCTTCCGAAAAAATTTTACAAA
520 AACCCCTTCCGAAAAAATTTTAAAAA
* * * * * *
12697538 ATCCCGGCCCTTTGGCCGGCTGAGCGTCCGCGCA-CTCGTTTCGTGGGTTGACTTAGGCATATGG
1 ATCCCGCCCCTCTGGCCGGCTGA--GTCCCCGCACCTCGTTTCATGGGTTAACTTAGGCATACGG
*
12697602 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGTT
64 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGCCTAAGATCAGACCAGACCAAGGGTT
* * * **
12697667 GCGGCAACACATGCTGGGCTC-AGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCATGATC
129 GAGGCAACACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATC
* * * * * * * *
12697731 ACCGGAGCATCGTCGGAGAACTTGATCGGTGGCATTGAGGTTCCGGCGATC-GAGGCGGTCGGGG
193 ACCGAAGCATCATCGGAGAACCTGACCGGTGGCATTGAGGTTCCGACAATCAG-GGCGGCCGGAG
* * * *
12697795 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTGTATATTGGCCCCCTATCCCT
257 GGGTGCGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCT-TATATTGGCCACCTATCCCA
* * *
12697859 CTTCAGACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
321 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
12697924 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGA
386 AGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGA
* * ** * ***
12697989 GTTTCTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATGATGTCTACCATGTTTGGG
451 GTTTCTAGCTGAATTTTTTTATGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTACA
*
12698053 GAAAAAACCCCTTTCGAAAAAATTTTAAAAA
515 GAAAAAACCCCTTCCGAAAAAATTTTAAAAA
12698084 ATC
1 ATC
12698087 TCGAACAGCA
Statistics
Matches: 484, Mismatches: 59, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
545 23 0.05
546 453 0.94
548 8 0.02
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (545 bp):
ATCCCGCCCCTCTGGCCGGCTGAGTCCCCGCACCTCGTTTCATGGGTTAACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGCCTAAGATCAGACCAGACCAAGGGTTGA
GGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCACC
GAAGCATCATCGGAGAACCTGACCGGTGGCATTGAGGTTCCGACAATCAGGGCGGCCGGAGGGGT
GCGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCACATCA
AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGAACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTC
TAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTACAGAAAAA
ACCCCTTCCGAAAAAATTTTAAAAA
Found at i:12700106 original size:26 final size:26
Alignment explanation
Indices: 12700069--12700121 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12700059 GTTGACTTAG
*
12700069 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12700095 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12700121 G
1 G
12700122 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12701140 original size:518 final size:517
Alignment explanation
Indices: 12700282--12701280 Score: 1593
Period size: 518 Copynumber: 1.9 Consensus size: 517
12700272 GTGTGCGCAT
12700282 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGA
* * * *
12700347 GGACTCACTCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 GAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAATGT
* *
12700412 TTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
131 CTGAAATGGGGACAATTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * ** * *
12700477 GTTTTTATGCAAGCCAACAAAAATATGAGGATCACGTTTACCAAGTTTGGGGTCAAAAATCCTTT
196 GTTTTTATCCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT
* ** ** *
12700542 CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGAG
261 CAAAAAAATTTTAAAAAATCAGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAG
* * * *
12700607 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAA
326 TCATCCTGCCATGAAACTTCACGTGAAGACTTAAGGCACCATTGTATGAATTTAAAAGCCATAAA
* *
12700672 AATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
391 AATGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
*
12700737 ACTTGCGCATCCCGTCTCTCTGGCCGGAGTAATGCCCGTCGGCCCGCCCGCCCGTTCGTTTC
456 ACTTGCGCATCCCATCTCTCTGGCCGGAGTAATGCCCGTCGGCCCGCCCGCCCGTTCGTTTC
*
12700799 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGA
*
12700864 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGTCAGTAGCCATTAAAATG
66 GAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAATG
* *
12700929 TCTGAAATGGGGACAATTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
130 TCTGAAATGGGGACAATTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * ** * *
12700994 TTTTTTTGTCCATGCCAAAAAAAATACAAGGTTCACGTCTGTCAAGTTTGGGGCCAAAACTTCTT
195 TGTTTTTATCCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
* *
12701059 TCAAAAAAATTTTAAAAAATCAGGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAATGA
260 TCAAAAAAATTTTAAAAAATCAGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGA
*
12701124 GTCATCCTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTAAAAGCCATAA
325 GTCATCCTGCCATGAAACTTCACGTGAAGACTTAAGGCACCATTGTATGAATTTAAAAGCCATAA
* **
12701189 AAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACTGCCCTATCGATCCAC
390 AAATGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC
*
12701254 GGCTTGCGCATCCCATCTCTCTGGCCG
455 GACTTGCGCATCCCATCTCTCTGGCCG
12701281 AGGTAGTGCA
Statistics
Matches: 437, Mismatches: 44, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
517 71 0.16
518 366 0.84
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (517 bp):
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGA
GAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAATGT
CTGAAATGGGGACAATTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
GTTTTTATCCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT
CAAAAAAATTTTAAAAAATCAGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAG
TCATCCTGCCATGAAACTTCACGTGAAGACTTAAGGCACCATTGTATGAATTTAAAAGCCATAAA
AATGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
ACTTGCGCATCCCATCTCTCTGGCCGGAGTAATGCCCGTCGGCCCGCCCGCCCGTTCGTTTC
Found at i:12702413 original size:26 final size:26
Alignment explanation
Indices: 12702375--12702425 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
12702365 GTTAACTTAG
** *
12702375 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
12702401 GCATACGAAGTTCATTTCCAATCTA
1 GCATACGAAGTTCATTCCCAATCTA
12702426 TGATCGGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12702768 original size:893 final size:890
Alignment explanation
Indices: 12700798--12705803 Score: 5432
Period size: 893 Copynumber: 5.7 Consensus size: 890
12700788 CCGTTCGTTT
*
12700798 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
* * *
12700863 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGTCAGTAGCCATTAAAAT
66 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
12700928 GTCTGAAATGGGGACAATTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
131 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * ** *
12700993 ATTTTTTTGTCCATGCCAAAAAAAATACAAGGTTCACGTCTGTCAAGTTTGGGGCCAAAACTTCT
196 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* ** * *
12701058 T-TCAAAAAAATTTTAAAAAATCAGGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAAT
261 TCT-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * *
12701122 GAGTCATCCTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTAAAAGCCAT
325 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* **
12701187 AAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACTGCCCTATCGATCC
390 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
12701252 ACGGCTTGCGCATCCCATCTCTCTGGCCGAGGTAGT---GCACGCCCG--C--CCGCTCGTTTCG
455 ACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCGACCGCTCATTTCA
* * * * ** * * *
12701310 TCGGTTGGCATAGCCATATGGAGCTCATTC-CAAACCTAAGATCA-AACCGGACCAAGGGTTGCA
520 TCGGTTGGCTTAGGCATACGGAGTTCATTCAC-AGTCTAAGAT-AGGACCGGACCGAGGGTTGCG
* * *
12701373 GCAGCAGGATCTCCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTC
583 GCAGCAGGATCGCCAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTC
** * * *
12701438 TGGGTGACCGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
647 TGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
12701503 TCTAAGCACATGGAGTTCATTCCGAGTCTAAGATCGGATCGGACCG-GGGTTAC-GCA-CACATG
712 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * * **
12701565 CTGGGCTCTGGCA-GT-CT-GTACCCGACATTTTTCTTCATC-GGG-ACCATCGTCGGAGCTCGC
777 CTGGGCTCGGGCATGTGCTGGT-GCCG-CATTTTTCTTCATCGGGGCACCATCGCCGGAG--AAC
* * * * * *
12701625 CGAAGACCTACGGCGGAATT-GGGTTCC-GCGA-TCGGGGGGGTCGGGGGGGGGTGTGCCCA
838 C--TGACCGACGG-TG--TTGGGGTTCCACCGATTC-GGGGGG-C--CGGGGGGTGTGCGCA
*
12701684 -ATGATGTGCGATGGGTTGCTGGTACTTTGG-CCTTATATTGG--CGC-ATCCCTCATCAAACCT
1 CATGATGTGCGATGGG-TGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
12701744 TG-G-ACTCACAACCCCCCTTAAAGAGCATTTGGAGATTTTGCCAGGTTTGCTGCCAGTAGCCAT
64 TGAGAACTCAC-A-CCCCCTTAAAGAGCATTT-GAGATTTT-ACAGGTTTGCTGCCAGTAGCCAT
* * *
12701807 T-AAGTATCTGAAATGGGGACACTTTTGTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTT
125 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * **
12701871 AGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCACGTTTGATGCCAAA
190 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
** *
12701936 ACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAT
255 ACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
*
12702001 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
320 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
12702066 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
385 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
12702131 GATACACGGCTTGCGCATCCCCGTCTCTCTGGCCGACGTAGTGACGGCCCGCCCGCCCGACCGCT
450 GATCCACGGCTTGCGCAT-CCCATCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCCGACCGCT
* *
12702196 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAACATAGGACCGGACCGAGGG
513 CATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATAGGACCGGACCGAGGG
* * * *** * *
12702261 TTGTGGCAGCAGGATCGCCAGCATGGAGAGTCAGACCCTGTCGATCCCCGGCTTGGGCATCCCGC
578 TTGCGGCAGCAGGATCGCCAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGC
* * * *
12702326 CCCTCTGGCAAGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGGGTTCATT
642 CCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
12702391 CCCAGTCTAAGCATACGAAGTTCATTTCCAATCTATGATCGGACCGGACCGAGGGTTACGGTAGC
707 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
** *
12702456 ACATATTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAA
772 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAA
* * *
12702521 CCTGACCGATGGTGTTGGGGTTCCAACGATTAGGGGGGCCGGGGGGTGTGCGCA
837 CCTGACCGACGGTGTTGGGGTTCCACCGATTCGGGGGGCCGGGGGGTGTGCGCA
12702575 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
*
12702640 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
66 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
12702705 GTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
131 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
12702770 ATGTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
196 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
*
12702835 TCTGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAGAAATCATGAAAAATAGAAAAC
261 TCTGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* ** * * *
12702899 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGAAGATTATAGGAATTTACAGGCCAT
325 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
12702964 AAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCT-AA---A-C--CCA-CC--T--A--C
390 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
12703015 A--GCTTGCGCATCCCATCTCTTTGGTCGACGTAGTGCCCGTCCGCCCGCCCGCCCACTCGTTTC
455 ACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCCGACCGCTCATTTC
* * * * * *
12703078 GTCGGTTGGCTTAGGCATACAGAGTTCATT-ACAAGTCTAAGATTGGATCAGACTG-GAGGTTGC
519 ATCGGTTGGCTTAGGCATACGGAGTTCATTCAC-AGTCTAAGATAGGACCGGACCGAG-GGTTGC
* * * * ** * *
12703141 AGTAGCAGGATCGACAGCATGCAGAAAGGGACCTGGCCGATCCCTGGCTTGCGCATCCCGCCCCT
582 GGCAGCAGGATCGCCAGCACGCAGAGGGGGACC-CGCCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
12703206 CTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCA
646 CTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * *
12703271 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCACAT
711 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * ** *
12703336 GCTAGGCTCAGGCACGTGCCAGTGCCGCATTTTTCTTCACCCGGGGTCACTCCTACTGGAGCAGC
776 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-TCGGGG-CA--CC-A-T----C-GC
* * *
12703401 AGTACGGAGAACCTGA-CGA-TGTAGCATGTGGGTT-CACCGA-TCGGTGGGGTCTGGGAGGGTG
830 ----CGGAGAACCTGACCGACGGT-G-TTG-GGGTTCCACCGATTCGG-GGGG-CCGGG-GGGTG
12703462 TGCGCA
885 TGCGCA
* *
12703468 CATGA-GTGTGATGGGTGCTGGTACTT-GCCC-TATA-T---CGCCT-T--CTCATCAAACCTTG
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
* *
12703523 AGAACTCA-A-CCCGTT-AAGAGC-TTTGAGATTTTTACAGGTTTGCTGACA-TAGCTCATTAAA
66 AGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGC-CATTAAA
* * *
12703583 GTGTCTGAAA-GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAAGCACTTCAAGTTCTTAG
129 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-A-CACTTCGAGTTTTTAG
* * *
12703647 CTGAA-TTTTTTATGCATGCCCAA-AAAGATA-AAGGATCA--TCTAGCCAAG-TT-GGGCC-CA
192 CTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAA
* * * * **
12703704 A-T-C-TCTGAAAATATTTT-AAAAATCTTGAACC-CATAAAAGTTCCAAAAATTGTGAAAATAT
255 ACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTA-AAAAGTTTCAAAAATCATGAAAA-AT
* *
12703764 AGAAAAACGGGGAGTCGATC-TG-CATGAAACTCACACGTGAA-GCTAAAGGGACCATTGGTATG
318 AG-AAAAC---GAGTCG-TCTTGCCATGAAACT-TCACGTGAAGGCTTAAGGGACCATT-GTATG
*
12703826 AATTCTACAAG-CATAAAAATGGCTATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCT
376 AATT-TACAAGCCATAAAAATGGC-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
12703890 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGTCGTAGTGCCAGCCCGCCCG
439 ACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCC-GCCCGCCCG
* * * * **
12703955 CCCGCCCGCTCATTTCATCGGTTGGCTTACGCATACGGAGTTCAATCCCAGTCTAAGATTTGACC
503 CCCGACCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATAGGACC
* * * * * * * *
12704020 AGACCAAGGGTTGTGGTAGCAAGATCGGCAGCACGTAGAAGGGGACCCGACC-ATTCCCCGGCTT
568 GGACCGAGGGTTGCGGCAGCAGGATCGCCAGCACGCAGAGGGGGACCCG-CCGA-TCCCCGGCTT
* ** * * *
12704084 ACGCATCCCGCCCCTCCAG-ACGGCTGAGAGCCCGCACGCTTGTTTTGT-GG--G--TT----A-
631 GCGCATCCCGCCCCTCTGGCA-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * **
12704138 AC-----T--TT----G-----GCATACGAAGTTCATTCGCAGTCTAAGATCGGACCAGATTGAG
695 ACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * *
12704187 GGTTGTGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACC
760 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* ** * * *
12704252 ATCACCGGAGAACCTGACCGACGGTAATGGGGTTTCGCC-AATCGGGGGGGCCGAGGAGGGTGTG
825 ATCGCCGGAGAACCTGACCGACGGTGTTGGGGTTCCACCGATTC-GGGGGGCCG-GG-GGGTGTG
12704316 CGCA
887 CGCA
12704320 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
* *
12704385 ACAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
66 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
** *
12704450 GTCTTTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGA
131 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
12704515 ATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTGCT
196 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** ** * ** * *
12704580 TCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAAAGTAGAAAACG
261 TCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
12704645 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
326 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
12704710 AAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGTTCCA
391 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
12704775 CAGCTTGCGCATCCCATCCCTCTGGCC-AGCGTAGT-------GCCCGTCCGTCCGCTCATTTCG
456 CGGCTTGCGCATCCCATCTCTCTGGCCGA-CGTAGTGCCGCCCGCCCGCCCGACCGCTCATTTCA
* * * * * ** ** *
12704832 TTGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGAATTAGG-TTGAGGGTTACGG
520 TCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATAGGA-CCGGACCGAGGGTTGCGG
* * * * ** * * *
12704896 TAGCAGGTTCGGCAACACATAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCTCGCCCCT-T
584 CAGCAGGATCGCCAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * * * *
12704960 TGCTCGACTGTGCACCCCCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
648 GGC-AGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
12705025 -CGTAAGCGTAC-AGAGTTCATTCCCAGTGTAAGATTGGACCGGACCAAAGGTTGCGACAGCACA
712 TC-TAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* ** * *
12705088 TGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGCCACCATCACCGGAGCATCA
775 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC-G-G----A
** ***
12705153 TCGAAGGACCTGACCGACGGCATTGGGGTTCCGGTGA-TCGGGGGGCCGGGGGGTGTGCGCA
834 --G-A--ACCTGACCGACGGTGTTGGGGTTCCACCGATTCGGGGGGCCGGGGGGTGTGCGCA
* * *
12705214 CATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
* *
12705279 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGT
66 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
12705344 GTCTGAAATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
131 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
12705409 ATTGTTTTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
196 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
12705474 TCCGAAAGAATTTTAAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
261 TCTGAAAAAATTTT-AAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
12705538 CGAATCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCA
324 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
12705603 TAAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
389 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* ** * * * *
12705668 CACGGTTTGCAAATCCCGTCTATCTGGCC-AGCGTAATGCCTGCCCGCCCGCCTGTA-CGCTCAT
454 CACGGCTTGCGCATCCCATCTCTCTGGCCGA-CGTAGTGCC-GCCCGCCCGCCCG-ACCGCTCAT
* * * *
12705731 TTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCATAGTCTAAGATCA-GACCGGACTGAGAGTT
516 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGAT-AGGACCGGACCGAGGGTT
12705795 GCGGCAGCA
580 GCGGCAGCA
12705804 CATGCTGGGC
Statistics
Matches: 3493, Mismatches: 428, Indels: 381
0.81 0.10 0.09
Matches are distributed among these distances:
851 8 0.00
852 43 0.01
853 25 0.01
854 6 0.00
855 4 0.00
856 2 0.00
857 1 0.00
859 5 0.00
860 136 0.04
861 5 0.00
862 22 0.01
863 4 0.00
864 26 0.01
865 62 0.02
866 58 0.02
867 86 0.02
868 97 0.03
869 42 0.01
870 28 0.01
871 31 0.01
872 25 0.01
873 20 0.01
874 31 0.01
875 27 0.01
876 334 0.10
877 59 0.02
878 10 0.00
879 53 0.02
880 60 0.02
881 37 0.01
882 5 0.00
883 60 0.02
884 318 0.09
885 64 0.02
886 124 0.04
887 8 0.00
888 4 0.00
889 13 0.00
890 16 0.00
891 63 0.02
892 80 0.02
893 691 0.20
894 324 0.09
895 209 0.06
896 31 0.01
897 42 0.01
898 9 0.00
899 14 0.00
902 2 0.00
903 69 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCGACCGCTCATTTCAT
CGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCA
GCAGGATCGCCAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
AGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGA
CGGTGTTGGGGTTCCACCGATTCGGGGGGCCGGGGGGTGTGCGCA
Found at i:12706812 original size:703 final size:702
Alignment explanation
Indices: 12705037--12707194 Score: 3237
Period size: 703 Copynumber: 3.0 Consensus size: 702
12705027 TAAGCGTACA
* ** * * * *
12705037 GAGTTCATTCCCAGTGTAAGATTGGACCGGACCAA-AGGTTGCGACAGCACATGCTAGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGA-GTTGCGGCAGCACATGCTGGGCTCAGG
* *** * *
12705101 CATGTGCTGGTGCCGCATTTTTCTTTGTCGGGCCACCATCACCGGAGCATCATCGAAGGACCTGA
65 CATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCC-G-G----A--G-A--ACCTGA
* * *
12705166 CCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATATGTGATGGGT
119 CCGGCAGCATTAGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATATGTGATGGGT
12705231 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
184 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12705296 AAAAAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
249 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACAC
* *
12705361 TTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTACATGCC
314 TTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
12705426 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAA
379 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AA
* * * *
12705491 AAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATG
443 AAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
* * * * *
12705555 AAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCA
507 AAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATTAAAATGGCATTGGCA
* *
12705620 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TT-TGCAAATC
572 TGCAGAAATATTAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC--ATC
* * * * * *
12705683 CCGTCTATCTGGCCAGCGTAATGCCTGCCCGCCCGCCTGTACGCTCATTTCATCGGTTGGCTTAG
635 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC----CGCTCGTTTCTTCGGTTGGCTTAG
12705748 GCATACG
696 GCATACG
* ** * ** *
12705755 GAGTTCTTTCATAGTCTAAGATCAGACCGGACTGAGAGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCGGCAGCACATGCTGGGCTCAGGC
** * * *
12705820 ATGTGCTGGTGCCGTATTTTTCTTCACCGGGGTACCATCGCCGGAGAACATGACTGGCAGCATTA
66 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCAGCATTA
* *
12705885 GGGTTCCGATGATCGGGGGGGCCGAGGTGGGTGTGAGCACATGATATGTGATGGGTGCTGGTACT
131 GGGTTCCGGTGATC-GGGGGGCCG-GG-GGGTGTGCGCACATGATATGTGATGGGTGCTGGTACT
12705950 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAT
193 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAT
12706015 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTGTTCAA
258 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTGTTCAA
* *
12706080 ATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAAT
323 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
*
12706145 ACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
388 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
*
12706210 ACCGCAAAAAGTTTCAAAAATCATGAAATATAAAAAACGAGTCGTCTTGCCATGAAACTTTACGT
453 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTTACGT
12706275 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATTAAAATGGCATTGGCATGCAGAAATAT
518 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATTAAAATGGCATTGGCATGCAGAAATAT
*
12706340 TAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGC
583 TAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGC
* *
12706405 CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTACGCATATG
648 CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACG
* * * * *
12706460 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGGACATGCTGGGCTTAGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCGGCAGCACATGCTGGGCTCAGGC
* * * * *
12706525 ATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGATCCTGACCGGCCGCATTA
66 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCAGCATTA
* * * *
12706590 GGGTTCCGGCGATCAGGGGGGCCGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
131 GGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTG
* * *
12706655 GCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCTAAAAAAGCTTTT
195 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTT
*
12706720 GAGATTTTACAGGTTTGCTGCCAGTAGCCAAGAAAGTGTCTGAAATGGGGACACTTTGTTCAAAT
260 GAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTGTTCAAAT
*
12706785 GGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
325 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
*
12706850 AAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
390 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
**
12706915 CGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTTACGTGA
455 CGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTTACGTGA
* *
12706980 AGGCTTAAGGGACCATTGTATGAATTTTC-ACTCCATTAAAATGGCATTGGCATGCAGAAATATT
520 AGGCTTAAGGGACCATTGTATGAATTTACAAGT-CATTAAAATGGCATTGGCATGCAGAAATATT
* * * * *
12707044 AAGATATGCCTAAACCCACCTACGACCCTATGGATCCACGGCTTGCGCATCCCGTCTCTCTAGCT
584 AAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCC
* *
12707109 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTTTCGATTGGCTTAGGCATACG
649 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACG
12707163 GAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGAC
12707195 TGAGGGTTAC
Statistics
Matches: 1325, Mismatches: 107, Indels: 31
0.91 0.07 0.02
Matches are distributed among these distances:
702 2 0.00
703 547 0.41
704 2 0.00
705 156 0.12
707 26 0.02
708 9 0.01
709 208 0.16
710 280 0.21
711 3 0.00
712 1 0.00
716 1 0.00
717 1 0.00
718 88 0.07
719 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (702 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCGGCAGCACATGCTGGGCTCAGGC
ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCAGCATTA
GGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTGTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC
GCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGTCATTAAAATGGCATTGGCATGCAGAAATATTAA
GATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACG
Found at i:12708331 original size:899 final size:898
Alignment explanation
Indices: 12706453--12709354 Score: 4113
Period size: 899 Copynumber: 3.2 Consensus size: 898
12706443 GTTGGCTTAC
* * * * * * * * * *
12706453 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCGAAGATCAGATCGGATCGAGGGTTGTGACAGCACATGCTAGG
** *
12706518 CTTAGGCATGTGCTGGTGCCACATTTTTCTTC-GCTGGGGCACCA-T--C---G--T--C-GGAG
66 CTCCGGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGGCACCATTGCCGGAGCATCGCAGGAG
* * * * * *
12706571 ATCCTGACCGGCCGCATTAGGGTTCCGGCGATCAGGGGGGCCGG-GGGGTCTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGT
* *
12706635 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * **
12706700 CACCCCCTAAAAAAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAAGAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12706765 TGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12706830 GTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
12706895 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * ** *
12706960 TGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCACTCCATTAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12707025 ATTGGCATGCAGAAATATTAAGATATGCCTAAACCCACCTACGACCCTATGGATCCACGGCTTGC
585 ATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** ** *
12707090 GCATCCCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTTTCGATTGGCTTA
650 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCATCGGTTGGCTTA
* * **
12707155 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATTGGT
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTACGGCAGTAGGATTGAA
* * * * * *
12707220 AGTACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCGCCCCCCTAGCTGATTGAGTG
778 AGCACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * *
12707285 CCCGCACGCTCGTTTCGTCTGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
843 CCTGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12707341 GCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGATCGAGGGTTG-CAGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCGAAGATCAGATCGGATCGAGGGTTGTGA-CAGCACATGCTAG
* * * *
12707405 GCTCTGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATTGCAGGAG
65 GCTCCGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATTGCCGGAGCATCGCAGGAG
* * **
12707470 AACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGCGATCGGTGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGT
12707535 GCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
***
12707600 CACCTTATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12707665 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * *
12707730 GTGCATGCCAACAAAAATACAAAAATCATGTCTACCAGGTTTGGGGCCAAAACTTCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
12707795 AATTTTAAAAAATCCCGAACCG-TAAAAGTTTTAAAAATCATGACAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12707859 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
12707924 ATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
12707989 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTA
650 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCC-GCCCGCTCGTTTCATCGGTTGGCTTA
* * * *
12708054 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACAGCAGCAGGATCGAA
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTACGGCAGTAGGATTGAA
* * *
12708119 AGCACACAGAGGGGGACCCGA-CTTATCCACGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
778 AGCACGCAGAGGGGGACCCGATC-GATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
12708183 GCCTGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCTGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12708240 GCATATGGAGTTCATTCCCAGTCGAAGATCAGATCGGATCGAGGGTTATGATAGGACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCGAAGATCAGATCGGATCGAGGGTTGTGACAGCACATGCTAGG
** * * *
12708305 CTCCGGCATGTGCTGGTGCTGCATTTTTCCTCATCGGCGCACCATTGCCAGAGCATCGCAGGAGA
66 CTCCGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATTGCCGGAGCATCGCAGGAGA
* * ** *
12708370 ACTTGGCCGGCGGTGTTGGGGTTTCGACGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGTG
* *
12708435 TGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12708500 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12708565 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12708630 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12708695 ATTTTAAAAAATCTCGAATCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12708760 GCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
12708825 TTGGCACATAGAAATATGAAGATGTGCCTAAA-CCAGCCTACCACCTTATCGATCCACGGCTTAC
586 TTGGCATGTAGAAATATAAAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGGCTTGC
**
12708889 GCATCCCGTCTCTCTGGCCAAAGTAGTGCCCG--C-CCGCCCGCTCGTTTCATCGGTTGGCTTAG
650 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * *
12708951 GTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAAGGTTGCGGCAGTAGGATTGACA
715 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTACGGCAGTAGGATTGAAA
* * * *
12709016 GCATGCAGAGAGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
779 GCACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* * * * * *
12709081 TTGCACACTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTGCTAGTCTAA
844 CTGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12709136 GCATACGAAGTTCTTTCCCAGT-GTAAGATCGGA-CTGGATCGAGGGTTGCGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCG-AAGATCAGATC-GGATCGAGGGTTGTGACAGCACATGCTA
* ***
12709199 GGCT-CGTGCATATGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCAGG
64 GGCTCCG-GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATTGCCGGAGCATCGCAGG
* * * * *
12709263 AGAACCTGACCGACGGCATTGGCGTTTCGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACGTGA
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGTGGGGTGTGCGCACATGA
**
12709328 TGTGCGATCTGTGCTGGTACTTGGACC
192 TGTGCGATGGGTGCTGGTACTTGGACC
12709355 GCATATGGAA
Statistics
Matches: 1793, Mismatches: 196, Indels: 41
0.88 0.10 0.02
Matches are distributed among these distances:
888 91 0.05
889 2 0.00
891 1 0.00
894 1 0.00
895 4 0.00
896 325 0.18
897 45 0.03
898 5 0.00
899 851 0.47
900 468 0.26
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCGAAGATCAGATCGGATCGAGGGTTGTGACAGCACATGCTAGG
CTCCGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATTGCCGGAGCATCGCAGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTACGGCAGTAGGATTGAAAGC
ACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCT
GCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12710278 original size:26 final size:26
Alignment explanation
Indices: 12710238--12710290 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12710228 TTTGACTTAT
*
12710238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12710264 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12710290 G
1 G
12710291 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:12711796 original size:898 final size:898
Alignment explanation
Indices: 12709366--12717293 Score: 9712
Period size: 902 Copynumber: 8.9 Consensus size: 898
12709356 CATATGGAAA
* *
12709366 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGCTTGCG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
* * * *** *
12709431 GCAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTTACCGGGGCACCATCGTCG
66 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * ** ** *
12709496 GAGCATCACCGGAGAACCTGATCGGCGGTATTGGAATTTC-AGCGATCGGGGGGGCCGGTGGGGT
131 GAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGA-CGATC-GGGGGGCCGG-GGGGT
*
12709560 GTGCGCACATGATGTGTGATGGGTGCTGG----T--CCC---TA-T------C--T--CTCATCA
193 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
12709605 AACCTCGGGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
258 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
12709670 TTAAAGTGTTTGAAATAGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
323 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
12709735 TAGCTAAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAA
388 TAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * ** *
12709799 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATA
452 AACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* *
12709864 GAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAA
517 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
12709929 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
582 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
12709994 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAATGCCCGCACGCCCTCTCGCCCGCT
647 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACG--C-CT-GCCCGCT
* * * * * **
12710059 CGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTATGATTAGAATG-GACCGAGG
708 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAGG
** * * * *
12710123 GTTGCCACAACAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCG
773 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * * * *
12710188 CCCCTCTGGCCGACTGACCGCCTGCACGCTCATTTTGTGGTTTGACTTATGCATACGGAGT
838 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
12710249 TCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGTCTAAGATCGGACCAGG-CTGAGGGTTGC
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGC
* * * ** *
12710313 GACCGCACATGCTAGGCTTC-AACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGC
65 GGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* ** * * * **
12710377 CAGAGCATTGCAGGAGAACCTGACCGGCGGCAACGGGGTTCCGACGATCGGGGGGGCCGAGGGGG
129 CGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGG
*
12710442 TGTGCGCACATGATGTGTGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATC
192 TGTGCGCAC---A----TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
12710507 CCTCATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGGC
250 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
12710572 A-TAAGCCATTAAAGTGTTTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACT
315 AGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
12710636 TTGAGTTTTTAACTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTT
379 TCGAGTTTTTAGCTGAAT-TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
12710701 TGGGGCTAAAACTCC-TTCGAAAAAAATTTAAAAAAATCTCAAACC-CTAAAAAGTTTCAAAAAT
443 TGGGGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAATCTCGAACCGC-AAAAAGTTTCAAAAAT
*
12710764 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
506 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
12710829 ATGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGACGTGCCTAAAGCCACC
571 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * *
12710894 TACCACCATATCGATCTACGGCTTACGCATCCTGTCTCTCTGGCTGGCATAGCGCCCGCACGCCT
636 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCT
* * * * *
12710959 GCCCGCTCGTTTGGTTGGTTGGCTTAGGCATACAGAGTTCATTACCAGTCTCAGATCAGACCGA-
701 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAG
** * * * * *
12711023 ACTAAGGTTTGTGGCAGCAGAATCGATAGCACACAGAGGGGGACCC-AGCCGATCCCCGGCTTGC
766 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGC
* ** *
12711087 GCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACG
830 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
12711152 GAGT
895 GAGT
* * * * * * *
12711156 TCATTCCCAGTCTAAGCATATGGAGGTCACTCCCAGTCCAAGATCAGACTGGACCGAGGGGTGCA
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
* * *
12711221 GCAGCACATGCTGGGCTCGGGCTTGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCG
66 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* ** * * *
12711286 GGGCATCATTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGTGGGCCGGGGGGTGT
131 GAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGT
* * * **
12711351 GTGCACATGATGTGCAATGGGTGCTGGTACTTGACCCTTATATTCACCCCCTATCCCTCATCAAA
195 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
12711416 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
260 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
12711481 AAAGTGTCTGAAATAGGGACACTTTTTTCAAAAGGTTACAAAATCTTGTACACTTCGATTTTTTA
325 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
12711546 GCTAAATTTTTTTTGCATGCCAAGAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAC
390 GCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
12711611 TCCTTTCAAAAAAATTTTAAAAAATC-CGAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGA
455 TCCTTTCGAAAAAATTTTAAAAAATCTCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
12711675 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
519 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * * * *
12711740 CCATAAAAATGGCATTTTCATGTAGATATATGAAGATGTACCTAAACCCACCTACCAGCCTATCG
584 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
12711805 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGCTGT-GCCAGCCCGCCCGCCTACTCGCCC
649 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG--GC-GTAG--TGCCCGCACG-C--CT-GCCC
* *
12711869 TCTCGTGTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCA-ACC-AGACC
705 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCGAGACC
* * * * * * * * * *
12711932 GAGGCTTGCGGTAGTAGGATCGGCAGTACACAGAGGGGCACCCAACCGATCCCCAGCTTGCGCAA
769 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * * * * *
12711997 CCCTCCCTTCTGGCTGGCTGAGCACCCGTACGCACGTTTCGTGGTTTGACTTAGGCATACGGAGT
834 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
12712062 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
* *
12712127 GCCA-CACAAGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C
66 G-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* *
12712188 ---G--TCA---GAGAACCTGACCGACGACATTGAGGTTCC-AGCGAACGGGGGGGCCAGGGGGG
130 GGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGA-CGATC-GGGGGGCC-GGGGGG
* * * *
12712244 TGTGCGCTCATGATGTGCGATGGCTACTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATC
192 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
12712309 AAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
257 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
12712374 ATTAAAGTGTCTGAAATGGGGATAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
322 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
12712439 TTAGCTGAATGTTTTTGTGCATGCCAA-AGAAAATACAAGGATCACGACTACCAAGTTTGGGGCC
387 TTAGCTGAAT-TTTTTTTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
12712503 AAAACT-CTTTCCGAAAAAATTTTAAAAAATCTCGAACC-CTAAAAAGTTTCAAAAATCATGAAA
450 AAAACTCCTTT-CGAAAAAATTTTAAAAAATCTCGAACCGC-AAAAAGTTTCAAAAATCGTGAAA
* * *
12712566 AATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATT
513 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
12712631 TGCAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGACGTGTCTAAAGCCACCTACCACC
578 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
12712696 CTATCGACCCACGACTTGCGCATCCCGTCTCTCTGACCGGCATAGTGCTCGCATGCCCT-CCCGC
643 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACG-CCTGCCCGC
* * * * *
12712760 TCATTTCGTCAGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGA-ACCAAG
707 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAG
* * * * * * * * *
12712824 GGCTGCAGTAGCAGGATGGATAGCACACAGAGGAGGACCCGATCGATCCCCGGCTTGCACATCCC
772 GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* *
12712889 GCCCCTCTGGCCGATTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
837 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
12712951 TCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGATTGGACCGAGGGTTGCG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
* * * * *
12713016 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGCCGGGGCACCATTGCCA
66 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
** *
12713081 GAGCATCGTCGAAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGCGGCCGGGGGGATG
131 GAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGG-GGCCGGGGGG-TG
* * *
12713146 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCGTCAA
194 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
12713211 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
259 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
** *
12713276 TAAAGTGTCTTTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTGT
324 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
12713340 AGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTACCAATTTTGGGGCCAAA
389 AGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * **
12713405 ACTCC-TTCTGGAAAAATTTTAAAAAATCCCGAACCG-TAAAACTTTTGAAAATCGTGAAAAATA
453 ACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
*
12713468 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
517 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * ** *
12713533 AGCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGCACCGAAACCCACCTACCACCCTAT
582 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
12713598 CGATCAAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCTCGCCTGTCCGCCCGCT
647 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCC--T--GCCCGCT
* * * ** * *
12713663 CATTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCATTCTAAGATTGGATC-AGACCGAGT
708 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAGG
** * * * * * * *
12713727 GTTGCGGTTGCAGGATCAACAGCACGTAAAGAGGGACCCGACCGATCGCCGGCTAGCGCATCCCA
773 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* ** * * * *
12713792 TCCCTCTGGCTAACTAAGCGCCCGCACGCTCGTTTCATGTGTTAACTTAGGCATACGGAGT
838 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * ** ** **
12713853 TCATTCCCAGTCTTAGCATACGTAGTTCATTCCCAGTCTACGATCAAAC-CAAGCTAAGGGTTGC
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CCGAGGGTTGC
* * *
12713917 GGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCC
65 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
*** * * * *
12713982 GGAGCATTGTCAGAGAACCTGACCGACGATATTGAGGCTT-CGACGATCGGAGGGGTCGGGGGGG
130 GGAGCATCACCGGAGAACCTGACCGACGACATTG-GGGTTCCGACGATCGG-GGGG-CCGGGGGG
* * *
12714046 TGTGCACACATGATCTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
192 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
12714111 AAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCC
257 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
12714176 ATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
322 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
12714241 TTAGCTTAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
387 TTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
12714306 AAAATCC-ATCTAAAAAAATTTTAAAAAATCTCCAACCGCAAAAAGTTTCAAAAATCGAGAAAAA
451 AAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * *
12714370 TCGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTA
515 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * * *
12714435 CAAGCCATAAAAATGGCACTGGTATGCAGAAATATAAAGATGTGCGTAAACCCACCTACCACCCT
580 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
12714500 A-CTGATCCA-------CG------G---CT-T-----GCGTA-T---C-C-CG--T-----CTC
645 ATC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCTGCCCGCTC
* ** *
12714529 ---TC-T--GTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATTTGATC-AGACCGAGGG
709 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAGGG
** ** * ** * * * *
12714587 TTGTAGCAGCAACATCGGCAGCACATAGAGGGGGGCTCGGCCGATCCTCGGCTTGCGCATCCCGC
774 TTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * *
12714652 CCCTCTGGCC-AGCTGAGCCCCCGCACGCTCGTTTAGTGGGTTAACTTAGGCATACGGAGT
839 CCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
** * * *
12714712 TCATTCCTGGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACTGAGGGTTGCG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
* * *
12714777 GCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGTCG
66 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* *
12714842 GAGCATCACCGGAGAACCTGACTGACGGCATTGGGG-T----CGA-----------GGGGGTGTG
131 GAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
*
12714891 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAT
196 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
12714956 GTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTA
261 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
12715021 AAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCAAGTTTTTA
326 AAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* ** *
12715085 GCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCACAA
390 GCTGAATTTTTT-TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* ** **
12715150 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAGTCGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
454 CTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
12715215 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAG
519 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
12715279 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGAGGTGCCTAAACCCACCTAACACCCTATCG
584 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
12715344 ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CTGCCCGCCCGCTCGTTT
649 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCAC-GCCTGCCCGCTCGTTT
* * * * * * *
12715408 GGTCGATTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATC-GAATC-AGACTGTGGATTG
713 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAGACCGAGGGTTG
* * * * * * * *
12715471 CAGCAACAAGATTGGA-AGCACGTAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCACCC
777 CGGCAGCAGGA-TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * **
12715535 TTTTGGCCGACTGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
841 CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * **
12715593 TCATTCCCAGTCTAAGGATACGGATTTTATTCCCAGTCTAAGATTAGA-TCGGACCGAGGGTTGC
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGC
* ** * * *
12715657 GGTAGCGGATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCGTTGCC
65 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* *
12715722 GGAGCATCACCGGAGAACCTGACCGGCGATATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGG
130 GGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGG-GGCC---GGGGG
* *
12715787 GTTGTGCGCACATGATGTGCGACGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
191 G-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** *
12715852 TCAAACCTTGAGAACTCACATGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
255 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
12715917 CCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTAAACTTCGAGT
320 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
12715982 TTTTAGTTGAA-TTTTTTTGTACTTCGCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGA
385 TTTTAGCTGAATTTTTTTTGCA-TGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * *
12716046 CCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAA
448 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * *
12716111 AATAGAAAACGTGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATT
513 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * * * * *
12716176 TACAAGCCATAAAAATGGCATTGGCACAAAGAAATTTGACGAGGTGCCTAAACCCATCTACCATC
578 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
12716241 CTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGACGTAGTGCTCGCCTTCCCGCCCGCC
643 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-G----CCCGCACGCC
* * * * *
12716306 CGTCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATC-A
700 TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * * * ** *
12716370 GACCGAGGGTTGCGGTAGCAGGATCAAAAGCACGCAGAGGGGGACTCGATTGATCCTCGGCTTGC
765 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * *
12716435 GCATCCCGCCCTTCTGGCCGACTGAGCGCCCGCACGGTCGTTTCATGGGTTGACTTAGGCATACG
830 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
12716500 GAGT
895 GAGT
* ** * *
12716504 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTTTGATCGGA-TCGGACTGACGGTTGC
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGC
* ** *
12716568 GGCAGCACATGCTGGGCTTGGGCATGTGCTCTTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCC
65 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * *
12716633 GGAGCATCGCCGGAGAACCTAACC-AGCGGCATTGGGGTTCCGACGATCGGGGAGGCCTGGGGGT
130 GGAGCATCACCGGAGAACCTGACCGA-CGACATTGGGGTTCCGACGATCGGGG-GGCC-GGGGGG
* *
12716697 TGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
192 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
12716762 AAACCTTGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCC
257 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
12716827 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTTCACCTCGAGTTT
322 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
12716892 TTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCA
387 TTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
12716957 AAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT-AGAAAATCATGAAAAA
451 AAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA-AAAATCGTGAAAAA
*
12717021 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
515 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
12717086 CAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATATACCTAAACCCACCTACCACCCT
580 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
12717151 ATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCACGCCCGCCCGCCCG
645 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCA----CGCCTGCCCG
*
12717216 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCG-GACCGA
706 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGA
*
12717280 TGGTTGCGGCAGCA
771 GGGTTGCGGCAGCA
12717294 CATGCTAGGC
Statistics
Matches: 6104, Mismatches: 743, Indels: 375
0.85 0.10 0.05
Matches are distributed among these distances:
840 85 0.01
841 341 0.06
842 1 0.00
847 2 0.00
853 1 0.00
854 3 0.00
856 2 0.00
857 2 0.00
858 3 0.00
859 285 0.05
860 1 0.00
861 1 0.00
862 7 0.00
863 1 0.00
865 3 0.00
866 1 0.00
867 2 0.00
868 1 0.00
872 1 0.00
875 3 0.00
876 2 0.00
877 1 0.00
878 2 0.00
879 1 0.00
880 1 0.00
881 293 0.05
882 9 0.00
883 162 0.03
884 7 0.00
886 4 0.00
887 1 0.00
888 6 0.00
889 270 0.04
890 20 0.00
891 3 0.00
892 1 0.00
893 8 0.00
894 2 0.00
895 41 0.01
896 201 0.03
897 260 0.04
898 446 0.07
899 276 0.05
900 228 0.04
901 16 0.00
902 826 0.14
903 225 0.04
904 224 0.04
905 5 0.00
906 293 0.05
907 316 0.05
908 438 0.07
909 14 0.00
910 152 0.02
911 602 0.10
912 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
GAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCTGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAGGGTTGCGGC
AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
Found at i:12712080 original size:26 final size:26
Alignment explanation
Indices: 12712051--12712103 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12712041 TTTGACTTAG
12712051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12712077 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12712103 G
1 G
12712104 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12713879 original size:26 final size:27
Alignment explanation
Indices: 12713837--12713891 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
12713827 CATGTGTTAA
12713837 CTTAGGCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATTCCCAGT
*
12713864 CTTA-GCATACGTAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATTCCCAGT
12713890 CT
1 CT
12713892 ACGATCAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATTCCCAGT
Found at i:12714753 original size:26 final size:26
Alignment explanation
Indices: 12714701--12714753 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12714691 GTTAACTTAG
**
12714701 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12714727 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12714753 G
1 G
12714754 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12715615 original size:26 final size:26
Alignment explanation
Indices: 12715584--12715634 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12715574 TGACTTAGGC
12715584 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
* *
12715610 ATACGGATTTTATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12715635 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:12716523 original size:26 final size:26
Alignment explanation
Indices: 12716493--12716542 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12716483 GTTGACTTAG
12716493 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12716519 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
12716543 TTGATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12717027 original size:908 final size:902
Alignment explanation
Indices: 12714532--12717293 Score: 3932
Period size: 908 Copynumber: 3.1 Consensus size: 902
12714522 CCGTCTCTCT
* * *
12714532 GTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATTTGATCAGACCGAGGGTTGTAGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCAGCAGC
* * * * * *
12714597 AACATCGGCAGCACATAGAGGGGGGCTCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
66 AAGATCGGAAGCACGTAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCC
* * **
12714662 -AGCTGAGCCCCCGCACGCTCGTTT-AGTGGGTTAACTTAGGCATACGGAGTTCATTCCTGGTCT
131 GA-CTGAGCGCCCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
12714725 AAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACTGAGGGTTGCGGCAACACATGCTG
194 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTG
* * *
12714790 GGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
259 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATCACCGGA
*
12714855 GAACCTGA-CTGACGGCATT--GG----G--G-TC---GA----GGGGG-TGTGCGCACATGATG
324 GAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGTTGTGCGCACATGATG
**
12714902 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATGTTGAGAACTC
388 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
12714967 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT-AG
453 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA-
*
12715031 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCAAGTTTTTAGCTGAATTTTT
517 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCGAGTTTTTAGCTGAATTTTT
* * *
12715096 TGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCACAACTCCTTCCGAA
582 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAA
** * * *
12715161 AAAATTTTAAAAAATCTCGAGTCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
647 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCGT
12715226 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
712 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12715291 CATTGGCACGCAGAAATATGAAGAGGTGCCTAAACCCACCTAACACCCTATCGATCCACAGCTTG
777 CATTGGCACGCAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
12715356 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT--GCCCG--C-CCGCTCGTTTGGTCG
842 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCTCCGCCCGCCCGCCGCTCGTTTGGTCG
* * * * * * *
12715413 ATTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGA-TCGAATCAGACTGTGGATTGCAGCAA
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ATCAGACCGAGGGTTGCAGCAG
* * *
12715477 CAAGATTGGAAGCACGTAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCACCCTTTTGGC
65 CAAGATCGGAAGCACGTAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGC
** *
12715542 CGACTGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
130 CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * ** * * **
12715607 AGGATACGGATTTTATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGTAGCGGATGCTGG
195 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGG
* *
12715672 GCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCGTTGCCGGAGCATCACCGGAG
260 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATCACCGGAG
* **
12715737 AACCTGACCGGCGATATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGGGTTGTGCGCACATGA
325 AACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGAGGCC----GGGGGTTGTGCGCACATGA
* *
12715802 TGTGCGACGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
386 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
** *
12715867 TCACATGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTTTCTG
451 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
** *
12715932 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTAAACTTCGAGTTTTTAGTTGAATTTT
516 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCGAGTTTTTAGCTGAATTTT
* * *
12715997 TTTGTAC-TTCGCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCG
581 TTTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCG
* * * *
12716061 AAAAAATTTTTAAAAATCCCGAACTGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGTGT
645 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT-AGAAAATCATGAAAAATAGAAAACGAGT
*
12716125 CGTCTTGCCATGACACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAA
709 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GACCATTGTATGAATTTACAAGCCATAAAA
** * * * *
12716190 ATGGCATTGGCACAAAGAAATTTGACGAGGTGCCTAAACCCATCTACCATCCTATCGATCCACGG
773 ATGGCATTGGCACGCAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
12716255 CTTGCACATCCCATCTCTCTGGCCGACGTAGTGCTCGCCTTCCCGCCCGCCCGTCCGCTCGTTTG
838 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCC-T-CCGCCCGCCCG-CCGCTCGTTTG
12716320 GTCG
899 GTCG
* *
12716324 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGGTAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCAGCAGC
* ** * **
12716389 AGGATCAAAAGCACGCAGAGGGGGACTCGATTGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCC
66 AAGATCGGAAGCACGTAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCC
*
12716454 GACTGAGCGCCCGCACGGTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
12716519 GCATACGGAGTTCATTCCTAGTCTTTGATCGGATCGGACTGACGGTTGCGGCAGCACATGCTGGG
196 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* ** *
12716584 CTTGGGCATGTGCTCTTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATCGCCGGAGA
261 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATCACCGGAGA
* *
12716649 ACCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGAGGCCTGGGGGTTGTGCGCACATAATGTG
326 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGAGGCC-GGGGGTTGTGCGCACATGATGTG
*
12716714 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
390 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* **
12716779 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
455 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
*
12716844 GGGGACACTTTTTTCAAATGGTCACAAAAT-TTTGTTCACCTCGAGTTTTTAGCTGAATTTTTTT
520 GGGGACACTTTTTTCAAATGGTCACAAAATCTTT-TTCACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
12716908 GTGCAAGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAA
584 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
*
12716973 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCATCT
649 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCGTCT
12717038 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
714 TGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * ** *
12717103 ATTGACATGCAGAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
778 ATTGGCACGCAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12717168 GTATCCCGTCTCTCTGGCCGGTGTAGTGCC-CGC-ACGCCCGCCCGCCCGCTCGTTTCGTCG
843 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCGC-CTCCGCCCGCCCG-CCGCTCGTTTGGTCG
* * * * * *
12717228 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGATGGTTGCGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCAGCAGC
12717293 A
66 A
12717294 CATGCTAGGC
Statistics
Matches: 1655, Mismatches: 182, Indels: 65
0.87 0.10 0.03
Matches are distributed among these distances:
880 2 0.00
881 288 0.17
882 3 0.00
883 2 0.00
887 1 0.00
889 1 0.00
890 2 0.00
893 2 0.00
901 7 0.00
902 338 0.20
903 122 0.07
904 85 0.05
906 1 0.00
907 11 0.01
908 452 0.27
909 3 0.00
911 333 0.20
912 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (902 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCAGCAGC
AAGATCGGAAGCACGTAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCC
GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATCACCGGAGA
ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGTTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCGCCTCCGCCCGCCCGCCGCTCGTTTGGTCG
Found at i:12717897 original size:713 final size:709
Alignment explanation
Indices: 12716519--12717998 Score: 2168
Period size: 713 Copynumber: 2.1 Consensus size: 709
12716509 CCCAGTCTAA
** * *
12716519 GCATACGGAGTTCATTCCTAGTCTTTGATCGGATCGGACTGACGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGACGGTTGCGGCAGCACATGCTAGG
* * * *
12716584 CTTGGGCATGTGCTCTTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATCGCCGGAGA
66 CTTGGGCATGTGCTCGTGCCGCATTTTTCTTCATCGGAGCACCATCG-CGGAGCATCGCCGGAGA
* *
12716649 ACCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGAGGCCTGGGGGTTGTGCGCACATAATGTG
130 ACCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGAGGCCTGGGGGGTGTGCACACATAATGTG
* * *
12716714 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 TGATGGGTGCTGCTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12716779 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
** *
12716844 GGGGACACTTTTTTCAAATGGTCACAAAATTTTGTTCACCTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATACTGTACACCTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12716909 TGCAAGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
390 TGCAAGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
12716974 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAACTTTAGAAAATCATGAAAAATAGAAAACAAGTCATCTT
12717039 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12717104 TTGACATGCAGAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGACAT-CAGAAATATGAAGAGATACCTAAACCCACCTACCACACTATCGATCCACAGCTTGCG
* *
12717169 TATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGTATAGT--------GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
12717234 TTAG
706 TTAG
* * *
12717238 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGATGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGACGGTTGCGGCAGCACATGCTAGG
* * *
12717303 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGAGCACCATCG-GGAGCATCGTCGGAGAA
66 CTTGGGCATGTGCTCGTGCCGCATTTTTCTTCATCGGAGCACCATCGCGGAGCATCGCCGGAGAA
* * * * *
12717367 CCTGACCGGTGGCATTGGGGTTCCGACGATCGGGG-GGTC-GGGGGGTGTGCACACATGATGTGT
131 CCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGAGGCCTGGGGGGTGTGCACACATAATGTGT
*
12717430 -ACTGGGTGCTGCTATTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 GA-TGGGTGCTGCTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12717494 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CTTGTAGCCATTAAAGTGTCTGAAA
260 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTC-AGTAGCCATTAAAGTGTCTGAAA
* * *
12717558 TGGGGACAGTTTTTTCAAATGGTCACAAAA-ACTGTACACTTGGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATACTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
* * * **
12717622 GTGCATGCCAACAAAAGTACAAGGATCACGTCAACCAAGTTTGGGGTGAAAACTCCTTCCAAAAA
389 GTGCAAGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* **
12717687 AATTTTAAAAAATCTCGAACC-CAAAAACTTTCA-AAAATCGTGAAAAATAGAAAACAAGTTGTC
454 AATTTTAAAAAATCTCGAACCGCAAAAACTTT-AGAAAATCATGAAAAATAGAAAACAAGTCATC
* *
12717750 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12717815 CATTGGCACAT-AGAAATATGAAGAGGTGCCTAAACCCACCTACCACACTATCGATCCACAGCTT
583 CATT-G-ACATCAGAAATATGAAGAGATACCTAAACCCACCTACCACACTATCGATCCACAGCTT
* * *
12717879 TCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGTCCGCTCGTTTGGTCGGTTGGCTTAG
646 GCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
12717943 GCATACGGAGTTCATTCCCAGTGTAAGATTGGATCGGATCGAGGGTTGCGGTAGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGACGGTTGCGGCAGCA
12717999 GGATCGGAAG
Statistics
Matches: 688, Mismatches: 68, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
705 81 0.12
713 175 0.25
714 110 0.16
715 172 0.25
716 3 0.00
717 48 0.07
719 99 0.14
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (709 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGACGGTTGCGGCAGCACATGCTAGG
CTTGGGCATGTGCTCGTGCCGCATTTTTCTTCATCGGAGCACCATCGCGGAGCATCGCCGGAGAA
CCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGAGGCCTGGGGGGTGTGCACACATAATGTGT
GATGGGTGCTGCTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATACTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGT
GCAAGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAACTTTAGAAAATCATGAAAAATAGAAAACAAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGACATCAGAAATATGAAGAGATACCTAAACCCACCTACCACACTATCGATCCACAGCTTGCGCA
TCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:12718609 original size:26 final size:26
Alignment explanation
Indices: 12718566--12718617 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12718556 TTGGGGCCTT
*
12718566 CCGGAAAAATTTTAAAAAATCCTGAA
1 CCGGAAAAAGTTTAAAAAATCCTGAA
* *
12718592 CCGGAAAAAGTTTCAAAAATCGTGAA
1 CCGGAAAAAGTTTAAAAAATCCTGAA
12718618 AAATAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.21
Consensus pattern (26 bp):
CCGGAAAAAGTTTAAAAAATCCTGAA
Found at i:12719252 original size:886 final size:891
Alignment explanation
Indices: 12717238--12730473 Score: 14521
Period size: 897 Copynumber: 14.8 Consensus size: 891
12717228 GTTGGCTTAG
* * *
12717238 GCATACGGAGTTCATTCCTAGTCTAAGATC-AGACCGGACCGATGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
12717302 GCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGAGCACCATCG--GGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAG
* * *
12717365 AACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGCACACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
12717429 -TACTGGGTGCTGCTATTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 CGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
**
12717493 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12717558 TGGGGACAGTTTTTTCAAATGGTCACAAAAAC-TGTACACTTGGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12717622 GTGCATGCCAACAAAAGTACAAGGATCACGTCAACCAAGTTTGGGGTGAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG-G---A--CCTTCC-AAAA
* * * *
12717687 AATTTTAAAAAAT-CTCGAACC-CAAAAACTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTC
446 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12717750 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * * * *
12717815 CATTGGCACATAGAAATATGAAGAGGTGCCTAAACCCACCTACCACACTATCGATCCACAGCTTT
575 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
12717880 CGCATCCCGTCTCTCTGGCCGGTATAGT----GCCCGCCCGTCCGCTCGTTTGGTCGGTTGGCTT
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
12717941 AGGCATACGGAGTTCATTCCCAGTGTAAGATTGGATCGGATCGAGGGTTGCGGTAGCAGGATCGG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATC-G
* ** * * * *
12718006 A-AGCACGCCGAGGGGGATTCAACCGATCCTCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAG
769 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
12718070 TGCCCGTACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12718127 GCGTATGAAGTTCATTCCCAGTCTAAGATC-AGACTGGACCAAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
12718191 GCTCGGGCATGTGCTGGTGCCAG-ATTATTCTTCGTCGGGGCACCGTCGTCGGAGCATCATCGGA
65 GCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGA
* * ** * * *
12718255 GAACCTGACAGGCGGCATTGGCGTTTTGACGATCAGTGGGGTCGGGGGGGTTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGG-TGTGCGCACATGAT
* * * *
12718320 GTGCAATGGGTGCTGGTACTTGGCCTTTATTTTGGGCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
12718385 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG-CAATAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
12718449 AATTGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * *
12718514 TTGTGCACACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CCTTCCGGAAAAATTT
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACCTTCC-AAAAAATTT
* *
12718578 TAAAAAATCCTGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCA
451 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
12718643 TGAAACTTCACGTGAAGGCTTAAAGGG-CCATTGTATGAATTTACAAGCCAT-AAAATGGCATTG
516 TGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** *
12718706 GCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
580 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
12718771 CCCATCTCTCTGGCCGGC-TAGTGCCTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCA
645 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
12718835 TACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGACAACAGGATCGACTGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * *** * * * *
12718900 CACAGAGGGGGACCAGGTTGATCCCCGGCATGCGCATCGCG-CCCTCTGGCCAGCTGAGCGCCCA
775 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * *
12718964 CACGCTCGTTTCATGGGTTGACTTTGTCATACGGAGTTCATTCCCAATCTTA
840 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12719016 GCATACGGAGTTCATTCCCAATCTAAGATTGAACCAGACCGAGGGTTACAGCAGCACATG-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12719080 CTTGGACATATGCTTGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* *
12719145 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAGATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
12719210 AATGGGTGCTGGGACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12719275 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * ** *
12719340 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCATTTTAAGTTTTTGGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * *
12719405 AAATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACACCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-------ACCTTCC-AAAAAA
**
12719470 TTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
448 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12719534 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12719599 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
577 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12719664 CATCCCGTCTCTCTGGCCGACTTAGTGCCCGCCCGTCTGCCCGCTCGCTCGTTTCGTCGGTTGGC
642 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** ** * * * *
12719729 TTAGGCATACGGAGTTCATTCCCAGTGTAAGATTAGACTGGACTGAGGGTTACAGCAGCAAGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATC
** * * * *
12719794 GGTAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGTCGGCTGA
768 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
12719859 GCGACCAG-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12719918 GCATACGGAGTTCATTCCCAGTCTAAGAT-TAGACCAGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** * * *
12719982 GCTCGGGCATGTGCTAGTCCCACATTTTTCTTCACCGGGGCA-CATCACCGGAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAG
* * * * *
12720046 AGCCTGACCGACGGCATTGGGGTTCTGACGAT--AGGGGGCCGGGGGGGTGTGCGCAGATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * *
12720109 GTGATGGTTGCTGGTACTTAGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12720174 CACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTCCTGCCAGTAGCCATTAAAGTGTATGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12720239 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGACA---C---TTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12720298 ATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-----A--CCTTCCAAAAA
* * ** * * *
12720363 AGTTAAAAAAATCCCAAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
447 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * **
12720428 GCCATGAAACTTCACATGAGGGCTTAAGGGACCATTGTATGAATTTACATGAAATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12720493 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTTCA
577 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12720558 CATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
642 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** ** * * * *
12720619 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGATGGAGGGATACGGCAGCAGGATCAATA
707 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * ** * *
12720684 GCACACAGAGGGGGACCCGGCCGATCCTTGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCGC
772 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
12720749 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12720804 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12720869 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGACCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * ** *
12720934 ACCTGACCGGCAGCATTGGGGTTTCGGTGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
12720999 GATGGGTGCTGGTACTTGGCACTTATATTGGCCCTCTATCCCTCATCAAACCTCCAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
12721064 CCCCCTTAAGGACCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTATGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* ** *
12721129 GTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGACTTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12721194 GCTTTCC-ACAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGACAAAACTCCTTCCAAAAAA
391 GCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGG-G----GA--CCTTCCAAAAAA
* *
12721258 GTTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
448 -TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12721323 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12721388 TTGGC--GCACGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTG
577 TTGGCATGCA--GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12721451 TGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCTGCTCATTTCGTCGGTTGGCTT
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * * * * * *
12721508 AGGCATACAGACTTCATTCCCAGCCTAAGATCAGACCGGACTGAGGGTTACAGTAGCAAGATTGG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * ** * * * * * *
12721573 CAGCACGAAGAAGGGGACCCGGTCGATCCTCGACTTACGCATCCTGCCCCTTTGGCCGGCTTAGC
770 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* ** *
12721638 ACCCGCACGCTCGTTTCGTGGGTCAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
835 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * ** *
12721695 GCTTACAGAGTTCATTCCTAGTCTAAGATCGGACTGGACTGAGGCTTCCAACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12721760 CTTGGGCATGTGCTGGTGCCGCATTTTTCTT-TTCCGGGGCACCATCGTCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGCCGGAGCATCATCGGAG
* * * * * * *
12721824 AACTTGACAGGCAGTATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCAAATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
12721889 GCGATGGGTTCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12721953 CACCCCCTGAAAGAGAATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12722018 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTG-ATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
12722082 GTGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAAGG-CCAAAATTGCTTCTGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACC----TT-C--C--AAA
* * *
12722146 AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTC
445 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12722211 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
12722276 CATTGACATGAAGAAATATGAAGATGTGCCTAAACCCACCGACCACCATATCGATCTATGGCTTG
575 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12722341 CACATCCCATCTCTCTGGCCAGCGTAGTGACCGCCCACCCACCTGCCCGCTCGTTTCGT-AG-T-
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CGC-CC-GCCCGCTCGTTTCGTCGGTTG
* * * * * * * * * *
12722403 G-ATCGG---ACCGAG-T-GTT-GCGGTAGTAGGATC--AACAG-CACGTAAAGG--G-GG-A-C
701 GCTTAGGCATACGGAGTTCATTCCCAGT-CTAAGATCGGACCAGAC-CG--AGGGTTGCGGCAGC
** * * * * * * ** ** *
12722453 CCGA-CCA-ATCACCGGC-TA-GCGCATCCCG-CC---CCTCTGGCTAACTAAGTGCCCGCACGC
762 AGGATCGACAGCA-C-GCAGAGGGGGA-CCCGACCGATCC-CCGGCTTGCGCA-T-CCCGC-CCC
** * * * * **** ** * **** * *
12722510 TCGTTTCATGGGTTAACTTAGGCATACG-GAG-TTCAT-TCCAGTCTTA-GTATACGGAGGTTCA
820 TC-TGGC-CGGCTGAGCGCCCGC--ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCA
12722571 TTCCCAGTCT--
880 TTCCCAGTCTAA
* * * * * *
12722581 --AT-----G---A-T--C-G----A-A-CCAA---G-CTGAGGGTTACAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12722622 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
** * * * * *
12722687 ACCTGACCGAAGACATTGGGGCTCCGACGATCGGGGGGGTCGGGGGGGTGTGCACACATGATCTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTG
*
12722752 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12722817 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12722882 GGGGAGACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12722947 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCTAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG------A-CCTTC-CAAAAA
* * * *
12723012 ATTTTAAAAAAT-CTCCAACCGCAAAAAGTTTCAAAAATTGTGAAAAATCGAAAACGAGTCGTCT
447 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
12723076 TGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
12723141 ACTGGTATGCAGAAATATAAAGATGTGCGTAAACCCACCTACCACCCTA-CTGATCCA-------
576 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGGCTTG
*
12723198 CG------G---CT-T-----GCGTA-T-------------CCCG-TC---TC-TCTGTTGGCTT
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
12723229 AGGCATACAGAGTTCATTCTCAGCCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAAGATCGG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * ** * *
12723294 CAGCATGCAGAGGTGGACCC-AGCCAATTCCCGGCTCACGCATCCCACCCCTCTGGCCCGCTGAG
770 CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
12723358 TGCCCACACGTTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
12723416 GCAGACGGAGTTCATTCCCAATCTAAGATC-ACATCAGATCGAGGGTTACGGTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** *
12723480 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATC-GCTGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATC-GGA
** * * * **
12723544 GAACCTGACCGATGGCATTGGGGTT-CTAGCAATCGGGGGCCGAAGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGG-GGCCGGGGGGTGTGCGCACATGAT
* *
12723608 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
12723673 CACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTACCAATTGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12723738 AATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAA-TTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *** * *
12723802 TTGTGCATGCCAATAAAAATGTGAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTATCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-----A--CCT-TCCAA
** * *** ** * *
12723867 AATTTTTTTAAAAAAACC-GAACTACAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCG
444 AA-AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
12723931 TCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGCCCATTGTATGAATTTTCAAGCCATAAAAAT
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12723996 GGCATTGGCATGCAAAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
573 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
12724061 TGCGCATCCCATCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCCCGCCCGCTTGCTCGTTTCGT
638 TGCGCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCGCCCG-CC-C--GCTCGTTTCGT
* * * * * *
12724126 CGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACC-GTACTGAAGGTTGCGGT
695 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGC
* * * ** * * *
12724190 AGTAGGATCGACAGCACGTAGAGGTGGACCC-AGCAAATGCCCGGCATGCGCATCCCGCCTCTCT
759 AGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
12724254 GGCCTGCTGAGCGCCCGTC-CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
823 GGCCGGCTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
12724318 TCTAA
887 TCTAA
* * * * * * *
12724323 GCATACAGAGTTCGTTCCCAGTCTATGATCGGACCGGACCGATGGTTGCGGCAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
12724388 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGC-TGGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * * * *
12724452 ACCTGA-CGGACGTCATTGGGGTTCCGGCGATCAGGGGGCCCGAGGGGGTATGCCCACATGATGT
131 ACCTGACCGG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* *
12724516 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12724581 CACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** ** *
12724646 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCACAAAATCTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
12724711 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG-G----A-CCTTCC-AAAA
* ** * *
12724776 AATTTTAAAAAATCAC-AAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATC
446 AATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12724840 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12724905 CTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
575 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
12724970 CGCAT-CTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATCCGCTCCTTTCGTCGGTTG
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTG
* * * **
12725034 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGCGTTGCGGTGGCAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * * * *
12725099 TTGGCAGCATGCAAATGGGGACCTGACCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCT
766 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
12725164 GAGCACCCGCACGCTTGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTGCCAGTCTAAGCAT
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGAC--T----T----AG------G-CA---T-A-C--
12725229 ATGGAGTTCATTCCCAGTCTAA
872 --GGAGTTCATTCCCAGTCTAA
*
12725251 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * *
12725316 CTCGAGCATGTGCTGGTGCTGTATTTTTTTTCGTCAAGGCACCATCACCGGAGCAACGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* *
12725381 ACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
12725446 TGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12725511 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** ** *
12725576 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCACAAAATCTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
12725641 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG-G----A-CCTTCC-AAAAA
* ** *
12725706 ATTTTAAAAAATCAC-AAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCT
447 ATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12725770 TGCCATGAAACTCCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
12725835 -TTCGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTATCGA
576 ATT-GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT---A--C---C-A-CC-CTATCGA
* * * * *
12725899 TCCACGGCTTGCACATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCTGCCCGATGTT
629 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC---GTT
* * * * * * *
12725964 TTGTCGGTTGCCTTAGACATACGGAGTTCATTCCCAGTATAAGATCAGACTAGACCGAGAGTTGC
691 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * *
12726029 GGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCTCCGGCTTACGCATCCC-CCCCT
756 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
12726093 CTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
821 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
12726158 GTCTAA
886 GTCTAA
* * * **
12726164 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCACCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12726229 CTCGGGCATGTGCTGGTGCC-AATTTTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCA-CTGG
66 CTCGGGCATGTGCTGGTGCCGCA--TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATC-GG
* * *
12726292 AGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGAGCCGGGGCGGGTTTGCGCACATGA
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGA
* * *
12726357 TGTGCGACGGGTGCTGGTACTTGGCGCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
12726422 TCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
12726487 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * ** * *
12726552 ATTTTTTGCATGCCAAGAAAAATATAAGGATCTTGTCTACGAAGTTTGGGGCCAAAACTCCATCC
385 -TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-----A--CCTTCC
* * *
12726617 GAAAAATTTTTTAAAAAT-CTCGAACCGT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
442 -AAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
12726680 TCGTCTTGCCAGGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
505 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
12726745 AATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
570 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * **
12726810 GCTTGTGCATCCCGTCTCTTTGGCCAGCATGGTGCCCGCCTACCCGCCCGCTCGTTTCGTCGGTT
635 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ** ** * *
12726875 GGCTTAGGCATACGGAGTTCATTCCCAATCTAATATCAGACCGGATTGAGGGTTATGGCAACAAG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGG
** ** * * * *
12726940 ATCGGTAGCACGCAGAGGGGGACCCGGTCGATTCCTGGCTTGCGCATCCCGCCCCTTTGGCCGGT
765 ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
12727005 TGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T--
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12727063 -C-TA---AG---A-T--C-G-----GAT-----CGGACCGAGGGTTACAGTAGCACATACCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12727106 TTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * * * *
12727171 ACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGAGTCGGGGCGGGTGTGCACACATGATAT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GGCCGGG-GGGTGTGCGCACATGATGT
* * ** ** ** * *
12727236 GCAATGGATGCTGCAACTTGGTGCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAAGTTA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12727301 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12727366 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *** *
12727431 GTGCATACCAACAAAAATACAAGGATCATGTCAAGCAAGTTCGTCGATAAAACTCCTTCCGAAAC
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT--T-G--GGGA--CCTTCC-AAAA
** * *
12727496 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGAAAACGAGTCGTCT
446 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
12727561 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
12727626 ATTAGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGC
576 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12727691 GCATCCCGCCTCTCTGGCTGGCATAGTGCTAGCCCGCACGCCCGCCCGCCCACTCGTTTCGTCGG
641 GCATCCCGTCTCTCTGGCCGGCGTA--G-T-G--C-C-CGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
12727756 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACGGAGGGTTGTGGCAGCA
698 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* ** * * *
12727821 GGATTGGTAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCGG
763 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
12727886 GTTAAGCGCCCGCATGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12727950 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACTGAGGGCTGCGGCATCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
12728014 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTC-GGG-A--A-------ACCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAG
* * *
12728068 AACCTAACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
* *
12728133 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * ** * *
12728198 ACGCCCCCTTAAAGAGGATTTGAAATTTTACAATTTTGCTGCCAGTCGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12728263 ATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12728327 TATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGGCCAAAACTCCTTCCGAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGG-----A--CCTTCC-AA
** * * * * * *
12728392 AATTTTTTTAAAAATCCTGAACCGCAAAAAGTCTCAAAAATCATGAAAAAAAG-AAACGAGTCAT
444 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
12728456 CTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
509 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12728521 GCATTGGCACGCAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
574 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * ** * *
12728586 GCGCATCTTGTCTCTCTGACCGGCATAGTGCCCGCCCGCCTACTCGCTCGTTTCGTCGGTTAGCT
639 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** ** * * * *
12728651 TAGGCATACAAAAATCATTCCCATTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCTGGATTG
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * *
12728716 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCTCACCCCTCTGGCCGG-TCGA
769 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GA
12728780 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-G----C--A--T-A----CA-T-T--
833 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12728821 G--T------TT-ATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12728877 CTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * *
12728942 ACCTGACCGGTGGTATTGGGGTTCCGACGATCGGAGGGGTCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
12729007 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12729072 ACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12729136 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * * *
12729201 TGCATGCCAAAAAAAATACAAGGATCACAACTACTAAGTTTGGGGTCAAAATTCCTTCTGAAGAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-----A--CCTTC-CAAAAA
* *
12729266 ATTTTAAAAAATGCC-GAACCGTTAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCT
447 ATTTTAAAAAAT-CCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
12729330 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAAAGGT
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12729395 ATTGGCACGCAGAAATATGAAGATGTGCCTAAAGCTACCTACCACCCTATCGATACATGGCTTGC
576 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12729460 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCACTCGTTTCGTTGGTTCGCTTA
641 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * * * *
12729525 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCTGTAGGGTTGGC
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
12729590 AGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGTCCCTCCT-GCCGACTAAGC
771 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGC
* * *
12729654 GCCCGCACACTCGTTTCGTGGGTTGACTGAGGCATGC-GAGTTCATTCCCAGTCTAA
835 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
12729710 GCATACGGAGTTCATTCCCAGTCTTAGATC-AGACTAGACCGAGGGTTGCGGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
12729774 GCTCGGGCATGTGCTGGTGCCACATTTTT-TTCGTCGGGGCACCATCGTCGAAGCATCGAT-GAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ATCGGA
* * * * ** * *
12729837 GAACCTGACCGACGGTATTAGGGTTTCGGTGATCGGGGGGGTCGGGGGGGTGTGCACACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATG
* * * * *
12729902 TACAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTAACAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12729967 ACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12730032 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12730097 GGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAACTCCTTCCGAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG----A--CCTTCC-AAAA
* ** **
12730162 AATTTTAAAAAATCCTTAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
446 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
12730227 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12730292 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
576 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
12730357 GCATCCCATCTCCCTGGCCGACGTAGTGCCCACCCGTCCGCCCGCACGCTCGTTTTGTTGGTTAG
641 GCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
12730422 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
12730474 ACGTTAGTAG
Statistics
Matches: 10555, Mismatches: 1374, Indels: 824
0.83 0.11 0.06
Matches are distributed among these distances:
819 1 0.00
820 3 0.00
821 1 0.00
822 1 0.00
823 5 0.00
824 4 0.00
826 5 0.00
827 1 0.00
828 11 0.00
829 2 0.00
830 9 0.00
831 4 0.00
832 10 0.00
833 26 0.00
834 17 0.00
835 12 0.00
836 1 0.00
837 9 0.00
838 1 0.00
841 1 0.00
842 6 0.00
845 1 0.00
846 1 0.00
847 1 0.00
848 3 0.00
853 1 0.00
854 2 0.00
855 2 0.00
857 6 0.00
858 206 0.02
859 318 0.03
860 2 0.00
862 231 0.02
863 151 0.01
864 218 0.02
865 2 0.00
866 4 0.00
867 2 0.00
868 2 0.00
869 1 0.00
871 149 0.01
872 471 0.04
873 50 0.00
874 69 0.01
875 187 0.02
876 266 0.03
877 48 0.00
878 3 0.00
879 3 0.00
880 5 0.00
881 3 0.00
882 7 0.00
883 196 0.02
884 8 0.00
885 11 0.00
886 526 0.05
887 287 0.03
888 322 0.03
889 491 0.05
890 250 0.02
891 523 0.05
892 59 0.01
893 82 0.01
894 463 0.04
895 389 0.04
896 93 0.01
897 591 0.06
898 495 0.05
899 7 0.00
900 11 0.00
901 367 0.03
902 438 0.04
903 109 0.01
904 6 0.00
905 59 0.01
906 261 0.02
907 487 0.05
908 13 0.00
909 52 0.00
911 1 0.00
912 3 0.00
913 99 0.01
914 75 0.01
915 192 0.02
916 143 0.01
917 70 0.01
918 2 0.00
919 3 0.00
922 3 0.00
923 2 0.00
924 1 0.00
928 126 0.01
929 477 0.05
930 4 0.00
932 1 0.00
933 1 0.00
934 1 0.00
937 6 0.00
938 1 0.00
939 44 0.00
940 127 0.01
941 32 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACCTTCCAAAAAATTTTAAAA
AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12719922 original size:26 final size:26
Alignment explanation
Indices: 12719892--12719944 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12719882 GTTGACTTAG
12719892 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12719918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12719944 G
1 G
12719945 ATTAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12720814 original size:26 final size:26
Alignment explanation
Indices: 12720778--12720830 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12720768 GTTGACTTAG
12720778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12720804 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12720830 G
1 G
12720831 ATCGAATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12722556 original size:26 final size:27
Alignment explanation
Indices: 12722526--12722580 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
12722516 CATGGGTTAA
12722526 CTTAGGCATACGGA-GTTCATT-CCAGT
1 CTTA-GCATACGGAGGTTCATTCCCAGT
*
12722552 CTTAGTATACGGAGGTTCATTCCCAGT
1 CTTAGCATACGGAGGTTCATTCCCAGT
12722579 CT
1 CT
12722581 ATGATCGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 8 0.31
26 11 0.42
27 7 0.27
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTTAGCATACGGAGGTTCATTCCCAGT
Found at i:12724327 original size:26 final size:26
Alignment explanation
Indices: 12724297--12724347 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12724287 GTTGACTTAG
*
12724297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12724323 GCATACAGAGTTCGTTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
12724348 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12725235 original size:26 final size:26
Alignment explanation
Indices: 12725199--12725277 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12725189 GTTGACTTTG
*
12725199 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12725225 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12725251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12725277 G
1 G
12725278 ATCGAACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12726174 original size:26 final size:26
Alignment explanation
Indices: 12726138--12726190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12726128 GTTGACTTAG
12726138 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12726164 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12726190 G
1 G
12726191 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12727953 original size:26 final size:26
Alignment explanation
Indices: 12727924--12727976 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12727914 GTTGACTTAG
12727924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12727950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12727976 G
1 G
12727977 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12733656 original size:26 final size:26
Alignment explanation
Indices: 12733620--12733672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12733610 GTTGACTTAG
*
12733620 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
12733646 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12733672 G
1 G
12733673 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12734520 original size:907 final size:887
Alignment explanation
Indices: 12732754--12735319 Score: 3280
Period size: 907 Copynumber: 2.9 Consensus size: 887
12732744 GTTGACTTAG
* * * *
12732754 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTCGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12732819 CTCGAGCAAGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGC
66 CTCGGGCAAGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGAC
*
12732884 AGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
131 AGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
12732948 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
12733013 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTT
261 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* * *
12733078 TTTCAAATGGTCACAAAATCT-T-GTACACTTCGAGTTTTGAGCTGAAATTTGTTGTGCATGCCA
326 TTTCAAATGGTCACAAAATCTGTAGTAC-CATAGAG-TTTGAGCTG-AATTT-TTCTGCATGCC-
* * * *
12733141 ACAAAAATACAAGGATGATGTCTACCAAGTTTGGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
386 ACAAAAATAAAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* *
12733206 AAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAG-AAATGAGTCGTCTTGCCATGG
450 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGA
* *
12733269 AACTTCACGTGAAGGCTTATTGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
514 AACTTCACGTGAAGGCTTA-GGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-
* * *
12733334 GCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCTG
577 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * ** * * *
12733399 TGTCTCTGGCCGACGTAATGCCCGCCCACCCGTCCA-CCCGTTC-TTTTCATCGGTTGGCTTAGG
642 TCTCTCTTGCCG-CGTAGTGCCCGCCCGTCTG-CCAGCCCGCTCGTTTT-GTCGGTTGGCTTAGG
* * * * *
12733462 CATACGGAGTTCATTCCCAGTCTAAGATTGGATCA-GACCGAGGGTTACGGTAGCAGGATTGGCA
704 CATACGGAGTTCATTCCTAGTCTAAGATT-GAACAGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* *
12733526 GCACACAGAAGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCTGCTGAGCAC
768 GCACACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * *
12733591 CCGCACACTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
833 CCGAACACTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATTACCACTCTAA
* * *
12733646 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGTGGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
12733711 CTCGGGCAAGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGAC
66 CTCGGGCAAGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGAC
12733776 AGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
131 AGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
12733841 AGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACC-CTGAGAACTCACACCCCCTTAA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAA
* *
12733905 AGAGCATTTGGGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * ** * ** *
12733970 TTTTCAAATGGAGATTTTATTAATTTTCTGGTAGTAGCCATAAAAGTGTCTGAAATGGGGACACT
325 TTTTCAAAT-G-G---TCA-CAA-AATCT-GTAGTA-CCAT-AGAGT-T-TG--A-GCTGA-ATT
* * *
12734035 TTTCT-CAAATGGTCACAAAAA-AAAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCT
374 TTTCTGC--AT-GCCACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*
12734098 AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
436 AAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
* *
12734163 CGTCTTGCCTTGAAACTTCACGCGAAGGCTTTAGGGACCATCGTATGAATTTACAAGCCATAAAA
501 CGTCTTGCCATGAAACTTCACGTGAAGGC-TTAGGGACCATCGTATGAATTTACAAGCCATAAAA
*
12734228 ATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
565 ATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
12734293 CTTGCGCATCCCGTCTCTCTTGCCAGCGTAGTGCCCGCCCGTCTGCCAGCCCGCTCGTTTTGTCG
629 CTTGCGCATCCCGTCTCTCTTGCC-GCGTAGTGCCCGCCCGTCTGCCAGCCCGCTCGTTTTGTCG
* * *
12734358 GTTCGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTTAACAGGACCGAGGGTTGCGGCAGC
693 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGAACAGGACCGAGGGTTGCGGCAGC
* *** * *
12734423 AGGATCGGTAGCATGGAGAAGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
758 AGGATCGGCAGCACACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * ** * *
12734488 GGTTGA-CGGCCCGAACGCTCGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTACCACTCTA
823 GGCTGAGC-ACCCGAACACTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATTACCACTCTA
12734552 A
887 A
* * ** * *
12734553 GCATACGCAGTTCATTCCCAATCTAAGATC-AATCTGGACTAAGGGTTCCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAA-CCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
12734617 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCAT-GCCAGAGAACCTGACCGA
65 GCTCGGGCAAGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGA
* * * * *
12734681 CGGCATTGGGGTTTCGACGATC-----GG--GGGGGGCTATGCGCATATGATGTGTGATGGGTGC
130 CAGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
12734739 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
12734804 AGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTA
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * * * *
12734869 TTTTCAAGTGGTCACAAAATCT-T-GTACACCTTGAGTTTTTAGCTGAATTTTTTTGTTCATGCC
325 TTTTCAAATGGTCACAAAATCTGTAGTAC-CATAGAG-TTTGAGCTGAATTTTTCTG--CATGCC
* *
12734932 A-ATAAAAGTAAAAGGACCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAA
386 ACA-AAAA-TAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* * * * *
12734996 AAAATCTCAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTTGTTTTGCCATGA
449 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGA
* *
12735061 AACTTCACATGAAGGCCTAAGGGACCA-CTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
514 AACTTCACGTGAAGG-CTTAGGGACCATC-GTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
12735125 -CATAGACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCC
577 GCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
12735189 GTCTCTC-TGACCGGCGTAGTGCCCGTACGCCCGCCCGTACGCCTGCCCGCCCGCTCGTTTCGTC
641 GTCTCTCTTG-CC-GCGTA------GT--GCCCGCCCGT----CTGCCAGCCCGCTCGTTTTGTC
* * *
12735253 GGTTGGCTTAGGCATACGGAGTTCATT-CTCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGCA
692 GGTTGGCTTAGGCATACGGAGTTCATTCCT-AGTCTAAGATTGAACAGGACCGAGGGTTGCGGCA
12735317 GCA
756 GCA
12735320 CATGCTGGGC
Statistics
Matches: 1466, Mismatches: 150, Indels: 112
0.85 0.09 0.06
Matches are distributed among these distances:
882 1 0.00
883 18 0.01
884 76 0.05
885 167 0.11
886 2 0.00
887 1 0.00
888 4 0.00
889 6 0.00
890 3 0.00
892 163 0.11
893 164 0.11
894 3 0.00
895 3 0.00
896 78 0.05
897 1 0.00
898 3 0.00
899 162 0.11
900 4 0.00
901 2 0.00
902 1 0.00
903 6 0.00
904 4 0.00
905 2 0.00
906 115 0.08
907 453 0.31
908 22 0.02
909 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCAAGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGAC
AGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTGTAGTACCATAGAGTTTGAGCTGAATTTTTCTGCATGCCACAAA
AATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTG
CCGCGTAGTGCCCGCCCGTCTGCCAGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCTAGTCTAAGATTGAACAGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAAGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGAACACTCATT
TAATGGGTTGACTTAGGCATACAGAGTTCATTACCACTCTAA
Found at i:12734566 original size:26 final size:26
Alignment explanation
Indices: 12734530--12734579 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12734520 GACTTAGGCG
* *
12734530 TACGGAGTTCATTACCACTCTAAGCA
1 TACGCAGTTCATTACCAATCTAAGCA
*
12734556 TACGCAGTTCATTCCCAATCTAAG
1 TACGCAGTTCATTACCAATCTAAG
12734580 ATCAATCTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
TACGCAGTTCATTACCAATCTAAGCA
Found at i:12736326 original size:701 final size:698
Alignment explanation
Indices: 12734553--12736727 Score: 2969
Period size: 701 Copynumber: 3.1 Consensus size: 698
12734543 ACCACTCTAA
* * * * * * *
12734553 GCATACGCAGTTCATTCCCAATCTAAGATC-AATCTGGA-CTAAGGGTTCCGACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGATC-GAGGGTTGCGGCAGCACATGCTG
* *
12734616 GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCAT-GCCA-GAGAACCTGACC
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CAGGAGAACCTGACC
* * *
12734679 GACGGCATTGGGGTTTCGACGATC-GGGGG---GGGCTATGCGCATATGATGTGTGATGGGTGCT
128 G-CGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGTATGCGCACATGATGTGTGATGGGTGCT
12734740 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
192 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
12734805 GAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTAT
257 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
12734870 TTTCAAGTGGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAAT
322 TTTCAAATGGTCACAAAATCTTGTACA-CTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * * * *
12734935 AAAAGTAAAAGGACCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAA
386 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAA
* * * *
12735000 TCTCAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTTGTTTTGCCATGAAACT
451 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATG-AACT
* * * *
12735065 TCACATGAAGGCCTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAT
515 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
12735128 AGACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
580 A-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
12735193 CTCTGACCGGCGTAGTGCCCGTACGCCCGCCCGTACGCCTGCCCGCCCGCTCGTTTCGTCGGTTG
644 CTCTGGCCGGCGTA------GT------GCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCAGTTG
12735258 GCTTAG
693 GCTTAG
* * *
12735264 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACTGGA-CTGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCACATGCTGG
*
12735328 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGAACCTGACCG-
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAGGAGAACCTGACCGC
* * *
12735392 GTAGCATTGGGGTTCCGACGATTGGGGGGCCAAGGGGGTGTGCGCACATGATGTGTGATGGGTGT
130 G--GCATTGGGGTTCCGACGATCGGGGGGCC-A-GGGGTATGCGCACATGATGTGTGATGGGTGC
* *
12735457 TGGTACTTGGCTCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAA
191 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
12735522 AGAGCATTTGAGCTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
12735587 TTTTCAAATGGCCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
321 TTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * ** *
12735652 CAAAAATGCAAGGATCATTTCTACC-AGCTTAGGGGAAAAAAATCCTTTCGAAAAAATTTTAAAA
385 CAAAAATACAAGGATCATGTCTACCAAG-TTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAA
* * * *
12735716 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTTTTGCCATGAAG
449 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAA-
* *
12735781 CTTCATGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
513 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
12735846 AGAAATATGGAGATGTGCCTAAACCCACC-ACCCACCCTATCGATCCACGGCTTGCGCAACCCGT
578 AGAAATATGAAGATGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
12735910 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTTGTCAGTTGGCTTAG
642 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * **
12735967 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* *
12736032 CTCGAGCATGTGCTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCGCAGGAGAACCTGACCAGC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAGGAGAACCTGACC-GC
* * *
12736096 GGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGTATGCGCACATGATGCGTGATGGGTGCTAG
130 GGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGTATGCGCACATGATGTGTGATGGGTGCTGG
* * *
12736161 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGT
194 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
12736226 GCATTTGAGATTTTACGGGTTTGGTACCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTT
259 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
12736291 TCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCT-AATTTTTTTTGTGCATGCCAACA
324 TCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACA
* * *
12736355 AGAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCCTTTCAAAAAAATTTTATAAAAT
387 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAAT
*
12736420 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTT
452 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATG-AACTT
** * * *
12736485 CACGTGAAGGCTTAAGCTACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCGTGTAGA
516 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
12736550 AATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCT
581 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
12736615 CTGGACGGTGTAGTGCCCGCCCGCCCGTCCGCCAGCTCGTTTCGTCAATTGGCTTAG
646 CTGGCCGGCGTAGTGCCCGCCCGCCCG--C-CC-GCTCGTTTCGTCAGTTGGCTTAG
* * *
12736672 GGATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCA
12736728 GGATCGGTAG
Statistics
Matches: 1303, Mismatches: 132, Indels: 64
0.87 0.09 0.04
Matches are distributed among these distances:
700 2 0.00
701 458 0.35
702 61 0.05
703 115 0.09
704 6 0.00
705 70 0.05
707 5 0.00
710 1 0.00
711 99 0.08
712 33 0.03
713 7 0.01
717 7 0.01
718 366 0.28
719 70 0.05
720 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (698 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAGGAGAACCTGACCGCG
GCATTGGGGTTCCGACGATCGGGGGGCCAGGGGTATGCGCACATGATGTGTGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
Found at i:12738385 original size:706 final size:705
Alignment explanation
Indices: 12736856--12738956 Score: 2991
Period size: 706 Copynumber: 3.0 Consensus size: 705
12736846 CCCAGTCTAA
* ** *
12736856 GCATACGGAGTTCATTCCCAGTCTATGATCAAACTGGACCGAGGGTTG-TGCAGCACATACTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACTGGACCGAGGGTTGCTGCAGCACATGCTGGG
* *
12736920 CTCGGTCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCTCTAGAGCGTCGTCGGAGA
65 CTCGG-CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA----T----CG-C--CGGAGA
12736985 ACCTGACCGACGGCATT-GGGCTTCC-GACGATCAGGGGGGTCGGGGGGGTGTGCGCACATGATG
118 ACCTGACCGACGGCATTAGGG-TTCCAG-CGATCAGGGGGGTC-GGGGGGTGTGCGCACATGATG
* *
12737048 TGCGATGGGT-TCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAACT
180 TGCGATGGGTGT-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACT
* *
12737112 CACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTCAAGTGTCTGA
244 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGA
* *
12737177 AATCGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATT
309 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATT
* *
12737242 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCTTTTCGA
374 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAACTCCTTCCGA
* * * * * * * * *
12737306 AAGAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATATAGAATGAGTCA
438 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
12737371 TCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTAAAAGCCATAAAAAT
503 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12737436 GGCACTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
568 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
12737501 TGCGCATCCCGTTTCTCTTG-CCGGCATAGTGCCCGCCCTCCCGCCTGCCCGCTCATTTCGTTAG
633 TGCGCATCCCGTCTCTC-TGACCGGCATAGTGCCCGCCCGCCCGCCTACCCGCTCATTTCGTTAG
12737565 TTGGCTTAG
697 TTGGCTTAG
* *
12737574 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGGACTGGACCGAGGGTTGCTGCAGCACATGCTGGG
* *
12737639 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCAGACCGAC
65 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGAC
* *
12737704 AGCATTAGGGTTCCAGCGATC-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGTT
129 GGCATTAGGGTTCCAGCGATCAGGGGGGTCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGTT
*
12737768 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
193 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAA
* *
12737833 GAGCATTTGAGCTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTT
* * * * * *
12737898 TTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTCAGCTGAATT-TTTTTTCCATGCCAAT
323 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAC
* * * * *
12737962 AAAAATGCAAGGATCATGTCTACCAGGTTAGGGGAAAAAACTCCTTCCGAAAAAATTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAA
*
12738027 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACT
453 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
12738092 TCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAG
518 TCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * * * * *
12738157 AAATATGGAGATGTGCCTAAAGCCACCTACCACCTTATCGATCCATGGCTTGCGTAACCCGTCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
12738222 TCTGACCGGCATAGTGCCCGCCCGCCTGCTTACCCGTTCGTTTTGTTGGTTGGCTTAG
648 TCTGACCGGCATAGTGCCCGCCCGCCCGCCTACCCGCTCATTTCGTTAGTTGGCTTAG
* *
12738280 GCATACGGAGCTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACTGGACCGAGGGTTGCTGCAGCACATGCTGGG
** *
12738345 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAGGAGAACCTGACCGAC
65 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGAC
** * * * * * *
12738410 GGCATTAGGGTTCCAATGATCGGGGGGGTCGGGGGGTATGCGGACATGATGTGGGATGGGTGCTA
129 GGCATTAGGGTTCCAGCGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTG
12738475 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAG
*
12738540 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTCAAGTGTCTGAAATGGGGACAC-TTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTT
* * * *
12738604 TTCAAATCGTCACAACATCTTGTACACTTCGAGTTTTTAGTTG-ATTGTTTTCGTGCATGCCAAC
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTT-GTGCATGCCAAC
* *
12738668 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** * *
12738733 TCTTGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCGTCTTGCCATGCAGCT
453 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
** * *
12738798 TCACGTGAAGGCTTAAGCTACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGTAG
518 TCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
12738863 AAATATGAAGATGTGCCTAAACCCATCAACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
12738928 TCTGGA-CGGCGTAGTGCCTGCCCGCCCGC
648 TCT-GACCGGCATAGTGCCCGCCCGCCCGC
12738957 TCTTTTCGTC
Statistics
Matches: 1242, Mismatches: 126, Indels: 42
0.88 0.09 0.03
Matches are distributed among these distances:
704 3 0.00
705 56 0.05
706 832 0.67
707 215 0.17
708 31 0.02
709 4 0.00
710 1 0.00
711 2 0.00
715 1 0.00
718 42 0.03
719 53 0.04
720 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACTGGACCGAGGGTTGCTGCAGCACATGCTGGGC
TCGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGACGG
CATTAGGGTTCCAGCGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GACCGGCATAGTGCCCGCCCGCCCGCCTACCCGCTCATTTCGTTAGTTGGCTTAG
Found at i:12739167 original size:26 final size:26
Alignment explanation
Indices: 12739137--12739188 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12739127 GTTGACTTAG
*
12739137 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGCCTAA
12739163 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
12739189 AACCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:12743570 original size:25 final size:25
Alignment explanation
Indices: 12743541--12743590 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
12743531 TTGACTTAGG
*
12743541 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTACCAGTCTAA
12743566 CATACGGAGTTCATTACCAGTCTAA
1 CATACGGAGTTCATTACCAGTCTAA
12743591 GATCGGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (25 bp):
CATACGGAGTTCATTACCAGTCTAA
Found at i:12744029 original size:901 final size:901
Alignment explanation
Indices: 12742625--12748190 Score: 6967
Period size: 902 Copynumber: 6.3 Consensus size: 901
12742615 TGAGTGCCAA
* * * * * *
12742625 CACGCTTGTTTCGAGGGTTGACTTAGGTACACGAAGTTCTTTCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * **
12742690 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGATTCGGGCATGTG-
66 ATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
12742754 TCGGTGTCGCATTTTTCCTCGCCGGGGCACCATCGCCG-G-A---T---AG--CCTTACC-AGCG
131 T-GGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGAGCATCGTCGGAGAACCTGACCGA-CG
* * ** *
12742808 GCATTGGGGTTCCGGCGATCAGGGGG-AAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGT
194 GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
12742872 ACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
12742937 TATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACA-TTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
12743001 CTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
389 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
** * * * *
12743066 AATACAAACATCACGTCAACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTAAAAAAATCC
454 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
12743131 TGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
519 TGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
12743196 CGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
584 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
12743261 TATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCT
649 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
12743326 GGTCGACGTAGTGCCCGCCCGCCCATCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
714 GGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAG
* * * *
12743391 TTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCCGTAGTAGGATTGACAGCACGCAGAG
779 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGTAGGATTGACAGCACGCAGAG
* * *
12743456 GAGGAC-CTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
844 GGGGACTC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
12743514 CACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-CATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
12743578 ATTACCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGC
66 ATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
12743643 TGGTGCCGCATTTTTCTTCGTCAAGGCAGCATCGCCAAAGCATCGTCGAAGAACCCGACCGACGG
131 TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCC-GAGCATCGTCGGAGAACCTGACCGACGG
* * * * *
12743708 CATTAGGGTTCCGACGATCAGGGGGGCCGGGGGGTTTGTGCACATGATGTGCAATGGGTTCTGGT
195 CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
12743773 ACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAAAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
** * * *
12743837 CCCTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
12743902 CAAATGGTCACAAAATCTTGCACATTTCGAGTTTTTACCTAAATTTTTTTGTGCATGCCAACAAA
389 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
12743967 AACACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCT
454 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-
** * * * *
12744032 CT-AATTGCAAAAAGTTTTCAAAAAAT-GTGAAAAATAGAAAACGAATCTTCTTGCCATGGAACT
518 CTGAACCGCAAAAAG-TTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
12744095 TCACGTGATGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGC-TTCGGCATACA
581 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GGCATGCA
* * *
12744159 GAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGTGAATCCCGTCT
645 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
12744224 CTCTGGTCGACATAGTGCCCGCCCGCCCTTCCACCCGCT-GATTTCATCGATTGGCTTAGGCATA
710 CTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCG-TTTCATCGATTGGCTTAGGCATA
* * * * *
12744288 CGAAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAGGGTTACAGTAGTAGGATCGACAGCACG
774 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGTAGGATTGACAGCACG
* * * * *
12744353 CAGAGGGGG-CCCGACCGATCCCCGGCTTACGCATCCCACCCCTGTGGCCGGTTGAGCGCCCG
839 CAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
12744415 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG-AT-C-G-G---
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
12744472 ------A--C------CGGACT-G----AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
66 ATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * * * *
12744518 TGGTGCCGTATTTTTCTTCATTGGGGCACCATCGTCGAAGCATC-ACTGGAGAACCTGACCGACA
131 TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCG-AGCATCGTC-GGAGAACCTGACCGACG
* * * *
12744582 GCATTGAGGTTTCGACGATCGAGGTGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGTTGCTG
194 GCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
12744647 GTACTTGGCCCTTATGTTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACA-CCCCTTAAAA
257 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
12744711 AGCACTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGCACACTTTT
322 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
12744776 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATATTTTTGTGCATGCCAACA
387 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* ** * *
12744841 AAAATATAAGGATCATATCTACCAAGTTTGGGGCC-AAACTCCATCCGAAAAAATTTTTAAAAAT
452 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** * *
12744905 CTTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGACATGAAACTT
517 CCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
12744970 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGAATTGGCATGCAAA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
12745035 AATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTGT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
12745100 CTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGTTCGTTTCATCGATTGGCTTAGGCATACGG
712 CTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGG
* * *
12745165 AGTTCATTCCCAGTCTAAGATCAGACCAAATTGAGGGTTGCAGTAGTAGGA-TCAGCAGCACGCA
777 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGTAGGATTGA-CAGCACGCA
* * ** * * *
12745229 GAGGGGGACTCGACTGATCGCCGGCTTATGCATCCCGCCCTTCTGGTCGGCTGAGCGCCCA
841 GAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
12745290 CCCGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
12745355 ATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAGCAGCACATGCTAGGCTCGGGCATGTGC
66 ATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * * * * *
12745420 TGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGACGGAGAACCAGACCGGCGG
131 TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCG-CCGAGCATCGTCGGAGAACCTGACCGACGG
* ** **
12745485 CATT-AGGTTCCGGTGATCGGGGGGGCCGGGGAGGGGGTGTGCATACATGATGTGCGATGGGTGC
195 CATTGGGGTTCCGACGATC-GGGGGGCC---G-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
12745549 TGGTACTTGGCTCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
255 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
12745614 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
320 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
12745679 TTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
385 TTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
12745743 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAA
449 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * *
12745808 AATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
514 AATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
12745873 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
579 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
12745938 AGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGGATCCCGTC
644 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * *
12746003 TCTCTACCCGACGTAGTGCCCACCCGCCTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGATTGGCT
709 TCTCTGGCCGACGTAGTG----CCCGCCCGCCCG-T---CCGCCCGCTCGTTTCATCGATTGGCT
* *
12746068 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-AATCGAGGGTTGCAGCAGTAGGA-T
766 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAGTAGTAGGATT
* *** *
12746131 CAGCAGCACGCAGAGGGGGACTCGGTTGATCTCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
830 GA-CAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
12746196 AGCGCCCG
894 AGCGCCCG
* * *
12746204 TC-CGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTT
1 -CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * ** * * * *
12746268 CATTTCCAGTCTAAGATCGGACAGGACCAAGGTTTGTGGTAGCACATTCTAGGCTCGAGCATGTG
65 CATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
* *
12746333 CTGGTGCCTCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACG
130 CTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCC-GAGCATCGTCGGAGAACCTGACCGACG
* *
12746398 GCATTGGGGTTCCGATGATCGGGGGGGCC--GGGGTGTGCGCACATGCTGTGCGATGGGTGCTGG
194 GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
12746461 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACTCCCTTAAAGA
258 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
12746526 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
323 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * *
12746591 TCAAATGGTCACAAAATCTTATACGCTTCGAGTTTTTAGCTGAACTTTTTTATGCATGCAAAAAA
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
12746656 AAATACAAGGATCATGTCTACCAA-TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT-
453 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
12746719 CTCGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTT
518 CT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
12746784 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
12746849 AATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* ** *
12746914 CTGGCCGACGTAGTGCCCGCCCG--C--CCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGG
712 CTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGG
* * ** ** * * * * * *
12746975 AGTTCATTCCCTGTCTAGGATTGGACTGGACTGAGGGTTGCGGTAGCAAGATCGGCAGCACGTAG
777 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGTAGGATTGACAGCACGCAG
* * * * * *
12747040 AGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGACTGAGCGCTCG
842 AGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
12747100 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
12747158 A----C---C----A---GACT-G----AGGGTTCCGGCAGCTCATGCTGGGCTCGGACATGTGC
66 ATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
*
12747204 TGGTGCCGCATTTTTCTTCGTCAAGGCACCAT---C--G---C--CGGAGAACCTGACCGACGGC
131 TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGAGCATCGTCGGAGAACCTGACCGACGGC
* * * *
12747259 ATTGGGGTTTCGACGATCGGGGTGGTCGGGGGGGTGTGCGCACATGATGTACGATGGCTGCTGGT
196 ATTGGGGTTCCGACGATCGGGG-GG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
12747324 ACTAT-GCCCTTATATTGGCCTCCTATCCCTTATCAAATCTCGAGAACTCACACCCCCTTAAAGT
259 ACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
12747388 GCTTTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTGTTT
323 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
12747453 TCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAA
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** ** * *
12747518 AAATACAAGGATCACGTCTACCAAGTTCAGGGTGAAAAATCCTTCCAAAAAAATTTTAAAAAAT-
453 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * ** * *
12747582 TTTAAATGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTAGCCATTAAACTTC
518 CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
12747647 ACGTGAAGGCTTAGGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGCACAT--AGA
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG-GCATGCAGA
* * *
12747710 AATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * ** * * * * *
12747775 CTGGCTGATGTAGTGCCCGCCCGTTCGCCCACCCGCTCGTTCCATCGGTTGGCTTAGGTATACGG
712 CTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGG
* * ** * ** * * *
12747840 AGTTCATTGCCTGTCTAAGATTGGACCAGACTAAGGGTTGTGGCAGCAGGATCTG-CAGCACGTA
777 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGTAGGAT-TGACAGCACGCA
** * ** *
12747904 GAGGGGGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCTACTGAGCACCCG
841 GAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
12747965 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * ** *
12748030 ATTCCCAATCTAAGATCAGACCAGATCGAA-GGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
66 ATTCCCAGTCTAAGATCGGACTGGA-CCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
12748094 CTGGTGCCGTATTTTTCTTCGCCGGGGCACCAT---C--G---C--CGGAGAACCTGACCGGCAG
130 CTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGAGCATCGTCGGAGAACCTGACCGACGG
*
12748149 CATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCA
195 CATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCA
12748191 AATGCTGCCT
Statistics
Matches: 4107, Mismatches: 445, Indels: 249
0.86 0.09 0.05
Matches are distributed among these distances:
858 4 0.00
859 38 0.01
860 1 0.00
861 85 0.02
862 336 0.08
863 40 0.01
864 1 0.00
865 190 0.05
866 3 0.00
867 2 0.00
868 1 0.00
869 1 0.00
870 58 0.01
872 1 0.00
873 7 0.00
874 271 0.07
875 230 0.06
876 253 0.06
877 2 0.00
878 2 0.00
879 3 0.00
880 7 0.00
882 1 0.00
883 1 0.00
885 1 0.00
886 4 0.00
887 1 0.00
888 100 0.02
889 47 0.01
890 20 0.00
891 104 0.03
892 2 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 181 0.04
897 10 0.00
898 2 0.00
899 26 0.01
900 80 0.02
901 318 0.08
902 367 0.09
903 11 0.00
904 88 0.02
905 160 0.04
906 222 0.05
907 1 0.00
908 235 0.06
909 234 0.06
910 10 0.00
913 3 0.00
914 316 0.08
915 22 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGAGCATCGTCGGAGAACCTGACCGACGGC
ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTG
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGTAGGATTGACAGCACGCAGAGGG
GGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
Found at i:12744928 original size:26 final size:26
Alignment explanation
Indices: 12744889--12744945 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
12744879 CTCCATCCGA
* * * **
12744889 AAAAATTTTTAAAAATCTTGAACCAT
1 AAAAAGTTTCAAAAATCATGAAAAAT
12744915 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTCAAAAATCATGAAAAAT
12744941 AAAAA
1 AAAAA
12744946 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (26 bp):
AAAAAGTTTCAAAAATCATGAAAAAT
Found at i:12745353 original size:26 final size:26
Alignment explanation
Indices: 12745316--12745368 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12745306 GTTGACTTAG
12745316 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12745342 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
12745368 G
1 G
12745369 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12746283 original size:914 final size:898
Alignment explanation
Indices: 12744441--12748190 Score: 4870
Period size: 862 Copynumber: 4.2 Consensus size: 898
12744431 GTTGACTTAG
* *
12744441 GCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
12744505 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGTCGAAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC-GGAGA
* * * *
12744570 ACCTGACCGACAGCATTGAGGTTTCGACGATCGAGGTGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
12744635 CGATGGTTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCATCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12744700 A-CCCCTTAAAAAGCACTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12744764 GGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATATTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * *
12744829 TGCATGCCAACAAAAATATAAGGATCATATCTACCAAGTTTGGGGCC-AAACTCCATCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* ** **
12744893 ATTTTTAAAAATCTTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* * *
12744958 GACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGAA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12745023 TTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12745088 CATCCCGTCTGTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGTTCGTTTCATCGATTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGC
* * *
12745153 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATTGAGGGTTGCAGTAGTAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCAGCAGCAGGATC
** * * *
12745218 AGCAGCACGCAGAGGGGGACTCGA-CTGATCGCCGGCTTATGCATCCCGCCCTTCTGGTCGGCTG
776 AGCAGCACGCAGAGGGGGACTCGATC-GATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
*** * *
12745282 AGCGCCCACCCGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12745342 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
12745407 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGACGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA-TCACGGAGA
* * ** **
12745472 ACCAGACCGGCGGCATT-AGGTTCCGGTGATCGGGGGGGCCGGGGAGGGGGTGTGCATACATGAT
130 ACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCC--GG-GGGGGTGTGCGCACATGAT
* *
12745536 GTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
12745601 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
12745666 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTGAATTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTT
* *
12745730 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGA
386 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* *
12745795 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAAAAAACGAGTCG
451 AAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
12745860 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12745925 GGCATTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCATGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* **
12745990 TGCGGATCCCGTCTCTCTACCCGACGTAGTGCCCACCCGCCTGCCCGCTCGCCCGCCCGCTCGTT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG------C-CC-G--C-C-CGCCCGCCCGCTCGTT
*
12746055 TCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAA-TCGAGGGTTG
699 TCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACT-GAGGGTTG
* * *
12746119 CAGCAGTAGGATCAGCAGCACGCAGAGGGGGACTCGGTTGATCTCCGGCTTGCGCATCCCGCCCC
763 CAGCAGCAGGATCAGCAGCACGCAGAGGGGGACTCGATCGATC-CCGGCTTGCGCATCCCGCCCC
* * * *
12746184 TCTGGCCGGCTGAGCGCCCGTCCGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
827 TCTGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
12746249 AGTCTAA
892 AGTCTAA
* * * * * ** * * *
12746256 GCATATGGAGTTCATTTCCAGTCTAAGATCGGACAGGACCAAGGTTTGTGGTAGCACATTCTAGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
12746321 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA-CGGAGA
* * *
12746386 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCC---GGGGTGTGCGCACATGCTGTG
130 ACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
12746448 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12746513 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12746578 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACGCTTCGAGTTTTTAGCTGAACTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12746643 TGCATGCAAAAAAAAATACAAGGATCATGTCTACCAA-TTTGGGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * *
12746707 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* *
12746772 GCCGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12746837 TTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** *
12746902 CATCACGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAG
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAG
* * ** *** * * * *
12746967 GCATACGGAGTTCATTCCCTGTCTAGGATTGGACTGGACTGAGGGTTGCGGTAGCAAGATCGGCA
715 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCAGCAGCAGGATCAGCA
* * * *
12747032 GCACGTAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGACTGAGCGC
780 GCACGCAGAGGGGGACTCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
*
12747097 TCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12747152 G-AT-C-G-G---------A--C------C--A---GACTGAGGGTTCCGGCAGCTCATGCTGGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* **
12747191 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCA---TC---G---C-CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACGGAGAA
* * * * *
12747246 CCTGACCGACGGCATTGGGGTTTCGACGATCGGGGTGGTCGGGGGGGTGTGCGCACATGATGTAC
131 CCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
12747311 GATGGCTGCTGGTACTAT-GCCCTTATATTGGCCTCCTATCCCTTATCAAATCTCGAGAACTCAC
196 GATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12747375 ACCCCCTTAAAGTGCTTTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12747440 GGGGACACTGTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGTTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** ** *
12747505 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGTGAAAAATCCTTCCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * * *
12747570 ATTTTAAAAAATTTTAAA-TGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTA
455 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* * *
12747634 GCCATTAAACTTCACGTGAAGGCTTAGGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12747699 TTGCACAT--AGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGC
585 TTG-GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
12747762 GCATCCCATCTCTCTGGCTGATGTAGTGCCCGCCCGTTCGCCCACCCGCTCGTTCCATCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC---CGCCCGCCCGCTCGTTTCATCGATTGG
* * * ** * * **
12747827 CTTAGGTATACGGAGTTCATTGCCTGTCTAAGATTGGACCAGACTAAGGGTTGTGGCAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCAGCAGCAGGAT
* * * *
12747892 CTGCAGCACGTAGAGGGGGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCTACTG
775 CAGCAGCACGCAGAGGGGGACTCGATCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTG
*
12747957 AGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12748017 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAAGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
12748082 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCA---TC---G---C-CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACGGAGAA
* * * *
12748137 CCTGACCGGCAGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGGTGTGCGCA
131 CCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCA
12748191 AATGCTGCCT
Statistics
Matches: 2533, Mismatches: 256, Indels: 131
0.87 0.09 0.04
Matches are distributed among these distances:
859 43 0.02
861 81 0.03
862 336 0.13
863 41 0.02
864 4 0.00
865 192 0.08
866 2 0.00
867 2 0.00
868 1 0.00
869 1 0.00
870 60 0.02
873 1 0.00
875 1 0.00
878 1 0.00
880 1 0.00
881 1 0.00
883 1 0.00
886 1 0.00
888 1 0.00
890 22 0.01
891 102 0.04
892 1 0.00
893 1 0.00
895 2 0.00
896 188 0.07
897 3 0.00
898 1 0.00
900 1 0.00
901 33 0.01
902 115 0.05
903 5 0.00
904 81 0.03
905 160 0.06
906 222 0.09
908 240 0.09
909 236 0.09
910 1 0.00
912 1 0.00
913 4 0.00
914 322 0.13
915 21 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACGGAGAA
CCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCAGCAGCAGGATCAGCAG
CACGCAGAGGGGGACTCGATCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12748020 original size:26 final size:26
Alignment explanation
Indices: 12747991--12748043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12747981 GTTGACTTAG
*
12747991 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12748017 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12748043 G
1 G
12748044 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12748817 original size:26 final size:26
Alignment explanation
Indices: 12748777--12748829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12748767 GCCGACTTAG
* **
12748777 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
12748803 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
12748829 G
1 G
12748830 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:12749705 original size:26 final size:26
Alignment explanation
Indices: 12749675--12749727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12749665 GTTGACTTAG
*
12749675 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12749701 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12749727 G
1 G
12749728 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12750541 original size:26 final size:26
Alignment explanation
Indices: 12750505--12750557 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12750495 GTTGACTTAG
*
12750505 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12750531 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12750557 G
1 G
12750558 ATTGGACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:12751445 original size:26 final size:26
Alignment explanation
Indices: 12751409--12751461 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12751399 GTTGATTCAG
12751409 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12751435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12751461 G
1 G
12751462 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12752342 original size:26 final size:26
Alignment explanation
Indices: 12752306--12752358 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12752296 GTCGACTTAG
12752306 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12752332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12752358 G
1 G
12752359 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12753053 original size:896 final size:894
Alignment explanation
Indices: 12749770--12755233 Score: 6696
Period size: 895 Copynumber: 6.1 Consensus size: 894
12749760 GCTGGGCTCG
* * *
12749770 GGCATTGGGGTTCCGGTGAT-AGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTG
1 GGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * ** *
12749834 GTATTTGGCCCTTATATTGGCCCACTATCCCTTGTCAAACCTTGAGAACTCACACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* **
12749899 AGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCCAAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTT
* *
12749964 TTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * ** * *
12750029 AAAATACAAGGATCACGTATACCAAGTTTGGCAAGAAAACTCCTTCTGAAAAAATTTTCAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
*
12750094 CCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
326 CCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * * ***
12750159 CACGTGAAGGCTTAAGGGACCGTTGTATGAATTTGCAAGCAATAAGAATGGAATTAAAATGCAGA
391 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
12750224 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTCGCGCATCCCGTCTCT
456 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
12750289 CTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
521 CTGGCCGGCGTAGT----G--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *
12750354 AGTTAATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGTGGCACGCAA
578 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAG
* * * * * * ** **
12750419 AGGGGGACCCGACCGATCGTTGGCTTACTCATCCCGTCCCTCTGGCCTCCTGAATGCCCGCACGC
643 AGGGGGACCCGACTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
12750484 TCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
708 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
12750549 CAGCCTAAGATTGGACGGGACCGAGGGTT-ACGATAGCACATGCTGGGCTTGGGCTTGTGCTTGT
773 CAGTCTAAGATCGGACCGGACCGAAGGTTCA-G-CAGCACATGCTGGGC-T---C--GGGCATGT
* * ** * *
12750613 GCTGGTGCCGCATTTTTGTTCGTCGGGGCACCATCGTCGGACCATCACCGGAGAACCTAACCGAC
830 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGAC
* *
12750678 GGCATTGGGGTTCCGGCGAT-GGTGGGGTC-GGGGGGTGTACGCACATGATGTGCGATGTGTGCT
1 GGCATTGGGGTTCCGGCGATCGG-GGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* ** * * * *
12750741 AGTACTTGGTGCTTGTATTGGCCCCCTATCCGTGATCAAATCTCGAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
12750806 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTT
* *
12750871 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
12750936 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAA
260 AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * *
12751001 TCCCCAACTGCAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACT
325 TCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
12751066 TCATGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGTAG
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
12751131 AGATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
12751196 TCTGGCCTGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGT
520 TCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
*** ** * * * ***
12751261 TCATTAATAGT-TGAAGATTGGACCAGACTGAGGGTTGCAGTAGTAGGATCGATAGCACATGGAG
581 TCATTCCCAGTCT-AAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAG
* * * * * *
12751325 GGGAACTCG-GTCGATCCTCGGCTTGCACATCCCGCCCTTCTGGCCGGCTGAGCGTCCGCACGCT
645 GGGGACCCGACT-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
12751389 CATTTCGTAGGTTGA-TTCAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
709 CATTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * ** *
12751453 CAGTCTAAGATCAGACCGGACC-AAGGGTTACAGCAGCACATGCTGGGTTCGATCATGTGCTGGC
773 CAGTCTAAGATCGGACCGGACCGAA-GGTT-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * ** * * * *
12751517 GTCACTTTTTTCTTCACCGGGGCACCATCAGCGGAGCATCGCCGGAGAACCTGATCGGC
836 GCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGAC
** * * * *
12751576 TACATTGGGGTTTCGACGATCGGCGGGGTC-GGGGGGTGTGCGGACATGATGTGCGAAGGGTGCT
1 GGCATTGGGGTTCCGGCGATCGG-GGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
12751640 GGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
12751705 GAGC-GTTCATGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACT
130 GAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-TAAATGGGGACACT
* * *
12751769 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGATTTTTTTTGTGCAAGCCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
12751834 AAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAAAATTTAAAAA
258 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTT-TAAA
* * * *
12751899 AAATTCAGAACCGTAAAAGGTTTTC-AAAATCATGAAAAATA-AAATACGAGTCGTCTTGCCATA
322 AAATCCCGAACCGTAAAAAG-TTTCGAAAATCATGAAAAATAGAAA-ACGAGTCGTCTTGCCATG
* *
12751962 AAACTTCTCGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
385 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
12752027 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATTGATCCACGACTTGCGCAACCC
450 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * * *
12752092 TTTTCTCTGGTCAGCATAGTGCCCGCCCACCTGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAG
515 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
12752157 TTTATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGTAGTAGTAGGATCGGTAGCACGGAGAG
580 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAG
* * * *
12752222 GGGGACCCGGCTGATCGC-CGGCTTGCGCATCCCACCCCTCTGGCCGGTTCAGCGCCCGCACGCT
645 GGGGACCCGACTGATC-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
12752286 CATTTTGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
709 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * **
12752351 AGTCTAAGATCGGATCGGACAGAAGGTTGTAGTAGCCCATGCTACGCTCGGGCATGTGCTGGTGC
774 AGTCTAAGATCGGACCGGACCGAAGGTT-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** * **
12752416 CACATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCATTGGAGAACCGGACCGGT
838 CACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGAC
* * * * *
12752473 GGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATATGCGAAGGCTGCT
1 GGCATTGGGGTTCCGGCGATCG-GGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
12752538 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACGCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
12752603 GAGCA-TTCATGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTT
130 GAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTT
* ** *
12752667 TTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-TTTTTTTTTGTGCAAGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * **
12752731 AAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTTCTTCCGAATGAATTTTGAAAA
259 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTT-AAAA
* * *
12752796 AATCCCGAACTG-CAAAAGCTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
323 AATCCCGAACCGTAAAAAG-TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
** *
12752860 ACTTTGCGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
387 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
12752925 CAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCAAGCGATCCGCGGCTTGCGCATCTCGT
452 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
12752990 CTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
517 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * * * *
12753055 CATTCCTAGTCTAAGATCAGACC-GAACCAAGGGTTGTGGTAGCAAGATTGGCAGCATG-ATGAG
582 CATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCA-GAG
* * * * * *
12753118 GGCGACCCAACCGATCCCCGGCTTGTGCATCCCGCCCCTC-GGCTGGCTGAGCGCCCGCACGCTC
645 GGGGACCCGACTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * ** *
12753182 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATAGAGTTCATTCCCG
710 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
12753247 GTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGAGCC
775 GTCTAAGATCGGACCGGACCGAAGGTT-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *** * * **
12753312 GCA-TTTTCTTCGTCGGGGCACGATCGTTGGAGCATCGCCGGAGAATCTGACTAAC
839 ACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGAC
* *
12753367 GGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGCGTGTGCGCACATGATGTGCGATGGGTG
1 GGCATTGGGGTTCCGGCGATC-GGGGGGTC-GGGGGG-GTGTGCGCACATGATGTGCGATGGGTG
* * *
12753432 CTGGCACTTGGCCCTTATATTGG-----------TCATTAAACCTTGAGAACTCACACCCCCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
12753486 AAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAAATGGAGACAC
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT-AAATGGGGACAC
12753550 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
192 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*** ** * * *
12753615 AAAAAAAATACAAGGATCATAACTAAAAAGTTTGGCACCAAAAATCATTCCGAAAAAATTTTAAA
257 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAA
* *
12753680 AAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
322 AAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
12753745 ACTTCACGTGAAGGCTTAAGGGACCATTTTGTGAATTTAGAAGCCATAAAAATGGCATTGGCATG
387 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *** *
12753810 CAAAAATATGAAGATGTGCCTAAATGTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
452 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
12753875 CTTTCTGGCTGGCGTAGTGCCCGCCTGCCCGTCCGTCCGTTCATTTCGTCGGTTGGCTTACGTAT
517 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-T-CG----TTTCGTCGGTTGGCTTAGGCAT
* ** * * * ** *
12753940 ACGGAGTTCATTCCCAGTCTAAGATTAGATTAGACTGAGGGCTGCGGTAGCAGGATCGACAGCGC
574 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGGTAGCAC
* * * * * * *
12754005 GCAGAGGGGGACCCGACTGATCCTGGGCTTACGCATCCCGCCCCTCTAGCTGGTTGAGTGCTCGC
639 GCAGAGGGGGACCCGACTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* ** **
12754070 ACGCTCGTTTCGTGGGCCGACTTAGGCATACGGAGTTCATTCTTAGTCTAAGCATACGGAGTTCA
704 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
12754135 TTCCCAGTCTAAGATAGGACCGAACTG-AGGATTACGGCAGCACATACTGGGCTCAGGCATGTGC
769 TTCCCAGTCTAAGATCGGACCGGACCGAAGG-TT-CAGCAGCACATGCTGGGCTCGGGCATGTGC
* * * **
12754199 CGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGT
832 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGAC
* * * * * * *
12754262 GGCATTGGGGTTCCGACGATCTGGGGGCCGGGGGGGTGTGCACAAATGAGGTGTGATGGGTGCTG
1 GGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
12754327 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
12754392 ACCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTT
* *
12754457 TTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAAAA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * * * * *
12754522 AAAATACAAGCATCATGTCTACCAAGTTTGGGGCTAAAAATCCTTTCAAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * * *
12754587 CCTGAACCGTAAAAAGTTTCGAGAATCTTAAAAAATAGAAAACAAGTCGTCTCGCCATGAAACTT
326 CCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
12754652 CACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
391 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
12754717 AATATGAAGATGTGCCAAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCT
456 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * ** ** *
12754782 CTAGCCGGCTTAGTGCCTGCCCGCCTACTCGTTTTATCGGTTGGCTTAGGCATACGAAGTTCATT
521 CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
12754847 CCCAGTCTAAGATCGGATC-GAACCGAGGGTTGCAGTAGCAGGATCGGTAGCATGCAGAGGGGGA
586 CCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGA
** ** * * * *
12754911 CCCGA-TCGATCCTCGGCTTGCGCATCCTACCCCTCTAACCGGTTGAGCGGCTGTACGCTCATTT
650 CCCGACT-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTT
* * * *
12754975 CATGGGTTGACTTAGGCATACGTAGTTCATTGCCAGTCTGAGCATACGGAGTTCATTCCCAGTCT
714 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
12755040 AAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTTGCGCATGTGCTGGTGTCACAA
779 AAGATCGGACCGGACCGAAGGTT-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
* * *** *
12755105 TTTCCTTCATCGGGGCACCATCACCGGAGCATCGTAGGAGAACCTCACCGAC
843 TTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGAC
* * * * *
12755157 GGCATTGGGGTTTCGACGATCGGGGGGTCGGGGCGGGTGTGCGCACATGACGTGCGACGGGTGGT
1 GGCATTGGGGTTCCGGCGATCGGGGGGTCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCT
*
12755222 GCTACTTGGCCC
65 GGTACTTGGCCC
12755234 GCATACGGAG
Statistics
Matches: 3930, Mismatches: 559, Indels: 146
0.85 0.12 0.03
Matches are distributed among these distances:
884 2 0.00
885 322 0.08
886 75 0.02
887 1 0.00
888 1 0.00
889 2 0.00
892 45 0.01
893 114 0.03
894 205 0.05
895 523 0.13
896 460 0.12
897 368 0.09
898 225 0.06
899 140 0.04
900 141 0.04
901 192 0.05
902 5 0.00
903 412 0.10
904 221 0.06
905 1 0.00
906 1 0.00
908 468 0.12
909 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
GGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGAC
CCGACTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCGGACCGAAGGTTCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
TCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGAC
Found at i:12754131 original size:26 final size:26
Alignment explanation
Indices: 12754095--12754147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12754085 GCCGACTTAG
**
12754095 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12754121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12754147 G
1 G
12754148 ATAGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12755020 original size:26 final size:26
Alignment explanation
Indices: 12754990--12755039 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12754980 GTTGACTTAG
* *
12754990 GCATACGTAGTTCATTGCCAGTCTGA
1 GCATACGGAGTTCATTCCCAGTCTGA
12755016 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
12755040 AAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:12755263 original size:26 final size:26
Alignment explanation
Indices: 12755234--12755286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12755224 TACTTGGCCC
*
12755234 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
12755260 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
12755286 G
1 G
12755287 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:12755423 original size:244 final size:242
Alignment explanation
Indices: 12754990--12755454 Score: 619
Period size: 244 Copynumber: 1.9 Consensus size: 242
12754980 GTTGACTTAG
* * * * *
12754990 GCATACGTAGTTCATTGCCAGTCTGAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGATCGGAC
* * * * *
12755055 CGAGGGTTACGGCAGCACATGCTGGGCTTGCGCATGTGCTGGTGTCACAATTTCCTTCATCGGGG
66 CAAGGGTTACAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTCCTTCATCGGGG
* * * *
12755120 CACCATCACCGGAGCATCGTAGGAGAACCTCACCGACGGCATTGGGGTTTCGACGATCGGGGGGT
131 CACCATCACCAGAGCATCGCAGGAGAACATCACCGACGGCATTGGGGTTTCGACGATCGGGGGGG
*
12755185 CGGGGCGGGTGTGCGCACATGACGTGCGACGGGTGGTGCTACTTGGCCC
196 C-CGG-GGGTGTGCGCACATGACGTGCGACGGGTGGTGCTACTTGGCCC
*
12755234 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGATCGGAC
* * ** * * *
12755299 CAAGGGTTGCAGCAGCACATTCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
66 CAAGGGTTACAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTCCTTCATCGGGG
** * * *
12755364 CACCATTGCCAGAGCATCGCCGGAGAACATGACC-AGCGGCATTGGGG-TTCTATCGATCGGGGG
131 CACCATCACCAGAGCATCGCAGGAGAACATCACCGA-CGGCATTGGGGTTTCGA-CGATCGGGGG
*
12755427 GGCCGGGGGTGTGCGCACATGATGTGCG
194 GGCCGGGGGTGTGCGCACATGACGTGCG
12755455 CTGGGTACTG
Statistics
Matches: 190, Mismatches: 29, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
242 21 0.11
243 7 0.04
244 162 0.85
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.23
Consensus pattern (242 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGATCGGAC
CAAGGGTTACAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTCCTTCATCGGGG
CACCATCACCAGAGCATCGCAGGAGAACATCACCGACGGCATTGGGGTTTCGACGATCGGGGGGG
CCGGGGGTGTGCGCACATGACGTGCGACGGGTGGTGCTACTTGGCCC
Found at i:12756158 original size:26 final size:26
Alignment explanation
Indices: 12756128--12756180 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12756118 GTTAACTTAG
12756128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12756154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12756180 G
1 G
12756181 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12757024 original size:242 final size:242
Alignment explanation
Indices: 12756599--12757058 Score: 701
Period size: 242 Copynumber: 1.9 Consensus size: 242
12756589 AAACTCCTAC
12756599 CAAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAG
1 CAAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAG
* * *
12756664 TCATCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATCGTATGAATTTACAAGCCATAAA
66 TCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATCGTATGAACTTACAAGCCATAAA
* * *
12756729 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
131 AATGGCATTGGCATGCAGAAATAAGAAGATATGCCAAAACCCACCTACCACCCTATCGATCCACA
*
12756794 GCTTATGCATCCCGTCTCTCTGGCTGGCGTATTGCCCGTCCTCCTTT
196 GCTTACGCATCCCGTCTCTCTGGCTGGCGTATTGCCCGTCCTCCTTT
* * ** *
12756841 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAATAA-AGAAAATGA
1 CAAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCACGAAA-AATAGAAAACGA
** * *
12756905 GTTGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATGA
65 GTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATCGTATGAACTTACAAGCCATAA
12756970 AAATGGCATTGGCACAT-CA-AAATAAGAAGATATGCCAAAACCCACCTACCACCCTATCGATCC
130 AAATGGCATTGG--CATGCAGAAATAAGAAGATATGCCAAAACCCACCTACCACCCTATCGATCC
** *
12757033 ATGGCTTGCGCATCCCGTCTCTCTGG
193 ACAGCTTACGCATCCCGTCTCTCTGG
12757059 TAGTGCCCGC
Statistics
Matches: 196, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
242 189 0.96
243 4 0.02
244 3 0.02
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (242 bp):
CAAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAG
TCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATCGTATGAACTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATAAGAAGATATGCCAAAACCCACCTACCACCCTATCGATCCACA
GCTTACGCATCCCGTCTCTCTGGCTGGCGTATTGCCCGTCCTCCTTT
Found at i:12757293 original size:25 final size:25
Alignment explanation
Indices: 12757265--12757312 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
12757255 GTTAACTTCG
*
12757265 GCATACGGAGTTCATTCCTAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
12757290 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
12757313 TAAGATCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:12760603 original size:26 final size:26
Alignment explanation
Indices: 12760567--12760619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12760557 GTTGACTTAG
*
12760567 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12760593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12760619 G
1 G
12760620 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12760811 original size:12 final size:12
Alignment explanation
Indices: 12760794--12760827 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
12760784 GTGCTGGTAC
*
12760794 TTGGCCCTTATA
1 TTGGCCCCTATA
12760806 TTGGCCCCTATA
1 TTGGCCCCTATA
12760818 TTGGCCCCTA
1 TTGGCCCCTA
12760828 ATCCCTCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.32, G:0.18, T:0.35
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:12760993 original size:890 final size:863
Alignment explanation
Indices: 12758083--12762229 Score: 4826
Period size: 890 Copynumber: 4.7 Consensus size: 863
12758073 GCAGCACGTA
* *
12758083 GAGGGCACCATCG-TCGGAGAACCT-AGCCGACGGCATTGGGATTTCGACGATCGGGGGGCCGGG
1 GAGGGCACCATCGCTCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGACGATC-----G-C-GG
12758146 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
58 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * ** *
12758211 ATGAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTATTGGTTTGCTGCTA-TA
123 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
12758275 GCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
188 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
12758340 TTTTTAGCTGATATT-TTTTATGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGG
253 TTTTTAGCTGA-ATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * * *
12758404 GCCAAAACTGCTTCCAAAAAAATTTTAAAAATTCCTGAACAACAAAAAGTTTCAAAAATCATGAA
317 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATCGTGAA
* ** *
12758469 AAATAGAAAACGAGTTGTCTTGCCATGAAACTTCTTGTGAAGGCTTAAGGGACCATTGCATGAAT
382 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
12758534 TTACAA-CTGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
447 TTACAAGC-GATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
12758598 CCCTATCAATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCTGACCTCTCAC-CC
511 CCCTATCAATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CACC-CGCCCGCC
* * * * *
12758662 -ATTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGA
574 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGA
* ** * * *
12758726 GGGTTGGGGCAGCAGGATCGACAGCACACAGAAGGGAACCCAGCCGATCCCCGGCTTGCGCATCC
639 GGGTT---G--GTA-G---GACAGCATGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCC
*
12758791 CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC-T-----T--AG-G--C
695 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-TTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * ** *
12758845 A-T---A-C-G-T-AGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCTTCACCT
759 ATTCCCAGCTGCTAAGTTCATTCCCAGTCTAAGATCG-ATCGGACCGAGGGTTACGGCAGCACAT
* *
12758902 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTT
823 GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* *
12758943 G-GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGAGGTTCCGACGATCAT
1 GAGGGCACCAT---C---GC-T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC--
12759007 TGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
54 ----G-C-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
12759072 CCTATCCCTCTTCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTAAGATTTTATAGGTTT
113 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
12759137 GCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGT
178 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
12759201 ACACTTCGACTTTTTAGCTG-ATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTTTACC
243 ACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * * *
12759265 CGGTTTGGGGCCTAAACTGCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAATTTTCAAA
308 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAA
* *
12759330 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCAT
373 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * **
12759395 TCTATGAATTTACGAGCGATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
438 TGTATGAATTTACAAGCGATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
*
12759460 ACCTACCACCCTATCAATCCACATCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGACCG
503 ACCTACCACCCTATCAATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-A---
* *
12759525 CCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATC-
564 CCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * *
12759589 AGACTGGATCGAGGGTTGGGGTAGCAGGATTGATAGCATACAGAGGGGGACCCGACCGATCCCCA
628 A-ACCAGATCGAGGGTT--GGT---A-G---GACAGCATGCAGAGGGGGACCCAACCGATCCCCG
* * *
12759654 GCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
683 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-TTTCGTGGGTTGACTTAGG
* * *
12759719 CATACGGAGTTCATTCCCAG-T-CTAAG---ATT----G-----GA-C---CGGACCGATGGTTG
747 CATACAGAGTTCATTCCCAGCTGCTAAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTA
* ** * * * * *
12759766 TGATAGCACCTGCTGGCCTCGGGCATGTGCTGGTGCCCCATTTTTCTTTGTC
812 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * **
12759818 GA-GGTACCATCG-TCGGAGAACCTGATCGACGGCATAAGGGTTCCGACGATCAGGGGGGTCGGG
1 GAGGGCACCATCGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC------G-CGGG
* *
12759881 GGTGTACCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
59 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
12759946 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
124 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
12760011 CCATTAAAGTGTCTGAAAAGGGGACACCTTTTTT-AAATGGTCACAAAATCTTGTACGCTTCGAG
189 CCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
12760075 TTTTCAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
253 TTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** *
12760140 CCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACTATAAAAAGTTTCAAAAATCGTGAAA
318 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATCGTGAAA
* *
12760205 AATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATT
383 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
12760270 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACC
448 TACAAGCGATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** ** * * * *
12760335 CTATCGGTTTACGGCTTGCGTATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGCTCGCT
513 CTATCAATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGC-CGCT
*
12760400 CGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGA-CTGAGG
577 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATC-GAGG
12760464 GTT-GT-GG-CAGCATGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
641 GTTGGTAGGACAGCATGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
** * *
12760526 CCGGCTGAGCGCTTGTACGCT-TATTCTGTGGGTTGACTTAGGCATACAGAGTTCATTGCCAGTC
706 CCGGCTGAGCGCCCGCACGCTCT-TTC-GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG-C
12760590 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCT
768 T--GC-TA---AGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTACGGCAGCACATGCT
* *
12760655 GGGATCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC
826 GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC
*
12760693 -AGGACACCATCGTCGGAGCATCGCCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATC-
1 GAGGGCACCA---TC---GC-T---CGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCG
* **
12760755 CGGGTGTGTGCGCACATGATGTGTTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATATT
55 CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG---C------
*
12760820 GGCCCCTAATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGCTTTTTA-
111 --CCCCT-ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG-ATTTTAC
12760884 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
172 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
12760949 TCTTGTACACTTCGAGTTTCTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGACCACG
237 TCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
12761014 TCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGT
302 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGT
** *
12761079 TTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
367 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* ** *
12761144 GACCATTGTATGAATTTACGAGCGATAAAAATGGCATTGGCACATAGAAATATGAAGAAGTGCCT
432 GACCATTGTATGAATTTACAAGCGATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
*
12761209 AAACCCACCTACCACCCTATCAATCCACATCTTGCGCATCCCGTCTCTCCT-GCCGACGTAGTGC
497 AAACCCACCTACCACCCTATCAATCCACGTCTTGCGCATCCCGTCTCT-CTGGCCGACGTAGTGC
* * * *
12761273 CCGACCGCCCGCCCGCCTGCTCGTTTCATCGATCGGCTTACGCATACGGAGTTCATTCCCAGTCT
561 CC-A---CCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
*
12761338 AAGATCGAACCAGA-CTGAGGGTTGCGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACCG
621 AAGATCGAACCAGATC-GAGGGTT--GGT---AGGA-C---AGCATGCAGAGGGGGACCCAACCG
* * *
12761402 ATCCCCGGCTTGCGTATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTG
676 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-TTTCGTGGGTTG
** * *
12761467 ACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
740 ACTTAGGCATACAGAGTTCATTCCC-AGCT--GC-TA---AGTTCATTCCCAGTCTAAGATC-GA
* *
12761532 TCGGACCGAGAGTTACGGCAGCACATGCTGGGCTC-AGGCATCTGCTGGTGCCGCATTTTTCTTC
797 TCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTC
12761596 G-C
861 GTC
* * * * *
12761598 TAGGGCACCATCGCT-AGAGAACCTGACCGACGGCATTTGGGTTATGACGATCGGGAGGCCTGGG
1 GAGGGCACCATCGCTCGGAGAACCTGACCGACGGCA-TTGGGGT-T-CCGA-C--GA----T-CG
*
12761662 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATC
55 C-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
12761727 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCC
119 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
12761792 AGTAGCCATTAAATTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAATATCTTGTACACTT
184 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
12761857 CGAGTTTTTTGCTGATTTCTTTTGTGCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
249 CGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * **
12761922 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAAACGTAAAAAGTTTTGAAAATCGT
314 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATCGT
*
12761987 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTG
379 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
12762052 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
444 AATTTACAAGCGATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
12762117 CA-CCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCC
509 CACCCTATCAATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG--C-CC
*
12762181 TGCCCGCTCGTCTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
571 -G-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
12762230 CCTCAGCATA
Statistics
Matches: 2869, Mismatches: 267, Indels: 267
0.84 0.08 0.08
Matches are distributed among these distances:
847 1 0.00
848 3 0.00
849 99 0.03
850 1 0.00
851 1 0.00
853 1 0.00
854 1 0.00
855 2 0.00
858 4 0.00
859 9 0.00
860 2 0.00
861 73 0.03
862 3 0.00
863 123 0.04
864 105 0.04
865 273 0.10
867 2 0.00
869 4 0.00
870 305 0.11
871 204 0.07
872 5 0.00
873 4 0.00
874 4 0.00
875 273 0.10
876 1 0.00
878 52 0.02
879 1 0.00
880 2 0.00
881 3 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 35 0.01
887 1 0.00
889 15 0.01
890 397 0.14
891 13 0.00
892 2 0.00
893 2 0.00
894 78 0.03
895 104 0.04
896 374 0.13
897 8 0.00
898 3 0.00
899 2 0.00
900 2 0.00
901 4 0.00
903 3 0.00
905 4 0.00
906 201 0.07
907 4 0.00
908 51 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (863 bp):
GAGGGCACCATCGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGCGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCG
ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAAT
CCACGTCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGGTAGGA
CAGCATGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCTGCTAAGTTCATT
CCCAGTCTAAGATCGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGT
GCCGCATTTTTCTTCGTC
Found at i:12761502 original size:26 final size:26
Alignment explanation
Indices: 12761473--12761525 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12761463 GTTGACTTAG
*
12761473 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12761499 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12761525 G
1 G
12761526 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12763150 original size:26 final size:26
Alignment explanation
Indices: 12763114--12763164 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12763104 TTGACTTAGT
12763114 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
12763140 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
12763165 GATCAAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:12764936 original size:26 final size:26
Alignment explanation
Indices: 12764906--12764958 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12764896 GTTGACTTAG
* *
12764906 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12764932 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12764958 G
1 G
12764959 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12765657 original size:904 final size:899
Alignment explanation
Indices: 12762193--12765860 Score: 5091
Period size: 904 Copynumber: 4.1 Consensus size: 899
12762183 CCCGCTCGTC
* * *
12762193 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTCAGCATACGGAGTTCATTCCCAGTC
1 TCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * * *
12762258 TAAGATCGGACCGGACCGAGGGTTAC-GACACCACATGTTAGGCTCGGGCATGTGCTGGTGCTAC
66 TAAGATCGAACCAGACCGAGGGTTACAG-CAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCAC
* ** * * * *
12762322 ATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACTGGCGGTATTGGGGT
130 ATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGT
* * * *
12762387 TTCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTACGGTGGGTGCTGGTACTTGGCC
195 TCCGACGATCGGGGGGGC--CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
12762452 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGTG
258 CTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
12762517 ATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGT
323 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
12762582 CCCAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTCCATGCCAA-AAAAAGTACAA
388 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAA
* *
12762646 GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCG
452 GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCAAACCG
* * * * * * *
12762711 CAAAAATTTTTGAATATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
516 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAG
*
12762776 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
581 GCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* **
12762841 ATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT
646 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * *
12762906 GTAGTGCCCGCCTGCCCGCCCGCACGCTCGTTTCTTCGGTTGACGTAGGCATATGGGGTTCATTC
711 GTAGTGCCCGCCTGCCCG-CCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
12762971 CCAATCTAAGATCAGACCAAATCAAGGGTTGCGGCAGCAGGATTGATAGCACACAGAAGGGGACC
774 CTAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATTGACAGCACACAGAAGGGGACC
* * *
12763036 CGATCGATACCC-AGCTTGCGCATCCCGCCTCTCTGGCCGACTGAGCGCCCGCACCCTCATT
839 CGATCGAT-CCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* * *
12763097 TCGTCGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAACCATATGGAGTTCATTCCCAGTC
1 TCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * *
12763162 TAAGATCAAACCAGACTAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
66 TAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACA
* ** * *
12763227 TTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTT
131 TTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTT
* *
12763292 CCGACGAT-TGAGGGGCCGGGGTGTGTGCGCACAT-AGTGTGCGATGGGTGCTGGTACTTGGCCC
196 CCGACGATCGGGGGGGCCGGGG-GTGTGCGCACATGA-TGTGCGATGGGTGCTGGTACTTGGCCC
12763355 TTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
259 TTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
12763420 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
324 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
12763485 ACATAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-AAGG
389 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-G
* * *
12763549 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT
453 GATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCAAACCGT
* * *
12763614 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
517 AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGG
**
12763679 CTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
582 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
12763744 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGCCGACG
647 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * *
12763809 TAGTG---TCC--CCCGCC-CC-CTAGTTTCGTCGATTGGCTTAGGCATA-GGCAGTTCATTGCC
712 TAGTGCCCGCCTGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATT-CC
* * * * ***
12763866 -AGTCTAAGATCAGACCATA-CTGAGGGTTGTGGCAGCAGGATAGACAACATGTA-AAGGGGGAC
775 TAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATTGACAGCACACAGAA-GGGGAC
* * **
12763928 CCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTTGTT
838 CCGATCGATCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* * * * *
12763990 TCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTCAGCATATGGACTTCATTCCCAGTT
1 TCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * ** * * *
12764055 TAAGATCGAACCGGATCGAGGGTTGCAGCAGCACATGCTGCTCTTGGGCATGTACTAGTGCCAGA
66 TAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACA
* *
12764120 TTTTTCTTGC-CCGGGGCACCATTGCCGGAGCATCACCGGAGAACTTGACCGGCGGCATTAGGGT
131 TTTTTCTT-CACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGT
** *
12764184 TCCGGGGATC-AGGGGGCCGGGGG-GATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
195 TCCGACGATCGGGGGGGCCGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * *
12764247 ATATATTGGTCCC-TGTCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
259 TTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
12764311 TTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
324 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
12764376 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATACCAAAAAAAATACAAGG
389 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
*
12764441 ATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTA
454 ATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCAAACCGTA
* * *
12764506 GAAAGTTTTAAAAATCATGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACCTGAAGGA
518 AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGC
* *
12764571 TTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAC
583 TTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
12764636 GTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCCTCCTGTCTCTCTGGCCGACGT
648 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
12764701 AGTGCCCGCCTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCT
713 AGTGCCCGCCTGCCCG-CCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
* * * * *
12764766 AGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATTGGCAGCACACAG-AGGTGGACCG
776 AGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATTGACAGCACACAGAAGG-GGACCC
* * * **
12764830 GATCGATCCTCGA-CTTGTGCCTCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTTGTT
840 GATCGATCC-CGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* * * *
12764890 TCGTGGGTTGACTTAGGCATATGGAGTTCGTTCCCAGTCTAAGCATACGGAGTTCATTCCCGGTC
1 TCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
12764955 TAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTAGTGCCGCA
66 TAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACA
* * ** * * *
12765020 TTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGTCGTAGAACTTGATCGGCGGCATTAGGGTT
131 TTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTT
* *
12765085 CTGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCT
196 CCGACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
12765150 TATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACCCCCCCTTAAAGAGCATTTGAGAT
260 TATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
12765215 TTTGCAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
325 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
12765280 CAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGA
390 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
12765345 TCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCAAAAAATTTTTTAAAAAATCCCAAACCGTG
455 TCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA--TTTTAAAAAATCCCAAACCGTA
* *
12765410 AAAAGTTTTGAACATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGC
518 AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGC
*
12765475 TTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGAT
583 TTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* *
12765540 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCATCCCGTCTCTCTGGCCGGCGT
648 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * *
12765605 AGTGCCCGCCTGCCTGCCTGTCTGTTTGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCT
713 AGTGCCCGCCTGCCCGCC-G-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
** * * * * ** * *
12765670 AGTCTAAGATTGGAGCAGACCGAGGGTTGCGGAAGTAGGATTGGTAGCACGCAGAAAGGGA-CCG
776 AGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATTGACAGCACACAGAAGGGGACCCG
* * * *
12765734 AACCGATCCTTGA-CTTGCGCATCCCGCCCCTCTGGTCGGCTTAGCGCCCGCACGCTCATT
841 -ATCGATCC-CGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* * * *
12765794 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGTGTTCATTCCCACTC
1 TCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
12765859 TA
66 TA
12765861 CTAAACCCAC
Statistics
Matches: 2467, Mismatches: 255, Indels: 84
0.88 0.09 0.03
Matches are distributed among these distances:
890 3 0.00
891 411 0.17
892 58 0.02
893 312 0.13
894 6 0.00
895 1 0.00
896 6 0.00
897 6 0.00
899 9 0.00
900 304 0.12
901 18 0.01
902 516 0.21
903 220 0.09
904 594 0.24
905 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
TCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACA
TTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTT
CCGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCAAACCGTAAAA
AGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGCTTA
AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
GCCCGCCTGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
AAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATTGACAGCACACAGAAGGGGACCCGATCGA
TCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
Found at i:12765840 original size:26 final size:26
Alignment explanation
Indices: 12765810--12765860 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12765800 GTTGACTTAG
*
12765810 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
12765836 GCATACGGTGTTCATTCCCACTCTA
1 GCATACGGAGTTCATTCCCACTCTA
12765861 CTAAACCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:12766162 original size:26 final size:26
Alignment explanation
Indices: 12766126--12766178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12766116 GTTGACTTAG
*
12766126 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
* *
12766152 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
12766178 G
1 G
12766179 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:12767051 original size:26 final size:26
Alignment explanation
Indices: 12767021--12767073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12767011 GTTGACTTCG
12767021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12767047 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12767073 G
1 G
12767074 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12767955 original size:475 final size:477
Alignment explanation
Indices: 12767049--12767996 Score: 1282
Period size: 475 Copynumber: 2.0 Consensus size: 477
12767039 CAGTCTAAGC
* * * * *
12767049 ATATGGATTTCATTCCCAGTCTAAGATCGGATAGGACCAAGGGTTGCGACAGCAGATGCTGGGCT
1 ATATGGAGTTCATTCCAAGTCTAAGATAGGACAGGACCAAGGGTTGCGACAGCACATGCTGGGCT
* * ** *
12767114 CGGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCACCGAAGCATCGCCGGAGAAC
66 CAGGCATGTGCTGGTGCCGCATTTTTCTTACTCGGGGCACCATCACCGAAGCATCACCGGAGAAC
* * * *
12767179 CTGACCGACGACATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGACGACATTGGGGTTCCAATGATC---GGAG-C-GGGGGTGTGCGCACATAATGTGCAA
*
12767244 TGGGTGCTTGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACC
191 TGGGTGCTGGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACC
* * * * * *
12767309 CCCTTAATGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTTTCTGAAATGGG
256 CCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTAAAATGGG
* * * *
12767374 GACAATTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAATTTTTTTGTGC
321 GACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGC
** *
12767439 ATGCCAAAAAAAAGTACAAGGATCACGTCTACAACTTTGGGGCTGAAACTCCTTTCGAAAA-AAT
386 ATGCCAAAAAAAAGTACAAGGATCACGTCTACAACTTTGGGGCAAAAACTCCTTCCGAAAATAAT
12767503 TTTAAAAAATCTTGAACCACAAAAAAA
451 TTTAAAAAATCTTGAACCACAAAAAAA
* *
12767530 ATATGGAGTTCATTCCAAGTCTAAGATAGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCT
1 ATATGGAGTTCATTCCAAGTCTAAGATAGGACAGGACCAAGGGTTGCGACAGCACATGCTGGGCT
* * * *
12767595 CAGGCATGTGCTGGTGCCGTATTTTTCTTCACT-GGGGCACCATCGTCTG-AGTATCACCGGAGA
66 CAGGCATGTGCTGGTGCCGCATTTTTCTT-ACTCGGGGCACCATC-ACCGAAGCATCACCGGAGA
* * **
12767658 ACCTGATCGGC-AGCATTGGGGTTTTTAATGATC-GAG-GGGGGTGTGCGCACATAATGTGCAAT
129 ACCTGACCGACGA-CATTGGGG-TTCCAATGATCGGAGCGGGGGTGTGCGCACATAATGTGCAAT
* *
12767720 GGGTGCTGGTACTTGGC-CTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
192 GGGTGCTGGTACTTGGCGC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACC
*
12767784 CCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGG
256 CCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTAAAATGGG
* ** *
12767849 GACACTTTTTTCAAATGGTCACAAAATCTTGTGGACTTCAAATTTTTGGCTGAATTTTTTTGTGC
321 GACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGC
** * ** *
12767914 ATGGTAACAAAAA-TACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAATAT
386 ATGCCAAAAAAAAGTACAAGGATCACGTCTA-CAACTTTGGGGCAAAAACTCCTTCCGAAAATAA
12767978 TTTTAAAAAATCTTGAACC
450 TTTTAAAAAATCTTGAACC
12767997 GTAAAAAGTT
Statistics
Matches: 409, Mismatches: 51, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
474 18 0.04
475 233 0.57
476 20 0.05
478 2 0.00
480 1 0.00
481 124 0.30
482 11 0.03
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (477 bp):
ATATGGAGTTCATTCCAAGTCTAAGATAGGACAGGACCAAGGGTTGCGACAGCACATGCTGGGCT
CAGGCATGTGCTGGTGCCGCATTTTTCTTACTCGGGGCACCATCACCGAAGCATCACCGGAGAAC
CTGACCGACGACATTGGGGTTCCAATGATCGGAGCGGGGGTGTGCGCACATAATGTGCAATGGGT
GCTGGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTT
AAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTAAAATGGGGACAA
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAAGTACAAGGATCACGTCTACAACTTTGGGGCAAAAACTCCTTCCGAAAATAATTTTAA
AAAATCTTGAACCACAAAAAAA
Found at i:12768430 original size:26 final size:26
Alignment explanation
Indices: 12768400--12768452 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12768390 GTTGACTTAG
12768400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12768426 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12768452 G
1 G
12768453 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12768609 original size:13 final size:13
Alignment explanation
Indices: 12768591--12768624 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
12768581 GGGCCGGGGG
*
12768591 GGTGTGTGCACAT
1 GGTGTGCGCACAT
12768604 GGTGTGCGCACAT
1 GGTGTGCGCACAT
*
12768617 GATGTGCG
1 GGTGTGCG
12768625 ATGGGTGCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.18, G:0.41, T:0.26
Consensus pattern (13 bp):
GGTGTGCGCACAT
Found at i:12769352 original size:26 final size:26
Alignment explanation
Indices: 12769316--12769368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12769306 GTTGACTTAG
*
12769316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
12769342 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12769368 G
1 G
12769369 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:12770239 original size:26 final size:26
Alignment explanation
Indices: 12770203--12770255 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12770193 GTTGACTTAG
12770203 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12770229 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12770255 G
1 G
12770256 ATAGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12770563 original size:883 final size:884
Alignment explanation
Indices: 12767530--12771904 Score: 5029
Period size: 883 Copynumber: 4.9 Consensus size: 884
12767520 CACAAAAAAA
* *
12767530 ATATGGAGTTCATTCCAAGTCTAAGATAGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCT
1 ATATGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
12767595 CAGGCATGTGCTGGTGCCGTATTTTTCTTC-ACTGGGGCACCATCGTCTGAGTATCACCGGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAA
* * * ** * *
12767659 CCTGATCGGCAGCATTGGGGTTTTTAATGATCGAGGGGGGTGTGCGCACATAATGTGCAATGGGT
130 CCTGATTGGCGGCATT-GGG--TCT-CCGA-CGA------TGTGCGCACATGATGTGCGATGGGT
* *
12767724 GCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
184 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
12767789 AAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACAC
249 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
** * * * * **
12767854 TTTTTTCAAATGGTCACAAAATCTTGTGGACTTCAAATTTTTGGCTGAATTTTTTTGTGCATGGT
314 TTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
* * *
12767919 AACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAATATTTTTAA
379 AACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAA
* *
12767984 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
442 AAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
12768049 AACTTCACGTGGAGGCTTAAGGGACCATTGTACGAATTTACATGCCATAAGAATGGCATTGGCAT
507 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
12768114 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCG
572 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
12768179 TCTCCCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGTTCCTTTCATTGGTTGGCTTAGGCA
637 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * * * *
12768244 TAAGGAGTTCATTCCTAGTCTAAGCTC-GAACCGGATCGAGGG-T-CGTGCTAGCAGGATTGCCA
702 TACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAGACCGAGGGTTACG-GC-AGCAGGATCGGCA
* * * * * * * * *
12768306 GCACGCATAGGGGGACCCGGCCGATCCCCAGCTTTCGCATCCCGCCCCTCTGGTCGGCTAAGCGC
764 ACACGCAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-AC
* *
12768371 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
828 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
*
12768428 ATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
1 ATATGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
12768492 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCCTCGTCGGAGAACCTGACTGACG
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG---C--A-T--C-
* * ** * *** * ** *
12768557 ACATTGGGGTTCC-GACAATTGGGGGGGCCGGGGGGGTGTGTGCACATGGTGTGCGCACATGATG
121 AC--CGGAGAACCTG---ATT--GGCGG-C-ATTGGGTCTCCG-AC--GATGTGCGCACATGATG
* *
12768621 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAAGCTCGAGAACTC
174 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12768686 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAA
239 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
12768751 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTTGAGTTTTTAGCTGAATTTTTT
304 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTT
* * * * ** **
12768816 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAATTAATTCAAAAA
369 TTTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** ** *
12768881 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACAAGTCGTC
433 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
12768946 TTGCCATGAAACTTCA-GTGAAGGCTTAAGGAAACATTATATGAATTTACAAGCCATAAAAATGG
498 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12769010 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC-GCTGACCACCGTATCGATCCATGACTT
563 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTT
* *
12769074 GCGCAT-CCATCTCTCTGGCCGGCATAATGCCCGCTCGCCCCACTGCCCGCCCT-CCCGCCCGCT
627 GCGCATCCCGTCTCTCTGGCCGGCGT-A-----G-T-G--CC-C-GCCCG-CCTGCCCGCCCGCT
* *
12769137 CGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
679 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGG
* * * * * * * * *
12769202 TTATGGCAGCAGGAACGGTAGCACACAAAGGGAGACCCGATCGATCCCCGGCTTGTGCATCCCAC
744 TTACGGCAGCAGGATCGGCAACACGCAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * *
12769267 CCTTCTAGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
809 CCCTCTGGCCGGCTGAG-ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
12769332 CCCAGTCTAAGC
873 CCCAATCTAAGC
* * * * *
12769344 ATATGGAGTTCATTCCCAGCCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCT
1 ATATGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * *
12769409 CGGGCAAGTGCTGGTTCCGCATTTTTCTTCGTCGGGGCATCATC-ACTGGAGAACCTGACCGGCG
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAG--CATCACCGGAG
**** * * * * * * ** *
12769473 GTGTTGGGGTT-CCGACGATCGAGGGGCT--G-GGGGGTGCGCACATGATGTGCGATGCGTGCTG
128 AACCT--GATTGGCGGC-AT--TGGGTCTCCGACGATGTGCGCACATGATGTGCGATGGGTGCTG
** * * *
12769534 GTACTTGAACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCATACCCCCTTAAAG
188 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
12769599 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTT
253 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
12769664 TTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAGA
318 TTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
* ** * * *
12769729 AAAATACAAGGATCACGTCTATCGAGTTTGGGGAAAAAACTTCTTCTGAAAAAATTTGAAAAAAT
383 AAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
12769794 CCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
447 CCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
12769859 CACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGACATTGGCACACAGA
512 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
12769924 AATATGAAGAGGTGACTAAACCTACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
577 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
12769989 CTGGTCGGCGTAGTGCCCGCCCGCCTGCCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATACGG
642 CTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * * * *
12770054 AGTTGATTCCCAGTGTAAGATTAGACCAGACCGAGGGTTGCGGCAGCATGATCGGCAACACGTAG
707 AGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAACACGCAG
* * * *
12770119 AGGGAGACCCGATCGATCCTCGGCTTGCGTATCCCGCCCCTCTGGCTGGCTGAG-CCCGCACGCT
772 AGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGACCCGCACGCT
12770183 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
837 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
* ** * *
12770231 ATATGGAGTTCATTCCCAATCTAAGATAGGATTGGACCAAGGGTTACGGCAGCACATGCTGGGCT
1 ATATGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
**
12770296 CGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG-CGGAGCATCACCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
* * *
12770360 CTGATTGGCGGCATTGGGTCTCCGACGATGTGCGCAGATGATGTGCAATGGTTGCTGGTACTTGG
131 CTGATTGGCGGCATTGGGTCTCCGACGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
12770425 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCATAAAAAGCATTTG
196 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
12770490 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
261 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
12770555 GCCACAAAATCTTGCAAACTTCGAGTTTTTATCTAAATTTTTTTGTT-CATGCCAA-AAAAACTA
326 GTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTT-TTGCATGCCAACAAAAA-TA
*
12770618 CAAGGATCACGTCTACGAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
389 CAAGGATCACGTCTAC-AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
** *
12770683 CCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
453 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
12770748 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
518 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * ** *
12770813 AAGATGTGCTTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCATTCTCTCTAGCC
583 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
12770878 GGCGTA--G--CGACCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
648 GGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * ** *
12770938 TTCCTAGTCTAAGATCAGACCGGACCGATGGTTACGGTAGCAGGATCGATAGA-ACACAGAGGTG
713 TTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCA-ACACGCAGAGG-G
* * * *
12771002 -GACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGACCCGCAGGCTCG-T
776 AGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGACCCGCACGCTCGTT
*
12771065 TCTGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTATGCATACAGAGCTCATTCC
841 TC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCA----AT-C-T--A-AG-------C
* * * *
12771126 TAGTTTATGCATACAGAGTTCAATCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAC
1 -A---TATG------GAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCAC
* * *
12771191 ATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
56 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* ** * *
12771256 GCCGGAGAACCTGACCGGCGGCATTTGTGT-TCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCG
121 ACCGGAGAACCTGATTGGCGGCA-TTGGGTCT-C--CGA-C-GA-------------TGTGCGCA
* *
12771320 CATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCC
167 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
12771385 AGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGT
232 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* ** * *
12771450 GCCTGAAATGGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGGTG
297 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAAC-TTCGAGTTTTTAGCTG
* *
12771514 -ATTTTTTTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTA
361 AATTTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTC
* * * **
12771578 CTTCCGAAAAAATTTTAAGAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
424 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
**
12771643 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTTA
489 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
12771708 TAAAAAAGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATT
554 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
12771773 CACGGCTTGCGCATCCCGTCTCTCTGGGCGGTGTAGTGCCCGCCCG--T--CCGCCCGCTCGTTT
619 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTT
* * * * *
12771834 CATCGGTTGGCTTAGCCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAAGGTTGCG
684 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACG
12771899 GCAGCA
749 GCAGCA
12771905 CATGCTGGGC
Statistics
Matches: 2976, Mismatches: 382, Indels: 211
0.83 0.11 0.06
Matches are distributed among these distances:
878 131 0.04
879 57 0.02
880 5 0.00
881 1 0.00
882 12 0.00
883 449 0.15
884 12 0.00
885 1 0.00
886 4 0.00
887 155 0.05
888 5 0.00
889 137 0.05
890 1 0.00
891 2 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 1 0.00
898 102 0.03
899 329 0.11
900 104 0.03
901 18 0.01
903 4 0.00
904 21 0.01
905 198 0.07
906 102 0.03
907 262 0.09
908 1 0.00
909 10 0.00
910 3 0.00
911 8 0.00
912 5 0.00
913 4 0.00
914 6 0.00
915 4 0.00
916 284 0.10
917 6 0.00
918 1 0.00
922 1 0.00
923 9 0.00
924 428 0.14
925 83 0.03
926 1 0.00
928 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
ATATGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
CTGATTGGCGGCATTGGGTCTCCGACGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACA
AGGATCACGTCTACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG
CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
CTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAACACGCAGAGGGAGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGACCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
Found at i:12771111 original size:26 final size:26
Alignment explanation
Indices: 12771082--12771158 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
12771072 GTTGAATTAG
*
12771082 GCATACGGAGTTCATTCCCAGTCTAT
1 GCATACAGAGTTCATTCCCAGTCTAT
* * *
12771108 GCATACAGAGCTCATTCCTAGTTTAT
1 GCATACAGAGTTCATTCCCAGTCTAT
*
12771134 GCATACAGAGTTCAATCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
12771159 AGATCGGACC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAT
Found at i:12772568 original size:262 final size:260
Alignment explanation
Indices: 12772101--12772593 Score: 729
Period size: 262 Copynumber: 1.9 Consensus size: 260
12772091 AAACCTCGAG
12772101 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCATTAAACTGTC
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCATTAAACTGTC
* * *
12772166 CGAAATGGGGATAGTTTTTTCAAATGGACACAAAATCTTGTACACTCCGATTTTTTAGCTGATTT
66 CGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTCCGAGTTTTTAGCTGATTT
* * *
12772231 TTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACTAAGTTTGGAGCCAAAAATCCTTCCG
131 TTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCCG
*
12772296 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTATAGGTTTGCTGGTAAAATTCAGCTAAA
196 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTATAGGTTTGCTGGTAAAATTCAGCTAAA
* * * * *
12772361 AACTCACACCGCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG-CTAGTAGCCGTTAAAGTG
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTC-AGTAG-CATTAAACTG
* * *
12772425 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-GAA
64 TCCGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTCCGAGTTTTTAGCTG--
* * * * **
12772489 ATTTTTTTGTGCACGCCATAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCTAACCTCCT
127 ATTTTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCT
* *
12772554 TCCGAAATAATTTTAAAAAGTCCCGAACCGTAAAAAGTTT
192 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
12772594 AGAAAATCAT
Statistics
Matches: 206, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
259 1 0.00
260 49 0.24
261 63 0.31
262 93 0.45
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (260 bp):
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCATTAAACTGTC
CGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTCCGAGTTTTTAGCTGATTT
TTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCCG
AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTATAGGTTTGCTGGTAAAATTCAGCTAAA
Found at i:12774646 original size:26 final size:26
Alignment explanation
Indices: 12774616--12774668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12774606 GTTGACTTAG
12774616 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12774642 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12774668 G
1 G
12774669 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12776355 original size:15 final size:15
Alignment explanation
Indices: 12776332--12776362 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12776322 TTGATTTAGG
*
12776332 CATATGGAGTTCATT
1 CATACGGAGTTCATT
12776347 CATACGGAGTTCATT
1 CATACGGAGTTCATT
12776362 C
1 C
12776363 CCAGTCTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (15 bp):
CATACGGAGTTCATT
Found at i:12776742 original size:885 final size:881
Alignment explanation
Indices: 12774732--12779198 Score: 5487
Period size: 885 Copynumber: 5.1 Consensus size: 881
12774722 TCCAGTGATA
12774732 GGGGGTCGGGGGGGTGTGC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
1 GGGGGTCGGGGGGGTGTGCGA-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
**
12774796 CCCCTATCCCTTTTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
65 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
12774861 TTGCTGCCAGTAGCCATTAAAGTGTCCGAAATAGGAACACTTTTTTCAAATGGTCACAAAATCTT
130 TT-CTGCCA-TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
12774926 CTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTATA
193 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* ** * * * *
12774991 CCAAGTTTGCGGAGAAAACTCCTTCTGAAAAAATTTTCAAAAATCCCGAACCGTAAAAAGTTTCG
258 CCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
12775056 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
323 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * * ***
12775121 GTTGTATGAATTTGCAA-CCAATAAGAATAGAATTAAAATGCAGAAATATGAAGATGTGCCTAAA
388 ATTGTATGAATTTACAAGCC-ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
12775185 CCCACCTACCACCCTATCGATCAACGGCTCGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCAC
452 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
12775250 CCGCCTTCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTAATTCCCAATCTAAGA
517 CCGCC-TGCCG-CCGCT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
12775315 TCAGACC-GAACTGAAGGTTACGGTAGCAGGATCGGTAGCATGCAAAGGGGGACCCGACCGATCC
579 TCAGACCAG-ACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCC
* * ** *
12775379 TCGGCTTACTCATCCCACCCCTCTGGCCTCCTGAGCGCCCGCACACTCGTTTC---G-TG----G
643 TCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGATTAG
* * * * *
12775436 GTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAGGGTTGCAATAGC
708 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGC
* * * * *
12775501 ACATGCTGGGCTCGGGCTTGTGCTTGTACTGGTGCCGCATTTTTGTTCGTCGGGGCACCATCGTC
773 ACATGCTGGGCTC--G---AT-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC
* * *
12775566 GGACCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGG
832 GGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGG
* * * * *
12775616 GGGGG-CTGAGGGGGGTGTACGCACATGATGTGCGATGTGTGCTAGTACTTGGCACTTATATTGG
1 GGGGGTC-G-GGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
12775680 CCCCCTATCCGTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGG
64 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
12775745 TTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
129 TTT-CTGCCA-TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
*
12775810 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCT
192 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
** * * *
12775875 ATGAAGTTTGGGGCCAAAAATCCTTCCGAAAAAGTTTTAAAAAATCCCCAACCGCAAAAAGTTTC
257 ACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
12775940 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
322 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
12776005 CATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTCCCTAAA
387 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
12776070 CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGT
452 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
12776135 CCGCCTGCCCGACCGCTAGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCACAATCGAAGA
517 CCGCCTG-CCG-CCGCT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * ** * * * * *
12776200 TTGGACCAGATTGAGGTTTGCAACAGTAGGATCGATAGCACACAGAGGGGAACTCGACCGATCCT
579 TCAGACCAGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCT
* * * *
12776265 CGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCGTAGGTTGATTTA
644 CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGA-TTA
* ** * * *
12776330 GGCATATGGAGTTCATTCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTAC
707 GG--T-T-GACTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
** * **
12776395 AACAGCACATGCTGGGCTCGATCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACC
767 AGTAGCACATGCTGGGCTCGATCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC
*
12776460 GGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTTCGACGATCGG
832 GGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGG
* *
12776510 CGGGGTC-GGGGGGTGTGCGAACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGTCGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
** * *
12776574 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC-GTTCATGATTTTACAGG-
66 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA-GATTTTACAGGT
* * *
12776637 TT-TG-C-T-GCC-TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGT
130 TTCTGCCATAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
12776697 ACAATTCGAGTTTTTAGCTGATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACC
195 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * * * **
12776762 AAGTTTGGGGCCAAAACTCCTGCCGAAAAAATTTTAAAAAAATTCAGAACCGTAAAAGGTTTTTA
260 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAA
* * * * *
12776827 AAATCATGAAAAATAGAATACGAGTCGTCTTGCCATAAAACTTCTCGTGAAGGCTTAAGGGAGCG
324 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
12776892 TTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
389 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * * *
12776957 CACCTACAACCCTATTGATCCACGGCTTGCGCAACCCTTCTCTTTGGCCGGCATAGTGCCCGCCC
454 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * *
12777022 GCCT-AC-TCG-T-TTT-GTCGGTTGGCTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
519 GCCTGCCGCCGCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * * * * *
12777082 CCAGACCAAGGGTTGTAGCAGCAGGATCGGTAGCATGGAGAGGGGGACCAGGCTGATCGTCGGCT
584 CCAGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGGCT
12777147 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT--T-G-TG----GGTTGAC
649 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGATTAGGTTGAC
*
12777204 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCCCATGC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCACATGC
** ** * * * **
12777269 TATGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGTACCATCACCGGAGCATCACCG
779 TGGGCTCGATCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* *
12777334 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
844 GAGAACCTGACCGACGACATTGGGGTTCCGACGATCGG
* * * * * *
12777372 GGGGG-CCGGGGGGTGTGCGCACATGATGTGCAAAGGCTGCTGGTACTTGGCCCTTATATCGGCC
1 GGGGGTCGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
12777436 CCCTATCCTTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
66 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
12777501 TGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTG
131 T-CTGCCA-TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *** *
12777566 TACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AGGATCATAACTAA
194 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* ** * * *
12777630 AAAGTTTGGCACCAAAAATCATTTCGAAAAAATTTTAAAAAAT-CTGAACCGTAAAAAGTTTCAA
259 CAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
*
12777694 AAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
324 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * * *
12777759 TTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAAAAATATGAAGATGTGCCTAAACG
389 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
12777824 TACCTACCACCCTATCGATCCACGTCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCC
454 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* *
12777889 GCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATC
519 GCCTG-CCGC-CGCT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** *
12777954 GGATCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGGACCCGACCGATCC-CG
581 AGACCAGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTC-
* * * * * *
12778018 GGCTTACGCATCCCGCCCCTCTAGCCGGTTGAGTGCTCGCACGCTCGTTTCGTGGGCCGACTTAG
645 GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT--G--G--TT-G
* * * *
12778083 TTATACGAAGTTCATTCTTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAAC
703 AT-TA-G--GTTGA--CTTAG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * ** *
12778148 CGAGGATTGCGGTAGCACATACTGGGCTC-AGGCATGTGCTGGTGCTTCATTTCTCTTCGTCGGG
757 CGAGGGTTGCAGTAGCACATGCTGGGCTCGA-TCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
12778212 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGG
821 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGG
* *
12778273 GGGGGCCAGGGGGGGTGTGCGCAA-ATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
1 GGGGGTC-GGGGGGGTGTGCG-AACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
12778337 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTATAGG
64 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
12778402 TTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
129 TTT-CTGCCA-TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
12778467 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAATACAAGCATCACGTCT
192 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * *
12778532 ACCAAGTTTGGGGCTAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
257 ACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * * * *
12778597 GAGAATCGTGAAAAATAGAAAACAAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGAC
322 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
12778662 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCAAAA
387 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
12778727 CCCACCTATCACCATATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
452 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * **
12778792 CCGCCTG-C-TCG-T-TTT-ATCAGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCA
517 CCGCCTGCCGCCGCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
12778852 GATCGGACCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGG
582 GACCAGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGG
* * * * * * *
12778917 CTTGCGCATCCTACCCCCTCTAGCCAGCTGAGCGGCCGTA---T-G-TTCGT--TT-AATGGGTT
647 CTTGCGCATCCCA-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGATTAGGTT
* * * * *
12778974 GACTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCACA
711 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCACA
* * * * **
12779039 TGCTGGGCTTG-TGCATGTGCTGGTGTCACAATTTCCTTCACCGGGGCACCATCGTCGGAGCATC
776 TGCTGGGCTCGAT-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
*** * * *
12779103 GTAGGAGAACCTCACTGACGACATTGGGGTTTCGACGATC-G
840 ACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGG
* * * * *
12779144 GGGGGTCGGGGCGGGTGTGCGCACATGACGTGCGACGGGTGGTGCTACTTGGCCC
1 GGGGGTCGGGG-GGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCC
12779199 GCATACGGAG
Statistics
Matches: 3092, Mismatches: 410, Indels: 175
0.84 0.11 0.05
Matches are distributed among these distances:
861 1 0.00
862 257 0.08
863 9 0.00
864 1 0.00
865 2 0.00
866 1 0.00
867 196 0.06
868 8 0.00
869 43 0.01
870 96 0.03
871 45 0.01
872 139 0.04
873 1 0.00
874 4 0.00
875 133 0.04
877 135 0.04
878 3 0.00
879 4 0.00
880 1 0.00
881 3 0.00
882 2 0.00
883 2 0.00
884 147 0.05
885 816 0.26
886 5 0.00
888 1 0.00
889 3 0.00
890 2 0.00
891 4 0.00
892 106 0.03
893 5 0.00
894 91 0.03
895 5 0.00
896 5 0.00
897 106 0.03
898 26 0.01
899 4 0.00
900 61 0.02
901 152 0.05
902 1 0.00
903 221 0.07
904 47 0.02
905 198 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (881 bp):
GGGGGTCGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TCTGCCATAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CTGCCGCCGCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGATTAGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCACATGCTG
GGCTCGATCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
GAACCTGACCGACGACATTGGGGTTCCGACGATCGG
Found at i:12778121 original size:26 final size:26
Alignment explanation
Indices: 12778085--12778135 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12778075 CGACTTAGTT
*
12778085 ATACGAAGTTCATTCTTAGTCTAAGC
1 ATACGAAGTTCATTCCTAGTCTAAGC
*
12778111 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCTAGTCTAAG
12778136 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGAAGTTCATTCCTAGTCTAAGC
Found at i:12779239 original size:26 final size:26
Alignment explanation
Indices: 12779202--12779251 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12779192 TTGGCCCGCA
*
12779202 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGATCATTCCCAGTCTAAGCG
*
12779228 TACGGAGATCATTCTCAGTCTAAG
1 TACGGAGATCATTCCCAGTCTAAG
12779252 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGATCATTCCCAGTCTAAGCG
Found at i:12780122 original size:26 final size:26
Alignment explanation
Indices: 12780092--12780170 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
12780082 GTTAACTTAG
12780092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12780118 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12780144 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12780170 G
1 G
12780171 ATTGGACCGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12781024 original size:242 final size:243
Alignment explanation
Indices: 12780592--12781049 Score: 704
Period size: 242 Copynumber: 1.9 Consensus size: 243
12780582 AACTCCTGCC
*
12780592 AAAAAAGTTTTAAAAAATCGCGAACCGCAAAAAGTTTAAAAAATCACGAAAAATAGAAAACGAGT
1 AAAAAAGTTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCACGAAAAATAGAAAACGAGT
* *
12780657 CGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATCGTATGAATTTACAAGCCATAAAA
66 CGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAA
** * * *
12780722 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
131 ATGGCATTGGCACACAAAAATAAGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
*
12780787 CTTGTGCATCCCGTCTCTCTGTTCGGCGTATTGCCCGTCCTTCTTCCG
196 CTTGCGCATCCCGTCTCTCTGTTCGGCGTATTGCCCGTCCTTCTTCCG
* * **
12780835 AAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAATAA-AGAAAACGAG
1 AAAAAAGTTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCACGAAA-AATAGAAAACGAG
* * * *
12780898 TTGTCTTGCCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAA
65 TCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAA
* **
12780963 AATGGCATTGGCACATAAAAATAAGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
130 AATGGCATTGGCACACAAAAATAAGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
*
12781028 GCTTGCGCATCCTGTCTCTCTG
195 GCTTGCGCATCCCGTCTCTCTG
12781050 GTAGTGCCCG
Statistics
Matches: 193, Mismatches: 21, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
242 185 0.96
243 8 0.04
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.24
Consensus pattern (243 bp):
AAAAAAGTTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCACGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACACAAAAATAAGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
CTTGCGCATCCCGTCTCTCTGTTCGGCGTATTGCCCGTCCTTCTTCCG
Found at i:12781293 original size:26 final size:26
Alignment explanation
Indices: 12781256--12781306 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12781246 GGTTGACTTC
12781256 AGCATACAGAGTTCATTCCCAGTCTT
1 AGCATACAGAGTTCATTCCCAGTCTT
*
12781282 AGCATACGGAGTTCATTCCCAGTCT
1 AGCATACAGAGTTCATTCCCAGTCT
12781307 AAGATCGGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTT
Found at i:12782403 original size:26 final size:26
Alignment explanation
Indices: 12782374--12782426 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12782364 GTTGACTTAG
12782374 GCATACAGAGTTCATTCCCAA-TCTAA
1 GCATACAGAGTTCATT-CCAAGTCTAA
**
12782400 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
12782426 G
1 G
12782427 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:12782536 original size:11 final size:11
Alignment explanation
Indices: 12782507--12782539 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
12782497 ATCGGGGCAC
*
12782507 CATCGCCAGAG
1 CATCGCCGGAG
12782518 CATCGCCGGAG
1 CATCGCCGGAG
12782529 CATCGCCGGAG
1 CATCGCCGGAG
12782540 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.36, G:0.33, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:12782631 original size:12 final size:12
Alignment explanation
Indices: 12782614--12782647 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
12782604 ATGCTGGCAC
*
12782614 TTGGCCCTTATA
1 TTGGCCCCTATA
12782626 TTGGCCCCTATA
1 TTGGCCCCTATA
12782638 TTGGCCCCTA
1 TTGGCCCCTA
12782648 ATCACTCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.32, G:0.18, T:0.35
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:12783321 original size:26 final size:26
Alignment explanation
Indices: 12783292--12783344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12783282 GTTGACTTAG
*
12783292 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12783318 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12783344 G
1 G
12783345 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12784224 original size:26 final size:26
Alignment explanation
Indices: 12784188--12784240 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12784178 GTCGACTTAG
*
12784188 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12784214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12784240 G
1 G
12784241 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12784679 original size:902 final size:897
Alignment explanation
Indices: 12782183--12784954 Score: 3476
Period size: 896 Copynumber: 3.1 Consensus size: 897
12782173 CGATGGGTGC
* * *
12782183 TGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTAGCTTAGGCTTACGGAGTTCATTCCCAG
1 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * *
12782248 TCTAAGATCAAACCAGACTGAGGGTT-GC----GATAGC-AC-CC-AAAGGGGGACCCAACCGGT
66 TCTAAGATCAGACCAGACTGAGGGTTCGCAAAGGATAGCAACACCTAAAAGGGGACCCGATCGAT
* * * * ** * *
12782305 CCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCTCGTACACTCGTTTCGTCGGTTGAC
131 CCCCGGCTTGCGCATCCCG-ACCTCTGGCCGGCTGAGCGCCCACACACTCGTTCCGTGGGTTGAC
* * *
12782370 TTAGGCATACAGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCAAGTCTAAGATCGGACC
195 TTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACT
* * * * * *
12782435 GGACCGAGGGTTGCAGCAGCACATGCTGGGATCGAGCATGTGCTGGTGCCACATTTTTCTTCATC
260 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATCTGCTGGTGCCGCATTTTTCTTCACC
* * * * *
12782500 GGGGCACCATCGCCAGAGCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTT
325 AGGGCACCAT---C---G--T---CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTA
* * * * *
12782565 CGGCG--AT--CGG--GGGGGGTGTGCGCACATGATGGGCGATGGATGCTGGCACTTGGCCCTTA
379 CGGCGATATGGGGGTCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
* *
12782624 TATTGGCCCCTATATTGGCCCCTAATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
444 TATTGG---C--------CCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
**
12782689 CATTTGAGATTTTTTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
497 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
12782754 CAAATGGTCAAAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGGA-GACCAACAA
562 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAA
* *
12782818 AAATACAAGGACCACGTCTACCAAGC-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
626 AAATACAAGGATCACGTCTACCAA-CTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* ** *
12782882 CTCGAACCGTAAAAAGTTTTGAAAATTGTGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
690 CCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * ** **
12782947 CACGTGAAGGCTTAAGAGACCATTGTATGAATTTACGAGTGATAAAAATGGCATTGGCACATAGA
755 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
**
12783012 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCAC-ATCTTGCGCATCCCGTCTC
820 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGTCTC
*
12783076 TCTGGCCGACGTAG
884 TCTGGCCGGCGTAG
* * * * *
12783090 TGCCCGACCGTCCGCCCGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
1 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * *
12783155 TCGAAGATC-GAACCGGA-TCGAGGGTTGCGAAAGCAGGATCGGTAGCA--TGCAGAGGAGGACC
66 TCTAAGATCAG-ACCAGACT-GAGGGTT-CGCAA--AGGAT-AGCAACACCT-AAAAGG-GGACC
* * * *
12783216 CGATTGATCCCCGGCTTACGCATCCCGACCTCTGGCTGGCTGAGCGCCCTCACACTCGTTCCGTG
123 CGATCGATCCCCGGCTTGCGCATCCCGACCTCTGGCCGGCTGAGCGCCCACACACTCGTTCCGTG
* *
12783281 GGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGA
188 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCAAGTCTAAGA
* * * * *
12783346 TCGGA-TCAGACCGAGAGTTGCGGCAGCACATGCTGGGCTTGAGGATCTGTTGGTGCCGTATTTT
253 TCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATCTGCTGGTGCCGCATTTT
* * *
12783410 TCTTCACCAGGGCACCA---TC---G---C-T-GGAGAACCTGACCGACGGCATTTGGGTTATGA
317 TCTTCACCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTACGG
* * *
12783464 CGAT-CGGGAGGCTCGGGCTGGGGGGTGTGCGCGCATGATGTGCAATGGGTGCTGGTACATGGCC
382 CGATATGGG-GG-T----C-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
** *
12783528 CTTATATTGGAACCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAG
440 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
12783593 ATTTTACAGGCTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
505 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * *
12783658 CACGAAATCTTATACACTTCAAGTTTTTAGCGGAATTTTTTTGTCCATGCCAACAAAAATACAAG
570 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
12783723 GATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCAT
635 GATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGT
** * *
12783788 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCGATGAAACTTCACGTGCAGG
700 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
12783853 CTTAAGGGACTATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
765 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
** * *
12783918 TGTGCCTAAACCCATGTACCACACTATCGATCCACGACTTGCGTAT-CCGTCTCTCTGGCCGGCG
830 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCG
12783982 TAG
895 TAG
* * * * * *
12783985 TTCCCGCCCGCCCGCCCGCCCGTTTGTTTCGTCAGTTGGCTTAGGCATAGGGAGTTTATTCCCAG
1 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* *
12784050 TCTAAGATCAGACCAGACTGAGGCTTACGGCAATAGGATTGACAACACCTAAAAGGGGACCCGAT
66 TCTAAGATCAGACCAGACTGAGGGTT-C-GCAA-AGGATAG-CAACACCTAAAAGGGGACCCGAT
** * * * *
12784115 CGATCGTCGGCTTGCACATCCTGACCATCTGGCCGGCTGAGCGCCCACACACTCATTCCATGGGT
127 CGATCCCCGGCTTGCGCATCCCGACC-TCTGGCCGGCTGAGCGCCCACACACTCGTTCCGTGGGT
* * * *
12784180 CGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
191 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCG
** *
12784245 GACTGGACCGAGGGTTGCGGCCA-CACATGCTACGCTTGAGCATCTGCTGGTGTCGCATTTTTCT
256 GACTGGACCGAGGGTTGCGG-CAGCACATGCTGGGCTTGAGCATCTGCTGGTGCCGCATTTTTCT
* * *
12784309 TCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGGCGA
320 TCACCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTACGGCGA
12784374 TATGGGGGTCGGGAGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
385 TATGGGGGTCGGG-GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
*
12784439 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAG
449 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
12784504 GTTTGCTGCCAGTAGCCATTAAATTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAAAATC
514 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
12784569 TTGTACACTTCGAGTTTTTAGCTG-ATTTCTTTTGTGCATGCCAACAAAAATACAAGGATCACAT
579 TTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
12784633 CTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAAACGTAAAAAGTT
643 CTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
12784698 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
708 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
12784763 ACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
773 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * *
12784828 AACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTTTCTGGCCGGTGTAG
838 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
12784888 TGCCCGCCCGCCCACCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
1 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
12784953 TC
66 TC
12784955 ACAACATATG
Statistics
Matches: 1599, Mismatches: 209, Indels: 118
0.83 0.11 0.06
Matches are distributed among these distances:
894 1 0.00
895 131 0.08
896 567 0.35
897 10 0.01
898 1 0.00
899 2 0.00
900 2 0.00
901 8 0.01
902 439 0.27
903 77 0.05
904 1 0.00
905 1 0.00
906 3 0.00
907 111 0.07
908 52 0.03
909 1 0.00
915 3 0.00
916 1 0.00
917 1 0.00
918 161 0.10
919 26 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (897 bp):
TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACTGAGGGTTCGCAAAGGATAGCAACACCTAAAAGGGGACCCGATCGAT
CCCCGGCTTGCGCATCCCGACCTCTGGCCGGCTGAGCGCCCACACACTCGTTCCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACTG
GACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATCTGCTGGTGCCGCATTTTTCTTCACCA
GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTACGGCGATATGGG
GGTCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAC
TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
Found at i:12785667 original size:742 final size:744
Alignment explanation
Indices: 12784181--12785700 Score: 2358
Period size: 742 Copynumber: 2.0 Consensus size: 744
12784171 TCCATGGGTC
* *
12784181 GACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAG
** *
12784246 ACTGGACCGAGGGTTGCGGCCACACATGCTACGCTTGAGCATCTGCTGGTGTCGCATTTTTCTTC
66 ACTGGACCGAGGGTTGCGAACACACATGCTACGCTCGAGCATCTGCTGGTGTCGCATTTTTCTTC
* *
12784311 GCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATA
131 GCCAGGGCACCATCGCCGGAGCATCGTCAGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATA
* *
12784376 TGGGGGTCGGGAGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
196 GGGGGGGCGGGAGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
12784441 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGT
261 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
12784506 TTGCTGCCAGTAGCCATTAAATTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTT
326 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTT
* * *
12784571 GTACACTTCGAGTTTTTAGCTGATTTCTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA
391 GTACACTTCGAGTTTTTAGCTAATGTCTTTTGTCCATGCCAACAAAAATACAAGGATCACATCTA
12784636 CCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAAACGTAAAAAGTTTTG
456 CCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAAACGTAAAAAGTTTTG
*
12784701 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
521 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACC
*
12784766 ATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
586 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
*
12784831 CCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTTTCTGGCCGGTGTAGTGCCCGCC
651 CCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCC
*
12784896 CGCCCACCTGCCTGCTCGTTTCGTCGGTT
716 CGCCCACCCGCCTGCTCGTTTCGTCGGTT
* * *
12784925 GGCTTAGGCATACGGAGTTCATTCCCAGTC-ACAACATATGGAGTTCATTCCCAGTCTAAGATCG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTA-AACATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * *
12784989 GA-TCGGATCGAGGGTTGC-AACAGCACATGTTGGGCTCGGGCATGTGCTGGTG-CTGCATTTTT
65 GACT-GGACCGAGGGTTGCGAACA-CACATGCTACGCTCGAGCATCTGCTGGTGTC-GCATTTTT
* * * * * *
12785051 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACTGGCGGCATTGGGGTTTCGGC
127 CTTCGCCAGGGCACCATCGCCGGAGCATCGTCAGAGAACCTAACCGACGGCATTGGGGTTCCGGC
* * * * *
12785116 GATCGGGGGGGCGGG-GGGTGTGCGCACGTGATGTGCGGA-GGGTGCTGGTACTTGTCCCTTGTA
192 GATAGGGGGGGCGGGAGGGTGTGCGCACATGATGTGC-AATGGGTGCTGGTACTTGGCCCTTATA
*
12785179 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTTA
256 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
12785244 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAA
321 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAAA
12785309 ATCTTGTACACTTCGAGTTTTTAGCTAAATGT-TTTTGTCCATGCCAA-AAAAAGTACAAGGATC
386 ATCTTGTACACTTCGAGTTTTTAGCT-AATGTCTTTTGTCCATGCCAACAAAAA-TACAAGGATC
* * * * *
12785372 ACATCTACCAAGTTTGGGGCCACAACTCCTTCC-GAAAAATTTTAAAAAATCCCGAACCGTAAAA
449 ACATCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAAACGTAAAA
* *
12785436 AGTTTTGAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTA
514 AGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTA
*
12785501 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
579 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* *
12785566 CCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT
644 CCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTCTCTGGCCGGTGTAGT
* * * *
12785631 GCCCGCCCGCCCGCCCG-TTCGTTCGTTTCTTCGGTT
709 GCCCGCCCGCCCACCCGCCT-GCTCGTTTCGTCGGTT
* * *
12785667 GACGTAGGCATACGGGGTTCATTCCCAATCTAAA
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
12785701 ATCAGACCAG
Statistics
Matches: 706, Mismatches: 61, Indels: 20
0.90 0.08 0.03
Matches are distributed among these distances:
741 1 0.00
742 277 0.39
743 252 0.36
744 176 0.25
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (744 bp):
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAG
ACTGGACCGAGGGTTGCGAACACACATGCTACGCTCGAGCATCTGCTGGTGTCGCATTTTTCTTC
GCCAGGGCACCATCGCCGGAGCATCGTCAGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATA
GGGGGGGCGGGAGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTAATGTCTTTTGTCCATGCCAACAAAAATACAAGGATCACATCTA
CCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAAACGTAAAAAGTTTTG
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCC
CGCCCACCCGCCTGCTCGTTTCGTCGGTT
Found at i:12785870 original size:26 final size:26
Alignment explanation
Indices: 12785834--12785883 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12785824 TTGACTTAGT
*
12785834 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12785860 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
12785884 TGATCAAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:12787649 original size:26 final size:26
Alignment explanation
Indices: 12787619--12787697 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12787609 GTTGACTTAG
* *
12787619 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12787645 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12787671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12787697 G
1 G
12787698 ATCGGACTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12788098 original size:921 final size:918
Alignment explanation
Indices: 12786733--12790341 Score: 4351
Period size: 904 Copynumber: 4.0 Consensus size: 918
12786723 TAGGCATACA
* * * * **
12786733 GAGTTCATTCCCAGTCTCAGCATATGGAGTTCATTCCCAGTTTAAGATCGAACCCGATCGAGGGT
1 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGGATCGAGGGT
* * *
12786798 TGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTCTCTTTC-CCGGGGCACCAT
65 TGCAGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCACCAT
* * * * * * *
12786862 TGCCGGAGCATCATCGGAGAACTTCACTGACGGCATTAGGGTTCCGACGATCGGGGGGGTC-GGG
129 CGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCAGGGGGG-CAGGG
*
12786926 GGGG-ATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
193 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
12786990 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAT
258 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
12787055 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
323 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
12787120 TTTTTTAGCTGAA-TATTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
388 TTTTTTAGCTGAACT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
12787184 GGCCAAAACTCCCTCTGAAAAAATTTTAAAAAATCCCAAACCGGAAAAAGTTTTAAAAATCATGA
452 GGCCAAAACACCCTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
* * * *
12787249 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGATTAAAGGACCATTGTACGAA
517 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
**
12787314 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
582 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
12787379 CCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCTGGCGCAGTGCCCG-CCACCCGCTCG
647 CCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGCAGTGCCCGCCCACCCGCTCG
* *
12787443 TTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
712 TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * *
12787508 ATGGCAGCAGGATCGCTAGCACGCAGAGGGGGACTCGGTCAATCCCCAACTTGCAT-ATCCCGCC
777 ATGGCAGCAGGATCGCTAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGC-TCAT-CCGCC
* * *
12787572 CCATGGCCGGCTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGACTTCATTCC
840 CC-TGGCCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
12787637 CAGTCTAAGCATATG
904 CAGTCTAAGCATATG
12787652 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGG
1 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGGATC-GAGGG
* * ** *
12787716 TTGC-GACAGCACATGCTAGGC-CGGAGCATGTTCTGGTGTTGCATTTTTCTTCGTCGGGGCACC
64 TTGCAG-CAGCACATGCTAGGCTTGG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * *
12787779 ATCGTCGGAGCATCACCGGAGAACCTAACTGATGGCATTAGGGTTCC-AGCGATC-GGGGGGTCG
127 ATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGA-CGATCAGGGGGG-C-
*
12787842 AGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
189 AGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * * *
12787907 CCCTCATCAAACTTTGAGAACTCACACCCCCTCAAAGAGAATTTGAGATTTTACAGGCTTGCTGC
254 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
12787972 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACT
319 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* **
12788037 TCGAGTTTTTT-GCTGAACTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAACTACCAAGT
384 TCGA-TTTTTTAGCTGAACTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * * * * **
12788101 TCAGGGCCAAAACACCTTCCGAAAAAATTTTGAAAAATCTCAAACCGTAAAAAGTTTTGAAAATC
448 TTGGGGCCAAAACACCCTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
* * *
12788166 GTGTAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
513 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
12788231 TGAATTTACAAGCCATAAAAATGGCAATGGCACATAGAAATATGAAGATGTGCCTAAAACCACCT
578 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* ** *
12788296 ACCACCCTATCGATCCACGGCTTGCGCATCCCATTTCTCTGGCCGACGTAGTGCCCACCCGTCCG
643 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGCAGTG----CCCG-CC-
* * *
12788361 CCCGCTCGCTCGTTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
702 CAC-C-CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* ** * * * *
12788426 GGATCGAGGGTTACAGCAGCAGGATCGGTAGCACACATAGGGGGACCCGGCCGATCCCCGACTTG
765 GGACCGAGGGTTATGGCAGCAGGATCGCTAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTG
* * * * *
12788491 TTCATCCTGCCCCTCTAGCTGGCTGAGCGCCTACACGCTCGTTTCGTGGGTTGACTTAGGCATAC
830 CTCATCC-G-CCC-CTGGCCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAC
12788556 ---G----------G----AG----T-
892 GGAGTTCATTCCCAGTCTAAGCATATG
*
12788561 ---TT-ATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATAGGATCGAGGGT
1 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-GGATCGAGGGT
* *
12788622 TGCAGCAGCACATGCTAGGCTTGGGCATCTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATC
65 TGCAGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * ** * * *
12788687 GTCAGAGCATCGCCGGACTACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGCGGG
130 GTCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCAGGGGGGCAGGGGG
12788752 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
195 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
12788817 TGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * * *
12788882 CTATTAAAGTGTTTGAAATTGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGATT
325 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATT
* * *
12788947 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGTGGC
390 TTTTAGCTGAACTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
12789012 CAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT-AACA
455 CAAAACACCCTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAA-A
* *
12789076 TATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATT
519 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
12789141 TACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGAGCCTAAACCCAACTACCACC
584 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* ** * *
12789206 CTATCGATCCACGGCTTGCGCATCCC-ACCTCTCTGATCGATGTAGTCCCCGCCAGCCCGCCCAC
649 CTATCGATCCACGGCTTGCGCATCCCGTCC-CTCTGGCCGACGCAGT--------GCCCGCCCAC
* * ** * *
12789270 CCACTCATTTTGTCGGTTGGCTTAGGCATACCTAGTTCATTCCCAGTCTAAGATCAGACTGAACC
705 CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * *
12789335 GAGAGTTGTGGCAGAAGGATCGAC-AACACGCAGAGGCGGA-CC--T-G------G-C-TG---A
770 GAGGGTTATGGCAGCAGGATCG-CTAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCTCA
* * * * *
12789384 T----CTCTGGCTGGCTGAGCGCCCGCACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTC
834 TCCGCCCCTGGCCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
*
12789445 ATTCCCAGTCTAAGCATACG
899 ATTCCCAGTCTAAGCATATG
*
12789465 GAGTTCATTCCTA--CT---C-TA---AG---A-T--C-G-----GATC--A--GATCGAGGGTT
1 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGGATCGAGGGTT
* * * *
12789505 GCAGCAGCACATGCTTGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGG---CA---
66 GCAGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
* * * * *
12789564 -C----CATCACCGGAGAACCTGACCGACAGTATTAGGGTTCTGGCGATC-GGGGGGCCA-GGAG
131 TCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCAGGGGGG-CAGGGGG
* *
12789622 CGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
195 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
12789687 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
12789752 CAATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
325 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATT
* * * **
12789816 TTTTAGCTGAACTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGATGC
390 TTTTAGCTGAACTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
12789881 CAAAACTCCCTCCGAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAA
455 CAAAACACCCTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
*
12789946 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
520 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
12790011 ACAAACCATAAAAATGGCATTAGCACACAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCC
585 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
12790076 TATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGACAG-AGTGCCCGCCCGCCCGCTCGTT
650 TATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGAC-GCAGTGCCCGCCCACCCGCTCGTT
** * * * * * *
12790140 TCATCGGTTGGGTTAGGCATATGGAGTTCATTCCTAGTCTAAGATC-GAACCAGACTGAGGGTTG
714 TTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTA
* * * * * * ** * *
12790204 TGACAGCAGGATCGGTAGCACGCAGAAGGGAACCCGATCGATCTCCGGTTTACGCATCCGACCCT
778 TGGCAGCAGGATCGCTAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCTCATCCG-CCC-
* * *
12790269 TCTGGCCGGCTGAGTGCCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
841 -CTGGCCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
12790334 AGTCTAAG
905 AGTCTAAG
12790342 ATCGAACCAG
Statistics
Matches: 2328, Mismatches: 267, Indels: 226
0.83 0.09 0.08
Matches are distributed among these distances:
860 1 0.00
861 90 0.04
862 2 0.00
864 1 0.00
865 1 0.00
869 304 0.13
870 160 0.07
871 38 0.02
873 1 0.00
875 1 0.00
876 2 0.00
879 2 0.00
881 1 0.00
882 107 0.05
883 67 0.03
885 2 0.00
887 4 0.00
889 2 0.00
892 3 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 1 0.00
899 4 0.00
900 1 0.00
902 2 0.00
903 10 0.00
904 532 0.23
905 150 0.06
906 17 0.01
907 4 0.00
908 10 0.00
910 1 0.00
912 1 0.00
914 2 0.00
918 17 0.01
919 148 0.06
920 7 0.00
921 448 0.19
922 7 0.00
925 4 0.00
927 1 0.00
928 2 0.00
929 4 0.00
930 113 0.05
931 48 0.02
932 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (918 bp):
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGGATCGAGGGTT
GCAGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
TCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCAGGGGGGCAGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTT
TTTAGCTGAACTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACACCCTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGCAGTGCCCGCCCACCCGCTCGTTTT
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGG
CAGCAGGATCGCTAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCTCATCCGCCCCTGGC
CGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATATG
Found at i:12788579 original size:26 final size:26
Alignment explanation
Indices: 12788550--12788602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12788540 GTTGACTTAG
*
12788550 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12788576 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12788602 G
1 G
12788603 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12789015 original size:904 final size:900
Alignment explanation
Indices: 12784909--12791983 Score: 8608
Period size: 901 Copynumber: 7.9 Consensus size: 900
12784899 CCACCTGCCT
* * * *
12784909 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-ACAACATATGGAGTTCAT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA-AGCATACGGAGTTCAT
* * * *
12784973 TCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCAACAGCACATGTTGGGCTCGGGCATGTGCTG
65 TCCCAGTCTAAGATCGGATAGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTG
* * * * * *
12785038 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACTGGCGGCA
130 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCA
* * * *
12785103 TTGGGGTTTCGGCGATCGGGGGGGCGGGGGGTGTGCGCACGTGATGTGCGGA-GGGTGCTGGTAC
195 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC-GATGGGTGCTGGTAC
* * *
12785167 TTGTCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
12785232 TTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
12785297 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTCCATGCCAA-AAAAA
389 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
12785361 GTACAAGGATCACATCTACCAAGTTTGGGGCCACAACTCCTTCCG-AAAAATTTTAAAAAATCCC
454 -TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
12785425 GAACCGTAAAAAGTTTTGAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
518 GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
12785490 GTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
583 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
12785555 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTG
648 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
** ** * * * * *
12785620 GCCGGTGTAGTGCCCGCCCGCCCGCCCGTTCGTTCGTTTCTTCGGTTGACGTAGGCATACGGGGT
713 GCCGACGTAGTGCCC-CCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * *
12785685 TCATTCCCAATCTAAAATCAGACCAGATCGAGGGCTGCGGTAGCAAGATCGATAGCACATC-GAG
776 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACA-CAGAG
* * * *
12785749 GGGGACCCGGTCAATCCCC-AGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCAC
840 GGGGACCCGGTCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAC
** * * *
12785810 GCTAATTTCGTCGGTTGACTTAGTCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* ** * * * *
12785875 CCCAGTCTATGATCAAATCGGA-CTGAGGGTTAC-GACAGCACATGCTAGGCTCGGGCATGTGCT
66 CCCAGTCTAAGATCGGATAGGATC-GAGGGTTGCAG-CAGCACATGCTGGGCTTGGGCATGTGCT
* *
12785938 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGC
129 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGC
* ** *
12786003 ATTGAGGTTCCGGTGATCGAGGGGCCGGGGGGTGTGCGCACAT-AGTGTGCGATGGGTGCTGGTA
194 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA-TGTGCGATGGGTGCTGGTA
12786067 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
258 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
12786132 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
12786197 AAATGGTCACATAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
388 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
12786262 ATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTC
453 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
*
12786327 GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
518 GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
12786392 GTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
583 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
12786457 ATGAA-ATTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCT
648 ATGAAGA-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* ** * * *
12786521 AGCCGGTGTAGTG--CCCC-CCG--C-CCC-CTAGTTTCGTCGATTGGCTTAGGCATAGGGAGTT
712 GGCCGACGTAGTGCCCCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * ** * *
12786579 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATAGAAAGCGCATAGAGGG
777 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGG
* * * *
12786644 GGACCCGGTTGATCCCC-AGCTTGCGCATCCCACCCCTCTGGCCAGCTAAGCGCCCGA-AC
842 GGACCCGGTCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC-ACAC
* * * *
12786703 GCTCGTTTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTCAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ***
12786768 CCCAGTTTAAGATCGAACCCGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGG
66 CCCAGTCTAAGATCGGATAGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGG
* * * * * ** * * *
12786833 TGCCGTATTTCTCTTTC-CCGGGGCACCATTGCCGGAGCATCATCGGAGAACTTCACTGACGGCA
131 TGCCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCA
* *
12786897 TTAGGGTTCCGACGATCGGGGGGGTCGGGGGG-GATGCGCACATGATGTGCGATGGGTGCTGGTA
195 TTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTA
12786961 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
258 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
12787026 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
12787091 AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATATTTTTGTGCATACCAAAAAAA
388 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
12787156 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCTGAAAAAATTTTAAAAAATCCC
453 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
12787221 AAACCGGAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
518 GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * *
12787286 CTGAAGGATTAAAGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
583 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
12787351 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTG
648 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
12787416 GCTGGCGCAGTG-----C-CCG-CCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTC
713 GCCGACGTAGTGCCCCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * *
12787474 ATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGCAGGATCGCTAGCACGCAGAGGGG
778 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGG
* * * ** * *
12787539 GACTCGGTCAATCCCCAACTTGCATATCCCGCCCC-ATGGCCGGCTGAGTGCCCACAC
843 GACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAC
* * * *
12787596 GCTCGTTTCATGGGTTGACTTAGGCATACAGACTTCATTCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
12787661 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGC-GACAG
66 CCCAGTCTAAG-AT-C-G-G---------A---T---A--GGA-T---C-GAGGGTTGCAG-CAG
* * * **
12787725 CACATGCTAGGC-CGGAGCATGTTCTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
104 CACATGCTGGGCTTGG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * *
12787789 CATCACCGGAGAACCTAACTGATGGCATTAGGGTTCC-AGCGATCGGGGGGTCGAGGGGGGGTGT
168 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGG-C--CGGGGGGTGT
*
12787853 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
229 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * *
12787918 CTTTGAGAACTCACACCCCCTCAAAGAGAATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATT
294 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
12787983 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTT
359 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* ** **
12788048 GCTGAACTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAACTACCAAGTTCAGGGCCAAAA
424 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * *
12788113 CACCTTCCGAAAAAATTTTGAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGTAAAATAGA
489 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGA
*
12788178 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
554 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* ** *
12788243 CCATAAAAATGGCAATGGCACATAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCG
619 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
12788308 ATCCACGGCTTGCGCATCCCATTTCTCTGGCCGACGTAGTGCCCACCCGTCCGCCCGCTCGCTCG
684 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCG-CCGCCCGCCCGCTCG
* *
12788373 TTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
747 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * ** *
12788438 ACAGCAGCAGGATCGGTAGCACACATAGGGGGACCCGGCCGATCCCCGACTTGTTCATCCTGCCC
812 GCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCC
* * *
12788503 CTCTAGCTGGCTGAGCGCCTACAC
877 CTCTGGCCGGCTGAGCGCCCACAC
*
12788527 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
12788592 CCTAGTCTAAGATCGGATAGGATCGAGGGTTGCAGCAGCACATGCTAGGCTTGGGCATCTGCTGG
66 CCCAGTCTAAGATCGGATAGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGG
* * * **
12788657 TGCCGCATTTTTCTTCGCCAGGGCACCATCGTCAGAGCATCGCCGGACTACCTGACCGACGGCAT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
12788722 TGGGGTTCCGACGATCAGGGGGGCCGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
196 TGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
12788787 TTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * * *
12788852 TTTGAGAGTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATTGGGACACCTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
12788917 AATGGTCACAAAATCTTGTACAGTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
389 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
12788982 TACAAGGATCATGTCTACCAAGTTTGTGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCG
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * *
12789047 AACCGCAAAAAGTTTCAAAAATCAT-AACATATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
519 AACCGTAAAAAGTTTTAAAAATCGTGAA-AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
12789111 GTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAAAAAT
583 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * **
12789176 ATGAAGATGAGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTG
648 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
** * * * * * **
12789241 ATCGATGTAGT-CCCCGCCAGCCCGCCCACCCACTCATTTTGTCGGTTGGCTTAGGCATACCTAG
713 GCCGACGTAGTGCCCC-CC-G-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * ** * *
12789305 TTCATTCCCAGTCTAAGATCAGACTGAACCGAGAGTTGTGGCAGAAGGATCGACAACACGCAGAG
775 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAG
* * *
12789370 GCGGA-CC--T-G------G-C-T--G-AT-------CTCTGGCTGGCTGAGCGCCCGCAC
840 GGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAC
* * *
12789409 GATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
12789474 CCTACTCTAAGATCGGATCA-GATCGAGGGTTGCAGCAGCACATGCTTGGCTTGGGCATGTGCTG
66 CCCAGTCTAAGATCGGAT-AGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTG
* * * *
12789538 GTGCCGTATTTTTCTTTGTCGGGGCACCA---T-----CA---CCGGAGAACCTGACCGACAGTA
130 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCA
* * * * * *
12789592 TTAGGGTTCTGGCGATCGGGGGGCCAGGAGCGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
195 TTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
12789657 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
12789722 TTTGAGATTTTACAGGTTTGCTGCGAGTAGCAATTAAAGTGTCTGAAATGGGGACAC-TTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
12789786 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAACTTTTTTGTGCACGCCAACAAAAA
389 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* ** * *
12789851 TACAAGGATCACGTCTACTAAGTTTGATGCCAAAACTCCCTCCGAAAAAATTTTAAAAAATCTCG
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * * *
12789916 AACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
519 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
12789981 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTAGCACACAGAAATA
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * *
12790046 TGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
12790111 CCGACAG-AGTG-----C-CCGCCCGCCCGCTCGTTTCATCGGTTGGGTTAGGCATATGGAGTTC
714 CCGAC-GTAGTGCCCCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
12790169 ATTCCTAGTCTAAGATC-GAACCAGACTGAGGGTTGTGACAGCAGGATCGGTAGCACGCAGAAGG
778 ATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGG
* * * ** * * *
12790233 GAACCCGATCGATCTCCGGTTTACGCAT-CCGACCCTTCTGGCCGGCTGAGTGCCCACAC
842 GGACCCGGTCGATCCCCGACTTGCGCATCCCG-CCCCTCTGGCCGGCTGAGCGCCCACAC
*
12790292 GTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA----A--
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
12790348 --C---C--AGA-C---------CGAGGGTTGCGGCAGCAAATGCTGGGCTTGGGCATGTGCTGG
66 CCCAGTCTAAGATCGGATAGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGG
* * * * * ** * * *
12790396 TGCCGCATTTTTCTTTGCCGGGGCACCATTGCCGAAGCATTACCAGAGAACCTAACCGGCGGCAT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
* * *
12790461 TGGGGTTTC-AGCGATCGGACGGGCCGAGGGGGTGTGCGCACATGAAGTGCGATGGGTGCTGGTA
196 TGGGGTTCCGA-CGATCGG-GGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
12790525 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACACATACCCCCTTAAAGTGC
258 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
12790590 ATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTG-CTTAAAATGGGGACACTTTTTT
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTT
* * * **
12790654 CAAATGGTGACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATTTATGCCAACAAA
387 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
12790719 AATACAAGGATCAAGTCTACCAAGTTTGGGGCCAGAAGTCCTTCC-AAAAGAATTTTAAAAAATC
452 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATC
*
12790783 CCAAACCGTAAAAAGTTTTAAAAATCGT-AAAAAGTAGAAAACGAGTCGTCTTGCCATGAAACTT
516 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
12790847 CACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGA
580 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
12790912 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCT
645 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** **
12790977 CTGGCCGGTGTAGTGCCTGCCCGCCCGTCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTTTC
710 CTGGCCGACGTA--G--TG--C-CCC--CCG-----CCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** *
12791042 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTT----------G--C
761 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * ** * * * * *
12791095 GGTAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTTGCGCATCGCACCCCTCTGGCCGACTGA
826 GGTAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
12791160 GTGCCCGCAC
891 GCGCCCACAC
* *
12791170 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * *
12791235 CTCAGTCTAAGATTGGACCA-GACCGAGGGTTGCCA-CAGTACATGCTGGGC-TGAAGCATGTGC
66 CCCAGTCTAAGATCGGA-TAGGATCGAGGGTTG-CAGCAGCACATGCTGGGCTTG-GGCATGTGC
* * * *
12791297 TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGCCGGAGAACCTGACAGGCGG
128 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGG
* * *
12791362 TATAGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG-GATGGGTGCTGGT
193 CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* ** * *
12791426 ACTTGTCCCTTATATTGGCTGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTATAGAG
257 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
12791491 CATTTGAGATTTTACAGGTTTGCTGCTA--AGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
322 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
12791554 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAA
387 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAA
* * * * * *
12791619 AAATACAAGGATCATGTCTACCAAGTATAGCGCCAAAACCCCTTCCGAAAAAGTTTTAAAAAATC
451 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * * *
12791684 TTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
516 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
12791749 ACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
581 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
12791814 ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGTATCCCGTCTCTC
646 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * * *
12791879 TGGCCAACGTAGTGCCCGCCCGTCCGTCCGCCCGTTCATTTTGTTGGTTGGCTAAGGCATACGAA
711 TGGCCGACGTAGTGCCC-CCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
12791944 GTTCATTCCCAATCTAAGATC-GAACCGGAACGAGTGTTGC
774 GTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGC
12791984 AATAGTAGGA
Statistics
Matches: 5370, Mismatches: 623, Indels: 372
0.84 0.10 0.06
Matches are distributed among these distances:
857 65 0.01
860 1 0.00
861 88 0.02
862 2 0.00
864 2 0.00
865 3 0.00
866 1 0.00
867 3 0.00
868 33 0.01
869 466 0.09
870 455 0.08
871 34 0.01
872 1 0.00
873 1 0.00
874 4 0.00
875 1 0.00
876 3 0.00
878 110 0.02
879 4 0.00
880 4 0.00
881 3 0.00
882 168 0.03
883 68 0.01
884 1 0.00
885 1 0.00
888 1 0.00
889 66 0.01
890 67 0.01
891 5 0.00
892 4 0.00
893 397 0.07
894 600 0.11
895 7 0.00
896 1 0.00
897 5 0.00
899 4 0.00
900 80 0.01
901 690 0.13
902 325 0.06
903 32 0.01
904 648 0.12
905 105 0.02
906 12 0.00
909 1 0.00
910 3 0.00
912 1 0.00
914 2 0.00
915 2 0.00
918 15 0.00
919 97 0.02
921 459 0.09
922 1 0.00
927 2 0.00
928 1 0.00
929 4 0.00
930 124 0.02
931 87 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGATAGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGG
TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GACGTAGTGCCCCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGAC
CCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAC
Found at i:12789462 original size:26 final size:26
Alignment explanation
Indices: 12789432--12789484 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12789422 GTTGACTTAG
*
12789432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
12789458 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
12789484 G
1 G
12789485 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Done.