Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 66 of 131
Found at i:12790498 original size:869 final size:868
Alignment explanation
Indices: 12787671--12791964 Score: 4565
Period size: 904 Copynumber: 4.9 Consensus size: 868
12787661 CCCAGTCTAA
* ** * *
12787671 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGC-GACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAG-CAGCACATGCTGG
* * **
12787735 GC-CGGAGCATGTTCTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
65 GCTTGG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * * * * *
12787799 GAACCTAACTGATGGCATTAGGGTTCCAGCGATCGGGGGGTCGAGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTTCAGCGATCGGGGGG-C--CGGGGGGTGTGCGCACATGAT
* * *
12787864 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
12787929 CACACCCCCTCAAAGAGAATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTAA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
12787994 AATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAACTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * *
12788059 TTGTGCATGCCAACAAAAATACAAGGATCACAACTACCAAG-TTCAGGGCCAAAACACCTTCCGA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGA-GGCCAAAACTCCTTCCGA
* * * * *
12788123 AAAAATTTTGAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGTAAAATAGAAAATGAGTCG
450 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
12788188 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** *
12788253 GGCAATGGCACATAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
12788318 TGCGCATCCCATTTCTCTGGCCGACGTAGTGCCCACCCGTCCGCCCGCTCGCTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG------C--CCGCCCGCCCGCTCGTTTCGTCGGT
* * **
12788383 TGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTT-ACAGCAGC
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGA-CAGC
* * * * * ** *
12788446 AGGATCGGTAGCACACATAGGGGGACCCGGCCGATCCCCGACTTGTTCATCCTG-CCCCTCTAGC
765 AGGATCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCC-GACCCCTCTGGC
* * *
12788510 TGGCTGAGCGCCTACACGCTCGTTTCGTGGGTTGACTTAG
829 CGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAG
*
12788550 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATAGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA----A---C----C--AGA-C---------
* * * *
12788615 CGAGGGTTGCAGCAGCACATGCTAGGCTTGGGCATCTGCTGGTGCCGCATTTTTCTTCGCCAGGG
40 CGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** *
12788680 CACCATCGTCAGAGCATCGCCGGACTACCTGACCGACGGCATTGGGG-TTCCGACGATCAGGGGG
105 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCAG-CGATC-GGGGG
12788744 GCCGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
168 GCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
12788809 ATCCCTCATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
12788874 GCCAGTAGCTATTAAAGTGTTTGAAATTGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
12788939 GTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
12789004 TTTGTGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
427 TTTGAGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT
* * *
12789069 CAT-AACATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTG
492 CGTGAA-AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
12789133 TATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGAGCCTAAACCCAA
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
** ** *
12789198 CTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGATCGATGTAGTCCCCGCCAGCC
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCC
* * * * **
12789263 CGCCCACCCACTCATTTTGTCGGTTGGCTTAGGCATACCTAGTTCATTCCCAGTCTAAGATCAGA
678 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * ** * * * *
12789328 -CTGAACCGAGAGTTGTGGCAGAAGGATCGACAACACGCAG-AGGCGGACCTGG-CTGATCTCTG
743 CCAG-ACTGAGGGTTGTGACAGCAGGATCGGTAGCACGCAGAAGG-GGACCCGGTC-GATCCCCG
* * * ** * * * * * ** * ***
12789390 GCTGGCTG-A-GCGCCCGCACGATCATTTCATGGGTTGACTTAG-GCATACG-GAG-TTCATTCC
805 GCTTGC-GCATCCGACC-C-C--TC-TGGC--CGGCTGA-GT-GCCCACACGCTCGTTTCGTGGG
** * *
12789450 CAGTC-TAA
860 TTGACTTAG
* * * * * *
12789458 GCATACGGAGTTCATTCCTACTCTAAGATCGGATCAGATCGAGGGTTGCAGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
12789523 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGG---CA----C----CATCACCGGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *
12789577 ACCTGACCGACAGTATTAGGG-TTCTGGCGATCGGGGGGCCAGGAGCGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTC-AGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
12789641 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12789706 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCAATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12789771 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAACTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12789835 TGCACGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGATGCCAAAACTCCCTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAA
* * * *
12789900 ATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
12789965 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
12790030 TTAGCACACAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACAGCTTGTG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12790095 CATCCCGTCTCTCTGGCCGACAG-AGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGGTTAGGCA
649 CATCCCGTCTCTCTGGCCGAC-GTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
12790159 TATGGAGTTCATTCCTAGTCTAAGATC-GAACCAGACTGAGGGTTGTGACAGCAGGATCGGTAGC
713 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGACAGCAGGATCGGTAGC
* * * * * *
12790223 ACGCAGAAGGGAACCCGATCGATCTCCGGTTTACGCATCCGACCCTTCTGGCCGGCTGAGTGCCC
777 ACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCGACCCCTCTGGCCGGCTGAGTGCCC
*
12790288 ACACGTTCGTTTCGTGGGTTGACTTAG
842 ACACGCTCGTTTCGTGGGTTGACTTAG
* *
12790315 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * * * *
12790380 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATTGCCGAAGCATTACCAGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
12790445 ACCTAACCGGCGGCATTGGGGTTTCAGCGATCGGACGGGCCGAGGGGGTGTGCGCACATGAAGTG
131 ACCTGACCGACGGCATTGGGGTTTCAGCGATCGG-GGGGCCG-GGGGGTGTGCGCACATGATGTG
* * *
12790510 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACACAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12790575 ACCCCCTTAAAGTGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTG-CTTAAAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAA
* *
12790639 TGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * *
12790704 ATTTATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAGAAGTCCTTCC-AAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAA
* *
12790768 GAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGT-AAAAAGTAGAAAACGAGTCGT
453 -AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAA-TAGAAAACGAGTCGT
*
12790832 CTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
12790897 GCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* **
12790962 ACGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTGCCCGCCCGTCCGCCCTCCCGCCCGCCCGCTC
646 GCGCATCCCGTCTCTCTGGCC---G-A---------CG-TAGT--G----CCCGCCCGCCCGCTC
** *** **
12791027 GTTTCGTCGGTTTTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGG-
691 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
** *
12791091 T-T--------G--CGGTAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTTGCGCAT-CGCAC
756 TGTGACAGCAGGATCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCG-AC
* * * *
12791144 CCCTCTGGCCGACTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAG
820 CCCTCTGGCCGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAG
12791193 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC---GA----ACCAGAC
* * *
12791258 CGAGGGTTGCCA-CAGTACATGCTGGGC-TGAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA
40 CGAGGGTTG-CAGCAGCACATGCTGGGCTTG-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * * * * *
12791321 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACAGGCGGTATAGGGGTTCCAACGATCGGGGG
103 GGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCAGCGATC-GGGG
* **
12791386 GGCCGGGGGGTGTGCGCACATGATGTG-GATGGGTGCTGGTACTTGTCCCTTATATTGGCTGCCT
167 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
12791450 ATCCCTCATCAAACCTCGAGAACTCACACCCCTTTATAGAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12791515 GCTA--AGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
12791578 CTTTGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
362 CTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * *
12791643 GTAT-AGCGCCAAAACCCCTTCCGAAAAAGTTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAA
426 GTTTGAG-GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAA
*
12791707 ATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
490 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
12791772 TTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCA
555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
12791837 CCAACCACCCTATCGATCCACAGCTTGCGTATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGT
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-
* * * * * *
12791902 CCGTCCGCCCGTTCATTTTGTTGGTTGGCTAAGGCATACGAAGTTCATTCCCAATCTAAGATC
684 -C--CCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
12791965 GAACCGGAAC
Statistics
Matches: 2876, Mismatches: 385, Indels: 298
0.81 0.11 0.08
Matches are distributed among these distances:
853 1 0.00
854 6 0.00
855 6 0.00
856 6 0.00
857 98 0.03
858 2 0.00
860 4 0.00
861 102 0.04
862 10 0.00
864 1 0.00
868 36 0.01
869 467 0.16
870 453 0.16
871 36 0.01
872 1 0.00
873 1 0.00
874 1 0.00
875 1 0.00
877 2 0.00
878 105 0.04
879 28 0.01
880 4 0.00
881 9 0.00
882 61 0.02
883 3 0.00
884 4 0.00
885 4 0.00
886 2 0.00
887 5 0.00
888 3 0.00
889 45 0.02
890 66 0.02
891 1 0.00
892 3 0.00
894 1 0.00
895 2 0.00
896 2 0.00
897 3 0.00
900 77 0.03
901 248 0.09
902 104 0.04
903 33 0.01
904 664 0.23
905 104 0.04
906 11 0.00
907 4 0.00
908 28 0.01
909 6 0.00
910 6 0.00
911 4 0.00
912 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (868 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTTCAGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGGTAGCACGC
AGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCGACCCCTCTGGCCGGCTGAGTGCCCACAC
GCTCGTTTCGTGGGTTGACTTAG
Found at i:12791223 original size:26 final size:26
Alignment explanation
Indices: 12791193--12791245 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12791183 GTTGACTTAG
12791193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12791219 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12791245 G
1 G
12791246 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12792783 original size:767 final size:766
Alignment explanation
Indices: 12791274--12792792 Score: 2057
Period size: 767 Copynumber: 2.0 Consensus size: 766
12791264 TTGCCACAGT
* *
12791274 ACATGCTGGGCTGAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCA
1 ACATGCTGGGCTGAAGCATGTACTGGTGCCACATTTTTCTTCGTCGAGGCACCATCATCGGAGCA
* * *
12791339 TCGCCGGAGAACCTGACAGGCGGTATAGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCA
66 TCGCCAGAGAACCTGACAGGCGGTATAGGGGTTCCAACGATCCGGGGGGCCAGGGGGTGTGCGCA
* * * **
12791404 CATGATGTGGATGGGTGCTGGTACTTGTCCCTTATATTGGCTGCCTATCCCTCATCAAACCTCGA
131 CATGATGTCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * * *
12791469 GAACTCACACCCCTTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCTAAGCCATTAAAGTGTT
196 GAACTCACACCCCTGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAAGCCAGTAAAGTGTT
* *
12791534 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
261 TGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATT
* * *
12791599 TTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTATAGCGCCAAAACCCCTTC
326 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTATAGCGCCAAAACACCTTC
* *
12791664 CGAAAAAGTTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
391 CGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
12791729 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAA
456 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAA
* * * *
12791794 AATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACA
521 AATGCCATTAGCACGCAAAAATATGAAGATGTACCTAAACCCACCAACCACCATATCGATCCACA
** * * * * * * *
12791859 GCTTGCGTATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGTCCGTCCGCCCGTTCATTTTGTT
586 GCTTGCACATCCCGTCTCTCTGACCAACGTAGTGCCCACCCGCCCGGCCGCCCGCTCATTTCGTC
* *
12791924 GGTTGGCTAAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGAACGAGTGTTGCAATAG
651 GGTTGGCTAAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGAACGAGGGTTGCAACAG
* * *
12791989 TAGGATCGACAGCACCCAGAAGGGGACCTGGCCGATCGGACCAGTCCAAGC
716 CAGCATCGACAGCACCCAGAAGGGGACCCGGCCGATCGGACCAGTCCAAGC
* * *
12792040 ACATGCTGGGCTCG-GGCATGTACTGGTGCCACATTTTT-TGTCGTCGGGGCACCATC-GCTGGA
1 ACATGCTGGGCT-GAAGCATGTACTGGTGCCACATTTTTCT-TCGTCGAGGCACCATCATC-GGA
* * * * *** ** *
12792102 GCATCGTCAGAGAACCTGACCGGCGGTATTGGGGTTTCGGTGATCCTTGGGGTCAGGGGGTGTGC
63 GCATCGCCAGAGAACCTGACAGGCGGTATAGGGGTTCCAACGATCCGGGGGGCCAGGGGGTGTGC
*
12792167 GTACATGATGTACGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
128 GCACATGATGT-CGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
12792232 TTGAGAACTCACATCCCC-GTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCAGTA
192 TCGAGAACTCACA-CCCCTGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCA--AGCCAGTA
*
12792296 AAGTGTTTGAAATGGGGACATTTTTTTCAAAAGGTCACAAAATCTTGTACACTTAGAGTTTTTAG
254 AAGTGTTTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTAGAGTTTTTAG
* * * * * * * *
12792361 CTGAA-TTTTTTTGTGCATGCCAATAAAAATACAAGGATGACGTCTACGAAGTTTGGGGTCGAAA
319 CTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTATAGCGCCAAAA
12792425 CACCTTCCGAAAAAATTTTAAAAAATCTCGAA-TCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
384 CACCTTCCGAAAAAATTTTAAAAAATCTCGAACT-GTAAAAAGTTTCAAAAATCGTGAAAAATAG
* * *
12792489 AAAACGAGTCATCTTGCCATGAAATTTCACGTGAATGCTTAAGGGACCATTGTAAGAA-TTATAA
448 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAA
* *
12792553 GCCATAAAAATGCCATTAGCATG-AAGAAATATGAAGATGTACCTAAACCCACCTACCACCATAT
513 GCCATAAAAATGCCATTAGCACGCAA-AAATATGAAGATGTACCTAAACCCACCAACCACCATAT
** * ** * * *
12792617 CGATCCATGGCTTGCACATCTCGTCTCTCTGACTGACGTAGTTCCTACCCGCCCGGCTGCCCGCT
577 CGATCCACAGCTTGCACATCCCGTCTCTCTGACCAACGTAGTGCCCACCCGCCCGGCCGCCCGCT
* * * * * *
12792682 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGG-ACTGAGG
642 CATTTCGTCGGTTGGCTAAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGAAC-GAGG
* ** ** * *
12792746 GTTGCGACAGCAGCATCGGTAGCATGCAGAGGGGGACCCGGTCGATC
706 GTTGCAACAGCAGCATCGACAGCACCCAGAAGGGGACCCGGCCGATC
12792793 CCCAGCTTGC
Statistics
Matches: 651, Mismatches: 92, Indels: 19
0.85 0.12 0.02
Matches are distributed among these distances:
765 2 0.00
766 117 0.18
767 292 0.45
768 166 0.25
769 74 0.11
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (766 bp):
ACATGCTGGGCTGAAGCATGTACTGGTGCCACATTTTTCTTCGTCGAGGCACCATCATCGGAGCA
TCGCCAGAGAACCTGACAGGCGGTATAGGGGTTCCAACGATCCGGGGGGCCAGGGGGTGTGCGCA
CATGATGTCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCTGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAAGCCAGTAAAGTGTT
TGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATT
TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTATAGCGCCAAAACACCTTC
CGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAA
AATGCCATTAGCACGCAAAAATATGAAGATGTACCTAAACCCACCAACCACCATATCGATCCACA
GCTTGCACATCCCGTCTCTCTGACCAACGTAGTGCCCACCCGCCCGGCCGCCCGCTCATTTCGTC
GGTTGGCTAAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGAACGAGGGTTGCAACAG
CAGCATCGACAGCACCCAGAAGGGGACCCGGCCGATCGGACCAGTCCAAGC
Found at i:12794218 original size:720 final size:724
Alignment explanation
Indices: 12792829--12794357 Score: 2172
Period size: 720 Copynumber: 2.1 Consensus size: 724
12792819 GTCGACTGAG
* * * * * * *
12792829 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAATCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
12792894 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCCATGTCCTGGTGCCACATTTTTCTTTG
66 CCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGCCATGTCCTGGTACCACATTTTTCTTCG
* * ** * ***
12792959 TCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCA
131 CCAGGGCACCATCACCGGAGCATCACCAGAGAACCTGACCGACGACATTGGGGTTCCAACGATCA
* **
12793024 GGGTGGCCGAGGGGGTGTGCACACATGATTTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
196 GGGTGGCCGAGGGGGTGTGCACAAATGAGGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * **
12793089 CCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
261 ACCCTATCCCTCATCAAACCTCGAGAACTCACACCCAATTAAAGAGCATTTGAGATTTTACAGGT
* *
12793154 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATTGTGACACTTTTTTCAAAAGGTCACAAAATCTT
326 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTT
* *
12793219 GTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
391 GTAAACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGCATCACGTCTA
* * *
12793284 CCAAGCTTGGAGCCAAAACTCCTCCCGAAAAAATTGTAAAAAATCTCGAACCGTAAAAAGTTTCA
456 CCAAGCTTGGAGCCAAAAATCCTCCCAAAAAAATTGTAAAAAATATCGAACCGTAAAAAGTTTCA
* *
12793349 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACC
521 AAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
12793414 ATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAAC
586 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCAAAAC
* * * * *
12793479 CCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCATCTTTCTAGCC-G-G-A-G-GAGTGC
651 CCACCTACCACCATATCGATCCACAGCTTGCGCATCCCATCTCTCTAGCCGGCGAATGCGACTGC
*
12793539 CTGCCCGCC
716 CCGCCCGCC
* * *
12793548 CGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * ** *
12793613 CCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGAG-CTTGTGCTGGTACCATGTTTTTGTTC
66 CCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCG-GCCATGTCCTGGTACCACATTTTTCTTC
* * *
12793677 GCCAGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTTCAACGATC
130 GCCAGGGCACCATCACCGGAGCATCACCAGAGAACCTGACCGACGACATTGGGGTTCCAACGATC
* * *
12793742 GAGGG-GGCCGGGGGGTGTGTGCGCAAATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
195 -AGGGTGGCCGAGGGG-GTGTGCACAAATGAGGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
*
12793806 GGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCAATTAAAGAGCATTTGATATTTTACA
258 GGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCAATTAAAGAGCATTTGAGATTTTACA
* * *
12793871 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTCACAAAAT
323 GGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAAT
* * **
12793936 CTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATGAAAATACAAGCATCACGT
388 CTTGTAAACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGCATCACGT
* * * * * *
12794001 CTACCAAGTTTGGGGCTAAAAATCTTTCCAAAAAAATTTTAAAAAATATCGAACCGTAAAAAGTT
453 CTACCAAGCTTGGAGCCAAAAATCCTCCCAAAAAAATTGTAAAAAATATCGAACCGTAAAAAGTT
* * *
12794066 TCGAGAATCATGAAAAATAGAAAACGAGTCGTCTTACCTTGAAACTTCACGTGAAGGCTTAAGGG
518 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGG
*
12794131 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAA
583 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCAA
* * ** *
12794196 AAGCCACCTACCACCATATCGATCCACAGCTTGTGCATCCTGTCTCTCTGGCCGGCGTAATGCCC
648 AACCCACCTACCACCATATCGATCCACAGCTTGCGCATCCCATCTCTCTAGCCGGCG-AATG--C
*
12794261 GCCTGCCCGCCCGCC
710 GACTGCCCGCCCGCC
* * * *
12794276 CGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*
12794341 CCGGACCGAAGGTTGCG
66 CCGGACCGAGGGTTGCG
12794358 ATAGCAGGAT
Statistics
Matches: 709, Mismatches: 90, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
719 171 0.24
720 449 0.63
721 1 0.00
722 1 0.00
724 1 0.00
725 1 0.00
728 85 0.12
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (724 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGCCATGTCCTGGTACCACATTTTTCTTCG
CCAGGGCACCATCACCGGAGCATCACCAGAGAACCTGACCGACGACATTGGGGTTCCAACGATCA
GGGTGGCCGAGGGGGTGTGCACAAATGAGGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
ACCCTATCCCTCATCAAACCTCGAGAACTCACACCCAATTAAAGAGCATTTGAGATTTTACAGGT
TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTT
GTAAACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGCATCACGTCTA
CCAAGCTTGGAGCCAAAAATCCTCCCAAAAAAATTGTAAAAAATATCGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCAAAAC
CCACCTACCACCATATCGATCCACAGCTTGCGCATCCCATCTCTCTAGCCGGCGAATGCGACTGC
CCGCCCGCC
Found at i:12794274 original size:4 final size:4
Alignment explanation
Indices: 12794257--12794286 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
12794247 CCGGCGTAAT
*
12794257 GCCC GCCT GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
12794287 TCATTTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.27, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:12794495 original size:26 final size:26
Alignment explanation
Indices: 12794466--12794518 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12794456 GGTTGCTTAG
* * *
12794466 GCATACGGAGTTCATTGCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12794492 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12794518 G
1 G
12794519 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12794750 original size:26 final size:26
Alignment explanation
Indices: 12794711--12794762 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12794701 ACTTGGCCCA
*
12794711 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGATCATTCCCAGTCTAAG
12794737 CATACGGAGATCATTCCCAGTCTAAG
1 CATACGGAGATCATTCCCAGTCTAAG
12794763 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGATCATTCCCAGTCTAAG
Found at i:12794924 original size:244 final size:244
Alignment explanation
Indices: 12794467--12794953 Score: 584
Period size: 244 Copynumber: 2.0 Consensus size: 244
12794457 GTTGCTTAGG
* * * * *
12794467 CATACGGAGTTCATTGCCATTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGAAGATCATTCCCAGTCTAAGATCAGACCAGACC
* ** * *
12794532 GAGGGTTACGGTAGCACATGCTGGGCTTACGCATGTGCTGGTGTCACATTTTCCTTCACCGGGGC
66 AAGGGTTACGACAGCACATGCTGGGCTTACGCATGTGCTGGTGCCACATTTTCCTTCACCGAGGC
* * ** **
12794597 ACCATCGTCGGAGCATCGTAGGAGAACCTCACCGACAGCATTGAGGTTCCGGTGATCGAGGGGTC
131 ACCATCGCCAGAGCATCACAGGAGAACCTCACCGACAGCATTGAGGTTCCGACGATCGAGGGGTC
* * * *
12794662 GGGGCGGGTGTACGCACATGATGTGCGATGGGTGTTGCTACTTGGCCCA
196 GGAGCAGGTGTACGCACATGATGTGCGATAGGTGCTGCTACTTGGCCCA
*
12794711 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGACCAGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGAAGATCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * * *
12794776 AAGGGTTGCGACAGCACTTGTTGGGC-TAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGG
66 AAGGGTTACGACAGCACATGCTGGGCTTA-CGCATGTGCTGGTGCCACATTTTCCTTCACCGAGG
* * * * * * *
12794840 CACCATTGCCAGAGCATCACCGGAGAACCTGACTGGCAGCATT-AGGGTTTCGACGATCGGGGGG
130 CACCATCGCCAGAGCATCACAGGAGAACCTCACCGACAGCATTGA-GGTTCCGACGATC-GAGGG
* * *
12794904 GTCGGAG-AGGTGTGCGCACATGATGTGCGCTAGGTGCTGGTACTTGGCCC
193 GTCGGAGCAGGTGTACGCACATGATGTGCGATAGGTGCTGCTACTTGGCCC
12794954 TTATATTGGC
Statistics
Matches: 202, Mismatches: 38, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
243 3 0.01
244 189 0.94
245 10 0.05
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (244 bp):
CATACGGAGTTCATTCCCAGTCTAAGCATACGAAGATCATTCCCAGTCTAAGATCAGACCAGACC
AAGGGTTACGACAGCACATGCTGGGCTTACGCATGTGCTGGTGCCACATTTTCCTTCACCGAGGC
ACCATCGCCAGAGCATCACAGGAGAACCTCACCGACAGCATTGAGGTTCCGACGATCGAGGGGTC
GGAGCAGGTGTACGCACATGATGTGCGATAGGTGCTGCTACTTGGCCCA
Found at i:12796521 original size:26 final size:26
Alignment explanation
Indices: 12796485--12796536 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12796475 TTGACTTAGA
12796485 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
12796511 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12796537 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:12797372 original size:900 final size:899
Alignment explanation
Indices: 12795610--12806385 Score: 9413
Period size: 903 Copynumber: 11.9 Consensus size: 899
12795600 GTTGACTTAG
* * * *
12795610 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12795675 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGTACCATCGTCGGAGCATCATCGGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
12795740 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGTGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
12795804 CGATGGGTGCTGGTCCTTGGCCTTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12795869 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12795934 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
12795999 TGCTTGCCAAGAAAAATACACGGATCACGTCTACAAAGCTTGGGGCCGAAACTCCTTCTGGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CGAAAA
* * * *
12796064 ATTTTTGAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12796128 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12796193 CATTGGCATGCAGAAATATGAAGATATGCCTAAACCCATCAACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** ** * * * *
12796258 CGCATCCTGTCTCTCTTGCCGATGTAGTGCGTGCCCGCCCGTCTGCTCGTTTCGTCAGTTAGCTT
648 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
12796323 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC-GAACTGAGGGTTGTGGCAGCAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGCAGGATTG
* * * * * *
12796387 ATAGCACGTAGAGGGGGACCCGACTGATCCTCGGCATGCACATCCCGCCCCTCTGGCCGGCTAAG
777 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAG
* *
12796452 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
12796510 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGGGAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
12796575 CTTGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCAGGGCATCATCGTCGGAGCATCGTCAAAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
12796640 ACCTGACTGGTGACATTGGGGTTCCGGTGATCGGGGTGGCCGGGCGGGGTGTGCGCATA-GATGT
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGG-GGCCGGG-GGGGTGTGCGCACATGATGT
* * * * *
12796704 GCGATGGGTGCTGGTACTTAGCCCCTATATTGGCGCCTTATCCCTCATCAAACCTCTAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
12796769 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12796834 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * *
12796899 GTGCATGCCAAAAAAAATACCCGGATCACATCTACCAAGTATGGGGCCAGAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
12796964 AATTTTAAAAAATCCCGAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCC
454 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
12797029 TGCCAAGAAAATTCACGTGAAGACTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
12797094 ATTGGCATGCAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12797159 ACATCTCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTA
649 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
12797224 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATTGAC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGAC
* * ** ** **
12797289 AACACGCAGAGGGGGACCCAACCGATCATCGGCTTGCACATCCCGCCCCTCTGGCCAACAAAGCG
779 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCG
*
12797354 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12797410 GTATACGTAGTTCATTCCCAGTCTAAGATC-AAACTGAGTCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGGTTGCGGCAGCACATGCTGG
* * *
12797474 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGACGGAG
65 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * **
12797539 AACCTAACCGACGACATTGGGGTTCCGGCGATC-GGGGGCC--GGGGG-GCACGCACATGATGTG
130 AACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
12797600 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAATCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12797665 ACCCCCTTAATGAGCATTGGAGATTTTGCAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12797730 GGGGACACTTTTTTCAAATGGTCACTAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12797795 TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGG-CAAAACTCCATCCGAGAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12797859 ATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCT
455 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12797923 TGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGT
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12797988 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12798053 ACATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCTGCCAGCCCGCTCGTTTCGTCGGTTGG
649 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
12798118 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGA-TCGAGGGTTGCGGTAGTAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGCAGGA
* * * * *
12798182 TT-AGCAGGATGCAGAGGGGGACCCGGCCGATCCCCGGCTTG-GCATCCCGCCCCTATGGCCGGC
774 TTGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGC
* *
12798245 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
12798307 GCATACGGAGTTCATTACCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTGGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
12798372 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCGTTGGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
12798437 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCCGAGGGGTTGTGCGCACATGATGTC
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTG
*
12798502 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12798567 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGACAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12798632 GGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * * *
12798697 TGCATAACAACAAAAATACAAGGATCACATTTACCAGGTTTGGGGCAAAAATTCCTTTCC-AAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAA
* * ** ** * *** ** *
12798761 AGTTTTAAAAAATCTTGAACCGTAAAAAG--TC---AATCCCCG--ACTTGCGCATCCCG-CCCC
454 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAAT-CGTGAAAAAT-AG-AAAACGAGTCG
* ** * * * * * ** *** * * * *
12798818 TCTGGCC-TGTTGAGTGCCCGT-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT-CATT
516 TCTTGCCATG-AAACTTCACGTGAAG---GCTT-AAGGGACCA-TT--G--TATGAATTTACA-A
* * * ** * *** ** * * ** * *
12798880 CCCAGTCTAAGATCGG-AGCGGACA--AAGGGTTGCGGTAGCACGTGCTGGGCTCGA-GCATGTG
570 GCCA-T-AAAAAT-GGCATTGG-CATGCAGAAAT-ATGAAG-A--TG-T-GCCTAAACCCA---C
**** * *** * * * * *
12798941 CTGGTGCCGTAATTTTTTGCATCGG--GGCACCATCACCGGAGAAC-CTAACCGG-CGGCATTGG
622 CTACCACCCT-A-TCGATCCA-CGGCTTGCA-CATC-CC---G-TCTCT--CTGGCCGGC---GT
* * * * *** * *** * * * * * * * * *
12799002 GGTTCCGACGATCAGGAGGCCGGGGGGTGTGCGCACATGATGTGC-GATGG-GTGCTG-GTAC-T
673 AGTGCC--CG-CCCGCCCGCCCGCTCGT-TTCG-TC-GGTTG-GCTTA-GGCATACGGAGTTCAT
* * ** * *** * * * * *
12799063 TGGCCCTTGTATGAATTTCA-AGCCATAAAAATGGCATTG-GAACA-CAGAAATATGAAGATGTA
730 T--CCC-AGTCT-AAGATCAGA-CCAGACTGA-GG-GTTGTG-GCAGCAG-GAT-TG-ACA-GCA
* ***** * * * * * * *
12799125 C-CTAAACCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTAGCCGG-TGTAG
783 CGC---A-GA-GGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTG-A-
* * * * *
12799188 TGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGAAGTTCATTCCCAGTCTA
841 -----G--CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
12799253 A
899 A
* ** * * * * * *
12799254 G-ATTGGACCAGACCGAGGGTT--GTGGCAG-C-AGGATTGGCAACAGGCTGAGGG-GGACCCGC
1 GCA-T--A-C-G---GA--GTTCATTCCCAGTCTAAGATCGG-ACCAGACCGAGGGTTG---CG-
* * * ** * * * ** *
12799313 CGATCCCTGACTTACGTATCCCGCCCCTCT-GGC-CG-GCTGAGCGCCCGC-GTGCTCGTTTAGT
51 -G----CAG-C--AC--ATGCTG-GGCT-TGGGCATGTGCTG-GTG-CCGCATTTTTC--TTCGT
* * * * * * * * * ***
12799374 -GGGTTG-ACTTAGGCATACGGAGTTCATTC-CCAGTGTAAGCAT-A-CGGAGTTCATTCCCAG-
100 CGGG--GCAC-CA-TCGT-CGGAG--CA-TCGTCGGAG-AA-CCTGACCGGCG-ACATT-GGGGT
*** * ** * * * * * *** *
12799433 T-CTAAGATCGGATCGGATC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
153 TCCGGCGATCGG--GGGGCCGGGGGGGTG-TGC-GCACATGATGTGCGATGG---GTGCTGGTAC
** * * * * * * * * * * ** **
12799496 -T-GCATTTTTCTTCATCGGGGCACC-AT-CGTCGGAGC-ATCGTTGGCGAAC-CTGACCAGCTG
211 TTGGC--CCTT-AT-AT-TGGCCCCCTATCCCTC--ATCAAAC-CTCGAGAACTCACACCCCCT-
* ** ** ****** *** ** ** * *
12799555 CATTG-GGGTTCCTGCA-ATCGGGGGGGCCGGGGGGGAGTCTACGCACATGATGTATGATGGGTG
267 TAAAGAGCATT--TG-AGATTTTACAGGTTTGCTGCCAG--TA-GC-C---AT-TA--AAGTGT-
* * * * ** ** *
12799618 CTGGTACT-TGG-CCCTTATATTGGTCCCCTATCCCTCATC-AAACCTTGAGAACTCACACCCCC
318 CT-GAAATGGGGACACTT-T-TT--T--CAAAT-GGTCA-CAAAATCTT--G---T-ACA----C
* ** * * * ** * *
12799680 TTAAAGAGCATTT-G-AGATTTTATAGGTTTGTTGTCAGTAG-CTATTAAAGTGTCTGAAATGGG
364 TT--CGAGTTTTTAGCTGAATTT-T---TTTG-TG-CA-T-GCCAACAAAAAT-AC---AA---G
** * ** * * * * *** ** *** **
12799742 GA-CATATTTTTCAA--AT-GGTCACAAAATCTTCTACACTTCAAGTTTTTAGCTGAATTTTTTT
412 GATCACGTCTACCAAGTTTGGGGC-CAAAA-CTCCTTC-CGAAAAAATTTTA----AAAAATCCT
* * * *** * * * ** * *** * ** * *
12799803 GAGCATGCCAAAAAAAATAAAAGAATCACTCCTACCAAGTTTG-GGGCTAAAACTTCTT-CCGAA
470 GAAC-CG-TAAAAAGTTTCAAA-AATC-GT--GA--AAAATAGAAAAC-GAGTCGTCTTGCC-AT
* * *** * ** ** ** * * **
12799866 GAAATTTTA-AAAAATGCCGAACCGTAAAAAGTT-T-TGAAAATCGTGA-AA--AATAAAAAACG
525 GAAACTTCACGTGAAGGCTTAA--GGGACCA-TTGTATG--AAT--TTACAAGCCATAAAAATGG
* * * * * ** *** ** * *
12799925 -AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCC-A
583 CA-TTGGCATG-CA-GAAA--T-A--TGAA----GATGTG-CC--TAAACCCACCTACCACCCTA
*** * * * *** * ** * ** *
12799988 T--AAAAATGGCATTGGCAC--GCAG-AAATATGAAGATGTGCCTA-AACCCACCTAC-CACTCT
633 TCGATCCACGGC-TT-GCACATCCCGTCTCTCTG--GCCG-GCGTAGTGCCCGCC--CGC-C-C-
* ** ** *
12800046 ATCAATCCATGACTTGCGCATCCCGTCTCTCTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAA
688 -GC---CC--G-C-T-CG--TTTCGTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * * * * *
12800111 GATCAGACCGGACAAAGGGTTGCAGCAACAGGA-TCAGCAGCACGCAGAGGGGGAACCGGCTGAT
741 GATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGA-CAGCACGCAGAGGGGGACCCGACCGAT
* * * *
12800175 CCCCAGCTTGCACATCCCGCCCCTCTGGGCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGAC
805 CCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
12800240 TTTGGCATACGGAGTTCATTCCCAGTCTAA
870 TTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12800270 GCATACGGAGTTCATTCCCAGTCTAAGATCCGAGCGGATCGAGAGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
12800335 CTTGGGCATGTGCTGGTTCTACATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
12800400 ACCTGACCGAC-ACCATTGGGGTTTCGACGATCGGGGGGGCCGGGGAGGTGTGCGCACATGATGT
131 ACCTGACCGGCGA-CATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *** * * *
12800464 GCAATGGGTGCTGGTACTTTAACCTTATGTTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* ** * *
12800529 CAACCCCTTAAAGAGCATTTGAGATTTTACAAATTTCCTGCCAGTAGCCATTAAAGTGTCCGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
12800594 CAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
12800659 TTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAAATCCTTTTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * **
12800724 AATTTTAAAAAATCCTAAACTGCAAAGAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
12800789 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ***
12800854 ATTGACACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12800918 AGCATCCCATCTCTCTAGCCGGCGTAGTTCCCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTT
649 A-CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** *
12800983 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TCGAGGATTGTGGTGGCAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGCAGGATTG
** * ** * * *
12801047 GTAGCACGCAGAGGGGGACCC-AGCCGATCCCTGGCAAGCACATCCTGCCCCTCTGGCTGGCTAA
777 ACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGA
* * * * *
12801111 ACGCGCGTACGCTCATTTC-------G--TT-GG--T--TGA---C-TT---AG-----
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12801144 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * **
12801209 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCCGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** * * * * *
12801274 ACCTGATCGACGGTATTGAGGTTTCGACGAT-AGGGGGTC-GGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* **
12801337 GATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCTGTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
12801402 CCCCCTTAAAGAGCATTTGAGATTTTACATGCTTGCTGCCAGTAGCCATTGAAGTGTCTAAAATA
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12801467 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTGTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * **
12801531 GCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGTACCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
12801596 TTTTAAAAAAT-CTCGAACCTTAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
456 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12801660 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12801725 TTGGCATGTAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* *
12801790 CATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCTCGCCTACCCGCCCGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * ** ** * * *
12801855 TTAGGCATACGGAGTTCTTTCCCAGTATAAGATTGGTCTGGACCAAAGGTTGTAGCAGTAGGATT
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATT
* * ** * ** * *
12801920 GGCAGCACGCAGAGAGGGACCCGACCGATCCCCAACTTGCGCATTTCGCCCCTTTGGTCGGCTGA
776 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGA
*
12801985 GCGCCCGCACGCTCGTTTCGT-GGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12802043 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTGTGGTAGCACATGCTCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
*
12802107 GCTTGGGCTTGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGAG
65 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * * *
12802161 AACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGTCGGGCGGGGGTGTGCACCCATGATG
130 AACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGG-CCGG-GGGGGTGTGCGCACATGATG
*
12802226 TGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12802291 ACACCCCCTTAAAAAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12802356 ATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
12802420 TGGGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTTCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
12802485 AAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
453 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12802550 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
12802614 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCAACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12802679 CGCATCACGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCACTCGTTTTGTCGATTGGCTT
648 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
12802744 CGGCATACGGAGTTCATTCCCAGTATAAGAT-TGTACCAGACTGAGGGTTGCGACAGCAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCAGGATTG
* * * ** *
12802808 ACGGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAG
777 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAG
* * *
12802873 TGCCCACACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
12802931 GCATACAGAGTTCATTCCCAGTCTAAGTTCAGACTGGACCGAGGGTTACAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * * *
12802996 -TTCGAGCATCTTCTGGTGCCGTATTTTTCTTTGCCGGGGCATCATCGTCGGAGCATTGCCAGAG
66 CTT-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* ** * * *
12803060 AACCTGACCGACGGTATTAGGGCTT-CGGCGATCGGGGGCCCGGTGGGGGTGTACGCACATGATG
130 AACCTGACCGGCGACATT-GGGGTTCCGGCGATCGGGGGGCCGG-GGGGGTGTGCGCACATGATG
*
12803124 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12803189 ACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * *
12803253 ATGGGGACACTTTTTTCAGATGGCCACAAAATCTTGTACACATAGATTTTTTAGATGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * *
12803318 TGTGCATGCCAACAAAAATAGAAGGATCAATTCTACCAAGTTTCGGGCCAAAACTCCTTTC-AAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * * *
12803382 AAAATTAAAAAATATCCCGAATCGCAAAAAGTTTCAAAAATCATGAAAAGTAGAAAACGAGTCAT
453 AAATTTTAAAAA-ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
12803447 CTTGCCATTAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
12803512 GCATTGGCA--CAGAAATATGAAGATGTGCCTAAAGCCCACCTACCACCCCCTATCGATCCATGG
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCCACCTACCA--CCCTATCGATCCACGG
* * *
12803575 CTTG---ATACCGTCCTCTCTGGCCCGGCTTAGTGCCCGCTCGCCCGCCCGCCCACTCGTTTCGT
644 CTTGCACATCCCGT-CTCTCTGG-CCGGCGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGT
* * * *
12803637 CGGTTTGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCT-GT
703 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG-TGGC
* * * * **
12803701 AGCAGGA-TCAGCAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGCTCATCCCATCCCTCT
767 AGCAGGATTGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCT
* ** * * * *
12803765 AGCCAACTGAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGT
831 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
12803830 CAAA
896 CTAA
* *
12803834 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * ** **
12803899 CTCGGGCATGTGCTGCTGCCGCATTTTTCTTCACCAGGGCACCATTGTCGGAGCATCACCGTTGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
12803964 ACCTGATCGACGGCATTGGGGTTCCCGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
12804029 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCAC
* *
12804093 ACTCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12804158 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
12804223 TGCATGCTAAGAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12804288 AGTTTAAAAAATCCTGAACCGTAAAAAGTTTCAACAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
12804353 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12804418 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * * *
12804483 CATCCCGCCTCTTTGGCCGGTGTAGTGCCCGCTCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** **
12804548 TTAGGCATACAGAGTTCATTCCCAGTTTAAGATTGGACCAGACTGAGGGTTGCAGCAGCAGGATT
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATT
* * ** *
12804613 GGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCGTCCCGCCCCTCTGGCCGGCTGA
776 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGA
*
12804678 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12804737 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12804802 CTCGGGCAAGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** *
12804856 ACCTGATCGGCGACATTGGGGTTAAGGCGATCGGGGGG-CGGGGGGGTGTGCGCACATGATATGC
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
12804920 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12804985 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12805050 GGGACACTTTTTGCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12805115 GCGTGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTATCCGAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAA
12805179 ATTTT-AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12805243 GCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * ** * *
12805308 TTGGCACGTAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCAATGTACGGCTTACG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * * * * * * * *
12805373 CATCCCGTCTCTCTAGCAGGCATAGTGCTCGCCCGTCCGCCCACTCGTTTCGTTGATTGCCTTAG
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
12805438 GCATACAGAGTTCATTTCCAGTCTAAGATC-GAACCAGACTGAGGGTTGTGGCCGCAGGATCCG-
715 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCAGGAT-TGA
* * * * * *
12805501 CAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTTGC-CATCCCGCCCCTCTAGCCAGTTGAGT
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
12805565 GACCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
12805622 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12805687 CTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGTCGGGGTACAATCG-C----CA------GAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** * * **
12805741 ACCTGACAGGCGACATTGGGGATATGACGATCGGGGGTGTCGGGGGGGTGTATGCACATGATGTG
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
*
12805806 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12805871 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGACATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12805936 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTGTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
*
12806000 GTGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** *
12806065 AATTTTGAAAAATCCTGAACCGTAAAAAGTTTTGAAAAT-GATGAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGTC
12806129 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12806194 CATTGGCATGCCA-AAATATGAAGATGTGCCTAAACCCGCATACCACGCTATCGATCCACGGCTT
583 CATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
12806258 GCGCATCCCGTCTCCCTGGCCGACGTAGTGCCCGCCTGCCCGCCCACCCGTTCGTTTCGTCGGTC
647 GCACATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
12806323 GGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCA
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCA
12806386 CATGCTGGGC
Statistics
Matches: 7951, Mismatches: 1464, Indels: 930
0.77 0.14 0.09
Matches are distributed among these distances:
869 2 0.00
870 265 0.03
871 190 0.02
872 7 0.00
873 2 0.00
874 278 0.03
875 1 0.00
879 2 0.00
880 1 0.00
882 4 0.00
883 2 0.00
885 207 0.03
886 124 0.02
887 421 0.05
888 353 0.04
889 8 0.00
890 203 0.03
891 417 0.05
892 434 0.05
893 4 0.00
894 223 0.03
895 231 0.03
896 3 0.00
897 324 0.04
898 453 0.06
899 169 0.02
900 824 0.10
901 261 0.03
902 360 0.05
903 931 0.12
904 40 0.01
905 31 0.00
906 11 0.00
907 4 0.00
908 12 0.00
909 5 0.00
911 3 0.00
912 3 0.00
913 5 0.00
914 12 0.00
915 13 0.00
916 15 0.00
917 18 0.00
918 6 0.00
921 7 0.00
922 4 0.00
923 4 0.00
924 8 0.00
925 13 0.00
926 10 0.00
927 17 0.00
928 23 0.00
929 30 0.00
930 14 0.00
931 7 0.00
932 1 0.00
933 3 0.00
934 7 0.00
935 8 0.00
936 3 0.00
937 7 0.00
938 18 0.00
939 17 0.00
940 3 0.00
941 15 0.00
942 3 0.00
943 8 0.00
944 3 0.00
945 1 0.00
946 3 0.00
947 60 0.01
948 2 0.00
949 3 0.00
950 4 0.00
951 1 0.00
952 12 0.00
953 13 0.00
954 13 0.00
955 2 0.00
956 3 0.00
957 1 0.00
958 3 0.00
959 1 0.00
961 1 0.00
962 2 0.00
963 1 0.00
964 11 0.00
965 7 0.00
966 10 0.00
967 12 0.00
968 6 0.00
969 6 0.00
970 6 0.00
971 13 0.00
973 22 0.00
974 15 0.00
975 17 0.00
976 2 0.00
977 2 0.00
978 12 0.00
979 6 0.00
980 16 0.00
981 22 0.00
982 23 0.00
983 14 0.00
984 6 0.00
985 13 0.00
986 2 0.00
988 16 0.00
989 17 0.00
990 20 0.00
991 2 0.00
992 13 0.00
993 4 0.00
994 6 0.00
995 7 0.00
996 11 0.00
997 9 0.00
998 7 0.00
999 11 0.00
1000 1 0.00
1001 2 0.00
1002 2 0.00
1004 1 0.00
1005 3 0.00
1006 1 0.00
1007 3 0.00
1008 2 0.00
1009 14 0.00
1010 10 0.00
1011 12 0.00
1012 1 0.00
1013 5 0.00
1014 3 0.00
1015 2 0.00
1016 59 0.01
1017 2 0.00
1018 1 0.00
1019 3 0.00
1020 9 0.00
1021 3 0.00
1022 16 0.00
1023 4 0.00
1024 52 0.01
1025 35 0.00
1026 66 0.01
1027 50 0.01
1028 37 0.00
1029 38 0.00
1030 48 0.01
1031 54 0.01
1032 51 0.01
1033 55 0.01
1034 43 0.01
1035 53 0.01
1036 32 0.00
1037 27 0.00
1038 26 0.00
1039 19 0.00
1040 20 0.00
1041 15 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGACAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12797415 original size:26 final size:26
Alignment explanation
Indices: 12797386--12797436 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12797376 TGACTTAGGC
12797386 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
*
12797412 ATACGTAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12797437 ATCAAACTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:12798311 original size:26 final size:26
Alignment explanation
Indices: 12798281--12798333 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12798271 GTTGACTTAG
* *
12798281 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAATCTAA
*
12798307 GCATACGGAGTTCATTACCAATCTAA
1 GCATACAGAGTTCATTACCAATCTAA
12798333 G
1 G
12798334 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAATCTAA
Found at i:12799422 original size:26 final size:26
Alignment explanation
Indices: 12799386--12799438 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12799376 GTTGACTTAG
*
12799386 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12799412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12799438 G
1 G
12799439 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12800280 original size:26 final size:26
Alignment explanation
Indices: 12800244--12800296 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12800234 GTTGACTTTG
12800244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12800270 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12800296 G
1 G
12800297 ATCCGAGCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12802053 original size:26 final size:26
Alignment explanation
Indices: 12802017--12802069 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12802007 GTTGACTTAC
12802017 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12802043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12802069 G
1 G
12802070 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12802941 original size:26 final size:26
Alignment explanation
Indices: 12802905--12802957 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12802895 GTTGACTTTG
*
12802905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12802931 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12802957 G
1 G
12802958 TTCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12805632 original size:26 final size:26
Alignment explanation
Indices: 12805596--12805648 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12805586 GTTGACTTAG
12805596 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12805622 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12805648 G
1 G
12805649 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12808097 original size:26 final size:26
Alignment explanation
Indices: 12808068--12808120 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12808058 GTTGACTTAG
12808068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12808094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12808120 G
1 G
12808121 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12809451 original size:900 final size:898
Alignment explanation
Indices: 12807181--12815011 Score: 8351
Period size: 864 Copynumber: 8.8 Consensus size: 898
12807171 TGTGGGCTGA
* * * * * * *
12807181 CTAAGGCATACAAAGTTCATTCCCAGACTAAGATCAGATCGGACCGAAGGTTGTGGCAGCACATG
1 CTAA-GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG
* * * * *
12807246 CTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCCGGGCATCGCC
65 CTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCT
* * ** * * * *
12807311 AGA-GACCTGACTGAAGGCATTGTGGTGCCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATA
130 GGAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
*
12807374 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
195 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
** * ** *
12807439 CTTGCACCCCCTTAAAGCGCATTTGAGATTTTACAAATTTGCTGCCAATAG-CATTAAAGTGTCT
260 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
12807503 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATGT
325 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
12807568 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCATCCA
390 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * * * *
12807633 AAAATATTTTTAAAAATCCCGAACCGTAAAAAGGTTCAAAAATCATGAAAAATAGAAAATGAGTC
455 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
12807698 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
520 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
12807763 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
585 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
12807828 TTGCGCATCCCATCTCTCTGGCCGACGTAGTGGCCACCCGCCCGCCCGTCTGCCCGCCCGCTCAT
650 TTGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCG-CC--C-GCCCGCCCACTCGT
* * * *
12807893 TTCGTC-GGTGTCTTAGGCATACGGAGTTCATTGCCAATCTAAGATCAGACCAGACTGTGGGTTG
703 TTCGTCAGTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGAC-GAGGGTTG
* * * *** * *
12807957 TGTCAGCAGGATCGACAGCATGCAGAGGGGGACCTGGTCGATTTTCGGTTTGCGCATCCCACCCC
767 TGTC-GCAGGATCGGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCC
** * * * *
12808022 TCTGGCCAGTTGAGC-ACCCGCACGCTCGTTCCGTGAGTTGACTTAGGCATACGGAGTTCATTCC
831 TCTGGCTGGCTGAGCGA-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
12808086 CAGT
895 CAGT
* * * * *
12808090 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGAGAGCACATGA
1 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
* * * *
12808155 TGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCAACGTCT
66 TGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCG-CT
* * * * * * ** * **
12808219 -GAGAACCTGACCGACGGTAATGGGGTTCC-AGCGATCGGGGGAGCTGGGGCAATGTTTTTGCAC
130 GGAGGACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGG--GGGTGTGCGCAC
* * ** *
12808282 ATGATGTGCGATGGGGGCTGGTTCTTGGCCCTTATATTCACCCCCTATCCCTCAGCAAACCTCGA
192 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
** * *
12808347 GAACTCACACCCCCAAAAAAAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
257 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
12808412 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
322 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
12808477 TTTTTTTGTGCATACCAAAAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAAGTCCTT
387 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
12808542 CCAAAAAAATTATAAAAAATCCCAAACCGCAATAAGTTTCAAAAATCGTGAAATATAGAAAACGA
452 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
12808607 GTCGTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
517 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
12808672 AAATGGCATTGGC-TCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCA
582 AAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * ** * *
12808736 CAGCTTGTGCATCCCGTCTCTCTTACCAACGTAGTGCCCGCCCGCCCGCCCACTCGTTTTGTCAG
646 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCAG
* * *
12808801 TTGCCTTAGGCATACGGAGTTCATTCCCAGTCTACGATCGGACCAGACGGAGGGTTGTAGTCGCA
711 TTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGAC-GAGGGTTGT-GTCGCA
* * * * * * *
12808866 GGATCGGTAGCACGAAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCACCCCTTTGGCTA
774 GGATCGGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTG
** *
12808931 GCTGAGCGATTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
839 GCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
* * * * *
12808991 ATAAGTATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCACATGC
1 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
* * * ** * *
12809056 TGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCTCCATCGTTAAAGCATCGTTG
66 TGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCTG
* *
12809121 GAGGACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
131 GAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * * *
12809186 TGTGCGATGGGTGCCGGTACTTGGCCGTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAAC
196 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
12809251 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
12809316 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * ** * * **
12809381 TTTATGCATGCCAATAAAAATACAAGGATCATTTCTACCAAGTTTGGAGG-AAAAACCCCTTCTG
391 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCA
* * ** *
12809445 AAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
455 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * ** * *
12809510 GTCTTGCCATGAAACTTCACGTAAAGGCGTAAGAAAACATATGTATGAAATTTAATAAGCCATAA
520 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATG-AATTT-ACAAGCCATAA
* * *
12809575 CAAACTGCGCATTTGCATGCAGAAATTATGAAACATGTGCCTAAACCCACATACCAACCCTATC-
582 -AAA-TG-GCATTGGCATGCAGAAA-TATG-AAGATGTGCCTAAACCCACCTACC-ACCCTATCG
* * * * *
12809639 ATCCACGGCTTTCGCAATCGCCGTCT-TCTGGCCGACGTAGGTGCCCGCCGCGCTCGTCCGCTCA
641 ATCCACGGCTTGCGC-ATC-CCGTCTCTCTGGCCGACGTA-GTGCCCGCC-CGCCCGCCCACTCG
* * ** **
12809703 TTTCGTCAGTTTGGGC-TAGGCATACGGAGTTCA-TCCCAGTCCTAAGATGGGA-TGGATCGAGG
702 TTTCGTCAG-TT-GCCTTAGGCATACGGAGTTCATTCCCAAT-CTAAGATCAGACCAGA-CGAGG
* ** ** *
12809765 GTTGTG-CGCACAGGATCGACAGCACG-AGAGGGTTACCTGGCCGA-CTCCC-GCATGCGCATTC
763 GTTGTGTCG--CAGGATCGGCAGCACGCAGAGGGGGACCTGATCGATC-CCCGGCTTGCGCA-TC
* * * * * *
12809826 CTGCCCCTTTGG-TCGGCTGAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
824 CCGCCCCTCTGGCT-GGCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
12809890 TCATTCCCAGT
888 TCATTCCCAGT
*
12809901 CTAAG-AT-C--AG---------A---T----T-GGACC--A---AGGGTTGCGGCAGCACATGC
1 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
** * * * * *
12809940 TGTCCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATTGCCG
66 TGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCTG
* * * * *
12810005 GAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGAGGGGGCCGGTGGGGGTGTGCACACATG
131 GAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATG
* * * * *
12810070 ATGTGTGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCCCATCAAAGCTTGAGAA
195 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
12810135 CTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
260 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
12810200 GAGATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTACCTGAATTT
325 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** ** * *
12810265 TTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTAAGGCCAAAACTAGTTTCG
390 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * *
12810330 AAACAATTTTAAAAAATCACGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
455 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
12810395 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAGAA
520 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
12810460 TGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
585 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
12810525 TTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGTCCGCCCGTTCGTTTCGTCGG
650 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CC-CAC--TCGTTTCGTCAG
* * ** * * *
12810590 TTGGCTTAGGCA-ATTGGAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGATTGCAGTGGC
711 TTGCCTTAGGCATA-CGGAGTTCATTCCCAATCTAAGATCAGACCAGA-CGAGGGTTG-TGTCGC
* * * * * * *
12810654 AGGATCGGTAGAACGTAGAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCT
773 AGGATCGGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT
* * * * *
12810719 GGCTGAGC-ACCCGTACACTCATATCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGT
838 GGCTGAGCGA-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
* * *
12810780 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGGCCAAGGGTTGC-AGCAGCACATG
1 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATG
* * **
12810844 CTGGGC-AGAGGCATGTGCTGGTGCCACATTTTTCATCACCGGGGCACCATCGCCAGAGCATCGC
65 CTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGC
* * * * **
12810908 TGGGGGACCTGATCGGTGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGAGGCGGTGTGCG
129 TGGAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGG-GG-GGTGTGCG
* *
12810973 CACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATGCCTCATCAAACCT
189 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12811038 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATAAAA
254 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
12811103 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
319 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
12811168 GAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
384 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
12811233 CATCCAAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
449 CTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
12811298 CAAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
514 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
12811363 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATG
579 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
12811428 CACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCACTCGTCCGCCCACTCATTTCGTT
644 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTC
* * *
12811493 GGTTGCCTTAGGC--A-GGAGTTCATTCCCAATCTAACATCAGACCAGACTGAGGGTTGTGGC-C
709 AGTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGAC-GAGGGTTGTGTCGC
* *
12811554 ATAGGATCGGCAGCACGCAGAGGGGGATCTGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
773 --AGGATCGGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
12811619 CCGGCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
836 CTGGCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
12811682 CTAAG-AT-C--AG---A----C---C---GA----A-C--A--GAGGGTTGCGACAGCACATGC
1 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
** * * *
12811721 TGGGCTCG-GACATGTGCTGGTGCCGTATTTTTCTTCATCGGGG-A-TA-CG---GCG-ATCG--
66 TGGGCTCGAG-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCT
** * * * ** * ** *
12811776 GG-GG----GGTCGG-GGGA--GGTGTGCAC-AC-AT--GATGTG-C-GATGGGTGCTG-GTAC-
130 GGAGGACCTGACCGGCGGCATTGGGGTTC-CGACGATCGGGGGGGCCGGGGGGGTG-TGCGCACA
* ** ** *
12811825 T--TG-GC-------CCTTATA-TTGGCCC-CCTA-T--CCCTC-ATCAAACCTCGAT--AA-CT
193 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC---CCTC-ATCAAACCT
* * * * *** * * * * * * * ** ***
12811871 C-ACACCCCCTGAAAGAGCATTTAAGA--TTTTACAGGTTTGCTGCCA--ATACCATTAAAGT-G
254 CGAGA---ACTCACACCCCCTTAAAGAGCATTT-GAGATTT--T-ACAGGTTTGC-TGCCAGTAG
* * ** * ***** ** ** ** *** *
12811930 TC-TGAAA-TG-GGGACACTTTTTTCA-AATGGTCAGAA-AATCTTGTACA-C-T-------TCG
311 CCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCA-AATGGTC-ACAAAATCTTGTACACTTCG
* *
12811981 AGTTTTTAGCTGAATTTGTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
373 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
12812046 GGCCAAAACACCTTCCGAAAAAATTTTAGAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGA
438 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
*
12812111 AAAATAGAAAACGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
503 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *** *
12812176 TTTACAAGCTATAAAAATGACATTGGCACATAGAAATTTGAAGATGTGCCTAAACCCACCTACCA
568 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
12812241 CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTC-AGCGTAGTGCCCGCCCGCCCGCCC
633 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGT----GCCCGCCCGCCC
* * * * *
12812305 GCCCGCTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT-CCAAGTCTAAGATCAGACCG
693 GCCCAC-TCGTTTCGTCAGTTGCCTTAGGCATACGGAGTTCATTCCCAA-TCTAAGATCAGACCA
* * * * *
12812369 GATCGAGGGTTGCAGTAGCAGGATTGGTAGCACGCAGAGGGGGACCCTG-CCGATCCCCGGCTTG
756 GA-CGAGGGTTG-TGTCGCAGGATCGGCAGCACGCAGAGGGGGA-CCTGATCGATCCCCGGCTTG
* * *
12812433 CGCATCCCGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATAC
818 CGCATCCCGCCCCTCTGGCTGGCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
12812498 AGAGTTCATTTCCAGT
883 AGAGTTCATTCCCAGT
* *
12812514 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGC-AGCAGCACATG
1 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATG
* * * * * *
12812578 CTGGGCTCGATCATGTGCTGGTGTCAAATTTTTCTTCATCGGGGCACCATCACCGGCA-CATCG-
65 CTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAG-AGCATCGC
* * * * ** *
12812641 TCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCAGGCAGGCCAGGGGGGTTGTGCGCAC
129 T-GGAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCAC
* *
12812706 ATGATGTGTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
192 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
12812771 GAACTCACAACCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
257 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
12812836 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
322 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
12812901 TTTTTTTGTGCATGCCAAAAAAAATACAATGATCACGTCTACCTAGTTTGGGGCCAAAAGTCCTT
387 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
12812966 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGA
452 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
12813031 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAA
517 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* ** * * *
12813096 AAATGGCATTGGAACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAT
582 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
12813161 GGCTTGCGCATCCCGTCTTTCTGGCCGGCATAGTACCCGCCCGCCCG----CTCCTTTCGTCGGT
647 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCAGT
* * * * ** * * * *
12813222 TGGCTTAGTCATACGGAGTTCACTCCCAATCTATGATTGGACCGGATCGAGGGTTGCGGTAGCAC
712 TGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGA-CGAGGGTTG-TGTCGCAG
* ** *** * * * *
12813287 GATCAGCAGCACGCAGAGGGGGACCTGGCCGATTTTCGACTTGCCCATCTCGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGG
* * **
12813352 CTGAGCGCCCGC-GGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGT
840 CTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
* * *
12813410 CTAAGCATACGGAGTTCATTCCCAATCTAAGAT------TGA---A----T----CAG---AT-C
1 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
* * * * *
12813454 -GAG---G-G-A--TGC-GGTGCTACATTTTTCTTCGTCAGGACACCATCGCCACAGCATCG-TC
66 TGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCT-
* * * * * * *
12813509 GGAGAACCTGATCGACAGCTTTGGGGTTCCGACGATCGGGGGTGCC-AGGGGGTGTGCGCACATG
130 GGAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
*
12813573 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GCAAA
195 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGA
* * * *
12813637 ACTCACATCCCCTTAAGGAGCATTTGAGATTTTACAGATTTGCTACCAGTAGCCATTAAAGTG-C
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * **
12813701 ATGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTATTTGAAT
324 -TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * *
12813766 TTTTTTATACATGCCAAAAAAAATACAAGGATCACGTCTGCAAAGTTTGGGGCCAAAACTCCTTT
388 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
12813831 CGAAAAAGTTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATAAAAAATAGAAAACAAG
453 CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
12813896 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
518 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*** * *
12813961 AATGGCATTGGCACATAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTACCGATCCACG
583 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
12814026 GCTTGCACATCCTGTCTCTTTGGCCGACGTAGTGCCCGCCCGTCCG----CTCGTTTCATCGGTT
648 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCAGTT
* * ** * * *
12814087 GGCTTAGGCATACGGACTTCATTCCCAATCTAAGATTGGACCGGACCGAGGCTTGCAG-CAGCAG
713 GCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGA-CGAGGGTTG-TGTC-GCAG
* * * * * * * *
12814151 GATCGGAAGCATGCATAAGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGG
* **
12814216 TTGAGC-ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCATAGT
840 CTGAGCGA-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGT
* * ** * *
12814275 CTAAGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCAAACCGAGGGTAGCGCCAGCACATGC
1 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
* * * * * * *
12814339 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACTATCGCCGGAGCATCACCG
66 TGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCTG
* * * ** *
12814404 GAGAACCCGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGG-GTGCACACATGA
131 GAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
12814467 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
196 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
12814532 TCACACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
12814597 AAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-AAATTTT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
12814661 TTTTTGCATGCCAACAAAAATATAAGAATTACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
391 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * ** *
12814726 AAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTTGAAAATCATGAAAAACAGAAAACGAGTCG
456 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
12814791 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
521 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12814856 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
586 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
12814921 TGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGT
651 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCGCCCACTCGTTTCGTCAGT
** *
12814986 TGGTTTAGGCATACGGATTTCATTCC
712 TGCCTTAGGCATACGGAGTTCATTCC
12815012 TAGTTAAGAT
Statistics
Matches: 5832, Mismatches: 817, Indels: 555
0.81 0.11 0.08
Matches are distributed among these distances:
823 1 0.00
824 286 0.05
828 14 0.00
829 20 0.00
831 6 0.00
832 164 0.03
833 27 0.00
834 13 0.00
835 20 0.00
836 11 0.00
837 8 0.00
838 4 0.00
839 1 0.00
843 1 0.00
845 2 0.00
846 3 0.00
848 1 0.00
849 9 0.00
850 3 0.00
851 1 0.00
853 1 0.00
854 1 0.00
855 1 0.00
856 4 0.00
857 1 0.00
858 59 0.01
859 5 0.00
860 2 0.00
861 4 0.00
862 5 0.00
863 2 0.00
864 607 0.10
865 65 0.01
866 75 0.01
867 7 0.00
868 1 0.00
869 5 0.00
870 3 0.00
871 1 0.00
872 3 0.00
873 6 0.00
874 8 0.00
875 24 0.00
876 86 0.01
877 62 0.01
878 48 0.01
879 105 0.02
880 16 0.00
881 15 0.00
882 11 0.00
883 8 0.00
884 120 0.02
885 345 0.06
886 2 0.00
887 2 0.00
888 1 0.00
889 6 0.00
890 4 0.00
891 2 0.00
892 282 0.05
893 194 0.03
894 91 0.02
895 21 0.00
896 91 0.02
897 147 0.03
898 21 0.00
899 2 0.00
900 393 0.07
901 275 0.05
902 218 0.04
903 14 0.00
904 10 0.00
905 129 0.02
906 300 0.05
907 18 0.00
908 170 0.03
909 509 0.09
910 101 0.02
911 160 0.03
912 366 0.06
913 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
TGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCTG
GAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCAGTTGCC
TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACGAGGGTTGTGTCGCAGGATCGG
CAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
GACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
Found at i:12810787 original size:26 final size:26
Alignment explanation
Indices: 12810758--12810810 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12810748 GTTGACTTAG
*
12810758 GCATAC-AGAGTTCATTCCCTGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
12810784 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12810810 G
1 G
12810811 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12812528 original size:26 final size:26
Alignment explanation
Indices: 12812492--12812544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12812482 GTTGACTTAG
*
12812492 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12812518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12812544 G
1 G
12812545 ATCTGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12813424 original size:26 final size:26
Alignment explanation
Indices: 12813388--12813440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12813378 GTTGACTTAG
* *
12813388 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12813414 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12813440 G
1 G
12813441 ATTGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12814290 original size:26 final size:25
Alignment explanation
Indices: 12814253--12814304 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12814243 GTTGACTTAG
*
12814253 GCATACGAAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATTC-CAGTCTAA
*
12814279 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
12814304 G
1 G
12814305 ATTGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:12816973 original size:708 final size:712
Alignment explanation
Indices: 12814279--12817190 Score: 4238
Period size: 708 Copynumber: 4.1 Consensus size: 712
12814269 CATAGTCTAA
* * * *
12814279 GCATACGGAGTTCATTCC-AGTCTAAGATTGGACCAAACCGAGGGTAGCGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
12814343 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACTATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGA
* ** *
12814408 ACCCGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGG-GTGCACACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
12814472 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12814537 CCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * **
12814602 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAAATTTTTTTT-T
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGT
* * * * *
12814666 GCATGCCAACAAAAATATAAGAATTACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* ** *
12814731 TTTTAAAAAATC-CTGAACCTCAAAAAGTTTTGAAAATCATGAAAAACAGAAAACGAGTCGTCTT
456 TTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
12814795 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
12814860 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12814925 CATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGT
650 CATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCG-CC--CCGCCCGCTCGTTTCGTCGGTTGGC
12814990 TTAG
709 TTAG
* * * *
12814994 GCATACGGATTTCATTCCTAGT-TAAGATCGGACTAGACCGATGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
12815058 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGGGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGA
** * * *
12815123 ACCTGACCGGTGGCATTGGGGTGT-CGACGATCGGGGGGGCCGGGGGGTGCGGGCACATGATTTG
131 ACCTGACCGACGGCATTGGGGT-TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12815187 CGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12815252 ACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * * * *
12815317 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAAAATTCAAGTTTTTGGTTGATTTCTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTG
* * * **
12815382 TGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAATCTCCTT-CTGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
12815446 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAAAGCAGTCGTCT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-AGTCGTCT
*
12815511 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
** * *
12815576 ATTGGCGTGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12815641 GCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCCACCCCGCCGTCCGCCTGCTCGTTTCG
649 GCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCG------CC-CCG--C-CC-GCTCGTTTCG
12815706 TCGGTTGGCTTAG
700 TCGGTTGGCTTAG
* * * *
12815719 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGGCCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
12815784 CTCGGGCATGTGCTGGTGTCAAAATTTTCTTCGTCGGGGCACCATCACCGGACCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGA
* ** * * *
12815849 ACCGGACCGACGATATTGGGTTTCCGACGATCGGGGGGGCCAGGGGGTTTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
12815914 GTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12815979 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAA-
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAAT
* *
12816042 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTG
*
12816107 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
12816171 ATTTAAAAAAATCACGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
12816236 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
* * * *
12816301 TTGGCACGCAGAAATATGAAGATGTGCATAAACCCACGTACCACCCTATCGATCCATGGCTTACG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12816366 CATCCCGTCTCTCTGGCCGGGGTAGT-GCCCG-CCCGCCCGCTTGTTTCGTCGGTTGGCTTAG
650 CATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
12816427 GCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGG
** **
12816491 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACTAGAGCATCACCAGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAG
*
12816556 AACCTGACCGACGGCATTGGGGTTCCGAC-ATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12816620 CCATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12816685 -CCCCCATAAAGAGCATTTGACATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
12816749 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGATTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTG
* *
12816814 TGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
12816879 ATTTTAAAAAATCTTGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12816944 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGTA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
** *
12817009 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12817074 CATCCCGTCTCTCTGGCCGGCGTAGT-GCCCG-CCCGCCCGCTCGTTTTGTCAGTTGGCTTAG
650 CATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** *
12817135 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACATAGGGTTGCTACAGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
12817191 AGATCGGTAG
Statistics
Matches: 1977, Mismatches: 196, Indels: 55
0.89 0.09 0.02
Matches are distributed among these distances:
706 4 0.00
707 260 0.13
708 454 0.23
709 3 0.00
710 1 0.00
712 3 0.00
713 1 0.00
715 150 0.08
716 250 0.13
717 214 0.11
720 5 0.00
721 3 0.00
722 3 0.00
723 1 0.00
724 153 0.08
725 263 0.13
726 209 0.11
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:12819763 original size:711 final size:714
Alignment explanation
Indices: 12817325--12822575 Score: 4321
Period size: 711 Copynumber: 7.1 Consensus size: 714
12817315 CTAAGCATGT
* * *
12817325 GGAGTTCATTCCCAGTCTAAGAACGAACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* ** * **
12817390 CATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATC-GTCGGAGCATCGTCAGAGAA-CTG
66 CATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCACTCGGAGCATCACCAGAGAACCTG
* * * *
12817453 ACCGACGGCATTGGGGTTTCGACAATCGAGGGGGTCGGGTAGGGGGGTGTGCGCACATGATGTGC
131 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGGC-CG-A-GGGGGTGTGCGCACATGATGTGC
* * * * *
12817518 GATGGGTGCTGGTACTTCGCCCTTATATTTGCCCCCTATCGCTCATCAAACCTCGAGAACTCAAA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * *
12817583 CCCCCTTAAAGAGCATTTGACATTTTACAGGTTTACTGCCGGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAG
*
12817648 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-ACGTTTTTAGCTGAAGTTTTTTG
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTG
* *
12817712 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12817777 ATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAGTCGTGAAAAATAGAGAACGAGTCATCTT
452 ATTTTAAAAAATCTCGAACA-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
12817842 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCAT-AAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12817906 TTGGCACGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCG
581 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12817971 CATCCCGTCTCTCTCGCTGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCATTTTGTCAGTTGGC
646 CATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCG--C-CCCGCCCGCTCGTTTTGTCAGTTGGC
*
12818036 TTAGGCATAT
705 TTAGGCATAC
* * * * *
12818046 GGAGTTCAGTCCCAA-TCCAAGATCGGACAAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGG
1 GGAGTTCA-TTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * **
12818110 GCATGTGCTGGTACGACAATTTTCTTTGTCAGGGCACCAT-TGTCGGAGCATCACCAGAGAACCT
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCACTCGGAGCATCACCAGAGAACCT
* * *
12818174 GACCGACGGCAATGGGGTTCCGACGATCGA-GGGGGCCGAGGGGCTGTGCGCACATGATGTGCAA
130 GACCGACGGCATTGGGGTTCCGACGATCGAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
**
12818238 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACATG
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
12818303 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGG
* * * * * * *
12818368 GACACTTTTTTTGAAATAGTCACAAAATCTTGTAAAATTCAAGTTTTTGGTTG-ATTTCTTTTGT
325 GACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGT
* * * *
12818432 GCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAATCTCCTTCTG-AAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
12818496 TTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAAAGCAGTCGTCTT
453 TTTTAAAAAATCTCGAA-CACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG-AGTCGTCTT
*
12818561 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
12818626 TTGGCGTGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
581 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
12818691 CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCACCCCGCCGTCCGCCTGCTCGTTTTGT
646 CATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCG------CC-CCG--C-CC-GCTCGTTTTGT
*
12818756 CGGTTGGCTTAGGCATAC
697 CAGTTGGCTTAGGCATAC
* * *
12818774 GGAGTTCATTCCTAGTCTAAGATCGAACCTGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * * *
12818839 CATGTGCTGGTATCGA-ATTTTTCTTCGTCGGGGCACCATCAC-CGGACCATCATCGGAGAACCG
66 CATGTGCTGGT-GCCACATTTTTCTTCGTCAGGGCACCATCACTCGGAGCATCACCAGAGAACCT
** * * *
12818902 GACCGACGATATTGGGTTTCCGACGATCGGGGGGGGCC-AGGGGGTTTGCGCACATGATGTGCGA
130 GACCGACGGCATTGGGGTTCCGACGATCGAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
* *
12818966 TGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACGCC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
12819031 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAAGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGG
*
12819096 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
12819161 ATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAACCTCCTTCCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
12819226 TTAAAAAATCCCAAACCACGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCG
455 TTAAAAAATCTCGAA-CACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
12819291 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
12819356 GCACACAGAAATATGAAGATGTGCATAAACCCACGTACCACCCTATCGATCCATGGCTTACGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
12819421 CCCGTCTCTCTGGCCGGGGTAGT-GCCCG-CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
649 CCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATA
12819484 C
714 C
* * *
12819485 GGAGTTCATTCCAATTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
12819550 CATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCACCAGAGAACCTG
66 CATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCACTCGGAGCATCACCAGAGAACCTG
*
12819614 ACCGACGGCATTGGGGTTCCGACGATC-AGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
131 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAT
* * * *
12819678 GGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACCCCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* * *
12819743 CCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT-TTAAAATGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAA-GGG
* *
12819807 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGATTTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
12819872 ATGCCAACAAAAATACAAGGATCACCTCTACGAAGTTTGGGACCAAAAATCCTTCCAAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
12819937 TTAAAAAATCTTGAAC-CGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
455 TTAAAAAATCTCGAACAC--AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
12820001 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGTATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
12820066 GGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCA
583 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
12820131 TCCCGTCTCTCTGGTCGGCGTAGT-GCCCG-CCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCAT
648 TCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCAT
12820194 AC
713 AC
** * ***
12820196 GGAGTTCATTCCCTGTCTAAAATC-AGACCAGAGATAGGGTTGCTACAGCAGGATCGGTAGCACA
1 GGAGTTCATTCCAAGTCTAAGATCGA-ACCAGACCGAGGG-T--T---GC-GG--C---AGCACA
** * * *** * ** ** * * * *
12820260 TAGAGGGGGACCCGGCCGATCCCCAGCGTGCGCATCCCGCTCCTCTGGCCGACTGAGTGCCCGCA
53 T-G-CTGGG-CTCGGGC-ATGTGCTG-GTGC-CA---CATTTTTCT--TCG--TCAGGGCAC-CA
* ** * * * * * * *
12820325 -CACTCGTTTCATGGGTTGACTTAG-GCATACGGAGTTCATTCCAGTCTAAGCATGTGGAGTTCA
104 TCACTCG---GA--GCATCAC-CAGAG-A-AC----CTGA--CC-GAC--GGCAT-TGG-G---G
* * **** * ** * * *
12820388 TTCCCAGTCTAAGAACGAACCAGACCGA-GGTTTGTGGCAGCACATGCTG-G-GCTTGG-GCAT-
147 TT-CC-G---ACGATCGAGGGGGGCCGAGGGGGTGT-GC-GCACATGATGTGCGATGGGTGC-TG
* * *** * * * * * *
12820448 GTGCTGGTGCCGCATT-T-TTCTTCACC-AGGGCACCATCGTCGGAGCATCGTCAGAGAACTGAC
204 GTACTTG-GCC-C-TTATATTGGCCCCCTA--TC-CC-TCATC--A--AACCTCA-AGAACTCA-
** * ** * * ** ** ** * *** * * * *
12820510 CGACGGCATT---G-GGGTTTCGACAATCGAGGGGGTCGGGTGGGGGGGTGTGCGCACATGATGT
256 C-ACCCCCTTAAAGAGCATTT-GAGATTTTA-CAGGTTTGCT--GCCAGT-AGC-CA-TTAAAGT
*** * ** * * ** *
12820571 G-C-GATGGGTGCTGGTACTTCGCCCTTATATTTTCCCCCTATCGCTCATCAAACCTCGAGAACT
313 GTCTGAAAAG-G--GG-A-----CAC-T-T-TTTT---CAAAT-GGTCA-CAAA-ATCTTGTA--
*** *** *** * * ** * *
12820634 CAAACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTACTGCCGGTAGCC-ATTAAAGTGTCTG
358 CACTTCGAGTT-TTTAGC---TGA-ATTTT-----TTT-GTG-C-AT-GCCAACAAAAAT-AC--
* * ** * * *
12820698 AAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATTTTGTACACTTCGCGTTTTTAGCTGAA
406 -AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA----CT-C-CTTC-CG-----A----AA
*** ** ** * *
12820759 GTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
450 --AAATT-T---T----A-AAAAAT-C-TCGA--ACA-C-AAAAAGTTT-----CAAAAAT-CGT
* **
12820824 CCGAAAAAATTTTAAAAAATCTCGAACAG-CAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACG
492 --G-AAAAA---TAGAAAA---CG---AGTC-----G--TC-----T--TG--CCAT---G-A--
*
12820888 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCAT-
523 A---A------C-------TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
12820952 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
572 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
12821017 CGACTTGCGCATCCCGTCTCTCTCGCTGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCATTTTG
637 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCG--C-CCCGCCCGCTCGTTTTG
*
12821082 TCAGTTGGCTTAGGCATAT
696 TCAGTTGGCTTAGGCATAC
* * * * * *
12821101 GGAGTTCAGTCCCAA-TCCAAGATCGGACAAGACTGAGGGTTACGGCAGCACATGCTGGGCTCGG
1 GGAGTTCA-TTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * * * **
12821165 GCATGTACTGGTACGACAATTTTCTTTGTTAGGGCACCAT-TGTCGGAGCATCACCAGAGAACCT
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCACTCGGAGCATCACCAGAGAACCT
* * * *
12821229 GACCGACGGCAATAGGGTTCCGACGATCGA-GGGGGCCGAGGGGCTGTGCGCACATGATGTGTGA
130 GACCGACGGCATTGGGGTTCCGACGATCGAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
* * *
12821293 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCAAACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * *
12821358 CCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGG
* *
12821423 GACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTC-ACGTTTTTAGCTGAAGTTTTTTGTG
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTG
* *
12821487 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCTAAAACTCCTTTCGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
12821551 TTTAAAAAATCTCGAACAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAGAACGAGTCATCTTGC
454 TTTAAAAAATCTCGAACA-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
12821616 CATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCAT-AAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
12821680 GGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
583 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
12821745 TCCCGTCTCTCTGGCTGGCGTA-TTGCCCG-CCCGCCCGCTCATTTCGTCAGTCGGCTTAGTCAT
648 TCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCAT
*
12821808 AT
713 AC
* * * * **
12821810 GGAGTTCAGTCCCAA-TCCAAGATCGGACAAGATTGAGGGTTGCGGCAGCACATGCTGGGCTCGG
1 GGAGTTCA-TTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * * *** *
12821874 GCATGTGCTGGTACCATAATTTTCTTTGTCGGGGCACC-TTTGTCGGAGCGTCACCAGAGAACCT
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCACTCGGAGCATCACCAGAGAACCT
*
12821938 GACCGACGGCACTGGGGTTCCGACGATCGA-GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGA
130 GACCGACGGCATTGGGGTTCCGACGATCGAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
* * *
12822001 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCAAACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
12822066 CCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAATGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAA-GG
* * *
12822130 GGATACTTTTTTCAAATGGTCACAAAATCTTATACACTTC-ACGTTTTTAGCTGAAGTTTTTTGT
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGT
* * * * *
12822194 GCATGCAAACAAAAATACAAGGATCA-ATCTA-CAAG-TTGGGACCAAAACTCCTTTCGGAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
12822256 TTTTAAAAAAAATCTCGAACAGCAAAAAG-TTC-AAAATCGT-AAAAATTAGAGAACGAGTCCAT
453 TTTT--AAAAAATCTCGAACA-CAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGT-CGT
*
12822318 CTTGCCATGAAACTT-ATGTGAAGGCTTAAGGGA-CATTGTATAGAA-TTACAACCGCCAT-AAA
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAA--GCCATAAAA
*
12822379 ATGGCATTGGCAAGCAG-AATATGAAGATGTGCCT-AACCCACCTACCACCCCTAATCGATCCAT
575 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCT-ATCGATCCA-
* * *
12822442 CGGCTTGAAGCAT-CCGTATCTCTGGCCGGCATAGT-GCCCGCCCCGCCTACGTGCCTGCTCGTT
637 CGGCTTG-CGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCCG----C---CC-GCTCGTT
* *
12822505 TCGTCGGTTGGCTTAGGCATAC
693 TTGTCAGTTGGCTTAGGCATAC
* * * * * *
12822527 GGAGTTCATTCCCAGTCTAAGATTG-ACCGGATCGAGCGTTGTGGCAGCA
1 GGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCA
12822576 GGATCAACAG
Statistics
Matches: 3693, Mismatches: 538, Indels: 603
0.76 0.11 0.12
Matches are distributed among these distances:
705 33 0.01
706 89 0.02
707 61 0.02
708 284 0.08
709 197 0.05
710 16 0.00
711 686 0.19
712 3 0.00
713 7 0.00
714 1 0.00
715 3 0.00
716 27 0.01
717 181 0.05
718 204 0.06
719 163 0.04
720 102 0.03
721 107 0.03
722 33 0.01
723 13 0.00
724 8 0.00
725 3 0.00
726 6 0.00
727 261 0.07
728 363 0.10
729 12 0.00
730 1 0.00
732 4 0.00
733 1 0.00
734 2 0.00
735 1 0.00
736 10 0.00
737 3 0.00
739 2 0.00
740 1 0.00
741 2 0.00
742 5 0.00
743 4 0.00
744 2 0.00
748 4 0.00
750 2 0.00
751 2 0.00
753 4 0.00
754 5 0.00
755 2 0.00
757 2 0.00
758 2 0.00
759 2 0.00
760 6 0.00
762 8 0.00
763 27 0.01
764 12 0.00
765 11 0.00
766 6 0.00
767 5 0.00
768 1 0.00
769 4 0.00
770 10 0.00
771 12 0.00
772 8 0.00
773 10 0.00
774 3 0.00
775 6 0.00
776 6 0.00
777 8 0.00
778 2 0.00
782 1 0.00
783 2 0.00
784 1 0.00
785 2 0.00
786 6 0.00
788 2 0.00
789 3 0.00
790 4 0.00
791 4 0.00
792 5 0.00
794 5 0.00
795 3 0.00
797 2 0.00
798 5 0.00
799 5 0.00
800 1 0.00
802 3 0.00
803 8 0.00
804 7 0.00
805 8 0.00
806 1 0.00
807 6 0.00
808 8 0.00
809 6 0.00
810 4 0.00
811 10 0.00
812 3 0.00
813 7 0.00
814 3 0.00
815 1 0.00
816 1 0.00
817 8 0.00
818 4 0.00
821 3 0.00
822 5 0.00
823 1 0.00
824 4 0.00
825 4 0.00
826 4 0.00
827 5 0.00
829 2 0.00
830 4 0.00
831 1 0.00
832 1 0.00
833 3 0.00
837 1 0.00
838 7 0.00
839 3 0.00
840 7 0.00
841 4 0.00
842 8 0.00
843 15 0.00
844 1 0.00
845 12 0.00
846 11 0.00
847 4 0.00
848 7 0.00
849 2 0.00
850 4 0.00
851 13 0.00
852 16 0.00
853 24 0.01
854 8 0.00
855 6 0.00
856 1 0.00
857 2 0.00
858 4 0.00
860 1 0.00
861 3 0.00
862 2 0.00
863 3 0.00
865 3 0.00
866 2 0.00
867 2 0.00
868 2 0.00
872 3 0.00
873 3 0.00
874 7 0.00
876 3 0.00
879 6 0.00
880 7 0.00
882 2 0.00
884 5 0.00
885 1 0.00
887 1 0.00
888 3 0.00
889 4 0.00
890 5 0.00
891 4 0.00
892 1 0.00
893 7 0.00
896 1 0.00
897 91 0.02
898 45 0.01
899 1 0.00
901 5 0.00
902 1 0.00
904 1 0.00
905 58 0.02
906 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (714 bp):
GGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCACTCGGAGCATCACCAGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTCGCCCGCCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATAC
Found at i:12822268 original size:708 final size:707
Alignment explanation
Indices: 12820374--12822484 Score: 3238
Period size: 708 Copynumber: 3.0 Consensus size: 707
12820364 TCCAGTCTAA
* * * * * * * * * *
12820374 GCATGTGGAGTTCATTCCCAGTCTAAGAACGAACCAGACCGAGGTTTGTGGCAGCACATGCTGGG
1 GCATATGGAGTTCAGTCCCAATCCAAGATCGGACAAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * * *** * **
12820439 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTACCACAATTTTCTTTGTCAGGGCACCATTGTCGGAGCATCACCAGAGA
* * * *
12820504 A-CTGACCGACGGCATTGGGGTTTCGACAATCGAGGGGGTCGGGTGGGGGGGTGTGCGCACATGA
131 ACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGG-C----CGGGGGGTGTGCGCACATGA
* **
12820568 TGTGCGATGGGTGCTGGTACTTCGCCCTTATATTTTCCCCCTATCGCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAAC
* *
12820633 TCAAACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTACTGCCGGTAGCCATTAAAGTGTCTG
256 TCAAACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
12820698 AAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGCGTTTTTAGCTGAAGTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCACGTTTTTAGCTGAAGTTT
*
12820763 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAACTCCTTTCGA
12820828 AAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCA
450 AAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTC-AAAATCGTGAAAAATAGAGAACGAGTCA
*
12820893 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAATG
514 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAATG
* *
12820958 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
579 GCATTGGCAAGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTT
* * * *
12821023 GCGCATCCCGTCTCTCTCGCTGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCATTTTGTCAGTT
644 GCGCATCCCGTCTCTCTGGCTGGCGTA-T---TGCCCG----CCCGCCCGCTCATTTCGTCAGTC
12821088 GGCTTAG
701 GGCTTAG
*
12821095 GCATATGGAGTTCAGTCCCAATCCAAGATCGGACAAGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATATGGAGTTCAGTCCCAATCCAAGATCGGACAAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * *
12821160 CTCGGGCATGTACTGGTACGACAATTTTCTTTGTTAGGGCACCATTGTCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTACCACAATTTTCTTTGTCAGGGCACCATTGTCGGAGCATCACCAGAGA
* *
12821225 ACCTGACCGACGGCAATAGGGTTCCGACGATCGAGGGGGCCGAGGGGCTGTGCGCACATGATGTG
131 ACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
12821290 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCAA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCAA
*
12821355 ACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12821420 GGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTCACGTTTTTAGCTGAAGTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCACGTTTTTAGCTGAAGTTTTTTG
* *
12821485 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCTAAAACTCCTTTCGAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCAAAACTCCTTTCGAAAAAA
12821550 TTTTAAAAAATCTCGAACAGCAAAAAGTTTCGAAAATCGTGAAAAATAGAGAACGAGTCATCTTG
455 TTTTAAAAAATCTCGAACAGCAAAAAGTTTC-AAAATCGTGAAAAATAGAGAACGAGTCATCTTG
12821615 CCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAATGGCATT
519 CCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAATGGCATT
*
12821680 GGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
584 GGCAAGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
12821745 TCCCGTCTCTCTGGCTGGCGTATTGCCCGCCCGCCCGCTCATTTCGTCAGTCGGCTTAG
649 TCCCGTCTCTCTGGCTGGCGTATTGCCCGCCCGCCCGCTCATTTCGTCAGTCGGCTTAG
* *
12821804 TCATATGGAGTTCAGTCCCAATCCAAGATCGGACAAGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCAGTCCCAATCCAAGATCGGACAAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12821869 CTCGGGCATGTGCTGGTACCATAATTTTCTTTGTCGGGGCACCTTTGTCGGAGCGTCACCAGAGA
66 CTCGGGCATGTGCTGGTACCACAATTTTCTTTGTCAGGGCACCATTGTCGGAGCATCACCAGAGA
*
12821934 ACCTGACCGACGGCACTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
12821999 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCAAA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCAAA
*
12822064 CCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12822129 GGGATACTTTTTTCAAATGGTCACAAAATCTTATACACTTCACGTTTTTAGCTGAAGTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCACGTTTTTAGCTGAAGTTTTTTGT
* *
12822194 GCATGCAAACAAAAATACAAGGATCA-ATCTA-CAAG-TTGGGACCAAAACTCCTTTCGGAAAAA
391 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG-CCAAAACTCCTTTCGAAAAAA
12822256 TTTTAAAAAAAATCTCGAACAGCAAAAAG-TTCAAAATCGT-AAAAATTAGAGAACGAGTCCATC
455 TTTT--AAAAAATCTCGAACAGCAAAAAGTTTCAAAATCGTGAAAAA-TAGAGAACGAGT-CATC
*
12822319 TTGCCATGAAAC-TTATGTGAAGGCTTAAGGGA-CATTGTATAGAA-TTACAACCGCCATAAAAT
516 TTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTA-AGAATTTACAA--GCCATAAAAT
*
12822381 GGCATTGGCAAGCAG-AATATGAAGATGTG-CCTAACCCACCTACCACCCCTAATCGATCCATCG
578 GGCATTGGCAAGCAGAAATATGAAGATGTGCCCAAACCCACCTACCA-CCCT-ATCGATCCA-CG
* * * * * *
12822444 GCTTGAAGCAT-CCGTATCTCTGGCCGGCATAGTGCCCGCCC
640 ACTTG-CGCATCCCGTCTCTCTGGCTGGCGTATTGCCCGCCC
12822485 CGCCTACGTG
Statistics
Matches: 1293, Mismatches: 83, Indels: 41
0.91 0.06 0.03
Matches are distributed among these distances:
705 38 0.03
706 88 0.07
707 56 0.04
708 291 0.23
709 192 0.15
713 5 0.00
716 1 0.00
717 235 0.18
718 246 0.19
721 108 0.08
722 33 0.03
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (707 bp):
GCATATGGAGTTCAGTCCCAATCCAAGATCGGACAAGACTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTACCACAATTTTCTTTGTCAGGGCACCATTGTCGGAGCATCACCAGAGA
ACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCAAA
CCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCACGTTTTTAGCTGAAGTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAATCGTGAAAAATAGAGAACGAGTCATCTTGCC
ATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAATGGCATTGG
CAAGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
CCGTCTCTCTGGCTGGCGTATTGCCCGCCCGCCCGCTCATTTCGTCAGTCGGCTTAG
Found at i:12822718 original size:26 final size:26
Alignment explanation
Indices: 12822682--12822731 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12822672 GACTTAGGCG
*
12822682 TACGGAGTTCATTCGCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
12822708 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12822732 ATTGGATCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12823931 original size:901 final size:873
Alignment explanation
Indices: 12821844--12827032 Score: 5175
Period size: 901 Copynumber: 5.8 Consensus size: 873
12821834 GGACAAGATT
* *
12821844 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT-ACCATAATTTTCTTTGTCGGGG
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCCAT--TTTTC--T-TC---A
* * * *
12821908 CACCTTTGTCGGAGCGTC-ACCAGAGAACCTGACCGACGGCACTGGGGTTCCGACGATCGAGGGG
58 CACC---G--GGAGCATCGACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGG
*
12821972 -GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
117 CCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
12822036 ATCGCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCT
182 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
12822101 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTATACA
247 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
12822166 CTTCACGTTTTTAGCTGAAGTTTTTTGTGCATGCAAACAAAAATACAAGGATCA-ATCTA-CAAG
312 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
* * ** * *
12822229 -TTGGGACCAAAACTCCTTTCGGAAAAATTTTAAAAAAAATCTCGAACAGCAAAAAG-TTC-AAA
377 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTT--AAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * *
12822291 ATCGT-AAAAATTAGAGAACGAGTCCATCTTGCCATGAAACTT-ATGTGAAGGCTTAAGGGA-CA
440 ATCATGAAAAA-TAGAAAACGAGT-CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
12822353 TTGTATAGAA-TTACAACCGCCATAAAATGGCATTGGCAAG-CAGAATATGAAGATGTGCCTAAC
503 TTGTA-AGAATTTACAA--GCCATAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAA
* * * *
12822416 CCACCTACCACCCCTAATCGATCCATCGGCTTGAAGCAT-CCGTATCTCTGGCCGGCATAGTGCC
565 CC-CCTACCA-CCCT-ATCGATCCA-CGGCTTG-CGCATCCCATCTCTCTGGCCGGCGTAGTGCC
* * *
12822480 CGCCCCGCC-TACGTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
625 CGCCGCGCCGCACGCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTC
* * * *
12822544 TAAGAT-TGACCGGATCGAGCGTTGTGGCAGCAGGATCAACAGCCCGCAGAGGGGGACCCGA-CT
688 TAAGATCGGACCAGACCGAGGGTTGT-G--GCA-G--C-ACA-----CAGA-GGGGACCCGATC-
* * * * *
12822607 GATCCACGGCTTGTGCATCCTGCCTCTCTGGCCGGCTGAGCTC-CCGCACGCTCGTTTCGTGGGT
739 GATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCT-AAC-CGCCGCACGCTTGTTTCGTGGGT
* *
12822671 TGACTTAGGCGTACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
801 TGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
12822736 GATCTGATC
865 GATCGGACC
* * *
12822745 GAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTCTCTTCTCCGGAGA
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCCA-TT-T-TTCTTC----A
* * **
12822810 GCCATCGTTGGAGCATC-ACAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGT
58 --CACCG--GGAGCATCGACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCC
* *
12822874 CGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
119 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
12822939 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTG
183 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
12823004 GCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTATTTCAAATGGTCACAAAATCTTGTACAT
248 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
**
12823069 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
313 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
* *
12823134 TTGGGGCCAAAACTCC-TCCAAAAAAATTTAAAAAAATCACGAACCGCAAAAAGTTTCAAAAATC
378 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * * *
12823198 GTGAAAAATAAAAAACGAGTCATCTTGGCATGAAACTTCATGTGAAGG-TTAAGGGACCATTGGT
443 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GT
* *
12823262 ACAG-ATTCTACAAG-CATACCAATGGCATTGGCACGTAAAAATAATGAAGATGTTGTCTTAAAC
507 A-AGAATT-TACAAGCCATA-AAATGGCATTGGCACGTAAAAAT-ATGAAGATG-TG-CCTAAAC
* * *
12823325 CGCTCTAACCACCAATGTCGATCCACGGCTTGGCGCATGCCCATCT-TGTCGGCCGGCG-AGGCT
566 C-C-CT-ACCACC-CTATCGATCCACGGCTT-GCGCAT-CCCATCTCTCT-GGCCGGCGTA-G-T
* * * ** *
12823388 CGCCCACCGCGCCGCACGCGCCGTTTGTTAAGTCGGTTGGCTTTAGCGCATATCG-GTTCATTCA
622 -GCCCGCCGCGCCGCACGCGCCGCTCGTTTCGTCGGTTGGC-TTAG-GCATA-CGAGTTCATTCC
* *
12823452 CAGTCT-AGATCGGACCAGACCGATGGGTTTGTGGCAGCACACA-ATGGGGACTCGATCGA-CCT
683 CAGTCTAAGATCGGACCAGACCGA-GGG-TTGTGGCAGCACACAGA-GGGGACCCGATCGATCCC
* *
12823514 CGGCTTGCGCATCC-ACCCTCT-GTCGGCTAAACCGCAACGCATAC-CTTGTTTCGTGGGTTGAC
745 CGGCTTGCGCATCCGCCCCTCTGGCCGGCT-AACCGC--CGC--ACGCTTGTTTCGTGGGTTGAC
* * * *
12823576 TTAGGCATATGGAGTTCAGTCCAGTCTAAGCATAC-GAGGTTCA-TCTCAGTATAAGATCGGATC
805 TTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGA-GTTCATTCCCAGTCTAAGATCGGATC
*
12823639 GGATC
869 GGACC
* * * *
12823644 GAGGGTTACGGCAGCACATTCTGGGCTCGAGCCATTGTGCTGGTGCCCATAATTTCCTTCACAAC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCG-GGCA-TGTGCTGGTGCCCAT--TTTTCTTCAC-AC
* * * *
12823709 CGGGCA-CATCGTCCGG-GAACCTGAAGTCGGACGGCATTGGGGTTCCGGCAAGTACGGGGGCCC
61 CGGG-AGCATCGACCGGAGAACCTG-A-CCGG-CGGCATTGGGGTTCCGACGA-T-CGGGGGCCC
* * *
12823772 CGGGGGGTGTGCGCACATTAATATGGCG-TGAGTGCCTGGTAC-TGGCCCTTCATATTGGCCCCC
120 CGGGGGGTGTGCGCACA-TGATGT-GCGATGGGTG-CTGGTACTTGGCCCTT-ATATTGGCCCCC
* * *
12823835 TTATCCCTCATCAAAACCCTTGAGAACTCACACGCCCCTT-AAGGGCA-TTGAAAATTTTACAGG
181 -TATCCCTCATC-AAA-CCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTG-AGATTTTACAGG
* * * * *
12823898 TTTGTTGGCAGTAGCCATTAAAGTGTTTGAAATGCGGACACTTATTTCAAATGGTCACAAAATCT
241 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** *
12823963 TGTACATTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
306 TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
* *
12824028 ACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAATTTTAAAAAATCCCGAACCGCGAAAAGTTTC
371 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* ** * *
12824092 AAAAATCGTGAAAAATA-AAAAGCGAGTCATCTCACCATGAAACTTAATGTGAAGGCTTAAGGGA
436 AAAAATCATGAAAAATAGAAAA-CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
12824156 CCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATATGCCTAA
500 CCATTGTAAGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAA
* * * * *
12824221 ACCCACCTACCATCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCTCG
564 A-CC-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCG
* * * **
12824286 CC-CGTCCGCCCGCCCGCCCGTTCGTTTAGTTAGTTGGCTTAGGCATATCGAGTTCATTCCCAGT
627 CCGCG-CCGCACG--CG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATA-CGAGTTCATTCCCAGT
* * *
12824350 TTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACACAGAGGGGCACCCGATCGATCCCCAGCTT
687 CTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACACAGAGGGG-ACCCGATCGATCCCCGGCTT
* ** * *
12824415 GCGCATCCCGCCCCTCTGGCCGGTTAAGAGCCCTCATGCTTGTTTCGTGGGTTGACTTAGGCATA
751 GCGCAT-CCGCCCCTCTGGCCGGCTAACCG-CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
12824480 CGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC----A----A----ACC
814 CGGAGTTCATT-CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
* ** * * *
12824515 GAGGGTTACGATAGCACATGCTTGGCTCGGGCATGTGCTGGTGCTGCATTTTTTTTCATCGGGGT
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-CCATTTTTCTTCA-C-----
* * * * * *
12824580 ACCATCGTCGGAGCATCG-TCTGAGAACCTGACAGACGGCATTGGGGTTCCAACGAACGGGGCGA
59 A-C--CG--GGAGCATCGACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-G-
** * *
12824644 CCGGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCT
117 CCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
12824709 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
182 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12824774 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACA
247 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
12824839 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATGTACCAAG
312 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
* * *
12824904 TTTGAGGCCAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAAT
377 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * *
12824969 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCGTTGT
442 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
12825034 ATGAATTTACAAGCCCTAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCAAAACCCGCC
507 AAGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAA-CC-CC
* * * * * * *
12825099 TACCACCTTATCGATCCACAGCTTGCGTAACCCCTCTCTCTGGCTGGCGTAGTGCCCGCC-AG-C
569 TACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCGCGCC
* * *
12825162 -CA-G-GCCGCTCGTTTCGTCGATTGGCCTAGGCATACG-G---AGTTCCCAGTCTAACATCGGA
634 GCACGCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAGTTCA-TTCCCAGTCTAAGATCGGA
* * * * *
12825220 CC-GAACTGAGGGTTGCGGCACCAGGATCGGTAGCACGCAGAAGGGAACCCGATCGATCCCTGGT
698 CCAG-ACCGAGGGTTGTGG---CA-G--C---A-CA--CAG-AGGGGACCCGATCGATCCCCGGC
* * * * * * *
12825284 TTGCGCATCCCGCCACTCTGGCCGGCTGAGCGCCTGCACGGTCGTTTCATGGGTTGAATTAGGCA
749 TTGCGCAT-CCGCCCCTCTGGCCGGCTAACCGCC-GCACGCTTGTTTCGTGGGTTGACTTAGGCA
* * * * *
12825349 TACGGAGTTCACTGCGAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
812 TACGGAGTTCA-TTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
* ** **
12825412 GAGGGTTGCGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTT--CGTCGGG
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-CATTTTTCTTCACACCGGG
* ** **
12825475 -GCATC-ACCGGAGAACCTGACCGGCGGTATTGGGGTTCCGGTGATCGGAAGGG-CTGGGGGGGT
65 AGCATCGACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG--GGGCCCCGGGGGGT
* * * *
12825537 GTGCGCAAATGATGTGCGATGGGTGATGGTATTTGGCCCTTATATTGGCCCCCTATCCATCATCA
128 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * * *
12825602 AACCTCGAGAACTCACACCCACTTAAAAAGCATTTGAGAATTTACAGGTTTGTTACCAGTAGCCT
193 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* ** * *
12825667 TTAAAGTGTCTGAAATGGGGACATTTTTTTGTAATGGTCACAGAATCTTGTACACTTCGAGTTTT
258 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
* *
12825732 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
323 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
* * * * ** * *
12825797 CACTCCTTCCAAAAAAATTGTAAAAAATCTCAAACCATAAAAAGTTTAAAAAATCATGAAAAATG
388 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * * * *
12825862 GAAAACG-GGCAGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTGAC
453 GAAAACGAGTCA-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTAC
*
12825926 AAGCCATAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
517 AAGCCATAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAA-CC-CCTACCACCCTAT
* * * * * * *
12825991 AGATCCACGGCTTGCGAAACCCGTCTCTCTGGCCGGTGTAGTGCCCGCC-CG-C-C-CGC-TCAC
580 CGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCGCACGCGCCGC
* * * *
12826051 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAAATTGGAGCAGACCGAGG
645 TCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* *
12826116 GTTGTGGTAGCAGGATTGGTAGCACACAGAGGGAGACCCGACCGATCCCCAGCTTGCGCATCACG
709 GTTGT-G--GC---------AGCACACAGAGGG-GACCCGATCGATCCCCGGCTTGCGCATC-CG
* * **
12826181 CCCCTCTGGCCGACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
760 CCCCTCTGGCCGGCTAACCG-CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
12826246 TCCTTGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATAGGACC
824 TCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
*
12826297 AAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-CATTTTTC-TT-------C
* * * * * **
12826362 ACCATCGCCGGAGCATCG-CCAGAGAACTTGACCGGCGGCATTAGCGTTCCGACGATCGGGGGGG
57 A-CA-C-CGGGAGCATCGACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCC
*
12826426 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
119 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
12826491 CCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGC
184 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
12826556 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAACATCTTGTACACT
249 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
12826621 TCAAGTTTGTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAATT
314 TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* ** * ** *
12826686 TTGGGCCAAAACTCCTTCTGAAAATATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCA
379 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * * *
12826751 TGAAAAATAGAAAACAAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTAT
444 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAA
* * * *
12826816 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTA
509 GAATTTACAAGCCAT-AAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAA-CC-CCTA
* * * * *
12826881 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTG-CGCGTCCG
571 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCGCG-CCG
* * * * *
12826945 CCCGC-CCGCTCGTTTCGTCGGTTGGCTTAGACATGCGGAGTTCATTCCCAATCTAAGATCAGAC
635 CACGCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGAC
* *
12827009 CGGACCGAGGGTTGCGGCAGCACA
699 CAGACCGAGGGTTGTGGCAGCACA
12827033 TGCTGGCCTT
Statistics
Matches: 3633, Mismatches: 445, Indels: 430
0.81 0.10 0.10
Matches are distributed among these distances:
858 2 0.00
859 30 0.01
861 1 0.00
862 4 0.00
863 25 0.01
864 1 0.00
865 1 0.00
867 1 0.00
868 9 0.00
869 21 0.01
870 177 0.05
871 327 0.09
872 22 0.01
873 28 0.01
874 20 0.01
875 36 0.01
876 3 0.00
877 4 0.00
878 14 0.00
879 1 0.00
881 129 0.04
882 364 0.10
883 39 0.01
884 12 0.00
885 202 0.06
886 9 0.00
887 2 0.00
888 2 0.00
889 1 0.00
891 9 0.00
892 25 0.01
893 36 0.01
894 57 0.02
895 111 0.03
896 46 0.01
897 94 0.03
898 404 0.11
899 212 0.06
900 61 0.02
901 446 0.12
902 289 0.08
903 107 0.03
904 68 0.02
905 30 0.01
906 14 0.00
907 2 0.00
908 20 0.01
909 17 0.00
910 17 0.00
911 2 0.00
912 32 0.01
913 33 0.01
914 9 0.00
915 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (873 bp):
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCCATTTTTCTTCACACCGGGA
GCATCGACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGC
CATAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCGCACGCGCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
CAGCACACAGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTAACCGC
CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGATCGGACC
Found at i:12825290 original size:871 final size:856
Alignment explanation
Indices: 12822705--12827032 Score: 4134
Period size: 898 Copynumber: 4.9 Consensus size: 856
12822695 CGCAGTCTAA
* ** * *
12822705 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCTGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12822770 CTCGGGCATGTGCTGGTGTCGCATTTCTCTTCTCCGGAGAGCCATCGTTGGAGCATC-ACAGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCT-CGGGGA-CCATCGTCGGAGCATCGTC--GAG
* *
12822834 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGAGGGGGTGTGCGCACATGATGT
127 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGCCGGGGGGGGTGTGCGCACATGATGT
* *
12822899 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12822964 CACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
12823029 TGCGGACACTTATTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12823094 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * * *
12823158 AATTTAAAAAAATCACGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCT
451 AATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * **
12823223 TGGCATGAAACTTCATGTGAAGG-TTAAGGGACCATTGGTA-CAGATTCTACAAG-CATACCAAT
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGA-ATT-TACAAGCCATAAAAAT
* * * * *
12823285 GGCATTGGCACGTAAAAATAATGAAGATGTTGTCTTAAACCGC-TCTAACCACCAATGTCGATCC
578 GGCATTGGCACGTAGAAAT-ATGAAGATG-TG-CCTAAACC-CACCT-ACCACC-CTATCGATCC
* * * * *
12823349 ACGGCTTGGCGCATGCCCATCT-TGTCGGCCGGCG-AGGCTCGCCCACCGCGCCGCACGCGCCGT
637 ACGGCTT-GCGCA-ACCCGTCTCTCT-GGCCGGCGTA-G-T-GCCCGCC-CG-C-CA-G-GCCGC
* ** *
12823412 TTGTTAAGTCGGTTGGCTTTAGCGCATATCGGTTCA-TTCACAGTCT-AGATCGGACCAGACCGA
691 TCGTTTCGTCGGTTGGC-TTAG-GCATA-CGG---AGTTCCCAGTCTAAGATCGGACCAGACCGA
* * * * * *
12823475 TGGGTTTGTGGCAGCACACA-ATGGGGACTCGATCGA-CCTCGGCTTGCGCAT-CC-ACCCTCT-
750 -GGG-TTGTGGCAGCACACAGAAGGGAACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTG
* * *
12823535 GTCGGCTAA-ACCGCAACGCATACCTTGTTTCGTGGGTTGACTTAG
813 GCCGGCTAAGA--GCACCGCATAGCTTGTTTCGTGGGTTGACTTAG
* *
12823580 GCATATGGAGTTCAGT-CCAGTCTAAGCATACGAGGTTCATCTCAGTATAAGATCGGATCGGATC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--GG---A--TC------A-A----A-C----C
* * * ** *
12823644 GAGGGTTACGGCAGCACATTCTGGGCTCGAGCCATTGTGCTGGTGCC-CA-TAATTTCCTTC---
41 GAGGGTTGCGGCAGCACATGCTGGGCTCG-GGCA-TGTGCTGGTGCCGCATTTTTTTTC-TCGGG
* * * * * *
12823704 -ACAACCG--GGCA-CATCGTCCGGGAACCTGAAGTCGGACGGCATTGGGGTTCCGGCAAGTACG
103 GACCATCGTCGG-AGCATCGT-CGAGAACCTG-A-CCGG-CGGCATTGGGGTTCCGACGA-T-CG
** * * *
12823765 GGGGCCCCGGGGGGTGTGCGCACATTAATATGGCG-TGAGTGCCTGGTAC-TGGCCCTTCATATT
161 GGGGCCGGGGGGGGTGTGCGCACA-TGATGT-GCGATGGGTG-CTGGTACTTGGCCCTT-ATATT
* * *
12823828 GGCCCCCTTATCCCTCATCAAAACCCTTGAGAACTCACACGCCCCTT-AAGGGCA-TTGAAAATT
222 GGCCCCC-TATCCCTCATC-AAA-CCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTG-AGATT
* * * * *
12823891 TTACAGGTTTGTTGGCAGTAGCCATTAAAGTGTTTGAAATGCGGACACTTATTTCAAATGGTCAC
282 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
12823956 AAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
347 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
12824021 CACGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAATTTTAAAAAATCCCGAACCGCGAA
412 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCTCAAA
* * ** * *
12824085 AAGTTTCAAAAATCGTGAAAAATA-AAAAGCGAGTCATCTCACCATGAAACTTAATGTGAAGGCT
477 AAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
12824149 TAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATA
541 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
* * * *
12824214 TGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTA
606 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGGCGTA
* * **
12824279 GTGCTCGCCCGTCC-GCCCGCCCGCCCGTTCGTTTAGTTAGTTGGCTTAGGCATATC-GAGTTCA
671 GTGCCCGCCCG-CCAG---G-CCG--C--TCGTTTCGTCGGTTGGCTTAGGCATA-CGGAG----
* * * *
12824342 TTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACACAGAGGGGCACCCGATCGATC
722 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACACAGAAGGGAACCCGATCGATC
* *
12824407 CCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTAAGAGC-CCTCAT-GCTTGTTTCGTGGGTTGA
787 CCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGAGCACCGCATAGCTTGTTTCGTGGGTTGA
12824470 CTTAG
852 CTTAG
* ** *
12824475 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTACGATAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGG
*
12824540 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTCATCGGGGTACCATCGTCGGAGCATCGTCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-TCGGGG-ACCATCGTCGGAGCATCGTC-GAGA
* * * * *
12824605 ACCTGACAGACGGCATTGGGGTTCCAACGAACGGGGCGACCGGGGGGGGTGTGTGCACATGATGT
128 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-G-CCGGGGGGGGTGTGCGCACATGATGT
* *
12824670 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12824735 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12824800 TGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
12824865 ATGCATGCCAAAAAAAATACAAGGATCACATGTACCAAGTTTGAGGCCAAAACGCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
12824930 AATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
12824995 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCGTTGTATGAATTTACAAGCCCTAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
12825060 ATTGGCACATAAAAATATGAAGATGTGCCAAAACCCGCCTACCACCTTATCGATCCACAGCTTGC
581 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
12825125 GTAACCCCTCTCTCTGGCTGGCGTAGTGCCCGCCAGCCAGGCCGCTCGTTTCGTCGATTGGCCTA
646 GCAACCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGGCCGCTCGTTTCGTCGGTTGGCTTA
* * *
12825190 GGCATACGGAGTTCCCAGTCTAACATCGGACC-GAACTGAGGGTTGCGGCACCAGGATCGGTAGC
711 GGCATACGGAGTTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGTGG---CA-G--C---A-C
** * * * *
12825254 ACGCAGAAGGGAACCCGATCGATCCCTGGTTTGCGCATCCCGCCACTCTGGCCGGCTGAGCGCCT
765 A--CAGAAGGGAACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCT-A-AG--A
* * * * * *
12825319 GCACGGTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCACTGCGAGTCTAA
824 GCAC---CG---CATAGCTTG--TT--TCGT--GG-G-T---T--GACT-TAG
* * * *
12825372 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
12825437 CTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG--CA---TC--A-C--CG--GAGAAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-TCGGGGACCATCGTCGGAGCATCGTCGAGAAC
* ** * *
12825490 CTGACCGGCGGTATTGGGGTTCCGGTGATCGGAAGGG-CTGGGGGGGTGTGCGCAAATGATGTGC
130 CTGACCGGCGGCATTGGGGTTCCGACGATCGG--GGGCCGGGGGGGGTGTGCGCACATGATGTGC
* * *
12825554 GATGGGTGATGGTATTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * *
12825619 CCCACTTAAAAAGCATTTGAGAATTTACAGGTTTGTTACCAGTAGCCTTTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* ** *
12825684 GGGACATTTTTTTGTAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12825749 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAACACTCCTTCCAAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * * * *
12825814 TTGTAAAAAATCTCAAACCAT-AAAAAGTTTAAAAAATCATGAAAAATGGAAAACG-GGCAGTCT
453 TTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-GTCT
* * *
12825877 TGCGATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTGACAAGCCAT-AAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12825941 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGC
581 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12826006 GAAACCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCC-CGCTCACTCGTTTCGTCGGTTGGCTT
646 GCAACCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGGC-CGCTCGTTTCGTCGGTTGGCTT
* * * *
12826070 AGGCATACGGAGTTCATTCCCGGTCTAAAATTGGAGCAGACCGAGGGTTGTGGTAGCAGGATTGG
710 AGGCATACGGAG----TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGT-G--GC--------
* * * *
12826135 TAGCACACAG-AGGGAGACCCGACCGATCCCCAGCTTGCGCATCACGCCCCTCTGGCCGACTGAG
760 -AGCACACAGAAGGGA-ACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
* *
12826199 TGC-CCGCA-CGCTTGTTTCGTGGGTTGACTTAG
823 AGCACCGCATAGCTTGTTTCGTGGGTTGACTTAG
**
12826231 GCATACGGAGTTCATTCCTTGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATAGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G----------G------ATC--A-A--AC
*
12826296 CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGC-CGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-TTT-CTCGGG
* * * * *
12826360 GCACCATCGCCGGAGCATCGCCAGAGAACTTGACCGGCGGCATTAGCGTTCCGACGATCGGGGG-
103 G-ACCATCGTCGGAGCATCGTC-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGC
*
12826424 -GGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
166 CGG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
12826488 TATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGC
229 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12826553 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAACATCTTGTAC
294 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
12826618 ACTTCAAGTTTGTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
359 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * ** * **
12826683 ATTTTGGGCCAAAACTCCTTCTGAAAATATTTTAAAAAATCCTAAACCGT-AAAAAGTTTCAAAA
424 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAA
* * *
12826747 ATCATGAAAAATAGAAAACAAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATC
488 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
12826812 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCA
553 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
* * * *
12826877 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCGCGT
618 CCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGGCGTAGTGCC--CGC--
* * * * * *
12826942 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGACATGCGGAGTTCATTCCCAATCTAAGATCAG
679 CCGCCAGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG----TTCCCAGTCTAAGATCGG
* *
12827007 ACCGGACCGAGGGTTGCGGCAGCACA
740 ACCAGACCGAGGGTTGTGGCAGCACA
12827033 TGCTGGCCTT
Statistics
Matches: 2885, Mismatches: 362, Indels: 396
0.79 0.10 0.11
Matches are distributed among these distances:
858 1 0.00
859 56 0.02
860 5 0.00
861 1 0.00
862 4 0.00
863 25 0.01
864 1 0.00
865 3 0.00
866 1 0.00
867 5 0.00
868 2 0.00
869 21 0.01
870 176 0.06
871 293 0.10
872 16 0.01
873 31 0.01
874 31 0.01
875 53 0.02
876 8 0.00
877 5 0.00
878 18 0.01
879 1 0.00
880 6 0.00
881 137 0.05
882 368 0.13
883 39 0.01
884 6 0.00
885 129 0.04
886 6 0.00
887 7 0.00
888 6 0.00
889 5 0.00
890 4 0.00
891 17 0.01
892 22 0.01
893 27 0.01
894 57 0.02
895 106 0.04
896 59 0.02
897 129 0.04
898 395 0.14
899 173 0.06
900 32 0.01
901 309 0.11
902 21 0.01
903 67 0.02
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (856 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCTCGGGGACCATCGTCGGAGCATCGTCGAGAACC
TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAAC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACACAGAAGGGAACCCGA
TCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGAGCACCGCATAGCTTGTTTCGTG
GGTTGACTTAG
Found at i:12825394 original size:26 final size:26
Alignment explanation
Indices: 12825346--12825398 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12825336 GTTGAATTAG
* * *
12825346 GCATACGGAGTTCACTGCGAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
12825372 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
12825398 G
1 G
12825399 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:12826280 original size:26 final size:26
Alignment explanation
Indices: 12826231--12826282 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12826221 GTTGACTTAG
**
12826231 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12826257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12826283 TATCAGATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12826644 original size:898 final size:890
Alignment explanation
Indices: 12824475--12827027 Score: 3409
Period size: 882 Copynumber: 2.9 Consensus size: 890
12824465 GTTGACTTAG
* * * *
12824475 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTACGATAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-AGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
12824540 CTCGGGCATGTGCTGGTGCTGCATTTTT-TTTCATCGGGGTACCATCGTCGGAGCATCGTCTGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTC--CGGGG-ACCATCG-CGGAGCATCGCCAGAG
* * * * * * *
12824604 AACCTGACAGACGGCATTGGGGTTCCAACGAACGGGGCGACCGGGGGGGGTGTGTGCACATGATG
126 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
* *
12824669 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12824734 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12824799 ATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
319 ATGGGGACACTTTTTTTGAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
12824864 TATGCATGCCAAAAAAAATACAAGGATCACATGTACCAAGTTTGAGGCCAAAACGCCTTCCAAAA
383 TGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
*
12824929 AAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
448 AAATTTTAAAAAAT-CCAAACCT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-GTCGTC
* * *
12824994 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCGTTGTATGAATTTACAAGCCCTAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
12825059 CATTGGCACATAAAAATATGAAGATGTGCCAAAACCCGCCTACCACCTTATCGATCCACAGCTTG
575 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12825124 CGTAACCCCTCTCTCTGGCTGGCGTAGTGCCCGCCAGCCAGGCCGCTCGTTTCGTCGATTGGCCT
640 CGAAACCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCC-CGCCGCTCGTTTCGTCGGTTGGCTT
* * *
12825189 AGGCATACGGAG----TTCCCAGTCTAACATCGGACCGAACTGAGGGTTGCGGCACCAGGATCGG
704 AGGCATACGGAGTTCATTCCCAGTCTAAAATCGGACAGAACCGAGGGTTGCGGCACCAGGATCGG
* * ** * * *
12825250 TAGCACGCAGAAGGGAACCCGATCGATCCCTGGTTTGCGCATCCCGCCACTCTGGCCGGCTGAGC
769 TAGCACACAGAAGGGAACCCGACCGATCCCCAGCTTGCGCATCACGCCACTCTGGCCGACTGAGC
* * *
12825315 GCCTGCACGGTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCACTGCGAGTCTAA
834 GCCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCACTCCGAGTCTAA
* *
12825372 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGACCGAGGGTTGCGACAGCACATGCTGGG
** * * *
12825437 CTCAAGCATGTGCTGGTGCCACATTTTTC-TT-C---G----TCG-GG-GCATCACCGGAGAACC
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCCGGGGACCATCGCGGAGCATCGCCAGAGAACC
* ** ** * *
12825491 TGACCGGCGGTATTGGGGTTCCGGTGATCGGAAGGGCTGGGGGGGTGTGCGCAAATGATGTGCGA
130 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGA
* * *
12825556 TGGGTGATGGTATTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * * *
12825621 CACTTAAAAAGCATTTGAGAATTTACAGGTTTGTTACCAGTAGCCTTTAAAGTGTCTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
12825686 GACA-TTTTTTTGTAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
324 GACACTTTTTTTG-AATGGTCACA-AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
12825750 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAACACTCCTTCCAAAAAAAT
387 CATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * * *
12825815 TGTAAAAAATCTCAAACCATAAAAAGTTTAAAAAATCATGAAAAATGGAAAACGGGCAGTCTTGC
452 TTTAAAAAATC-CAAACC-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGTC-GTCTTGC
* * *
12825880 GATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTGACAAGCCAT-AAAATGGCATT
514 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
12825944 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGAA
579 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAA
* * *
12826009 ACCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCACTCGTTTCGTCGGTTGGCTTAGGC
644 ACCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
12826074 ATACGGAGTTCATTCCCGGTCTAAAATTGGAGCAG-ACCGAGGGTTGTGGTAGCAGGATTGGTAG
708 ATACGGAGTTCATTCCCAGTCTAAAATCGGA-CAGAACCGAGGGTTGCGGCACCAGGATCGGTAG
* *
12826138 CACACAG-AGGGAGACCCGACCGATCCCCAGCTTGCGCATCACGCCCCTCTGGCCGACTGAGTGC
772 CACACAGAAGGGA-ACCCGACCGATCCCCAGCTTGCGCATCACGCCACTCTGGCCGACTGAGCGC
* * * * **
12826202 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAA
836 CCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCACTCCGAGTCTAA
* * * *
12826257 GCATACGGAGTTCATTCCCAGTCTAATATCAGATAGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATA-GACCGAGGGTTGCGACAGCACATGCTGGG
12826322 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGCCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTT-CCGGGG-ACCATCG-CGGAGCATCGCCAGAGA
* * * *
12826387 ACTTGACCGGCGGCATTAGCGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
127 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
12826452 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12826517 CCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12826582 GGGACACTTTTTTCGAATGGTCACAACATCTTGTACACTTCAAGTTTGTAGCTGATTTTTTTTGT
322 GGGACACTTTTTTTGAATGGTCACAA-ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** *
12826647 GCATGCCAACAAAAATACAAGGATCACATCTACCAAATTTTGGGCCAAAACTCCTTCTGAAAATA
386 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
12826712 TTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCATG
451 TTTTAAAAAATCC-AAACC-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-GGTCGTCTTG
*
12826777 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
12826842 TGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
578 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGA
* *
12826907 ATCCCGTCTCTCTGGCTGACGTAGTGCCTGCGCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
643 AACCCGTCTCTCTGGCTGGCGTAGTGCC--CGC--CCGCCCG-CCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
12826972 TAGACATGCGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCA
703 TAGGCATACGGAGTTCATTCCCAGTCTAAAATCGGACAGAACCGAGGGTTGCGGCA
12827028 GCACATGCTG
Statistics
Matches: 1438, Mismatches: 177, Indels: 76
0.85 0.10 0.04
Matches are distributed among these distances:
880 2 0.00
881 141 0.10
882 354 0.25
883 40 0.03
884 8 0.01
885 218 0.15
886 7 0.00
888 1 0.00
891 2 0.00
894 1 0.00
896 3 0.00
897 86 0.06
898 354 0.25
899 145 0.10
901 3 0.00
902 2 0.00
903 70 0.05
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGACCGAGGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTTCCGGGGACCATCGCGGAGCATCGCCAGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTTGAATGGTCACAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
AAAAATCCAAACCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAAACCCGTC
TCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAAATCGGACAGAACCGAGGGTTGCGGCACCAGGATCGGTAGCACACAGAA
GGGAACCCGACCGATCCCCAGCTTGCGCATCACGCCACTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCATGGGTTGAATTAGGCATACGGAGTTCACTCCGAGTCTAA
Found at i:12827647 original size:717 final size:710
Alignment explanation
Indices: 12826257--12828436 Score: 2991
Period size: 717 Copynumber: 3.1 Consensus size: 710
12826247 CCTTGTCTAA
* * * *
12826257 GCATACGGAGTTCATTCCCAGTCTAATATCAGA-TAGGACCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCACATGCTGG
*
12826321 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCG--GGAGCATCG--GGAG
* * *
12826386 AACTTGACCGGCGGCATTAGCGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTG
126 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTG--CACATGATGTG
* *
12826451 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
12826516 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12826581 GGGGACACTTTTTTCGAATGGTCACAACATCTTGTACACTTCAAGTTTGTAGCTGATTTTTTTTG
318 GGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTG
* * * * ** *
12826646 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAATTTTGGGCCAAAACTCCTTCTGAAAAT
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* * *
12826711 ATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCAT
447 ATTTTAAAAAATCCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12826776 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12826841 TTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
577 TTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
12826906 CATCCCGTCTCTCTGGCTGACGTAGTGCCTGCGCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
642 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
12826971 TTAG
707 TTAG
* * * * * *
12826975 ACATGCGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12827040 CTTGGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGTTGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCG--GGAGCATCG--GGAGA
*
12827105 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCACGTATGATGTG
127 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGTGTGCAC--ATGATGTG
* * *
12827170 CGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAGTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
12827235 ACCCCCTTAAAGAGCATTTAAGACTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12827300 GGGGACACTTTTTTTGAATGGTCACAAAATCTGGTACACTTCGAGTTTTTACCTGATTCTTTTGT
318 GGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGT
* * * * *
12827365 GCATG-AAAAAAAAATAAAAAGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
383 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
** *
12827429 TTTTAAAAAATCCGAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTG
448 TTTTAAAAAATCCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
12827494 CCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATTAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** **
12827559 TGGCACACTA-AAATATGAAGATATGCCTAAACCCACCTACCACTATATCGATCCACGGCTTGCG
578 TGGCATGC-AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12827623 CATCCCATCTCTTTGGCCGACGTAGTCCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGAC
642 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
12827688 TTAG
707 TTAG
* * ** * *
12827692 GCATATGAAGTCCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTTTC-GCAGCACATACTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-TTGCGGCAGCACATGCTGG
* * * ** *
12827756 GATCAGGCATGTGCTGGTGCCGTATTTTTCTTCACTGGGGCACCATC----GC--C-GGAGAACC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGGGAGCATCGGGAGAACC
* * * * * * *
12827814 CGACCGGTGGCACTGGGGTTCCGACAATC---GGG--GGGGTGAGTGCACATGATGTGTGATGGG
130 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCACATGATGTGCGATGGG
* *
12827874 TGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACATCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * *
12827939 TAAAGAGCGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
12828004 -TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
325 CTTTTTTT-GAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATG
* * * * *
12828068 CCAACAAGAATACAAGGATCACGTCTA-CAAGTTTGGGACCAAAAATCCATCGGAAAAAATTTTT
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC-CAAAAAAATTTT
* ** *
12828132 ACAAATAT-CG-AACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCA
452 A-AAAAATCCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
12828195 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
12828260 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATC
581 CATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
**
12828325 CCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCCCGCATGCTCGTTTCGTCGGTTGGCTTA
646 CCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
12828389 G
710 G
* * *
12828390 GTATACAAAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
12828437 TGGTAGCAGG
Statistics
Matches: 1293, Mismatches: 155, Indels: 50
0.86 0.10 0.03
Matches are distributed among these distances:
696 9 0.01
697 197 0.15
698 269 0.21
699 43 0.03
700 6 0.00
702 3 0.00
706 32 0.02
709 1 0.00
711 2 0.00
717 375 0.29
718 167 0.13
719 189 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGGGAGCATCGGGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAA
AATCCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:12829473 original size:26 final size:26
Alignment explanation
Indices: 12829436--12829488 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12829426 GTTGACTTAG
12829436 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12829462 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12829488 G
1 G
12829489 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12829948 original size:897 final size:884
Alignment explanation
Indices: 12827692--12830465 Score: 3638
Period size: 897 Copynumber: 3.1 Consensus size: 884
12827682 GTTGACTTAG
* * * * * * **
12827692 GCATATGAAGTCCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTTTCG-CAGCACATACTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG-TTGCGACAGCACATGTTGG
* * * * * * * * * **
12827756 GATCAGGCATGTGCTGGTGCCGTATTTTTCTTCACTGGGGCACCATCGCCGGAGAACCCGACCGG
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATTGTCGGAGAACCTGACCAA
* * * * * * *
12827821 TGGCACTGGGGTTCCGACAATC----GGG--GGGGTGAGTG--CACATGATGTGTGATGGGTGCT
130 CGGCATTAGGGTTCAGACGATCGAGGGGGCCGGGGGGTGTGCCCACATGATGTGTGATGGGTGCT
* *
12827878 GGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACATCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT-AA
* * * * * *
12827943 GAGCGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCATTTT
259 TAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
12828008 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
12828073 AAGAATACAAGGATCACGTCTA-CAAGTTTGGGACCAAAAATCCATCGGAAAAAATTTTTACAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTA-AAA
* * * *
12828137 TAT-CGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAAAC
452 AATCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
*
12828201 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
12828266 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCT
* *
12828331 CTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCATGCTCGTTTCGTCGGTTGGCTTAGGTATAC
647 CTCTGGCCAGCGTAATGCCCGCCCG-CCG-CC-C--GCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * * *
12828396 AAAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAGG-TTCAGCACCACG
707 GGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATT-AGCAGCACG
* * ***
12828459 CAGAGGGGGCCCCGACCGATCCCCGGCTTGCGCATCTCGTGCCTCTGGCCGGCTGAGCGCCCGCA
771 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGG-CGGCTGAGCGCCCGCA
* * * *
12828524 CGCTCGTTTCGTGTGTTGACTTAGGCATATAGTGTCCATTCCCAGTCTAA
835 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
12828574 GCATGC-AGAGTTCATTCCCAGTCTAAGATCGGA-CTAGACCGAGGGTTGCGACAGCACATGTTG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGACAGCACATGTTG
* *
12828637 GGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATTGTCGGAGAACCTGACCG
64 GGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATTGTCGGAGAACCTGACCA
** * * * *
12828702 GTGGCATTAGGGTTCCGACGATCGAGGGGTCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
129 ACGGCATTAGGGTTCAGACGATCGAGGGGGCCGGGGGGTGTGCCCACATGATGTGTGATGGGTGC
*
12828767 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* *
12828832 TGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTT
259 T-AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
12828897 TTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATACCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * *
12828962 AAAAAATACAAGGATTACATCTACCATGTTTCGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * **
12829027 ATTCCAAACCGCAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCCCCTTGCCATGAAAC
453 A-TCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
12829092 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
12829157 GGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCT
* * * * * *
12829222 CTCTGGTCGGCGTATTGCCCGCCCGCCTGCCCGCTCGTTTCGTTGATTGGCTTAGCCATACGGAG
647 CTCTGGCCAGCGTAATGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* *
12829287 TTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGTGGCAGCAGGATTAGCAGCACACAGAG
711 TTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATTAGCAGCACGCAGAG
* * *
12829352 GGGGACCCGGCCGATCCCCGGCTTGCGCGTCCCACCCCTCTGGCTGACTGAGCGCCCGCACGCTC
776 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC-GGCTGAGCGCCCGCACGCTC
12829417 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
12829462 GCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGACCGA-GGTTGCGACAGCACAAGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGTTGGG
*
12829526 CTCGGGCATGTGCTGGTGCTGCACTTTTCTTCGCCGGGGCACCATCGTCGGATCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCAT--T--G----TCG--G-AGA
* * * * *
12829591 ATCTGATCAACGGCATT-GGTGTTCAGGCGATCGGGGGGGCCGGGGGGTGTGCCCATATGATGTG
120 ACCTGACCAACGGCATTAGG-GTTCAGACGATCGAGGGGGCCGGGGGGTGTGCCCACATGATGTG
* * * *
12829655 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCTC
184 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
12829719 ACCCCCTTATATAACATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
249 ACCCCCTTA-ATAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12829784 GGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
12829849 AGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
12829914 ATTTTAAAACATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTT
443 ATTTTAAAAAATCC-GAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
* * *
12829979 GCCATGAAACTTCATGTGAAGGGTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCA
507 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** * *
12830044 TTGGCACACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATTTACGGCTTGCG
572 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCA
* * ** *
12830109 CATCCCGTCTCTCTGGCCAGCGTAATGCCCG---TCCGCCCGTTAATTTCGTCGGTTAGCTTAGG
637 CATCCCGTCTCTCTGGCCAGCGTAATGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** **
12830171 CAGACGGAGTTCATTCCCAGTCTAAG-TCT-GAATAGGACCGAGGGTTGTCACAGCAGGATT-GA
702 CATACGGAGTTCATTCCCAGTCTAAGAT-TAGACCA-GACCGAGGGTTGTGGCAGCAGGATTAG-
* * * ** *
12830233 CAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTCACGCATCCTACCCCTCTGGGCGGCTGAGC
764 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCT-GGCGGCTGAGC
* * *
12830298 GCCCGCACGCTCGTTTCATGGGTTGACTTGGGCATAC-GATGTTCATTTCCAGTCTAA
828 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA-GTTCATTCCCAGTCTAA
* * * *
12830355 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGAG-CAGCACATGTTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGTTGGG
* * * * *
12830419 CTCAGGCATGTGCTGGTGTTGTATTTTTCTTCGTCAGGGCACCATTG
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATTG
12830466 CCAGAGCAAT
Statistics
Matches: 1672, Mismatches: 179, Indels: 75
0.87 0.09 0.04
Matches are distributed among these distances:
881 6 0.00
882 124 0.07
886 2 0.00
887 97 0.06
888 188 0.11
889 13 0.01
890 229 0.14
891 234 0.14
892 7 0.00
893 260 0.16
894 11 0.01
895 3 0.00
896 3 0.00
897 392 0.23
898 103 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGTTGGG
CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATTGTCGGAGAACCTGACCAAC
GGCATTAGGGTTCAGACGATCGAGGGGGCCGGGGGGTGTGCCCACATGATGTGTGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAATA
GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCTCTCT
GGCCAGCGTAATGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATTAGCAGCACGCAGAGGGGGA
CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:12830359 original size:26 final size:26
Alignment explanation
Indices: 12830329--12830381 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12830319 GTTGACTTGG
*
12830329 GCATAC-GATGTTCATTTCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
12830355 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12830381 G
1 G
12830382 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12831120 original size:26 final size:26
Alignment explanation
Indices: 12831083--12831135 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12831073 GTTAACTTAG
12831083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12831109 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12831135 G
1 G
12831136 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12831988 original size:26 final size:26
Alignment explanation
Indices: 12831952--12832002 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12831942 TGACTTAGGT
12831952 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
12831978 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12832003 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:12833784 original size:26 final size:26
Alignment explanation
Indices: 12833747--12833799 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12833737 GTTGACTTAG
12833747 GCATACGAAGTTCATT-CCTAGTCTAA
1 GCATACGAAGTTCATTACC-AGTCTAA
*
12833773 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
12833799 G
1 G
12833800 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:12835226 original size:900 final size:898
Alignment explanation
Indices: 12831927--12837397 Score: 7442
Period size: 900 Copynumber: 6.1 Consensus size: 898
12831917 CGAGATGAAT
* *
12831927 GCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ** * **
12831992 CCCAGTCTAAGATCGGACCGGACTGAGGGTTTTGGCAGCACAAGCTGGGCTTAGGCATGTGCTGG
66 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * ** * * **
12832057 TGTCACATTTTTCTTCGTCGGGGCACTATCGTCGGATCATCGCCGGAGAATTTGACCGACGGCAT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* *
12832122 TAGTGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACT
196 T-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * * *
12832186 TGG-CCTTCATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCTCATCCCCTTAAATAGCA
260 TGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
12832250 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
12832315 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGAGCATGCTAACAAAAA
389 ATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * ***
12832380 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCTTG
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCA
*
12832445 AACCGTTAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
519 AACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
12832510 TGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGGAATA
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * * *
12832575 TGTAGATGTGCCTAAACCCAGCTACCACCTTATCGATTCACGGCTTGCGCATCCCGTCTCTCTAG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
12832640 CCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTTGATTAGCTTAGGCATACGGAGTTCATT
714 CCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT
* * **
12832705 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGCAAAACATAGAGAGGGAC
779 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGAGGGAC
* * * *
12832770 CCAATCGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCAC
844 CCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
12832825 GCTCGTTTCGTGGCTTGACTGAGGCATACGGAGTTCATT-CCAGTCTAAGCAGACGGAGTCCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
12832889 CCCAGTCTATGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCTTGTGCTGG
66 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
12832954 TGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATTGTCGGAGAACCTGACCGGCGGCAT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * *
12833019 TGGGGTTGCAACGATCGGGGGGGTCGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
196 T-GGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
12833084 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
12833149 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTTGAAGTGTCTGAAATGGGGACACTTTTTTC
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTC
12833214 AATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
388 AATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
12833279 GTACAAAGATCACGTCTACCATGTTTGGGG-CAAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
453 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAAAATTTTAAAAAATCC
* * * * *
12833343 CAAACCGCAAAAAGTTTC-AAAATTATGAAAACTAGAAAACGAGTTGTCTTGCCACGAAACTTCA
517 CAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
12833407 CGTGAAGGCTTAAGGGACCGTTGTATGAATTGACAAGCCATAAAAATGGCATTGGCATGCAGAAA
582 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * *
12833472 TATGAAGATGTGCCTAAACTCACCAACCACCCTATCAATCGACGGCTTGCGCGTCCCGTCTCTCT
647 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * *
12833537 GGCCGACGTAGTGCCCGCCCGCCCACCCACTGGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCA
712 GGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* * * ** * *
12833602 TTTCTAGTCTAAGGTTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGAACACAGA-AGGG
777 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGA-GG
* * * * *
12833666 GACCCGACCGATCCCCGACTTGTGCATCCTGCTCCTCTGGCCGACTGAGCGCTCGCAC
841 GACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
12833724 ACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *** *
12833789 ACCAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTACTGG
66 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
12833854 TGCCGGATTTTTCTTCGTCGGGGCACCATCACC-G-G-A---T-----AACCTGACCGACGGTAT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * *
12833908 TGGGGTTCCGACGATCGAGGAGGCCAGGGGGGTGTGCACACATGATGTGCGTTGGGTGCTGGTAC
196 T-GGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
12833973 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
12834038 TTTGAGATTTTACAGGTTTGCCGCTAGTAGCCATTAACGTGTCTGAAATGGGAACACTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * * *
12834103 AATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCCGATTTTTTTTGCGCATGCCAAAAAAAA
389 ATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
12834168 TACAGGGATCACGTGTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCA
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCA
* * * * **
12834233 AACCGCACAAAGTTTTGAAAATCGTGAAAAATAGAAAGTGAGTCGTCTTGCCATGAAACTTCACG
519 AACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
12834298 TGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACT-TAAAAAT
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAAT
* * * *
12834362 ATGAAGATGTGCCTAAACCCACCTACCACCCTGTCAATTCACGGCTTGCGCATCCCGTCTCTCTA
648 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
12834427 GCCGACGTACTGCCCACCTGCCCGCCCGCTCGTTCCGTCGATTGGCTTAGGCATACGGAGTTCCT
713 GCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
** *
12834492 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACATAGAGAGGGA
778 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGAGGGA
* * *
12834557 CCCGGCCGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
843 CCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
12834613 GCTCGTTTCATGGCTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCAGACGGAGTCCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
12834678 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
66 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
12834743 TGCCGCATTTTTCTTCATCGGGGCACCATCACCGAAGCATTGTCGGAGAACCTGACCGACGGCGT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * *
12834808 TGGTGTTTCGACGATCGGGGGGGTCGGGCAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
196 TGG-GTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
12834873 TTGGCCCTTATATTGGCCCCCAATCCCTCATTAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
12834938 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACCTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
12835003 ATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAA
389 ATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
12835068 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCTTTTCGAAAAATTTTTAAAAAATCCCG
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCA
* * * * * *
12835133 AACCGTAAAAAGTTTCAAAAATCTTGAAAAATAAAAAATGTGTCGTCTTGCCCTGAAACTTCACG
519 AACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * ** *
12835198 TGAAGGTTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGACATTGGCACACAAAAATA
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
12835263 TGAGGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
12835328 CCGACGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTTGTCGATTGGCTTACGCATATGGAGTT
714 CCGACGTAGTGCCCA----CCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTT
* ** ** * * * * *
12835393 CATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGTGGTAAGATCGGTAGCACGTAGAGGG
775 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGAG
* * * * *
12835458 GGACCCGATCGATCCCCGACTTGCGCATGCCGCCCCTCCGACCGGCTGAGCGCCTGCAC
840 GGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
12835517 GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
12835582 CCCAGTCGAAGATTGGGCCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
66 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * * *
12835647 TGCCGTATTTTACCTCGCCGGGGCACCATCATCAGAGCATCGTCGGAGAACCTGACCGGCCGCAT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
** **
12835712 TAGGGTTTTGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
196 T-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
12835777 T-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTGACTCCCCCTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
12835841 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCG-AATGGGGACACTTTTTTCG
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCA
* * * ** *
12835905 AGTGGACACAAAATCTTGTACACTTCAAGTTTTTTCCTG-ATTTTTTT-TCACATGCCAACAAAA
389 ATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAACAAAA
* * * *
12835968 ATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTC
453 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCC
* * **
12836033 AAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCACCTTGCCATGAAACTTCAC
518 AAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
12836098 GAGATGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCTTGCAGAAAT
583 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
12836163 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
648 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
12836228 GCC-AGTGTAGTGCTCACCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATAGGGAG
713 GCCGA-CGTAGTGC-C-CAC-CC-GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAG
* * *
12836292 TTCATTCCCAGTCTAAGAT-TGAACCGGACAGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGA
773 TTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGA
* * ** * * *
12836356 GTGGGACCCGGCTAATCCCCGGCTTGCGCATCCTGCACCTCTGGCCGGCTGAGCGCCCGCAC
837 GAGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
12836418 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
12836483 CCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCACGTGCTGG
66 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * **
12836548 TGCCGCTTTTTTCTTC-ACAGAGGCACCGTCACCGGAGCATCGTCGGAGATCCTGACCGGTGGCA
131 TGCCGCATTTTTCTTCGTC-GGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCA
** * * *
12836612 TTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGGGTACATGATGTGTGATGGGTGCTGGTAC
195 TT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
12836677 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG-A
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
12836741 GTTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTTTGAAATGGGGACACTTTTTTC
324 -TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * **
12836806 AATTGGTCACAAATTCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGCCCATGCCAACAAAA
388 AATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * * *
12836871 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAAAATATAAAATATCC
453 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-GAAAAAATTTTAAAAAATCC
* * * *
12836936 CGAACCAT-AAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCA
517 CAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
12837000 CGTGAAGGCTTAAGGGAGCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
582 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
12837065 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
647 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * *
12837130 GGTCAACGTAGTGCCTACCCGCCCGTCCGCTCGCTCATTTTGTCGGTTGCCTTAGGCATACGGAG
712 GGCCGACGTAGTGCCCACCCGCCCG--C-C-CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAG
* ** * * *
12837195 TTCATTCCCTGTCTAAGATTGGATCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCAGGCATAG
773 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA--CATAG
* * *
12837260 -G-GGGACCCGATCGATCCCTGGA-TTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAC
836 AGAGGGACCCGACCGATCCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
12837321 ACTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
12837386 -CCAGTCTAAGAT
66 CCCAGTCTAAGAT
12837398 GATGTGCGAT
Statistics
Matches: 4024, Mismatches: 493, Indels: 108
0.87 0.11 0.02
Matches are distributed among these distances:
888 153 0.04
889 624 0.16
890 5 0.00
891 1 0.00
892 1 0.00
894 1 0.00
895 1 0.00
897 146 0.04
898 47 0.01
899 489 0.12
900 764 0.19
901 634 0.16
902 317 0.08
903 473 0.12
904 362 0.09
905 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
TGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAT
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAA
CCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGAGGGACCC
GACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
Found at i:12836477 original size:26 final size:26
Alignment explanation
Indices: 12836441--12836493 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12836431 GTTGACTTAG
12836441 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12836467 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12836493 G
1 G
12836494 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12837395 original size:25 final size:26
Alignment explanation
Indices: 12837344--12837395 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12837334 GTTGTCTTAG
*
12837344 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12837370 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12837395 G
1 G
12837396 ATGATGTGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12838147 original size:159 final size:159
Alignment explanation
Indices: 12837888--12838264 Score: 386
Period size: 159 Copynumber: 2.4 Consensus size: 159
12837878 GCGTAGTGCC
* * * * *
12837888 CGCCCGCCCGCTCGTTTCGTCGGTT-AGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCAAACAGAGTTCATTCCTAGTCTAAGATCAG
** * * * * * *
12837952 ACCAGACTGAGGGTTGTAGCAGTAGGATCAGTAGCACGTAGAGGAGGA-CCGGATCGATCCTCGA
65 ACCAGACCAAGGGTTGCAGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGGAT-GATCCCCGA
* * *
12838016 CTTGAC-CGTCCTGCCCCTCTGGTCGGTTGAG
129 CTTG-CGCATCCCGCCCCTCTGGCCGGTTGAG
* *
12838047 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTTATTCCTAGTCTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCTAGTCTAAGATCAGA
* * * *
12838112 CC-GTACCAAGGGTTGCGGCAGCAAGATC-GACAGCACGCAGAGGGGGACCCGGCTGATCCCCGG
66 CCAG-ACCAAGGGTTGCAGCAGCAAGATCAG-CAGCACGCAGAGGAGGACCCGGATGATCCCCGA
*
12838175 CTTGCGCATCCCGCCCCTCTGGCCTGTTGAG
129 CTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
* * * ** ** * *
12838206 CGCCCGCACCCTCATTTCGTGAGTTGACTTTCGCTTACGGAGTTCATTCCCAGTCTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCTAGTCTAAG
12838265 CATACGAAGT
Statistics
Matches: 179, Mismatches: 34, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
158 3 0.02
159 170 0.95
160 6 0.03
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (159 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCTAGTCTAAGATCAGA
CCAGACCAAGGGTTGCAGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGGATGATCCCCGACT
TGCGCATCCCGCCCCTCTGGCCGGTTGAG
Found at i:12838277 original size:26 final size:26
Alignment explanation
Indices: 12838241--12838290 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12838231 GACTTTCGCT
* *
12838241 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAATCTAAGCA
12838267 TACGAAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
12838291 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCA
Found at i:12839148 original size:26 final size:26
Alignment explanation
Indices: 12839112--12839164 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12839102 GTTGACTTAG
*
12839112 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12839138 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12839164 G
1 G
12839165 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12839812 original size:26 final size:27
Alignment explanation
Indices: 12839771--12839825 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
12839761 CATGTTTTGA
12839771 CTTAGGCATAAGGAGTTCATTCCCAGT
1 CTTAGGCATAAGGAGTTCATTCCCAGT
*
12839798 CTTA-GCATACGGAGTTCATTCCCAGT
1 CTTAGGCATAAGGAGTTCATTCCCAGT
12839824 CT
1 CT
12839826 AAGATCGGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (27 bp):
CTTAGGCATAAGGAGTTCATTCCCAGT
Found at i:12840290 original size:26 final size:26
Alignment explanation
Indices: 12840251--12840307 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
12840241 CTCTTTCCAA
* * **
12840251 AAAAATTTTAAAAAATCTTGAATCAT
1 AAAAAGTTTAAAAAATCGTGAAAAAT
*
12840277 AAAAAGTTTCAAAAATCGTGAAAAAT
1 AAAAAGTTTAAAAAATCGTGAAAAAT
12840303 AAAAA
1 AAAAA
12840308 ACAAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCGTGAAAAAT
Found at i:12841080 original size:881 final size:875
Alignment explanation
Indices: 12839801--12844108 Score: 4954
Period size: 898 Copynumber: 4.8 Consensus size: 875
12839791 TCCCAGTCTT
* ** * *
12839801 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGAGGTAGCACATGCTGG
1 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGG
* * * * * * * * *
12839866 GCTCGGGCATGGGTTGGTGCCGTATTTTTCTTTGTTGGGGCACCATCGTTGGAGCATC-ACTAGA
66 GCTCGGACATGTGCTGGTGCCGCATTTTTC-TTCTCGGGGCACCATCGTCGGAGCATCGTC-GGA
*
12839930 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGTTG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
12839994 TGC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCATCAAACCTCGAGAACTC
194 TGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCATCAAACCTCGAGAACTC
* *
12840058 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12840123 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12840188 TATACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
* * ** * *
12840253 AAATTTTAAAAAATCTTGAATCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12840318 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12840383 CATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGATTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12840448 CGCATCTCGTCTCTCTAGCCGGTGTAGTGCCCACCTGCCCGCCTGCCCGTCCGCTCGTTTTGTCA
648 CGCATCCCGTCTCTCTGGCCGGTGTAGTG----CCT---CGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * *
12840513 GTTTGCTTAGGCATACGGAGTTCATT-CCAGTCAAAGATCAAATCGGACCAAGGGTTGCGGTAGT
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTGCAGCAGC
* * * * * * ***
12840577 AGGATCGGCAGCACACAGAGGGGGACTCGGTCGATCCACGGCTTGCGCATCTTGCCCCTCTGGCC
771 AGGATCGACAGCACACAGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCCACCCCTCTGGCC
*
12840642 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTT-G
836 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTTCG
* * * *
12840681 -GCATATGGAGTTCATTCCCAGTCTACGATCGGACCAGACCGAGGGTTGCGACAGCACAAGCTGG
1 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGG
*
12840745 GCTCGGACATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGTCGGAGCATAGTCGGAG
66 GCTCGGACATGTGCTGGTGCCGCATTTTTCTTCT-CGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
12840810 AACCTAACCGACGGCGTTGGGGTTCCGACGATCGGTGGGGCCGGGGGAGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATG
** * * *
12840875 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTGCTATATCTCATAAAACCTTGAGAACTCA
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCATCAAACCTCGAGAACTCA
* *
12840940 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12841005 TGGGGACACTTTTTTCAAATGGTCAAAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTC
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** * * *
12841070 GTGCATGCCAACAAAAATACAAGGATCATGTCTTCCAAGTTTGATGCCAAAACGCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
* ** * *
12841135 AACTTTAAAAAATCTTTAACCACAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAATCTCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12841199 TTGCCATGAAACTACACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12841264 CATTGGCATGCAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12841329 CGCATCCCGTCTCTCTGACCGGCGTAGTGCC-CGCCCTCCCTCCCGCTCGCCCGTTCATTTTGTC
648 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTCGCCCGCCCGCCCGCT----CG----TTTCGTC
* * * * * *
12841393 GATTGGCTTAGGCATACGGAGTTCATTGCTAGTCTAAGATCAGACCGGACCGAAAGG-TGCAGCA
705 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACC-AAGGGTTGCAGCA
* ** * * *
12841457 GCAAGATCGACAGCACACAGAGGGGGACCCAACCGATCCCCGACTTGTGCATCCCACCCTTCTGG
769 GCAGGATCGACAGCACACAGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCCACCCCTCTGG
* *
12841522 CCGACTGAGCGACCGCACGTTCGTTTCATGGGTTGACTTAGGCATACG
834 CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT-----T-CG
* * **
12841570 AAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAATCTAAGATTGGACTGGACCAAGGGT
1 -AG--CA-T---A---T--G-----G-AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGT
* * *
12841635 TGCGGCAGCACATGCTGGGCTC-GAGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGTACCAC
48 TGCGGCAGCACATGCTGGGCTCGGA-CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCAT
* * * * ** *
12841699 CGCCGGAGCATCGCCGGAGAACCTGACC-AGCGACATTAGGGTTTTGGCGAT---------C---
111 CGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * * * *
12841751 ----TGCGCGCGCATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCG
175 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCTCT
* *
12841812 CATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGT
239 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
12841876 AGCCATTAAAGTTTCTGAAATGGGGACA-TTTTTCTCAAATGGTCACAAAATATTGTACACTTCG
304 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTT-TCAAATGGTCACAAAATCTTGTACACTTCG
* * *
12841940 AGTTGTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGG
368 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
12842005 GGCCAAAACTCTTTCCGAAAAAATTTAAAAAAATCCACAATCCCGAATCGTAAAAAGTTTTAAAA
433 GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAAT---C--T--CGAACCGCAAAAAGTTTCAAAA
* * *
12842070 ATCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTATGGGACCATT
491 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* **
12842135 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTGCCTAAACAGA
556 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
12842200 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTTTGGGCGATGTAGTG--TCGCCCG
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTCGCCCG
* *
12842263 CCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
686 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATC
** ** * * * * *
12842328 AAACCAAGGGTTGTGGTAGTAGGATCGACAGCACGCAGATGGGGACCCGGCCAATCCTCGACTTG
751 GGACCAAGGGTTGCAGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCAATCCCCGACTTG
* * * * *
12842393 CGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATAC
816 CGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCAT-GG--G--TT--G---AC
12842458 GGAGTTCATTCCCAG
871 -----T--TT--C-G
* *
12842473 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATG
1 ----AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATG
* * * * **
12842538 CTGGGCTCGGGCATGTGCTGGAGCCGCATTTTGCTTCATCGAGGCACCATCCCCGGAGCATCGTC
62 CTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGTC
* * * ** * * **
12842603 GGAGAACCTAACCGGCGACATTGGGGTTCCGATTA-CCGAGGGGCCGAGGGGTTTGTGCGCACAT
126 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACAT
* * *
12842667 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAATAA
190 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCATCAAACCTCGAGAA
12842732 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
12842797 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
12842862 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACTCCTT-CG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCG
* *
12842926 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTC
450 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
** *
12842991 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAAACCATTCTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
12843056 TTGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
580 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** *
12843121 TTGCACATCCCGTCTCTCTGGTCGGTGTAGTG-CTTGCCCTTCCGTCCGCTCGTTTCGTCGGTTG
645 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
12843185 GCTTAGGTACACGGAGTTCATTCCCAGTCTAAGATTCGAAT-GGACC-GGGTGTTGCAGCAGCAG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAAATCGGACCAAGG-GTTGCAGCAGCAG
* * * * * * *
12843248 GATTGGCAACACGCAGAGGGGGACCTGGCCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGG
773 GATCGACAGCACACAGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGA
* * *
12843313 TTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAAGCATACGG
838 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT-----T-C-G
*
12843358 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTT
1 AG--CA-T---A---T--G------GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTT
* * ** * *
12843423 ACGGTAGCACATGCTGGGCTC-GAGCATGTGCTGGTGATGCATTTTTCTTTGTCGAGGCACCATC
49 GCGGCAGCACATGCTGGGCTCGGA-CATGTGCTGGTGCCGCATTTTTC-TTCTCGGGGCACCATC
* * * * *
12843487 ATCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGG
112 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * **
12843552 GGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTG
177 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCTCTCA
* *
12843617 TCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
241 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* **
12843682 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTACACACTTCGAGT
306 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
12843747 TTTTACCTGAATTTTTTTTTGCATACCAAAAAAAATACAAGGATCATGTCT-CCAAAGTTTGGGG
371 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTTGGGG
12843811 CCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAA
435 CCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
12843875 AAATAGATAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACGTTGTATGAAT
499 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
12843940 TTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
564 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
12844004 CCTATCGATCCACAGCTTGCGCATACCGCCCCTCTGGCCGGCTG-A--G---CG--CG--CGCAC
629 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-TGTAGTGCCTCGCCCGCCCGCCC
* * * *
12844059 GGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAG
693 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12844109 CATACGAAGT
Statistics
Matches: 2936, Mismatches: 360, Indels: 253
0.83 0.10 0.07
Matches are distributed among these distances:
873 12 0.00
877 4 0.00
878 3 0.00
879 143 0.05
880 5 0.00
881 485 0.17
882 116 0.04
883 7 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 2 0.00
888 6 0.00
889 258 0.09
890 10 0.00
891 273 0.09
892 28 0.01
893 7 0.00
894 4 0.00
895 3 0.00
896 2 0.00
897 211 0.07
898 518 0.18
899 299 0.10
900 126 0.04
901 2 0.00
902 2 0.00
903 2 0.00
904 51 0.02
905 214 0.07
906 9 0.00
907 4 0.00
908 125 0.04
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (875 bp):
AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGG
GCTCGGACATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGTGTAGTGCCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTGCAGCAGCAGGATCGACA
GCACACAGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTTCG
Found at i:12841593 original size:26 final size:26
Alignment explanation
Indices: 12841563--12841615 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12841553 GTTGACTTAG
*
12841563 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
12841589 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12841615 G
1 G
12841616 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12842482 original size:26 final size:26
Alignment explanation
Indices: 12842452--12842504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12842442 GTTGACTTAG
12842452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12842478 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12842504 G
1 G
12842505 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12843386 original size:26 final size:26
Alignment explanation
Indices: 12843347--12843402 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12843337 TTGGTTGACT
*
12843347 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
12843373 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
12843399 TAAG
1 TAAG
12843403 ATCGGATCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:12844111 original size:26 final size:26
Alignment explanation
Indices: 12844082--12844134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12844072 GTTGACTTAG
* *
12844082 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12844108 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12844134 G
1 G
12844135 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12844694 original size:731 final size:731
Alignment explanation
Indices: 12843286--12844836 Score: 2334
Period size: 731 Copynumber: 2.1 Consensus size: 731
12843276 CCAATCCCCG
* * * *
12843286 GCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAAG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTCGGTTGACTTAGG
12843351 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACC
65 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACC
* * * **
12843416 AAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGATGCATTTTTCTTTGTCGAGGC
130 AAGGGTTACGATAGCACATGCTGGGCTCAAGCATGTGCTGGTGACGCATTTTTCTTCATCGAGGC
* * *
12843481 ACCATCATCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGC
195 ACCATCACCAGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGC
* * *
12843546 CGGGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCTTAT
260 CGGGGGGGTGTGAGAACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
12843611 CCCTTGTCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
325 CCCTTATCAAACCTTCAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
12843676 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTACACACT
390 CAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTACACACT
* *
12843741 TCGAGTTTTTACCTGAATTTTTTTTTGCATACCAAAAAAAATACAAGGATCATGTCTCCAAAGTT
455 TCGAGTTTTTACCTGAATTTTTTTATGCATACCAAAAAAAATAAAAGGATCATGTCTCCAAAGTT
* *
12843806 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
520 TGGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCG
* *
12843871 TGAAAAATAGATAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACGTTGTAT
585 TGAAAAATAAATAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTAT
* * *
12843936 GAATTTACAAGCCATAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
650 GAATTTACAAGCCATAAAATCGCATTGGCACGCAGAAATATGAAGATGTGCCCAAACCCACCTAC
*
12844001 CACCCTATCGATCCACA
715 CACCATATCGATCCACA
* * *
12844018 GCTTGCGCATACCGCCCCTCTGGCCGGCTGAGCGCGCGCACGGTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC-CGCACGCTCGTTTCGTCGGTTGACTTAGG
* * * *
12844083 CATACGGAGTTCATTCCCATTCTAAGCATAC-GAAGTTCATTCCTAGTCTAAGATTGGATCGGAC
65 CATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGATCAGAC
*
12844147 CGAA-GGTTACGATAGCACATGCTGGGCTCAAGCATGTGCTGGTGACGCATTTTTCTTCATCGGG
129 C-AAGGGTTACGATAGCACATGCTGGGCTCAAGCATGTGCTGGTGACGCATTTTTCTTCATCGAG
* * * * *
12844211 GCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGTTTCGATGATCGGGGGG
193 GCACCATCACCAGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGG
*
12844276 GCC-GGGGGGTGTGAGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
258 GCCGGGGGGGTGTGAGAACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCT
12844340 ATCCCTTATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
323 ATCCCTTATCAAACCTTCAA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * **
12844404 TGTCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTAC
387 TGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTACAC
* * *
12844469 ACTTCGAGTTCTTT-GCTGAATTTTTTTATGCA-AGCCAAAAAGAGTAAAAGGATCACGTGT-TC
452 ACTTCGAGTT-TTTACCTGAATTTTTTTATGCATA-CCAAAAAAAATAAAAGGATCA--TGTCTC
12844531 C-AAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATC-CGAAACCACAAAAAGTTTC
513 CAAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATCTCG-AACCACAAAAAGTTTC
*
12844593 AAAAATCGTGAAAAATAAA-ATATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
577 AAAAATCGTGAAAAATAAATA-ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
12844657 CCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCACGCAGAAATATGAAGATGTGCCCAA
641 ACATTGTATGAATTTACAAGCCAT-AAAATCGCATTGGCACGCAGAAATATGAAGATGTGCCCAA
*
12844722 ACCCACCTACCACCATATCGATCCACG
705 ACCCACCTACCACCATATCGATCCACA
* * * * * * *
12844749 GCTTGCGCATCCCGTCTCTCTAGCCGACAT-AGTGACCGCCCGCTCGTTTCGTCGGTTGGCTTAG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGC-TGAGCG-CCGCACGCTCGTTTCGTCGGTTGACTTAG
**
12844813 GCATACAAAGTTCATTCCCAGTCT
64 GCATACGGAGTTCATTCCCAGTCT
12844837 TAGATTGGAT
Statistics
Matches: 741, Mismatches: 65, Indels: 27
0.89 0.08 0.03
Matches are distributed among these distances:
729 3 0.00
730 122 0.16
731 373 0.50
732 238 0.32
733 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (731 bp):
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTCGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCA
AGGGTTACGATAGCACATGCTGGGCTCAAGCATGTGCTGGTGACGCATTTTTCTTCATCGAGGCA
CCATCACCAGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCC
GGGGGGGTGTGAGAACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTTATCAAACCTTCAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTACACACTT
CGAGTTTTTACCTGAATTTTTTTATGCATACCAAAAAAAATAAAAGGATCATGTCTCCAAAGTTT
GGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGT
GAAAAATAAATAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATG
AATTTACAAGCCATAAAATCGCATTGGCACGCAGAAATATGAAGATGTGCCCAAACCCACCTACC
ACCATATCGATCCACA
Found at i:12845012 original size:26 final size:26
Alignment explanation
Indices: 12844974--12845024 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12844964 TGACTTAGGT
12844974 ATACGGAGCTCATTCCCAGTCTAAGC
1 ATACGGAGCTCATTCCCAGTCTAAGC
* * *
12845000 ATACGGAGTTCATTCCTAGTGTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
12845025 ATTGAACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGC
Found at i:12845844 original size:26 final size:26
Alignment explanation
Indices: 12845808--12845860 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12845798 GTTGACTTAG
12845808 GCATACGGAGTTCATTCGT-AGTCTAA
1 GCATACGGAGTTCATTC-TCAGTCTAA
12845834 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
12845860 G
1 G
12845861 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:12846186 original size:836 final size:828
Alignment explanation
Indices: 12844582--12846237 Score: 2250
Period size: 836 Copynumber: 2.0 Consensus size: 828
12844572 TCCGAAACCA
* * * *
12844582 CAAAAAGTTTCAAAAATCGTGAAAAATAAAATATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 CAAAAAGTTTCAAAAATCATGAAAAATAAAATACGAGTCGTCTCGCCATGAAACTTCACATGAAG
* *
12844647 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCACGCAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGCGCATTGGCACACAGAAATATGAAG
12844712 ATGTGCCCAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGAC
131 ATGTGCCCAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGAC
* ** * *
12844777 ATAGTGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTTAGAT
196 ATAGCGACCGCCCGCTCGTTTCGTCGACTGGCTTAGGCATACAAAGTTCATCCCCAGTCTAAGAT
* * * * **** * ***
12844842 TGGATCAGACTGAGGGTTGCGAAAGCAGGATTGGTAGCATGCAGAGGGGGACCCGATTGATCCCC
261 CGGACCAGACCGAGGGTTGCGAAAGCAAGATCAACAGCACGCAGAGGGGGACCCGACCAATCCCC
** * ** * *
12844907 GACTTGTGCATCCCGCCCTTCTGGCCGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
326 GACTTACGCATCCCGCCCCTCTGGCAAGCTAAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAG
* * * *
12844972 GTATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATTGAACCGGAT
391 GCATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGAACCGGAC
* * **
12845037 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
456 CGAGGGTTGAGACAGCACATGCTGGGATCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
*
12845102 CACCTTCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGG
521 CACCTTCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGG
* *
12845167 CTAGGGGGGTGTGCGCACATGATGTAGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCTCTAT
586 CTAGGGGGGTGTGCGCACATGATGTAGATGGGTGCTAGTACTTAGCCCTTATATTGACCCTCTAT
* * * * *
12845232 GATTTATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
651 CACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
* *
12845297 TAGTAGCAATTAAAGTGCCTAAAATGGAGACATTTTTTTTCAAATGGTCACAAAATCTTGTACAC
716 CAGTAGCAATTAAAGTGCCTAAAATGGAGACATCTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
12845362 TTCGAGTTTTTAGTTAATTTTTTTTGTGCATGCTAACAAATGGAACTG
781 TTCGAGTTTTTAGTTAATTTTTTTTGTGCATGCCAACAAATGGAACTG
12845410 CAAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGAGTCGTCTCGCCATGAAACTTCACATGAA
1 CAAAAAGTTTCAAAAATCATGAAAAATA-AAATACGAGTCGTCTCGCCATGAAACTTCACATGAA
* * *
12845474 GGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAAGGGCATTGGCACATAGAAATATGAA
65 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGCGCATTGGCACACAGAAATATGAA
* * * *
12845539 GGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
130 GATGTGCCCAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGA
* * **
12845604 CGCAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGACTGGCTTAGGCATATGAAGTTCATCCCCA
195 --CA-T---AG--CGACCGCCCGCTCGTTTCGTCGACTGGCTTAGGCATACAAAGTTCATCCCCA
* ** *
12845669 GTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAAGATCAACAGCACGCAGAGGGGGACCCGA
252 GTCTAAGATCGGACCAGACCGAGGGTTGCGAAAGCAAGATCAACAGCACGCAGAGGGGGACCCGA
* * * * *
12845734 CCAATTCCCGGCTTACGCGTCTCGCCCCTCTGGCAAGCTGAGCGCCCGCACGCTCGTTTCGTGAG
317 CCAATCCCCGACTTACGCATCCCGCCCCTCTGGCAAGCTAAGCGCCCGCACGCTCGTTTCGTGAG
* **
12845799 TTGACTTAGGCATACGGAGTTCATTCGTAGTCTAAGCATACGGAGTTCATT-CTCAGTCTAAGAT
382 TTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCT-AGTCTAAGAT
* * *
12845863 CAG-ACCGGACCGAGGGTTGTAG-TAGCTCATGCTGGGATCGGGCATGTGCTGGTGCCGTATTTT
446 -AGAACCGGACCGAGGGTTG-AGACAGCACATGCTGGGATCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
12845926 TCTTCACCGGGGCA-CTATCACCGGAGTATCG-CTGGAGAACTTGATCGGTGGCATTGGGGTTTC
509 TCTTCACCGGGGCACCT-TCACCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * * *
12845989 GACGATCGGGGGGGC-CGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTATTACTTGGCCCT
572 GACGATCAGGGGGGCTAGGGGGG-TGTGCGCACATGATGT-AGATGGGTGCTAGTACTTAGCCCT
* * *
12846053 TATATTGACACC-CTATCCCTCATCAAACTTCAAGAACTCAGACCCCCTTAAAGAGCATTTGAGA
635 TATATTGAC-CCTCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * * *
12846117 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGT
699 TTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGCCTAAAATGGAGACATCTTTTTTCAAATGGT
*
12846181 CACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCCAACAAA
764 CACAAAATCTTGTACACTTCGAGTTTTTAGTTAATTTTTTTTGTGCATGCCAACAAA
12846238 AATACAAGGA
Statistics
Matches: 717, Mismatches: 94, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
828 177 0.25
829 3 0.00
830 2 0.00
831 1 0.00
834 1 0.00
835 11 0.02
836 403 0.56
837 117 0.16
838 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (828 bp):
CAAAAAGTTTCAAAAATCATGAAAAATAAAATACGAGTCGTCTCGCCATGAAACTTCACATGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGCGCATTGGCACACAGAAATATGAAG
ATGTGCCCAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGAC
ATAGCGACCGCCCGCTCGTTTCGTCGACTGGCTTAGGCATACAAAGTTCATCCCCAGTCTAAGAT
CGGACCAGACCGAGGGTTGCGAAAGCAAGATCAACAGCACGCAGAGGGGGACCCGACCAATCCCC
GACTTACGCATCCCGCCCCTCTGGCAAGCTAAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAG
GCATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGAACCGGAC
CGAGGGTTGAGACAGCACATGCTGGGATCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
CACCTTCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGG
CTAGGGGGGTGTGCGCACATGATGTAGATGGGTGCTAGTACTTAGCCCTTATATTGACCCTCTAT
CACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
CAGTAGCAATTAAAGTGCCTAAAATGGAGACATCTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGTTAATTTTTTTTGTGCATGCCAACAAATGGAACTG
Found at i:12848697 original size:880 final size:874
Alignment explanation
Indices: 12846531--12848990 Score: 3366
Period size: 880 Copynumber: 2.8 Consensus size: 874
12846521 CGCCCGCCCA
* * * * *
12846531 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCA-GACCGA
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGATCGA
* * * * * *
12846595 GGGTTGCAGCAGCACATACTGGGCTCGCGTATGTGCTTGTGCCGTATTTTTCTTTGTCAGGGCAC
65 GGGTTGCGGCAGCACATGCTGGGCTCGC-CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAC
* * * *
12846660 CATCGCCAGAGCATCGTCGGAGAACCTTTATCGGCGGTATTGAGGTTTCGGCGATCGAGGGGGCC
129 CATCGCC-GAGCATC-AC-GAGAACC-TGATCGGCGGCATTGGGGTTTCGGCGATCGAGGGGGCC
* *
12846725 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCTTATC
190 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
12846790 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCC
255 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
12846855 AGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
320 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
** * * ** * **
12846920 CAAGTTTTTAGCTGAATGTTTTTGTGCACGTGAATAAAAATACAAGGATTACGTCTAAAAAGTTT
385 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTT
** * *
12846985 GGGGTGAGAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGA
450 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATC-A
* *
12847050 -GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-ATGACAATTGTA
514 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGA-GACCATTGTA
* *
12847113 TGAATTTACAAGCCATAAAAATGGCATTGGC-GCTCAGAAATAGGAAGATTTGCCTAAACCCACC
578 TGAATTTACAAGCCATAAAAATGGCATTGGCTG-T-AGAAATATGAAGATGTGCCTAAACCCACC
* * * *
12847177 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCTCGCCTGCTC
641 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCC
* * * * * *
12847242 G-CCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
706 GCCCCACCCGATCATTTCGTCCGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGAA
* * ** * * *
12847306 TCGGACTAAGGGTTATGGTAGCAAGATCGGCAGCACGCATAGGGGGTCCCAGCCGATCCCCGACT
771 CCGAACTAAGGGTTACAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGACT
* * *
12847371 TTCGCATCCTGCCCCTCTAGCCGACTGAGTGCCCGTACG
836 TGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGTACG
* * * *
12847410 CTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAAT-GA
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGG-ATCGA
* * * * * ** * *
12847474 GGATTGTGGCAGCACATGTTGGGCTCGAGCTTGTGCTGGTGCCACATTTTTCTTCATCGGGACAC
65 GGGTTGCGGCAGCACATGCTGGGCTCG-CCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAC
* *
12847539 TAT---C--GC--CA-GAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGG
129 CATCGCCGAGCATCACGAGAACCTGATCGGCGGCATTGGGGTTTCGGCGATCGAGGGGGCCGGGG
* *
12847596 GGGTGTGCGCATATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
194 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
12847661 ATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
259 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
12847726 GCCATTAAAGTGTCTGAAATCGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
324 GCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
* * *
12847791 TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
389 TTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
12847856 CCAAAACTCCTTC-G-AAAAATTTTCAAAAATCCCAAACCGCAAAAAGTTTTTAAAATCATGAAA
454 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAA
* *
12847919 AATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATT
519 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGAGACCATTGTATGAATT
*
12847984 TACAAGCTATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
584 TACAAGCCATAAAAATGGCATTGGC-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
12848049 CTATCGATGCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCGCCCATT
648 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCGCCC---
*
12848114 CACCCGATTATTTCGTCCGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGA
710 CACCCGATCATTTCGTCCGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGA
* * * * * **
12848179 ACTGAGGGTTGCAGCAGCAGGATCGGCAGCATGTAGAGGGGGACCC-GATTGATCCCC-AGCTTG
775 ACTAAGGGTTACAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGA-CTTG
* **
12848242 CGCATCCCGCCTCTCT-GACCGGTTGAGCGCCCGTACG
838 CGCATCCCGCCCCTCTAG-CCGACTGAGCGCCCGTACG
*
12848279 CTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGGATCGAG
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGGATCGAG
* * * *
12848344 GGTTGCGGCAGCACATGCTGGGGTTTGCCATGTGATGGTGCCGTATTTTTCTTCGTCGGGGTACC
66 GGTTGCGGCAGCACATGCT-GGGCTCGCCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACC
** *
12848409 ATCGCCGGAGCATCACCGAAGAACCTGA-CGGGCGGCATTGGGGTTTCGATGATCG-GGAGGGTC
130 ATCGCC-GAGCATCA-CG-AGAACCTGATC-GGCGGCATTGGGGTTTCGGCGATCGAGG-GGGCC
*
12848472 GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
190 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
12848537 CCTTATCAAACTTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCC
255 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
12848602 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
320 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
12848667 TGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTT
385 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTT
** * * *
12848732 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAAT-G
450 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-TAAAAATCA
*
12848796 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG-ATAAGGCTTAAGAGACCATTGTA
514 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTA-AAGGCTTAAGAGACCATTGTA
* * *
12848860 TGAATTTACAAGCCATAAAAATGGTATTGGCTTGCAGAAATATGAAGATGTGCGTAAACCCACCT
578 TGAATTTACAAGCCATAAAAATGGCATTGGC-TGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * **
12848925 ACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGC-CTGCCCGCCC
642 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTC-GCCCGCCC
12848989 GC
706 GC
12848991 TCGTTTCATC
Statistics
Matches: 1391, Mismatches: 156, Indels: 65
0.86 0.10 0.04
Matches are distributed among these distances:
864 1 0.00
865 215 0.15
866 4 0.00
867 286 0.21
868 12 0.01
869 237 0.17
870 5 0.00
871 1 0.00
872 1 0.00
873 2 0.00
875 2 0.00
876 1 0.00
877 2 0.00
879 107 0.08
880 299 0.21
881 3 0.00
882 208 0.15
883 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (874 bp):
CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGGATCGAG
GGTTGCGGCAGCACATGCTGGGCTCGCCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
TCGCCGAGCATCACGAGAACCTGATCGGCGGCATTGGGGTTTCGGCGATCGAGGGGGCCGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGAGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCTGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCGCCCCACCCG
ATCATTTCGTCCGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGAACTAAG
GGTTACAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCC
GCCCCTCTAGCCGACTGAGCGCCCGTACG
Found at i:12849042 original size:26 final size:26
Alignment explanation
Indices: 12849012--12849064 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12849002 GTTGGCTTAG
*
12849012 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
*
12849038 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
12849064 G
1 G
12849065 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAATCTAA
Found at i:12849894 original size:26 final size:25
Alignment explanation
Indices: 12849858--12849909 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12849848 GTGGACTTAG
* *
12849858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATT-CCAATCTAA
12849884 GCATACAGAGTTCATTCCAATCTAA
1 GCATACAGAGTTCATTCCAATCTAA
12849909 G
1 G
12849910 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAATCTAA
Found at i:12851383 original size:900 final size:900
Alignment explanation
Indices: 12849148--12851676 Score: 3626
Period size: 903 Copynumber: 2.8 Consensus size: 900
12849138 GGGGCACCAT
*
12849148 CGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCC
1 CGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* ** * * *
12849213 CTATCTCTCATCAAACCTCGAGAACTCATGCTCCCTTAAGAGCATTTTAAATTTTACAGGTTTGC
65 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
12849278 TGCCAGGAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTATAC
130 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
12849343 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAA
195 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAA
* * * *
12849408 GTTTGGTGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACCAAAAAAAGTTTCAAAAA
260 GTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACC-ATAAAAGTTTCAAAAA
*
12849473 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG-TTGAAGGGACCATT
324 TCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATT
* * *
12849537 GTATGAATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCG
388 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
** * * *
12849602 CAAACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
453 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGC
* * * *
12849666 CCACCCGCCCGCTCGTTTCATCGGTTGGCTTGGGCATACGTAGTTCCTTGCC-AGTCTAAGATCA
518 CCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATCA
* * * * * * *
12849730 CACCAGACCGAGGGTTGCGGCAACGAGATTGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGA
582 GACTAGACCGAGGGTTGCGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
** * * * *
12849795 CTTAGGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTAGGTGGACTTAGGC
647 CTTTCGCATCCCG-CCCTCTGGCCGACAGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGC
**
12849860 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAATCTAAGATCGGACCAGACCGA
711 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGCACATTCCAATCTAAGATCGGACCAGACCGA
* * **
12849925 GGGCTGCAACAGCACGTGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCAC
776 GGGCTGCAACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
* * * * * *
12849990 CATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTGGGGG
841 CATCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTGAGGTTCCGAAGATTAGGGG
*
12850050 CGCCGAGGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1 CGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
12850115 CTATCCCTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTG
65 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTG
* *
12850180 CTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTA
129 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
12850245 CACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATATGAGGATCACGTCTACCA
194 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCA
* *
12850310 ACTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCATTAAAAGTTTTAAAA
259 AGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCA-TAAAAGTTTCAAAA
* * *
12850375 ATCGTGAAAAATAGAAAACGAGTCATCTCGCCATTAAACTTCACATGAAGGCTTAAGGGACCATT
323 ATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
12850440 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
388 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
12850505 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGC
453 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGC
* *
12850570 CCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCAG
518 CCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG
* * * *
12850635 ACTAGACTGAGGGTTGCGGGAGCAAGATTGGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGC
583 ACTAGACCGAGGGTTGCGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * *
12850700 TTTCGCATCCCGCCCATCTGGCCGACAGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGTA
648 TTTCGCATCCCGCCC-TCTGGCCGACAGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCA
* * * *
12850765 TA-TGAGTTCATTCCCAGTCTAAGCATACGGAGCACATTCCCACTCTAAGATTGGACCAGACC-A
712 TACGGAGTTCATTCCCAGTCTAAGCATACAGAGCACATT-CCAATCTAAGATCGGACCAGACCGA
* ** * **
12850828 GGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
776 -GGGCTGCAACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCA
* *
12850893 CCATTG-CTGGAGCATCACCGGAGAACCTGACCGACAGCATTGAGGTTCCGACGATTAGGGG
840 CCATCGTC-GGAGCATCACCGGAGAACCTGACCGACAGCATTGAGGTTCCGAAGATTAGGGG
12850954 -GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
1 CGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
12851018 TATCGCTCATCAAACCTCGAGAACTCACACCCCCTTAA-AGCATTTGAGATTTTACAGGTTTGCT
66 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12851082 GCCAGTAGCCATTAAAGTGTATGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
131 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * **
12851147 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCTTGTCTACCAAG
196 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAG
* **
12851212 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCTGAACCATAAAAGGTTTCAAAAAT
261 TTTGGTGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCATAAAA-GTTTCAAAAAT
* * * *
12851277 CATGAAAAATAAAAAATGAGTCGTCTCGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGT
325 CGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** *
12851342 ATGATTTTACAATTCATAAAAATGGCATTGGCACGCAGAAATCTGAAGATGTGCCTAAACCCACC
390 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
*
12851407 TACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGGCATAGT--------G---
455 TACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
* ** *
12851461 A-CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGAT
520 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
* * * * * * *
12851525 TAGACCAAGGGTTGCGACAG-TAGGTTCGACAGCACCCAGAGGGGGACCCTACCGATCCCCGGCT
585 TAGACCGAGGGTTGCGGCAGCAAGATT-GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * * * *
12851589 TTTGCATCTCGGCCCTCTGGCCGATAGAGTGCCCGCCCGCTCGTTTCATCGGTT-AGCTTAGGCA
649 TTCGCATC-CCGCCCTCTGGCCGACAGAGCGCCCGCACGCTCGTTTCGTAGGTTGA-CTTAGGCA
*
12851653 TACGGAGTTCATTCCCAATCTAAG
712 TACGGAGTTCATTCCCAGTCTAAG
12851677 ATCAGAAAGG
Statistics
Matches: 1463, Mismatches: 149, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
887 5 0.00
888 154 0.11
889 25 0.02
892 1 0.00
899 5 0.00
900 368 0.25
901 2 0.00
902 182 0.12
903 375 0.26
904 346 0.24
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
CGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAG
TTTGGTGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCATAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCA
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACT
AGACCGAGGGTTGCGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTT
CGCATCCCGCCCTCTGGCCGACAGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACAGAGCACATTCCAATCTAAGATCGGACCAGACCGAGGGCT
GCAACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
TCGGAGCATCACCGGAGAACCTGACCGACAGCATTGAGGTTCCGAAGATTAGGGG
Found at i:12852509 original size:26 final size:26
Alignment explanation
Indices: 12852473--12852525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12852463 GTTGACTTAG
12852473 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12852499 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12852525 G
1 G
12852526 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12856189 original size:26 final size:26
Alignment explanation
Indices: 12856153--12856205 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12856143 GTTGACTTAG
*
12856153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12856179 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12856205 G
1 G
12856206 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12857072 original size:26 final size:26
Alignment explanation
Indices: 12857036--12857088 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12857026 GTTGACTTAG
12857036 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12857062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12857088 G
1 G
12857089 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12857969 original size:26 final size:26
Alignment explanation
Indices: 12857939--12858016 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
12857929 GTTGACTTAG
* *
12857939 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12857965 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
12857991 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12858017 TATCGAACCG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:12860405 original size:876 final size:876
Alignment explanation
Indices: 12852823--12860496 Score: 8325
Period size: 864 Copynumber: 8.7 Consensus size: 876
12852813 CCGACCGACA
** * * *
12852823 GCATTGGGGTTCCGGTGATCGGGGGAGCGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGT
1 GCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGT
* *
12852888 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAT
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
12852953 CAGTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACA-TTTTTT
131 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
12853017 CAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAA
196 CAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
12853082 AATACAAGGATCATGTCTACCAGGTTTGGGG-TCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
261 AATACAAGGATCACGTCTACCAAGTTTGGGGCT-AAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
12853146 CCCAACC-GCCAAAAGTTTTGATAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
325 CCGAACCGGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
12853210 CACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
390 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * *
12853275 AATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGCTTGCGCCTCCCGTCTCC
455 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
* * * * ** *
12853340 CTGGTCGACGTAGTGCCCACCCGCCTACCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGG
520 CTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * ** *
12853405 AGTTCATTCCCAGTCTAAGATTC-GATCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCA
585 AGTTCATTCCCAGTCTAAGA-TCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCA
* * * * * *
12853469 GA-GGGGATCC-AGCCGATCCCTGACTTGCGCGTCCCACCCCTCTGTCCGACTGAGCA-CCCGCA
649 GAGGGGGA-CCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-AGCCCGCA
* * * * *
12853531 CGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCG
711 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * *
12853596 AGGGTTGCGGCAGTACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTT-TT-----T----
776 AGGTTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCACCATGGCA
* * * *
12853651 -CATCG-GGGCACCATCGTCGGAGAACCTGATCGGCG
841 CCATCGCCGG-AGCATCGTCGGAGAACTTGATAGGCG
* * * *
12853686 GCATTGGGGTTCCGATGATCGGGGGGGCTGGGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTG
1 GCATTGGGGTTCCGACGATCGGGGGGGC--GGGGGGTGTGCACACATGATGTGTGATGGGTGCTG
12853751 GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
64 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
12853815 AGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTT
129 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
12853879 TTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGGTGAATTGTTTTGTGCATGCCAAAA
194 TTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * * *
12853944 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAGAAAAG
259 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * * * *
12854009 CCCGAATC-GTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCATGCCGTGAAACT
324 CCCGAACCGGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
12854073 TCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
12854138 AAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCTGTCTC
454 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
* * * * *
12854203 TCTGGCTGGCGTA--G-T-GCCTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
519 TCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * *
12854264 GAGTTTATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCA
584 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCA
* * ** * * *
12854329 AAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCTTTTTGGCCTGCTGAGAGCCCACACA
649 GAGGGGGA-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACA
* *
12854394 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
713 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * *
12854459 GTTTGCGACAGCAGATGCTGGGC-CTGGGCATTTTCTGGTGCCGCATTTTTCTTCACCACGACAC
778 GTTTGCGGCAGCACATGCTGGGCTC-GGGCATTTGCTGGTGCCGCATTTTTCTTCACCATGGCAC
12854523 CATCGCCGGAGCATCGTCGGAGAACTTGATAGGCG
842 CATCGCCGGAGCATCGTCGGAGAACTTGATAGGCG
* *
12854558 GCATTGGGGTTTCGACGATCGAGGGGGCGGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTG
1 GCATTGGGGTTCCGACGATCG-GGGGG-GCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTG
12854623 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
64 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
12854688 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTT
129 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
12854753 TTCAAATCGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
194 TTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
12854818 AAAATACAAGGATCACGTCTACCAAATTTGGGGCTAAAACTCGTTCCGAAAAAATTTTAAAAAAT
259 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * *
12854883 CCCAAACC-GCAAAATACTTTTCAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
324 CCCGAACCGGCAAAA-AGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
12854947 TTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * * **
12855012 GAAATATGAAGATGTGCCTAAACCCACCAACCACCCGATCGATCCACGGCTTACGCATGTCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
* *
12855077 CTCTGGCCGGTGTA--G-T-----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
518 CTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * * *
12855134 GGAGTTCATTCCCAGTGTAAGATCAGATCGGATCGAGGGTTACGGCAGCAGGATCAGCAGCACGT
583 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGC
* *** * * * * *
12855199 AGAAGGGGACACGGTTGATCCTCCGGCTTGCGCATCCTGCCCCTTTGGTCGACTGAGCA-CTCGC
648 AGAGGGGGAC-CGACCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-AGCCCGC
*
12855263 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
710 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * *
12855328 AAGGTTTGCGGCAGCTCATGCTGGGCTCGGGCATTTGCTGGTGTCGTATTTTTCTTCACCATGGC
775 GAGGTTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCACCATGGC
* * *
12855393 ACTATCGCTGGAGCATCATCGGAGAACTTGATAGGCG
840 ACCATCGCCGGAGCATCGTCGGAGAACTTGATAGGCG
*
12855430 GCATTGGGGTTCCGACGATC-----GG-GGGGGGCGTGCACACATGATGTGTGATGGGTGCTGGT
1 GCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGT
* *
12855489 ACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAATGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
12855554 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * * * *
12855619 CAAATGGTCACAAAATCTTATACATATCAAGTTATTAGGTGATTTTTTTTGTGAATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
12855684 AATACAAGGATCACGTCTACCACGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCT
261 AATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
12855749 TGAACC-GTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTC
326 CGAACCGGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
**
12855813 ACGTGAAGGCTTAAACGACCATTGTATGAATTTACAAG-CATTAAAAATGGCATTGGCATGCAGA
391 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCATGCAGA
* * * *
12855877 AATATGAAGAAGTGCCTAATCCCACCTACCACCTTATCGATCCACAGCTTGCGCATCCTGTCTCT
455 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
** *** ** **
12855942 CTGATCGGCGTAGTG--C-CTATCTAG-CCG-CATCTCGTTTCATCGGTTGGCTTAGGCATACGG
520 CTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
*** * * ** * **
12856002 AGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCGGCAATAGGATCAG-ACGCACATA
585 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCA-GCACGCA
* * * * * * * *
12856066 GAGGGGGACTTGGCCGATCCCCAGCTTGCGCATCCCGCCCTTCTGGCCGGTTGAGTGCCCACACG
649 GAGGGGGAC-CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACA
* *
12856131 CTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
713 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G-------
* * *
12856196 CCAATCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
767 ---A-C------C-----GGACCGAGGTTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGT
* * * * *
12856261 GCCACATTTTTCTT---C---G-----TCG-GGGCAGCATCGCCGGAGAACCTGATTGGCG
817 GCCGCATTTTTCTTCACCATGGCACCATCGCCGG-AGCATCGTCGGAGAACTTGATAGGCG
* * * *
12856310 GCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC-TAGATGTGCGATGGGTGCTGG
1 GCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCACACAT-GATGTGTGATGGGTGCTGG
* * * ** *
12856374 TACTTGGCCCTTATATTAGCTCCCTATCCCTCACCAAACCTCGAGAACTTGCACCCCCGTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
12856439 GCATTCGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTT
130 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
12856504 TCAAATGATCGCAAAATCTTGTACACATCGAGTTTTTAGCTGAATATTTTAGTGCATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
12856569 AAATATAAGGATCACATCTACCAAGTTTGGGG-TCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCT-AAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * *
12856633 CCCGAA-CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAATCT
324 CCCGAACCGGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* ***
12856697 TCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
12856762 AAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTGCACATTCCGTCTC
454 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
* * *
12856827 TCTGGCCGACGTAGTGCT--------CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
519 TCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
** *
12856884 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
584 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCA
* * * ** *
12856949 GAGGGGGACCCGGCCGATCCCCAGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCA-CCTGCAC
649 GAGGGGGA-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-AGCCCGCAC
*
12857013 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
712 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G------
* * * *
12857078 CCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGT
767 ---A--C------CGGA-C---C-GAGGTTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGG
* * * ** * * ** *
12857143 TGACACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
816 TGCCGCATTTTTCTTCACCATGGCACCATCGCCGGAGCATCGTCGGAGAACTTGATAGGCG
* * * * *
12857204 GCATTAGGGTTCCGACGATCAGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
1 GCATTGGGGTTCCGACGATC-GGGGGGGCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGG
* * *
12857269 TACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
12857334 GCATTTGAGAATTTATAGGTTTGTTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
130 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
12857399 TCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
12857464 AAATACAAGCATCACGTCTACCAAGTTTAGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATC
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
12857529 CCAAACC-GCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTT
325 CCGAACCGGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
12857593 CACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCACGTAGA
390 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* ** *
12857658 AATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTTTCT
455 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
* * * * * * * *
12857723 CTGGCCGACGTAGTGCCCGTCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATGCAG
520 CTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * * *
12857788 AGTTCATTCCCAGTCTAAGATCGGGCCAGATCGAGGG-TAGCGGTACCAGGATCGGCAACAAGCA
585 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTA-CGGCAGCAGGATCGGCAGCACGCA
* * * * * * * * ** *
12857852 GAGGGAGACCTGATCGATCCCTGACTTACGCATCCCACCCCTCTGGCCGGCTGAGCGGCCATACG
649 GAGGGGGACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACA
* * * ***
12857917 CTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTC
713 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGG-A-CCGGAC
* * ** * * * * ** * * ** ** *
12857982 CCA-GTCTAAGCATACGGAATTCATTCCT-AG-TC--TAATATCGAAC-CGAACCG-AGGGTTAC
774 CGAGGT-T-TGC-GGCAGCA--CA-TGCTGGGCTCGGGCAT-TTG--CTGGTGCCGCA-TTTTTC
** * * ** * * * * *
12858040 AGCAGCACAGGCTGGGCTCGGGCATGTGGTGGTGCCACATTTTTCGTCATCGGGGCAACATCATC
829 TTCA-C-CA---T-GGCAC---CAT-CGCCGGAG---CA----TCG---TCGGAG-AACTTGATA
*
12858105 GG-A
873 GGCG
* * ** * * ** * ** * **
12858108 GCATCACCGGAGAACCTGAC---C--GGCGACATTGGGGT-T-C-CGGCGATCGGGGGGGTCGGG
1 GCAT---TGGGGTTCC-GACGATCGGGGGGGC-GGGGGGTGTGCAC-AC-AT--GATGTGT-GAT
* * * * * * *** * * * * *
12858165 GGGTG-TGCGCACAT-G--ATGTACGATGGGTGCTGGTACTTGGCC-C-TTATA--TTG-G-GC-
56 GGGTGCTG-GTACTTGGCCCT-TA-TATTGG-CCCCCTA--T-CCCTCATCAAACCTCGAGAACT
* * * * *
12858219 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTATGGGTT
114 CAC-A-CCC-CCTTAAA----GAGC---------------------ATTTGAGATTTTATAGGTT
* * *
12858284 TGCTGCTAGTAGCCATTAAAGTGTTTGAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
151 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
12858349 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATTACGAGGATCACATCTG
216 TACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTA
* * * * * *
12858413 CTATGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTT
280 CCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGGCAAAAAGTTTT
* * * ** * *
12858477 GAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACACGACGGCTTAAGGGAA
345 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*** * *
12858542 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGCAATATGAAGATGTGCCAAAA
410 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
12858607 CCCACCTACCACCCTATCGATCCACAGCTTGCACATTCCGTCTCTCTGGCCGGCATAGTGCTCGC
475 CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGC
* * *
12858672 CCGCCCGCTCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGA
540 CCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * *
12858737 TTAGACCAGACCGAGGGTT-----A-C-GG-T-AGCA-CACG--GAGGGGGACCGACCGATCCTC
605 TCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGACCGATCCCC
*
12858790 GGCTTGCGCAGCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGACTTAG
670 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGACTTAG
* *
12858855 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCGACAGCACATGCTGGG
735 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCGGCAGCACATGCTGGG
* * * *
12858920 CTCGGGTATTTGCTGGTGCCACATTTTTTTTCACCACGGCACCATCGCCGGAGCATCGTCGGAGA
800 CTCGGGCATTTGCTGGTGCCGCATTTTTCTTCACCATGGCACCATCGCCGGAGCATCGTCGGAGA
*
12858985 ACTTGATAGGTG
865 ACTTGATAGGCG
*
12858997 GCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGG
1 GCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGTGTGCACACATGATGTGTGATGGGTGCTGG
*
12859062 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* ** *
12859127 GCATTTGAGATTTTACAGGTTTGCTGCTGGTAGCCATTAAAGTGTCTAAAATGGGGAC-CTTTTT
130 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTT
* * *
12859191 TTCAAATGGTCGCAAAATCTTGTACACATCGAGTTTTTAGCTGAATATTTTAGTGCATGCCAACA
194 TTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
12859256 AAAATACAAGGATCACGTCTACCAAGTTTGGGG-TCAAAACTCCTTCCGAAAAAATTTTAAAAAA
259 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCT-AAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
12859320 TCCCGAACC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
323 TCCCGAACCGGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
***
12859384 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* ** *
12859449 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATTTCGTAT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
* * * *
12859514 CGCTGGCCAGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGTCTTAGGCATAC
518 CTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* ** ** * * *
12859579 GGAGTTCATTCCTAGTCTAAGATTAGACCAGACTTAGGGTTACAGCAGCAAGATCGGTAGCACGC
583 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGC
*
12859644 AGAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGTACA
648 AGAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACA
* * *
12859709 CTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
713 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
12859774 GTTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCACCATGGCACC
778 GTTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCACCATGGCACC
*
12859839 ATCGCTGGAGCATCGTCGGAGAACTTGATAGGCG
843 ATCGCCGGAGCATCGTCGGAGAACTTGATAGGCG
*
12859873 ACATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGT
1 GCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGT
* * *
12859938 ACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTCAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
12860003 CATTTGAGATTTTACAGGTTTGCTGCCAGGAGCCGTTAAAGTGTCTGAAATGGTGACACTTTTTT
131 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
12860068 CAAATGGTCACAAAATCTTGTACACGTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * * *
12860133 AAAACAAGGATCACGTCTGCCAAATTTGGGGCTAAAACTCGTTCCGAAAAAATTTGAAAAAATAC
261 AATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *** * * * *
12860198 CAAACCATAAAAAATTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTC
326 CGAACCGGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
12860263 ATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
391 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
12860328 ATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCTACGGCTTACGCATCCCGTCTCTC
456 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTC
* * * *
12860393 TAGCCGGCGTA--G-T-----GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA
521 TGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * *
12860450 ATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGGTAGCA
586 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCA
12860497 CATGCTGGGC
Statistics
Matches: 5798, Mismatches: 774, Indels: 473
0.82 0.11 0.07
Matches are distributed among these distances:
859 2 0.00
860 98 0.02
861 146 0.03
862 6 0.00
863 196 0.03
864 1128 0.19
865 141 0.02
866 101 0.02
867 4 0.00
868 78 0.01
869 2 0.00
870 2 0.00
871 110 0.02
872 300 0.05
873 114 0.02
874 138 0.02
875 450 0.08
876 416 0.07
878 3 0.00
879 4 0.00
880 46 0.01
881 3 0.00
882 13 0.00
883 257 0.04
884 9 0.00
885 17 0.00
886 456 0.08
887 5 0.00
888 23 0.00
889 28 0.00
890 18 0.00
891 59 0.01
892 8 0.00
893 5 0.00
894 50 0.01
895 472 0.08
896 4 0.00
897 2 0.00
899 4 0.00
900 4 0.00
901 8 0.00
902 14 0.00
903 203 0.04
904 24 0.00
905 21 0.00
906 3 0.00
907 11 0.00
908 13 0.00
909 9 0.00
910 7 0.00
911 4 0.00
912 5 0.00
913 3 0.00
914 3 0.00
915 2 0.00
916 88 0.02
917 9 0.00
919 3 0.00
920 3 0.00
921 1 0.00
922 2 0.00
923 1 0.00
924 1 0.00
928 5 0.00
929 432 0.07
930 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
GCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGA
GGGGGACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACACTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTT
TGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCACCATGGCACCATC
GCCGGAGCATCGTCGGAGAACTTGATAGGCG
Found at i:12863668 original size:876 final size:871
Alignment explanation
Indices: 12860757--12865615 Score: 6252
Period size: 895 Copynumber: 5.5 Consensus size: 871
12860747 CTATTAAAGT
* * *
12860757 GTCACAAAATCTTGTACACTTCAAGTTTTTAGGTGAATTTTTTTGTGTATGCCAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * *
12860822 AGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAATATTTTAAAAAATCTC-GAAC
66 AGGATCACGTCTACCAA-TTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATC-CAGAAC
* * * *
12860886 CGCAAAAGGTTTCAAAATTCGTGAAAAATAGAAAATGAGTCGTCCTGCCATGAAACTTCACGTGA
129 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* ***
12860951 TGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
194 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * * *
12861016 AGATGTACCTAAACCCATCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCG
259 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCG
* *
12861081 GCGTAGTGCCTGCCCGCCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
324 GCGTAGTGCCCGCCCGCCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * ** * * *
12861145 CTGTCTAAGATTAGACCGGATTGAGGGTTGCGGCAGCAGGATCGATAGCACGTAGAGTGGGACTC
389 CAATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCC
* * *
12861210 GACCGATCCCAGGCCTGCGCATTTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGATCGTTTCGTG
454 GACCGATCCC-GGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * *
12861275 GGTTGAATTAGGCATACGCAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAG
518 GGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGATCACATCGGACCAAGGGTTACGGCAG
* * * * * * * * *
12861340 CACATGTTGGGCTCTGGCATGTGCTGCTGCCGTATTTTTTTTGGCCGGGGAACTATCGCCGGAGC
583 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CGGGGCACCATCGCTGGAGC
* * *
12861405 ATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-AGGGGGTCGGGGGGTGTGCGC
647 ATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGC
*
12861469 ACATGATGTGCGATGGGTGCTGGTACTT-GCCCCTATATTGGCCCCCTATCCCTCATCAAACCTC
712 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * * *
12861533 AATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAA
777 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAG
* * *
12861598 TATCTAAAATGGGGACACTTTTTTGAAATG
842 TGTCTGAAATGGGGACACTTTTTTCAAATG
12861628 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
12861693 AGGATCATGTCTACCATGTTTGGGGCC-AAAA-CACTTTCCGAAAAAATTTAAAAAAATCCCA-A
66 AGGATCACGTCTACCA-ATTTGGGGCCAAAAATC-CTTT-CAAAAAAATTTTAAAAAAT-CCAGA
** *
12861755 ACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
127 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
12861820 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
192 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
*
12861885 GAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC
257 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC
*
12861950 CGGCGTAGTG--C-CCC-CCC-GCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
322 CGGCGTAGTGCCCGCCCGCCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
12862010 CCCAGA-GTAAGATCATATCAGACCGAGGGTTACGGCAGCAGCATC-AGCAGTATGCAAAGGGGG
387 CCCA-ATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAGAGGGGG
* ** * * * ** *
12862073 ACACGGTCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGATTGAGCGCCCGCACGCTTGTTT
450 ACCCGACCGAT-CCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * ** * * * **
12862138 CGTGGGTTGACTTAGGCATACGAAGCTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTG
514 CGTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGATCACATCGGACCAAGGGTTACG
* * * *
12862203 GCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACAATTTTCTTCGTCGGGGCACCATCGAC-
579 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CGGGGCACCATCG-CT
* * ** *
12862267 GGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCG-GTAGGGCCGGGGGGG
642 GGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAG-GGGGCC--GGGGG
* *
12862331 GTGTG-GCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTAGCCCCCTATCCCTCAT
704 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
12862395 CAAACCTCGAGAACTCACACACCCTTAATGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGC
769 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGC
12862460 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
834 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
12862498 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAT-CCAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * ***
12862562 AGGATCACATCGACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAATTTAAAAAATTTGGAACC
66 AGGATCACGTCTACCAA-TTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCAGAACC
**
12862627 GCAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
130 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
12862691 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGTAGAAATATGAA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
*
12862756 GATGTGCCTAAACCCACCTACCACCCTATTGATCCACTG-CTTGCGCATCCCGTCTCTCTGGCCG
260 GATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GACTTGCGCATCCCGTCTCTCTGGCCG
* *
12862820 ACGTAGTGCCCGCCCGCCTGTCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
324 GCGTAGTGCCCGCCCGCC---CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * * * * * *
12862885 TCCCAATATAAGATTGGACCAGACCAAGCGTTACGGCAGCAAGATCTACAGCACGTAGAGGGGGA
386 TCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* * * * *
12862950 CCCGGCCGATCCCAGGCTTGCGCATCCCGCCCCTCTAGCTGGCTGAACG-CCGCACGCTCGTTTC
451 CCCGACCGATCCC-GGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
12863014 GTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCACATCGGACCAAGGGTTACGG
515 GTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGATCACATCGGACCAAGGGTTACGG
* *
12863079 CAGCACAAT-CTAGGG-TCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCT
580 CAGCAC-ATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCGGGGCACCATCGCT
* * *
12863142 AGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTG
642 GGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTG
* **
12863207 TGCTCACATGATGTGCGATGGGTGCTGGTACTTGGTACTTATATTGGCCCCCTATCCCTCATCAA
707 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
12863272 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAATAGCCAT
772 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAT
*
12863337 TAAAGTGTCTGAAATGGGAACACTTTTTTCAAATG
837 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
12863372 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
12863437 AGGATCACGTCTACCACATTTTGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCAGAACC
66 AGGATCACGTCTACCA-ATTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCAGAACC
* * *
12863502 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACATGCA
130 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
** * * * *
12863567 GGCTTAAATGACCATTGTATGAATTTACATGCGATAAAAATGGCATTGGCACGCAAAAATATGAA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* *
12863632 AATGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGG
260 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGG
** * *
12863697 TATAGT----GCCCGCCC-GCCCGCTCGTTTTGTCGGTTGGCTTTGGCATACGGAGTTCATTCCC
325 CGTAGTGCCCGCCCGCCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * *
12863757 AATCTAAGACCAGATCGGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGTAGAGGGGGACCCG
390 AATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCG
* * * * * * * *
12863822 ACCAATCTCCGGTTTGTGCATGTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTTGTCG
455 ACCGATC-CCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
12863887 GTTGATTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATACGGAGTTCCTTCCCAGTATAAGAT
519 GTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAG-AT-C--A---------C--------AT
* *
12863952 CGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCTGCATTTTTC
563 CGGACC--A---AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
*
12864017 TTCGCTAGGGCACCATCG-TCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
623 TTCGC-GGGGCACCATCGCT-GGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* *
12864081 GGTCG-GGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
686 GATCGAGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
12864145 TTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
750 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
12864210 CAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
815 CAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
12864267 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
12864332 AGGATCACGTCTACCACATTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCAGAACC
66 AGGATCACGTCTACCA-ATTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCAGAACC
* * * *
12864397 GTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTGGCCATTAAACTTCACGTGAA
130 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
** * * * *
12864462 GGCTTAAATGACCATTGTATGAATTTACATGCAATAAAAATGGAATTGGCATGCAAAAATATGAA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* *
12864527 AATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
260 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGG
* *
12864592 CGTAGTGCCCGCCCG---T--TCGCTCGTTTTGTCGGTTGGCTTTA-GCATACGGAGTTCATTCC
325 CGTAGTGCCCGCCCGCCCTGCCCGCTCGTTTCGTCGGTTGGC-TTAGGCATACGGAGTTCATTCC
* * * * * **
12864651 CAGTCTAAGACCAGATCAGACCGAGGGTTGCGGTAGTAGGATTGGTAGCACGTAGAGGGGGACCC
389 CAATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCC
* * * * * * * * *
12864716 AACCAATCTTCGGCTTGTGCATGTTGCCCCTCTAGCCGGCTGAGCGCCCGTACGCTCGTTTCGTT
454 GACCGATC-CCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
12864781 GGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTATAAGA
518 GGTTGACTTAGGCATACGCAGTTCATTCCCAGTCT----A-A--GA--TCA----C--------A
* *
12864846 TCGGACCGGACCGAGAGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT
562 TCGGACC--A---AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
12864911 CTTCGCTAGGGCACCATCGCTGGAGCATCACCGAAGAACCTGACTGGCGGCATTGGGGTTCCGAT
622 CTTCGC-GGGGCACCATCGCTGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* *
12864976 GATCGA-GGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
686 GATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
12865040 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACTCGCTTAAAGAGCATTTGAGATTTTAC
751 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
12865105 AGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATG
816 AGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
12865161 GTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * * *
12865225 GGGATCACATCTACCATGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAAC
66 AGGATCACGTCTACCA-ATTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATC-CAGAAC
* *
12865289 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGCGA
129 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
12865354 AGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
194 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
12865419 AGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGACTTGCACATCCCGTCTCTCTGGCCG
259 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
12865484 ACGTAGAGCCTGCCCGCCCGTCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
324 GCGTAGTGCCCGCCCGCCC-T--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * *
12865549 TCTCAGTCTAAGATCAGATCGGACCGAGGGTTGCTACAGCAGGATC-AGCAACACGCAGAGGGGG
386 TCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAGAGGGGG
12865613 ACC
450 ACC
12865616 ATCGCCGGAG
Statistics
Matches: 3548, Mismatches: 338, Indels: 174
0.87 0.08 0.04
Matches are distributed among these distances:
866 1 0.00
867 289 0.08
868 323 0.09
869 147 0.04
870 193 0.05
871 297 0.08
872 10 0.00
873 11 0.00
874 202 0.06
875 248 0.07
876 303 0.09
877 1 0.00
882 1 0.00
890 8 0.00
892 1 0.00
893 288 0.08
894 200 0.06
895 918 0.26
896 3 0.00
897 1 0.00
899 6 0.00
900 5 0.00
901 89 0.03
902 2 0.00
903 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (871 bp):
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAATTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCAGAACCG
CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
ATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGA
CCGATCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGATCACATCGGACCAAGGGTTACGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCGGGGCACCATCGCTGGAGCATCA
TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATG
Found at i:12863926 original size:26 final size:26
Alignment explanation
Indices: 12863897--12863949 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12863887 GTTGATTTAG
*
12863897 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTATAA
* *
12863923 GCATACGGAGTTCCTTCCCAGTATAA
1 GCATACGCAGTTCATTCCCAGTATAA
12863949 G
1 G
12863950 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTATAA
Found at i:12864844 original size:26 final size:26
Alignment explanation
Indices: 12864792--12864844 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12864782 GTTGATTTAG
*
12864792 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
12864818 GCATACGGAGTTCATTCCCATTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
12864844 G
1 G
12864845 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:12866645 original size:711 final size:705
Alignment explanation
Indices: 12864818--12866975 Score: 2918
Period size: 711 Copynumber: 3.1 Consensus size: 705
12864808 CCCAGTCTAA
* * * *
12864818 GCATACGGAGTTCATTCCCATTATAAGATCGGACCGGACCGAGAGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-CGGCAGCACATGCTGGG
* * * *
12864883 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCTAGGGCACCATCGCTGGAGCATCACCGAAGA
65 CTCGGGCATGTGCTGGTGC-G-AATTTTCTTCACTGGGGCACCATCGCTGGAGCATCACCGGAGA
* * * *
12864948 ACCTGACTGGCGGCATTGGGGTTCCGATGATCGAGGGGCTGGGGGGTGTGCGCACATGATGTGTG
128 ACCTGACAGGCAGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTG
*
12865013 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
12865077 CTCGCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATG
258 CTC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12865142 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAA-GGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12865206 GCATACCAACAAAAATACAGGGATCACATCTACCATGTTTAGGGCCAAAACTCCTTCCAAAAAAA
386 GCATACCAACAAAAATACATGGATCACATCTACCAAGTTT-GGGCCAAAAATCCTTCCAAAAAAA
*
12865271 TTTTAAAAAATCTCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
450 TTTTAAAAAATCTCGAACC-CAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12865335 GCCATTAAACTTCACGCGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCA
*
12865400 TTGGCATGCAGAAATATGAAGATGTGCCTAAA-TCCACCTACCACCCTATCGATCCATGACTTGC
579 TTGGCATGCAGAAATATGAAGATGTGCCTAAACT-CACCTACCACCCTATCGATCCATGGCTTGC
* * *
12865464 ACATCCCGTCTCTCTGGCCGACGTAGAGCCTGCCCGCCCGTCCGCTCGCTCGTTTCATCGGTTGG
643 GCATCCCGTCTCTCTGG-CGACGT--AG--TGCCCGCCCGTCCGCTCGC-C-ATTCGTCGGTTGG
12865529 CTTAG
701 CTTAG
* * *
12865534 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAGGGTT--GC--TACA------G-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCGGCAGCACATGCTGGGC
* * ** * ** * * ** *
12865588 -CAGG-A--T-C---AGC-AA--CAC-GCAGAGGGGGACCATCGCCGGAGCATCGTCGGAGAACT
66 TCGGGCATGTGCTGGTGCGAATTTTCTTCACTGGGGCACCATCGCTGGAGCATCACCGGAGAACC
* * * *
12865641 TGATAGGCAGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGGTGTGCACACATGATGTGTGAT
131 TGACAGGCAGCATTGGGGTTCCGATGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTGTGAT
* *
12865706 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCT
*
12865771 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
12865836 ACACTTTTTTCAAAAGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCAGAAGTTTTTTGTGCA
325 ACACTTTTTTC-AAAGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * *
12865901 TGCCAACAAAAATACGTGGATCACGTCTACCAAGTTTGGCACCAAAAGTCATTCCAAAAAAATTT
389 TACCAACAAAAATACATGGATCACATCTACCAAGTTTGG-GCCAAAAATCCTTCCAAAAAAATTT
** * *
12865966 TAAAAAATCTCGAACCTTAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
453 TAAAAAATCTCGAACCCAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
12866031 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTGG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGG
* *
12866096 CACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTACGCATC
583 CATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTGCGCATC
** *
12866161 CCGTCTCTCTGGTCGACGTAGTGCCCGCCCAACCGCTCG-C-TTCGTCGGTTCGCTTAG
648 CCGTCTCTCTGG-CGACGTAGTGCCCGCCCGTCCGCTCGCCATTCGTCGGTTGGCTTAG
* *
12866218 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-CGGCAGCACATGCTGGG
*
12866283 CTCGGGCATGTGCTGGTGTCGTAATTTTCTTCACTGGGGCACCATCGCTGGAACATCACCGGAGA
65 CTCGGGCATGTGCTGGTG-CG-AATTTTCTTCACTGGGGCACCATCGCTGGAGCATCACCGGAGA
* * * *
12866348 ACCTGACCGACAGCATTGGGGTTTCGGTGATCGGGAGGGCCGGGGGAGTGTGCGCACATGATGTG
128 ACCTGACAGGCAGCATTGGGGTTCCGATGATCGGG-GGGCCGGGGG-GTGTGCGCACATGATGTG
* * * * *
12866413 CGATGCGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCAC
191 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12866478 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAT
256 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12866543 GGGGACACTTTTTTCGAAAGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTC-AAAGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12866608 TGCA-ATCCAAAAAAAATACATGGATCACATCTACCAAGTTTGGGGCAAAAATCCTTCCGAAAAA
385 TGCATA-CCAACAAAAATACATGGATCACATCTACCAAGTTTGGGCCAAAAATCCTTCCAAAAAA
* * * *
12866672 ATTTTAAAAAATCCCGAACCACAAAAAAGTTTCAAAAATCATGGAAAATAGATAACAAGTCGTCT
449 ATTTTAAAAAATCTCGAACC-CAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
12866737 TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGC
* * *
12866802 ATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
578 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTGC
* * *
12866867 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGTCTGCTCGCCCACTCGTTTTATCGGTTGG
643 GCATCCCGTCTCTCTGGCGA-CGTAGTGCCCGCCCGTCCGCTCG-CCATTCG-----TCGGTTGG
12866932 CTTAG
701 CTTAG
*
12866937 GCATACGGCGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
12866976 TGAGTGTTGT
Statistics
Matches: 1258, Mismatches: 138, Indels: 89
0.85 0.09 0.06
Matches are distributed among these distances:
684 58 0.05
686 1 0.00
687 2 0.00
688 16 0.01
689 3 0.00
690 60 0.05
691 182 0.14
692 280 0.22
693 2 0.00
695 1 0.00
696 2 0.00
697 3 0.00
698 1 0.00
699 1 0.00
700 2 0.00
701 1 0.00
702 1 0.00
703 3 0.00
704 1 0.00
705 2 0.00
707 2 0.00
709 1 0.00
710 97 0.08
711 440 0.35
713 3 0.00
714 3 0.00
716 41 0.03
719 49 0.04
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCGAATTTTCTTCACTGGGGCACCATCGCTGGAGCATCACCGGAGAACC
TGACAGGCAGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAAGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATA
CCAACAAAAATACATGGATCACATCTACCAAGTTTGGGCCAAAAATCCTTCCAAAAAAATTTTAA
AAAATCTCGAACCCAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCAT
GCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
TCTCTCTGGCGACGTAGTGCCCGCCCGTCCGCTCGCCATTCGTCGGTTGGCTTAG
Found at i:12867129 original size:26 final size:26
Alignment explanation
Indices: 12867093--12867148 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
12867083 TGGGTTGACT
12867093 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
12867119 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
12867145 TAAG
1 TAAG
12867149 ATCAGACCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCCCAGTC
Found at i:12868033 original size:26 final size:26
Alignment explanation
Indices: 12867997--12868049 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12867987 GTTGACTTAG
12867997 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12868023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12868049 G
1 G
12868050 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12868586 original size:899 final size:896
Alignment explanation
Indices: 12866218--12868782 Score: 3717
Period size: 899 Copynumber: 2.8 Consensus size: 896
12866208 GTTCGCTTAG
*
12866218 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* * * * *
12866283 CTCGGGCATGTGCTGGTGTCGTA-ATTTTCTTCACTGGGGCACCATCGCTGGAACATCACCGGAG
66 CTCGGGCATGTGCTGGTGTCGCATA-TTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * ** *
12866347 AACCTGACCGACAGCATTGGGGTTTCGGTGATCGGGAGGGCCGGGGGAGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGT
* * *
12866412 GCGATGCGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC-CA
*
12866477 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAA
258 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12866542 TGGGGACACTTTTTTCGAAA-GGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 TGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12866606 TGTGCAAT-CCAAAAAAAATACATGGATCACATCTACCAAGTTTGGGG-CAAAAATCCTTCCGAA
387 TGTGC-ATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* ** * * *
12866669 AAAATTTTAAAAAATCCCGAACCACAAAAAAGTTTCAAAAATCATGGAAAATAGATAACAAGTCG
450 AAAATTTTAAAAAATCCCAAACC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
12866734 TCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGTCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12866799 GGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
12866864 TGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGTCTGCTCGCCCACTCGTTTTATCGGT
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--C-CGCCC-GTCGTTTCATAGGT
* * * * * ** *
12866929 TGGCTTAGGCATACGGCGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGTGTTGTGGTAGCAA
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAA
* * * *
12866994 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCCCTGGCCGA
769 GATCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCCCTCGCCGA
* * *
12867059 CTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAAGCATATGGAGTTCATTCCCAGTCTAA
834 CTGAGCGCCCACGCGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
12867122 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* * * * * * * *
12867187 CTCGGTCATGTGCTGGTGCCACTTTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGTCGCATATTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
12867252 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGTTGTCCGCACATCATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C-CGGGGGG-TGTGCGCACATGATG
* *
12867317 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC-C
* * *
12867382 ACACC-CCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTACCTGTAGCCATTAAAGTG-CATGA
257 ACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGA
* * * *
12867445 AATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTTCACCTCGAGTTTTTAGGTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
12867510 TTGTGCATGCCAAAAACAATGCAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTTCGAA
386 TTGTGCATGCCAAAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* *
12867575 AAAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12867640 CTCGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * * * *
12867705 GCATTGGCACATAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATTGATCCATGACTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
12867770 GCACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGTACGTTTCATAGGTTGGCT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGT-CGTTTCATAGGTTGGCT
* * * * * * *
12867835 TTGGCATACGGAGTTCATTCTCAATCTAAGATTGGACCAGACCAAGGGTTACGATAGTAGGATCG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAAGATCG
** * * *
12867900 ACAGCACGCAAAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTCGCCGGCTGAG
774 ACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCCCTCGCCGACTGAG
*
12867965 CGCCCACGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CGCCCACGCGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
* *
12868023 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* * *
12868088 CTCGGGCATGTGCTGGTGTCGCATATTTCTCCGCCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATATTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
12868153 GCCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGCCCAGAGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CC-GGGGGGTGTGCGCACATGATGT
* *
12868218 GCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CAC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCAC
* *
12868282 TCCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12868347 GGAGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12868412 TGCATGCCAACAAATATCCAAGGATCACGTCAACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
389 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
*
12868477 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
453 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12868542 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12868607 TTGGCATGCAGAAATATGAAGATGTGCCTAAACGCACATACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12868672 CATCCC-TCTCTCTGCCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCA-GTTGGCTTA
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-TCGTTTCAT-AGGTTGGCTTA
* *
12868735 GGCATACAGAGTTCATTCCCAGTCTAAGGTCGGACCAGACCGAGGGTT
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
12868783 GCAGCAGCAC
Statistics
Matches: 1474, Mismatches: 171, Indels: 38
0.88 0.10 0.02
Matches are distributed among these distances:
898 95 0.06
899 357 0.24
900 76 0.05
901 336 0.23
902 1 0.00
904 156 0.11
905 335 0.23
906 118 0.08
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATATTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCACAC
CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCGTTTCATAGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAAGATCGACAGCAC
GCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCCCTCGCCGACTGAGCGCCCAC
GCGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12869645 original size:26 final size:26
Alignment explanation
Indices: 12869615--12869664 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12869605 GTTGACTTAG
12869615 GCATATGGAGTTCA-TTCCTAGTCTAC
1 GCATATGGAGTTCATTTCC-AGTCTAC
12869641 GCATATGGAGTTCATTTCCAGTCT
1 GCATATGGAGTTCATTTCCAGTCT
12869665 CAGATCGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
GCATATGGAGTTCATTTCCAGTCTAC
Found at i:12870506 original size:903 final size:900
Alignment explanation
Indices: 12868736--12870968 Score: 3071
Period size: 903 Copynumber: 2.5 Consensus size: 900
12868726 GTTGGCTTAG
* *
12868736 GCATACAGAGTTCATTCCCAGTCTAAGGTCGGACC-AGACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCAGCAGCACATGCTGG
* * * *
12868800 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGTAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
12868865 AACCTGACCGACGGTGTTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTTGTGCTCACATCATG
129 AACCTGACCGACGGTATTGGGGTTCAGACGATCGGGGGGG-CAGGGGGGTT-TGCGCACATGATG
*
12868930 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
12868995 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTGTAGCCATTAAAGTGTCTGAA
257 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12869060 ATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
12869125 TGTGCATGCCAACAAATATCCAAGGATCATGTCAACCAAGTTTAGGGCCAAAAATTCTTCCGAAA
386 TGTGCATGCCAACAAA-ATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAA
*
12869190 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTT
450 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12869255 TTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12869320 CATTGGCATGCAGAAATTTGAAGGTGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTA
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGACTTA
** * * ** * * *
12869385 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCCCACCCACCCGCTCGTTTCGTCGATTG
645 CGCATCCCAACTCTCCGGCCGACGTAGTAACAGCCCACCCACCCACCCGCTCATTTCATCGATTG
* * * *
12869450 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGAAATAGACCGAGGGTGGCGGCAGCAGGT
710 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTCAAATAGACCGAAGGTGGCGGCAGCAAGA
* ** * ** * * * * * *
12869515 TTGGTATCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCT
775 TCGACAGCACCTAGAGGGGGACCCGACCGATCCCCGACTTACGCAACCCGCCCCTCTGGCCGACT
** * * ** * *
12869580 GAGGGCCCTTATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAC
840 GAGGGCCCGCATGCTCATTTCATGGGTTGACTTAGGCAGACAGAGTTCATTCCCAGTCTAA
* * * *
12869641 GCATATGGAGTTCATTTCCAGTCTCAGATCGGACCGAACAGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCACATGCTGGG
* * *
12869706 CTTGGGCTTGTGCTGGTGCCATATTTTTCTTCGTCGGGCAACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGC-ACCATCGCCGGAGCATCGCCGGAGA
* * * *
12869771 ACCTGACCGAAGGCATTGGGGTTCTGACGATTGGGGGGGCTAGGGGGGTTTGCGCACATGATGTG
130 ACCTGACCGACGGTATTGGGGTTCAGACGATCGGGGGGGC-AGGGGGGTTTGCGCACATGATGTG
*
12869836 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
12869901 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACG
259 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * ** *
12869966 GGGACACTTTTTTCAATTGGTCACAAAATCTTATTCACTTCAAATTTTTAGCCAAAATTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12870031 GCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTT-GATGCCAAAACTCCTTCCGAAACA
389 GCATGCCAACAAAA-TACAAGGATCACGTCTACCAAGTTTAG-GGCCAAAAATCCTTCCGAAAAA
*** * *
12870095 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
452 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12870160 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12870225 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCACGACTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGACTTACG
* * * * *
12870290 CATCCCAACTCTCCGGCCGACGTAGTAACTGCCCACCCACCCGCCCGTTCATTTCATCGGTTTGC
647 CATCCCAACTCTCCGGCCGACGTAGTAACAGCCCACCCACCCACCCGCTCATTTCATCGATTGGC
* * ** * *
12870355 TTAGTCATAC-AGAGTTCATTCCCAGTCTAAGA-TCATATCAGACTTAAGGTTGCGGTAGCAAGA
712 TTAGGCATACGA-AGTTCATTCCCAGTCTAAGATTCAAAT-AGACCGAAGGTGGCGGCAGCAAGA
** *
12870418 TCGACAGCACCTAGAGGGGGACCCGATTGATCCCCGACTTACGCAACCCGCCCTTCTGGCCGACT
775 TCGACAGCACCTAGAGGGGGACCCGACCGATCCCCGACTTACGCAACCCGCCCCTCTGGCCGACT
* *
12870483 GAGTGCCCGCATGCTCATTTCATGGGTTGACTTAGGTAGACAGAGTTCATTCCCAGTCTAA
840 GAGGGCCCGCATGCTCATTTCATGGGTTGACTTAGGCAGACAGAGTTCATTCCCAGTCTAA
* ** * * *
12870544 GCATACGGAGTTCATTCCCAGTATAAGATCATACCGGACCGAGGGTTAC-GACAACACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAG-CAGCACATGCTGG
* * * *
12870608 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGTACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGCACCATCGCCGGAGCATCGCCGGAG
* * * **
12870673 AACCTGACC-AGCGGTATTGGGGTTCAGGCGATCAGGGGGGCCGAGGGGGTACGCGCACATGATG
129 AACCTGACCGA-CGGTATTGGGGTTCAGACGATCGGGGGGGCAG-GGGGGTTTGCGCACATGATG
* * *
12870737 TGCGATGGGTGCTGGTACCTGGCCCTTATATT-GTCCCCTATCCCTCATCAAACCTTGAGAGCTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
12870801 ACACCCTCTTAAA-ATGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 ACACCC-CTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12870865 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGA-ACATTTCGAGTTTTTAGCTGATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-ATACACTTCGAGTTTTTAGCTGAATTTT
12870929 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
384 TTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCA
12870969 TAAAAAGTTT
Statistics
Matches: 1166, Mismatches: 147, Indels: 32
0.87 0.11 0.02
Matches are distributed among these distances:
902 46 0.04
903 875 0.75
904 91 0.08
905 153 0.13
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCGACGGTATTGGGGTTCAGACGATCGGGGGGGCAGGGGGGTTTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTT
TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGACTTACGCATC
CCAACTCTCCGGCCGACGTAGTAACAGCCCACCCACCCACCCGCTCATTTCATCGATTGGCTTAG
GCATACGAAGTTCATTCCCAGTCTAAGATTCAAATAGACCGAAGGTGGCGGCAGCAAGATCGACA
GCACCTAGAGGGGGACCCGACCGATCCCCGACTTACGCAACCCGCCCCTCTGGCCGACTGAGGGC
CCGCATGCTCATTTCATGGGTTGACTTAGGCAGACAGAGTTCATTCCCAGTCTAA
Found at i:12872112 original size:26 final size:26
Alignment explanation
Indices: 12872076--12872126 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12872066 TTGACTTAGG
* *
12872076 CATACGGAGTTCATTCCCTGTCTAAT
1 CATACGAAGTTCATTCCCAGTCTAAT
12872102 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
12872127 GATTGGACGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAT
Found at i:12873711 original size:26 final size:26
Alignment explanation
Indices: 12873682--12873754 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
12873672 GACTTAGGCT
12873682 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
12873708 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
12873734 TACGGAGTTCATTCCCAGTCT
1 TACGGAGTTCATTCCCAGTCT
12873755 CAGATCGAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12874631 original size:26 final size:26
Alignment explanation
Indices: 12874601--12874653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12874591 GTTGACTTAG
* * *
12874601 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
12874627 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
12874653 G
1 G
12874654 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:12876224 original size:26 final size:26
Alignment explanation
Indices: 12876188--12876284 Score: 176
Period size: 26 Copynumber: 3.7 Consensus size: 26
12876178 AGGCAAACGA
12876188 AGTTCATTCCCAGTCTAAGCATACGG
1 AGTTCATTCCCAGTCTAAGCATACGG
*
12876214 AGTTCATTCCCAGTCTAAGCATACGA
1 AGTTCATTCCCAGTCTAAGCATACGG
12876240 AGTTCATTCCCAGTCTAAGCATACGG
1 AGTTCATTCCCAGTCTAAGCATACGG
*
12876266 AGTTCATTCGCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
12876285 ATCGGACCGG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACGG
Found at i:12877164 original size:26 final size:26
Alignment explanation
Indices: 12877128--12877180 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12877118 GTTGACTTAG
12877128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12877154 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12877180 G
1 G
12877181 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12877963 original size:896 final size:895
Alignment explanation
Indices: 12876232--12879628 Score: 4220
Period size: 896 Copynumber: 3.9 Consensus size: 895
12876222 CCCAGTCTAA
* * *
12876232 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCGGACCGGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* *
12876297 CGAGGGTTGCGACAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCT-CGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGG
* **
12876362 CACCATCGCTGGAGCATCATCGGAGAACCTGACCGGCAGCATTATGGTTCTGACGATCGGGGGGG
130 CACCATCGCGGGAGCATCATCGGAGAACCTGACCGGCAGCATTGGGGTTCTGACGATCGGGGGGG
*
12876427 CCGGGGGGTTGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCGA
195 CCGAGGGGTTGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCGA
*
12876492 TCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTAAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTAAGATTTTACAAGTTTGCTG
* * * *
12876557 CCAGTAGTCATTACAGTGTCTGAAATAGGGTCACTTTTTGCAAATGGTCACAAAATCATGTATAC
325 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTGCAAATGGTCACAAAATCTTGTATAC
* * *
12876622 TTCAAGTTTTTAGCTGATTTTTTTTGTGCATGCCAA-AAAAAATACGAGGATCACGTCTACCATG
390 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAA-ACAAGGATCACGTCTACCAAG
* * **
12876686 ATTCAGACCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
454 TTTCAGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT
* *
12876751 CGTGAAAAATAGAAAACGAGTCATCTTGCCCTCG-AACTTCATGTGAAGGCTTAAGGGACCATTG
519 CGTGAAAAATAGAAAACGAGTCATCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
12876815 TATGACTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAC
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAC
*
12876880 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCC
648 CTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCC
* *
12876945 CGCTTGTTTCGTCAGTTGGCTTTGGCACACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCC
713 CGCTTGTTTCATCAGTTGGCTTAGGCACACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCC
* *
12877010 AGGGTTGCAGCAGTAGAATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGACATGCCAATC
778 AGGGTTGCAGCAGAAGAATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACATGCCAATC
12877075 CCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
843 CCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
12877128 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* *
12877193 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGACATGTGCTAGTGCCTCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTGCCTCATTTTTCTTCGTCGGGG
* *
12877258 CACCATCGTC-GGAGCATCATCGGAGAACCTGACCGGCAGCATTGTGGTTCTGGCGATCGGGGGG
130 CACCATCG-CGGGAGCATCATCGGAGAACCTGACCGGCAGCATTGGGGTTCTGACGATCGGGGGG
*
12877322 GCCGAGGGGTTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCG
194 GCCGAGGGGTTGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCG
12877387 ATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTAAGATTTTACAAGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTAAGATTTTACAAGTTTGCT
* * *
12877452 GCCAGTAGTCATTACAGTGTCTGAAATAGGGTCACTTTTTGCAAATGGTCACAAAATCTTGTATA
324 GCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTGCAAATGGTCACAAAATCTTGTATA
* ** *
12877517 CTTCAAGTTTTTAGCTGATTTTTTTTAGTGCATGCCAA-AAAAAAATGAGGATCACGTCTACCAT
389 CTTCAAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAA
*
12877581 GTTTCAGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
453 GTTTCAGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAA
* * *
12877646 TCGTGAAAAATTA-AAAACGAGTCATCTTGCCCTGGAACTTCATGTGAAGGCTTAAGGGACCATT
518 TCGTGAAAAA-TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
12877710 GTATGACTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCA
582 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCA
* *
12877775 CCTACCACCCTATTGATCCATGGCTTGCACATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGC
647 CCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGC
* * *
12877840 CCGCTTGTTTCGTCAGTTGGCTTAGGCACACGGAGTTCATTCCCAGCCTAAGATTGGACCGGACC
712 CCGCTTGTTTCATCAGTTGGCTTAGGCACACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACC
* *
12877905 CAGGGTTGCAGCAGGAGAATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGACATGCCAAT
777 CAGGGTTGCAGCAGAAGAATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACATGCCAAT
12877970 CCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
842 CCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
12878024 GCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATCGAACTGGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* *
12878089 TGAGGGTTGCGGCAGCACATGCTGGGCTCGAACATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCC-TCATTTTTCTTCGTCGGG
* * * * *
12878153 GCACCATTGCCGGAGCATC-GCTGGAGAACCTGACCAGCGGCATTGGGGTTCTGACGATCGGGGG
129 GCACCATCGCGGGAGCATCATC-GGAGAACCTGACCGGCAGCATTGGGGTTCTGACGATCGGGGG
* * *
12878217 GGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGTCCC
193 GGCCGA-GGGGTTGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCC
* * * * * *
12878282 CTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTA
257 CGATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTAAGATTTTACAAGTTTG
* * *
12878346 CTGCCAATAGCCATTAAATTGTCTGAAATGGGGACACTTTTCT-CAAATGGTCACAAAATCTTGT
322 CTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT-TGCAAATGGTCACAAAATCTTGT
* * * *
12878410 AGACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACC
386 ATACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACC
** ** * * *
12878474 AAGTTTGGGGGCAAAACTCCTTTCGAAAAAAATTTTAAAAAATCCCAAACCTCAAAAATTTTCAA
451 AAGTTTCAGACCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAA
*
12878539 AAAT-GATGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACC
515 AAATCG-TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
12878603 ATTGTATAAATTTACAAG-CAT-AAAA----A-TGGCA--C-------T---G--G-------AC
579 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAAC
* * * * * *
12878640 CCACCTACCACCCTATCGATCCACGGCTTACGCAACCCGTCTTTCTAGCCGGCGTAGT-------
644 CCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTATGGCCGGCGTAGTGCCCGCC
* * * * *
12878698 -GCCCGCTTGTTTCATCAATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAAT-GGACCG
709 CGCCCGCTTGTTTCATCAGTTGGCTTAGGCACACGGAGTTCATTCCCAGCCTAAG-ATCGGACCA
* * * * * * * *
12878761 GACCGAGGGTTGCAACAGAAG-ATCAACAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTG-
773 GACCCAGGGTTGCAGCAGAAGAATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACATGC
* * * * * * * *
12878824 CACATTCTGCCCTTCTAGCCGGCTGAGCGCCCGTACGCTCG-TTCGTGGGTTGACTTTG
838 CA-ATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12878882 GGATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TCT--GATC--A---GAC
1 GCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
** * * * * *
12878921 CGAGGGTTATGGTAGCACATGCTGGGCACATGG-ATGTG-TTGTGCCACATTTTTCTTCATCGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTC--GGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGG
* * * * * *
12878984 GCACCATCGCGGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTT-TCGACGATTGGGGT
129 GCACCATCGCGGGAGCATCATCGGAGAACCTGACCGGCAGCATTGGGGTTCT-GACGATCGGGGG
** * * * *
12879048 GG-TAAGGGGTGGTGTGTGCACATGATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCC
193 GGCCGAGGGGT--TGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
* * * * *
12879112 TCTATCCCTCATCAAACC-CTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
256 CCGATCCCTCATCAAACCTC-GAGAACTCACACCCACTTAAAGAGCATTTAAGATTTTACAAGTT
* * * * * *
12879176 TGCTTCTAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTG
320 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTGCAAATGGTCACAAAATCTTG
* ** ** * *
12879241 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTAAATGCCAACAAAAATACAAGGGTCACGTCTAC
385 TATACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTAC
* * * * *
12879306 CAAG-TTCGGGGCCAAAACTCCTTTCG----------AAAAAATCCCAAACCGTAAAAAGTTTCG
450 CAAGTTTC-AGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
* * ** * *
12879360 AAAGTCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACA
514 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
12879425 ATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
579 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAAC
* * * * * *
12879490 CCACCTACGACCCCATCGATCCACGGCTTACGCATC-TCACCG-GTGTAGTGGCC-AC---CTGC
644 CCACCTACCACCCTATCGATCCACGGCTT--GCA-CATC-CCGTCTCTA-TGGCCGGCGTAGTGC
* * * * * *
12879549 CTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
704 CCGCCCGCCCGCTTGTTTCATCAGTTGGCTTAGGCACACGGAGTTCATTCCCAGCCTAAGATCGG
*
12879614 ACCAGACCGAGGGTT
769 ACCAGACCCAGGGTT
12879629 ACGACAGCAC
Statistics
Matches: 2243, Mismatches: 186, Indels: 183
0.86 0.07 0.07
Matches are distributed among these distances:
822 97 0.04
823 3 0.00
824 4 0.00
828 1 0.00
829 9 0.00
830 3 0.00
831 180 0.08
832 101 0.05
833 70 0.03
834 1 0.00
835 1 0.00
837 4 0.00
838 1 0.00
839 3 0.00
840 1 0.00
841 1 0.00
843 1 0.00
849 3 0.00
850 29 0.01
852 7 0.00
853 9 0.00
856 3 0.00
857 65 0.03
858 37 0.02
859 66 0.03
860 73 0.03
861 2 0.00
868 52 0.02
875 1 0.00
877 1 0.00
880 1 0.00
887 1 0.00
889 5 0.00
890 1 0.00
894 15 0.01
895 68 0.03
896 1193 0.53
897 130 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGC
ACCATCGCGGGAGCATCATCGGAGAACCTGACCGGCAGCATTGGGGTTCTGACGATCGGGGGGGC
CGAGGGGTTGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCGAT
CCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTGCAAATGGTCACAAAATCTTGTATACT
TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTT
TCAGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCCCGC
TTGTTTCATCAGTTGGCTTAGGCACACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCCAGG
GTTGCAGCAGAAGAATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACATGCCAATCCCG
CCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12880208 original size:369 final size:371
Alignment explanation
Indices: 12879546--12880244 Score: 1007
Period size: 369 Copynumber: 1.9 Consensus size: 371
12879536 AGTGGCCACC
* * *
12879546 TGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 TGCCCGCCCACCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
12879611 CGAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTGAGAAATGTGCTGGTGCCGTATTTTTC
66 CGAACCAGACCAAGGGTTACGACAGCACATGCTGGGCTGAGAAATGTGCTAGTGCCGCATTTTTC
* * * * * *
12879676 TTCGTCGGGGCACCATCGCTGGAGCATCACCAGAGAACTTGACCGGAGGCATTGCGGTTTCGACG
131 TTCATCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCAGAGGAATTGCGGTTCCGACG
* *
12879741 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGATACTTGGCCCTTATAT
196 ATCGGGGGGGCCGAGGGGGTGTGCGCACAAGATGTACGATGGGTGCTGATACTTGGCCCTTATAT
* *
12879806 TGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTAC
261 TGGCCCCCTATTCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
12879871 AGGTTCGATCCACGGCTTACACATCCTGCCTCTTTGGGCGACATAG
326 AGGTTCGATCCACGGCTTACACATCCTGCCTCTTTGGGCGACATAG
*
12879917 TGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 TGCCCGCCCACCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** * * ** *
12879982 CGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCG-GGCATGTGCTAGTGTCGCA-TTTT
66 CGAACCAGACCAAGGGTTACGACAGCACATGCTGGGCT-GAGAAATGTGCTAGTGCCGCATTTTT
* * ** *
12880045 CTTCATCGGGGCACCATTGCCGGAGCATCGCTGGAGAACCTGACCAGCGGAATTTG-GGTTCC-A
130 CTTCATCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCAGAGGAA-TTGCGGTTCCGA
** *
12880108 GCGATC-GGGGGGCCGAGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
194 -CGATCGGGGGGGCCGAGGGGGTGTGCGCACAAGATGTACGATGGGTGCTGATACTTGGCCCTTA
12880172 TATT-GCTCCCCTA-TCCGTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
258 TATTGGC-CCCCTATTCC-TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
12880235 TTTACAGGTT
321 TTTACAGGTT
12880245 TACTGCCAGT
Statistics
Matches: 290, Mismatches: 33, Indels: 12
0.87 0.10 0.04
Matches are distributed among these distances:
368 5 0.02
369 118 0.41
370 56 0.19
371 110 0.38
372 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (371 bp):
TGCCCGCCCACCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CGAACCAGACCAAGGGTTACGACAGCACATGCTGGGCTGAGAAATGTGCTAGTGCCGCATTTTTC
TTCATCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCAGAGGAATTGCGGTTCCGACG
ATCGGGGGGGCCGAGGGGGTGTGCGCACAAGATGTACGATGGGTGCTGATACTTGGCCCTTATAT
TGGCCCCCTATTCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTCGATCCACGGCTTACACATCCTGCCTCTTTGGGCGACATAG
Found at i:12881931 original size:867 final size:848
Alignment explanation
Indices: 12879931--12882433 Score: 2653
Period size: 903 Copynumber: 2.9 Consensus size: 848
12879921 CGCCCACCCA
* * * * * *
12879931 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGAACCGGACCGAG
** * * * *
12879996 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCGCA-TTTTCTTCATCGGGGCACC
66 GGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCACCGAGGCACC
* * *
12880060 ATTGCCGGAGCATCGCTGGAGAACCTGACCAGCGGA-ATTTGGGTTCCAG-CGATC-GGGGGGCC
131 A-T-CC-G-G-ATC-C-GGAGAACCTGACCGGC-GACA-TTAGGTTCCGGACGATCGGGGGGGCC
* * * **
12880122 GAGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-GCTCCCCTAT
187 GAAGGGGTGGGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCCTAT
* * *
12880186 -CCGTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTG
251 CCCG-CATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
12880250 CCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
315 CCAATAGCCATTAAAATGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * * * *
12880315 GTCGAGTTTTTAGCTGAA-TTTTTTG-TGCATACGAACAAAAATACAAGGATCATGTCTACCAAG
380 TTCGACTTCTTAGCTGAACTTTTTTGTTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAG
* * * * * ** *
12880378 --T-----C----C-CGAACCGTAAAAAGTTTCAAAAAT--C--A--TGAAAAATAGAAAACGAG
445 TTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAATAGAAAATGAG
*
12880425 TAGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
510 TCGTCTTGCCAGT-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
12880489 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCAC
574 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * **
12880554 GGCTTGCTCATCTCGTCTCTCTGGCCGGCTTAGTGCCTGCCCGCCTGCCAGCCCGTTCATTTCGT
639 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCG-C--CCA-CCCGCCCATTTCGT
* * * * * ** * * *
12880619 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTATGATTGGACCGGACC-AAAGGTTGCGGT
700 CAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGA-GTTACGGT
* * * * * * ** *
12880683 TGCAGGATC---AGCAACACTAGA-GGGGAACCTGACCAATCC-CTGACTTGCGCATCCCGCCCC
764 AGCAAGATCGGTAGC-ACAC-AGATAGGG-ACCCGATCGATCCTC-GGTTTGTGCATCCCGCCCC
* ** * *
12880743 TCTGGTCGGCTGAGCACTCGCACG
825 TCTGGCCGGCTGAGTGCCCGCATG
*
12880767 CTAGTTTCTTGGGTTGACTTAGGCTTATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTC----G-TG-----GG--T-T-GA---C-TT---AG-----GCATACGGAGTTCATTC
* * *** *
12880832 CCAGTCTAAGATCGAACCGGCCCGAGGGTTGTGCCAGCACATGCTGGGCTCGGGCATGTGCTGGT
40 CCAGACTAAGATCGAACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTAGT
* * * * * *
12880897 GTCGCTTTTTTCTTCATCGAGGCAGCATCGCTGGAGCATCACCGGAGAACCTGAGCGGCGACATT
105 GCCACATTTTTCTTCACCGAGGCACCATC-C--G-G-AT--CCGGAGAACCTGACCGGCGACATT
* ** *
12880962 AGGTTTCGGACGATCGGGGGGGCCGAAGGGGTGGGCTTACATGATGTGCGATGGGTGCTGGTACT
163 AGGTTCCGGACGATCGGGGGGGCCGAAGGGGTGGGCGCACATGATGTGCAATGGGTGCTGGTACT
* * * *
12881027 TGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCAT
228 TGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCAT
* *
12881092 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-AGGACACTTTTTTCAA
293 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGAGGACACTTTTTTCAA
* * *
12881156 ATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTGTTTTG-TGCGTGCCAAAAAAA
358 ATGGTCACAAAATCTTGTACACTTCGACTTCTTAGCTGAACTT-TTTTGTTGCATGCCAAAAAAA
** * * *
12881220 ATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCTTTCTGGAAAAATTTTTAAAAATCCC
422 ATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCC
12881285 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAA-TATC
487 GAACC------A----CAAAAAT-A-G-AAAAT-------GAGTCGTCTTGCCAGT-AAACT-TC
12881348 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
530 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
*
12881413 ATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTGCGCATCCCGTCTCTC
595 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* ** *
12881478 TGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCACTTGTTTTGTCAGTTGGCTTAGGCATACAGA
660 TGGCCGGCGTAGTACCCGCCCGCCCACCCGCCCA----TTTCGTCAGTTGGCTTAGGCATACAGA
* ** * *
12881543 GTTCATTCTCAATCTAAGATTGGATCAGACCGAGGGTTACGGTAGCAAGATCGGTAGCACACAGA
721 GTTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTACGGTAGCAAGATCGGTAGCACACAGA
12881608 TAGGGACCCGATCGATCCTCGGTTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCATG
786 TAGGGACCCGATCGATCCTCGGTTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCATG
* **
12881671 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCGGATTGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGAACCGGACCGAG
12881736 GGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCACCGAGGCACC
66 GGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCACCGAGGCACC
* **
12881801 AT-C-G-T-CGGAGAACCTGACCGGC-AGCATTGGGGTTCCGG-CGATCGGGGGGGCCGGGGGGG
131 ATCCGGATCCGGAGAACCTGACCGGCGA-CATT-AGGTTCCGGACGATCGGGGGGGCCGAAGGGG
*
12881860 TGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATC
194 TGGGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATC
12881925 AAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCC
259 AAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCC
* * * *
12881990 ATTAAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTC
324 ATTAAAATGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTC
* *
12882055 TTAGCTGAACTTTTTTGTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
389 TTAGCTGAACTTTTTTGTTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCC
**
12882120 AAAACTCCATCCGAAAAAATTTTAAAAAATCGTGAACCACAAAAATAGAAAATGAGTCGTCTTGC
454 AAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAATAGAAAATGAGTCGTCTTGC
* *
12882185 CAGTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGCATT
519 CAGTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
12882250 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
584 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
12882315 TCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGC
649 TCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCACCCGCCCATTTCGTCAGTTGGCTTAGGC
* * * * *
12882380 ATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGATAGTTGCGGTAGCA
714 ATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTACGGTAGCA
12882434 CATGCTGGGC
Statistics
Matches: 1418, Mismatches: 156, Indels: 178
0.81 0.09 0.10
Matches are distributed among these distances:
836 7 0.00
840 1 0.00
841 1 0.00
844 62 0.04
846 2 0.00
848 175 0.12
849 3 0.00
850 1 0.00
853 1 0.00
854 2 0.00
855 5 0.00
856 1 0.00
857 3 0.00
858 7 0.00
861 1 0.00
862 93 0.07
863 98 0.07
864 147 0.10
865 42 0.03
866 1 0.00
867 181 0.13
868 136 0.10
870 1 0.00
872 2 0.00
876 2 0.00
877 17 0.01
878 96 0.07
879 1 0.00
881 1 0.00
883 2 0.00
886 2 0.00
887 1 0.00
890 2 0.00
891 1 0.00
892 1 0.00
893 6 0.00
894 3 0.00
895 1 0.00
896 4 0.00
899 8 0.01
900 2 0.00
902 2 0.00
903 226 0.16
904 56 0.04
905 8 0.01
906 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (848 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGAACCGGACCGAG
GGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCACCGAGGCACC
ATCCGGATCCGGAGAACCTGACCGGCGACATTAGGTTCCGGACGATCGGGGGGGCCGAAGGGGTG
GGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAA
ACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAT
TAAAATGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTCTT
AGCTGAACTTTTTTGTTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAA
AACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAATAGAAAATGAGTCGTCTTGCCA
GTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCACCCGCCCATTTCGTCAGTTGGCTTAGGCAT
ACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTACGGTAGCAAGATCGGTAGCAC
ACAGATAGGGACCCGATCGATCCTCGGTTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGC
ATG
Found at i:12883929 original size:11 final size:11
Alignment explanation
Indices: 12883915--12883947 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
12883905 ATCAGGGCAC
12883915 CATCGCCGGAG
1 CATCGCCGGAG
12883926 CATCGCCGGAG
1 CATCGCCGGAG
12883937 CATCGCCGGAG
1 CATCGCCGGAG
12883948 AACCTGACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.36, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:12884454 original size:885 final size:883
Alignment explanation
Indices: 12882974--12886278 Score: 4063
Period size: 885 Copynumber: 3.7 Consensus size: 883
12882964 GGCTGAACTG
* * * * *
12882974 AGGGTTACGACAGCACATGCTGGGCTGGGGCATGTGCTGGTGCTACATTTTTCTT-TGCCGGGGC
1 AGGGTTACGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCT--C-AGGC
* * * * *
12883038 ACCAT----C-GCCGAAGCATCACCAGAGAACCTGACCGGTGGCATTGGGGTTCCGACAATCGGG
63 ACCATCGAGCAGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATGGGG
* * ** * *
12883098 GGGTCGGGGGGTGTGCACACAACATGTGCGATGGGTGCTGGTATTTGGCCCTTATGTTGGCCCCC
128 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
12883163 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGC
193 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
12883228 TGCCCGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
258 TGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
12883292 CACTTCGAGTTTTTAGCTGAACTTTTTTGTCCATGCCAATAAAAATACAAGGATCATGTCTACCA
322 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * * * *
12883357 AGTTTGGTGCCAAAACTCTTTCCAAAAAAATTTTTAAAAATCTCGAATCGTAAAAAGTTTCAAAA
387 AGTTTGGGGCCAAAACTCCTT-CTAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAA
** * *
12883422 ATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCCTAAGGGACCATT
451 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
12883487 GTATGAATTTACAAGCCA-AAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCC
516 GTATGAATTTACAAGCCATAAAAAA-GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
*
12883551 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC-C
580 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAC
12883615 CTCCACCCGCATGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
645 CTCCACCCGC--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
12883680 GAATTGGACCGAGGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCTG
708 GAACTGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-G
* * *
12883745 ACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
772 ACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGG
12883810 CATACGGAGTTCATTCCCAGTCTAAG-ATA-G-G-A-C-C-AGACCA
837 CATACGGAGTTCATTCCCAGTCTAAGCATACGAGTACCACAAGACCA
**
12883850 AGGGTTACGGCAGCACATTCTGGGC-AAGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCA
1 AGGGTTACGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-TCA-GGCA
* ** * *
12883914 CCATCGCCGGAGCATCGCCGGAGCATCGCCGGAGAACCTGACAAGTGGCATTGGGGTTCCGGCGA
64 CCAT---C-GAGCA--GCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* *
12883979 TGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGATGCTGGTACTTGGCCCTTATATTG
123 TGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
12884044 GCCTCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGA-CATTTGAGATTTTATAG
187 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * * *
12884107 GTTCGCTGCCAGTAGGCATTAAAGTGTCAGAAATGCGAACACTTTTTTCAAATGGTCACGAAATC
252 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
12884172 TTGTACACTTTGATTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGACCACGTC
317 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* * *
12884237 TACCGAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
382 TACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
12884302 TGAAAATCATGAAAAATAGAAAATGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
446 CGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
12884367 CCATGGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
511 CCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAAAAATATGAAGATGTGCCTAA
* * * * * *
12884432 ACCCACCTACCACCCAATCGATCCACGGCTTGTGCGTCTCATCTCTCTGGCCGGCATAGTGCCCG
576 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
12884497 CCCGCCTGTCAGCC-CGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GATGTTCATTCCCAGTCTA
641 -CCACCT-CCACCCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTA
* * * * ** * * * *
12884560 AGATC-AGACTAGACCGAGGGTTACAGCAGCAAGATCGGTAGTACGTGGAGAGGGATCCGGCCAA
703 AGATCGA-ACTGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * *
12884624 TCCCCGGCTTGCGCATCCCGCCCCGC-GGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGA
767 T-CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGA
*
12884688 CTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
831 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG-T-A---CCA--C--A-A---GA-
*
12884753 TGGCCCG
881 ----CCA
* ** * * *
12884760 AGGGTTGCAACAACACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCA
1 AGGGTTACGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-TC-AGGCA
* *
12884825 CCAT----CA-CCGGAGCATCGCTAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGG
64 CCATCGAGCAGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGG
* * * *
12884885 GGGCCGAGGGGTGTGCGCACATGATGTGTGATGGCTGCTGGTACTTGGGCCTTATATTGGCCCCC
128 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
12884950 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTGC
193 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
12885015 TGCCAGTGGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAACTTGTAC
258 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
12885080 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACCTCTACCAA
323 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** *
12885145 GTTTGGGGTGAAAACTCCTTCTAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAAT
388 GTTTGGGGCCAAAACTCCTTCTAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAAT
* *
12885210 CATGACAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
453 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* **
12885275 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACC
518 ATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* *
12885340 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGC-C
583 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCACCTC
* * * * * * * *
12885404 CGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATATGGAGTTTATTCCCATTCTAAGATGGGA
648 CACCCG--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * ** * * * * *
12885469 CCGAACCGAGGGTTGGGGCAGCAAGATTGGCAGCACACAGAAGGGGACCCGACTGATCCCCAGCT
711 CTGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGA-CT
* * * * *
12885534 TGCGCATCCCACCCCTCTGGTCGGCTGATCGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCAT
775 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
12885599 ACGGAGTTTATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGA
840 ACGGAGTTCATTCCCAGTCTAAGCATAC-GAG-T-A---CCA--C-AAG-----ACC--A
* *
12885659 CCGAGGGTTACGGTAGCAC-TTGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTC-T-TC--G
1 ---AGGGTTACGGCAGCACATT-CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCTCAGG
* * * * * *
12885719 -----TCGAG--G-C--AACATCGCCGGAGAACCTGACCGACGGCATTGGGATTCCAACGACCGG
62 CACCATCGAGCAGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TGG
*
12885774 GGGGGTCAAGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
126 GGGGG-C-CGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
12885839 CCCCCTATCCCTCATCAAACCTCGAGAACTCAGC-CCCCCTTAAAGAGCATTTGAGATTTTACAG
188 CCCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAG
12885903 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
252 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
12885968 TTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
317 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
** * *
12886033 TAAGAAGTTTGGGGCCAAAACTCCTTCTAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTT
382 TACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
*
12886098 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
447 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
12886163 CATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCAAGGAGAAATATGAAGATGTGCCTAAA
512 CATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA
* **
12886228 CCCACCTACCACCCTATTGATCCACCACTTGCGCATCCCGTCTCTCTGGCC
577 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
12886279 CGTCCGCTCG
Statistics
Matches: 2100, Mismatches: 246, Indels: 148
0.84 0.10 0.06
Matches are distributed among these distances:
875 35 0.02
876 23 0.01
877 1 0.00
883 1 0.00
884 69 0.03
885 469 0.22
886 71 0.03
887 85 0.04
888 5 0.00
891 46 0.02
892 1 0.00
893 6 0.00
894 457 0.22
895 2 0.00
896 1 0.00
897 3 0.00
898 4 0.00
899 2 0.00
900 134 0.06
901 334 0.16
902 287 0.14
903 2 0.00
905 2 0.00
910 22 0.01
911 37 0.02
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
AGGGTTACGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCTCAGGCACC
ATCGAGCAGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCTAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAAAGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCACCTCCAC
CCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGA
CCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGACTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGAGTACCACAAGACCA
Found at i:12884722 original size:26 final size:26
Alignment explanation
Indices: 12884693--12884745 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12884683 GTTGACTTAG
*
12884693 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12884719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12884745 G
1 G
12884746 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12885331 original size:901 final size:898
Alignment explanation
Indices: 12883809--12886278 Score: 3403
Period size: 894 Copynumber: 2.7 Consensus size: 898
12883799 GTTGACTTAG
* * * *
12883809 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCAAGGGTTACGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATACTGGG
** * *
12883874 C-AAGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGCCGGAGC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAGGCACCAT--------CA---CCGGAGC
** * *
12883938 ATCGCCGGAGAACCTGACAAGTGGCATTGGGGTTCCGGCGAT-GGGGGGGCCGGGGGGGTGTGCG
120 ATCG-C-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCG
*
12884002 CACATGATGTGTGATGGATGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCT
182 CACATGATGTGTGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12884067 TGAGAACTCACA-CCCCTTAAAGA-CATTTGAGATTTTATAGGTTCGCTGCCAGTAGG-CATTAA
247 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT-GGCCATTAA
* * * * * *
12884129 AGTGTCAGAAATGCGAACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTTGATTTTTTTGC
311 AGTGTCTGAAATG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
12884194 TGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGACCACGTCTACCGAGTTTGGGGCCAAAACT
375 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
12884259 CCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
440 CCTTCT-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAA
* * *
12884324 ATGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCC
504 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
12884389 ATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGAT
569 ATAAAAATGGCATTGGCA-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * *
12884454 CCACGGCTTGTGCGTCTCATCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGTCAGCCCGCTCGTT
633 CCACGGCTTGCGCATCCCATCTCTCTGGCCGACATAGTGCCCGCCAGCCCGCCAGCCCGCTCGTT
*
12884519 TCGTCGGTTGGCTTAGGCATA-CGATGTTCATTCCCAGTCTAAGATCAGACTAG-ACCGAGGGTT
698 TCATCGGTTGGCTTAGGCATATCGA-GTTCATTCCCAGTCTAAGATCAGAC-AGAACCGAGGGTT
* * ** * * * * *
12884582 ACAGCAGCAAGATCGGTAGTAC-GTGGAGAGGGATCCGGCCAATCCCCGGCTTGCGCATCCCGCC
761 ACAGCAGCAAGATCGGCAGCACACAGAAG-GGGACCCGACCAATCCCCAGCTTGCGCATCCCACC
*
12884646 CCGC-GGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
825 CCGCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
12884710 GCAGTCTAA
890 CCAGTCTAA
* * * ** *
12884719 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGCCCGAGGGTTGCAACAACACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATACTGGG
*
12884784 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCACCGGAGCATCGCTAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAGGCACCATCACCGGAGCATCGC--GAGA
* *
12884849 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGTGTGCGCACATGATGTGT
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
* *
12884914 GATGGCTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12884979 CCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATA
259 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAAT-
*
12885044 GGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * **
12885109 GCATGCCAAAAAAAATACAGGGATCACCTCTACCAAGTTTGGGGTGAAAACTCCTTCTAAAAAAT
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAT
* * * *
12885174 TTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGACAAATGGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
12885239 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
12885304 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
583 GGCA-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
12885369 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTT
647 TCCCATCTCTCTGGCCGACATAGTGCCCGCCAGCCCGCCAGCCCGCTCGTTTCATCGGTTGGCTT
* * * ** * *** *
12885434 AGGCATATGGAGTTTATTCCCATTCTAAGATGGGACCGAACCGAGGGTTGGGGCAGCAAGATTGG
712 AGGCATATCGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTACAGCAGCAAGATCGG
** * * *
12885499 CAGCACACAGAAGGGGACCCGACTGATCCCCAGCTTGCGCATCCCACCCCTCTGGTCGGCTGATC
777 CAGCACACAGAAGGGGACCCGACCAATCCCCAGCTTGCGCATCCCACCCCGCTGGCCGGCTGAGC
* * * *
12885564 GCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAG
842 ACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
12885621 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGGTAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATACTGGG
* * *
12885686 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGAGGCA--A-CATC---GC--CG-GAGAAC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAGGCACCATCACCGGAGCATCGCGAGAAC
* * * * *
12885742 CTGACCGACGGCATTGGGATTCCAACGACCGGGGGGGTCAAGGGGGGTTGTGCGCACATGATGTG
131 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C-CGGGGGG-TGTGCGCACATGATGTG
* *
12885807 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAG
193 TGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-
* *
12885872 C-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAA
*
12885936 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTT
322 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
12886001 GTGCATGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGGCCAAAACTCCTTCTAAAAA
386 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAA
* *
12886066 TTTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12886131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
12886196 TTGGCAAGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACCACTTGCG
581 TTGGCAA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
12886261 CATCCCGTCTCTCTGGCC
645 CATCCCATCTCTCTGGCC
12886279 CGTCCGCTCG
Statistics
Matches: 1396, Mismatches: 148, Indels: 48
0.88 0.09 0.03
Matches are distributed among these distances:
891 38 0.03
892 1 0.00
893 6 0.00
894 459 0.33
895 1 0.00
896 2 0.00
899 4 0.00
900 128 0.09
901 347 0.25
902 313 0.22
903 3 0.00
910 56 0.04
911 38 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATACTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAGGCACCATCACCGGAGCATCGCGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGA
TGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
AACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
ATCTCTCTGGCCGACATAGTGCCCGCCAGCCCGCCAGCCCGCTCGTTTCATCGGTTGGCTTAGGC
ATATCGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTACAGCAGCAAGATCGGCAGC
ACACAGAAGGGGACCCGACCAATCCCCAGCTTGCGCATCCCACCCCGCTGGCCGGCTGAGCACCC
GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12885621 original size:26 final size:26
Alignment explanation
Indices: 12885592--12885645 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
12885582 TTGGTTGACT
*
12885592 TAGGCATACGGAGTTTATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
12885618 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
12885644 TA
1 TA
12885646 AGATCAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:12887516 original size:627 final size:626
Alignment explanation
Indices: 12886400--12887579 Score: 1808
Period size: 627 Copynumber: 1.9 Consensus size: 626
12886390 ATGCTGGGTG
* ** * *
12886400 CGGGCATGTGCTGGTGCCATATTTTTCTTCTCCGGGGCACCATCGTCGGAGCATCGCCAGAGATC
1 CGGGCATGTGCTGGTGCCATATTTTTCTTCGCAAGGGCACCATCATCGGAGCATCGCCAGAGAAC
* *
12886465 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
66 CTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCG
* *
12886530 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
131 ATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12886595 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
196 CCCCTTAAAAAGCATTCGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGAGTCTGAAATGG
* *
12886660 GGACATTTTTTTCAAATGGTCACAAAATGATGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
261 GGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
* * * * * * * * *
12886725 CCTGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTTCGAAAGAAT
326 CATGACACAAAAAATACAAGGATAACGTCTACCAAGTTTGGGACAAAAAACCCTTCCCAAAAAAT
* * * ** * *
12886790 TTTAAAAAATCCTAAGCCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCCTGC
391 TTTAAAAAATCCCAAACCGCAAAAAGTGTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGC
*
12886855 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATT
456 CATGAAACTTCACGTGAAAGCTTAAGGGACCATTGCATGAATTT-CAAGCCATAAAAATGGCATT
*
12886920 GGCACATAGAAATATGAAGATGTGCCTAAACCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
520 GGCACATAGAAATATGAAGATGTACCTAAACCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
12886985 AGATCGGATCAAACCGAGGGTTGCAGGCTCACATGCTAGGCT
585 AGATCGGATCAAACCGAGGGTTGCAGGCTCACATGCTAGGCT
* * *
12887027 CGGGCATGTGCTGGTGCCGTATTTTTGTTCGCAAGGGCACCATCATCGGAGCATCGCCGGAGAAC
1 CGGGCATGTGCTGGTGCCATATTTTTCTTCGCAAGGGCACCATCATCGGAGCATCGCCAGAGAAC
* * * *
12887092 CTAATCGGTC-GCATTGGGGTTCCGGTGATC-GGGGGGCCGGCGGTGGTGTGCACACATGATGTG
66 CTAA-CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGGTGTGCACACATGATGTG
12887155 CGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
129 CGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12887220 ACCCCCTTAAAAAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAAT
194 ACCCCCTTAAAAAGCATTCGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGAGTCTGAAAT
* * *
12887285 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTT
259 GGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAA-TGTTTTT
* * * * *
12887350 TTGCATGACA-AAAAAATACAAGGATAACGTCTACCAAGTTTTGTACCAAAACCCCTTCCCAAAA
323 GTGCATGACACAAAAAATACAAGGATAACGTCTACCAAGTTTGGGACAAAAAACCCTTCCCAAAA
* *
12887414 AATTTTAAAAAATCCCAAACCGTAAAAAGTGTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
388 AATTTTAAAAAATCCCAAACCGCAAAAAGTGTCAAAAATCATGAAAAATAGAAAACGAGTCGTCC
* *
12887479 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTGAAGCCATAAAAATGGCA
453 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGCATGAATTTCAAGCCATAAAAATGGCA
** *
12887544 TTGGCATGTAGAAATATGATGATGTACCTAAACCCA
518 TTGGCACATAGAAATATGAAGATGTACCTAAACCCA
12887580 CGTACCACCC
Statistics
Matches: 495, Mismatches: 55, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
626 59 0.12
627 420 0.85
628 16 0.03
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (626 bp):
CGGGCATGTGCTGGTGCCATATTTTTCTTCGCAAGGGCACCATCATCGGAGCATCGCCAGAGAAC
CTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCG
ATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAAAGCATTCGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGAGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
CATGACACAAAAAATACAAGGATAACGTCTACCAAGTTTGGGACAAAAAACCCTTCCCAAAAAAT
TTTAAAAAATCCCAAACCGCAAAAAGTGTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGC
CATGAAACTTCACGTGAAAGCTTAAGGGACCATTGCATGAATTTCAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTACCTAAACCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
GATCGGATCAAACCGAGGGTTGCAGGCTCACATGCTAGGCT
Found at i:12887870 original size:26 final size:26
Alignment explanation
Indices: 12887834--12887889 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12887824 TGGGTTGACT
12887834 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
*
12887860 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
12887886 TAAG
1 TAAG
12887890 ATTGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCAAGTC
Found at i:12888769 original size:26 final size:26
Alignment explanation
Indices: 12888739--12888791 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12888729 GTTGACTTAG
12888739 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
12888765 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12888791 G
1 G
12888792 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12889382 original size:605 final size:605
Alignment explanation
Indices: 12888230--12889440 Score: 1777
Period size: 605 Copynumber: 2.0 Consensus size: 605
12888220 TACACTTCGA
* * * * *
12888230 GTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAACGATCACGTCTACCAATTTTGGG
1 GTTTTTAGCTAAATTTTTTTGTGAATGCCAACAAAAATACAACGATCACGTATACCAAGTTTGGG
* * *
12888295 GCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTTAAAAATCGTGAA
66 GCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCACGAACCAAAAAAAGTTTCAAAAATCGTGAA
*
12888360 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGAGCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAAT
* ***
12888425 TTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
196 TCACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
** *
12888490 CCTATCGATTCACGACTTGCGCATCCCATCTCTCTGCCTGGCGTAGTGCCCGCCCGCTCGTCCGC
261 CCTATCGACCCACGACTTGCGCATCCCATCTCTCTGACTGGCGTAGTGCCCGCCCGCTCGTCCGC
*** * * *
12888555 TTTCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
326 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGATCAGACC
* * * * **
12888620 AAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGGCTCGGTCGATCCCTGGGTTACGCAT
391 AAGGGTTACGACAGCAGGATCAGCAGCACGCAGAGGGGGGCCCGGCCGATCCCCGACTTACGCAT
* * * *
12888685 CTCACCCTTTAGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
456 CTCACCCTCTAGGCCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
* *
12888750 TCATTCCAAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATC-GAACCGAGGGTTAC
521 TCATTCCAAGTCGAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAG-ACCGAGGGTTAC
* * *
12888814 GGCAGCACATGCTGGGCTCGG
585 AGCAACACATGCTAGGCTCGG
*
12888835 GTTTTTAGCTAAATTTTTTTGTGAATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTGGG
1 GTTTTTAGCTAAATTTTTTTGTGAATGCCAACAAAAATACAACGATCACGTATACCAAGTTTGGG
* * *
12888900 GCTAAAATTCCTTCCAAAAAAATTTTAAAAAATCACGAATCGAAAAAAGTTTCAAAAATCGTGAA
66 GCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCACGAACCAAAAAAAGTTTCAAAAATCGTGAA
*
12888965 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAAT
12889030 TCACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
196 TCACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
12889095 CCTATCGACCCAC-AGCTTGCGCATCCCGTCTCTCTTGAC-GGCGTAGTGCCCGCCCG-TACG-C
261 CCTATCGACCCACGA-CTTGCGCATCCCATCTCTC-TGACTGGCGTAGTGCCCGCCCGCT-CGTC
* * **
12889156 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAAATGGGATCA
323 -CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGATCA
** ** * * *
12889221 GACTGAGGGTTGTGGCAGCAGGATCAGCAGCATGTAGAGGGGGGCCCGGCCGATCCCCGACTTAC
387 GACCAAGGGTTACGACAGCAGGATCAGCAGCACGCAGAGGGGGGCCCGGCCGATCCCCGACTTAC
* * * *
12889286 GCATCTCGCCCCTCT-GGCCGGCTAAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATAC
452 GCATCTC-ACCCTCTAGGCCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
* *
12889350 GGAGTTCATTCCCAGTCGAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGG
516 GGAGTTCATTCCAAGTCGAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGG
*
12889415 TTGCAGCAACACATGCTAGGCTCGG
581 TTACAGCAACACATGCTAGGCTCGG
12889440 G
1 G
12889441 CATGTGCTGG
Statistics
Matches: 539, Mismatches: 61, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
604 3 0.01
605 527 0.98
606 9 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (605 bp):
GTTTTTAGCTAAATTTTTTTGTGAATGCCAACAAAAATACAACGATCACGTATACCAAGTTTGGG
GCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCACGAACCAAAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAAT
TCACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGACCCACGACTTGCGCATCCCATCTCTCTGACTGGCGTAGTGCCCGCCCGCTCGTCCGC
CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGATCAGACC
AAGGGTTACGACAGCAGGATCAGCAGCACGCAGAGGGGGGCCCGGCCGATCCCCGACTTACGCAT
CTCACCCTCTAGGCCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCAAGTCGAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACA
GCAACACATGCTAGGCTCGG
Found at i:12889836 original size:25 final size:26
Alignment explanation
Indices: 12889808--12889863 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
12889798 GTTTGGGGCT
* *
12889808 AAAATTCCT-TCCAAAAAAATTTTAA
1 AAAATTCCTAACCAAAAAAAGTTTAA
*
12889833 AAAA-TCCTGAACCGAAAAAAGTTTAA
1 AAAATTCCT-AACCAAAAAAAGTTTAA
12889859 AAAAT
1 AAAAT
12889864 CATGAAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 4 0.16
25 4 0.16
26 17 0.68
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.25
Consensus pattern (26 bp):
AAAATTCCTAACCAAAAAAAGTTTAA
Found at i:12889877 original size:26 final size:26
Alignment explanation
Indices: 12889821--12889879 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
12889811 ATTCCTTCCA
* * **
12889821 AAAAAATTTTAAAAAATCCTGAACCG
1 AAAAAAGTTTAAAAAATCATGAAAAG
12889847 AAAAAAGTTTAAAAAATCATGAAAAAG
1 AAAAAAGTTTAAAAAATCATG-AAAAG
12889874 AAAAAA
1 AAAAAA
12889880 CGAGTCGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.19
Consensus pattern (26 bp):
AAAAAAGTTTAAAAAATCATGAAAAG
Found at i:12890432 original size:158 final size:159
Alignment explanation
Indices: 12890058--12890433 Score: 448
Period size: 159 Copynumber: 2.4 Consensus size: 159
12890048 CCCGCCCACT
* * * * * *
12890058 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGA
* * * *
12890123 CCGGACTGAAGGTTGCGGTAGTAGGATCGGCAGCACGCAAAGAGGGACCCGATCGATCCCCGGCT
66 CCGGACTGAAGGTTGCGGCAGCAAGATCGGCAGCACGCAAAGAGGGACCCGACCGATCCCCGGCT
* *
12890188 TGCGCATCCCACCCCTCTGGCCGATTGAG
131 TACGCAACCCACCCCTCTGGCCGATTGAG
* * *
12890217 CGCCCGCACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGA
* * * * * * * *
12890282 CCGGACTGAGGGTTGTGGCAGCAAGATTGGTAGCACGCAGAGGGGGACCCGACCGGTCCCCGTCT
66 CCGGACTGAAGGTTGCGGCAGCAAGATCGGCAGCACGCAAAGAGGGACCCGACCGATCCCCGGCT
* * * *
12890347 TACGCAACTC-GCGCTCTGGCCGGTTGAG
131 TACGCAACCCACCCCTCTGGCCGATTGAG
* * * * * *
12890375 TGGCCGCATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCCAATCTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12890434 CTTACGGAGT
Statistics
Matches: 182, Mismatches: 35, Indels: 1
0.83 0.16 0.00
Matches are distributed among these distances:
158 66 0.36
159 116 0.64
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGA
CCGGACTGAAGGTTGCGGCAGCAAGATCGGCAGCACGCAAAGAGGGACCCGACCGATCCCCGGCT
TACGCAACCCACCCCTCTGGCCGATTGAG
Found at i:12890446 original size:26 final size:26
Alignment explanation
Indices: 12890410--12890459 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12890400 GACTTATGCA
*
12890410 TACGGAGTTCATTTCCAATCTAAGCT
1 TACGGAGTTCATTCCCAATCTAAGCT
*
12890436 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
12890460 ATCGAACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCT
Found at i:12890622 original size:26 final size:26
Alignment explanation
Indices: 12890592--12890643 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12890582 GTTGACTTAG
12890592 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
12890618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12890644 AATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12890628 original size:185 final size:184
Alignment explanation
Indices: 12890249--12890643 Score: 504
Period size: 184 Copynumber: 2.1 Consensus size: 184
12890239 GTTGATTTAG
* * ** ** * **
12890249 GCATACGGAGTTCATTCCCAGTCTAAGACCGGACCGGACTGAGGGTTGTGGCAGCAAGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCGAACCGAACCAAGGGTTACGGCAGCAAGATCGACA
* * * * * * * *
12890314 GCACGCAGAGGGGGACCCGACCGGTCCCCGTCTTACGCAACTCGCGCTCTGGCCGGTTGAGTGGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACCCAACCCGCCCTCTGGCCGGCTGAGCGCC
* * *
12890379 CGCATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCCAATCTAA
131 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAA
* * *
12890433 GCTTACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCGAACCGAACCAAGGGTTACGGCAGCAAGATCGACA
** * * *
12890498 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCCCATCCCGCCCTTCTGGTCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACCCAACCCGCCC-TCTGGCCGGCTGAGCGC
*
12890563 CCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TTCCAAGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAA-TCTAA
12890618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12890644 AATCAGACCA
Statistics
Matches: 179, Mismatches: 30, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
184 97 0.54
185 82 0.46
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCGAACCGAACCAAGGGTTACGGCAGCAAGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACCCAACCCGCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAA
Found at i:12890672 original size:185 final size:182
Alignment explanation
Indices: 12890249--12890673 Score: 510
Period size: 185 Copynumber: 2.3 Consensus size: 182
12890239 GTTGATTTAG
* * * * **
12890249 GCATACGGAGTTCATTCCCAGTCTAAGACCGGACCGGACTGAGGGTTGTGGCAGCAAGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACC-GACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * * * *
12890314 GCACGCAGAGGGGGACCCGACCGGTCCCCGTCTTACGCAACTCGCGCTCTGGCCGGTTGAGTGGC
64 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACCCAACCCGCCCTCTGGCCGGCTGAGCGCC
* * *
12890379 CGCATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCCAATCTAA
129 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAA
* * * *
12890433 GCTTACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCG-ACCGAGGGTTGCGGCAGCAAGATCGACA
** * * *
12890498 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCCCATCCCGCCCTTCTGGTCGGCTGAGCGC
64 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACCCAACCCGCCC-TCTGGCCGGCTGAGCGC
*
12890563 CCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TTCCAAGTCTAA
128 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAA-TCTAA
* *
12890618 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTGGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACC-GACCGAGGGTTGCGGCAGCA
12890674 CATGTTGGGC
Statistics
Matches: 203, Mismatches: 32, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
183 2 0.01
184 95 0.47
185 104 0.51
186 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGACCGAGGGTTGCGGCAGCAAGATCGACAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTACCCAACCCGCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAA
Found at i:12891521 original size:26 final size:26
Alignment explanation
Indices: 12891491--12891543 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12891481 GTTGACTTAG
12891491 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
12891517 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12891543 G
1 G
12891544 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12893278 original size:26 final size:25
Alignment explanation
Indices: 12893248--12893299 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
12893238 GTTTACTTAG
*
12893248 GCATACAGAGTTCA-TTCCTAGTCTAA
1 GCATA-AGAGCTCATTTCC-AGTCTAA
*
12893274 GCATAGGAGCTCATTTCCAGTCTAA
1 GCATAAGAGCTCATTTCCAGTCTAA
12893299 G
1 G
12893300 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATAAGAGCTCATTTCCAGTCTAA
Found at i:12894149 original size:26 final size:26
Alignment explanation
Indices: 12894113--12894165 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12894103 GTTGACTTAG
12894113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12894139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12894165 G
1 G
12894166 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12895049 original size:26 final size:26
Alignment explanation
Indices: 12895019--12895068 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
12895009 GACTTATGCG
12895019 TACAGAGTTCATTCCCAGTCTAAGCA
1 TACAGAGTTCATTCCCAGTCTAAGCA
12895045 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
12895069 ATTATACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCA
Found at i:12896812 original size:26 final size:26
Alignment explanation
Indices: 12896776--12896854 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12896766 GTTGACTTAT
*
12896776 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12896802 GCATACGGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12896828 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12896854 G
1 G
12896855 ATCGGACAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12897719 original size:26 final size:26
Alignment explanation
Indices: 12897679--12897731 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12897669 GTTGACTTAG
*
12897679 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGCTCATTCCCAATCTAA
* *
12897705 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAATCTAA
12897731 G
1 G
12897732 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAATCTAA
Found at i:12898625 original size:885 final size:876
Alignment explanation
Indices: 12895857--12898870 Score: 3797
Period size: 911 Copynumber: 3.4 Consensus size: 876
12895847 CTCCGGGATG
* *
12895857 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
12895922 ATTCCCA-TCTAAGATCGGACCGGTCTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGC
66 ATTCCCAGTCTAAGACCGGACCGGTC-GAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGC
**** * * *
12895986 TGGTGTTGTATTTTTCTTT-GTC-AGGGCACCATCGTCAGAACATCACTGGAGAACCTAACCGGC
130 TGGTGCCACATTTTT-TTTCATCGA-GGCACCATCGTCAG------A----AGAACCTGACCGAC
* *
12896049 GGCAATGAGGTTCC---GA-CGATCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTAC
183 GGCATTG-GGTTCCGGTGATCGATC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
12896110 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
246 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
12896175 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-A
311 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
12896239 AATGGTCACAAAATCTTGTAGACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAA
376 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAA
* * * *
12896304 TACAAGGTTCACGTCTACCAAGTTTGGGGCTAAAATTCCTTCCGAAAGAATTTTAAAAAATACCA
441 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT-CCA
* * *
12896369 AACCGTAAAAAGTTTCCAAAATCATCAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACG
505 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
12896434 TGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* *
12896499 TGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCAGTCTCTCTGG
635 TGAAGATGTGCC-TAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGG
* * *
12896564 CCGGCGTAGTGCATGCTCGCCCGTCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
699 CC-G-G-AGT--A-G-T-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
12896629 CATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGATAGCAGGATCGACAGCACGCAGAGGG
756 CATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGG
* *
12896694 GGACCCGACTAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCA
821 GGACCCGGCTAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
*
12896750 CACGCTCGTTTCGTGGGTTGACTTATGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
12896814 CATTCCCAGTCTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACAGGACCGAGGGTTTTGG
65 CATTCCCAG--T---C-TA---AG----------A-C------CGGACCGG-TCGAGGGTTGTGG
* *
12896879 CAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC-
103 CAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTTTTCATCGAGGCACCATCGTCA
* * *
12896942 GAAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGA--GGGGGGTGTGCGCACATGATGTGT
167 GAAGAACCTGACCGACGGCATT-GGGTTCCGGTGATCGATCGGGGGGTGTGCGCACATGATGTGC
12897005 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
231 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12897070 CCCACTTAAAGAGCATTTGGGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
296 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
* *
12897135 GGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
361 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
* * * * *
12897200 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTAGGGTCCAAAACTCTTTCCGAAAAAA
426 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* ** * *
12897265 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCATCTTG
491 TTTTAAAAAAT-CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
12897330 CCATGAAACTTCACGTGAAGGCTTAGGGGATCGTTGTATGAATTTACAAGCCATAAAAATGGCAT
555 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
12897395 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
620 TGGCACGTAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** *
12897460 ATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCACCGGTTGGCTTAGCCATA
684 ATCCAGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
12897525 CGGAGTTCATTCCTAGTCTAAGGTCAGACCCGACCGAGGGTTGCCACAGTAGGATCGGCAGCATG
749 CGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
* * * **
12897590 CAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCTG
814 CAGAGGGGGACCCGGCTAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
* * ** * *
12897653 CACGTTCATTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGCTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
12897718 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACATGCTTGGATCGAGCATGTGC
66 ATTCCCAGTCTAAGACCGGACCGG-TCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGC
* *
12897783 TGGTGCCACATTTTTTTTCGTCGAGGCACCATCG-CAGAAGAACCTGACCGGCGGCATTGGTGTT
130 TGGTGCCACATTTTTTTTCATCGAGGCACCATCGTCAGAAGAACCTGACCGACGGCATTGG-GTT
* * *
12897847 CCGGTGATCGGGGAAGCCGGGTGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGACC
194 CCGGTGATC---G-A-TCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
12897912 TTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGA
253 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
12897977 TTTTACAGGTTTGCT-CTCAGTAGCCACTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGT
318 TTTTACAGGTTTGCTAC-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
12898041 GACAAAACCTTGTACACTTCGAGTTTTTGGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAG
382 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAG
** *
12898106 GATCACGTCTAATAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAT-C-AACCGTA
447 GATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCAAACCGTA
*
12898169 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGGAACTTCACGTGAAGGC
512 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
12898234 TTAAGGGACCATTGTATGACTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
577 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * * * *
12898299 GTACCTAAGCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCCGACCGGAGTA
642 GTGCCTAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGGAGTA
* *
12898364 GTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTGTAAGA
707 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* *** * *
12898429 TCAGACCAAAATTAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCAATCCC
772 TCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCTAATCCC
* * * * *
12898494 CGGCTTGTGCATCCCACCCCTCTGGTCGGTTGAGCACCCA
837 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
*
12898534 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCC-GTCTAAGCATACAGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * ** ** *
12898598 ATTCTCAGTCTAGGATCAGACCGGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCAT-TGG
66 ATTCCCAGTCTAAGACCGGACCGG-TCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGT-G
* * *
12898662 CTGGTG--AGATTTTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGA
129 CTGGTGCCACA-TTTTTT-TTCATCGAGGCACCAT---C---G--TCA--GAAGAACCTGACCGA
** * **
12898725 CGGCATTAGGGTTCCAATGATCGGGGGGGTCGGGGGGCATGCGCACATGATGTGCGATGGGTGCT
182 CGGCATT-GGGTTCCGGTGATC-----GATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
12898790 GGTACTTGG-CCTTAATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
241 GGTACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
12898853 AGAGCATTTGAGATTTTA
305 AGAGCATTTGAGATTTTA
12898871 TAGATTTTAC
Statistics
Matches: 1857, Mismatches: 194, Indels: 144
0.85 0.09 0.07
Matches are distributed among these distances:
876 3 0.00
877 104 0.06
878 3 0.00
879 7 0.00
880 88 0.05
881 239 0.13
882 132 0.07
883 2 0.00
884 5 0.00
885 267 0.14
886 1 0.00
889 66 0.04
890 42 0.02
891 34 0.02
892 2 0.00
893 72 0.04
894 2 0.00
896 1 0.00
897 2 0.00
898 1 0.00
899 1 0.00
900 2 0.00
901 1 0.00
903 211 0.11
904 2 0.00
905 1 0.00
906 1 0.00
908 2 0.00
909 23 0.01
910 163 0.09
911 299 0.16
912 2 0.00
913 5 0.00
919 3 0.00
920 67 0.04
921 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGACCGGACCGGTCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCT
GGTGCCACATTTTTTTTCATCGAGGCACCATCGTCAGAAGAACCTGACCGACGGCATTGGGTTCC
GGTGATCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCAAACCGTAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGGAGTAGTGCCCGCC
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAG
ACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCTAATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
Found at i:12900096 original size:26 final size:26
Alignment explanation
Indices: 12900060--12900112 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12900050 GTTGGCTTAG
12900060 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12900086 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12900112 G
1 G
12900113 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12900997 original size:26 final size:26
Alignment explanation
Indices: 12900961--12901013 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12900951 GTTGGCTTAG
*
12900961 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12900987 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12901013 G
1 G
12901014 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12901752 original size:27 final size:27
Alignment explanation
Indices: 12901714--12901767 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
12901704 AGTTCATTCC
*
12901714 CAGTCTAAGATCAGACTGGACTGAAGG
1 CAGTCTAAGATCAGACAGGACTGAAGG
*
12901741 CAGTCTAAGATCAGACAGGATTGAAGG
1 CAGTCTAAGATCAGACAGGACTGAAGG
12901768 TTGTGATAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.19
Consensus pattern (27 bp):
CAGTCTAAGATCAGACAGGACTGAAGG
Found at i:12902279 original size:896 final size:878
Alignment explanation
Indices: 12898876--12910652 Score: 8733
Period size: 901 Copynumber: 13.2 Consensus size: 878
12898866 TTTTATAGAT
* ** *
12898876 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGACTAAACCCACCTACCA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
12898941 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCCGTC-ATAGTGCCCGCCCGCCCACCC
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCGCCTGCCCA---
* * ** * *
12899005 GCTCGTTTTGTCGGTTGGCTTAGGCATGCAAAGTTCATTCCCAATCTAAGAT----TGGACCA-G
128 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGACGAGG
* * ** ** * * * ** ** * *
12899065 ACT-G-A-AGGTTACGGCAGCAGGATTGACAGCACATAGAGGGGGACCCGACCGATCCTCGGCTT
192 GCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTT
* *
12899127 GCGCATCCCGCCCCTCTGGCCGG-TGAGCGCCCGCTCGCTCATTTCGTGGGTTGACTTAGGCATA
257 GCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * ** * * *
12899191 CGGAGTTCATTCCTAGTCTAAGATCGGA-CCGGACCGAGGGTTACGGTAGTACATGCTGGGCT-T
322 CGGAGTTCATTCCCAGTCTAAGATCAGATCAAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* *
12899254 AGGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC-TCCGGAGAA
387 A-GCAAGTGCTGGTGTC-GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGT-CGGAGAA
* * * * *
12899317 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTACACACATGATGTGCG
449 CCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
* ** *
12899382 ATGGGTGCTGTTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACAC
513 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12899447 CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCCGAAATGG
578 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12899512 GGACACTTTTTTGAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
643 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
12899577 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATGCCTTCT-GAAAAA
708 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCTAAAAAAA
* *
12899640 -TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
772 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
12899704 CCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAA
837 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
12899745 TTTACAAGCGATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
** *
12899810 CCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGACGTTATGGCCGCCCGCCTGCCCG
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTA--G-TGCCCGCCT----G
* * * *
12899875 CCCTCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCTC-GATCTAAGAT----TGGGC
124 CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGATGGAC
* ** * ** ** * *
12899935 CA-AACT-G-A-AGGTTGCAATAGTAGGATCGATAGCACGCAGAGGGGGGCTCGGTCGATCCCCG
188 GAGGGCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG
* ** * * ** *
12899996 GCTTTTGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCACACGCTTGTTTCGTGGGTTGGCTTAGG
253 ACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
*
12900061 CATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACC
318 CATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-TC----A--AGACC-G---
* * * * * * *
12900126 AAGGGTTGCGGCAGCACTTGCCGGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGCCGAGGC
359 -AGGGTTACGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
* * * *
12900191 ACCATCACCGGAGCATCGTCGGAGAACCTGACTGGCGACATTGGGGTTCCGACAATCGGGGGGTC
423 ACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
*
12900256 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCC
488 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
12900321 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
553 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
12900386 GTAGCCATTAAAGTGTCTGAAATGGGGATACATTTTTCAAATGGTCACAAAATCTTGTACACTTC
618 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
12900451 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTG
683 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
12900516 GGGCCAAAAGTCCTTCTGAAAAAATTTT-AAAAATCCCGAACCATAAAAAGTTTCAAAAATCATG
748 GGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
12900580 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
813 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
12900645 A
878 A
** *
12900646 TTTACAAATGATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
12900711 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG-CGAACGTTA-TACCCGCCTGCCTGCC
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-ACGTTAGT----GCCCGCCTGCC
* * ** *
12900774 CACCCGCTCAATTTGTCAATTAGG-TTAGGCATATGGAGTTCATTCCCAGTCTCAA-AT----TG
126 CACTCG-T---TTCGTCGGTT-GGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGATG
* * * * * *
12900833 GA-TAGGACT-G-A-AGGTTGTGGTAGTAGGATCGGCAGCACGTAGAGGGGGACCCAGTCGATCC
185 GACGAGGGCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* * * ** *
12900894 GCGGCTTGCGCATCCCGCCCCTCTGG-CTGGCTGAGCGCCCACACGCTTGTTTCGTGGGTTGGCT
250 CCGACTTGCGCATCCCGCCCCTCTGGTC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACT
12900958 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTG
314 TAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-TC----A--AGAC--
** * *
12901023 GACTGAGGGTTACGATAGCACATGAC-GGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGTC
357 --C-GAGGGTTACGGCAGCACATG-CTGGGCTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTC
* * * * *
12901087 GGGGTACCATCACCGGAGCATCATCGGAGAACCTGACTGGCGGCATTGAGGTTCCGACGATCAGG
418 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGG
*
12901152 GGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
483 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
12901217 TATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGT
548 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
12901282 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTAC
613 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
12901347 ACTTCG-GATTTTTAGCTGAACTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
678 ACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* **
12901411 AGTTTGGGGCCAAAAGTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
742 AGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
12901476 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATT
807 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
12901541 GTATGAA
872 GTATGAA
* * ** *
12901548 TTTACAAGTGATAAAAATGGCTTTGAAATGCGGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
12901613 TCCTATCGATCCACGGCTTGCGTATCCCATCTCTCTGGTCGACGTTA-TGCCCACCTGCCCACTT
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCGCCTGCCCACTC
*
12901677 GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAAGGC
131 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGAC-G-AGG-
*
12901742 AGTCTAAGATCAGACAGGATTGAAGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACTCG
192 -G-C-----T-AG-CA-G---G--GGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * ** *
12901807 GTCGATCCCCGACTTGCGCATCCCGCCCATTTGGTCGGTTGAGCACCCGCACGCTTGTTTCATGG
242 GTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* * *
12901872 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAAGACCGAGGGTTATGGCAT
307 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAGACCGAGGGTTACGGCAG
* *
12901936 CACATG-TCGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAG
372 CACATGCT-GGGCTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
* * *
12902000 CATCGTCGAAGAACCTGACTAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTACG
436 CATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG-GGGGTGTGCG
*
12902065 CACATGATGGGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
500 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
12902130 CGAGAAATCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAA
565 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
12902195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCT
630 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
12902260 GAATTTTTTTGTACATGCCAAAAAAAATGCAAAGATCATGTCTACCAAGTTCGGGGCCAAAAATC
695 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* * *
12902325 CTTCCAAAAAAATTTTAAAAAATCCTGATCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
760 CTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
** * * * *
12902390 TGAGTCGTCTTTTCTTAAAACTTCACGTGAAGGCTTACGGGACCATTGTAGGAA
825 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
12902444 TTTACAAGCCG-TAAAAATGGCATTGTCATGTAGAAATATAAAGATGTGCTTAAACCAACCTACC
1 TTTACAAG-CGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
12902508 ACCTTATCAATCCAGGGCTTGCGCATCCCGTCTCTCTGGCCGGCG-TAGTGCCCACCCGCCCAAC
65 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCGCCTGCCC-A-
*
12902572 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA---ACCA-
128 --CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGACGAG
* * * ** * ** * *
12902632 GACT-G-A-GGGTTCTGACAACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCT
191 GGCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACT
*** * * * * * *
12902694 TGTTTATCCTGCCCCTCTAGTCGGTTGAGTGCCCGTACGCTCATTTCGCGGTGCTTTGACTTAGG
256 TGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGG-G--TTGACTTAGG
* * * * * * *
12902759 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGACGGTTGCGACAGCACATGCAGGG
318 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
12902823 CTCCAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACAATCGTCGGAGCATC-CCGGAGA
383 CTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
12902887 ACCTAACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-GTTGCGCACATGATGTGC
448 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG-TGCGCACATGATGTGC
12902951 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-GAACTCACA
512 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12903015 CCCCCTTAAGGAGCATTTTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAA
577 CCCCCTTAAAGAGCA--TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12903080 TGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTGAGCT-AATTTTTTT
640 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * * *
12903144 ATGCATGCCAATACAAATACAAGGATCATGTCTAACAAGTTTGGGGCTAAAACTACTTCCT-AAA
705 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-CTAAAA
* *
12903208 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
769 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
12903273 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
834 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * **
12903318 TTTACAAGCAATAAAAATGGCATT-GCAATGGAGAAATATGAAGACATGCCTAAACCCACCTACC
1 TTTACAAGCGATAAAAATGGCATTGGC-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
12903382 ACCCTATCGATCCACGGCTTGCACATCCCGTTTCTCTGGCCGACG-TAGTGCGCCCGTCC-ACCC
65 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGT--GCCCG-CCTGCCC
* * * * *
12903445 GCTCGTTTTGTTGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATC-G--GG-CCA-G
127 ACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGACGAGG
* * ** * * * * * * ** *
12903505 AC-CG-A-GGGTT-ACAGTAGCAGGATTGGTAGCATGCAGAAGGGGACCC-GACTGATCTACGGC
192 GCTAGCAGGGGTTGTGA-TAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGAC
* ** * ** * *
12903565 TTGCGCATCCCGTCTTTCTGGCCGATTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCA
255 TTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* *
12903630 TACAGAGTTCATTCCCAGTCTAAGCATACAGACATTCCCAGTCTAAGATCGGACCAAACTAAGGG
320 TACGGAGTTCATTCCCAGTCTAAG-AT-CAG--------A-TC--A-A---GA-C---C-GAGGG
* * * * * *
12903695 TTACAGTAGCACATGCTAGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACCAT
363 TTACGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * * * *
12903760 CGTCGGAGCATCGTCGGAGAACTTGACCGACAGCATTGGGGTTCTGGCGATCGAGTGGGCCAGGG
428 CGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGG
* * ** *
12903825 GGGTGTGCACACATGATCTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCTCCCTATCCCTC
491 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
12903890 ATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
556 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * * * *
12903955 GCCATTAAAGTTTCTAAAATGGGGACACGTTTTTCAAATGGTCACAAAATATTATACACTTCGAT
621 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* ** * *
12904020 TTTTTAGCTGAATTTTTTTGTGCCTGCCAACTAAAATACAAGGATCACGTCTACAAAGTTTAGGG
686 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
12904085 CCAAAAATCTTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAACAAGTTTCAAAAATCGTG-AA
751 CCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* * *
12904149 AATAG-AAAT-AGTTCTTTCTTGCCATG-AACTTCACGTGACGGCTTCAGGGACCATTTGTATGA
816 AATAGAAAATGAG-TC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TTGTATG-
12904211 AA
877 AA
* * * * * *
12904213 TTT-CAAAGCCAT-AAAATGGCTCTTGGCACGCAGAAATCTGAAGATGTGCCCAAACCCAACTAA
1 TTTAC-AAGCGATAAAAATGGC-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT-A
*
12904276 CCACCCTATCGATCCACGGCTTGCGC-TCCCGTCTCTCTGGCCGAC-ATAGTGCCCGCCTGCCCG
63 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCGCCTG--C-
* * * * *
12904339 TCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGAC
125 -CCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGAC
** * * * * * * * ** *
12904404 -----C--G-A-GGGTTACGACAGCAGGACCGGCAGCATGTAGAAGGGCACCCAATCAATCCCCG
188 GAGGGCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG
* * *
12904460 ACTTGCACATCTCGCCCCTCTGGGCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
253 ACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* *
12904525 CATATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATC
318 CATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-TC--A-A---GA-C----C
* * ** * * * * *
12904590 GAGGGTTGCAGCAGCACATGCTGGAATCGAGCATGAGTTGGTGTCGTATTTTTCTTCATCGGGGC
358 GAGGGTTACGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
* * * * * *
12904655 ACCATCGCTGGAGCATTGCCGGAGAACCTGACCGGCGGCATTAGGGTTCTGACGATCGGGGGGGT
423 ACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGG-
* *
12904720 CGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAA
486 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-A
* * *
12904784 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTG
550 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
12904849 TCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACAC
615 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
12904914 TTCGAGTTTTTAGCTGAATTTTTTTGTGCTTACCAAAAAAAATACAAGGATCACGTCTACCAAGT
680 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * **
12904979 TTGGGGCCAAAACTCCATTC-AAAAAGATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAAT
745 TTGGGGCCAAAAATCC-TTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * **
12905043 CATGAAAAATAGAAAATGAGTTC-TCTTGCCATGAAACTTCACCTGAAACCTTAAGGGACCATTG
809 CGTGAAAAATAGAAAATGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
12905107 TATGAA
873 TATGAA
* * *
12905113 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
12905178 CCCTATCAATCCACGGCTTTCGTATCCCATCTCTCTGGCCAACGTAGTGCCCGCTCGCCCGTCCG
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT--T---AG-T-G--C--CCG
* * * * *
12905243 CCTGCCCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGTTCAGA--
120 CCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATG
* * * * * *
12905306 -AC--GGGCT-G-A-GGGTTGCGATAGCAGGATCAGCAGCACACAGAGGGGGACCCGATCCATCC
185 GACGAGGGCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* * * * * * *
12905365 CCGACTTTCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCTGTATGCTCGTTTCATGGGTTAACTT
250 CCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
* * * * * * *
12905430 AGGCATACGGACTTCATTCCCAGTCTAAGATAAGATCGA-ACCAAGGGATGCGGTAGCACATGCT
315 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAGACCGAGGGTTACGGCAGCACATGCT
* * * * * * *
12905494 GGGCTCGGGCATA-TGCTGGTGTCGTATTTTTCTTCATCGAGGCACCATCGTCGGAGCATGGCCG
380 GGGCTCGAGCA-AGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCG
* * * *
12905558 GAGAACCTGA-TCAGTGGCATTGCGATTCC-AGCGATCGGGGGGGCCGAGGGGGTGTGCGCACAT
444 GAGAACCTGACT-GGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCG-GGGGGTGTGCGCACAT
* * * *
12905621 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTAACCCTCATCAAACCTCAAGA
505 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * ** * * ** *
12905686 ACTCACACCCCATTGACTTAG-GCATACGGAGTTCATTTCCAATGTAAGATCGGAGTGAACCGAG
570 ACTCACACCCCCTT-A--AAGAGCAT-TTGAGAT--TTTAC-A-G---G-TTTG-CTG--CC-A-
* ** * * * * * * *
12905750 GGTTGCGGCAGCACATATTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTTCGCGGGCACATCG
618 -GTAGC--CATTA-A-AGT-GTCT-GA--A-ATG--GG-GAC--ACTTTTTT------CAAATGG
* * * * ** ** ****** ** * ** *
12905815 TC-GAGAA-CCTG-ACCGACCGGCATT-GGGGGTTCCGCGATCGGGGGGGCTAGGGGTGTGCCAC
662 TCACAAAATCTTGTA-C-A----C-TTCGAGTTTTTAGC--T--GAATTTTTTTGTGCATGCCAA
** ** ** * * ** * * *** * ***
12905876 ATGATGTGGTGATGGGTGCTGGTACTTGGCCCTTA-TATT--GGCC-CCTATCC--CTCATCCAA
716 AAAAAAT--ACAAGGAT-CACGT-C-T--ACC-AAGT-TTGGGGCCAAAAATCCTTCTAAAAAAA
* ** * * * * * * * * * *
12905935 CTTCGAGAACTCAC-ACCCCTTAAAGAGCATTTC--ATAT--T------T--TACA-G-GT-TTG
772 TTTTAAAAAATCCCGA-ACCGTAAAAAG--TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT-
** * * ** *** * * * *
12905984 C-TGCCA-GTAGCCTTTAAAGTGTTGAAAT-GGGGA-CACTTTTTTCAAA
833 CTTGCCATG-AAAC-TTCACGTGAAGGCTTAAGGGACCA-TTGTAT-GAA
* * * * ** * *** * * * *** **
12906030 TGGTCACAAAATCTTATACACTTGGAATTTTTA-GCTGAATTTTTTTG-TGCATGCC--AACAAA
1 T--TTAC--AAGC-GATAAAAATGGCATTGGCATGCAGAAATATGAAGATG--TGCCTAAACCCA
** * * * * * * *** *** ** *
12906091 AATACAAGGATCACT-TCTA-CCA-AGTTTGGGGCCAAAAC-TC-CAT-TCGAAAAGATTTTAAA
59 CCTAC---CA-CCCTATCGATCCACGGCTT-GCG-CATCCCGTCTC-TCT-G-GCCGACGTT-AG
**** *** * * * **** ** * * *
12906150 AAATC-CCAAACCATTAAAAGTTTCAAAAATC-G-TGAAAAATACAAAAC-GAGTTGTATGAATT
114 TGCCCGCCTGCCCACT---CGTTTC----GTCGGTTGGCTTAGGC-ATACGGAGTT-CAT---TC
** * * * * * *** * * *
12906211 GTATGAATTTACAAGCCATAAAAATGG-C-ATTGGC-ACCCA-GAAATATGA-AG-ATG-T-GCC
167 CCA-G--TCT--AAG--AT-CAGATGGACGA-GGGCTA-GCAGGGGTTGTGATAGTAGGATCGGC
* * ****** ** * * * * * ** * * * *
12906268 TA-AACCCA-CCTACCACCCTATTGATCCACGGCTTTCGTATCCCATCTCTTTGGCCAGCGTAGT
222 -AGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTC-G-G--CT
* * * * * *
12906331 GCCAGCCCGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTTATTCCCAGT
282 G--AG--CG--C-CC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * ** * * * ** * *
12906396 CTAAGATCAGA-CCATACCGAGGGTT---GCA--ACA-GCAGGATTAGCAGCACGCAGAGGGGGA
339 CTAAGATCAGATCAAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG-AGCAAG-TGCTGGTGT
** * ** * * ** * * * * *
12906454 C-C--TGATCGATCCCCGGCTTGC-GCATC-CC-GCCCAT--TTGGCCG--GCTGAGC-GCCCGC
402 CGCATTTTTC-TTCGTCGG--GGCACCATCGCCGGAGCATCGTCGG-AGAACCTGA-CTGGCGGC
* ** * ** * *** ** * * ** * * * ** *
12906508 A-CGCTCGTT---TCG-T-GGGTTGAC-TTAGGCATACGGAGTTCAT-TCCCA-GTCTAAGATAG
462 ATTG-GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT--GCT-G
* ** * * * *
12906564 G-AC-CGAACCTTATATTGGCCACCTAACCCTCATCAAACCTTGACAACTCACACCCCCTTAAAG
523 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
12906627 AGCATTTGAGATTTTACAAGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
588 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* ** * * *
12906692 TTCAAGTCTTCACAAAATCTTGTACACGTCGAGTTTTTGGCTGAATGTTTTTGTGCATGCCAAAA
653 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * * ** *
12906757 TAAATACAACGG-TCAAGTCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAA
718 AAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAA
* * ** * * *
12906821 TCCCGAACTGCAAAAAGGATCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
782 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
* *
12906886 TCACGTTAAGGGTTAAGGGACCATTGTATGAA
847 TCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
12906918 TTTACAAGCCATAAAAATGGCATTGCCAAGCAGAAATATGAAGATGTGCCTTAACCCACCTACCA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
12906983 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACG-TAGTGCCCGTCCACCTGCCC
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCG----CCTG--C
* ** * * * *
12907047 GCCAGCTCGTTTCATCAATTAGCTTAGGCATGCAGAGTTCATTCCTAGTCTAAGATCAGAT--A-
125 -CCA-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGAC
* * ** * * * * **
12907109 G-GAG-T-G-A-GAGTT-ACAGTAGCAGAATCAGCAGCACGTAGAGGGGGACCCGACCGATCCCC
188 GAGGGCTAGCAGGGGTTGTGA-TAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
* ** * * * * * * * *
12907168 GGCTTGCTTATCCCACCCCTCTGGCCGGTTGAGTGCCCGTATGCTCGTTTCGTGGGTTGACTTAC
252 GACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* ** * *** **
12907233 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGATCGAGGGTTACAATAGCACATATTGG
317 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * * * * **
12907297 GCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGAGGCACCATCACCGGAGCATCACCGGAG
382 GCTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
12907362 AACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGAG
447 AACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
12907427 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTCAAGAACTCAT
511 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12907492 AACCCCTTAAAGTGCATATGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
576 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12907557 GGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGGCTG-ATTATTGT
641 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTT
* * * * *
12907621 G-GCCTGCC-AACAAAATACAAGAATCACATCTACCCAACG-TTGGGG-CAAAAACTCCTTTCGA
705 GTGCATGCCAAAAAAAATACAAGGATCACGTCTA-CCAA-GTTTGGGGCCAAAAA-TCC-TTCTA
** * *
12907682 AAAAAATTTTCCAAAATCTCCGAAACCGTAAAAAGTTTCAAAAAATCATGACAAAATAAGAAAAC
766 AAAAAATTTTAAAAAATC-CCG-AACCGTAAAAAGTTTC-AAAAATCGTGA-AAAAT-AGAAAAT
* *
12907747 GAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAAGGACCATTGGTATGAA
826 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAA
* * * *
12907801 TTTAAAAGCCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTACACCCACCTACC
1 TTTACAAG-CGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
12907866 ATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG-TAGTGCCTGCCCGCCCACC
65 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCGCCTGCCCA--
* * * *
12907930 CGCCTACTGATTTCGTCAGTTAGCTTAGGCATATGGAGTTCATTCCCAATCTAAGAT----TGGA
128 ---CT-C-G-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGA
* * * * * * * ** * *
12907991 CCA-GAC-CG-A-GGGTTGAGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGCTCCCT
187 CGAGGGCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
* * *
12908052 GACTTGCGCATCCCGCCCCTCTGG-CTAGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTA
252 GACTTGCGCATCCCGCCCCTCTGGTC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
12908116 GGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
316 GGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-TC----A----A---GA
* * * * * * * *
12908181 CCGAGGGTTGCAGAAGCACATGCTGGGCTCGGGCATGTTCTGGTGCCGCATTTTTCTTCGTCAGG
356 CCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGG
* * * * * * *
12908246 GCACCATCGTCAGAGCATCGTCGGAGAACCTGA-TCGACGACATTAGGGATCC-AGCGATTGGGG
421 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACT-GGCGGCATTGGGGTTCCGA-CGA-TCGGG
12908309 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
483 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
12908374 TAT-CCTCCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
548 TATCCCT-CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
12908438 CTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTA
612 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
12908503 CACTTCGAGTTTTTAGCTGAATTGTTTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCA
677 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * **
12908568 AGTTTAGGGCC-AAAACCCATTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-TTTTGAA
742 AGTTTGGGGCCAAAAATCC-TTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
12908630 AATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
806 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
12908695 TGTATGAA
871 TGTATGAA
* * * * *** **
12908703 TTCACAAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTACCTAAAGTTACCTATGA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * ** *
12908768 CCCTATCGATCCACGGCTTGGGTATCCCATCTCTCAGGCCAGCCTAGTGCCCGCTTGCCCACCTG
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GAC--GT--TAG--TGCCCGCCTG
* * * **
12908833 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATGGATC
124 CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGA-C
* * * * * * * **
12908898 GAGGGTTA-C----G--G-CA-A-CAGGATCAGCAGGACACAGACGGGGACCCGACCGATCCCCG
188 GAGGGCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG
* * * * *
12908953 GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
253 ACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * * *
12909018 CATACGGAGTTCATTCCCAGTCTAAGACCA-A-CCAGACCAAGGGTTGCGGTAGCACATGCTAGG
318 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
12909081 CTCGGGCATGTGCAGGTTTCCGCATTTTTCTTCGTCGTGGCACCATCGTCGGAGCA---TC----
383 CTCGAGCAAGTGCTGGTGT-CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
*
12909139 -A-C---C-GGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
447 AACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATG
* ** *
12909198 TGTGATGGGCACTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTC
509 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12909263 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAA
574 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12909328 ATGGCGACAC---TTT----TGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTT
639 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** *
12909386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTCTGAAA
704 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAA
** ** * *
12909451 AAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT-GTC
769 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
*
12909515 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
834 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
12909560 TTTACATGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACGCACCTACCA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
12909625 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCG-TAGTGCCCGCCCGCCCGTCC
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCGCCTG--C--CC
* * *
12909689 GCTCGCTAGTTTCATCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATC----GGAC
127 ACT--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGAC
* * * * * * * ** * * ** *
12909750 CA-GAC-CG-A-GGGTTGCGGTAGCAGGATCGACAGCATACAGAGGGAGACCTGACCGATCCCCA
188 GAGGGCTAGCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG
* * * * *
12909811 ACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCTTGGGTTGACTTAGG
253 ACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
*
12909876 CATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCAGACTGGACC
318 CATACGGAGTTCATTCCC-A-GT---C-TA---AG---------A-TC-A-GATCA-A---GACC
* * * ** ** * ** ** *
12909941 GAGGGTTGCGACAACACATGCTACGCTCGAGCTTGTGCTGGTGCCATATTTTTCTTCCCCGGGGT
358 GAGGGTTACGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
* * * *** *
12910006 ACCAT---C---G---C--CGGAGAACCTGACCGACGGCATCGACATTCCGATGATCGGGGGGGT
423 ACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGG-
* * *
12910060 CGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTAT
486 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
12910125 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTGC
551 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
12910190 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACT
616 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
12910255 TGGAGTTTTTAGCTGAATTTTTTTGTGCGT-CCAAAAAAAATACAAGGATCACATCTACCAAGTT
681 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * ** * **
12910319 TGGGCCCAAAACA-CTTTCTGAAAAAATTTTAAAAAATCCTGAACCACAGAAAGTTTTGAAAATC
746 TGGGGCCAAAA-ATCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
12910383 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTA
810 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
12910448 TGAA
875 TGAA
* * *
12910452 TTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACACACCTACCA
1 TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
12910517 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACG-TAGTGCCCGCCCACCCGCCC
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCG----CCTG---
* * * *
12910581 TCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGA
124 -CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-GGA
12910646 CCGAGGG
187 -CGAGGG
12910653 TTACGGCAGC
Statistics
Matches: 8810, Mismatches: 1487, Indels: 1192
0.77 0.13 0.10
Matches are distributed among these distances:
849 8 0.00
851 3 0.00
852 2 0.00
853 9 0.00
854 1 0.00
855 2 0.00
856 95 0.01
857 218 0.02
858 138 0.02
859 61 0.01
860 6 0.00
861 24 0.00
862 2 0.00
863 157 0.02
864 15 0.00
865 15 0.00
866 12 0.00
867 7 0.00
868 4 0.00
869 148 0.02
870 10 0.00
871 42 0.00
872 142 0.02
873 277 0.03
874 425 0.05
875 177 0.02
876 177 0.02
877 185 0.02
878 16 0.00
879 27 0.00
880 23 0.00
881 18 0.00
882 254 0.03
883 56 0.01
884 315 0.04
885 208 0.02
886 43 0.00
887 13 0.00
888 26 0.00
889 20 0.00
890 3 0.00
891 109 0.01
892 336 0.04
893 75 0.01
894 177 0.02
895 362 0.04
896 523 0.06
897 186 0.02
898 24 0.00
899 297 0.03
900 850 0.10
901 900 0.10
902 255 0.03
903 63 0.01
904 18 0.00
905 19 0.00
906 11 0.00
907 17 0.00
908 181 0.02
909 36 0.00
910 311 0.04
911 23 0.00
912 35 0.00
913 9 0.00
914 1 0.00
915 7 0.00
916 18 0.00
917 27 0.00
918 15 0.00
919 15 0.00
920 17 0.00
921 152 0.02
922 34 0.00
923 59 0.01
924 19 0.00
925 2 0.00
926 19 0.00
927 1 0.00
928 8 0.00
929 27 0.00
930 31 0.00
931 16 0.00
932 16 0.00
933 10 0.00
934 8 0.00
935 12 0.00
936 13 0.00
937 10 0.00
938 9 0.00
939 2 0.00
940 1 0.00
941 3 0.00
942 57 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
TTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTAGTGCCCGCCTGCCCACTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGACGAGGGCTA
GCAGGGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGC
ATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGATCAAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCA
AGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACT
GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAA
Found at i:12904144 original size:895 final size:893
Alignment explanation
Indices: 12899186--12905696 Score: 6505
Period size: 900 Copynumber: 7.3 Consensus size: 893
12899176 GTTGACTTAG
* * * * * * * * *
12899186 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGTACATGCTGGG
1 GCATAC-GAGTACATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCACATGCTAGG
* ** *
12899251 CT-TAGGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCTCCGGA
65 CTCGA-GCATGTGCTGGTGTC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * *
12899314 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTACACACATGATGT
128 GAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* ** *
12899379 GCGATGGGTGCTGTTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12899444 CACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCCGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12899509 TGGGGACACTTTTTTGAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
12899574 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCTGAAA
387 GTGCATGCCAA-TAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTACTTTCTAAAA
* * *
12899638 AA-TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAGTC-TCT
*
12899702 TGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCGATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12899766 TTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
579 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * **
12899831 GCATCCCACCTCTCTGGCCGACGTTA-TGGCCGCCCGCCTGCCCGCCCTCTCGTTTCGTCAGTTG
644 GCATCCCGTCTCTCTGGCCGACG-TAGT-GCCGCCCG--T--CCGCCCGCTCGTTTTGTTGGTTG
* ** * * * * * * * *
12899895 GCTTAGGCATACGGAGTTCATTCTC-GATCTAAGATTGGGCCAAACTGAAGGTTGCAATAGTAGG
703 GCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGG
* ** * * ** * ** * * * *** * * *
12899959 ATCGATAGCACGCAGAGGGGGGCTCGGTCGATCCCCGGCTTTTGCATCCCGCCCCTCTAGTCGGC
767 ACCGGCAGCATGCAGAAGGGCACCCAATCAATCCACGACTTGCACATCCCGCCCCTCTGGCCGAC
* ** * * * *
12900024 TGAGCGCCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
832 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAA
* * * * ** * * **
12900086 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACTTGCCGGG
1 GCATAC-GAGTACATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCACATGCTAGG
* * * * * ** *
12900151 CTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCACCGGAGCATCGTCGGAGA
65 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
12900216 ACCTGACTGGCGACATTGGGGTTCCGACAATCGGGGGGTC-GGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
12900280 GATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
12900345 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12900410 GGGATACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
12900475 GCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGT-CCTTCTGAAAAA
389 GCATGCCAATAAAA-TACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTACTTTCT-AAAAA
** *
12900539 ATTTT-AAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAGTC-TCTT
*** *
12900603 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAATGATAAAAATGGCT
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12900668 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
580 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * ** ***
12900733 CATCCCGCCTCTCTGG-CGAACGTTA-TACCCGCCTGCCTGCCCACCCGCTCAATTTGTCAATTA
645 CATCCCGTCTCTCTGGCCG-ACG-TAGT----GCC-GCCCGTCCGCCCGCTCGTTTTGTTGGTT-
* ** * * * ** ** *
12900796 GG-TTAGGCATATGGAGTTCATTCCCAGTCTCAA-ATTGGA-TAGGACTGAAGGTTGTGGTAGTA
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCA-GACCGAGGGTTACGACAGCA
* * * * * * * * * * *
12900858 GGATCGGCAGCACGTAGAGGGGGACCCAGTCGATCCGCGGCTTGCGCATCCCGCCCCTCTGGCTG
765 GGACCGGCAGCATGCAGAAGGGCACCCAATCAATCCACGACTTGCACATCCCGCCCCTCTGGCCG
* * ** * * *
12900923 GCTGAGCGCCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAA
* * * * * * *
12900987 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTAC-GATAGCACATGAC-G
1 GCATAC-GAGTACATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAG-CAGCACATG-CTA
* * * * ** **
12901050 GGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCATCGGA
63 GGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * *
12901115 GAACCTGACTGGCGGCATTGAGGTTCCGACGATCAGGGGGCC-GGGGGGTGTGCGCACATGATAT
128 GAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
12901179 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12901244 CGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12901309 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-GATTTTTAGCTGAACTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTT
* * * * *
12901373 TATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGT-CCTTCTAAA
386 TGTGCATGCC-AATAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTACTTTCT-AA
* **
12901437 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
449 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAGTC-T
* **
12901502 CTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * * *
12901567 GCTTTGAAATGCGGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTT
577 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
12901632 GCGTATCCCATCTCTCTGGTCGACGTTA-TGCC-CACC-T--GCCCACTTGTTTCGTCGGTTGGC
642 GCGCATCCCGTCTCTCTGGCCGACG-TAGTGCCGC-CCGTCCGCCCGCTCGTTTTGTTGGTTGGC
*
12901692 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAAGGCAGTCTAAGATCAGAC
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT----C---A--G-A--C---C--AGA-C---C
** * * * * * * * ** * *
12901757 AGGATTGAAGGTTGTGATAGTAGGATCGGCAGCACGCAGAGGGGGACTCGGTCGATCCCCGACTT
749 --GA--G--GGTTACGACAGCAGGACCGGCAGCATGCAGAAGGGCACCCAATCAATCCACGACTT
* * * * ** * ** * *
12901822 GCGCATCCCGCCCATTTGGTCGGTTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATA
808 GCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* *
12901887 CGGAGTTCATTCCCAGTCTAA
873 AGAAGTTCATTCCCAGTCTAA
* * *
12901908 G-AT-C-AG---------A--C--A-A---GACCG-A--G-GGTTATG--GCATCACATG-TCGG
1 GCATACGAGTACATTCCCAGTCTAAGATCGGACCGAACTGAGGGT-TGCAGCAGCACATGCT-AG
* * ** * *
12901946 GCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAAG
64 GCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
12902011 AACCTGA-CTAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTACGCACATGATGG
129 AACCTGACCGA-CGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
12902075 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12902140 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12902205 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * * * * * *
12902270 GTACATGCCAAAAAAAATGCAAAGATCATGTCTACCAAGTTCGGGGCCAAAAATCCTTCCAAAAA
387 GTGCATGCC-AATAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTACTTTCTAAAA
* * *
12902335 AATTTTAAAAAATCCTGATCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAGTC-TCT
** * * * * *
12902400 TTTCTTAAAACTTCACGTGAAGGCTTACGGGACCATTGTAGGAATTTACAAGCCGTAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * * * *
12902465 ATTGTCATGTAGAAATATAAAGATGTGCTTAAACCAACCTACCACCTTATCAATCCAGGGCTTGC
579 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * *
12902530 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCAACCGCTCGTTTCGTCGGTTGGCTTA
644 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGTCCGCCCGCTCGTTTTGTTGGTTGGCTTA
* * *
12902595 GGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTT-CTGACAACAGGATCG
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTAC-GACAGCAGGACCG
* * * * * * * * * *** * * * **
12902658 ACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTTTATCCTGCCCCTCTAGTCGGTTGAG
771 GCAGCATGCAGAAGGGCACCCAATCAATCCACGACTTGCACATCCCGCCCCTCTGGCCGACTGAG
* * *
12902723 TGCCCGTACGCTCATTTCG-CGG-TG-CTT-----T--G-A---C-TT---AG-----
836 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAA
* * *
12902758 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGACGGTTGC-GACAGCACATGC-AG
1 GCATAC-GAGTACATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAG-CAGCACATGCTA-
* *
12902821 GGCTCCAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACAATCGTCGGAGCATC-CCGGA
63 GGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
12902885 GAACCTAACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGT-TGCGCACATGATGT
128 GAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
12902949 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-GAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12903013 CACCCCCTTAAGGAGCATTTTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGA
257 CACCCCCTTAAAGAGCA--TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12903078 AATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTGAGCT-AATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
12903142 TTATGCATGCCAATACAAATACAAGGATCATGTCTA-ACAAGTTTGGGGCTAAAACTACTTCCTA
385 TTGTGCATGCCAATA-AAATACAAGGATCACGTCTACA-AAGTTTGGGGCCAAAACTACTTTCTA
* *
12903206 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
448 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAGTC-
*
12903271 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAAT
511 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * **
12903336 GGCATT-GCAATGGAGAAATATGAAGACATGCCTAAACCCACCTACCACCCTATCGATCCACGGC
576 GGCATTGGC-ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
12903400 TTGCACATCCCGTTTCTCTGGCCGACGTAGTG-CGCCCGTCCACCCGCTCGTTTTGTTGGTTGGC
640 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGTCCGCCCGCTCGTTTTGTTGGTTGGC
* * * * *
12903464 TTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGGCCAGACCGAGGGTTAC-AGTAGCAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-CAGCAGGAC
* * * * * * * * * ** *
12903528 TGGTAGCATGCAGAAGGGGACCCGA-CTGATCTACGGCTTGCGCATCCCGTCTTTCTGGCCGATT
769 CGGCAGCATGCAGAAGGGCACCCAATC-AATCCACGACTTGCACATCCCGCCCCTCTGGCCGACT
* *
12903592 GAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAA
833 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA-AGAAGTTCATTCCCAGTCTAA
* * * *
12903653 GCATAC-AG-ACATTCCCAGTCTAAGATCGGACCAAACTAAGGGTTACAGTAGCACATGCTAGGC
1 GCATACGAGTACATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCACATGCTAGGC
* * *
12903716 TCGAGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAA
66 TCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * * * *
12903781 CTTGACCGACAGCATTGGGGTTCTGGCGATCGAGTGGGCCAGGGGGGTGTGCACACATGATCTGC
131 CCTGACCGACGGCATTGGGGTTCTGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGC
** *
12903846 GATGGGTGCTCATACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAAA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12903911 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12903976 GGGACACGTTTTTCAAATGGTCACAAAATATTATACACTTCGATTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12904041 GCCTGCCAACTAAAATACAAGGATCACGTCTACAAAGTTTAGGGCCAAAAAT-CTTTCTGAAAAA
389 GCATGCCAA-TAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTACTTTCT-AAAAA
* * *
12904105 ATTTTAAAAAATCCCAAACCGCAACAAGTTTCAAAAATCGTG-AAAATAGAAATAG-TTCTTTCT
452 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA-AGAGTC--TCT
* *
12904168 TGCCATG-AACTTCACGTGACGGCTTCAGGGACCATTTGTATGAAATTT-CAAAGCCAT-AAAAT
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TTGTATG-AATTTAC-AAGCCATAAAAAT
* * * *
12904230 GGCTCTTGGCACGCAGAAATCTGAAGATGTGCCCAAACCCAACTAACCACCCTATCGATCCACGG
576 GGC-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGG
* * * * ** *
12904295 CTTGCGC-TCCCGTCTCTCTGGCCGACATAGTGCCCGCCTGCCCGTCCGCTCGTTTCATCGGTTG
639 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGTCCGCCCGCTCGTTTTGTTGGTTG
* * *
12904359 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTACGACAGCAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGA
* * * * *
12904424 CCGGCAGCATGTAGAAGGGCACCCAATCAATCCCCGACTTGCACATCTCGCCCCTCTGGGCGGCT
768 CCGGCAGCATGCAGAAGGGCACCCAATCAATCCACGACTTGCACATCCCGCCCCTCTGGCCGACT
*
12904489 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
833 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAA
* * *
12904550 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTTGCAGCAGCACATGCT-G
1 GCATAC-GAGTACATTCCCAGTCTAAGATCGGACCGAACT-GAGGGTTGCAGCAGCACATGCTAG
* * * * * *
12904613 GAATCGAGCATGAGTTGGTGTCGTATTTTTCTTCATCGGGGCACCATCG-CTGGAGCATTGCCGG
64 G-CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGG
* * * *
12904677 AGAACCTGACCGGCGGCATTAGGGTTCTGACGATCGGGGGGGTCGGGGGGGTGTGTGCACATGAT
127 AGAACCTGACCGACGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGAT
*
12904742 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAATCCCTCATCAAACCTTGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT-ATCCCTCATCAAACCTCGAGAACT
* * * *
12904807 CACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCAATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12904872 AATGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
12904937 TTGTGCTTACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTC-AA
385 TTGTGCATGCC-AATAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTACTTTCTAA
* *
12905001 AAAGATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTC
449 AAA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAG-TC
* **
12905066 TCTTGCCATGAAACTTCACCTGAAACCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
511 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12905131 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCT
576 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
12905196 TTCGTATCCCATCTCTCTGGCCAACGTAGTGCCCGCTCGCCCGTCCGCCTGCCCGCTCGTTTTGT
641 TGCGCATCCCGTCTCTCTGGCCGACGTAGT----GC-CGCCCGT---CC-GCCCGCTCGTTTTGT
* * * * * * * *
12905261 TGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGTTCAGAACGGGCTGAGGGTTGCGATA
697 TGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACA
* * ** * * * * * * *
12905326 GCAGGATCAGCAGCACACAGAGGGGGACCCGATCCATCCCCGACTTTCGCATCCCGCCCCTCTGG
762 GCAGGACCGGCAGCATGCAGAAGGGCACCCAATCAATCCACGACTTGCACATCCCGCCCCTCTGG
* * * * * * * * * * *
12905391 TCGGCTGAGCGCCTGTATGCTCGTTTCATGGGTTAACTTAGGCATACGGACTTCATTCCCAGTCT
827 CCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCT
12905456 AA
892 AA
* * * *
12905458 G-ATA--AG---------A-TC---GA----ACC--A---AGGGATGCGGTAGCACATGCTGGGC
1 GCATACGAGTACATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCACATGCTAGGC
* * * * * *
12905498 TCGGGCATATGCTGGTGTCGTATTTTTCTTCATCGAGGCACCATCGTCGGAGCATGGCCGGAGAA
66 TCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * * *
12905563 CCTGATC-AGTGGCATTGCGATTC-CAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
131 CCTGACCGA-CGGCATTGGGGTTCTGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
12905626 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTAACCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCA
12905691 CACCCC
257 CACCCC
12905697 ATTGACTTAG
Statistics
Matches: 4860, Mismatches: 565, Indels: 390
0.84 0.10 0.07
Matches are distributed among these distances:
850 1 0.00
851 2 0.00
852 1 0.00
854 2 0.00
855 2 0.00
858 2 0.00
859 1 0.00
862 1 0.00
863 2 0.00
865 2 0.00
867 1 0.00
868 1 0.00
870 3 0.00
871 9 0.00
872 147 0.03
873 109 0.02
874 328 0.07
875 150 0.03
876 62 0.01
877 2 0.00
880 1 0.00
881 1 0.00
882 190 0.04
883 10 0.00
885 2 0.00
886 1 0.00
887 4 0.00
888 1 0.00
890 5 0.00
891 2 0.00
892 96 0.02
893 68 0.01
894 192 0.04
895 338 0.07
896 504 0.10
897 196 0.04
898 11 0.00
899 294 0.06
900 767 0.16
901 766 0.16
902 234 0.05
903 7 0.00
904 13 0.00
905 4 0.00
906 1 0.00
907 5 0.00
908 179 0.04
911 2 0.00
912 2 0.00
917 4 0.00
919 1 0.00
920 2 0.00
921 129 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGAGTACATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCACATGCTAGGC
TCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAATAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTACTTTCTAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGAGTCTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCGCCCGTCCGCCCGCTCGTTTTGTTGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGACCGGCAGCATGCA
GAAGGGCACCCAATCAATCCACGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
CTCATTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAA
Found at i:12908155 original size:26 final size:26
Alignment explanation
Indices: 12908119--12908170 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
12908109 TGACTTAGGC
12908119 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
12908145 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
12908171 TCGGACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:12909911 original size:26 final size:26
Alignment explanation
Indices: 12909875--12909925 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12909865 GTTGACTTAG
12909875 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12909901 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAATCTA
12909926 GGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12911392 original size:716 final size:717
Alignment explanation
Indices: 12910041--12911439 Score: 2148
Period size: 716 Copynumber: 2.0 Consensus size: 717
12910031 GGCATCGACA
* * * *
12910041 TTCCGATGATCGGGGGGGTCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGC
1 TTCCAATGATCGGGGCGGTCGGGGGGGTCTACGCACATGATGTGCGATGGGTACTGGTACTTGGC
*
12910106 CCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
66 CCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
12910171 GATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
131 GATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
*
12910236 TCACAAAAACTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCGTCCAAAAAAAATACAAG
196 TCACAAAAACTTGTACACTTGGAGTTTTTAGCTG-ATTTTTTTGTGCATCCAAAAAAAATACAAG
12910301 GATCACATCTACCAAGTTTGGGCCCAAAACACTTTCTGAAAAAATTTTAAAAAATCCTGAACCAC
260 GATCACATCTACCAAGTTTGGGCCCAAAACACTTTCTGAAAAAATTTTAAAAAATCCTGAACCAC
*
12910366 AGAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
325 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
** *
12910431 CTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGA
390 CTTAAGGGACCACTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGA
** *
12910496 TGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACG
455 TGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACA
* * * * * *
12910561 TAGTGCCCGCCCACCCGCCCTCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
520 TAATGCCCGCCCACCAGCCCTCCCGCTCATTTCGTCAGTTGGCTTAGGAAAACAGAGTTCATTCC
* * * * *
12910626 CAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
585 CAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTCCTGGTA
*
12910691 CCGTACTTTTCTTCGTCGGGGTACCATCATCGGAGCATCGTCGAAGAACCTGATCGATGGCATTG
650 CCGTACTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGAAGAACCTGATCGATGGCATTG
12910756 GAG
715 GAG
*
12910759 TTCCAATGATCGGGGCGGTCGGGGGGGTCTGCGCACATGATGTGC-ATTGGGTACTGGTACTTGG
1 TTCCAATGATCGGGGCGGTCGGGGGGGTCTACGCACATGATGTGCGA-TGGGTACTGGTACTTGG
* *
12910823 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTG
65 CCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *** *
12910888 AGATTTTACAGGTTTGCTGCCAGTAGTTGTTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATG
130 AGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
* * * * *
12910953 GTCACAAAATCTTGTACAGTTTGCGTTTTTAGCTG-TTTTCTTT-TGCATGCC-AACAAAATACA
195 GTCACAAAAACTTGTACACTTGGAGTTTTTAGCTGATTTT-TTTGTGCAT-CCAAAAAAAATACA
* * * * **
12911015 AGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTT-TGAAAATTTTTTAAAAAAT-CTCGAA
258 AGGATCACATCTACCAAGTTTGGGCCCAAAAC-ACTTTCTGAAAAAATTTTAAAAAATCCT-GAA
** *
12911078 CCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTG
321 CCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
12911143 AAGGCTTAAGGGACCACTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAA-AAATAT
386 AAGGCTTAAGGGACCACTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATG-AAGAAATAT
*
12911207 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGC
450 GAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGC
* * * *
12911272 CGGCATAATGCCTGCCCGCCAGCCCGT-CCGCTCATTTCGTCAGTTGGCTTAGGAAAACGGAGTT
515 CGACATAATGCCCGCCCACCAGCCC-TCCCGCTCATTTCGTCAGTTGGCTTAGGAAAACAGAGTT
* * *
12911336 CATTCCCAATCTAAGATCGTACCAGACCGAGGGTTGCGGGAGCACATGCTGGGCTCGGGCATGTC
579 CATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTC
* *
12911401 CTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGG
644 CTGGTACCGTACTTTTCTTCGTCGGGGCACCATCATCGG
12911440 GGGAGGTGTG
Statistics
Matches: 616, Mismatches: 58, Indels: 16
0.89 0.08 0.02
Matches are distributed among these distances:
715 2 0.00
716 392 0.64
717 13 0.02
718 209 0.34
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (717 bp):
TTCCAATGATCGGGGCGGTCGGGGGGGTCTACGCACATGATGTGCGATGGGTACTGGTACTTGGC
CCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
TCACAAAAACTTGTACACTTGGAGTTTTTAGCTGATTTTTTTGTGCATCCAAAAAAAATACAAGG
ATCACATCTACCAAGTTTGGGCCCAAAACACTTTCTGAAAAAATTTTAAAAAATCCTGAACCACA
AAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCACTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGAT
GTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACAT
AATGCCCGCCCACCAGCCCTCCCGCTCATTTCGTCAGTTGGCTTAGGAAAACAGAGTTCATTCCC
AATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTCCTGGTAC
CGTACTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGAAGAACCTGATCGATGGCATTGG
AG
Found at i:12913199 original size:86 final size:86
Alignment explanation
Indices: 12913098--12913266 Score: 248
Period size: 86 Copynumber: 2.0 Consensus size: 86
12913088 AAATCCTTCC
**
12913098 GAAAAAATTAAAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
1 GAAAAAATTAAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
12913163 CATCTTGCCATGAAACTTTCT
66 CATCTTGCCATGAAACTTTCT
** ** * **
12913184 GAAAAAATTTTAAAAAATCCTGAACCACAGAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
1 GAAAAAATTAAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
12913249 CGTCTTGCCATGAAACTT
66 CATCTTGCCATGAAACTT
12913267 CACGTGAAGG
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 73 1.00
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.23
Consensus pattern (86 bp):
GAAAAAATTAAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CATCTTGCCATGAAACTTTCT
Found at i:12914549 original size:26 final size:26
Alignment explanation
Indices: 12914513--12914565 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12914503 GTTGACTTAG
12914513 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12914539 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12914565 G
1 G
12914566 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12915193 original size:903 final size:897
Alignment explanation
Indices: 12913184--12915609 Score: 3533
Period size: 900 Copynumber: 2.7 Consensus size: 897
12913174 GAAACTTTCT
* **
12913184 GAAAAAATTTTAAAAAATCCTGAACCACAGAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
1 GAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
12913249 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
12913314 ATGGCATTGGCATGAAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
131 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
12913379 CTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCTCCTGCCCGCCCGCCCACTCGTTTCGTCG
196 CTTGTGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCCCGCTCACTC-TTTCGTCG
*
12913444 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGAAGC
259 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGC
* * *
12913509 AGGATTGGCAGCATGCAGAGGGGAACCAGACCGATCCTCGGCTTGCGAATCTCGCCCCTCTAGCC
324 AGGATTGGCAGCATGCAGAGGGGGACCAGACCGATCCTCGGCTTGCGAATCCCGCCCCTCTAGTC
* *
12913574 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCC-CTCTAA
389 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
12913638 GCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGACAGCACATGCTGGG
454 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTACGACAGCACATGCTGGG
* * ** *
12913703 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTGTC-AGAG
518 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGA-AG
* * *
12913767 AACCTAACCGGCGGCATTAGGGTTTCGGCGATTGGGGGGGCCGGGGGTGTACACACATGATGTGC
582 AACCTGACCGGCGGCATTAGGG-TTCAGCGATCGGGGGGGCCGGGGGTGTACACACATGATGTGC
* * *
12913832 GATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACA
646 GATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12913897 CCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
711 CCCCCTTAAAGAGCATTTGAGACTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
* * * *
12913962 GGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTG
776 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTGTG
** *
12914027 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCATCC
841 CATGCCAAAAAAAATACAAGGATCACCTCTAACAAGTTTGGGGCCAAAAATCCATCC
* *** * *
12914084 GAAAAAATTTTTAAAAATCCTGAACGGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGT
1 GAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
12914149 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTAGGAATTTACAAGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
12914214 ATGGCATCGGCACACAGAAATGTGAAGATGTGCCCAAACACACCTACCACCCTATCGATCCACGG
131 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
12914279 CTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCACTCATTTCGTCG
196 CTTGTGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCCCGCTCACTC-TTTCGTCG
* * * *
12914344 GTTGGCTTAGGCATATGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGTAGCAGC
259 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGC
* * * *
12914409 AGGATTGGTAGCACGCAGAGGGGGACCTGACCAATCCTCGGCTTGCGAATCCCGCCCCTCTAGTC
324 AGGATTGGCAGCATGCAGAGGGGGACCAGACCGATCCTCGGCTTGCGAATCCCGCCCCTCTAGTC
*
12914474 GGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
389 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
12914539 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGATACGACAGCACATGTTGGG
454 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTACGACAGCACATGCTGGG
* * * * *
12914604 CTCGGGCAAGTGCTGTTGCTGCATTTTTCTTCATCGGGGCACGATCGTCAGAGCATCGTCGAAGA
518 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGAAGA
* * * *
12914669 ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGT
583 ACCTGACCGGCGGCATTAGGGTT-CAGCGATCGGGGGGGCC-GGGGGTGTACACACATGATGTGC
*
12914734 GATGGGTGCTGGTACTTGGCCCTTATATTGGATCCCTATCCCTCATCAAACCTCGAGAACTCACA
646 GATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12914799 CCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
711 CCCCCTTAAAGAGCATTTGAGACTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
*
12914864 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGT
776 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTTTTTGT
** * *
12914929 GCATGCCAGCAAAAATACAAGGATCACCTCTAACAAGTTTGGGGCCAAAACTCCTTCC
840 GCATGCCAAAAAAAATACAAGGATCACCTCTAACAAGTTTGGGGCCAAAAATCCATCC
**
12914987 GAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
1 GAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
12915052 CGTGTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** *
12915117 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATAAATCCATGG
131 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
12915182 CTTGTGCATCCCGTCTCTCTGGCTGGCGTAGT----GCCCGCCCGCCCGCTC-GT-TTT-GTCGG
196 CTTGTGCATCCCGTCTCTCTGGC-GGCGTAGTGCCCGCCCGCCCGCCCGCTCACTCTTTCGTCGG
* * * * *
12915240 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTATGGCAGCA
260 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCA
* ** * * *
12915305 GGATTGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCAT-TGGTC
325 GGATTGGCAGCATGCAGAGGGGGACCAGACCGATCCTCGGCTTGCGAATCCCGCCCC-TCTAGTC
* * * * *
12915369 GGGTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
389 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
12915434 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCAAGGGTTACGGCAGCACATACTGGG
454 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACCGAGGGTTACGACAGCACATGCTGGG
* * * * * *
12915499 CTCGAGCCTGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGACCATC-ACTGGAG
518 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTC-GAAG
* * * *
12915563 AACCTGACCGACGACATTTGGGTTCTGACGATCGGGGGGGCCGGGGG
582 AACCTGACCGGCGGCATTAGGGTTCAG-CGATCGGGGGGGCCGGGGG
12915610 ACTGAACGTC
Statistics
Matches: 1363, Mismatches: 152, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
894 8 0.01
895 316 0.23
896 4 0.00
898 1 0.00
899 16 0.01
900 411 0.30
901 149 0.11
902 195 0.14
903 263 0.19
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (897 bp):
GAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGTGCATCCCGTCTCTCTGGCGGCGTAGTGCCCGCCCGCCCGCCCGCTCACTCTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAG
GATTGGCAGCATGCAGAGGGGGACCAGACCGATCCTCGGCTTGCGAATCCCGCCCCTCTAGTCGG
TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTACGACAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGAAGAACC
TGACCGGCGGCATTAGGGTTCAGCGATCGGGGGGGCCGGGGGTGTACACACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGACTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
ACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACCTCTAACAAGTTTGGGGCCAAAAATCCATCC
Found at i:12915438 original size:26 final size:26
Alignment explanation
Indices: 12915408--12915460 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12915398 GTTGACTTAG
*
12915408 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12915434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12915460 G
1 G
12915461 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12916653 original size:120 final size:118
Alignment explanation
Indices: 12916437--12916659 Score: 313
Period size: 120 Copynumber: 1.9 Consensus size: 118
12916427 GACAACACGC
* *
12916437 AGAGAGGGACCCGATCGATTCCCAGCCTGCGCATCCTGCCCCCTGGCCAGTTGAGCACCACACGC
1 AGAGAGGGACCCGATCGATCCCCAGCCTGCGCATCCTGCCCCCTGGCCAGCTGAGCACCACACGC
* *
12916502 TCGTTTTGTAGGTTGACTTAGGCATATGGAGTTCATTCTCGGTCTAAGCAAGT
66 TCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCTCGGTCTAAGCAAGT
* * * * **
12916555 AGAGGGGGACCCGATCGATCCCC-GACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGTCCGTA
1 AGAGAGGGACCCGATCGATCCCCAG-CCTGCGCATCCTGCCCC-CTGGCCAGCTGAGC-ACCACA
*
12916619 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
63 CGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTC
12916660 CCAGTCTTAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
117 1 0.01
118 37 0.41
119 12 0.13
120 41 0.45
ACGTcount: A:0.17, C:0.30, G:0.28, T:0.24
Consensus pattern (118 bp):
AGAGAGGGACCCGATCGATCCCCAGCCTGCGCATCCTGCCCCCTGGCCAGCTGAGCACCACACGC
TCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCTCGGTCTAAGCAAGT
Found at i:12919139 original size:26 final size:26
Alignment explanation
Indices: 12919103--12919155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12919093 GCCGACTTAG
12919103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12919129 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12919155 G
1 G
12919156 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12919944 original size:871 final size:875
Alignment explanation
Indices: 12918258--12921667 Score: 4526
Period size: 899 Copynumber: 3.8 Consensus size: 875
12918248 GTTGGCTTAG
* * * * *
12918258 GCATACGGAGTTCATTCCCATTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGG
* * *
12918323 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATC-CTCGAAGCATCGCTGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGAAGCATCGCCGGAG
** * * * * *
12918387 AACCAAACCTACGGCATTTGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCACACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12918452 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCTC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
12918517 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAACCATTAAAGCGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12918582 GGGAACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGGTCAAATTTTTTA
326 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAATTTTTTA
*
12918647 TGCATGCCAACAATAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
*
12918712 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
456 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12918777 GCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12918842 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACAGCTTGCG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * *
12918907 CATCCCGTCTCTCTGGCCGACGTACTGCTCGCCCGCCAGCCCGCCTGGTCGTTTCGTTGGTTGGC
651 CATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCC-CCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** ** * ** * *
12918972 TTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGATTGGATGGAGGGTTACGGTAGCAAGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGATTGAGGGTTGTGGCAGCAGGATC
* * * * * *
12919037 GACAGCACGTAGAGGGGAACCCGGTAGATGCCCGGCTTACGTATCCCG-CCC-CT-CT-G-G-C-
776 GACAGCACGTAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCGCTCCTAGCGTCT
12919095 C-GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CGGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12919129 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATTGGACCGAGGGCTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
12919194 CTCGAGCATGTGCTGGTGCTGCCTTTTTCTTCACCGGTGCACCATCGCT-GGAGCATCGCCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGAAGCATCGCCGGAG
* * *
12919258 GACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
12919323 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTCA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCA
*
12919387 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
12919452 TGGCGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAATTTTTT
* *** * * *
12919517 GTGCATGCCAACAAGGGTACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAA
* * ** * *
12919582 AATTTTAAAAAATTCCAAATCACAAAAACTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
12919647 TGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTTCAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12919712 ATTGGCACATAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* *
12919777 GCATCCCGTCTCTTTGGTCGACGTAGTGCCCGCCCCCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCCCCCG--C-CC-GCTCGTTTCGTCGGTTGG
* *
12919842 CTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGAACGGATTGAGGGTTGTGACAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGATTGAGGGTTGTGGCAGCAGGAT
* *
12919907 C-AGCAGCACGTAGAGGGGGATCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
775 CGA-CAGCACGTAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCG---C-C---CC-GC-
* *
12919971 GAGTGCCCGTAAGCTTGTTTCACGGGTTCACTTAGGCATACTGAGTTCATTCCCAGTCTAA
830 ---T--CC-T-AGC--G--TCTC-GG---ACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
12920032 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTACGACAGCGCATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGG
* * ** * *
12920097 CTCGGGCTTGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCAT-TTTCGAAGCATCGTCAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCAC-CGGGGCACCATCGCTCGAAGCATCGCCGGA
** * * *
12920160 GAACCTGATTGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCTCATGATGT
130 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
12920225 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
12920290 CAACACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12920355 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTCAAATTTTTT
325 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAATTTTTT
*
12920420 ATGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAA
*
12920485 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12920550 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
12920615 ATTGGCATGCAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATACACAGCTTGC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
*
12920680 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTA
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
12920745 GGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCGAC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGATTGAGGGTTGTGGCAGCAGGATCGAC
* * * *
12920810 AGCACGCAGAGTGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
779 AGCACGTAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCGCT---C--CT-A--G
*
12920875 CCCGCACACTATTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 --CG----------TC-T-CG--GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12920931 TCATAGGGTGCTCATTCTCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGG
* ** * *
12920996 CTC-AGGCATGTGCTGGTGCCGCAGTTTTCTTTGCCGGGGCACCATCG-TCGGAGCATCGCCGAA
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGAAGCATCGCCGGA
* * *
12921059 GAACCTGACC-AGCGGCATTGGGGTT-CTAGCGATCGGGGGTGCCGGGGGGTGTGTGCACATGAT
130 GAACCTGACCGA-CGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
*
12921122 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* *
12921187 CACACCCCCTTAAAGAGCATTTGAGATCTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** *
12921252 AATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCT-AAATTTT
323 AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAA-TTT
* * *
12921316 TTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
387 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGA
* ** * * *
12921381 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGGGTCG
452 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
*
12921446 TCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
12921511 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCT
582 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
* * *
12921576 TGCGCATTCCGTCTCTCTGGCC-AGCGTAGTGCCCG---TCCGCCCGCTCGTTTCGTTGGTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGC
12921637 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
12921668 CATATGGAGT
Statistics
Matches: 2242, Mismatches: 226, Indels: 118
0.87 0.09 0.05
Matches are distributed among these distances:
867 9 0.00
868 3 0.00
869 2 0.00
870 2 0.00
871 717 0.32
872 3 0.00
876 1 0.00
879 2 0.00
881 1 0.00
885 1 0.00
887 1 0.00
888 4 0.00
889 3 0.00
890 1 0.00
891 4 0.00
892 2 0.00
893 1 0.00
894 1 0.00
895 55 0.02
896 1 0.00
897 1 0.00
898 6 0.00
899 766 0.34
900 6 0.00
901 1 0.00
902 7 0.00
903 641 0.29
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGAAGCATCGCCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAATTTTTTA
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGATTGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCGCTCCTAGCGTCTCGGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAA
Done.