Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 67 of 131
Found at i:12920035 original size:26 final size:26
Alignment explanation
Indices: 12920006--12920058 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12919996 GTTCACTTAG
*
12920006 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12920032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12920058 G
1 G
12920059 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12921677 original size:26 final size:26
Alignment explanation
Indices: 12921641--12921693 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12921631 GTTGGCTTAG
12921641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12921667 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12921693 G
1 G
12921694 AACGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12922313 original size:737 final size:737
Alignment explanation
Indices: 12920887--12922407 Score: 2379
Period size: 737 Copynumber: 2.1 Consensus size: 737
12920877 CGCACACTAT
* * * *
12920887 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATCATAGGGTGCTCATTCTCAG
1 TTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGGAGCTCATTCCCAG
* *
12920952 TCTAAGATCGAACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG
66 TCTAAGAACGAACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTGCCG
** * *
12921017 CAGTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCAGCGGCATTGGGG
131 CAGTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGAAGAACCTGACCAGCGGCATTGGGG
* * *
12921082 TTCTAGCGATCGGGGGTGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
196 TTCGAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
12921147 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
261 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTCGAG
12921212 ATCTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGT
326 ATCTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGT
*
12921277 CACAAAATCTTGCACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATAAAAG
391 CACAAAATCTTGCACACTTAGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATAAAAG
* * *
12921342 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
456 GATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTCAAAAAATCCCGAACCGC
**
12921407 AAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGGGTCGTCTTGCCATGAAACTTCACGCGAAGG
521 AAAAAGTTTCAAAAATCCTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGCGAAGG
**
12921472 CTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
586 CTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * * *
12921537 TGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATTCC-GTCTCTCTGGCCAGC
651 TGTGCCTAAACCCACCTACCAACCTACCGATCCACGGCTTGCGCA-TCCTGTCTCACTGGCCAGC
*
12921601 GTAGT-GCCCGTCCGCCCGCTCG
715 GTAGTCGCCCGCCCGCCCGCTCG
* * * * *
12921623 TTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGGAGCTCATTCCCAG
* * *
12921688 TCTAAGAACGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCG
66 TCTAAGAACGAACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTGCCG
* * * * *
12921753 CATTTTTCTTCATCTGGGCACCATCATCGGAGCATCACCGGAGAACCTGATC-GACGGCATTGGG
131 CAGTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGAAGAACCTGACCAG-CGGCATTGGG
12921817 GTTCCGA-CGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
195 GTT-CGAGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
12921881 GGCCCTTATATTGG-CCCCTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
257 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* * *
12921945 CGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
322 CGAGATCTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAA
* * *
12922010 TGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATA
387 TGGTCACAAAATCTTGCACACTTAGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATA
* *
12922075 CAATGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTCAAAAAATCCCGAA
452 AAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTCAAAAAATCCCGAA
* * * *
12922140 CCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGCG
517 CCGCAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGCG
*
12922205 AAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACATAAATATG
582 AAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* *
12922270 AAGATGTGCCTAAACTCACCTACCAACCTACCGATCCACGGCTTGCGCATCCTGTCTCACTTGCC
647 AAGATGTGCCTAAACCCACCTACCAACCTACCGATCCACGGCTTGCGCATCCTGTCTCACTGGCC
*
12922335 GGCGTAGTGCCCGCCCGCCCGCCCGCTCG
712 AGCGTAGT---CGCCCGCCCGCCCGCTCG
* **
12922364 TTTCATCGGTTGTCTTAGTTATACGGAGTTCATT-CCAGTCTAAG
1 TTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12922408 ATTGGACCGA
Statistics
Matches: 714, Mismatches: 62, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
735 1 0.00
736 189 0.26
737 415 0.58
738 54 0.08
740 10 0.01
741 45 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (737 bp):
TTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGGAGCTCATTCCCAG
TCTAAGAACGAACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTGCCG
CAGTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGAAGAACCTGACCAGCGGCATTGGGG
TTCGAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTCGAG
ATCTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGT
CACAAAATCTTGCACACTTAGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATAAAAG
GATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTCAAAAAATCCCGAACCGC
AAAAAGTTTCAAAAATCCTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGCGAAGG
CTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
TGTGCCTAAACCCACCTACCAACCTACCGATCCACGGCTTGCGCATCCTGTCTCACTGGCCAGCG
TAGTCGCCCGCCCGCCCGCTCG
Found at i:12922580 original size:26 final size:26
Alignment explanation
Indices: 12922543--12922592 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12922533 GACTTAGGCA
12922543 TACGGAGATCATTCCCACTCTAAGCG
1 TACGGAGATCATTCCCACTCTAAGCG
* *
12922569 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGATCATTCCCACTCTAAG
12922593 ATTTGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGATCATTCCCACTCTAAGCG
Found at i:12923465 original size:26 final size:26
Alignment explanation
Indices: 12923435--12923487 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12923425 GTTGACTTAG
*
12923435 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12923461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12923487 G
1 G
12923488 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12923945 original size:897 final size:893
Alignment explanation
Indices: 12921612--12927986 Score: 7512
Period size: 926 Copynumber: 7.1 Consensus size: 893
12921602 TAGTGCCCGT
* * * *
12921612 CCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
12921677 TTCATTCCCAGTCTAAGAACGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATG
* * * * * * *
12921742 TGCTAGTGCCGCATTTTTCTTCATCTGGGCACCATCATCGGAGCATCACCGGAGAACCTGATCGA
131 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGA
12921807 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
196 CGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
12921872 CTGGTACTTGGCCCTTATATTGG-CCCCTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTA
259 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
12921936 AAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
324 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
12922001 TTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
389 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
12922066 AGAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTCAAAA
454 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAA
* * * * *
12922131 AATCCCGAACCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATGAAA
519 AATCCC-AAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * **
12922196 CTTCACGCGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
583 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * * *
12922261 ATAAATATGAAGATGTGCCTAAACTCACCTACCAACCTACCGATCCACGGCTTGCGCATCCTGTC
648 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * **
12922326 TCACTTGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGTCTTAGTTATACGGA
713 TCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * *
12922391 GTTCATT-CCAGTCTAAGATTGGACC-GAACTGAGGGTTGTGGCAGCAGGATAGCCGGCACACAG
774 GTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGT-GTAGCAGGATCGGCAGCACGCAG
* * * * *
12922454 AGGGTGACCCGGTCGATCCCCGGCTTGCGCATCCCGGCCCTCTGGCTGGCTGAGCGC
837 AGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
12922511 CCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCACTCTAAGCGTACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
** * * ** * *
12922576 TTCATTCCCAGTCTAAGATTTGACTGGACTGAGGGTTGTGGTAGCATATGCTGGGCTC-AGGCAT
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCAT
* ** * *
12922640 GTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTC-AGAGCATCGTCGAAGAACCTGACC
130 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATCGCCGGAGAACCTGACC
** * ** *
12922704 GGTGGCATCGGCATTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
194 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
12922769 CCGATACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCAAGAACTCACACCCCCTTA
259 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
12922834 AAGAGCATTTGAGATTTTACAGGTTTGATGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
324 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
12922899 TTTTTCAAATGGTCACAAAATCTAGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATACCA
389 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
12922964 ACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACGT-TTTCTGAAAAAATTTTAAA
454 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-GTCCTTCTGAAAAAATTTTAAA
** * * *
12923028 AAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
518 AAATC-CCAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
12923093 ACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
582 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
12923158 CAAAAATATGAAGAGGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGAATCCCGT
647 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * * * * *
12923223 CTCTCTGGCCGGTATAGTGCACGCCCGTCCACTCCTTTCGTCGGTTGGCTTAGGGATACGGAGTT
712 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * *
12923288 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGTCAGCAGGATCGGTAGGACGCAGAGGG
777 CATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGT-AGCAGGATCGGCAGCACGCAGAGGG
* * *
12923353 GGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCAT-TGGCGGGGTGAGCGC
841 GGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCC-TCTGGCCGGCTGAGCGC
* * * *
12923406 CTGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
12923471 TTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGGCAGCACATGCTGGGCTCGAGCTTG
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATG
* *
12923536 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAACCATCGCCGGAGAACCTGACCGA
131 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGA
** *
12923601 CGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGTGCGCACATGATGTGCTATGGGT
196 CGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGG-GTGTGCGCACATGATGTGCGATGGGT
12923666 GCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
258 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12923730 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGAGTCTGAAATGGGGACAC
323 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
12923795 GTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
388 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
** * * *
12923860 AAAAAAAATACAAGGATCACGTCTAAGAAGCTTGGGGCCAAAAGTCCATCTGAAAAAATTTAAAA
453 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAA
* * *
12923925 AAATCCCAAACGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATTTTCCCATGAA
518 AAATCCCAAACG-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
12923990 ACTTCACGAGAAGCCTTGAA-GGATCATTGTATGAGTTTACAAGTCC-TAAAAATGGGATTGGCA
582 ACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAG-CCATAAAAATGGCATTGGCA
* * *
12924053 --CATAGAAATATGAAGATATGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTACGCATC
645 TGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
12924116 CCGTCTCTCTGGCCGTCTTAGTGCCCGCCCGCCCGCCCGTCCGTTTCGTCAGTTGGCTTAGGCAT
708 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-T-CGTTTCGTCGGTTGGCTTAGGCAT
* * ** * * * * *
12924181 ACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCAAGATCGACAGCAT
769 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG-TGTAGCAGGATCGGCAGCAC
* * * * *
12924246 GCAGAGGGGGACCCGGTCGATCCCTA-CTAGCGCATCCCGCCCCTCTGGCCAGCTAAGCGC
833 GCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
12924306 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
12924371 TTCATTCCAAGTCTAAGATCAGACCGGACCGA-GGTTACGGCAGGACGTACTGGGCTCGGGCATG
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATG
* * * * *
12924435 TGCTGGTGCCACATTTCTCTTCGTCGGGGCACCATCG-CTGAAGCATCACCGAAAAACCTGACCG
131 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAAGCATCGCCGGAGAACCTGACCG
* *
12924499 GCGGCATTGGGG----G--G--C-------CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
195 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
12924549 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
260 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
12924614 GGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
325 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
12924679 TTTTCAAATGATCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
390 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * **
12924744 AAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAA
455 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAA
*
12924809 ATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
520 ATCCCAAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
12924874 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGCA
584 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
12924939 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTGCGCATCCCGTCT
649 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
12925004 TTCTAGCCGGCGTAGTGCTCGCCCGCTTGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGC
714 CTCTGGCCGGCGTA--G-T-G-CC-C--GCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
12925069 ATACGAAGTTCATTCCCAGTCTAAGATCAGTCCAGA-TCGAGGGTTGTGGCAGCAGCATCGGCAG
767 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGT-GTAGCAGGATCGGCAG
* * * * * * *
12925133 CACGCAGATGTGGACCCGACCGATCCCCGGCTTGCGCCTCCCGCCCC-CTAGCCGGCTGAGCAC
830 CACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * ** * ** * **
12925196 CCGCAAGTTCGCTTCAAGGTTTGACTTACACATACGGAGTTCATTCCCAATCTAAGCATACAAAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* ** * * * * * * *
12925261 TTCATTCCCAGTCTAGGATTGGACTGGACCGGGGGTTGCAGCAGCAAATACTGGGCTCGGGCATG
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATG
* * *
12925326 TGCTGGT-CCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTTACCGA
131 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGA
* * *
12925390 CGGCATTGGGGTTCCGACGATC-GGGGGGCTGGGGGGTGTGCGCACATGATATGCGGTGGGTGCT
196 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
12925454 GGCT-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
261 GG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
12925518 AGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTT
325 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
12925583 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
390 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
12925648 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCATCTGAAAAAATTTTAAAAA
455 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAA
* *
12925713 ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATTTTGCCATGAAAC
520 ATCCCAAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * * *
12925778 TTCACGAGAAGGCTTCAGGGATCATTGTATGAGTTTACAAGTCC-TAAAAATAGCATTGGAATGC
584 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CCATAAAAATGGCATTGGCATGC
* * *
12925842 AGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
648 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
12925907 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTC
713 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
12925972 ATTCCCAGTCTAAGATTGGATCAGACTAAGGGTTATGGTAGCAGGATTGACAGCACGTAGAGGGG
778 ATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGT-GTAGCAGGATCGGCAGCACGCAGAGGGG
* * * * *
12926037 GACCCGATCAATCCCC-GACTTACGCATCCCGCCCGTCTGGCCAGCTGACCGC
842 GACCCGATCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** **
12926089 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATATAGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * **
12926154 TTCACTCCCAATCTAAGATCGGACTAGACCGAGGGTTACGACAGCATATGCTAGGCTCGGGCATA
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACG---GC--A-GC-A--------C--A
12926219 TGCTGGTGC-CGCATATGCTAGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
114 TGCTGG-GCTCG---A-GC-A---T---G----TGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * ** ** * *
12926283 CATCGCCGGAGCATCTTCGGAGAACCTGACCGGTGGTATTGAGGTTCCGACGATCGGGGGGGCC-
163 CATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
*
12926347 GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
228 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
12926412 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAG
293 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
12926477 TAGCCATTTAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
358 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
** *
12926542 AGTTTTTAGCTGAATTTTTTTGTAAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
423 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
12926607 GCCCAAAACTCCTT-AGAAGAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCTTA
488 GGCCAAAAGTCCTTCTGAA-AAAATTTTAAAAAATCCC-AAACGCAAAAAGTTTCAAAAATCATG
* *
12926671 AAAAATAGAAAACGAGTTGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGA
551 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
**
12926736 ATTTACAAGCCATAAAAATTACATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
616 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
12926801 ACCCTATCGATCCATGGCTTGCGCATCACGTCTCTCTGGCCGACGTAGTGCCCACCCACCCACTC
681 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-----CC-CGC-C-C
* * * ** * * * * *
12926866 GCCCGTTCGTGTCATCGGTTCACTTAGGCATACGAAGTTCA-TCCTCAGTATAAGATCAGATCGG
738 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATCGGACCAG
* * * * * * *
12926930 ACTGTGGGTTGGGTAGCAGGATCAGCAACATGCAGAGGGGGACCC-AGTCGAT-ACCAGTCATGC
802 ACTGAGGGTTGTGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCAG-CTTGC
* * * * *
12926993 GCATCCCACCCCTCCGGTCGGCTAAGCAC
865 GCATCCCGCCCCTCTGGCCGGCTGAGCGC
** * *
12927022 CCATACGCTCGTTTC--AGG--G--TT-----T---GA---C--T--CAG-----GCATAGGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *** *
12927061 TTCATTCCCTGTGC-AAGATCAGACCGGACCAAGGGTTGCATAAGCACATGCTGGACTC-AGGCA
66 TTCATTCCCAGT-CTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCA
* * * * *
12927124 TGTACTGGTGCCGTATTTTTCTTCGTTGGGGCACCATC-ACTGAAGCATCGTCGGAGAACCTGAC
129 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAAGCATCGCCGGAGAACCTGAC
* * * *
12927188 C-AGCGGCATTGGGGTTTCGGCAATCAGGGGGGCCGAAGGGGGGTGTGCGCACATGATGTGCGAT
193 CGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGAT
* * *
12927252 GGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCC
254 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
12927317 CCTTAAAGAGCATTTGAGATTTTGCAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
319 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
12927382 ACACTTTTTTCAAATAGTCAAAAAATCTTGTAAACTTCGAGTTATTAGCTGAATTTTTTTGTGCA
384 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * * **
12927447 TGCCAACAAAAATACAGGGATCACGTCCACTAAGTTTGGGGCCAAAACTCGTTCCAAAAAAATTT
449 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTT
* * * *
12927512 TAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCT
514 TAAAAAATC-CCAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
** * * *
12927577 TGAAACTTCGTGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAACCATAAAAATGGCATTAG
578 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
12927642 CACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACTGCTTGCGCATC
643 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
12927707 CCGTCTCTCTGGCTGGCATAGTGCCCGCCCGTACGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
708 CCGTCTCTCTGGCCGGCGTAGT----G-CC---CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
12927772 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGA-TCGAGGGTTACG-GTAGCAAGATAGA
765 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTT--GTGTAGCAGGATCGG
* * * * *
12927835 CAACACGTAGAGGGGGACCCGGTCGAT--CC--C-T----A-------ACT-T--AC-GC--A--
827 CAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
12927876 GC
892 GC
12927878 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
12927943 TTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGCAG
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAG
12927987 TAGGATCGAT
Statistics
Matches: 4711, Mismatches: 598, Indels: 351
0.83 0.11 0.06
Matches are distributed among these distances:
856 14 0.00
858 3 0.00
860 3 0.00
861 1 0.00
862 2 0.00
864 2 0.00
867 1 0.00
870 2 0.00
871 1 0.00
873 1 0.00
874 1 0.00
875 81 0.02
876 1 0.00
877 3 0.00
878 1 0.00
879 515 0.11
880 39 0.01
881 46 0.01
882 458 0.10
883 3 0.00
884 4 0.00
885 2 0.00
886 4 0.00
887 2 0.00
888 1 0.00
889 1 0.00
890 256 0.05
891 53 0.01
892 115 0.02
893 98 0.02
894 49 0.01
895 283 0.06
896 19 0.00
897 467 0.10
898 449 0.10
899 289 0.06
900 121 0.03
901 98 0.02
902 3 0.00
904 464 0.10
905 3 0.00
907 37 0.01
908 1 0.00
910 8 0.00
911 2 0.00
912 3 0.00
914 3 0.00
915 1 0.00
916 1 0.00
918 1 0.00
919 2 0.00
921 1 0.00
922 1 0.00
925 13 0.00
926 527 0.11
927 11 0.00
929 1 0.00
931 4 0.00
932 5 0.00
933 73 0.02
934 57 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAA
TCCCAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGTAGCAGGATCGGCAGCACGCAGAGGGGGACC
CGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
Found at i:12924371 original size:26 final size:26
Alignment explanation
Indices: 12924335--12924387 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12924325 GTTGACTTAG
*
12924335 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12924361 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12924387 G
1 G
12924388 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12926154 original size:26 final size:26
Alignment explanation
Indices: 12926118--12926170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12926108 GTTGACTTAG
* *
12926118 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCACTCCCAATCTAA
12926144 GCATATAGAGTTCACTCCCAATCTAA
1 GCATATAGAGTTCACTCCCAATCTAA
12926170 G
1 G
12926171 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCACTCCCAATCTAA
Found at i:12926219 original size:17 final size:17
Alignment explanation
Indices: 12926197--12926254 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
12926187 GGTTACGACA
12926197 GCATATGCTAGGCTCGG
1 GCATATGCTAGGCTCGG
*
12926214 GCATATGCT-GG-T-GCC
1 GCATATGCTAGGCTCG-G
12926229 GCATATGCTAGGCTCGG
1 GCATATGCTAGGCTCGG
12926246 GCATATGCT
1 GCATATGCT
12926255 GGTGCCGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 1 0.03
15 10 0.29
16 4 0.11
17 19 0.54
18 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26
Consensus pattern (17 bp):
GCATATGCTAGGCTCGG
Found at i:12926234 original size:15 final size:15
Alignment explanation
Indices: 12926214--12926264 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
12926204 CTAGGCTCGG
12926214 GCATATGCTGGTGCC
1 GCATATGCTGGTGCC
*
12926229 GCATATGCTAGGCT-CGG
1 GCATATGCT-GG-TGC-C
12926246 GCATATGCTGGTGCC
1 GCATATGCTGGTGCC
12926261 GCAT
1 GCAT
12926265 TTTTCTTCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
15 14 0.47
16 6 0.20
17 10 0.33
ACGTcount: A:0.16, C:0.25, G:0.33, T:0.25
Consensus pattern (15 bp):
GCATATGCTGGTGCC
Found at i:12926238 original size:32 final size:32
Alignment explanation
Indices: 12926197--12926264 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
12926187 GGTTACGACA
12926197 GCATATGCTAGGCTCGGGCATATGCTGGTGCC
1 GCATATGCTAGGCTCGGGCATATGCTGGTGCC
12926229 GCATATGCTAGGCTCGGGCATATGCTGGTGCC
1 GCATATGCTAGGCTCGGGCATATGCTGGTGCC
12926261 GCAT
1 GCAT
12926265 TTTTCTTCGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.16, C:0.25, G:0.34, T:0.25
Consensus pattern (32 bp):
GCATATGCTAGGCTCGGGCATATGCTGGTGCC
Found at i:12927943 original size:26 final size:26
Alignment explanation
Indices: 12927907--12927959 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12927897 GTTGACTTAG
12927907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12927933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12927959 G
1 G
12927960 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12929000 original size:26 final size:26
Alignment explanation
Indices: 12928963--12929015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12928953 GTTAACCTAG
*
12928963 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
12928989 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
12929015 G
1 G
12929016 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:12931406 original size:26 final size:26
Alignment explanation
Indices: 12931370--12931422 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12931360 GTTGACTTAG
* *
12931370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
12931396 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
12931422 G
1 G
12931423 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:12933082 original size:26 final size:26
Alignment explanation
Indices: 12933046--12933098 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12933036 GTTGACTTAG
12933046 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12933072 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12933098 G
1 G
12933099 ATCAGACAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12936184 original size:896 final size:894
Alignment explanation
Indices: 12932351--12937710 Score: 7075
Period size: 896 Copynumber: 6.0 Consensus size: 894
12932341 CCGATGATCG
**
12932351 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCTCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCC
*
12932416 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAG
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
12932481 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
130 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
12932546 AGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
195 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * * ** * *
12932611 GGCCAGAACTCCTTTTGAAAAAATTTTAAAAAATTCCAAACCACAAAAACTTTC-AAAATCATGA
260 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGA
* * * *
12932675 AAAAGAAAAAATGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
12932740 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
390 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
12932805 CCCTATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCAGCGTAGTGCC--CACCACCTGCTC
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGC-CCGCCCGCTC
* * * * *
12932868 ATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGCACCGGACCGAGGGT
519 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
* * * * * *
12932933 TGTGGCACCAGGATTGGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGTC
584 TGTGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * *
12932998 CCTCTGGCCGGCCGAGCGCCCGCACGTTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTC
649 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
12933063 CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGA-CAGAACCGAGGGTTGCGGCAG
714 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAG-ACCGAGGGTTGCGGCAG
** * * * *
12933126 CACATGCAAGGCTC-GAGCATCTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
777 CACATGCTGGGCTCTG-GCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAG
* * *
12933190 CATCGTCGGAGAGCCTGACCGACGGCATTGGGGTTTCGACGAT-----TG--G-
841 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGA
* *
12933236 GGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
* * *
12933301 TCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGAATTTGAGATTTTAGAGGTTTGCTGCCAG
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
12933366 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACATAATCTTGTACACTTCG
130 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
12933431 AGTTTTTAGCTGAATTTTTTTTGAGCATGCCAAC-AAAATACAAGGATCATGTCTCCCAAGTTTG
195 AGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
* * * *
12933495 GGGCCAAAAAT-CTTTTCAAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
259 GGGCCAAAACTCCTTCT-GAAAAAATTTT-AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
** **
12933559 TGAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATGATTCCAT
322 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* **
12933623 GAATTTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTA
387 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
12933688 CCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCACCCGC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTG----CCCGC
* * * * * *
12933753 CTGCTCATTTCATCGGTTGGCTTAGGCATA-GGAAGTTTATTCCCAGTGTAAGATCAGACCGGAC
513 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCGGATCGGAC
* ** * * * *
12933817 TGAGGGTTGTGGCAGCAGGATCAACAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
577 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * * * *
12933882 TCTCGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAC
642 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* * * * *
12933947 TTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGAACTAAATCGAGGGTTGC
707 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC
* * * *
12934012 GCCAGCACAGGCTGGGCTC-CGCTATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGGCACCATCG
772 GGCAGCACATGCTGGGCTCTGGC-ATGTGCTGGTGCCACATTTTTCTTCGTCA-GGGCACCATCG
* * * * * * * *
12934075 -TGGAGGTATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGAAGAT-AGGGGGCCGG
835 CCGGA-GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGA
*
12934134 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
* * * * *
12934199 TTATCAAACCTTGAGAA-ACACACCCCCTTAAAGAGCATTTGAGAATTTATAGGTTTGCTGCCAG
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
12934263 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCG
130 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
12934328 AGTTTTTGGCTAAATTTCTTTGTGCGTGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGG
195 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * *
12934392 GGCTAAAACTCCTTCTGAAAAAAATTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGA
260 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGA
*
12934457 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
12934522 TTTACAAGCCATAAAAATGGCATTGGCAAATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
390 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
12934587 CCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCTCGT
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------G-C-CT-GC
* * * * *
12934652 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC-GAGTTCGTTCCCAGTCTAAGATC-AAACT
509 CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-
* * * * * * *
12934715 TGACCGAGGGTTGTGGCAACAGGATCGGCAGCACGTAGAGGGGGACTCGGCTGATCCCCGGCTTG
573 GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTG
* ** * * * * *
12934780 TGCATCCCGCCCCTCTACCCCGCTGAGTGCCCACACGCTTATTTTGTGGGTTGACTTAGGCATAC
638 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * * * * **
12934845 GAAGTTCATTCCCTGTCTAAGCATACGGAGTTCACT-CCAGTCTAAGATCGGATCAGAATGAGGG
703 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGG
* * * *
12934909 TTGCGGCGGCACATGCTGGGCT-TGAGCATGTGCTGGTGCCATATTTTTCTTCATCAAGGCACCA
768 TTGCGGCAGCACATGCTGGGCTCTG-GCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCA
* * * * * **
12934973 TCGCCAGAGCATCGTCGTAGAACCTGACTGGCAGCATTAGGGTTTCGGTGATCGAGGGGGCC-A
832 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCG-GGGGGCCGA
* ** *
12935036 GGGGGGTGTACGCACATGATGTATGATGGATGCTGGTACTTGGCCCTTATATTGGGCCCCTATCC
1 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCC
*
12935101 CTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
64 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
12935166 GTAGCCATTAGAGTGTCTGAAATGGGGACTCTTTTTTCAAGTGGTCACAAAATATTGTACACTTC
129 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
12935231 AAGTTTTTAGCTG-ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
194 GAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
* * * * * **
12935295 GGGGACAAAACTACTTCTGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGT
258 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGT
12935360 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** *
12935425 AATTTACAAGCTATAAAAATGGCATTGGCATGTAGAAATATGAAGATATGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
12935490 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCT
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCT
** * * * *
12935555 TGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCCAGGG
518 CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
* * * * * * * **
12935620 TTGCGGCAGCAAGATCGGCAGCATGCAGAAGGGAACCCGGCCGATTCTCGGCTTGCGCATATCGC
583 TTGTGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * *
12935685 CCTTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
648 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * **
12935750 CCCAGTTTAAGCATACGGAGTTCATTTCTAGTCAAAGATCAAACCGGACCGAGGGTTGCACCAGC
713 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGC
* * * * * * * *
12935815 ACATGCTGGGCTCTGCCATGTGCTAGAGACGCATTTTTCATCGCCAGGGCACCATCACCGGAGCA
778 ACATGCTGGGCTCTGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCA
* *
12935880 TCGTTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCCGA
843 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGG-GGCCGA
* * *
12935933 GGGGGTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCC
* * *
12935998 TCATCCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAG
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
** **
12936063 TAGCCATTAAAGTGTCTGAAATGAAGACACTTTAATCAAATGGTCACAAAATCTTGTACACTTCG
130 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
12936128 AGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCAGGTCTACCAAATTTGG
195 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * * * * *
12936193 GGCCAAAAATCCTTCCGAAAAAGTTTTAAAAAATCCCCAACCGTAAAACGTTTCAAAAATCGAGA
260 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGA
* *
12936258 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAATGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
12936323 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
390 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
12936388 CCCTATCGATCCACGGCTTGCGCATCCCGACTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCTGCCCG
* **
12936453 CCCGCTCATTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGAC
512 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * * * * *
12936518 CGAGGATTGTGAG-AGTAGGAGCGGTAGCACACAGAA-GGGACCCCACCGATCCCCGGCTTGCGC
577 CGAGGGTTGTG-GCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGC
* * * **
12936581 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATATAGA
641 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* *
12936646 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGAACCAGACCAAGGGTTG
706 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTG
* * * * * ** * *
12936711 CGGTAGCACATGCGGGGCTCGGGCTTATGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATC-T
771 CGGCAGCACATGCTGGGCTCTGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGC
* * * * * *
12936775 CGGAGCATCGTCAGAAAACCTGACCGGTGGCATTGGGGTTTCGGCTATCAGGGGGGCCGG
836 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGGCCGA
* * *
12936835 GGGGGTGTACGCACATGATGTGTGATGGGTGCTGGGTGCTGGTACTTGGCCCTTATATTAGCCCC
1 GGGGGTGTGCGCACATGATGTGCGA-------TGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
12936900 GTATCCCTCATCAAACCTCAAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTG
59 -TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
12936965 CTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATA
123 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
12937030 CACTTCGAGTTTTTGGCTGAATTTTTTTTTGCATGCGAACAAAAATACAAGGATCACGTCTACCA
188 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
* * * *
12937095 AGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAATTCCCTAACCGTAAAAAGTTTCAAAA
253 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAA
* *
12937160 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGCCTTAAGGGACCATT
318 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
12937225 ATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCA
383 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA
* *
12937290 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
448 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGC
* * *
12937355 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCAGACC
513 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
* * * * *
12937420 GAGGATTGTGGGAGTAGGAGT-GGCAGCACGCAG-AGGGGACCC-AGCTGATCCCCGGCTTGTGC
578 GAGGGTTGTGGCAGCAGGA-TCGGCAGCACGCAGAAGGGGACCCGA-CCGATCCCCGGCTTGCGC
* * * * * *
12937482 ATCCCGCCCCTCTGGCCAGCAGAGCACCCGCACGCTCGTTTCGTGGTTTGACTTAGGGATACGGA
641 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* *
12937547 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG
706 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTG
* * * ** *
12937612 TGGCTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGCACCATCGC
771 CGGCAGCACATGCTGGGCTCTGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGC
* *
12937677 CGGAGCATCGTCGGAGAACTTGACCGGCAGCATT
836 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
12937711 AAAGTGTCTG
Statistics
Matches: 3913, Mismatches: 480, Indels: 147
0.86 0.11 0.03
Matches are distributed among these distances:
884 5 0.00
885 241 0.06
886 199 0.05
887 14 0.00
890 8 0.00
891 312 0.08
892 3 0.00
894 33 0.01
895 208 0.05
896 792 0.20
897 129 0.03
898 77 0.02
900 3 0.00
901 398 0.10
902 260 0.07
903 305 0.08
904 219 0.06
905 261 0.07
906 1 0.00
907 1 0.00
908 2 0.00
909 442 0.11
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCAT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
TGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACA
TGCTGGGCTCTGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCG
TCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGA
Found at i:12937576 original size:26 final size:26
Alignment explanation
Indices: 12937540--12937590 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12937530 TGACTTAGGG
12937540 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
12937566 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12937591 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:12938300 original size:26 final size:26
Alignment explanation
Indices: 12938270--12938322 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12938260 GTTGACTTAG
* *
12938270 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
*
12938296 GCATACGGAGTTTAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
12938322 G
1 G
12938323 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:12939204 original size:26 final size:26
Alignment explanation
Indices: 12939168--12939220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12939158 GTTGACTTAG
12939168 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12939194 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12939220 G
1 G
12939221 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12940111 original size:26 final size:26
Alignment explanation
Indices: 12940082--12940134 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12940072 GTTGAGTTAG
12940082 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12940108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12940134 G
1 G
12940135 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12940128 original size:914 final size:896
Alignment explanation
Indices: 12937707--12940845 Score: 4218
Period size: 914 Copynumber: 3.5 Consensus size: 896
12937697 TGACCGGCAG
* *
12937707 CATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
1 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * ** *
12937772 TTTAGCTGAATTTTTTGGTTCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCT
66 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
12937837 AAAAATCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTT-TGAAAATCGTGAAAA
131 AAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTCTGAAAATCTTGAAAA
* *
12937901 ATAGAAAATGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
195 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
12937966 ACAAGCCATAAAAATGGCATTGGCA-TGCAAAAATATGGAA-ATGTGCCAAAACCCACCTACCAT
260 ACAAGCCATAAAAATGGCATTGGCACAGCAGAAATAT-GAAGATGTGCCTAAACCCACCTACCAC
* * * * *
12938029 CCTATTGATCCACGACTTGCGCACCCCGTCTCTCTGGCTGATGTAGTGCCCACCCGT----C-CG
324 CCTATCGATCCACGACTTGCGCATCCCGTCTCTTTGGCAGA--TAGTGCCCGCCCGTCGCCCGCG
* * * ** * *
12938089 CTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAA
387 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAG
* * * * * *
12938154 GGTTGTGGCAAG-AGTATCGACAACATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCC
452 GGTTGCGG-TAGCAGAATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * *
12938218 CGCCCTTATGGCCGGCAGAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATATGGAGTTC
516 CGCCCTTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
12938283 ATTCCCAGTCTAAGCATACGGAGTTTAGTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGC
581 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGAC
* *
12938348 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGAGGAA
646 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGCGG-A
* *
12938413 GTATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATAGGGGGCCGGGGGGTGTGCGC
710 GTATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATAGGGGGCAGGGGGGTGTGCGC
*
12938478 ACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCTTCATCAAACCTT
775 ACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCTTCATCAAACCTC
12938543 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
840 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * * * *
12938600 AATCAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTCTACACTTTGAGTT
1 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
** *
12938665 TTTAGCTGAATTTTTTTACGCATGCCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
12938727 AGAACTCCTTCCGAAAAAGTTTTAAAAAATCTCAAACCGCAAAATGTTT-TGAAAATCTTGAAAA
131 AAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAA-GTTTCTGAAAATCTTGAAAA
* *
12938791 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTG
195 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
**
12938856 ACAAGGTATAAAAATGGCATTGGCAC-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
260 ACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** * * * * * *
12938920 CTATCGATTTACGGCTTGCGTATCCCGTTTCTTGGGTC-GGTGCAGTGCCTGCCCGTCCGCCCGC
325 CTATCGATCCACGACTTGCGCATCCCGTCTCTTTGG-CAGAT--AGTGCCCGCCCGT-CGCCCG-
*
12938984 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAAATC
385 -CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATC
** ** * * * *
12939049 GAGGGTTGCAATAGCAGAATCGGTAGCACGTAGAGGGGGACTCGATCGATCCTCGGCTTGCGCAT
449 GAGGGTTGCGGTAGCAGAATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * *
12939114 CCCGCCCTTTTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
514 CCCGCCCTTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
12939179 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCG
579 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTG
*
12939244 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTC
644 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGGCACCATCG-C
* ** * * * * *
12939308 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTACAATGATCGGGGGGTCGGGGGGGTG
707 GGAGTATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-AGGGGG-CAGGGGGGTG
* * *
12939373 TGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCTCTTATATTGGCCCTCTATCCCTCATCAA
770 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCTTCATCAA
* *
12939438 ACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGC
835 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
12939500 CATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
1 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
12939565 TTTAGCT-AATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** *
12939629 AAAAGTTTGGGGTCGAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAACTTTCT-
131 --AA-----------AAA-TCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAGTTTCTG
* *
12939693 AAAATCTTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACC
182 AAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
12939758 ATTGTATGAATTTACAACCCATAAAAATGGCATTGGCACAG-AGAAATATGAAGATGTGCCTAAA
247 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAA
* * *
12939822 CCCACCTACCA-CCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCAGCATACTGCCCGC
312 CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTTTGG-CAG-ATAGTGCCCGC
*
12939886 CCGCTCGCCCGCTTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
375 CCG-TCGCCCGC--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
12939951 TCGGACCCAACCGAGGGTTGCGGTAGCAGGATCAACAGCATGCAGAGGGGGACCCGACCGATCCC
437 TCGGACCAAATCGAGGGTTGCGGTAGCAGAATCGACAGCATGCAGAGGGGGACCCGATCGATCCC
* ** * * * ** * *
12940016 CAGCTTGCAAATCCCACCCCTCTGGCCAACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGAGTTA
502 CGGCTTGCGCATCCCGCCCTTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
12940081 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA
567 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* *
12940146 CCGAGGGTTGTGCCAGCACATGCTGGGCTCGGTCATGTGCTGGTGCCGCATTTTTCTTCGCAGGG
632 CCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGG
* * * * *
12940211 GCACCATCGCGAAAGTATCGTCGGAGAACCTGGCTGGCGACATTGGGGTTCCGACGATAGGGGGC
697 GCACCATCGCG-GAGTATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATAGGGGG-
* * *
12940276 CAGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTAT
760 CAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTAT
** *
12940341 CCTTCATCAAACCTCGAGAACTCACACCCGTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGC
825 CCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
12940406 CAGTAGC
890 CAGTAGC
* * *
12940413 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTTGAATT
1 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
12940478 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
12940543 AAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGGACCGCAAAAAGTTTC--AATAAT-TGTGAA
131 AAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCG-TAAAAGTTTCTGAA-AATCT-TGAA
12940605 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
193 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
12940670 TTATAAGCCATAAAAATGGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
258 TTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
12940734 CCCTATCGATCCACGACTTGTGCATCCCATCTATCTGGCCGAT-GTAG--AG-CC--CG-CC-CG
323 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTTTGGCAGATAGT-GCCCGCCCGTCGCCCGCG
* *
12940791 CTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
387 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
12940846 TCGGACTGAG
Statistics
Matches: 1979, Mismatches: 215, Indels: 107
0.86 0.09 0.05
Matches are distributed among these distances:
888 1 0.00
889 7 0.00
890 271 0.14
891 1 0.00
892 1 0.00
893 106 0.05
894 2 0.00
895 1 0.00
897 4 0.00
898 316 0.16
899 47 0.02
900 232 0.12
901 142 0.07
902 45 0.02
904 1 0.00
912 3 0.00
913 201 0.10
914 422 0.21
915 138 0.07
916 38 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAGTTTCTGAAAATCTTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGACTTGCGCATCCCGTCTCTTTGGCAGATAGTGCCCGCCCGTCGCCCGCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTT
GCGGTAGCAGAATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
TTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGCGGAGTATCG
TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATAGGGGGCAGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
Found at i:12941528 original size:210 final size:211
Alignment explanation
Indices: 12941158--12941549 Score: 642
Period size: 210 Copynumber: 1.9 Consensus size: 211
12941148 ACATTTTTCC
*
12941158 AAATGGTCCACAAAATCTTGTACACTTTGAGTTTTTCGCTGAATTTTTTTATGCACGCCAACAAA
1 AAATGGTCCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTATGCACGCCAACAAA
* * *
12941223 AATAAAAGGATCACATCTATCAAGTTTGGGGCCAAAACTCCTGCCCAAAAAATTTTAAAAAATCT
66 AATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTGCCAAAAAAATTTTAAAAAATCT
* *
12941288 CGAACCGCAATAAGTTTCAAAAATCATGAAAAATAGAAATCGAGTCGTCTTGTACACTTTTTTCA
131 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTACACTTTTTTCA
12941353 AATGGGGACACAATCG
196 AATGGGGACACAATCG
* * *
12941369 AAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAA
1 AAATGGTCCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTATGCACGCCAACAAA
** * *
12941433 AATAAAAGGATCATGTCTACCAAGTTTGGGGCTAAAAATCCTTCCAAAAAAATTTTAAAAAATCT
66 AATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTGCCAAAAAAATTTTAAAAAATCT
**
12941498 CGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
131 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
12941550 CCATGAAACT
Statistics
Matches: 166, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
210 159 0.96
211 7 0.04
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (211 bp):
AAATGGTCCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTATGCACGCCAACAAA
AATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTGCCAAAAAAATTTTAAAAAATCT
CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTACACTTTTTTCA
AATGGGGACACAATCG
Found at i:12942658 original size:26 final size:26
Alignment explanation
Indices: 12942628--12942680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12942618 GTTCACTTAG
*
12942628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
12942654 GCATACAGAGTTCATTCTTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12942680 G
1 G
12942681 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12944067 original size:874 final size:874
Alignment explanation
Indices: 12941724--12944123 Score: 3068
Period size: 894 Copynumber: 2.7 Consensus size: 874
12941714 TCCGCCCGAC
* * * * * **
12941724 CGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATGG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * **
12941788 AGGGTTGCGGCAGTACATGCTAGGCTCGGGCATGTGCTGGTGTCGCATCTTTCTTCGTCGGGAAA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCA
* * *
12941853 CCATAGGCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGAGTTCCGACGATCGGGGGGAAC
131 CCAT-GTCG-AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-AC
* ** * *
12941918 GGGGGGGGGTGTACGCACATGATGTGTGATGGGTATTGGTATTTGGCCTTTATATTGGCCCCCTA
193 ---GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
12941983 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
255 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
12942048 CCAGTAGCCA-TAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACAC
320 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** * *
12942112 TTCAAGTTTTTAGCTGATTTTTTTTTTGCATGCCAACAAAAATGCAAGGATCATGTCTACCAAGT
385 TTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
* * * * *
12942177 TTGGGGCCAAAACTCCTTTCGAAAAAAATTTAACAAATCCCGAACCGTAAAAAGTTTCAAAAATC
450 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATC
* *
12942242 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGAA
515 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
12942307 TGAATTTACAAGCCATAAAAATGGGATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
580 TGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGAAGATGTGCCTAAACCCACCT
*
12942372 ACCACCCTATCGACCCACGGCTTACGCATCCCGTTTCACTGGCCGACATAGTGCCCGCCCGCCCG
645 ACCACCCTATCGACCCACGGCTTACGCATCCCGTCTCACTGGCCGACATAGTGCCCGCCCGCCCG
* * * *
12942437 CCCGGTCTACCAAGTTTCATCGTTTAGCTTAGGCATATAGAGTTCATTTCCAGTCTAAGATTGGA
710 CCCGGTCTA-C-AGTTTCATCGTTTAGCTTAGGCATAGAGAGTTCATTCCCAATCTAAGATCGGA
* * *
12942502 CTAGACTGAGGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGTGACCTGACCGATCCTCGGCT
773 CTAGACTGAGGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGTGACCCGACCGAACCCCGGCT
* * *
12942567 TGCCCATCTCGCCCCTATGGCCGGCTGAGAGCCCGTA
838 TGCCCATCGCGCCCCTATGGCCGGCTAAGAGCCCGCA
* * *
12942604 CGCTTGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T--A-AG---A-
*
12942669 TCTTAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCACAAGCTGGGCTCGGGCATGTGCTG
53 TC---G-----G-----ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* *
12942734 GGGCCGCATTTTTCTTCGTCGGGGCACCA--TC--G---C--CGGAGAACCTGACCGACGGCATT
105 GTGTCGCATTTTTCTTCGTCGGGGCACCATGTCGAGCATCGTCGGAGAACCTGACCGACGGCATT
** * * ** **
12942790 GGGGTTTTGACGATCGGGGGTGCCAGGGGGTGTGCGCACATGATGTGCCATCAGTGCTGGTACTT
170 GGGGTTCCGACGATCGGGGG-GACGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
* * *
12942855 GGCCCTTATATTGGCCCCTTATCCC-CATCAAACTTTGAGAACTCACAGCCCCTTAAAGAGCATT
234 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
12942919 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
299 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
12942984 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGGAAGCCAA-AGAAATA
364 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACA-AAA-A
* *
12943048 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG
427 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
* * *
12943113 AACCGCAAAAA-TTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTAC
492 AACCGTAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
12943177 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACATAAAAAT
556 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAAT
* * ** * * *
12943242 ATGAATATGTGCCTACACCCACCTACCACCCTATCGGTCCACGGCTTGCGCATTCCGTCTCTCTG
621 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTACGCATCCCGTCTCACTG
* *
12943307 GCCGGCGTAGTGCCCGCCCGCCCGCCC-G-CT-C-GTTTCATC-TGTT-GCCTTAGGCATACGA-
686 GCCGACATAGTGCCCGCCCGCCCGCCCGGTCTACAGTTTCATCGT-TTAG-CTTAGGCATA-GAG
* * * * * *
12943365 AGTTCATTCCCAATCTAAGATCGTA-TCGGA-TCGAGGGTTGTGGCCGTAGGATTGGCAGCACGC
748 AGTTCATTCCCAATCTAAGATCGGACT-AGACT-GAGGATTGTGGCAGCAGGATCGGCAGCACGC
* * * * *
12943428 AGAAGGG-GTCCCGACTGAACCCCGGCTTGCGCATCGCGCCCCTCTGGCCGGTTAAGCA-CCCGC
811 AG-AGGGTGACCCGACCGAACCCCGGCTTGCCCATCGCGCCCCTATGGCCGGCTAAG-AGCCCGC
12943491 A
874 A
* * * *
12943492 TGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTGCATTCCCAGTCTAAGATCGGACCGGACCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* ** * * **
12943557 ATGGTTGCGATAGCGCATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCA
* *
12943622 CCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGAGGGGTC
131 CCAT-GTC-GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGAC
*
12943687 GGGGGCGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
193 GGGGG-GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
12943752 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCC
257 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
12943817 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTT
322 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
12943882 TGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTATACCAAGTTT
387 TGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
* * * *
12943947 GGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTTGATAATCGT
452 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGT
* * * *
12944012 GAAAAATAGAAAACGTGTTGTTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
517 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* **
12944077 AATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAT
582 AATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGAAGAT
12944124 CAGGCATGTG
Statistics
Matches: 1316, Mismatches: 149, Indels: 116
0.83 0.09 0.07
Matches are distributed among these distances:
862 66 0.05
865 2 0.00
867 1 0.00
868 1 0.00
871 1 0.00
872 1 0.00
873 43 0.03
874 237 0.18
875 159 0.12
876 2 0.00
879 2 0.00
880 19 0.01
881 21 0.02
882 1 0.00
883 2 0.00
886 2 0.00
887 5 0.00
888 155 0.12
889 7 0.01
890 3 0.00
892 71 0.05
893 147 0.11
894 257 0.20
896 40 0.03
897 2 0.00
898 1 0.00
901 1 0.00
902 1 0.00
904 1 0.00
907 65 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (874 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCA
CCATGTCGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGACGGG
GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
TTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGCCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGACCCACGGCTTACGCATCCCGTCTCACTGGCCGACATAGTGCCCGCCCGCCCGCCCGGT
CTACAGTTTCATCGTTTAGCTTAGGCATAGAGAGTTCATTCCCAATCTAAGATCGGACTAGACTG
AGGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGTGACCCGACCGAACCCCGGCTTGCCCATC
GCGCCCCTATGGCCGGCTAAGAGCCCGCA
Found at i:12944959 original size:26 final size:26
Alignment explanation
Indices: 12944923--12944975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12944913 GTTGACTGAG
* *
12944923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
12944949 GCATACAGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12944975 G
1 G
12944976 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12945871 original size:26 final size:26
Alignment explanation
Indices: 12945831--12945883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12945821 GTTGACTTAG
*
12945831 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
12945857 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12945883 G
1 G
12945884 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:12947668 original size:26 final size:26
Alignment explanation
Indices: 12947638--12947690 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12947628 GTTGTCTTAG
*
12947638 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12947664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12947690 G
1 G
12947691 ATCAAATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12950712 original size:896 final size:893
Alignment explanation
Indices: 12949391--12954561 Score: 6418
Period size: 896 Copynumber: 5.9 Consensus size: 893
12949381 GTTGACTTAG
* * * *
12949391 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACAGAAGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12949456 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTC-G---------G-AGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAACATCACCGAAGA
* * * ** * *
12949510 ACCTGACCGGCGGCATTGGGGTTCCAGTAATCGGGGGGGCCGGTGGGGGTGTGCACCCATGATGT
131 ACCTGACCAGCTGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* *
12949575 GCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * *
12949640 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGTTGCCAGTAGCTATTAAAGTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12949705 TGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12949770 GTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
12949835 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATTGAAAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATTG--AAAAATAGAAAACGAGTCGTCT
*
12949900 TGCCAAGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12949965 ATTGGCACATAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACAGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** *
12950030 GCATCCCGTCTCTCTATCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCG
648 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
12950095 TACGAAGTTCATTCCCAGTATAAGATCGGATCAGACTGAGGGTTGTGGGAGCAGGAACGGTAGCA
713 TACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
* * * * * * *
12950160 CACAGATGGGGACCCAGCCGACCCCCGACTTGCCCGTCCTGCCCTTCTGGCCGACTAAGCACCCG
778 CGCAGAGGGGGACCC-GTCGATCCCCGACTTGCCCGTCCTGCCCCTCTGGCCGACTGAGCGCCCG
* *
12950225 CACGCTCGTTTCGTGGGTTGACTTAGGCATGCCGAGTTCATTCCCAGTCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
12950277 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACAGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12950342 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCTAGGGCACTATCGTCGGAACATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAACATCACCGAAGA
* * *
12950407 ACCTGACCAGCTGCATTGAGGATCCGGCGATC-GGGGGGCCAAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCAGCTGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
*
12950471 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
12950536 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12950601 TGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12950666 ATGCACGCCAACAAAAATACCAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAGA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
12950731 AATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCCT-GAACCATAAAAAGTTTCAAAAAT--TGAAAAATAGAAAACGAGTCGTC
* *
12950795 TTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
12950860 CATTGGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12950925 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCACCTGCTCATTTCGTCGATTG
647 CGCATCCCGTCTCTCTGGCCGGCATAGT----GCCCACCCG--C-CC-GCTCGTTTCGTCGGTTG
* ****
12950990 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAATAGCAGGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGA
*** * * * * * **
12951055 TTTACAGCACGCAGAGGGGGACCCGGCCGATCTCCGACTTGCGCATCCTACCCCTCTGGCCGGTT
769 TCGGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGACTTGCCCGTCCTGCCCCTCTGGCCGACT
* * * *
12951120 GAGCGCCCGCACGCTCTTTTCGTGGGTTGTCTTAGGCATACAGAGTTCTTTGCCAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** * * *
12951181 GCATACGGAGTTCTTTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12951246 CTCGGGCGTGTGTTGGTGCCGTATTTTTCTTCG-TCGGGGCACCATCG-CCGAAGCATCACCGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGTCGGAA-CATCACCGAA
* * * *
12951309 GAACCTGACC-GGTGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCAGCT-GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * * * *
12951373 GTGCAATGGCTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAATCCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * * *
12951438 CACACCCCCTTAAAGAGCGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGG
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12951503 AATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGATATTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTT
* * * *
12951568 TTTA-GCATGCCAACAAAAATACAGGGATCACGTCTACCGAGTTTGGGCCCAAAACTCCTTCCAA
387 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
12951632 AAAAATTTTAAAAAATCCTGAACC-------G---C----------------AAAAC-A----T-
452 AAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATTGAAAAATAGAAAACGAGTCGTC
12951665 TT--CAA-AAA--T--CGTGAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 TTGCCAAGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * *
12951723 GCATTGGCATGTAGAAGTATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12951788 GCGCATCACGTCTCTCTGGCCAGCGTAGTG-CCAGCCCGCCCACCCGCTCGTTTCGTCTGTTGGC
646 GCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCA-CCCG----CCCGCTCGTTTCGTCGGTTGGC
* * ** * * * **
12951852 ATAGGCTTACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATC
* * * * * *
12951917 GACAGCACGCAGAGTGGGACCCGATCGATCCCCGGCTTG--CGTATCTCACCCCTCTGGCCGACC
771 GGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGACTTGCCCGT-CCT-GCCCCTCTGGCCGACT
* * *
12951980 GAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * * * *
12952041 GCATTTGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
12952106 CTTGGGCAAGTGCTGGTG-AGACATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGCT-GGGGCACCATCGTCGGAACATCACCGAA
* * *
12952169 GAACCTGACCAGC-GACATTGGGGCTCCGACGATCGAGGGGGCCGGTGGGGGTGTGCGCACATGA
129 GAACCTGACCAGCTG-CATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGA
* *
12952233 TGTGC-AGTGGGTGCTGGTACGTGGCCCTTATATT-ACCCCCTATCCCTCATCAAACCTTGAGAA
192 TGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
*
12952296 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * * * * *
12952361 GAAATGAGGACACTTTTTCCGAATGGTCACAAAGTCTTTTACACTTCAAATTTTTAGCT-CATTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
12952425 TTTTTTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
386 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
12952490 AAAAAATTTTAAAATATCTTGAACCGTAAAAAGCTTCAAAAATCGTAAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAAT--TGAAAAATAGAAAACGAGTC
**
12952555 ACCTTGCCATA-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 GTCTTGCCA-AGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
12952619 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCAACGA
578 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * * * * *
12952684 CTTGCGCTTCTTGTCTTTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTTTCGTAGGTTGG-TT
643 CTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
12952748 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCCAGGGTTGTGGCAGCAGGATCGG
708 AGGCATACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * *
12952813 CAGCACGCAGAGGGGGTCCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
773 CAGCACGCAGAGGGGGACCCG-TCGATCCCCGACTTGCCCGTCCTGCCCCTCTGGCCGACTGAGC
* **
12952878 GCCCGTACGCTCGTTTCGTCAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
12952935 G-AT-C-G-G---A----C---C----A---GACC-GA---A-GGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12952974 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-G---------G-AGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAACATCACCGAAGA
* * ** * *
12953028 ACCTGACCGGCGGCATTGGGGTTCCGGTAATCGGGGGGGCCGGGGGGGGTGTGCACCCATGATGT
131 ACCTGACCAGCTGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* *
12953093 GCGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTTAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * *
12953158 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGAGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12953223 TGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
12953288 GTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
12953353 AATTTTTAAAAATCCTGAACCACAAAAAGTTTTGAAAATTGAAAAAAATAGAAAACAAGTCGTCT
455 AATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATTG--AAAAATAGAAAACGAGTCGTCT
* *
12953418 TGCCAAGAAACTTGACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
12953483 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
**
12953548 GCATCCCGTCTCTCTATCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
648 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
12953613 TACGAAGTTCATTCCCAATATAAGATCGGATCAGACTGAGGGTTGTGGGAGCAGGAAT-GGTAGC
713 TACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGG-ATCGGCAGC
* * * * * *
12953677 ACGCAGATGGGGACCCAGTCGACCCCCGGCTTGCCCGTCCTGCCCTTCTGGCTGACTAAGCGCCC
777 ACGCAGAGGGGGACCC-GTCGATCCCCGACTTGCCCGTCCTGCCCCTCTGGCCGACTGAGCGCCC
* *
12953742 TCACGCTCGTTTCGTGGGTTGACTTAGGCATGGCA-AGTTCATTCCCAGTCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCAT-ACAGAGTTCATTCCCAGTCTAA
* * * * * *
12953795 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACAGCAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12953860 CTCGAGAATGTGCTGGTGCCTCATTTTTCTTCGCTAGGGCACCATCGTCGGAACATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAACATCACCGAAGA
* * * * *
12953925 ACCTGACCAGCTGCATTGAGGATCCGGTGATC-GGGGGGCCAAGGGGGGTGTGCGCACAAGATGT
131 ACCTGACCAGCTGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
*
12953989 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
**
12954054 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATCTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12954119 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTCTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * **
12954184 AAGCATGCCAAAAAAAATACAAGGATCACATCAACCAAGTTTGGCGCCAAAACTCCTTCTAAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
12954249 AATTTTAAAGAATTCTGAACCGCT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCCTGAACC-ATAAAAAGTTTCAAAAAT--TGAAAAATAGAAAACGAGTCGTC
* *
12954313 TTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
12954378 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12954443 CGCATCCCATCTCTCTGGCTGGCATAGTACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * **
12954508 ATACGGAGTTCTTTCCCAATATAAGATCGGACCGGACCGAGGGTTACGGCAGCA
712 ATACGGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGCAGCA
12954562 CAAGCTGGGC
Statistics
Matches: 3699, Mismatches: 445, Indels: 272
0.84 0.10 0.06
Matches are distributed among these distances:
857 83 0.02
858 154 0.04
859 370 0.10
860 606 0.16
861 60 0.02
862 3 0.00
863 5 0.00
864 132 0.04
865 1 0.00
866 1 0.00
867 5 0.00
868 63 0.02
869 3 0.00
870 2 0.00
871 2 0.00
872 2 0.00
873 4 0.00
874 1 0.00
875 1 0.00
876 6 0.00
878 1 0.00
880 1 0.00
881 3 0.00
882 2 0.00
883 1 0.00
885 1 0.00
886 161 0.04
887 8 0.00
888 1 0.00
890 1 0.00
891 1 0.00
893 4 0.00
894 161 0.04
895 22 0.01
896 1022 0.28
897 60 0.02
898 5 0.00
899 129 0.03
900 14 0.00
902 1 0.00
903 9 0.00
904 570 0.15
905 17 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAACATCACCGAAGA
ACCTGACCAGCTGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATTGAAAAATAGAAAACGAGTCGTCTTGC
CAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGTCGATCCCCGACTTGCCCGTCCTGCCCCTCTGGCCGACTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:12951185 original size:26 final size:26
Alignment explanation
Indices: 12951155--12951207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12951145 GTTGTCTTAG
12951155 GCATACAGAGTTCTTTGCC-AGTCTAA
1 GCATACAGAGTTCTTT-CCTAGTCTAA
*
12951181 GCATACGGAGTTCTTTCCTAGTCTAA
1 GCATACAGAGTTCTTTCCTAGTCTAA
12951207 G
1 G
12951208 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCTTTCCTAGTCTAA
Found at i:12951486 original size:904 final size:893
Alignment explanation
Indices: 12948154--12954552 Score: 6408
Period size: 896 Copynumber: 7.2 Consensus size: 893
12948144 TTTCGAAAAT
***
12948154 CGTGAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
1 CGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * *
12948219 GTATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTC
65 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * *
12948284 TGGCCGGCGTAGTGCCCGCCTGCCCACCCGCTCGTTTCATCGGTTGGCATAGGCTTACGGAGTTC
130 T-GTCGGCATAGTG--C-CC-GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
* * * * * ** * * *
12948349 ATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGGCAGCATGCAGAGTGG
190 ATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGGAGCAGGATCGGCAGCACGCAGAGGGG
* * * * * * ** *
12948414 GACCCGACCGATCCCCGGCTTGCGCAT-CTCACCCCTCTGGGCAACCAAGTGCCCGCACGCTCGT
255 GACCCGGCCGACCCCCGACTTGCGCATCCT-GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
* * ** *
12948478 TTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATTTGGAGTTCATTCCCAAT
319 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGT
** * * * **
12948543 CTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGGGCAAGTGCTGGTGCAAC
383 CTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* ** * ** * *
12948608 ATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGC
447 ATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCACCGAAGAACCTGACCGGCGGCATTGGGG-
* * * *
12948673 TT-CGGCGATCGGGGGGGCC-GGTGGGGGTGTGCGCACATGATGTGTGGTGGGTGCTGGTACGTG
511 TTCCGACGATC-GGGGGGCCAGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
12948736 GCCCTTATATT-ACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
574 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* * ** *
12948800 GAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATAAGGACACTTTTTTCGAAT
639 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
** * * * * * *
12948865 GGTCACAAAGCCTTTTACACTTCGAATTTTTAGCTCATTTTTTTTTTGCATGCCAAAAAAAATAC
704 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
* *
12948930 AAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCT-TGAA
769 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTGAA
* * * **
12948994 CCGTAAAAAGCTTCGAAAATCGTAAAAAATAGAAAACGAGTCACCTTGCCATGAAACTTCA
834 CCGTAAAAAGTTTCAAAAATC-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
12949055 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGAGAAA
1 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* *
12949120 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCT
66 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* ** ** * * *
12949185 GGCCGGGGTAGTGCCCGCCCGCTTGCTCGTTTCGTAGGTTGGCTTAGACATACGGAGTTCATTCC
131 -GTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
12949250 CAGTCTAAGATTGGACCAGACCCAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGTCTC
195 CAGTATAAGATCGGACCAGACCGAGGGTTGTGGGAGCAGGATCGGCAGCACGCAGAGGGGGACCC
** * * * * *
12949315 GATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTC
260 GGCCGACCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
* * *
12949380 AGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-AT-C--AG---A---C---C----A-
325 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGAT
*
12949427 -GA-CAGA---A-GGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCGCATTTTTCT
390 CGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
12949486 TCGTTGGGGCACCAT---C---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTCC-A-GT
455 TCGTCGGGGCACCATCGCCGAAGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACG-
* *
12949538 AATCGGGGGGGCC-GGTGGGGGTGTGCACCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
519 -ATC-GGGGGGCCAGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
12949602 TTTTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTT
581 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
12949667 TACAGGTTTGTTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATTGTCACA
646 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
12949732 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATC
711 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* * *
12949797 ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CCGAACCATAAA
776 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTGAACCGTAAA
** *
12949861 AAGTTTTGAAAAT-TGAAAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCA
841 AAGTTTCAAAAATCTG--AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
12949915 CCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
1 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* *
12949980 TATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCT
66 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
12950045 ATCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGAAGTTCATTCC
131 GT-CGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
12950110 CAGTATAAGATCGGATCAGACTGAGGGTTGTGGGAGCAGGAACGGTAGCACACAGATGGGGACCC
195 CAGTATAAGATCGGACCAGACCGAGGGTTGTGGGAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * * *
12950175 AGCCGACCCCCGACTTGCCCGTCCTGCCCTTCTGGCCGACTAAGCACCCGCACGCTCGTTTCGTG
260 GGCCGACCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
* *
12950240 GGTTGACTTAGGCATGCCGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
325 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGA
* * * * *
12950305 TCGGATCAGACCGAGGGTTACAGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
389 TC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * * * *
12950370 CTTTG-CTAGGGCACTATCGTCGGAA-CATCACCGAAGAACCTGACCAGCTGCATTGAGGATCCG
453 CTTCGTC-GGGGCACCATCG-CCGAAGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCG
* * *
12950433 GCGATCGGGGGGCCAAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
516 ACGATCGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
12950498 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
581 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
12950563 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACA
646 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
12950628 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCACGCCAACAAAAATACCAGGATC
711 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* *
12950693 ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAGAAATTTTAAAAAATCTC-GAACCGTAAA
776 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTGAACCGTAAA
*
12950757 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCA
841 AAGTTTCAAAAATC-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
**
12950811 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
1 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
*
12950876 TATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
66 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
12950941 GGTCGGCGTAGTGCCCGCCCGCCCGCCCACCTGCTCATTTCGTCGATTGGCTTAGGCATACGGAG
131 -GTCGGCATAGT----GCCCGCCCG--C-CC-GCTCGTTTCGTCGATTGGCTTAGGCATACGGAG
* **** ***
12951006 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAATAGCAGGATTTACAGCACGCAGAG
187 TTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGTGGGAGCAGGATCGGCAGCACGCAGAG
* * * **
12951071 GGGGACCCGGCCGATCTCCGACTTGCGCATCCTACCCCTCTGGCCGGTTGAGCGCCCGCACGCTC
252 GGGGACCCGGCCGACCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * * * *
12951136 TTTTCGTGGGTTGTCTTAGGCATACAGAGTTCTTTGCCAGTCTAAGCATACGGAGTTCTTTCCTA
317 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-A
* * * * * *
12951201 GTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGTACATGCTGGGCTCGGGCGTGTGTTGGTGCC
381 GTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
12951266 GTATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCACCGAAGAACCTGACCGGTGGCATTGGG
445 GCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCACCGAAGAACCTGACCGGCGGCATTGGG
* * * *
12951331 GTTCCGACGATCAGGGGGGTC-GGGGGGGTGTGCGCACATGATGTGCAATGGCTGCTGGAACTTG
510 GTTCCGACGATC-GGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
12951395 GCCCTTATATTGGCCCCCTATCCCCCATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCGTTT
574 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
12951460 GAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAAA
639 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
12951525 GGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGATATTTTTTTA-GCATGCCAACAAAAATA
704 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTATGCATGCCAACAAAAATA
* * * *
12951589 CAGGGATCACGTCTACCGAGTTTGGGCCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CTGA
768 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTGA
* * ** * * * *
12951653 ACCGCAAAACA-TTTCAAAAATCGTG--AAA-GGCTTAA-GGGAC--CATTG-TATG-AA-TTTA
833 ACCGTAAAA-AGTTTCAAAAATC-TGAAAAATAG-AAAACGAGTCGTC-TTGCCATGAAACTTCA
* * * * * * * * * * * *** *
12951708 C---AAGCCATAAAAATGG--CATTG---GCATGTAGAAG-TATGAAGAGGTGCCTAAACCCACC
1 CGTGAAGGC-T--TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG-GCATTGGCACA-C
* ** * * * * * * *
12951764 TACCACCCTATCGATCCACGGCT-TGCGC-ATCACGTCTCTCTGGCCAGCGTA--G-TGCCA--G
61 -A-GA-AATAT-GA---A--GATGTGC-CTA-AAC-CCAC-CT-ACCACCCTATCGAT-CCACGG
** * * * ** ** **
12951822 CCCGCCCA-CCCGCTCGTTTCGTCTGTTGGCATAG-GCTTACG-GAGTTCATTC-TTAGTCTAAG
111 CTTGCGCATCCCG-TC---TC-TCTGTCGGCATAGTGC--CCGCCCGCCCGCTCGTT--TC---G
** ** ** * * * ** * * * *
12951883 ATCAGACCGGACCGAGGGTTACGGCAG--CAGGATCGACAGCACGCAGAGTGGGACCCGATCGAT
164 -TC-GATTGG-CTTAGGCATACGG-AGTTCA--TTC-CCAGTA-TAAGA-TCGGACCAGACCGAG
**** *** * * * *** ** * * * **
12951946 CCCCG-GCTTGC-GTATC-TCA-C-CCCTCTGGCCGA-CCGAG-C-ACCCGC-AC--GCTCGTTT
220 GGTTGTGGGAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-GCCGACCCCCGACTTGCGCATCC
* ** * *** * * * *
12952000 TG----T-GGGTTGACTTAG-GCATACA-G--AG-TTC----ATT--CCTAGTC-T--A-AG--C
284 TGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
*** * * * *
12952043 ATTTGGAGT-T---CAT------TC----CCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCA
349 ATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCA
* * * * * *
12952094 GCACATGCTAGGCTTGGGCAAGTGCTGGTG-AGACATTTTTCTTCGTCGGGGCACCATCGTCGGA
413 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGCCGAA
** * * * *
12952158 GCATCGTCGGAGAACCTGACCAGCGACATTGGGGCTCCGACGATCGAGGGGGCC-GGTGGGGGTG
477 GCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCAGG-GGGGGTG
* *
12952222 TGCGCACATGATGTGC-AGTGGGTGCTGGTACGTGGCCCTTATATT-ACCCCCTATCCCTCATCA
540 TGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
12952285 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCA
604 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * * * * *
12952350 TTAAAGTGTCTGAAATGAGGACACTTTTTCCGAATGGTCACAAAGTCTTTTACACTTCAAATTTT
669 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
12952415 TAGCT-CATTTTTTTTTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAA
734 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
12952479 AACTCCTTTCGAAAAAATTTTAAAATATCT-TGAACCGTAAAAAGCTTCAAAAATCGTAAAAAAT
799 AACTCCTTCCGAAAAAATTTTAAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATC-TGAAAAAT
** *
12952543 AGAAAACGAGTCACCTTGCCATAAAACTTCA
863 AGAAAACGAGTCGTCTTGCCATGAAACTTCA
12952574 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
1 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* * * * ** *
12952639 TATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCAACGACTTGCGCTTCTTGTCTTTCT
66 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * *
12952704 GGCCGACGTAGTGCCCGCCCGCTCGCTCGTTTCGTAGGTTGG-TTAGGCATACGGAGTTCATTCC
131 -GTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
12952768 CAGTCTAAGATTGGACCAGACCCAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGTCCC
195 CAGTATAAGATCGGACCAGACCGAGGGTTGTGGGAGCAGGATCGGCAGCACGCAGAGGGGGACCC
** * * * *
12952833 GATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCGTC
260 GGCCGACCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
*
12952898 AGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---C---C----A-
325 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGAT
* *
12952945 -GACC-GA---A-GGTTGCTGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCGCATTTTTCT
390 CGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * ***
12953004 TCGCCGGGGCACCAT---C---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTAA
455 TCGTCGGGGCACCATCGCCGAAGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
12953058 TCGGGGGGGCCGGGGGGGGTGTGCACCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
520 TC-GGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
12953123 CGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTAC
584 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
12953188 AGGTTTGCTGCCAGTAGCTATTAAAGAGTTTGAAATGGGGACACTTTTTTCAAATTGTCACAAAA
649 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
12953253 TCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATG
714 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACG
* * * **
12953318 TCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTTAAAAATC-CTGAACCACAAAAAG
779 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTGAACCGTAAAAAG
** * * *
12953382 TTTTGAAAAT-TGAAAAAAATAGAAAACAAGTCGTCTTGCCAAGAAACTTGA
844 TTTCAAAAATCTG--AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
12953433 CCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
1 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
12953498 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
66 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
12953563 ATCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCC
131 GT-CGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
12953628 CAATATAAGATCGGATCAGACTGAGGGTTGTGGGAGCAGGAAT-GGTAGCACGCAGATGGGGACC
195 CAGTATAAGATCGGACCAGACCGAGGGTTGTGGGAGCAGG-ATCGGCAGCACGCAGAGGGGGACC
* * * * * * * * *
12953692 CAGTCGACCCCCGGCTTGCCCGTCCTGCCCTTCTGGCTGACTAAGCGCCCTCACGCTCGTTTCGT
259 CGGCCGACCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
*
12953757 GGGTTGACTTAGGCATGGCA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
324 GGGTTGACTTAGGCAT-ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAA
* * * * * * * * *
12953821 GATCGGATCAGATCGAGGGTTACAGCAACACATGCTAGGCTCGAGAATGTGCTGGTGCCTCATTT
387 GATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * *
12953886 TTCTTCG-CTAGGGCACCATCGTCGGAA-CATCACCGAAGAACCTGACCAGCTGCATTGAGGATC
451 TTCTTCGTC-GGGGCACCATCG-CCGAAGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTC
** * * *
12953949 CGGTGATCGGGGGGCCAAGGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCT
514 CGACGATCGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
12954014 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
579 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
**
12954079 TTTACAGGTTTGCTGCCAGTAGCCATTAATCTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
644 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
12954144 CAAAATCTTGTACACTTCTAGTTTCTAGCTGAATTTTTTTAAGCATGCCAAAAAAAATACAAGGA
709 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGA
* * * ** *
12954209 TCACATCAACCAAGTTTGGCGCCAAAACTCCTTCTAAAAAAATTTTAAAGAAT-TCTGAACCGCT
774 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTGAACCG-T
*
12954273 -AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCA
838 AAAAAGTTTCAAAAATC-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
**
12954329 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
1 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* *
12954394 TATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT
66 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
12954459 GGCTGGCATAGTACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCTTTCC
131 GTC-GGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* *
12954524 CAATATAAGATCGGACCGGACCGAGGGTT
195 CAGTATAAGATCGGACCAGACCGAGGGTT
12954553 ACGGCAGCAC
Statistics
Matches: 4541, Mismatches: 706, Indels: 507
0.79 0.12 0.09
Matches are distributed among these distances:
847 11 0.00
848 6 0.00
849 7 0.00
850 6 0.00
851 9 0.00
852 7 0.00
853 7 0.00
854 5 0.00
855 3 0.00
857 92 0.02
858 167 0.04
859 483 0.11
860 1022 0.23
861 69 0.02
862 26 0.01
863 10 0.00
864 8 0.00
865 4 0.00
866 11 0.00
867 9 0.00
868 65 0.01
869 7 0.00
870 61 0.01
871 22 0.00
872 8 0.00
873 9 0.00
874 6 0.00
875 8 0.00
876 2 0.00
877 4 0.00
878 4 0.00
879 7 0.00
880 3 0.00
881 10 0.00
882 9 0.00
883 3 0.00
885 4 0.00
886 113 0.02
887 3 0.00
889 1 0.00
890 1 0.00
891 10 0.00
892 21 0.00
893 1 0.00
894 7 0.00
895 12 0.00
896 1192 0.26
897 85 0.02
898 7 0.00
899 9 0.00
900 151 0.03
901 28 0.01
902 25 0.01
903 25 0.01
904 606 0.13
905 32 0.01
906 6 0.00
907 12 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCC
AGTATAAGATCGGACCAGACCGAGGGTTGTGGGAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
GCCGACCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATC
GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCGCCGAAGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
CGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTGAACCGTAAAAAGTT
TCAAAAATCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
Found at i:12955412 original size:26 final size:26
Alignment explanation
Indices: 12955376--12955428 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12955366 GTTGACTTTG
* *
12955376 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGCCTAA
*
12955402 GCATACGGAGTTCATTCCAAGCCTAA
1 GCATACAGAGTTCATTCCAAGCCTAA
12955428 G
1 G
12955429 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGCCTAA
Found at i:12956324 original size:26 final size:26
Alignment explanation
Indices: 12956288--12956340 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12956278 GTTGACATAG
12956288 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12956314 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12956340 G
1 G
12956341 ATCAGAGCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12957216 original size:26 final size:26
Alignment explanation
Indices: 12957186--12957237 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12957176 GTTGACATAG
*
12957186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12957212 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12957238 TATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12957226 original size:898 final size:897
Alignment explanation
Indices: 12954506--12958859 Score: 5808
Period size: 899 Copynumber: 4.8 Consensus size: 897
12954496 ATTGGCTTAG
* * * * * *
12954506 GCATACGGAGTTCTTTCCCAATATAAGATCGGACCGGACCGAGGGTTACGGCAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12954571 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACTATCATTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAC-ATCGTCGGAGCATCACCGGAGA
* * * *
12954636 ACCTGACCGATGGCATTGGGGTTCCAACGATTGGGGGGCCGGGGGGGT-TG-GCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
12954699 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12954764 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12954828 GGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
12954893 CCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
12954958 TTTTAAACAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTA
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
12955023 CCATGAAACTTCACGTGAAAGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCTT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
12955088 TGGCACACAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCAACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12955153 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
12955218 CATACGGAGCTCATTCCCAGTCTAAGATCAAACCGAGCTGAGGTTTACGGTAGCAAGATCGGCAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGAT-GGCAG
* * * * * * *
12955283 CATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACGACCGAGTGCC
779 CACGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
12955348 CGCACGCTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATTCCCAGTCTAA
844 CGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12955402 GCATACGGAGTTCATTCCAAGCCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12955467 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA-CATCGTCGGAGCATCACCGGAGA
* * * *
12955532 ACCTAACCGGCGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
*
12955596 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTACAAACCTCGAGAACTCCA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGAACT-CA
12955661 CACCCCCTTTAAAGAGCATTTGGAGATTTTACAAGGTTTGGCTGCCAGTAGCCA-TAAAGTGTCT
258 CACCCCC-TTAAAGAGCATTT-GAGATTTTAC-AGGTTT-GCTGCCAGTAGCCATTAAAGTGTCT
* * * *
12955725 GAAATTGGCGTCTACCTTTTTCGAATGCGTCAC-AAATCTTGTACACTTCGAGTTTTTAGC-GAT
319 GAAA-TGGGGAC-ACTTTTTTCAAATG-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-
* * *
12955788 GATTTTTTTTTGCATGCC-AAAAAAATACAAGGATCAGCGTG-TACCAAATTTTAGGGCCAAAAA
380 -ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-CG-GCTACC-AAGTTTGGGGCC-AAAA
* *
12955851 CTCCTTCCG-AAAAA-TTT-AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
440 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
*
12955913 AAACGAGTCGTCTTGACATGAAAACTTCACGTGAAGGCTTAAAGGGACCATTGTATTGAATTTAC
505 AAACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTT-AAGGGACCATTGTA-TGAATTTAC
* *
12955978 AAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTA
567 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** * * * *
12956043 TCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGTCGGCATAGTGCCTGGCCGCCTGCTCGCTCGC
632 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTG-C---CCGCCCGCCCGCCCGC
* * * * * * *
12956108 TCATTTTGTCGGTTGGCTTTGGTATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGG
693 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGG
* * * * *
12956173 GTTGCAGCAGCAGGATCGACAGCACGCAGAAGGGGACCCGATCGATCCTCGGCTTGCTCATCTCG
758 GTTGCGGCAGCAGGAT-GGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* *
12956238 CCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGATTT-GTCGGTTGACATAGGCATACGGAGTTCA
822 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACATAGGCATACGGAGTTCA
12956302 TTCCCAGTCTAA
886 TTCCCAGTCTAA
* * * * *
12956314 GCATATGGAGTTCATTCCCAGTCTAAGATCAGAGCGGACCGAGGGTTGTGGCAGGACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * **
12956379 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACATCGCCAGAGAATCGTCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACATCGTCGGAGCATCACCGGAGAA
* * * *
12956444 CCTGACCGACAGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTTCGCACATGATGTGT
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGC
* *
12956509 GATGGGTACT-GTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12956573 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
12956638 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12956703 GCATGCCAAAAAAAATACAAGGATCACGGCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAT
390 GCATGCCAAAAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
12956768 TTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
12956833 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
12956898 TAGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
12956963 ATCCCGTCTCTCTGACGGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGGTTAGG
650 ATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * **
12957028 CATACGGAGTTCATTCCCAATTTAAGATTGAACTGAACTGAGGGTTGTGGCAATAGGATGGACAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATGG-CAG
* * * * * * *
12957093 CACACAGAAGGGGACCCGATCTATCCCCGGCCTGCGCATCCTGCCTCTCTGGTCGGCTGAGCACC
779 CACGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
12957158 CGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
844 CGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12957212 GCATATGAAGTTCATTCCCAGTCTAATATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12957277 CTCGGGCATGTGCTGTTGCCCCATTTTTCTTCACCGGGGCACCACCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA-CATCGTCGGAGCATCACCGGAGA
* * * *
12957342 ACCTGACCAACGGCATTGGGGTTTCGACGATCAGGGGGGGCCAGGGTGGGTGTGCGCACATGATA
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGG-C-GGGGGGGTGTGCGCACATGATG
*
12957407 TGTGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATGC-AACCTCGAGAACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGAACT
*
12957470 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12957535 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
12957600 TTATGCATGCCAACAAAAATACAAGGATCA----T--GAAGTTTGGGGCCAAAACTCTTTCC-AA
386 TTGTGCATGCCAAAAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
12957658 AAAATTTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
12957723 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
12957788 GACGTTGGCATGCAGAAATATGAAGTTGTGCCTAAACACACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
12957853 TGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCTGCTCGTTTCATCGGT
645 TGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCG--C-C-CGCCCGCCCGCTCGTTTCGTCGGT
* * * *
12957918 TGGCTTAAGCATACGGAGTTAATTCCCAGTCTAAGATC-ATACC-AGACTGAGGGTTGTGGCAGT
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACTGAGGGTTGCGGCAGC
* * * * * *
12957981 AGGCTTGGCAGTATGCA-AGGTGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGC
769 AGG-ATGGCAGCACGCAGAAG-GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
12958045 CTGCTGAGCGCCCGCAAGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTA
832 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTA
*
12958110 G
897 A
* * * *
12958111 GCATACGGAGTTCATTCCCAGTCTAAGCTC-GAACCAGATC-ACGGGTTGCGGTAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGA-GGGTTGCGGCAGCACATGCTG
* * * * *
12958174 GGCTTGGGCAAGTGCTGGTGCCTCATTTTTCGTCACCGAGGCAACATCGTCGGAGCATCACCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC-ACATCGTCGGAGCATCACCGGA
* **
12958239 GAACCTGTCCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGCGGGGGGGTGTGCGCACATG
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGG--GGCGGGGGGGTGTGCGCACATG
* *
12958304 ATG-GGGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
189 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
12958368 CTCACACCCCCTTAAAGAGCTTTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT-T
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
12958432 GGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAATT
319 -GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
12958497 TTTTTGTGCGTGGCAAAAAAAATAAAAGGATCACGTCCACCAAGTTTGGGGCCAAAACACCTTCC
383 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** * *
12958562 GAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGAGT
448 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* **
12958627 CGTCTTGCGATTCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** *
12958692 ACCGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
12958757 CTTGCGCATCCCGTCTCTCTGACCGGTGTAGT----GCCCGCCCTCCTGTTCATTAT-ATCGATT
643 CTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT-TCGTCGGTT
* * *
12958817 GCCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCGGACCG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCG
12958860 GACCGATGGT
Statistics
Matches: 3053, Mismatches: 333, Indels: 141
0.87 0.09 0.04
Matches are distributed among these distances:
894 5 0.00
895 242 0.08
896 139 0.05
897 65 0.02
898 358 0.12
899 383 0.13
900 228 0.07
901 239 0.08
902 142 0.05
903 49 0.02
904 68 0.02
905 229 0.08
906 289 0.09
907 53 0.02
908 131 0.04
909 14 0.00
910 9 0.00
911 61 0.02
912 314 0.10
913 35 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACATCGTCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATGGCAGCA
CGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12958117 original size:26 final size:26
Alignment explanation
Indices: 12958081--12958132 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
12958071 GTGGGTTGAC
12958081 TTAGGCATACGGAGTTCATTCCCAGT
1 TTAGGCATACGGAGTTCATTCCCAGT
12958107 TTAGGCATACGGAGTTCATTCCCAGT
1 TTAGGCATACGGAGTTCATTCCCAGT
12958133 CTAAGCTCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGGCATACGGAGTTCATTCCCAGT
Found at i:12959952 original size:719 final size:709
Alignment explanation
Indices: 12958107--12963148 Score: 6357
Period size: 707 Copynumber: 7.1 Consensus size: 709
12958097 CATTCCCAGT
* * *
12958107 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCTCGAACCAGATCACGGGTTGCGGTAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGATCAAGGGTTGCGGCAGCACATGC
* * * * ** *
12958172 TGGGCTTGGGCAAGTGCTGGTGCCTCATTTTTCGTCACCGAGGCAACATCGTCGGAGCATCACCG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG-GGCGCCATCGTC--AGCATCGCCG
* * **
12958237 GAGAACCTGTCCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGCGGGGGGGTGTGCGCACA
127 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C--CGGGGGGGTGTGCGCACA
* *
12958302 TGATG-GGGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
189 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAG
* * *
12958366 AACTCACACCCCCTTAAAGAGCTTTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT
253 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
12958431 -TGGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAA
318 CT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * *
12958495 TTTTTTTGTGCGTGGCAAAAAAAATAAAAGGATCACGTCCACCAAGTTTGGGGCCAAAACACCTT
382 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
12958560 CCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGA
447 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGA
* **
12958625 GTCGTCTTGCGATTCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
512 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-A
** *
12958690 AAACCGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
576 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
12958755 GGCTTGCGCATCCCGTCTCTCTGACCGGTGTAGTG---CCCGCCC-TCCTGTTCATTAT-ATCGA
641 GGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCCCCGCCCGCCCCGCTCGTT-TCGTCGG
*
12958815 TTGCC
705 TTGGC
* * * * * *
12958820 TTAGGCATACGGAGTTGATTCCCAGTCTAAGATCGGACCGGACCGATGGTTGCTGCAAG-ACATG
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGATCAAGGGTTGCGGC-AGCACATG
* * * * * * * *
12958884 CTGGGCTTGAGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCACC
64 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGCGCCATCGTC--AGCATCGCC
* *
12958949 GGAGAACCTGACCGGCGGCATTGGGGTTCTGTCGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
* * * ** *
12959014 ATGTGTGATGGGAGCTAGTAGGTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
* *
12959079 CTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* ** * *
12959144 GAAATGGGGACACTTTATTCAAATGCACGCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
12959209 TTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * * *
12959274 AAAAAATTTTAAAAAATCCCAAACCGTAAAAACTTTTGAAAATCGTGAAAAATAAAAAATGAGTC
450 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTC
* * *
12959339 GTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCGTTCTATGAATTTACAAGCCATAAATA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA-A
* * *
12959404 TGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACGTACCACCCTATC-ATCCACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
12959468 TTGCGCATCCCGTATCTCTGGCCGGCGTAGTGCCCACCCGCCCGTTCGGCCGCTCGTTTCGTCGA
644 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCC-CCCGCCCG--C-CCCGCTCGTTTCGTCGG
* *
12959533 TGGGA
705 TTGGC
**
12959538 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGTAGCAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGATCAAGGGTTGCGGCAGCACATGC
* *
12959603 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGACGCCATCGTCGGAGCATCGCCG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG-CGCCATCGTC--AGCATCGCCG
* ** * *
12959668 GAGAACCTGACCGGTGGCATTGGGGTTCTAACGATCGGGGGGGCCGAGGGGGGTTTGCACACATG
127 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATG
* * *
12959733 ATGTGCAATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATTCCTCATCAAACCTCGAGAA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAA
* * * *
12959798 CTCACACCCCTTTAAAGAGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
12959863 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
12959928 TTTTTTGCATGCCAACCAAAATACAAGGATCATGTCTACAAAGTTTGGGCCCAAAACTCTTTCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
12959993 AAAAAATTTTAAAAAATCCCGAA-CTTCAAAAAGCTTCGAAAATCATGAAAATTAGAAAACGAGT
450 AAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
12960057 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAA
* * * * * *
12960122 ATGACAATGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCATGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * ** *
12960187 CTTGCACATCCTGTATCTCTGGCAGGTGTAGTGCCTGGCCGCCCGCCCACGCGCTCAG-TTCGTT
643 CTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCC-CCCCGCCCG-CC-C-CGCTC-GTTTCGTC
12960251 GGTTGGC
703 GGTTGGC
* * *
12960258 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAA-GGTTGCGGTAGCACATG
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGA-TCAAGGGTTGCGGCAGCACATG
* * * * *
12960322 CTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGAG-G-CA-C-T----ATCGCCAGA
64 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCGCCATCGTCAGCATCGCCGGA
* * *
12960379 GAACCTGACCGGTGGCATTGGGTTTCCGACGATCGGGGGGGCC-GGGGGGTGTGGGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
12960443 TGCGATGGGTGTTGGAACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAAAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTC
*
12960508 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
12960573 ATTGGGACACTTTTTTCAAAAGGTCATAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
12960638 TGTGCATACCAACAAAATTGCAAGGATCACGTCTACCAGGTTTGGGGCTAAAACTCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
12960703 AAATTTTACAAAATCCTGAACCACAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
12960768 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGG
* * * *
12960833 CATTGGCATGCAGTAATATGGAGATGTGCCTAAACCCACCTACCACCCTATTGTTCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12960898 CGTATCCCGTCTCCCTGGCCGGGGTAGTGCCCGCTCGCCTGCCTGCCCGCTTGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCC-CCCGCCCG-C--CCCGCTCGTTTCGTCGGTTG
12960963 GC
708 GC
* ** * * *
12960965 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGCAACACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGATCAAGGGTTGCGGCAGCACATGC
* **
12961030 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-CCTGGG-G-CA----C--CATCTTCGGA
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGCGCCATCGTCAGCATCGCCGGA
* *
12961086 GAACCTGACCGGCGGCATTGCGGTTCCGACGAACGGGGGGGCC-GGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
12961150 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
12961215 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12961280 ATGGGGACACTTTTTTCAAATGGTCATAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * **
12961345 TGTGCATGCCAACAAAAATGCAAGGAACACGTCTACCAGGTTTGGGGCTAAAACTCAATCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * ** * * *
12961410 AAATTTGACAAAATCCTGAACCACAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGATTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
12961475 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGG
** * * * *
12961540 CATTGGCACACAGTAATATGGAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCATG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12961605 CGTATCCCGTCTCCCTGGTCGGGGTAGTGCCCGCCCGCCCGTCTTCCCGCTCGTTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCC-CCCGCCCG-C--CCCGCTCGTTTCGTCGGTTG
*
12961670 GG
708 GC
* * *
12961672 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCAAGGGTTGCGGCAGCACACGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCA-GATCAAGGGTTGCGGCAGCACATGC
* * * *
12961737 TGGGCTTGGGCATGTGCTGGTGCTGTATTTTTCTTCACCGGG-G-CA----C--CATCGTCGGAG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCGCCATCGTCAGCATCGCCGGAG
* * * * * * *
12961794 AACCTGACCGGCGGCATTGCGGTTCCGATGAACGGGGGGGTC-GAGGGGTATGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
12961858 GCGATGGGTGCTGGTACTT-GCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAAAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12961922 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12961987 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTG-ATTTGTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTT
** * * * * * * *
12962051 TGTAAATACTAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGCGCCAAAAATCTTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
12962116 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGTGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
12962181 TTGCCAAGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCACGAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAATGG
** * * *
12962246 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATTGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
12962311 CGCATAACGTCTCTCTGACCGGTGTAGTGCCTGCCCCGCCCG-CCCGCTCGTTTCGTCGGCTGGC
647 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCC--CCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGC
* * * * *
12962375 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGATCAAGGGTTGCGGCAGCACATGC
* * * * *
12962440 TGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATTGCCG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGCGCCATCGTC--AGCATCGCCG
* ** * *
12962505 GAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCAAGGGGGTCGAGGGGGTGTGCGCACATGA
127 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * *
12962570 TGTGCGATGGGTACTGGTTCTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAAC
* *
12962635 TCACA-CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
12962699 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGATTTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
** * *
12962764 TTTGTGCATGCCAACAAAAATACAAGGATCTTGTCTACCAATTTTGGTGCCAAAACTCC-T--GA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*** ** * *
12962826 AAAAATTTTAAAAAATTTTGAACCCCAAAAAGTTTTG-AAATCCGTGAAAAATAGAAAACGAGTC
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAAT-CATGAAAAATAGAAAACGAGTC
12962890 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
* * *
12962955 TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCTACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *** * *
12963020 TTGCGCATCCCGTCTCCCTGGCCGACATAGTACCCGTCGCCCGCCCG-CCCACTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGT-GCC--C-CCCGCCCGCCCCGCTCGTTTCGTCGG
12963084 TTGGC
705 TTGGC
* * * * *
12963089 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAATGGATGCGGCAGCA
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGATCAAGGGTTGCGGCAGCA
12963149 GGATCAATAG
Statistics
Matches: 3820, Mismatches: 443, Indels: 131
0.87 0.10 0.03
Matches are distributed among these distances:
703 107 0.03
704 7 0.00
705 4 0.00
706 420 0.11
707 1303 0.34
708 9 0.00
709 49 0.01
710 64 0.02
711 401 0.10
712 195 0.05
713 143 0.04
714 139 0.04
715 203 0.05
716 42 0.01
717 8 0.00
718 166 0.04
719 402 0.11
720 154 0.04
721 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (709 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGATCAAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCGCCATCGTCAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGTGTAGTGCCCCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGC
Found at i:12963280 original size:26 final size:26
Alignment explanation
Indices: 12963251--12963303 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12963241 GTTGACCATG
12963251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
** *
12963277 GCATACTTAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12963303 G
1 G
12963304 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12965350 original size:902 final size:900
Alignment explanation
Indices: 12962387--12965846 Score: 4583
Period size: 902 Copynumber: 3.8 Consensus size: 900
12962377 AGGCATACAG
* *
12962387 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCA
** * * * * *
12962452 TGTGCTGGTACCGCATTTTTCTTCGTC-AGGGCACCATCGTCGAAGCATTGCCGGAGAACCTGAC
66 TGTGCTGGTGTCGTATTTTTCTTCGCCGA-GGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* **
12962516 CGGCGGCATTGGGGTTCCAACGATCAAGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGG
130 CGGCGGCATTGGGGTTCCGACGAT-TGGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12962581 TACTGGTTCTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACTCACA-CCCCT
194 TACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
12962645 TAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
*
12962710 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGATTTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTGTGCATGC
** * * *
12962775 CAACAAAAATACAAGGATCTTGTCTACCAATTTTGGTGCCAAA-A-CTCCTGAAAAAATTTTAAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACACCTTCTGAAAAAATTTTAAA
*** * ** *
12962838 AAATTTTGAACC-CCAAAAAGTTT-TGAAATCCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
453 AAATCCCGAACCTGCAAAAAGTTTCAAAAAT-CGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
12962901 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
12962966 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCTACGGCTTGCGCATCCC
582 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* *
12963031 GTCTCCCTGGCCGACATAGTACCCGTCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
647 GTCTCCCTGGCCGACATAGTGCCCCTCGCCCGCCCG-CCACTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
12963096 TATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAATGGATGCGGCAGCAGGATCAATAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAGGATCAGTAGCA
* ** * * *
12963161 CACAAAGGGGGACCCGACCGATCCTTGACTTACGTATCCCACCCCTC-GACCGGCTGAGCGCCCG
776 CACAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
12963225 CATGCTTGTTTCGTGGGTTGAC-CATGGCATACGGAGTTCATTCCCAGTCTAAGCATACTT
841 CACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGCATACTT
* * * *
12963285 AGTTCATTCCCCGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCA
* * * ** *
12963350 TGTGCTGGTGTCATATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACT
66 TGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * *
12963415 GGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAAGGGGGTGTGCGCACATGATGTGCAATGGG
131 GGCGGCATTGGGGTTCCGACGAT-TGGGGGGTCG-AGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
12963480 TGCAGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
12963545 TAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * * * *
12963610 CTTTTTTCAAATGGTCACAAAATCTGGTATACTTCTAGTTTTTAGCTGAATTATTTTGTGCGTGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGC
* * * *
12963675 CAAGAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAC-TCTTTTCGAAAAAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACACCTTCT-GAAAAAATTTTAA
* * ** * *
12963739 AAAATCTCGAA-CTGCAAAAGGTTTTGAAAATTGTGAAAATTAAAAAACGAGTCGTCTTGCCATG
452 AAAATCCCGAACCTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
* * ** *
12963803 AAACGTCATGTGAAGGCTTAAGGGACCATTGTCGGAATTTACAAGCCATAAAAATGGCACTGGCA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
12963868 TGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
582 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* *
12963933 GTCTCCCTGGCCGACGTAGTG--CC-CACCCGCCCGTCCACTCGTTTCGTCGGTTGGCTTAGGCA
647 GTCTCCCTGGCCGACATAGTGCCCCTCGCCCGCCCG-CCACTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
12963995 TACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCAAGGGTTACGGTAGCAGGATCGGTAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAGGATCAGTAGCA
* ** * * * *
12964060 TACAGAGGGGGACCCGGTCGATCCCC-ACCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCTCTC
776 CACAGAGGGGGACCCGACCGATCCCCGA-CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* ** * * * **
12964124 GTACGCTCGTTTTATTGGTTGACTTAGGCTTGCGGAGTTCATTCCCAGTCTAAGCATACGG
840 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTT
** * * ** *
12964185 AGTTCATTCCCAGTCTAAGATTTGAGCAGACCGAGGGTTACGATAGCACATGCTGGGCTCA-AGC
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT-AGGGC
* * *
12964249 ATGTGCTGGTG-C-TACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAACGTCGGAGAACCTG
65 ATGTGCTGGTGTCGT--ATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
* * * *
12964312 ACCGGTGGCATTAGGGCTCCGACGATTGGGGGGTCG-GGGGGTGTGCACACATGATGTGCGATGG
128 ACCGGCGGCATTGGGGTTCCGACGATTGGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGG
* * * **
12964376 GTGCTGGTAATTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
193 GTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * * * * **
12964441 TTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAATAGCCATTAAAATATCTGGAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* * * *
12964506 ACTTTTTTCAAATAGTCACAAAATCTTGTACAGTTCGAGATTTTAGCTGATTTGTTTTGTGCATA
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTT-TTTTGTGCATG
*
12964571 CCAA-AAACAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACACCTTCTGAAAAAATTTT
387 CCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACACCTTCTGAAAAAATTTT
* * *
12964635 AAAAAATCCCGAACCT-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCTTCTTGCCA
450 AAAAAATCCCGAACCTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCA
* * *
12964699 TGAAACTTAACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
12964764 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
580 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
* **
12964829 CCGTCTCTCTGGCCGGTATAGTGCCCCTCGCCCGCCCGCGCACTCGTTTCGTCGGTTGGCTTAGG
645 CCGTCTCCCTGGCCGACATAGTGCCCCTCGCCCGCCCGC-CACTCGTTTCGTCGGTTGGCTTAGG
* *** *
12964894 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACGGCAGCAGGATCAGCAG
709 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAGGATCAGTAG
**
12964959 CACGTAGAGGGGGAACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
774 CACACAGAGGGGG-ACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
12965024 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACTT
838 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTT
* * * *
12965087 AGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCAGTAGCACATGCTGGGCTAGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCA
*
12965152 TGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCACCATCG-CTGGAGCATCGTCAGAGAACCTGAC
66 TGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGAC
* * * * *
12965216 CAGCGGCATT-GGGTTCCGGCGATTGGGGGGTCAGAGGGGGTCTGTGCACATGTTGTGCGATGGG
130 CGGCGGCATTGGGGTTCCGACGATTGGGGGGTC-GAGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12965280 TACTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACA-CCCCT
194 TACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * *
12965344 TAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATAGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* *
12965409 CTTTTTTCAAATGGTCACAAAATCATGTACACTTCAAGTTTTTAGCTGATTCTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT-TTTTTGTGCATGC
** * * * *
12965474 CAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGCGCCAACACTCCTTTTGAAAAAGTTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-ACACCTTCTGAAAAAATTTTAA
* * * * * * *
12965539 AAAAT-CCTAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTTTTGCCATA
452 AAAATCCCGAACCTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
* * *
12965603 AAACTTCACGTGAAGGCTTAAGGGACTATTATATGAATTTACAAGCCATAAAAATGGTATTGGCA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * * *
12965668 CACAGAAATATGAAGATGTGCCAAAACCCACCTGCCACCCTATCGATCCACGACTTGCGCATCCT
582 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * * * *
12965733 GTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGTCCGCCCATCCACCCGCTCGTTTCATCGGTTG
647 GTCTCCCTGGCCGACATAGTG--C-CCC-T-CGCCCGCCC-GCCA----CTCGTTTCGTCGGTTG
* *
12965798 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAG
12965847 AGTTGTGGCA
Statistics
Matches: 2228, Mismatches: 288, Indels: 79
0.86 0.11 0.03
Matches are distributed among these distances:
896 6 0.00
897 231 0.10
898 350 0.16
899 224 0.10
900 352 0.16
901 135 0.06
902 768 0.34
903 87 0.04
904 2 0.00
905 3 0.00
906 1 0.00
907 10 0.00
908 1 0.00
911 58 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (900 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCA
TGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATTGGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTA
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACACCTTCTGAAAAAATTTTAAAAAA
TCCCGAACCTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
CCCTGGCCGACATAGTGCCCCTCGCCCGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAGGATCAGTAGCACACAG
AGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTT
Found at i:12966828 original size:714 final size:713
Alignment explanation
Indices: 12965087--12967285 Score: 2862
Period size: 714 Copynumber: 3.1 Consensus size: 713
12965077 AAGCATACTT
* * * * * * *
12965087 AGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCAGTAGCACATGCTGGGCTAGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* * * * *
12965152 TGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCACCATCG-CTGGAGCATCGTCAGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGAC
* * * * * * *
12965216 CAGCGGCATTGGGTTCCGGCGATTGGGGGGTCAGAGGGGGTCTGTGCACATGTTGTGCGATGGGT
130 CGGCGGCATTGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
12965281 ACTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACA-CCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* * * *
12965345 AAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATAGGGACAC
260 AAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACAC
* * *
12965410 TTTTTTCAAATGGTCACAAAATCATGTACACTTCAAGTTTTTAGCTGATTCTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCC
* * * * * *
12965475 AACAAAAATACAAGGATCGTGTCTACCAAGTTTGGCGCCAACACTCCTTTTGAAAAAGTTTTAAA
389 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
* * * * * *
12965540 AAATCCTAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTTTTGCCATAAA
454 AAATCCTGAAC-CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
12965605 ACTTCACGTGAAGGCTTAAGGGACTATTATATGAATTTACAAGCCATAAAAATGGTATTGGCACA
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACA
* * * *
12965670 CAGAAATATGAAGATGTGCCAAAACCCACCTGCCACCCTATCGATCCACGACTTGCGCATCCTGT
583 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-GT
*
12965735 CTCTCTGGCCGACGTAGTGCCCGCCCGTCCGTCCGCCCATCCACCCGCTCGTTTCATCGGTTGGC
647 CTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCG--CAT----CCGCTCGTTTCGTCGGTTGGC
12965800 TTAGGCATACGG
702 TTAGGCATACGG
* * * *
12965812 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTGTGGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* * *
12965877 TGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * *
12965942 GGCGGCATTAGGGTTCAGGTGATTGGGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGGTGGGT
131 GGCGGCATT-GGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
12966007 GCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* * * *
12966072 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTTTGAAATTGGGACAC
260 AAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACAC
* * *
12966137 TTTTTTTAAATGGTCACAAAATCTTGTACAGTTCGATTTTTTAGCTGAATTGTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCC
* ** *
12966202 AACAAAAATACAAGGATCATGTCTTCCAAGTTTGGGGAGAAAAATCCTTCCGAAAAAATTTTAAA
389 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
*
12966267 AAATCCTGAACCTCAAAAAGTGTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
454 AAATCCTGAACCT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
12966332 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GTATTTGGCAC
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA-TTGGCAC
* * * * * *
12966396 ACAAAAATATGAAGATGTCCCTAAACCCA-CTACCACTCTATCTATCCACGGCTCGTGCATCACA
582 ACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC-CG
* * * * * *
12966460 TCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGC-T-CGCTCATTTTGTCGGTTGGCTTCGGCATG
646 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
12966523 CGG
711 CGG
** ** * * *
12966526 AGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGGCAGCAGATCCTAGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* * * *
12966591 TGTGCTGGTGCCACATTTTTCTTCATCGTGGCACCATCGTCGGAGCATCGCCGGAGAACCTGGCC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * *
12966656 GGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGT
131 GGCGGCATT-GGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
** **
12966721 GCTGGTACTTGGCCCTTATATCAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* * *
12966786 AAAGAGAATTCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
260 AAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACAC
* * *
12966851 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTCTCTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TGTGCATGCC
* * ** **
12966916 AACAAACATACAGGGATCACATCTACCAAGAGTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
389 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
* * ** ** * *
12966981 AAATCCCGAACCGTAAAAGGTTTTGAAAATTGTGAAAAATAGAAAACGGGTCGTCTTACCATGAA
454 AAATCCTGAACC-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * * **
12967046 AGTTAACGTGAAGGCTTAAGGGACCACTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACA
*
12967111 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
583 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGT
* * ** * *
12967176 CTCTCTGGCCGGCATAGCACCCGCCCGCCCGCTTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAT
647 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCAT--CCGCTCGTTTCGTCGGTTGGCTTAGGCAT
*
12967241 ACAG
710 ACGG
* * * *
12967245 AGTTCATTTCCAGTCTAAGATTAGACCGGACTGAGGGTTGC
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
12967286 ATTAGTATGA
Statistics
Matches: 1286, Mismatches: 172, Indels: 38
0.86 0.11 0.03
Matches are distributed among these distances:
713 3 0.00
714 562 0.44
715 57 0.04
716 2 0.00
719 64 0.05
720 1 0.00
722 3 0.00
724 1 0.00
725 119 0.09
726 157 0.12
727 317 0.25
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (713 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
GGCGGCATTGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAA
CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAA
ATCCTGAACCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAA
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
Found at i:12968347 original size:26 final size:26
Alignment explanation
Indices: 12968311--12968363 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12968301 GTTGACTTAG
* *
12968311 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
12968337 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12968363 G
1 G
12968364 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12968488 original size:915 final size:901
Alignment explanation
Indices: 12966518--12969078 Score: 3410
Period size: 915 Copynumber: 2.8 Consensus size: 901
12966508 GTTGGCTTCG
* * * * * *
12966518 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGGCAGCAGATCCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATACTAGG
* *
12966583 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGTGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
12966648 ACCTGGCCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
131 ACCTGACCGACGA-ATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
** *
12966713 CGATGGGTGCTGGTACTTGGCCCTTATATCAGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** *
12966778 ACCCCCTTAAAGAGAATTCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAAT
* *
12966843 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTCTC
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TC
* * * * *
12966908 TGCATGCCAACAAACATACAGGGATCACATCTACCAAGAGTGGGGCCAAAAATCC-TTCTGAAAA
387 TGCATGCCAAGAAAAATACAAGGATCACATCTACCAAGATTGGGGCCAAAACTCCTTTC-GAAAA
* * * * * *
12966972 AATTTTAAAAAATCCCGAACCGTAAAAGGTTTTGAAAATTGTGAAAAATAGAAAACGGGTCGTCT
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAAAGAAAACGAGTCATCT
* * * *
12967037 TACCATGAAAGTTAACGTGAAGGCTTAAGGGACCACTGTATGCATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGC
* *
12967102 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12967167 GCATCCCGTCTCTCTGGCCGGCATAG-CAC-CCGCCCGCCCGCTTGCCCGCTTGTTTCGTCGGTT
646 GCAT-CCGTCTCTCTGGCCGACGTAGTCCCGCCGCCCGCCCGCCTGCCCGCTTGTTTCATCGGTT
* * ** ** * *
12967230 GGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATTAGACCGGACTGAGGGTTGCATTAGTATG
710 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCAAGGGTTGCAGCAGCAGG
* ** * * *
12967295 ATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTATAATCGGT
775 ATCGACAGCACACAAAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTATAACCGGC
* * * *
12967360 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCCAGTGTAA
840 TGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * * * ** *
12967422 GCATACCAAGTTTATTCCCAGCCTAAGATCGGATCAAATCGAGGGTTGCGACAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATACTAGG
* * * **
12967487 CTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * **
12967552 ACCTGACCGACAGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGTGGTGTGCGCAGTTGATGTG
131 ACCTGACCGAC-GAATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTG
* * *
12967617 CGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATTCCTCATCAAATCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12967682 ACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAAT
* * *
12967747 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTGT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCT
* *
12967812 GCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTTCGAAAAAA
388 GCATGCCAAGAAAAATACAAGGATCACATCTACCAAGATTGGGGCCAAAACTCCTTTCGAAAAAA
*
12967877 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAAAGAAAACGAGTCATCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAAAGAAAACGAGTCATCTTG
**
12967942 CCATGAAACTTCGTGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCAT
* *
12968007 TGGCATGCAGAAATATGAAGATGCGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
12968072 ATCTCGTCTCTCTGGTCGACGTAGTTCCCGCCTGCCCGCCCACCCGCCCT-CCCGCTCGCTCGTT
648 ATC-CGTCTCTCTGGCCGACGTAG-TCCCGCC-GCCCG----CCCG-CCTGCCCGCT---T-GTT
* * *
12968136 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCAAGGGTTGT
701 TCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCAAGGGTTGC
* * * * *
12968201 GGCAGCAGGATTGGCAGCACTCAAAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCTT
766 AGCAGCAGGATCGACAGCACACAAAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCT
* ** * ** *
12968266 CTGGCCGGCTGAGCGCCCTCACGCTCGTTCCATGGGTTGACTTAGGCATATGGAGTTTATTCCCA
831 ATAACCGGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
12968331 GTCTAA
896 GTCTAA
** * ** * * *
12968337 GCATACGGAGTTCATTTTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTGGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATACTAGG
* * *
12968402 CTCGGGCATGTGCTGGAGCCTCATTTTTCTTCACCGGGGCACCATCG-CAGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* *
12968466 AACCTGACCGACGGAATTGGGGTTCC-AGCGATCCGGAGGGCCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGAC-GAATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
12968530 GCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
12968595 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCCATTAAAGTGTCTGAAA
* *
12968660 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTT
* * * *
12968725 CTGCATGCC-AGCAAAAATAGAAGGATCACATCTACCAAGTTTGGGGCCAACACTCCTTTCAAAA
386 CTGCATGCCAAG-AAAAATACAAGGATCACATCTACCAAGATTGGGGCCAAAACTCCTTTCGAAA
* * *
12968789 AAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAA-AAAACGAGTCAT
450 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAA-AAGAAAACGAGTCAT
* * *
12968853 CTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATG
** * * *
12968918 GCATTGGCACACAGAAAGATGAAGATGTGCCTAAA-CCAGCCTGCCACCCTATCGATCCACGACT
579 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGGCT
* * *
12968982 TG-GCATCCAGTCTCTCTGGCCGACGTAGT------GCCCGCCCGTCC-ACCCGCTCGTTTCATT
643 TGCGCATCC-GTCTCTCTGGCCGACGTAGTCCCGCCGCCCGCCCG-CCTGCCCGCTTGTTTCATC
**
12969039 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
706 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
12969079 CGGACCAGAC
Statistics
Matches: 1453, Mismatches: 178, Indels: 58
0.86 0.11 0.03
Matches are distributed among these distances:
898 46 0.03
902 13 0.01
903 257 0.18
904 337 0.23
905 3 0.00
906 7 0.00
907 5 0.00
911 10 0.01
912 2 0.00
913 3 0.00
914 222 0.15
915 546 0.38
916 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATACTAGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCTGCA
TGCCAAGAAAAATACAAGGATCACATCTACCAAGATTGGGGCCAAAACTCCTTTCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAAAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CGTCTCTCTGGCCGACGTAGTCCCGCCGCCCGCCCGCCTGCCCGCTTGTTTCATCGGTTGGCTTA
GGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCAAGGGTTGCAGCAGCAGGATCGAC
AGCACACAAAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTATAACCGGCTGAGCG
CCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:12969724 original size:713 final size:710
Alignment explanation
Indices: 12968337--12970526 Score: 3099
Period size: 713 Copynumber: 3.1 Consensus size: 710
12968327 CCCAGTCTAA
** * * *
12968337 GCATACGGAGTTCATTTTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTGGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGCT-GCACATGCTAGG
* *
12968402 CTCGGGCATGTGCTGGAGCCTCATTTTTCTTCACCGGGGCACCATCGCAGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCAGGAGCATCGCCGGAGA
* *
12968467 ACCTGACCGACGGAATTGGGGTTCCA-GCGATCCGGAGGGCCGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTT-CAGGCGAT-CGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12968531 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12968596 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12968661 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTC
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTC
* * * * *
12968726 TGCATGCCAGCAAAAATAGAAGGATCACATCTACCAAGTTTGGGGCCAACACTCCTTTCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
12968791 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTT
453 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12968856 GCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12968921 TTGGCACACAGAAAGATGAAGATGTGCCTAAA-CCAGCCTGCCACCCTATCGATCCACGACTTGG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGGCTTGG
*
12968985 CAT-CCAGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCCGCTCGTTTCATTGGTTGGCTTA
647 CATCCCA-TCTCTCTGGCCGACGTAGTGCCCGCCCG-CCACCCGCTCGTTTCGTTGGTTGGCTTA
12969049 G
710 G
* * *
12969050 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTGCGACTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-CTGCACATGCTAGG
* *
12969115 CTCGGGCATGTGCTGGTGACACATTTTTC-TCTGCCGGGGCACCATCGTC-GGAGCATCGCCGGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGGCACCATCG-CAGGAGCATCGCCGGA
* * *
12969178 GAACCTGACCGACGGCATTAGGGTTCAGGTGATTGGGGGGCCGGGGGAGTGTGCGCACATGATGT
128 GAACCTGACCGACGGCATTGGGGTTCAGGCGATCGGGGGGCCGGGGG-GTGTGCGCACATGATGT
* * *
12969243 GCGGTGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12969308 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
12969373 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGATTTTTTCGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * ** * * **
12969438 GGGCATGCCAAAAAAAATACAAGGATCATGTCTTCTAAGTTTGGGGAGAAAACTCCTTCCGAAAA
387 CTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
12969503 AATTTTAAAAAATCCTGCACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12969568 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GT
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12969632 ATAGGGCACAAAGAAATATGAAGATATGCCTAAACCCA-CTACCACCCTATCTATCCACGGCTCG
582 AT-TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
12969696 TGCATCCCATCTCTC-GGCCTGGCGTAGTGCCCGCCCG---CCTGCTCGTTTCGTTGGTTGGCTT
646 -GCATCCCATCTCTCTGGCC-GACGTAGTGCCCGCCCGCCACCCGCTCGTTTCGTTGGTTGGCTT
12969757 AG
709 AG
* * * * *
12969759 GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGATCCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GCTGCACATGCTAGG
* * ** * * *
12969824 CTCAGGCATGTGCGGGTGCCGTATTTTTCTTCACCGGGGCACCATCCCTGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCAGGAGCATCGCCGGAGA
* * *
12969889 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCAGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
12969954 CGATGGGTGCTGGTACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
12970019 ACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12970084 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTC
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTC
* * * *
12970149 TGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTGCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
12970214 ATTTTAAAAAATCCTGAACCATAAAAAGTTT-GAAAAATTATGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCG-AAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
12970278 TGCCATGAAAGTTAACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
12970343 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-
* * * **
12970408 GCAGCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCAGCCTGCCCGCTCGTTTCGCCGGTTGG
646 GCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCA-----CCCGCTCGTTTCGTTGGTTGG
*
12970473 CATAG
706 CTTAG
* * **
12970478 GCATACGAAGTTCATTCCCAGTCTAAGATCTGACCGGATTGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
12970527 AGCAGTAAGA
Statistics
Matches: 1305, Mismatches: 145, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
708 1 0.00
709 159 0.12
710 407 0.31
711 58 0.04
712 49 0.04
713 557 0.43
714 8 0.01
719 66 0.05
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGCTGCACATGCTAGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCAGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCAGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGC
ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGCATC
CCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCACCCGCTCGTTTCGTTGGTTGGCTTAG
Found at i:12970673 original size:26 final size:26
Alignment explanation
Indices: 12970637--12970689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12970627 GTTGACTTAG
*
12970637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12970663 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12970689 G
1 G
12970690 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12971646 original size:159 final size:159
Alignment explanation
Indices: 12971374--12971723 Score: 398
Period size: 159 Copynumber: 2.2 Consensus size: 159
12971364 CGTCGATTGG
** ** * * * * *
12971374 CTTAGGCATATAGAGTTCATTCCTAGTCTAAGATTGGACCGGGCCAAGGGTAGCGGTAGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTAGCAGCAGCAGGAT
*
12971439 CGACAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTACGCATCCCACCCCTCTGGGCGGCTG
66 CGACAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTACGCATCCCACCCCTCTGGCCGGCTG
* *
12971504 GGCG-CACGCACGCTCGTTTCATGGGTTGA
131 AGCGTC-CGCACGCTCGTTTCATGGGTTAA
* * *
12971533 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTAGCAGCAGCAGGAT
* ** * * * * * * *
12971598 TGGTAGCATGCAAAGGGGGACCC-AGTCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGTT
66 CGACAGCACGCAAAGGGGGACCCGA-CCAATCCCCGACTTACGCATCCCACCCCTCTGGCCGGCT
* * *
12971662 GAGCGTCCGCATGCTTGTTTCGTGGGTTAA
130 GAGCGTCCGCACGCTCGTTTCATGGGTTAA
* *
12971692 CTTAGGCATACGGAGGTCATTCCTAGTTTAAG
1 CTTAGGCATACGGAGTTCATTCCTAGTCTAAG
12971724 CATATGGAGT
Statistics
Matches: 158, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
158 1 0.01
159 156 0.99
160 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTAGCAGCAGCAGGAT
CGACAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTACGCATCCCACCCCTCTGGCCGGCTG
AGCGTCCGCACGCTCGTTTCATGGGTTAA
Found at i:12971726 original size:26 final size:26
Alignment explanation
Indices: 12971697--12971749 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12971687 GTTAACTTAG
* *
12971697 GCATACGGAGGTCATTCCTAGTTTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
* *
12971723 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
12971749 G
1 G
12971750 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:12972634 original size:26 final size:26
Alignment explanation
Indices: 12972605--12972683 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
12972595 GTTAACTTAG
12972605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12972631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12972657 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12972683 G
1 G
12972684 ATCAGATCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12973561 original size:26 final size:26
Alignment explanation
Indices: 12973527--12973578 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12973517 TTGACTTTGC
*
12973527 CATACGGAGTTCATTCCAAGTTTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
* *
12973553 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
12973579 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAG
Found at i:12974920 original size:901 final size:900
Alignment explanation
Indices: 12972631--12979505 Score: 8848
Period size: 879 Copynumber: 7.7 Consensus size: 900
12972621 CCCAGTCTAA
* * *
12972631 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGATCAGAC
1 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * * *
12972696 CGAGGGTTACGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCATCGAGG
66 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
* * * * *
12972761 CACCATCGCCGGATCATCACCGGAGAACCTAACCGGCGGCATTGGGGTTCAGGCGATC-GGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* * *
12972825 CCGGGGG-GGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCT
196 CCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
12972889 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTGCAGGTTTGCT
261 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12972954 GCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACA
326 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
12973019 CTTCGAGTTTTTACCTGAATTTTTTTTTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAG
391 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * * * * *
12973084 CTTGGGGACAAAACTCCTTCTGGAAAAATTTTAAAAAATCCCAAACCGGAAAAAGTTTTAAAAAT
456 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAAT
*
12973149 CGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
521 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
12973214 ATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACGCACC
586 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
12973279 TACCACCTTATCGATCCACGGCTTGTGAATCCCGTCTCTTTGGCCGGCATAGT----GCCCGCCC
651 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCC
*
12973340 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
716 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * *
12973405 CTGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAGAAGGGGACCCGACCGATCCTCAGCTTGTGC
781 CTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGTGC
* *
12973470 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTTG
846 ATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * *
12973526 CCATACGGAGTTCATTCCAAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGT
1 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGA
* * * * ** * * *
12973590 CTGAGGGTTACGGCAGTACATGCTGGGCTCGGGAATGTGCTGCTATCATATTTTTCATCACCGGG
65 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGG
* ** * * *
12973655 GCACCATTGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG
130 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * *
12973720 GCCGACGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCC
195 GCCG--GGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
12973785 CCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
12973850 GCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* ** ** *
12973915 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCACACCAAAAAAAATATGAGGATCACATCTACC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
** ** * * *
12973980 GGGTTTGGCACCAAAACT-CTTTCGAAAAAAATTTTAAAAAATCTCAAACTGAAAAAAGTTTCAA
453 AAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAA
*
12974044 AAATCGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
517 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
12974109 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
*
12974174 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATGGTGCCCGCCC
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCC
* *
12974239 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGGAC
712 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * ** * * * *
12974304 CAGACTGAGGGTTGTGGCAGCAGCTTCGACAGCACATAGAGGGGGACTCGATCGATCCCCAGCTT
777 CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTT
* ** * * *
12974369 GCGCATCGCGCCCCTCAAGCCGACTGAGCGACCGCATGCTCGTTTCGTGGGTTGACTTAG
842 GTGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
12974429 GTATACGGAGTTAATTCCC-GATCTACGCATACGGAGTTCATTCCGAGGGTAAGATCGGATCAGA
1 GCATACGGAGTTAATTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA
*
12974493 CCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGG
65 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGG
* * * * * *
12974558 GCACCATCATCGGAGCATCGCCGAAGAACCTAACTGGCGGCATTGGGGTTCTGGCGTTCGGGGGG
130 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* ** *
12974623 GCCGGGGGTGGTGTGTGCACATGATGCACGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCC
195 GCCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
12974688 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
260 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12974753 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTAC
325 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
12974818 ACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
390 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
12974883 GTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCTCGAACCGTAAAACGTTTCAAAAA
455 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAA
** *
12974948 TAATGAAAAATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
520 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** * *
12975013 TATGAATTTACAAGAAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
585 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* * ***
12975078 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCAGGCCGACGTAGTGCCCGCCCGCC
650 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCC
* * *
12975143 CGCTCGCCTGTTTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTGTAAGAT
715 CG--C-CC-----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
12975208 CAGACCGGA-TCGAGGGTTGCGGCAGTAGGATCGACAGTGCAC--AGAGGAGGACCCGGCCGATC
772 CAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGACA--GCACGTAGAGGGGGACCCGACCGATC
* * * **
12975270 CTCAACTTGTGCATACCGCCCCTCTGGCCGGCTGAGCGCCCACATGCTCGTTTTATGGGTTGACT
834 CTCAGCTTGTGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
12975335 TAG
898 TAG
* * *
12975338 GCATACGGAATTCATTCCCAG--T---C-TA---AG---ATT----G-----GA-CCG---A-AC
1 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* ** * * *
12975377 CGAGGGTTACGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGTATTTTTATTCGTCAGGG
66 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
* *
12975442 CACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* *
12975507 CCAGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
196 CCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
12975572 ATCCCTCATCAAAGCTTGAGAACTCACACCCTCTTAAAGATCATTTGAGATTTTACAGGTTTGCT
261 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12975637 GCCAGTA-CCAATTAAAGTGTTTGAAATGGGGGA-ACTTTTTTAAAATGGTCACAAAATCTTGTA
326 GCCAGTAGCC-ATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * ** * *
12975700 CACTTCAAGTTTTTAGCTGAATTTTTTTTTGCACACCAAACAAAATACAAGGATCACATCTACCA
389 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* ** * ** * * * *
12975765 GGTTTGGCACCAAAACTCTTTCTAAAAAAATTTAAAAAAATCTCGAACCAAAAAAATTTTGAAAA
454 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAA
* * * *
12975830 ATTGTGAAGAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGCGG-CCAT
519 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCAT
* * *
12975894 TGTATGAATTTACGAGCCATAAAAATGGCATTAGCATGTAGAAATATGAAGATTTGCCTAAACCC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
12975959 ACCTACCATCCTATCGATCCACAGCTTGCACATCCCATCTCTCTCGCCGGCATAGTGCCCGCCCG
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCG
* * * * ** *
12976024 CCCACCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAACCTAAGATCGGACC
713 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** * *
12976089 AGACCGAGGGTTGTGGCAGCAGCTTCGACAGCACGTAGAGGGGGACCCGATCGATCCCCAGCTTG
778 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTG
* * ** * *
12976154 CGCATCGCGGCCCTCAAGCCGGCTGAGCG-GCGCATGCTCGTTTCGTGGGTTGACTTAG
843 TGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
12976212 GCATACGGAGTTGATTCCC-GATCTACGCATACGGAGTTCATTCCGAGTCTAAGATCAGATCAGA
1 GCATACGGAGTTAATTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA
* * * * *
12976276 CCGAGGGTTATGGTAGCACATACTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCATCGGG
65 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGG
* * * *
12976341 GCACCATCGTCGGAGCATCGCCGAAGAATCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGGG
130 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* *
12976406 GCCGGGGGTGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCC
195 GCCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
12976471 TATCCTTCGTCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGC
260 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12976536 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAATTCTTGTAC
325 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
12976601 ACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
390 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * * *
12976666 GTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGCAAAACGTTCCGAAAA
455 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAA
** * *
12976731 TAATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AGGAGACCATT
520 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATT
* * * * *
12976795 GTATGAATTTACAAGACATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCA
584 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA
* * ***
12976860 CCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCAGGCCGACGTAGTGCCCGCCCGC
649 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGC
* * * * * *
12976925 CCGCCCGCCTACTCATTTCGTCAGTTGTCTTAGGCATACAGAGTTCATTCCAAGTGTAAGATCAG
714 CCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
12976990 ACCGGACCGAGGGTTACGGCAGTAGGATCGACAACGCGTAGAGGGGGACCCGACCGATCCTCAGC
775 ACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCAGC
* *
12977055 TTGTGCATACCGCCCCTCTGGCCGGTTGAGCGCCCACACG--C---TC----G-T---TT--
840 TTGTGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
12977102 -CAT--GG-GTTAA----C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAC
1 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * * **
12977156 CGAGGGTTACGGCAACACATGCTGGGCTCGGACATGTGCTAGTGCCACATTTTTCTTTGTCGGGG
66 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
* * *
12977221 CACCATCGTCGGAGTATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* * *
12977286 CCAGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTT
196 CCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
12977351 ATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTATAGGTTTGCT
261 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
**
12977416 GCCAGTAGTAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
326 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** * * *
12977481 CTTCGAGTTTTTAGCTGAATTTTGTTT-TGCACACCAAAAAAAATACGAGGATCACATCTACCAG
391 CTTCGAGTTTTTAGCTGAATTTT-TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * *
12977545 GTTTGGCACCAAAACTCTTTCTGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAA
455 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAA
* *
12977610 TCGTGAAGAATAGAAAACGAGTCGTCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTG
520 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
12977675 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
585 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* *
12977740 CTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCATAGT----GCCCGCC
650 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCC
* * * * * **
12977801 CGTCCGCTTGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGAT-AGGACAA
715 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCG
** * * * * *
12977865 GACTGAGGGTTATGGTAGCAGGATC-AGTAGCATGTAGAGGGGGACCCGGCCGATCCTCGGCTTG
779 GACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTG
* * * * * * * *
12977929 GGCATCCCGCCCCTCTGGTCTGTTAAGCGCCCGTACGCTCATTTCGTGGGTTAACTTAG
843 TGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* **
12977988 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGAC
1 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * * * ** * *
12978053 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCCGATGCGGCATTTTTCTTCACCGAGG
66 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
* * * *
12978118 CACCATCGTCGGAGCATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTTCGTCAATCGGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* * * *
12978183 CCGAGGG-GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGGCCCCT
196 CCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
12978247 ATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGC-GGTTTGC
261 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGC
* *
12978311 TGCCAGTAGCTATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
325 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * ** * *
12978376 ACTTTGTGTTTTTAACTGAATTTTTTTACGCATGCCCAAAAAAATACAAGGATCATGTCTACCAA
390 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* *
12978441 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTGAAAAA
455 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAA
12978506 TCGTGAAAAA-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
520 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** * ** *
12978570 TATGAATTTACAATTCATAAAAATGCCATTGGCACATAGAAATATGAAGATGTGCCCAAACCCAC
585 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* **
12978635 CTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCC
650 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTG----CCCGCC
* * * *
12978700 CGCCCGCGCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATCAGA
711 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * * ** * * *
12978765 CCGGACCT-AGGGCTGCAACAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGTCGAACCCCGGC
776 CCGGA-CTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCAGC
* * * * *
12978829 TTGTGCATCCCGCCCCTTTGGTCGGTTGAGCTCCCGTACGCTCGTTTCGTGGGTTGACTTAG
840 TTGTGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12978891 GCATACGGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCTGATC-GAA
1 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-A
* * * * ** ** * *
12978954 CCGAGGGTTGCTGCAGAACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGA
65 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGG
* * * * *
12979019 GCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGGTGGCACTGGGGTTCCGTCGATCGGGGGG
130 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* ** *
12979084 GCCAGGGGGT--TGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGTACTTATATTGGGCCC
195 GCC-GGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * * *
12979147 TTGTCCCTCATCAAACCTCGAGAACTGACACCCCCTTAGAGAGCATTTGAGATTTTACCGGTTTG
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
12979212 CTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTATA
324 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * ** *
12979277 CACTTTGCGTTTTTAGCTGAATTTTTTTACGCATGCCAACAAAAATACAAGGATCACGTCTACCA
389 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
** *
12979342 AGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-AAGTGGCAAAAAGTTTCAAA
454 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CCGAAAAAAGTTTCAAA
* *
12979405 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCAT
518 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
12979470 TTTATGAATTTACAAGCCATAAAAATGGCATTGGCA
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
12979506 CACCCGTCCG
Statistics
Matches: 5208, Mismatches: 652, Indels: 233
0.85 0.11 0.04
Matches are distributed among these distances:
870 2 0.00
871 128 0.02
873 6 0.00
874 43 0.01
875 131 0.03
876 3 0.00
879 605 0.12
880 12 0.00
881 2 0.00
882 3 0.00
883 572 0.11
884 10 0.00
886 7 0.00
887 7 0.00
888 2 0.00
889 5 0.00
890 5 0.00
892 2 0.00
893 1 0.00
894 2 0.00
895 328 0.06
896 304 0.06
897 157 0.03
898 9 0.00
899 458 0.09
900 569 0.11
901 533 0.10
902 470 0.09
903 520 0.10
904 133 0.03
905 5 0.00
907 1 0.00
908 1 0.00
909 166 0.03
910 2 0.00
911 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
CCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGTGC
ATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12975713 original size:883 final size:877
Alignment explanation
Indices: 12972657--12979505 Score: 8008
Period size: 883 Copynumber: 7.7 Consensus size: 877
12972647 CCCAGTCTAA
* ** * *
12972657 GCATACGGAGTTCATTCCCAGTATAAGATCAGATC-AGACCGAGGGTTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGA-ACCGAGGGTTACGGCAGCACATGCTGG
** * * * * **
12972721 GCTCAGG-CATGTGCTGGTGCCATATTTTTCTTCATCGAGGCACCATCGCCGGATCATCACCGGA
65 GCTC-GGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * *
12972785 GAACCTAACCGGCGGCATTGGGGTTCAGGCGATC-GGGGGGCC-GGGGGGGTGTGTGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGAT
* * *
12972848 GTGCAATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
12972913 CACACCCCCTTAAAAAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12972978 AATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * *
12973043 TTTTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGCTTGGGGACAAAACTCCTTCTGGA
389 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
12973108 AAAATTTTAAAAAATCCCAAACCGGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
454 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
12973173 CTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12973238 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCTTATCGATCCACGGCTT
584 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
12973303 GTGAATCCCGTCTCTTTGGCCGGCATAGT----GCCCGCCCG--CCC-GCTCGTTTCATCGGTTG
649 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCCTGCTCGTTTCGTCGGTTG
* * * *
12973361 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAAGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* *** *
12973426 TCGGCAGCATGCAGAAGGGGACCCGACCGATCCTCAGCTTGTGCATCCTGCCCCTCTGGCCGGCT
779 TCGACAGCGCACAGAGGGGGACCCGACCGATCCTCAGCTTGTGCATCC-GCCCCTCTGGCCGGCT
*
12973491 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTTG
843 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
12973526 CCATACGGAGTTCATTCCAAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGTC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-T-G-G---A----C---C---G---A-AC----C
* * ** ** * **
12973591 TGAGGGTTACGGCAGTACATGCTGGGCTCGGGA-ATGTGCTGCTATCATATTTTTCATCACCGGG
41 -GAGGGTTACGGCAGCACATGCTGGGCTC-GGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * *
12973655 GCACCATTGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG
104 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* *
12973720 GCCGACGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCC
169 GCC-A-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
12973785 CCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
232 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
12973850 GCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
297 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* ** ** *
12973915 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCACACCAAAAAAAATATGAGGATCACATCTACC
362 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
** ** * * * *
12973980 GGGTTTGGCACCAAAACT-CTTTCGAAAAAAATTTTAAAAAATCTCAAACTGAAAAAAGTTTCAA
427 AAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
*
12974044 AAATCGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
491 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
12974109 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
556 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
** *
12974174 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATGGTGCCCGCCC
621 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* *
12974239 GCCCG--CCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCG
686 GCCCGCTCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * * * * *
12974301 GACCAGACTGAGGGTTGTGGCAGCAGCTTCGACAGCACATAGAGGGGGACTCGATCGATCCCCAG
751 GACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCGCACAGAGGGGGACCCGACCGATCCTCAG
* ** * * * *
12974366 CTTGCGCATCGCGCCCCTCAAGCCGACTGAGCGACCGCATGCTCGTTTCGTGGGTTGACTTAG
816 CTTGTGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
12974429 GTATACGGAGTTAATTCCCGATCTACGCATACGGAGTTCATTCCGAGGGTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCC-A-GT---C-TA---AG---ATT------G---GA-CCG---A-AC
* * * *
12974494 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
40 CGAGGGTTACGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * *
12974559 CACCATCATCGGAGCATCGCCGAAGAACCTAACTGGCGGCATTGGGGTTCTGGCGTTCGGGGGGG
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* ** *
12974624 CC-GGGGGTGGTGTGTGCACATGATGCACGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCC
170 CCAGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
12974688 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12974753 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTAC
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
12974818 ACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
12974883 GTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCTCGAACCGTAAAACGTTTCAAAAA
429 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
** *
12974948 TAATGAAAAATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
494 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** * *
12975013 TATGAATTTACAAGAAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
559 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* * *
12975078 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCAGGCCGACGTAGTGCCCGCCCGCC
624 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * *
12975143 CGCTCGCCTGTTTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTGTAAGAT
689 CGCTC-CC----TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
12975208 CAGACCGGATCGAGGGTTGCGGCAGTAGGATCGACAGTGCACAGAGGAGGACCCGGCCGATCCTC
749 CAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCGCACAGAGGGGGACCCGACCGATCCTC
* * * *
12975273 AACTTGTGCATACCGCCCCTCTGGCCGGCTGAGCGCCCACATGCTCGTTTTATGGGTTGACTTAG
814 AGCTTGTGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
12975338 GCATACGGAATTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
12975403 CTCGGACATGTGCTGGTGCCGTATTTTTATTCGTCAGGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
12975468 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGAGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGT
* *
12975533 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12975598 CACCCTCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTA-CCAATTAAAGTGTTTGAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAA
* *
12975662 ATGGGGGA-ACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
325 AT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * * * ** * **
12975726 TTTTGCACACCAAACAAAATACAAGGATCACATCTACCAGGTTTGGCACCAAAACTCTTTCTAAA
389 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * * * *
12975791 AAAATTTAAAAAAATCTCGAACCAAAAAAATTTTGAAAAATTGTGAAGAATAGAAAATGAGTCGT
454 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
12975856 CTTGCCATGAAACTTCATGTGAAGGCTTAAGCGG-CCATTGTATGAATTTACGAGCCATAAAAAT
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
12975920 GGCATTAGCATGTAGAAATATGAAGATTTGCCTAAACCCACCTACCATCCTATCGATCCACAGCT
583 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
12975985 TGCACATCCCATCTCTCTCGCCGGCATAGTGCCCGCCCG-CC-CACCC-ACTCGTTTCATCGGTT
648 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCCTGCTCGTTTCGTCGGTT
* ** * * *
12976047 GGCTTAGGCATACAGAGTTCATTCCCAACCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGC
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * ** * * * * **
12976112 TTCGACAGCACGTAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCGCGGCCCTCAAGCCGGC
778 ATCGACAGCGCACAGAGGGGGACCCGACCGATCCTCAGCTTGTGCATC-CGCCCCTCTGGCCGGC
* * *
12976177 TGAGCG-GCGCATGCTCGTTTCGTGGGTTGACTTAG
842 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
12976212 GCATACGGAGTTGATTCCCGATCTACGCATACGGAGTTCATTCCGAGTCTAAGATCAGATCAGAC
1 GCATACGGAGTTCATTCCC-A-GT---C-TA---AG---ATT----G-----GA-CCG---A-AC
* * * * * *
12976277 CGAGGGTTATGGTAGCACATACTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGG
40 CGAGGGTTACGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
12976342 CACCATCGTCGGAGCATCGCCGAAGAATCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGGGG
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* *
12976407 CC-GGGGGTGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCC
170 CCAGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
12976471 TATCCTTCGTCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGC
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12976536 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAATTCTTGTAC
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
12976601 ACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * *
12976666 GTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGCAAAACGTTCCGAAAA
429 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
** * *
12976731 TAATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AGGAGACCATT
494 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATT
* * * * *
12976795 GTATGAATTTACAAGACATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCA
558 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA
* * *
12976860 CCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCAGGCCGACGTAGTGCCCGCCCGC
623 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * * * * *
12976925 CCGCCCGCCTACTCATTTCGTCAGTTGTCTTAGGCATACAGAGTTCATTCCAAGTGTAAGATCAG
688 CCGCTC-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * **
12976990 ACCGGACCGAGGGTTACGGCAGTAGGATCGACAACGCGTAGAGGGGGACCCGACCGATCCTCAGC
752 ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCGCACAGAGGGGGACCCGACCGATCCTCAGC
* * *
12977055 TTGTGCATACCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTAACTTAG
817 TTGTGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
12977117 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
12977182 CTCGGACATGTGCTAGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGTATCGTCGGAGA
66 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
12977247 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGAGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGT
* *
12977312 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAGCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * **
12977377 CACCCCCTTAAAGATCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
12977442 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TT
** * * * ** * *
12977507 T-TGCACACCAAAAAAAATACGAGGATCACATCTACCAGGTTTGGCACCAAAACTCTTTCTGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
12977571 AAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAGAATAGAAAACGAGTCGTC
455 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12977636 TTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
12977701 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
585 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12977766 CGCATCTCGTCTCTCTGGCCGGCATAGT----GCCCGCCCG-T-CC-GCTTGTTTCATCAGTTGG
650 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCCTGCTCGTTTCGTCGGTTGG
* * * ** *
12977824 CTTAGGCATACGGAGTTCATTCCCTGTCTAAGAT-AGGACAAGACTGAGGGTTATGGTAGCAGGA
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCGGCAGCAGGA
* **** * * * * * *
12977888 TC-AGTAGCATGTAGAGGGGGACCCGGCCGATCCTCGGCTTGGGCATCCCGCCCCTCTGGTCTGT
779 TCGA-CAGCGCACAGAGGGGGACCCGACCGATCCTCAGCTTGTGCAT-CCGCCCCTCTGGCCGGC
* * * * *
12977952 TAAGCGCCCGTACGCTCATTTCGTGGGTTAACTTAG
842 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
12977988 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---ATT----G-----GA-CCGA----AC
* * * * * * ** *
12978053 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCCGATGCGGCATTTTTCTTCACCGAGG
40 CGAGGGTTACGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
12978118 CACCATCGTCGGAGCATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTTCGTCAATCGGGGGGG
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* * * *
12978183 CC-GAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGGCCCCT
170 CCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
12978247 ATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGC-GGTTTGC
235 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGC
* *
12978311 TGCCAGTAGCTATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * ** * *
12978376 ACTTTGTGTTTTTAACTGAATTTTTTTACGCATGCCCAAAAAAATACAAGGATCATGTCTACCAA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
*
12978441 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTGAAAAA
429 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
12978506 TCGTGAAAAA-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
494 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** * ** *
12978570 TATGAATTTACAATTCATAAAAATGCCATTGGCACATAGAAATATGAAGATGTGCCCAAACCCAC
559 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* *
12978635 CTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCC
624 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * *
12978700 CGC-CCGCGCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATCAG
689 CGCTCC-C-TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * ** * * * * ** * * *
12978764 ACCGGACCTAGGGCTGCAACAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGTCGAACCCCGGC
752 ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCGCACAGAGGGGGACCCGACCGATCCTCAGC
* * * * * *
12978829 TTGTGCATCCCGCCCCTTTGGTCGGTTGAGCTCCCGTACGCTCGTTTCGTGGGTTGACTTAG
817 TTGTGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
12978891 GCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCTGATCGAACC
1 GCATACGGAGTTCATTCCCAG--T---C-TA--AG---ATT----G-----GA-C----CGAACC
* * * * * * *
12978956 GAGGGTTGCTGCAGAACATGCTGGGCTC-GAGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGAG
41 GAGGGTTACGGCAGCACATGCTGGGCTCGGA-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
12979020 CACCATCGCCGGAGCATCGCCAGAGAACCTGACCGGTGGCACTGGGGTTCCGTCGATCGGGGGGG
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* * ** * *
12979085 CCA-GGGGGTTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGTACTTATATTGGGCCCTT
170 CCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
12979149 GTCCCTCATCAAACCTCGAGAACTGACACCCCCTTAGAGAGCATTTGAGATTTTACCGGTTTGCT
235 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12979214 GCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTATACA
300 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * ** *
12979279 CTTTGCGTTTTTAGCTGAATTTTTTTACGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
365 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
**
12979344 TTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-AAGTGGCAAAAAGTTTCAAAAA
430 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CCGCAAAAAGTTTCAAAAA
* * *
12979407 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTT
494 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
12979472 TATGAATTTACAAGCCATAAAAATGGCATTGGCA
559 TATGAATTTACAAGCCATAAAAATGGCATTGGCA
12979506 CACCCGTCCG
Statistics
Matches: 5164, Mismatches: 654, Indels: 291
0.85 0.11 0.05
Matches are distributed among these distances:
869 24 0.00
870 4 0.00
871 168 0.03
872 2 0.00
873 2 0.00
874 43 0.01
875 132 0.03
876 3 0.00
877 2 0.00
879 566 0.11
880 16 0.00
881 2 0.00
882 4 0.00
883 570 0.11
884 14 0.00
886 3 0.00
887 3 0.00
888 2 0.00
889 1 0.00
890 5 0.00
891 1 0.00
892 2 0.00
893 4 0.00
894 1 0.00
895 271 0.05
896 306 0.06
897 117 0.02
898 5 0.00
899 477 0.09
900 564 0.11
901 532 0.10
902 472 0.09
903 472 0.09
904 134 0.03
905 44 0.01
906 2 0.00
907 1 0.00
908 9 0.00
909 171 0.03
910 1 0.00
912 2 0.00
913 1 0.00
914 4 0.00
917 1 0.00
918 2 0.00
920 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (877 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCCTGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
GACAGCGCACAGAGGGGGACCCGACCGATCCTCAGCTTGTGCATCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:12978017 original size:26 final size:26
Alignment explanation
Indices: 12977988--12978040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12977978 GTTAACTTAG
*
12977988 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12978014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12978040 G
1 G
12978041 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12978926 original size:25 final size:26
Alignment explanation
Indices: 12978891--12978942 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
12978881 GTTGACTTAG
12978891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12978917 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12978942 G
1 G
12978943 ATCTGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12980239 original size:752 final size:750
Alignment explanation
Indices: 12978796--12980258 Score: 2187
Period size: 752 Copynumber: 1.9 Consensus size: 750
12978786 CAGGATCGGC
* * * ** * *
12978796 AGCACGCAGAGGGGGACTCGGTCGAACCCCGGCTTGTGCATCCCGCCCCTTTGGTCGGTTGAGCT
1 AGCACGCAGAGGGGGACTCGGACCAACCCCGGCTTGTGCATCCCGCCCCTCTGGTCGACTAAGCG
* *
12978861 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGAG
66 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAAGAG
* *
12978926 TTCATTCCCAGTCTAAGATCTGATCGAACCGAGGGTTGCTGCAGAACATGCTGGGCTCGAGCATG
131 TTCATTCCCAGTCTAAGATCTGATCGAACCGAGGGTTGCTGCAGAACATACTAGGCTCGAGCATG
* * * * *
12978991 TGCTGGTGCTGCATTTTTCTTCGCCAGAGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGG
196 TGCTGGTGCCGCATTTTTCTTCACCAGAGCACCATCGCCGGAGCAACGCCAGAGAAACTAACCGG
* * ** *
12979056 TGGCACTGGGGTTCCGTCGATCGGGGGGGCCAGGGGGTTGTGCGCACATTATGTGCGATGGGTGC
261 CGGCACTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGCGTGCGCACATGATGTGCGATGGGTGC
* * * * * * *
12979121 TGGTACTTGGTACTTATATTGGGCCCTTGTCCCTCATCAAACCTCGAGAACTGACACCCCCTTAG
326 TGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAA
* * * * *
12979186 AGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTT
391 AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCT
** * *
12979251 TTTTCAAATGGTCACAAAATCTTATACACTTTGCGTTTTTAGCTGAATTTTTTTACGCATGCCAA
456 TTTTCAAATGGTCACAAAATCTTATACACTCCGAGTTTTTAGCTGAATTTTTTTA-GCAAGCCAA
*
12979316 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAA
520 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCGAAAAAATTTTAAAAAA
* *** * * *
12979381 TCTCAAGTGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCGTGAAACT
585 TCCCAAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACT
* *
12979446 TCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACACCC
650 GCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACCC
12979511 GTCCGCCTAAGATCAGATCAGACCAAGGGATACGAT
715 GTCCGCCTAAGATCAGATCAGACCAAGGGATACGAT
* * *
12979547 AGCACGCAGAGGGGGAC-CTGACCAATCCCTGGCTTGTGCATCCTGCCCCTCTGGTCGACTAAGC
1 AGCACGCAGAGGGGGACTCGGACCAA-CCCCGGCTTGTGCATCCCGCCCCTCTGGTCGACTAAGC
* *
12979611 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGAATACAG
65 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATA-AG
* * * * *
12979676 AGTTCATTCCCAGTCTAAGATC-GAATCGGATCGAGGGTTG-TGGCAGCACATACTAGGCTTGGG
129 AGTTCATTCCCAGTCTAAGATCTG-ATCGAACCGAGGGTTGCT-GCAGAACATACTAGGCTCGAG
* * * * *
12979739 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCATCATCGCTGGAGCAACGCCAGAGAAACTAA
192 CATGTGCTGGTGCCGCATTTTTCTTCACCAGAGCACCATCGCCGGAGCAACGCCAGAGAAACTAA
* *
12979804 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGCGTGCGCACATGATGTGCGATGG
257 CCGGCGGCACTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGCGTGCGCACATGATGTGCGATGG
* * *
12979869 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCAT
322 GTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCAC
12979934 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
387 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
*
12979999 ACCTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTGT-GCAAG
452 ACCTTTTTCAAATGGTCACAAAATCTTATACACTCCGAGTTTTTAGCTGAATTTTTT-TAGCAAG
* *
12980063 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTA
516 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAATCCTTCCGAAAAAATTTTA
*
12980128 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATCTTGCCATG
580 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATCTTGCCATG
*
12980193 AAACTGCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
645 AAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
12980258 C
710 C
12980259 GCAGAAATAT
Statistics
Matches: 634, Mismatches: 72, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
750 5 0.01
751 151 0.24
752 477 0.75
753 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (750 bp):
AGCACGCAGAGGGGGACTCGGACCAACCCCGGCTTGTGCATCCCGCCCCTCTGGTCGACTAAGCG
CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAAGAG
TTCATTCCCAGTCTAAGATCTGATCGAACCGAGGGTTGCTGCAGAACATACTAGGCTCGAGCATG
TGCTGGTGCCGCATTTTTCTTCACCAGAGCACCATCGCCGGAGCAACGCCAGAGAAACTAACCGG
CGGCACTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGCGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAA
AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCT
TTTTCAAATGGTCACAAAATCTTATACACTCCGAGTTTTTAGCTGAATTTTTTTAGCAAGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
CCCAAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTG
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACCCG
TCCGCCTAAGATCAGATCAGACCAAGGGATACGAT
Found at i:12980550 original size:26 final size:26
Alignment explanation
Indices: 12980521--12980573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12980511 GTTGACTTAG
* *
12980521 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12980547 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12980573 G
1 G
12980574 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12981437 original size:26 final size:26
Alignment explanation
Indices: 12981401--12981453 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12981391 GTTGACTTAG
12981401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12981427 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12981453 G
1 G
12981454 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12981817 original size:890 final size:879
Alignment explanation
Indices: 12979547--12982182 Score: 3385
Period size: 890 Copynumber: 3.0 Consensus size: 879
12979537 GGGATACGAT
* * * *
12979547 AGCACGCAGAGGGGGACCTGACCAATCCCTGGCTTGTGCATCCTGCCCCTCTGGTCGACTAAGCG
1 AGCACGCAGAGGGGGACCTGACCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * *
12979612 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGAATACAGA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * * * * *
12979677 GTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGTGGCAGCACATACTAGGCTTGGGCAT
131 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCAT
* * * *
12979742 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCATCATCGCTGGAGCAACGCCAGAGAAACTAACCG
196 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-CCGGAGC-ACG--AGAGAACCTGACCG
* *
12979807 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGCGTGCGCACATGATGTGCGATGGGTG
257 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* **
12979872 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCATTTA
322 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
12979937 AAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACC
387 AAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* * *
12980002 TTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTGTGCAAGCCAA
452 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAA
* * *
12980067 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAA
517 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * *
12980132 ATCCCAAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATCTTGCCATGAAAC
582 ATCCCGAACCGTAAAATGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
* * *
12980197 TGCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
647 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACGCA
* *
12980262 GAAATATGAAGGTGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
712 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * * **
12980327 CTCTTACCGGCGTAGTGCTCGCCCACCCGACGTAG-G-T-A-TACAG-AGTT-CATT-CCCA-AT
777 CTCTGGCCGGCGTAGTGCTCGCCCACCCGCCGT-GCGCTCATTTC-GTGGTTGC-TTAGGCATA-
* *** * * * * * * *
12980384 CTGAGATTGGGT-CAGATCGAAGGTTACG--GTAGTAGGATCGGT
838 CAGAG-TTCATTCCAG-TCTAAGATCA-GATGGACTAGGATCAGC
* * * * * * * *
12980426 AGCATGCAGAGAGCGACCCGACTAATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGATTGAGTG
1 AGCACGCAGAGGGGGACCTGACCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCG
* * *
12980491 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATATAGAGTTTATTCCCAGTCTAAGCATACAGA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGA
* ** *
12980556 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCATTGTGACAGCACATGCTGGGCTCAGGCAT
131 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCAT
* ** *
12980621 GTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCAT--C---GC-C-AGAGAACCTGACCGACAG
196 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCCCGGAGCACGAGAGAACCTGACCGACGG
* * * *
12980679 TATTGGGGTTTCAGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
261 CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
12980744 TACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGA
326 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
12980809 GCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
391 GCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* *
12980874 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCGACAA
456 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAACAA
* ** * *
12980939 AAATACGAGGATCACGTCTACCAAGTTTGGATCCAAAACTCCTTGCGAAAAAATTTTAAAAAGTC
520 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
12981004 CCGAACCATAAAATGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
585 CCGAACCGTAAAATGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
* * *
12981069 ACGTGACGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACACAAAA
650 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACGCAGAA
* *
12981134 ATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTC
715 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
*
12981199 TGGCCGGCGTAGTGCTCGCCCGCCCGTCCGTGCGCTCATTTCGTTGGTTGGCTTAGGCATACAGA
780 TGGCCGGCGTAGTGCTCGCCCACCCG-CCGTGCGCTCATTTCG-TGGTT-GCTTAGGCATACAGA
* *
12981264 GTTCTTTCCAAGTCTAAGATCAGATTGGACTGAGGTTACAGC
842 GTTCATTCC-AGTCTAAGATCAGA-TGGACT-AGGAT-CAGC
* * *** * *
12981306 AGCACGCAGAGGGGGACCT-AGCCGATCCCCGCCTTACACATCCCGCTCCTCTGGCCGGCTGAGC
1 AGCACGCAGAGGGGGACCTGA-CCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGC
* * * * **
12981370 GCCCGCACGTTCGTTTTACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
65 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAG
* *
12981435 AGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTT-TCGACAGCACATGCTGGGCTCGGGC
130 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGT-GACAGCACATGCTGGGCTCGGGC
* * * * *
12981499 ATGTGCTGGTGCTGCATTTTTCTTCGTCAGAGCACCATCACCGGAGCATCGGGGGAGAACCTGAC
194 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-CCGGAGCA-C--GAGAGAACCTGAC
* * * *
12981564 CGACGGCATTGGGGTTCCGGCAATC-GGGGGGTCGGGGGGGTGTACGCACATGATGTGCAATGGG
255 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
12981628 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
320 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
12981693 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAGTGGGGACA
385 TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* *
12981758 CTTTTTTCAAATGGTCACAAAATCTCGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCATGC
450 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTGTGCATGC
* * * *
12981823 CAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAA
514 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * * *
12981888 AAAATCTCGAACTGCAAAATGTTTCAATAATCGTCAAAAATAGAAAATGAGTCGTCTTGCCATGA
579 AAAATCCCGAACCGTAAAATGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGA
*
12981953 AACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTT-TCAAGCCATAAAAATGGCATTGGCA
644 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAT-AAGCCATAAAAATGGCATTGGCA
* * * * *
12982017 TGCAGAAATTTGAAGATGTGCCCAAACCCTCCTACCACCCTATCGATCCATGGCTTGCGCATCCC
708 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *** * *
12982082 GTCTCTATGGTCGGCGTAGTGC-CTGCCCTCCCGCCCACCCGCTCGTTTCATCGGTTCGCTTAGG
773 GTCTCTCTGGCCGGCGTAGTGCTC-GCCCACCCG-CCGTGCGCTCATTTCGT-GGTT-GCTTAGG
*
12982146 -ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
834 CATACAGAGTTCATT-CCAGTCTAAGATCAGA-TGGAC
12982183 CAAGGGTTAC
Statistics
Matches: 1521, Mismatches: 199, Indels: 64
0.85 0.11 0.04
Matches are distributed among these distances:
868 239 0.16
869 277 0.18
870 4 0.00
871 2 0.00
872 2 0.00
873 4 0.00
874 3 0.00
875 6 0.00
876 15 0.01
877 3 0.00
878 3 0.00
879 203 0.13
880 193 0.13
883 1 0.00
886 2 0.00
888 1 0.00
889 35 0.02
890 497 0.33
891 31 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (879 bp):
AGCACGCAGAGGGGGACCTGACCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCCCGGAGCACGAGAGAACCTGACCGACGG
CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGTAAAATGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCTCGCCCACCCGCCGTGCGCTCATTTCGTGGTTGCTTAGGCATACAGAGTTC
ATTCCAGTCTAAGATCAGATGGACTAGGATCAGC
Found at i:12982960 original size:26 final size:26
Alignment explanation
Indices: 12982924--12982976 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12982914 GTTGACTTAG
12982924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12982950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12982976 G
1 G
12982977 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12984748 original size:26 final size:26
Alignment explanation
Indices: 12984712--12984764 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12984702 GTTGACTTAG
12984712 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
12984738 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
12984764 G
1 G
12984765 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:12985647 original size:26 final size:26
Alignment explanation
Indices: 12985613--12985663 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12985603 TGACTTAGGA
* *
12985613 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
12985639 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12985664 ACTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:12985766 original size:899 final size:891
Alignment explanation
Indices: 12982469--12988231 Score: 7157
Period size: 898 Copynumber: 6.5 Consensus size: 891
12982459 CAGTAGCCAC
** * **
12982469 CACGTCTACCAAGTTTGGGGATAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAA
** * * * *
12982534 AAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
12982599 GAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * *
12982664 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTAGCCGGCGAAG
196 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
12982729 TGCCTGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
261 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** * ** * * * * *
12982794 CAGACCGGATTGAGGGTTGCGGCAATAGGATTGGCAGCATGTAGAGGGGGACCCGGCCGATCCCC
326 CAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCC
* * ** * *
12982859 GGCTTACGCATCCTACCCCTCTGGCTGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
391 GACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12982924 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
456 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
12982989 CGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGTCGGGG
521 CGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-C-GGG
*
12983054 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATC-GGGGGG
584 CACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGC-GCATTGGGGTTCCGACGATCGGGGGGG
* *
12983118 TCGGGGGGGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
647 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
12983183 TCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGTGCATTTGAGATTTTATAGGTTTACTGC
712 TCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
** ** * *
12983248 CAGTAGCCATTAAAGTACCTGAAATAAGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACC
777 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12983313 TCGAGTTTTTAGCTGATTTGTTTTGTGCATGCCAAAAAAAATACAAGGAT
842 TCGAGTTTTTAGCTGATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGAT
* * *
12983363 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCAAACTGTAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAA
** * * *
12983428 AAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCATCCTGCCTTGAAACTTCACGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
12983493 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
** * *
12983558 GCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGCCTCTCTGGCCGGCGTAG
196 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-
* * * * *
12983623 TGCCCGCCCGCCAGCCCGCTCGTTTCGTCGATTGGCTTGGGCATAAGGAGTTCATTCCCAATCTA
260 -G--CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
12983688 AGATCAGACCAGACCGAGGGTTGTTGCAGCAGGATCGACAGCACGCAGAGGGGGA-CCTGACCAA
322 AGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAG-CCGA
* * * ** *
12983752 TTCTCGACTTACGCATCCCAACCCTCTGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGA
386 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * *
12983817 CTTAGGCCTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT-TGAAGTTCAGA
451 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT-AAGATCGGA
* * * * **
12983881 TCAGACAGAGGGTTACGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCATTTTTTTCTTCG
515 CCAGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
* * * *
12983946 CCGGGGACTATCATCAGAGCATCGTCGGAGAACCTGACTGGCAGCATTGGGGTTCCGACGATCGG
580 -CGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGC-GCATTGGGGTTCCGACGATCGG
* * **
12984011 AGGGGCCGTGGGGGTGTGCAAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
642 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
12984076 CCCTATCCCTCATCAAACCTAGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
707 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * * *
12984141 ACTGCCAGTAGCCACTAAAGTGCCTGAAATAGGGACACTTTTTTCGAATGGTCACAAAATCTTGT
772 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
12984206 ACACCTCGAGTTTTTAGCTGATTTTTTTTATGCAAGCCAAAAAAAATACAAGGAT
837 ACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGAT
* * *
12984261 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAATATTTTAAAAAATCTCGAACCGCAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCTCAAACCGTAA
** * *
12984325 AAAGTTTTGAAAATCATGAAAAATAGAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
65 AAAGTTTCAAAAATCATGAAAAATAG-AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* ** *
12984390 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCAATTGGCCTAAAGAAATATAAAGA
129 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCATGCAGAAATATGAAGA
* * * *
12984454 TGTGCCTAAACCCACCTAACACCGTATCGATCAATGGCTTGCGCATCCCGTCTCTTTGGCCGGCG
193 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
12984519 TA--G--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCTA-TCTA
258 TAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTA
* ** * * *
12984579 AGATCAAACTGGACCGGGGGTTGTGGTAGCAGGATCGACAGCACG-AGAGGGGGATCCAGCCGAT
322 AGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGAT
* * * * * * *
12984643 CCTC-AGCTTGCGCATCCCACCCATCTGGTCGGCTAAGCGCCCGTAC-CTTCGTTTCGTGGGTTG
387 CCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC-TCGTTTCGTGGGTTG
* ** * *
12984706 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGAA
450 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
12984771 CCGGACCAAGGGTTGC-AGCAGCACATGCTAGGCTCGGGC-TCATGCTGGTGCTACATTTTTCTT
515 CCAGACCGAGGGTTACGA-CAGCACATGCTAGGCTCGGGCAT-GTGCTGGTGCCACATTTTTCTT
** ** * *
12984834 CATTGTGGCACCATCATCGGAGCATCCCCGGAGAACCTGACCGGTGTCATTGGGGTTCCGATGAT
578 C-GCG-GGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCG-CATTGGGGTTCCGACGAT
* *
12984899 CGGGGGGGCCGGGGGAGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
639 CGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
12984964 GGCCCCTTATCTCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCGTTTGAGATTTTATA
703 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACA
*
12985029 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAAT
767 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
12985094 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCAAGCCAAAAAAAATACAAGGAT
832 CTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGAT
* * * *
12985155 CATGTCCT-CCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAA
1 CACGT-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAA
*
12985219 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCT
65 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
12985284 TAAAGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCACGTAGAAATAAGAAGAT
130 TAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATGAAGAT
12985349 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
194 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
12985414 AGCGCCCGCCCGCCCGCTCGTTTCGTCAGTTAGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG
259 AGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
12985479 AT-TGAACCAGGCCGAGGGTTATGGCAGCAGGATC-ATCAGCATGCAGAGGGGGATCCAGCCGAT
324 ATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCAGCCGAT
* * * *
12985542 CCCCGACTTGCGCATCCCGCCCATCTGGCCGACTGAGCGCCCACACGATCGTTTCATGGGTTGAC
387 CCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
12985607 TTAGGAATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA-CTGGAC
452 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GGAC
* * * * *
12985671 CGGACCGAGGGTTGCCACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
516 CAGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-G
* * * * *
12985736 CAGGGCACCATCGTCGGAGCATCGCCGGAGAACTTGACCGACGACATTGGGGTTCTGGCGATCGG
580 C-GGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCG-CATTGGGGTTCCGACGATCGG
* *
12985801 GGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCT
642 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
12985865 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
707 CCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
12985930 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTT
771 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTT
*
12985995 GTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATA-CCAACAAAAATACAAGGAT
835 GTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCA-AGCCAAAAAAAATACAAGGAT
* * *
12986052 CACGTCCACCAAGTTTGGGGCCAAATCTCTTTCCGAAAAAATTTTAAAAAATCTCAAACC-TCAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGT-AA
* *
12986116 AAAGTTTAAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
65 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
12986181 TGAGGGACCATTGCATGAATTTACACGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
12986246 TGCCTAAACCCACCTAGCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGACGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-
* *
12986311 ACGCCCGCCCGCCTGCCCGTTCGCTCGTTTCGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCA
259 A-G--CGCCCGCCCG-CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
12986376 GTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGTGGGACCCAG
317 GTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAG
* * * * *
12986441 CCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGG
382 CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
12986506 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCGATTCTAAGATC
447 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * *
12986571 GGACCAGACCGAGGGTTACGACAACACATGCTGGGCTCGAGCAAGTGCTGGTGTCACATTTTTCT
512 GGACCAGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
* *
12986636 T---------CA--TCGGAGGATCGTCGGAGAACCTGTCCGGCGGCATTGGGGTTCCGACGATCG
577 TCGCGGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGGC-GCATTGGGGTTCCGACGATCG
* * * *
12986690 GGGGGGCC-TGGGGGTGTGCGCACACGATTTGCGATGGGTGCTGGTACTTGGCCATTATATTGGC
641 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
12986754 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
706 CCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
12986819 TAGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTTT
770 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * *
12986884 GTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
835 GTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGAT
* * * * *
12986941 CACGTCTACCAAGTTTGGGGTCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACTGTAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAA
** * * * *
12987006 AAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
12987071 AAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * ** *
12987136 GCCTAAACCCACCTACCACCGTCTC--T-C-TAGC---CG-A---CG--T-AGT-ACC--C--A-
196 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
12987181 --CCCGCCCGTCGGCTCGTTTTGTCGGTTGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAGAT
261 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *** * * * **
12987244 TAGATC-GAACCAAGAGTTGCAACAGCAGGATCGACAGCACGTAAAGGGTGACCTTGCCGATCCC
326 CAGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCC
* *** *
12987308 CGGCTTGTATATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-
390 CGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
12987371 ----TA--G-G--------CA---T----AT--AGAGTTCATTCCCAGTCTAAGATCAGACCGGA
455 GGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * *
12987412 CCGAGGGTTACAACAACACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGG
520 CCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-C-GG
* ***
12987477 GCACCA--T-----CA---TCGGAGAACCTGACCGGCGGGATTGGGGTTCCGACGATTAAGGGGG
583 GCACCATCTCGGAGCATCGTCGGAGAACCTGACCGGC-GCATTGGGGTTCCGACGATCGGGGGGG
** * * *
12987532 CCGGGGGGGTGTGCGTGCATGATGTGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCTTA
647 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
12987597 TCCCTCATCAAACCTCGAGAACTCACACCCTTTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTG
712 TCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
12987662 CCAGTAGCCATTAAAGTGTCTTAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACAC
776 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * **
12987727 TTCGAGTTTTTAGCTGAATTTTTTTGTACACGCCACCAAAAATACAAGGAT
841 TTCGAGTTTTTAGCTGATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGAT
* * * * *
12987778 CACGTTTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTGAAAAAATCTCGAACCGCAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAA
* *
12987843 AAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTTGGCATGAAACTTCACGTGAAAGG-T
66 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCT
*
12987907 TAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * *
12987972 TGCCTAAACCCACCTACTACCC-ATCGACCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGTGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
12988036 GTGAACGCCCACCCTCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
260 --G--CG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * * * * * *
12988101 GTCTAAGATCATACCAGACCGAGGGTTACT-ATAGTAGGATTGGCAGC-CTGCGGAAGGGCACCC
317 GTCTAAGATCAGACCAGACCGAGGGTT-GTGGCAGCAGGATCGACAGCAC-GCAGAGGGGGACCC
* ** * * * * *
12988164 TGCCGATCTTCGACTTGCGCATACCGACCCTTTGGCCGACTGAGCGCCCACACGCTCGTTTCATG
380 AGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
12988229 GGT
445 GGT
12988232 GCTGGTACTT
Statistics
Matches: 4273, Mismatches: 488, Indels: 244
0.85 0.10 0.05
Matches are distributed among these distances:
833 83 0.02
835 2 0.00
836 48 0.01
837 407 0.10
838 4 0.00
839 3 0.00
840 2 0.00
842 2 0.00
843 2 0.00
844 4 0.00
847 2 0.00
849 1 0.00
850 2 0.00
851 3 0.00
853 2 0.00
855 1 0.00
858 1 0.00
859 157 0.04
862 1 0.00
863 7 0.00
865 1 0.00
866 144 0.03
867 1 0.00
869 1 0.00
872 1 0.00
874 2 0.00
875 1 0.00
876 1 0.00
878 2 0.00
881 1 0.00
882 2 0.00
885 2 0.00
886 1 0.00
887 1 0.00
889 276 0.06
890 373 0.09
891 155 0.04
892 81 0.02
893 176 0.04
894 427 0.10
895 9 0.00
896 96 0.02
897 384 0.09
898 724 0.17
899 394 0.09
900 13 0.00
901 2 0.00
904 265 0.06
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAA
AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCC
GACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCGGGCA
CCATCTCGGAGCATCGTCGGAGAACCTGACCGGCGCATTGGGGTTCCGACGATCGGGGGGGCCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGAT
Found at i:12986144 original size:27 final size:26
Alignment explanation
Indices: 12986087--12986145 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
12986077 TCTCTTTCCG
* **
12986087 AAAAAATTTTAAAAAATCTCAAACCT
1 AAAAAAGTTTAAAAAATCTCAAAAAT
* *
12986113 CAAAAAGTTTAAAAAATCATGAAAAAT
1 AAAAAAGTTTAAAAAATC-TCAAAAAT
12986140 AAAAAA
1 AAAAAA
12986146 TGAGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.22
Consensus pattern (26 bp):
AAAAAAGTTTAAAAAATCTCAAAAAT
Found at i:12986551 original size:26 final size:26
Alignment explanation
Indices: 12986515--12986567 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12986505 GTTGACTTAG
*
12986515 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
12986541 GCATACAGAGTTCATTCCGATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12986567 G
1 G
12986568 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12989839 original size:26 final size:26
Alignment explanation
Indices: 12989809--12989861 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12989799 GTTGACTTAG
12989809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12989835 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12989861 G
1 G
12989862 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12990438 original size:903 final size:902
Alignment explanation
Indices: 12988226--12993273 Score: 6755
Period size: 902 Copynumber: 5.6 Consensus size: 902
12988216 CGCTCGTTTC
*
12988226 ATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12988291 CCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12988356 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
12988421 CATGCCAACAAAAATACAAGGATCAAGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
196 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
12988486 TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
261 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
12988551 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAGATGGCATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * **
12988616 AGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCGCAGCTTGTGCA
391 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
* * * * * *
12988681 TCCCGTCTCTCTGGCCGACGTATTGC-CTGTCCGTCCGCCCGCCATCTCATTTCATCAGTTGGCT
456 TCCCGTCTCTCTGGCCGACGTAGTGCTC-GCCCGCCCGCCCGCC-GCTCGTTTCATCGGTTGGCT
** * * * * * *
12988745 TAGGTGTACGGAGTTCATTCCCAGTCTAAGATCAGACCA-TAACGAGGGGTGCAGTAGCAGGATT
519 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGATCGAGGGTTGCGGCAGCAGGATC
* ** *
12988809 GGCAGCACGCAGAGGGGGTCCCTTTCGATCCCCGGCTTA-CGCATCCCGCCCCTCTGGCCGGCTG
583 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC-TAGCGCATCCCGCCCCTCTGGCCGACTG
** * *
12988873 AGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATG
647 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * ** *
12988938 CGTAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTATGGCAGCGCATGCTGGGCTCGG
712 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * * * * * **
12989003 GTAGGTGTTGGTACCGTATTTTTCTTCATCGGGGCACCGTCACCGGAGCATCGTCGGAGAACCTG
777 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTG
* * * * * *
12989068 ACCGACGACATTAGGGTTCCGGCGAT-AGGAGGGTCGGGGGGTGTGCGCACGTGATGTGCA
842 ACCGACGGCATTGGGGTTCCGGCGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
12989128 ATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12989193 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTACTGCCAGTAACCATTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12989258 GGACACTTTTTTCAAATGGTCACAAGATCTTGTACTA-TTCGAGTTTTTAGCTGAATTTTTTTGT
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** * * * *
12989322 GCATGCCAAAAAAAATAGAAAGATCGTGCCTACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAA
195 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
12989387 TTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
260 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
12989452 CCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
325 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
12989517 TGGCACACAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTTTCGGTCCACGGCTTGCGC
390 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
* * * * *
12989582 ATCCCGTCTCTCTGGCCAACGTAGTGCTCGCCCACCCGCCCGTTCACTCATTTCATCGGTTGGCT
455 ATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCT
* * *
12989647 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACAGGATCGAGGCTTGCGGCAGCAGGATCG
519 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATCG
* * * *
12989712 ACAGCAAGCAGAGGGGGACCCGGTCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGCCGATTGAG
584 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGCCGACTGAG
**
12989777 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
649 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
12989842 GAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
714 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
12989907 ATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGGC
779 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGAC
* * *
12989972 CGGCGGCATTGGGGTTCCGGCGACCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGTG
844 CGACGGCATTGGGGTTCCGGCGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
12990031 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCCCAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
12990096 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTCTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12990161 GGACACGTTTTTCGAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTGTTTTTGT
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGT
* * * * *
12990225 CCATGCGAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAA
195 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
12990290 TTTTAAAAAATCCCAAACCGTAAAATA-TTTAAAAAATCATGAAAAATAGAAAACGAGTCGCCTT
260 TTTTAAAAAATCCCAAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12990354 GCCATGAAACTTCACGTGAAGGC-TAATGAGACCATTATATGAATTTACAAGCCATAAAAATGGC
324 GCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
12990418 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
388 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
* * *
12990483 GTATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCG--G-TCGTTTCGTCGGTTGGC
453 GCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGC
* * * * ** *
12990545 ATAGGCAGACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATTAAGGGTTACGGCAGCAGGATC
518 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATC
* * * * *
12990610 GACAGCACGCAAAGGGGGACCCGATCGATCCCTGGTTTGCGCAT-CC-CCCCTCTGGCCGACTGA
583 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGCCGACTGA
* *
12990673 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATAC
648 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
12990738 AGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGATGTGACAGCACATGCTGGGCTTGGG
713 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** *
12990803 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGA
778 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGA
* ** *
12990868 CAGACGGTGTTGGGGTTCCGGCGATCGGTG-GGGCCGGGAGGGGTATGCGCACATGATGTGCG
843 CCGACGGCATTGGGGTTCCGGCGATCGG-GAGGGCC-GG-GGGGTGTGCGCACATGATGTGCG
* *
12990930 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12990995 CCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12991060 GGACAATTTTTTCAAATGGTCACAAAATCTTGTACACATCTAGTTTTTAGCTGAATTTTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * *
12991125 CATGCCGATGAAAATACAAGGATCACGTCTACCAAATTTGGGTCTAAAACTCCTTCCGAAAAAAT
196 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * ** ** * *
12991190 TTTTAAAAATCTCAAATCGTAAAAAGTTTTGAAAATTGTGAAAAATAGGAAACGAGTCATCTTGC
261 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
12991255 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * * *
12991320 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGCTGCAGGGCTTACGCA
391 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
* * *
12991385 TCCCGTCTCTCTGGCCCG-CGTAGTGCCCGCCCG-CCGCCCACCTGCTTGTTTCATCGGTTGGCT
456 TCCCGTCTCTCTGG-CCGACGTAGTGCTCGCCCGCCCGCCCGCC-GCTCGTTTCATCGGTTGGCT
* * * * * * *
12991448 TAGGCATACAGAGTTCACTACCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAGGATCG
519 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATCG
* * **
12991513 GCAGCACGCAGAGGGGGACCCGATTGATCCCCGGCCT-GCGCATCCCGCCCCTCTGGCTGGTTGA
584 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGG-CTAGCGCATCCCGCCCCTCTGGCCGACTGA
*
12991577 GCACCCACACGCTCGTTTCATGGGTTGAC-T-----TA--G-G--CA-T---A--C---G---A-
648 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
12991618 --AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGTGCTCGGG
713 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
12991681 CATGTGCTGGTGCCACATTTTTTTTCGTCGGGGCA-C--CATC---G-----CCGGAGAACCTGA
778 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGA
* * *
12991735 CCGACGGAATTGGGGTTCCGACGATC-GGAGGGCCGGGGGGGGTGTGCGCAAATGATGTGCG
843 CCGACGGCATTGGGGTTCCGGCGATCGGGAGGGCC--GGGGGGTGTGCGCACATGATGTGCG
* *
12991796 GTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12991861 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAAT-G
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12991925 GGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
12991990 CATGCCAACAAAAATAAAAGGACCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAT
196 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** ** ** *
12992055 TTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGGGTCGTCTTGC
261 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
12992120 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * * * *
12992185 GGCATGCAGTAATATGAAGATGTGCTTAAACCCACCCACCACCCTATCGATCCATGGCTTATGCA
391 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
* * * * **
12992250 -ACCGTCTCTCTGACCGACGTAGTGCCCGCCTGCCCGTCCTACCGCTCGTTTCATCGGTTGGCTT
456 TCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCG-CCCGCCGCTCGTTTCATCGGTTGGCTT
* * * *
12992314 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-AACCGAGGGTTACGACAGCAGGATCG
520 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGATCGAGGGTTGCGGCAGCAGGATCG
* * * * * *
12992378 GTAGCACGTAGAGGGGGACCC-AGTCGATCCTCGACTTGTGCATCCCGCCCCTC-GGCCGGA-TG
584 GCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGCC-GACTG
* ** * *
12992440 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGAAATACAGAGTTCATTCCCAATCTAAGCATA
647 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * * **
12992505 TGGAATTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTACAACAGCACATGCTGGGCTCGG
712 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
** *
12992570 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTG
777 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTG
** * * * * * * *
12992635 ACCGGTGGCATTTGGGTTTCGGCGATCGGGGGGGCTGAGGGGTGTGCGCACATGTTGTGTG
842 ACCGACGGCATTGGGGTTCCGGCGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * * * *
12992696 ATGGGTGCTGGTAATTGGCCCTTATATTGGCCCTCTGTCCGTCATCAAACTTCAAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
12992761 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCTTTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12992826 GGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
12992891 CATGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
196 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
**
12992956 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
261 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
12993021 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
12993086 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
391 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
* * * *
12993151 ACCTGTCTCTCTGGCCGACGTAGTG-TCCGCCCGCCGGCCCGCCCGCTCGTTTCGTCGGTTGGCT
456 TCCCGTCTCTCTGGCCGACGTAGTGCT-CGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCT
* * * *
12993215 TAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCA
519 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGGCAGCA
12993274 CATGCTGGGC
Statistics
Matches: 3653, Mismatches: 417, Indels: 152
0.87 0.10 0.04
Matches are distributed among these distances:
863 3 0.00
864 61 0.02
865 414 0.11
866 153 0.04
867 36 0.01
870 2 0.00
872 2 0.00
873 1 0.00
875 5 0.00
876 1 0.00
877 1 0.00
878 88 0.02
879 1 0.00
881 2 0.00
884 2 0.00
887 1 0.00
889 1 0.00
890 89 0.02
891 1 0.00
892 1 0.00
893 4 0.00
895 1 0.00
896 2 0.00
897 219 0.06
898 14 0.00
899 562 0.15
900 149 0.04
901 334 0.09
902 985 0.27
903 476 0.13
904 42 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
TCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGCCGACTGAGCA
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGGCGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCG
Found at i:12990742 original size:26 final size:26
Alignment explanation
Indices: 12990706--12990758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12990696 GTTGACTTAG
* *
12990706 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12990732 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12990758 G
1 G
12990759 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12993885 original size:718 final size:717
Alignment explanation
Indices: 12992500--12993989 Score: 2239
Period size: 718 Copynumber: 2.1 Consensus size: 717
12992490 CCCAATCTAA
* * * **
12992500 GCATATGGAATTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTACAACAGCACATGCTGGG
1 GCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
*
12992565 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGA
* * * * * * * * * * *
12992630 ACCTGACCGGTGGCATTTGGGTTTCGGCGATCGGGGGGGCTGAGGGGTGTGCGCACATGTTGTGT
130 ACCTAACCAGCGACATTAGGGTTCCGACGATCGGGGGGACCGAGGGGTGTGCGCACATGATGTGC
* * *
12992695 GATGGGTGCTGGTAATTGGCCCTTATATTGGCCCTCTGTCCGTCATCAAACTTCAAGAACTCACA
195 GATGGGTGCTGGTAATTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACA
* *
12992760 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCTTTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAATG
* *
12992825 GGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACATTTTTTGT
* *
12992890 GCATGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
** ** * *
12992955 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCAAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
* *
12993020 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGAT
520 CCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12993085 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCACATAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATAGATCCACGGCTTACGC
** ** * *
12993150 AACCTGTCTCTCTGGCCGACGTAGTGTCCGCCCGCCGGCCCGCCCGCTCGTTTCGTCGGTTGGCT
650 AACCCATCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
12993215 TAG
715 TAG
* * * *
12993218 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12993283 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGA
*
12993348 ACCTAACCAGCGACATTAGGGTTCCGACGATCGGGGGGACCGGGGGGCTGTGCGCACATGATGTG
130 ACCTAACCAGCGACATTAGGGTTCCGACGATCGGGGGGACCGAGGGG-TGTGCGCACATGATGTG
*
12993413 CGATGGGTGCTGGTAATTGGCCCTTATATTGGGCCC-CTATCCCTCATCAAACCTCGAGAACTCA
194 CGATGGGTGCTGGTAATTGGCCCTTATATT-GGCCCTCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
12993477 GACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAA
*
12993542 TGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGACATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACATTTTTT
** ** * * *
12993607 GTGCATGCCAAAAAAAATACAAGGATCATGTCTGCCAATTTTGGGTCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAA
*
12993672 AA-TTTAAAAAATCCCAAACTACAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
453 AATTTTAAAAAATCCCAAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
*
12993736 TGCCGTGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12993801 ATTGGCACGTAGAAATATGATGATGTGCATAAACCCACCTACCACCTTATAGATCCACGGCTTAC
583 ATTGGCACATAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATAGATCCACGGCTTAC
* *
12993866 G-AATCCCATCTTTCTGGCCGACGTAGTACCCGCTCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
648 GCAA-CCCATCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
12993930 GCTTAG
712 GCTTAG
* *
12993936 GCATACAGAATTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGCAG
1 GCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAG
12993990 TAAGATCTGC
Statistics
Matches: 689, Mismatches: 79, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
717 3 0.00
718 433 0.63
719 248 0.36
720 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGAA
CCTAACCAGCGACATTAGGGTTCCGACGATCGGGGGGACCGAGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTAATTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACATTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCAAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
CATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACATAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATAGATCCACGGCTTACGCA
ACCCATCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
AG
Found at i:12996197 original size:733 final size:716
Alignment explanation
Indices: 12994121--12996334 Score: 3068
Period size: 717 Copynumber: 3.1 Consensus size: 716
12994111 CCCAGTCTAA
* * * * *
12994121 GCATACGGAGTTCATTCCCAGTCCAAAATCAGACCTGACCGAGGGTTGCGGCAGCATATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT-GG
** * * * *
12994186 CTTTGACATGTGCTGGTGTTGCATTTTTCTTCATGGGGGCACCA---T-----CA-CCGGAGAAC
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGGAGAAC
* * * *
12994242 ATGACCGACGGCATTGGGGTT-TCGACAATCGGGGGGCCA--GGGGGTGTGCGCAAATGATGTGC
130 CTGACCGGCGGCATTGGGGTTCT-GACGATCGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGC
12994304 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12994369 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCTCTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATG
* * *
12994434 GGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * *
12994499 GCATGCCAAAAAAAATACAAGGATCATGTCCACCAGGTTTGGGGACAAAACTCCTTCCAAAAAAA
389 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACT-CTTCCGAAAAAA
* * * * *
12994564 TTTAAAAAAATCCCGAACCGTAAAAAATTTTG-AAAATCGTGAAAAATAAAAAATGAGTCGTCCT
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12994628 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA-TGCA
* * * *
12994693 TTGGCATGCAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACGTAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12994758 CATCCCGTCTCTCTGGCCGGCATAATGCCCACCCGCCC-GTCCGCACGCTTGTTTCGTCGGTTGG
647 CATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCTGCCCGCCCGCTCGTTTCGTCGGTTGG
12994822 CTTAG
712 CTTAG
* * * * *
12994827 GCAGACGGAGTTCATTCCTATTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGC
* * **
12994892 TCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCCCAAAGAA
66 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT--CCGGAGAA
* * ** *
12994957 CCTGACCAGCGGCATTGGGGTTCCGACGATCAGAAGGGCC-GGGGGGGTGTGCGCACATGATATG
129 CCTGACCGGCGGCATTGGGGTTCTGACGATC-GGGGGGCCAGGGGGGGTGTGCGCACATGATGTG
* *
12995021 CGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12995086 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
* * * * *
12995151 GGGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTAGAGTTTTTAGTTG-ATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* *
12995215 TGCATGCCAAAAAAAATACAAGGATCACGTCTA-CATAGTTTGGGGCCAAAACGTCTTCCGAAAA
388 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCA-AGTTTGGGGACAAAAC-TCTTCCGAAAA
* * *
12995279 AATTTTAAAAAATCCCAAACCATAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12995343 TTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAATTGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT-G
12995408 CATTGGCACGTAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCACGTAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
12995473 CGCATCCCGTCTATCTGGTCGGCGTAGTGCCCGCCCGCCCACCTGCCCACCCGCCCGCTCGTTTC
645 CGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCG--C-CCTG----CCCGCCCGCTCGTTTC
12995538 GTCGGTTGGCTTAG
703 GTCGGTTGGCTTAG
* *
12995552 GCATACGGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT-GG
* *
12995617 CTCGGGCATTTGCTGGTGCTGCATTGTTCTTCGTCGGGGCACCATCGTCGGAGCATCGGCGGAGA
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC--CGGAGA
*
12995682 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGGGGGGTGGTTTGCGCACATGA
128 ACCTGACCGGCGGCATTGGGGTTCTGACGATC-GGGGGGCCAGGGGGGGT-G--TGCGCACATGA
* * *
12995747 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCACCAAAGCTCGAGAAC
189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
12995812 TTACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAG-CTATTAAAGTGTCT
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCT-TTAAAGTGTCT
* * * *
12995876 GAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTGGCTGAATTG
318 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** *
12995941 TTTTATGCATCCCAGCACAAATACAAGGATCATGTCTACCCAAGTTTGGGTG-CAAAACTCATTC
383 TTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTA-CCAAGTTTGGG-GACAAAACTC-TTC
** *
12996005 CGAAAAAATTTTAAAAAATGTCGAACCGCAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGA
445 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGA
* *
12996070 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTGAAAGGACCATTGTATGAATTTACAAGCCATAA
510 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAA
*
12996135 AAATGCCATTGGCACATAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
575 AAATG-CATTGGCACGTAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
12996200 GGCTTGTGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCAG-CCTGCCTGCCGGCTCGTTTTG
639 GGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCTGCCCGCCCGCTCGTTTCG
12996264 TCGGTTGGCTTAG
704 TCGGTTGGCTTAG
* * * * *
12996277 GTATACGGAGTTTATTCCCAATCTAAGATCGGATC-GAACCGAGGGTTACGGCAGCACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACA
12996335 CAGATGGGGA
Statistics
Matches: 1330, Mismatches: 135, Indels: 67
0.87 0.09 0.04
Matches are distributed among these distances:
705 38 0.03
706 53 0.04
713 2 0.00
716 37 0.03
717 274 0.21
718 195 0.15
719 1 0.00
720 2 0.00
721 1 0.00
724 2 0.00
725 159 0.12
726 92 0.07
727 8 0.01
728 1 0.00
729 6 0.00
730 181 0.14
731 37 0.03
732 48 0.04
733 193 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGC
TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGGAGAACC
TGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGCATTGG
CACGTAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
G
Found at i:12996454 original size:26 final size:26
Alignment explanation
Indices: 12996420--12996492 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
12996410 ATGAGTTGAC
12996420 TTAGGCATACGGAGTTCATTCCCAGT
1 TTAGGCATACGGAGTTCATTCCCAGT
* *
12996446 TTATGCATACGAAGTTCATTCCCAGT
1 TTAGGCATACGGAGTTCATTCCCAGT
*
12996472 TTAGGCATACAGAGTTCATTC
1 TTAGGCATACGGAGTTCATTC
12996493 TAGTCTAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (26 bp):
TTAGGCATACGGAGTTCATTCCCAGT
Found at i:12998089 original size:26 final size:26
Alignment explanation
Indices: 12998060--12998112 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12998050 GTTGAATTAG
12998060 GCATACGGAATTAATTCCCAGCCTAA
1 GCATACGGAATTAATTCCCAGCCTAA
* * * *
12998086 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTAATTCCCAGCCTAA
12998112 G
1 G
12998113 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTAATTCCCAGCCTAA
Found at i:12998971 original size:26 final size:26
Alignment explanation
Indices: 12998933--12998983 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12998923 TGACTTAGGG
*
12998933 ATACAGAGATCATTCCCAGTCTAAGC
1 ATACAAAGATCATTCCCAGTCTAAGC
*
12998959 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGATCATTCCCAGTCTAAG
12998984 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.25
Consensus pattern (26 bp):
ATACAAAGATCATTCCCAGTCTAAGC
Found at i:12999505 original size:884 final size:886
Alignment explanation
Indices: 12997189--12999625 Score: 3441
Period size: 884 Copynumber: 2.7 Consensus size: 886
12997179 AGGCATACGG
* * * * * *
12997189 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCACATTCTGGACTTAGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
* * * * * *
12997254 TGTGCTGGCG-TCGTATTTTTTTTCGTCG-GGCCACCAACGCTGGAGCATTGCCGGAGAACTTGA
66 TGTGCTGGTGCT-GCATTTTTCTTCGTCGAGG-CACCAACGCCGGAGCATCGCCGGAGAACATGA
* * * *
12997317 CTGGCAGCATCGGGGTTCCAGCGATCGGGCGGGCCGAGGGGG-GTGTGCACAAATGATGTGCGAT
129 CCGGCGGCATTGGGGTTCCAACGATCGGG-GGGCCGAGGGGGTGTGTGCAC--ATGATGTGCGAT
* * * *
12997381 GGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATGCCTCATTAAACCTCGAGAACTCACACCC
191 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* * *
12997446 CCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAATTGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGG
* *
12997511 AAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCA
320 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTCTTTTGTGCA
* * * * * *
12997576 TGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTGCCGAAAAAATTT
385 T-CCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * *
12997641 TAAAAAATCCCAAACC-TCAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
449 TAAAAAATGTCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
12997705 ATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
513 ATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** *
12997770 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTAGCGCAT
578 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
12997835 CCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTA
643 CCCGTCTCTC-GGCC-ACG-A------------CCGCACGCCCGCTCGTTTCGTCGGTTGGCTTA
* * **
12997900 GGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAACGGCAATAGGATCGGC
693 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAACGGCAACAGGATCACC
* ** * *
12997965 AGCATGCAGAGGGGGACCCAACCAATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAGTTGAGCG
758 AACACACAGAGGGGGACCCAACCAATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCA
* * ***
12998030 CCCGTACGCTCATTTCGTGGGTTGAATTAGGCATACGGAATTAATTCCCAGCCTAAGCATATGG
823 CCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACAGAATTAATTCCCAGCCTAAGCATACAA
* * * * *
12998094 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGGAGCATATGCTAGGCTCCGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
* * * *
12998159 TGGGCTGGTGCCGCATTTTTCTTCGTGGAGG---C-A---C----CATCGTCGGAGAACATGACC
66 TGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCAACGCCGGAGCATCGCCGGAGAACATGACC
* * * * * *
12998213 AGCGACATTGGGGTTCCGACGATCGGGGGGTCGAAGGGGGGTGTGCGCACATGATGTGCGATAGG
131 GGCGGCATTGGGGTTCCAACGATCGGGGGGCCG-A-GGGGGTGTGTGCACATGATGTGCGATGGG
*
12998278 TGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
12998342 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGACAC
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACAC
* *
12998407 TTTTTTCAAATGGTCACAAAATCTTGGACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTCTTTTGTGCAT-CC
*
12998472 AAAAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
388 AACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
12998537 AAATGTCGAACCGTAAAAAGTTTTGAAAATCGTCAAAAATAGAAAATGAGTCGTCTTGCCATGAA
453 AAATGTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
12998602 ACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
518 ACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
12998667 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
12998732 CTCTC-GCC-C-A-C-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
648 CTCTCGGCCACGACCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
* *
12998791 AGTCTAAGATC-GAACCGGACCGAGGGCT-ACGGTAGCAGGATCACCAACACACAGAGGGGGACC
713 AGTCTAAGATCAG-ACCGGACCGAGGG-TAACGGCAACAGGATCACCAACACACAGAGGGGGACC
* * * * * * *
12998854 CGATCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCC-GACTGAGCACCCGCACGCTCGTTTCG
776 CAACCAATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAG-CTGAGCACCCGCACGCTCATTTCG
* * * *
12998918 TGGGTTGACTTAGGGATACAGAGA-TCATTCCCAGTCTAAGCATACAA
840 TGGGTTGAATTAGGCATACAGA-ATTAATTCCCAGCCTAAGCATACAA
* * *
12998965 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTACCACATGCTGGGCTCAGGTA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
*
12999030 TGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCAACGCCGGAGCATCGCCGGAGAACCTGACC
66 TGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCAACGCCGGAGCATCGCCGGAGAACATGACC
* * *
12999095 GGCGGCATTGGGGTTTCAACGATCTGGGGGGCCGAGGGGGATGTGTGCACATGCTGTCCGATGGG
131 GGCGGCATTGGGGTTCCAACGATC-GGGGGGCCGAGGGGG-TGTGTGCACATGATGTGCGATGGG
*
12999160 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
12999225 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCTACT
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GACA
*
12999290 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTGTTTTGTGCATCT
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTCTTTTGTGCATC-
12999355 CAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
387 CAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
12999420 AAAATGTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
452 AAAATGTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
12999485 AACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
517 AACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
12999550 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
582 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
12999615 TCTCTCTGGCC
647 TCTCTC-GGCC
12999626 GGCATAGTGC
Statistics
Matches: 1378, Mismatches: 126, Indels: 75
0.87 0.08 0.05
Matches are distributed among these distances:
870 2 0.00
871 272 0.20
872 3 0.00
873 1 0.00
874 1 0.00
875 1 0.00
878 1 0.00
881 5 0.00
882 84 0.06
883 104 0.08
884 324 0.24
886 4 0.00
888 1 0.00
890 3 0.00
892 311 0.23
893 93 0.07
894 77 0.06
895 5 0.00
896 7 0.01
901 1 0.00
902 1 0.00
905 75 0.05
906 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
TGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCAACGCCGGAGCATCGCCGGAGAACATGACC
GGCGGCATTGGGGTTCCAACGATCGGGGGGCCGAGGGGGTGTGTGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTCTTTTGTGCATCCAAC
AAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TGTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCGGCCACGACCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGT
CTAAGATCAGACCGGACCGAGGGTAACGGCAACAGGATCACCAACACACAGAGGGGGACCCAACC
AATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCACCCGCACGCTCATTTCGTGGGTT
GAATTAGGCATACAGAATTAATTCCCAGCCTAAGCATACAA
Found at i:13000348 original size:4 final size:4
Alignment explanation
Indices: 13000339--13000373 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
13000329 TCCCGTCTCT
13000339 CGCC CGCC CGCC CGCC CGCC CGCC CGCC CGCC CGC
1 CGCC CGCC CGCC CGCC CGCC CGCC CGCC CGCC CGC
13000374 TCGTTTCGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.00, C:0.74, G:0.26, T:0.00
Consensus pattern (4 bp):
CGCC
Found at i:13000594 original size:26 final size:26
Alignment explanation
Indices: 13000556--13000606 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13000546 TGACTTAGGG
*
13000556 ATACAGAGATCATTCCCAGTCTAAGC
1 ATACAAAGATCATTCCCAGTCTAAGC
*
13000582 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGATCATTCCCAGTCTAAG
13000607 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.25
Consensus pattern (26 bp):
ATACAAAGATCATTCCCAGTCTAAGC
Found at i:13002044 original size:26 final size:26
Alignment explanation
Indices: 13002008--13002057 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13001998 GACTTAGGCA
13002008 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
13002034 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13002058 ATCGAACGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:13002730 original size:741 final size:742
Alignment explanation
Indices: 13001292--13002772 Score: 2078
Period size: 741 Copynumber: 2.0 Consensus size: 742
13001282 GGCTTACGCA
* * *
13001292 TACGGAGTTCATTCCCAATCTACGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * *
13001357 GGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCCTCGGTGCATCGCCAGAGAACC
66 GAGCATCTGCTGGTGCCACATCTTTCTTCATCGGGGCACCATCCTCAGAGCATCGCCAGAGAACC
* ** * * *
13001422 TGTCCGGCGGCATTGGGGTTTCGGAGATCGGGGGGGCCGAGGGGGGGTGTGCCCACATGATGTGC
131 TGTCCGACGAAATTGGGGTTCCGGAGATCGGGGGGACCGAGGGGGGGTGTGCCCAAATGATGTGC
* * * *
13001487 GATGGGTGCTGGTACATGGCCCTTGTATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGCACATGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13001552 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGAAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCGGAAATG
13001617 GGGACACTTTTTTCAAATGGTCACAAAAATCTTATACCACTTAGAGTTTTAGCTGAATTTCTTTT
326 GGGACACTTTTTTCAAATGGTCACAAAAATCTTATACCACTTAGAGTTTTAGCTGAATTTCTTTT
*
13001682 GTGGCATCGCCAACAAAAAATGGCAAGGATCACATCTACCCAAGTTGGGGCCAAACTCCTTCCAA
391 GTGGCATCGCCAACAAAAAATGACAAGGATCACATCTACCCAAGTTGGGGCCAAACTCCTTCCAA
*
13001747 AAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACAAGTCGTC
456 AAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACAAGTCGTC
13001812 TTGCCCATGAAACTTCACGTGAAAGCTTAAGGGACAATTGTATGAATTTACAAAGCCCATAAAAA
521 TTGCCCATGAAACTTCACGTGAAAGCTTAAGGGACAATTGTATGAATTTACAAAGCCCATAAAAA
*
13001877 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGG
586 ATGGCATTGGCACACAGAAATATGAAGATGTGACTAAACCCACCGACCACCCTATCGATCCACGG
* * * * *
13001942 CTTGCTCATCCCGCCCCTCTGGCCTACTGAACGTCCGCACGCTCGTTTTGTGGGTTGACTTAGGC
651 CTTGCGCATCCCGCCCCTCCGGCCTACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACATAGGC
* *
13002007 ATACGGAGTTCATTCCCAGTCTAAGCG
716 ATACGGAGCTCATTCCCAATCTAAGCG
* ** * *
13002034 TACGGAGTTCATTCCCAGTCTAAGATCGAACGGGACCGAGTGTTGCGGCAGCACATGCTGGGTTC
1 TACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
13002099 GAGCATCTGCTGGTGGCACATCTTTCTTCATCGGGGCACCATCGC-CAGAGCATCGTCGGAGAAC
66 GAGCATCTGCTGGTGCCACATCTTTCTTCATCGGGGCACCATC-CTCAGAGCATCGCCAGAGAAC
* * * *
13002163 CTGTCCGACGAAATTGGGGTTCCGGCGATCGGGGGGATCG-GGGGTGGTGTGCGCAAATGATGTG
130 CTGTCCGACGAAATTGGGGTTCCGGAGATCGGGGGGACCGAGGGGGGGTGTGCCCAAATGATGTG
*
13002227 CGATGGGTGCTGGCACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGCACATGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** *
13002292 ACCCCCTTAAAGAGCATTTGAGATTTTATGGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCGGAAAT
*** * *
13002357 GGGGACACTTTTTTCAAATGGT-TGTAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAA-TT-TT
325 GGGGACACTTTTTTCAAATGGTCACAAAAATCTTATACCACTTAGAG-TTTTAGCTGAATTTCTT
13002418 TTGT-GCAT-GCCAAC-AAAAAT-ACAAGGATCACATCTA-CCAAGTTTGGGGCCAAAACTCCTT
389 TTGTGGCATCGCCAACAAAAAATGACAAGGATCACATCTACCCAAG-TTGGGGCC-AAACTCCTT
* *
13002478 CCAAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACG
452 CCAAAAAAA-TTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAG-AAACA
* *
13002542 AGTCGTCTTG-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAG-CC
514 AGTCGTCTTGCCCATGAAACTTCACGTGAAAGCTTAAGGGACAATTGTATGAATTTACAAAGCCC
* * * * *
13002604 AT-AAAAATGGCATTGGCACATATAAGTATGAAGATGTGATTAAACCCACCTACCACCCTATCGA
579 ATAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGACTAAACCCACCGACCACCCTATCGA
* ** *
13002668 TCCACGGCTTGCGCATCCCGTCTCCCTGGCCGGCGTAGC-GCCCGCCCGCCCGCCCACTCGTTTC
644 TCCACGGCTTGCGCATCCCG-C-CCCT--CCGGCCTA-CTGAACGCCCGCACG----CTCGTTTC
* * *
13002732 GTTGGTTGGCATAGGCATTCGGAGCTCATTCCCAATCTAAG
700 GTGGGTTGACATAGGCATACGGAGCTCATTCCCAATCTAAG
13002773 ATCAGACCGG
Statistics
Matches: 654, Mismatches: 69, Indels: 33
0.87 0.09 0.04
Matches are distributed among these distances:
733 80 0.12
734 28 0.04
735 36 0.06
736 91 0.14
737 33 0.05
738 7 0.01
739 10 0.02
740 21 0.03
741 205 0.31
742 142 0.22
743 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (742 bp):
TACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
GAGCATCTGCTGGTGCCACATCTTTCTTCATCGGGGCACCATCCTCAGAGCATCGCCAGAGAACC
TGTCCGACGAAATTGGGGTTCCGGAGATCGGGGGGACCGAGGGGGGGTGTGCCCAAATGATGTGC
GATGGGTGCTGGCACATGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCGGAAATG
GGGACACTTTTTTCAAATGGTCACAAAAATCTTATACCACTTAGAGTTTTAGCTGAATTTCTTTT
GTGGCATCGCCAACAAAAAATGACAAGGATCACATCTACCCAAGTTGGGGCCAAACTCCTTCCAA
AAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACAAGTCGTC
TTGCCCATGAAACTTCACGTGAAAGCTTAAGGGACAATTGTATGAATTTACAAAGCCCATAAAAA
ATGGCATTGGCACACAGAAATATGAAGATGTGACTAAACCCACCGACCACCCTATCGATCCACGG
CTTGCGCATCCCGCCCCTCCGGCCTACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACATAGGC
ATACGGAGCTCATTCCCAATCTAAGCG
Found at i:13002942 original size:26 final size:26
Alignment explanation
Indices: 13002906--13002955 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13002896 TTGACTTAGG
13002906 CATACGGAGTTCATTCCCAATCTAAT
1 CATACGGAGTTCATTCCCAATCTAAT
*
13002932 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAATCTA
13002956 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAT
Found at i:13004301 original size:16 final size:16
Alignment explanation
Indices: 13004263--13004302 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
13004253 CTGGTGTAGT
*
13004263 GCCCGCCCGTCCGCCC
1 GCCCGCTCGTCCGCCC
13004279 GCCCGCTCGTCCGCCC
1 GCCCGCTCGTCCGCCC
13004295 GCCCGCTC
1 GCCCGCTC
13004303 AATTCGTCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.00, C:0.65, G:0.25, T:0.10
Consensus pattern (16 bp):
GCCCGCTCGTCCGCCC
Found at i:13004510 original size:26 final size:26
Alignment explanation
Indices: 13004481--13004533 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13004471 GTTGACTTAG
*
13004481 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
13004507 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
13004533 G
1 G
13004534 ATTGGGCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:13005949 original size:26 final size:26
Alignment explanation
Indices: 13005899--13005951 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13005889 GTTGGCTTAG
*
13005899 GCATACGGAGTTCATTCTCGATCTAA
1 GCATACGGAGTTCATTCTCCATCTAA
13005925 GCATACGGAGTTCATTC-CCATTCTAA
1 GCATACGGAGTTCATTCTCCA-TCTAA
13005951 G
1 G
13005952 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCCATCTAA
Found at i:13006306 original size:721 final size:729
Alignment explanation
Indices: 13004640--13006641 Score: 2574
Period size: 722 Copynumber: 2.8 Consensus size: 729
13004630 CGGCGGGCCG
* * * * ** *
13004640 GGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAACTGTCC
1 GGGGGGTGTGCACACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
13004705 CTCATCAAACCTCGAGAACACACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCC
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAA-ATGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
13004769 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTT
130 AGTAGCAATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTAAACTT
* * * * * *
13004834 CGAGTTTTTAGCTG-ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTA-TACTAATT
195 CGAGTTTTTAGCTGAATTT-TTTTATGCATGCCAAAAAAAATACAAGGATAACG-ACTACCAAGT
* * * *
13004897 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
258 TTGGGGCCAAAACTCC-TTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* ** *
13004962 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGGAGGCTTAAAGGACCATTGT
322 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGT
* * *
13005027 ATGAATTTACAAGCCA-AAAAATGGCATTGGCA-CACAAAAATATGAAGATGTGCCTAAACCCAC
387 ATGAATTTACAAGCCAGAAAAATAGCATTGGCATGA-AAAAATATGAAGATATGCCTAAACCCAC
* * * * * *
13005090 CTACCACCCTACCGATTCACGGCTTGCCCATCCCATCTCTCTGGCCAGCATAGTGCCCGCCCGCC
451 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGCGCCCGCCCGCC
* * *
13005155 CG-CC-CAC-C--TGC-TCG-TT-TCTT---CAGT--TG-G--C--T-T---T-T--GCATACGG
516 CGCCCGCACGCTATTCGTCGATTGGCTTACGCA-TACGGAGTTCATTCTCGATCTAAGCATACGG
* *
13005195 AGTTCATTCCCAGTCTAAGATCGAACCAGTTCAAGGGTTGTGGCAGCACAAGCTGGGCTCGGGCA
580 AGTTCATTCCCAGTCTAAGATCGAACCAGTTCAAGGGTTGCGGCAGAACAAGCTGGGCTCGGGCA
* *
13005260 TGTGCTGGTGCCGTATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
645 TGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
** *
13005325 GATGACATTGGGGTTCCGACGATCGGGGGGCC
710 GACAACATTAGGGTT----C--T------GCC
** *
13005357 GGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCACACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
13005422 CTCATCAAACGTCGAGAACTCACACCCCTTTAAAATGCATTTGGGATTTTGCAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAATGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * * *
13005487 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTAGAAAATCTTGTACACTTC
131 GTAGCAATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTAAACTTC
*
13005552 GAGTTTTTAGCTGAATTTTTTTATGCGTGCCAAAAAAAATACAAGGATAACGACTACCAAGTTT-
196 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATAACGACTACCAAGTTTG
* ** * *
13005616 GGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCGAAAATCATG
261 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
*
13005681 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGA
* * * * *
13005746 ATTTACAAGCCATAATAATGGCATTGGCATGAAAAAATATGCAGATGTGCCTAAACCCACCTACC
391 ATTTACAAGCCAGAAAAATAGCATTGGCATGAAAAAATATGAAGATATGCCTAAACCCACCTACC
13005811 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGCGCCCGCCCGCCCGCCC
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGCGCCCGCCCGCCCGCCC
* *
13005876 GCACG-T-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCGATCTAAGCATACGGAGTTCA
521 GCACGCTATTCGTCGATTGGCTTACGCATACGGAGTTCATTCTCGATCTAAGCATACGGAGTTCA
* * ** * *
13005939 TTCCCATTCTAAGATCGGACTGGATT-GAGGGTTGCGGCAGAACATGCTGGGCTCGGGCATGTGC
586 TTCCCAGTCTAAGATCGAACCAG-TTCAAGGGTTGCGGCAGAACAAGCTGGGCTCGGGCATGTGC
* *
13006003 TGGTGCTGCATTTTTCTTCATCG-GGTCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACA
650 TGGTGCCGCATTTTTCTTCACCGAGG-CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACA
13006067 ACATTAGGG-T-T-CC
714 ACATTAGGGTTCTGCC
*
13006080 GGGGGG-GTGCACACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTA-CC
1 GGGGGGTGTGCACACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
13006143 CTCATCAAACCTCGAGAATTCACACCCCCTTAAAGA-GCATTTGAGATTTTATAGGTTTGTTGCC
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAA-ATGCATTTGAGATTTTACAGGTTTGCTGCC
*
13006207 AGTAGCAATTAAAGCGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTAAACTT
130 AGTAGCAATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTAAACTT
* * *
13006272 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATAACGACTACCAAGTTT
* *
13006337 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
260 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * * *
13006402 GAAAAATAGAAAACGGGTCGTCTTGTCATGAAACTTCATGTAAAGGCTTAAGGGACCATTGTATG
325 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATG
* *
13006467 AATTTACAAGCCAGAAAAATAGCATTGGCATGTAGAAATATGAAGATATGCCTAAACCCACCTAC
390 AATTTACAAGCCAGAAAAATAGCATTGGCATGAAAAAATATGAAGATATGCCTAAACCCACCTAC
* ** * *
13006532 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGTGTAGTGCCCGCCCGCCCGCC
455 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGCGCCCGCCCGCCCGCC
* *
13006597 CGCCCGCTCAATTCGTCGATTGGCTTACTCATACGGAGTTCATTC
520 CGCACGCT--ATTCGTCGATTGGCTTACGCATACGGAGTTCATTC
13006642 CCAGTATAAG
Statistics
Matches: 1139, Mismatches: 109, Indels: 65
0.87 0.08 0.05
Matches are distributed among these distances:
715 119 0.10
716 117 0.10
717 232 0.20
718 7 0.01
719 2 0.00
720 3 0.00
721 178 0.16
722 295 0.26
723 9 0.01
724 1 0.00
725 2 0.00
726 32 0.03
727 1 0.00
729 1 0.00
730 1 0.00
731 1 0.00
732 1 0.00
735 1 0.00
736 1 0.00
737 3 0.00
738 130 0.11
739 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (729 bp):
GGGGGGTGTGCACACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAATGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCAATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTAAACTTC
GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATAACGACTACCAAGTTTG
GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCAGAAAAATAGCATTGGCATGAAAAAATATGAAGATATGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGCGCCCGCCCGCCCGCCC
GCACGCTATTCGTCGATTGGCTTACGCATACGGAGTTCATTCTCGATCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGAACCAGTTCAAGGGTTGCGGCAGAACAAGCTGGGCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACAAC
ATTAGGGTTCTGCC
Found at i:13008253 original size:26 final size:26
Alignment explanation
Indices: 13008203--13008255 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13008193 GTTGGCTTAG
* *
13008203 GCATACGGAGTTCATTCTCGATCTAA
1 GCATACAGAGTTCATTCTCCATCTAA
13008229 GCATACAGAGTTCATTC-CCATTCTAA
1 GCATACAGAGTTCATTCTCCA-TCTAA
13008255 G
1 G
13008256 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCCATCTAA
Found at i:13009132 original size:26 final size:26
Alignment explanation
Indices: 13009096--13009148 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13009086 GTTGACTTAG
*
13009096 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13009122 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13009148 G
1 G
13009149 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13009569 original size:893 final size:894
Alignment explanation
Indices: 13008171--13011625 Score: 4384
Period size: 893 Copynumber: 3.9 Consensus size: 894
13008161 AGTACCCGCC
* * * * *
13008171 CGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTC-GATCTAAGCATAC
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCATAC
* * * * *
13008235 AGAGTTCATTCCCATTCTAAGATCGGACTAGACTGAGGGTTGCAGCAGCACATGCTGGGCTCAGG
65 AGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* ** * * *
13008300 CATGTGCTGGTGCTGCATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCACCGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGTCACCATCGCCGGAGCATCATCGGAGAACTTGA
* * * *
13008365 CCGACAGCATTGGGGTTCCGGTGATCGGGGGTTCCGGGGGGGGTGCACACATGATGTGCGATGGG
195 CCGGCGGCATTGGGGTTCCGGTGATCGGGGG-GCCGGGGGGTGTGCACACATGATGTGCGATGGG
* *
13008430 TGCTGGTACTTGGCCCTTATATTGGCCCCCTA-CCCTCATCAAACCTCAAGAA-TTCACACCCCC
259 TGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAA-AACATCACACCCCC
* *
13008493 TTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGAC
323 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
13008558 ACTTTTTTCGAATGGTCACAAAATATTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
388 ACTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
13008623 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTT
453 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCAAAAAAA-TTT
* * *
13008687 AAAAAATCCCGATCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
516 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
13008752 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
581 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * **
13008817 AAGTATAAGTATGAAGATGTGATTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
646 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * * * *
13008882 CGTCTCCCTGGCTGACGTA-G-CGCCCGCCCACCCACTTGTTTCGTCGGTTGGCATAGGCATTCG
711 CATCTCTCTGGCCGACATAGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * *
13008945 GAGCTCATTCCCAATCTAAGATTAGTCCGAATCGAGGGATGCGGTACCAGGATCGGTACCACGTA
776 GAGCTCATTCCCAGTCTAAGATTAG-CCGAACCGAGGGTTGCGGTAGCAGGATCGGTAACACGTA
* ** * * *
13009010 GAGGGGGACCCCATCGATCGTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAG
840 GAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
13009065 CG-TCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
13009129 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * ** *
13009194 ATGTGCTGGTGCCGTATTTTTCTTCGCCAGGTAACCATCGCCTAAGCATCTTCGGAGAACTTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGTCACCATCGCCGGAGCATCATCGGAGAACTTGAC
* **
13009259 CGGCGGCATTGGGGTTCCAGTGATCGGGGGGCCGGGGGGTGTGCTTACATGATGTGCGATGGGTG
196 CGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTG
*
13009324 TTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAAAACAT-ACACCCCCTT
261 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTC-AAAACATCACACCCCCTT
* *
13009388 AAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
325 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
13009453 TTATTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
390 TTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
13009518 AACAAAAATACAAGGACCACGTGTACCAAGTTTGGGGCCAAAAACCCTTCCAAAAAAATTTTAAA
455 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCAAAAAAA-TTTAAA
* * * * *
13009583 AAATCCCAAACTGCAAAAAGTATCAAAAATTATGGAAAATAGAAAACAAGTCGTCTTGCCATGAA
519 AAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
13009648 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
584 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
13009713 TAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACAGCTTGCGTATCCCAT
649 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* * * * *
13009778 CTCTCTAGCCGACGTAGTGCCCGTCTGCCGGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCGT
714 CTCTCTGGCCGACATAG-G-CCG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
13009843 TCAGAGCTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGTAGTAGGATCGGTAACAC
773 ACGGAGCTCATTCCCAGTCTAAGATTAGCCGA-ACCGAGGGTTGCGGTAGCAGGATCGGTAACAC
** * * * *
13009908 ACAGAGGGGGACCCGATCGATCCCCAGCTTGCACAACCCGCCCCTCTGGCTGGTTGAG
837 GTAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * **
13009966 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* **
13010031 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
13010096 ATGTGCTGGTGTCGTATTTTTCTTCGCCTGGTCACCATCGCCTGAGCATCATCGGAGAA-TCTGA
131 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGTCACCATCGCCGGAGCATCATCGGAGAACT-TGA
* * *
13010160 CTGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCACACATG-TGT-CG-TGTG
195 CCGGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATG-G
* * * * *
13010222 GTGTATGGTACTTGG--CTTATATT--CCTCCTCT-ACTCATCGCAACCTCAGAACA-CACACGC
258 GTG-CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATC-AAACCTCAAAACATCACAC-C
*
13010281 CCCTTAAAGAGGCATTTGAGA-TTTAC-GG-TTGCT-ACAGTAGCCATTAAA-TGT-TG-AATGG
320 CCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
13010339 GG-CAACTTATTTCAAAT-G-CACAAAA--TTG-ACACTTCG-GTTTTTAGC---------TT-A
384 GGAC-ACTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ***
13010387 GC-TG--ACCAAAAA-AC-AGGA-CATGTCTACCAAG-TT-GGGCCAACAACCCTTTTGAAAAAA
448 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCAAAAAAA
* * * *
13010444 TTTAAAAAATCCCGAACCGTAAAAAAGTTT-AAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
513 TTTAAAAAATCCCAAACCG-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
13010508 CCATGAAACTTCACGTGAAGGCTT-AGGGACCATTGTATGAA-TTACAAGCCAT-AAAATGGCAT
577 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
13010570 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGC
642 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
13010635 ATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCCCGTCCCCCCGCTCGTTTCGTCGGTTAGCT
707 ATCCCATCTCTCTGGCCGACATAG-G-CCGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
13010700 TAGGCATACGGAGTTCATTCCCAGCCTAAGATTGGACTGAACCGAGGGTTGCGGCAGCAAGATAG
766 TAGGCATACGGAGCTCATTCCCAGTCTAAGATTAG-CCGAACCGAGGGTTGCGGTAGCAGGATCG
* * * * * * *
13010765 GTAGCACGTAGCGGGCGG-CCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTTTGGTCGACTGA
830 GTAACACGTAGAGGG-GGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
13010829 G
894 G
* * *
13010830 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATATA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * *
13010895 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * * **
13010960 ATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGAG-ACTTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGTCACCATCGCCGGAGCATCATCGGAGAACTTGAC
* * * * *
13011024 CGGCGGCATTGGGGTTCCGGTGATCGAGTGGGTCGGGGGGGTGTGCGCACATGATATGCGATGGC
196 CGGCGGCATTGGGGTTCCGGTGATCG-G-GGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
* * * *
13011089 TGCTGGTACTTGGCCCTTATTTTGGCC-CACTGTCCCTCATCAAACCTCGAGAAC-TCACAACCC
259 TGCTGGTACTTGGCCCTTATATTGGCCTC-CTATCCCTCATCAAACCTC-AAAACATCACACCCC
* **
13011152 CTTAAAGTGTGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
322 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
13011217 CAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTTGCTGAATTTTTTTATGCAT
387 CACTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
13011282 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCCAAAAAAATTTA
452 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCAAAAAAATTTA
* * *
13011347 AAAAATCCCAAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAGCGAGTCATCTTGCCATG
517 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
13011412 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
582 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
13011477 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGAACGATCCACGGCTTGTGCATCCT
647 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** * * *
13011542 ATCTCTCTGGCCGGCATA-G-TACCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACCG
712 ATCTCTCTGGCCGACATAGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
*
13011605 AGTTCATTCCCAGTCTAAGAT
777 AGCTCATTCCCAGTCTAAGAT
13011626 CAGATTGGAC
Statistics
Matches: 2229, Mismatches: 251, Indels: 162
0.84 0.10 0.06
Matches are distributed among these distances:
860 5 0.00
861 2 0.00
862 1 0.00
863 29 0.01
864 399 0.18
865 26 0.01
866 22 0.01
867 79 0.04
868 37 0.02
869 28 0.01
870 28 0.01
871 9 0.00
872 16 0.01
873 10 0.00
874 2 0.00
875 20 0.01
876 4 0.00
877 9 0.00
879 3 0.00
880 8 0.00
881 8 0.00
886 9 0.00
887 8 0.00
888 3 0.00
890 9 0.00
891 4 0.00
892 80 0.04
893 592 0.27
894 71 0.03
895 16 0.01
896 8 0.00
897 31 0.01
898 49 0.02
899 100 0.04
900 32 0.01
901 145 0.07
902 303 0.14
903 24 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGTCACCATCGCCGGAGCATCATCGGAGAACTTGAC
CGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAAACATCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCAAAAAAATTTAAAAA
ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
CTCTGGCCGACATAGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGCT
CATTCCCAGTCTAAGATTAGCCGAACCGAGGGTTGCGGTAGCAGGATCGGTAACACGTAGAGGGG
GACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:13010892 original size:26 final size:26
Alignment explanation
Indices: 13010862--13010911 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13010852 GTTGACTTAG
*
13010862 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACAGAGTTCATTCCCAGTCTGA
*
13010888 GCATATAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
13010912 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:13012346 original size:26 final size:26
Alignment explanation
Indices: 13012316--13012368 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13012306 GTTGACCTAG
13012316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13012342 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13012368 G
1 G
13012369 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13013248 original size:26 final size:26
Alignment explanation
Indices: 13013208--13013260 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13013198 GTTGACTTAG
* *
13013208 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
*
13013234 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
13013260 G
1 G
13013261 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:13013553 original size:730 final size:733
Alignment explanation
Indices: 13012665--13014000 Score: 1929
Period size: 737 Copynumber: 1.8 Consensus size: 733
13012655 TGTCTGAAAT
13012665 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTA
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTA
* * *
13012730 TGGATGCCAACAAAAATACAAGGACCACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAA
66 TGGATGCCAACAAAAATACAAGGACCACATCCACCAAATTTGGGACCAAAACTCCTACCAAAAAA
** * *
13012795 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGACAATTGTGAAAAATAGAAAACGAGTCGTCTT
131 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
13012860 GCCATGAAAC-TCACGTGAAGGCTTAAGGGGCCATTGTACGAATTTGCAATCC-TTAAAATGGCA
196 GCCATGAAACTTCACGTGAAGG---AAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
* * * * *
13012923 TTGTCATGTAGAAATATGAAGATGTGCCTAAACCCACATACCATCCTATCGATCCATGGCATACG
258 TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCATGGCATACG
* * *
13012988 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-C-GCCCG-CTCTTTTCGTCGGTTGGCTTAG
323 CATCCCGTCTCTCCGGCAGACGTAGTGCCCGCCCGCTGCCCGCCTCGTTTCGTCGGTTGGCTTAG
* * * * *
13013049 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGTAGGATCTG-T
388 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGCATC-GAC
* * *
13013113 AGCACATAAAGGGGGACCCGACT-GATCCCCGGCTTGTGCATACCGCCCCTCCGGCCGGCTGAAC
452 AGCACACAAAGGGGGACCCG-CTCGATCCCAGGCTTGCGCATACCGCCCCTCCGGCCGGCTGAAC
* *
13013177 GCCCACACGTTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTTCCAGTCTAAGCATACGG
516 GCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
13013242 AGCTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAACAGTACATGCTGGGCTCGGGCA
581 AGCTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAACAGTACATGCTGGGCTCGGGCA
13013307 TGTGCTAGTGTCGCATTTATCTTTGTCGGGGCACCATCACCGAAGAAGTTGACCGACGGCATTGG
646 TGTGCTAGTGTCGCATTTATCTTTGTCGGGGCACCATCACCGAAGAAGTTGACCGACGGCATTGG
13013372 GGTTCCGACGATCGGGGGGCTGG
711 GGTTCCGACGATCGGGGGGCTGG
* *
13013395 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTA
* ** * * *
13013460 TGCG-TGCCAA-AACAAATACAAGGATCATGTCCACCAAATTTGGGGCCAAACCTCCTACCCAAA
66 TG-GATGCCAACAA-AAATACAAGGACCACATCCACCAAATTTGGGACCAAAACTCCTACCAAAA
* * *
13013523 AAATTTTAACAAATC-CTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGT
129 AAATTTTAAAAAATCTC-AAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
13013587 CTTGCCATGAAACTTCATGTGAAGGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
193 CTTGCCATGAAACTTCACGTGAAGGAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
* * * * *
13013652 TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCGCCCTATCGATCTATGGCTTGCG
258 TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCATGGCATACG
*
13013717 CATCCCGTCTCTCCGGCAGGCGTAGTGCCCGCCCGTCTGCCCGCCCACTCGTTTCGTCGGTTGGC
323 CATCCCGTCTCTCCGGCAGACGTAGTGCCCGCCCG-CTGCCCG--C-CTCGTTTCGTCGGTTGGC
*
13013782 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGCATC
384 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGCATC
* * * * * * *
13013847 GACAGCACGCAGAGGGGGACTCGGTCGATCCCAGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGA
449 GACAGCACACAAAGGGGGACCCGCTCGATCCCAGGCTTGCGCATACCGCCCCTCCGGCCGGCTGA
* * * *
13013912 CCGCCCACATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
514 ACGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
* *
13013977 GGAGTTCATTTCCAGTCTAAGATC
579 GGAGCTCATTCCCAGTCTAAGATC
13014001 GGACCAGACT
Statistics
Matches: 529, Mismatches: 62, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
728 24 0.05
729 96 0.18
730 182 0.34
731 11 0.02
732 1 0.00
733 5 0.01
736 2 0.00
737 208 0.39
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (733 bp):
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTA
TGGATGCCAACAAAAATACAAGGACCACATCCACCAAATTTGGGACCAAAACTCCTACCAAAAAA
ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCATGGCATACGCAT
CCCGTCTCTCCGGCAGACGTAGTGCCCGCCCGCTGCCCGCCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGCATCGACAGCA
CACAAAGGGGGACCCGCTCGATCCCAGGCTTGCGCATACCGCCCCTCCGGCCGGCTGAACGCCCA
CACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGCTC
ATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAACAGTACATGCTGGGCTCGGGCATGTGC
TAGTGTCGCATTTATCTTTGTCGGGGCACCATCACCGAAGAAGTTGACCGACGGCATTGGGGTTC
CGACGATCGGGGGGCTGG
Found at i:13013981 original size:26 final size:26
Alignment explanation
Indices: 13013945--13013997 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13013935 GTTGACTTAG
13013945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13013971 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13013997 G
1 G
13013998 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13015339 original size:713 final size:706
Alignment explanation
Indices: 13013975--13015423 Score: 2040
Period size: 713 Copynumber: 2.0 Consensus size: 706
13013965 GTCTAAGCAT
* * * * * *
13013975 ACGGAGTTCATTTCCAGTCTAAGATCGGACCAGACTGGGGGTTACGGTAACACATGCTGGGTTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGATACGGCAACACATGCTGGGCTCG
** *
13014040 GGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCACTAGAGCATCGTCGGAGAACTT
66 GGCATGTGCTGGTGCCCCATTTTTCTTCCCCGGGGCACCATCACTAGAGCATCGCCGGAGAACTT
13014105 GACGGGAGGCATTAGGGTTCCAACAATCGGGGGGGGCGTATGCACATGATGTGCGATGGGTGCTG
131 GACGGGAGGCATTAGGGTTCCAACAATCGGGGGGGGCGTATGCACATGATGTGCGATGGGTGCTG
* * *
13014170 GTACTTGGCTCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
196 GTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCCTTAAAGA
*
13014235 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGTGACACTTTTT
261 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTT
* *
13014300 TCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGTTGAATGTTTTTGTGCATGCCAACAA
326 TCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAATGTTTTTATGCATGCCAACAA
* * * **
13014365 AAATACCAGGATCACGTCTAATAAGTTTGGACCCAAAACTCCTTCCGAAAAAAATTTAAAAAATC
391 AAACACAAGGATCACGTCTAACAAGTTTGGACCCAAAACTAATTCCGAAAAAAATTTAAAAAATC
* *
13014430 CCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGGAACTTC
456 CCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTC
***
13014495 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTGTAGAA
521 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAGGTAGAA
* * * **
13014560 ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATGCACGGCTTGCGCATCCCGTCTCTC
586 ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATACACGACATGCGCATCCCACCTCTC
* * * *
13014625 TGGCCGGCGTTGTGCCCGCCTGCAC-GCCCGCTCGTTTCTTCGATTGGCTTAGGAAA
651 TGGCCGGCGTAGTGCCCGCCCGC-CTGCCCGCTCATTTCGTCGATTGGCTTAGGAAA
* * * * *
13014681 ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGTGGGATGCGGCAGCACATGCTGGGCTGG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGATACGGCAACACATGCTGGGCTCG
* ** * *
13014746 GGCATGTTCTGGTGCCCCATTTTTCTTCGTCGGGGCACCATC-GTCGGAGCATCGCCGGAGAACT
66 GGCATGTGCTGGTGCCCCATTTTTCTTCCCCGGGGCACCATCACT-AGAGCATCGCCGGAGAACT
* * * * * * * **
13014810 TGACTGGTGGCATTGGGGTTCCGACGATCGGGGGGTCAAGGGGGTGTGCGCACATGATGTTTGAT
130 TGACGGGAGGCATTAGGGTTCCAACAATC-GGGGG----GGGCGTAT--GCACATGATGTGCGAT
* * *
13014875 GGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAATATCAAGAACTCACACCG
188 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACATCAAGAACTCACACCC
* *
13014940 CCTTAAAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGG
252 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGG
* * *
13015004 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGCGTTTTTAGCTGAATTTTTTTATGCA
317 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAATGTTTTTATGCA
* * ** *
13015069 TGCCAACAAAAACACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTAATTCCGAAAAAATTT
382 TGCCAACAAAAACACAAGGATCACGTCTAACAAGTTTGGACCCAAAACTAATTCCGAAAAAAATT
* * * * * * *
13015134 TAAAAAATCCCGAACCGCAAAAGGTTTCGAGAATCATGAAAAATATAAAACGAGTCATCTTGCCA
447 TAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCA
* * *
13015199 TGAAACTTCACGTGAGGGCTTCAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGG
512 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
13015264 AAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATACACGACATGCGCATC
577 AAGGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATACACGACATGCGCATC
* * * *
13015329 CCACCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCTCGCTCATTTCGTCGATTGGCTTAGGCAT
642 CCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCATTTCGTCGATTGGCTTAGGAAA
*
13015394 ACGGAGTTCATTCCCACTCTAAGATCAGAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGAC
13015424 TGGACTGAAG
Statistics
Matches: 649, Mismatches: 84, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
705 1 0.00
706 132 0.20
707 5 0.01
711 6 0.01
712 1 0.00
713 444 0.68
714 60 0.09
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (706 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGATACGGCAACACATGCTGGGCTCG
GGCATGTGCTGGTGCCCCATTTTTCTTCCCCGGGGCACCATCACTAGAGCATCGCCGGAGAACTT
GACGGGAGGCATTAGGGTTCCAACAATCGGGGGGGGCGTATGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAATGTTTTTATGCATGCCAACAA
AAACACAAGGATCACGTCTAACAAGTTTGGACCCAAAACTAATTCCGAAAAAAATTTAAAAAATC
CCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAGGTAGAA
ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATACACGACATGCGCATCCCACCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCATTTCGTCGATTGGCTTAGGAAA
Found at i:13016442 original size:898 final size:895
Alignment explanation
Indices: 13014681--13019062 Score: 5629
Period size: 898 Copynumber: 4.9 Consensus size: 895
13014671 GCTTAGGAAA
* * * * * *
13014681 ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGTGGGATGCGGCAGCACATGCTGGGCTGG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCG
* * * *
13014746 GGCATGTTCTGGTGCCCCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * ** **
13014811 GACTGGTGGCATTGGGGTTCCGACGATCGGGGGGTCAAGGGGGTGTGCGCACATGATGTTTGATG
131 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATG
* ** * *
13014876 GGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAATATCAAGAACTCACACCGC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
13014941 CTTAAAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
13015005 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGCGTTTTTAGCTGAATTTTTTTATGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCAT
* * ** *
13015070 GCCAACAAAAACACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTAATTCCGAAAAAATTTT
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCAAAAAAATTTT
* * * * *
13015135 AAAAAATCCCGAACCGCAAAAGGTTTCGAGAATCATGAAAAATATAAAACGAGTCATCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * *
13015200 GAAACTTCACGTGAGGGCTTCAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGA
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
* * * * * *
13015265 AGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATACACGACATGCGCATCC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * *
13015330 CACCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCTCGCTCATTTCGTCGATTGGCTTAGGCATA
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATA
* * *
13015395 CGGAGTTCATTCCCACTCTAAGATCAGACTGGACTGAA-GGTTGCGGTAGCAGGATCGACAGCAC
713 CGGAGTTCATTCCCAGTCTAAGATCAGACTAGAC-CAAGGGTTGCGGTAGCAGGATCGACAGCAC
* * * * * *
13015459 GTAGAGGGGGATCGGGCCGATCCCC-AGCTTACGAATCTCACCT-CTTTGGGCGACTGAGCGCCC
777 GCAGAGGGGGACCCGGCCGATCCCCGAGCTTACGCATC-C-CCTCCTCTGGCCGACTGAGCGCCC
* * * * *
13015522 GTACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTATGGAT
840 GCACGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGT-TAAGCAT
* * * *
13015579 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGTCTGAGGGTTACGACAACACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCG
* * * *** * * * *
13015644 GGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCTTGATCACCGGAGCATCACCGAAGAACTT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * *
13015709 GACCGGCGGTATTGGGGTTCCAACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGAT
131 GACCGGCGGCATTGGGGTTCCGACGATCGG-GGGG-CCGGGGGGTGTGCGCACATGATGTGCGAT
* *
13015774 GGGTGCTGGAACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
13015839 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
13015904 ACACTTTTTTCAAATGGTTACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAATTTTTTATGCAT
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
* *
13015969 ACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAACTCCTTCCAAAAAAATTTTA
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCAAAAAAATTTTA
* * * *
13016034 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCTTCTCGCCATG
454 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
* * * *
13016099 AAACTTCACGTGAGGGCTTAAGAGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTCGAA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAA
13016164 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
584 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
13016229 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCATCGATTGGCTTAGGCATAC
649 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATAC
* * *
13016294 GGAGTTCATTCCCTA-TCTAAGACCAGACTGGACCAAGGGTTGTGGTAGCAGGATC-AGCAGCAC
714 GGAGTTCATTCCC-AGTCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAGGATCGA-CAGCAC
* ** ** * * *
13016357 GCAGAGGGGGACCCAGTTGATCCCCGA-CTTGTGCATCCCGTGCCTCTAGCCGACTGAGCACCCG
777 GCAGAGGGGGACCCGGCCGATCCCCGAGCTTACGCATCCCCT-CCTCTGGCCGACTGAGCGCCCG
*
13016421 CACGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTATAAGCAT
841 CACGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGT-TAAGCAT
* * *
13016477 ACCGAGTTCATTCCCAGTCTAAGATC-GAACCTGACCGAGGGTTACGACAGCACATGCTAGGCTC
1 ACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * ** *
13016541 GGGCA-GTGCTGGTGCCGCATTTTCCTTCGTTGGGGCACCATCATCAGAGCATCGCCGGAGAACC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
* *
13016605 TGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACGTGATGTGCGATG
130 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
13016670 GGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACACC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
13016735 CTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
13016800 CAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCAT
* * * * *
13016865 GCCAAAAAAAATACAAGGGTCACATCTACCAAG-TTGGGACCAAAACTCC-TCAAAAAAAATTTT
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCCAAAAAAATTTT
* * *
13016928 AAAAAATCCCGAACCGTAAAAAGTTTCATAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
13016993 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGG
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
*
13017058 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
13017123 CGTCTCTCTAGCCGACGTAGTGCCTGCCCTCCCGCCCGCTCATTTCGTTGATTGGCTTAGGTATA
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATA
* * * * * * * * * *
13017188 CAGAGTCCATTCCCAGTCTAACATTAGACCAGACCAAGTGTTGTGGCAGCAAGATCGATAGCACG
713 CGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACG
* * * * * *
13017253 CTGAGGGGGACCCGGCCAAT-CCCTAGCTTACGGATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
778 CAGAGGGGGACCCGGCCGATCCCCGAGCTTACGCATCCC-CTCCTCTGGCCGACTGAGCGCCCGC
* *
13017317 CCGCTCGTTTC--A---TG-----GG--T-TG-A---C-TT---AG----GCAT
842 ACGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTAAGCAT
* * ** *
13017346 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGTTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCG
* ** **
13017411 AGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCAACAAAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * * * * * * *
13017476 GACCGACGACATTAGGGATCTGGCGATCGAGGGGGCCAGGGGGTGTGCGCACATGATGTGAGATG
131 GACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
** * * * * *
13017541 GGTGCTGACAGTTGGCCCTTATATTAGCCCCCTATCCATCATTAAGCCTCGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
13017606 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAACGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
13017671 CACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCAAGTTTTTACCTGAATTTTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCAT
* * * * *
13017736 GCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGTGCCAAAATTCCTTTCGAAAAAATTTT
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCAAAACTCCTTCCAAAAAAATTTT
* * * * * *
13017801 AAAAAATCTCAAACCCTAAAAAGTTTCGAAAATAATGAAAAATACAAAACGAGTCATCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
*
13017866 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
* * * * *
13017931 ACGCAGAAATATGAAGATGTACCTAAATCCACCTACCACTCTATCGATCCACGGCTTGCGCATCT
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
13017996 CGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGCCCGCCCGCTCATTTCATCGATTAGCA
648 CGTCTCTCTGGCCGGCGTA--G--TGCCCG--C-C-CGCCCGCCCGCTCATTTCGTCGATTGGCT
* * * * * *
13018061 TAGGCATATGGAGTTCATTCCCAGTCTAAGGT-TGAACAAGACCGAGGGTTGCGGTAGTAGGATC
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTAGACCAAGGGTTGCGGTAGCAGGATC
** * ** * * *
13018125 G-GTGCCATGCAGAGGGGGACCCGATCGATCCCCG-GCTTGCACATCCCACTCCTCTGGCCGGCT
769 GACAG-CACGCAGAGGGGGACCCGGCCGATCCCCGAGCTTACGCATCCC-CTCCTCTGGCCGACT
* * *
13018188 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCAT
832 GAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGT-TAAGCAT
* * *
13018253 ACGGAGTTCATTCCCAGTCTAAGATCGGACCACACCGAGGGTTACGATAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCG
* * * * * *
13018318 GGCATGTGCTGGTGTCGCATTATTCTTCGTTGGGGCACCATTGCCGGACCATCGTCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * ** * *
13018383 GACCGACGACATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGGACATGATGTGTGATGG
131 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
13018448 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
196 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
13018512 TTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGAC
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
13018577 AATTTTTTCAAATGGTCCCAAAATCTTGTACACTTGGAGTTTTTAGCTAAATGTTTTTGTGCATG
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATG
* *
13018642 CCAACAAAAATACAAGGATCACGTCTAGCAAGTTCGGGGCCAAAACT-C--CCAAAAAAATTTTA
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCAAAAAAATTTTA
* * * *
13018704 AAAAATCCCGAACCAG-AAAATGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCAT
454 AAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
13018768 GAAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
*
13018833 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
13018898 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAC-CCCGTTCGTTTCGTCGGTTGGCTTAGGCAT
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-CGCCCGCTCATTTCGTCGATTGGCTTAGGCAT
* * * * * *
13018962 AAGGAGTTAATTCCCAGTCTAAGATCGGA-TCAGATCGAGGGTTACGGTAGCAGGATCGACAGCA
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCAAGGGTTGCGGTAGCAGGATCGACAGCA
* * *
13019026 CACAGAAGGGGACCCGGCCGATCCCTG-GCTTACGCAT
776 CGCAGAGGGGGACCCGGCCGATCCCCGAGCTTACGCAT
13019063 TGGCACGTAG
Statistics
Matches: 3028, Mismatches: 390, Indels: 136
0.85 0.11 0.04
Matches are distributed among these distances:
869 63 0.02
870 74 0.02
871 233 0.08
872 15 0.00
873 207 0.07
874 2 0.00
875 1 0.00
877 7 0.00
878 1 0.00
879 1 0.00
880 3 0.00
881 137 0.05
882 4 0.00
883 1 0.00
885 2 0.00
886 2 0.00
890 2 0.00
891 2 0.00
893 2 0.00
894 112 0.04
895 567 0.19
896 54 0.02
897 79 0.03
898 601 0.20
899 169 0.06
900 84 0.03
902 210 0.07
904 3 0.00
905 190 0.06
906 55 0.02
907 145 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCAAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
AGGGGGACCCGGCCGATCCCCGAGCTTACGCATCCCCTCCTCTGGCCGACTGAGCGCCCGCACGC
TCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTAAGCAT
Found at i:13016484 original size:26 final size:26
Alignment explanation
Indices: 13016447--13016499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13016437 GTTGACTTAG
13016447 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
13016473 GCATACCG-AGTTCATTCCCAGTCTAA
1 GCATA-CGAAGTTCATTCCCAGTATAA
13016499 G
1 G
13016500 ATCGAACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:13018253 original size:26 final size:26
Alignment explanation
Indices: 13018223--13018275 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13018213 GTTGACTTAG
*
13018223 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13018249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13018275 G
1 G
13018276 ATCGGACCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13021274 original size:26 final size:26
Alignment explanation
Indices: 13021238--13021290 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13021228 GTTGACTTAG
13021238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13021264 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13021290 G
1 G
13021291 GTCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13022309 original size:8 final size:9
Alignment explanation
Indices: 13022283--13022308 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
13022273 GTTCTGGCGA
13022283 TCGGGGGGG
1 TCGGGGGGG
13022292 TCGGGGGGG
1 TCGGGGGGG
13022301 TCGGGGGG
1 TCGGGGGG
13022309 TGTGCGCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.77, T:0.12
Consensus pattern (9 bp):
TCGGGGGGG
Found at i:13022783 original size:874 final size:872
Alignment explanation
Indices: 13021264--13023802 Score: 3092
Period size: 899 Copynumber: 2.9 Consensus size: 872
13021254 CCCAGTCTAA
* * ** * * *
13021264 GCATATGGAGTTCATTCCCAGTCTAAGGTCAGACCGAACCGAAGGTTGTGGTAGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTGCGGTAGCACATGCTGGG
* * * ** * * *
13021329 CTCGGGCTTGTGCTGGTGCCACATTTTTCTTC-TCCAGGGTACCATCGCCGGAGCATCGCCAGTG
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGT-TGGGGCACCATCGCCGGAGCATCGTCAGAG
*
13021393 AACCTGACCGACGGCATTGGGGTTCCGGCAATCGGGGGGG-C------CGAGGGGGTGTGCGCAC
130 AACCTGACCGACGGCATTGGGGTT-CGGCGATCGGGGGGGTCGGGGGGCG-GGGGGTGTGCGCAC
*
13021451 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
193 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * * *
13021516 GAACTCACACTCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGTTGCCAGCAGACATTAAAGTG
258 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
13021581 TCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
323 TCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
*
13021646 TTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
388 TTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ** * *
13021711 TCGAAAAAATTTTAAAAAATCCTGAACTGTAAAAATTTTTGAAAATTGTGAAAAATTTGAAAACG
453 TCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACG
13021776 A--------G-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
517 AGTCGTCTTGCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAA
*
13021832 AAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
581 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* **
13021897 AGCTTACACATCCCGTCTCTCTGGCCGGCGTAGTGCATGCCCG-CCAGCTCGTTTCGTCGGTTGG
646 AGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCAGCTCGTTTCGTCGGTTGG
* *
13021961 CTTAGGCATACAGAGTTCATT-CACTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATC
711 CTTAGGCATACGGAGTTCATTCCAATCTAAGATTGGACCAGA-CGAGGGTTGCGGCAGCAGGATC
* * * * * * * **
13022025 -G-GTATCATGTATAGGGGGGCCCGGCCGATCCTCGGC-ATGCGTATCCCGCCCCTCTGGCCGAC
775 AGCG-A-CACGCAGAGGGGGACCCGACCGATCCCCAGCTA-GCACATCCCGCCCCTCTGGCCGAC
* *
13022087 TGATCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
13022123 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGAACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
13022188 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCGTCAAAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCAGAGA
*
13022253 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTCGGGGGGGTCGGGGGGTGTGCGCAC
131 ACCTGACCGACGGCATTGGGGTTC-GGCGATCGGGGGGGTC-GGGGGG-CGGGGGGTGTGCGCAC
* * ** *
13022318 ATGATGTGCAATGGGTGCAGGTACTT-GCCTTTATATTATCCCCCTATCCCTCATCAAACCTAGA
193 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
13022382 GAACTCACCCCCCCTTAAGGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
258 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
**
13022447 TCTGAAATGGGGACAC-TTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
323 TCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
* * * * * *
13022511 TTTTTTTGTTCATGCCAATAAAAATTCAAGGATCATGTCTACCAAGTTTGAGGCTAAAAATCTTT
388 TTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
*
13022576 TCGAAAAAATTTTAAAAAATCATGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
453 TCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
13022641 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAACGGACCATTGTATGAATTTAGAAGCCATAA
518 GTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAA
* **
13022706 AAATGGTATTGGCATGCAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
581 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
13022771 AGCTTGCACATCCCGTCTCTCTGGCCGGAGGAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGT
646 AGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC--CAGCTCGTTTCGTCGGT
* * ** * *
13022836 TGTCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACTGAGGGTTGCAGCAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCC-AATCTAAGATTGGACCAGAC-GAGGGTTGCGGCAGCAG
* * * *
13022901 GATCAGCGACACGCAGAGGGGGACCCGACCGATCCCCAGCTAGCACATCTCGCGCCTCTGGCTGG
771 GATCAGCGACACGCAGAGGGGGACCCGACCGATCCCCAGCTAGCACATCCCGCCCCTCTGGCCGA
*
13022966 CTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAG
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13023003 GCATATGGAGTTAATTCCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCAGACCAGAC
1 GCATATGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A---T----T--G---A-AC
* * * *
13023068 CGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATCTGCTGGTGTCGCATTGTTCTTCGCTGGGG
40 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGG
* * * * * * * *
13023133 CACCATCGTCAGAGCATCATCGGAGAACCTGATCGATGGCATTGTGGTTC--CGA-C-----GAT
105 CACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCGGCGATCGGGGGGGT
* * * * *
13023190 CGGGGGGCCGGGGGGTGTGAGTAGATGATGTGTGAA-GGGTGCTGGTACTTGGCCCTTATACTGG
170 CGGGGGG-CGGGGGGTGTGCGCACATGATGTG-CAATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
13023254 CCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTATAGG
233 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
13023319 TTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATAGTCACAAAATCT
298 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCT
* * *
13023384 TGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCACGTC
363 TGTACACTTCGAGTTTTTAGCT-AAATTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCATGTC
* * * * **
13023449 TACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
427 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTT
13023514 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGAGA
492 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAAG-GA
* * * * * *
13023579 CCATTGTATGGATTTATATGCCATAAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
555 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
13023644 ACCCACCTACCACCCTATCGATCCACGGCTTGCACATGCCGTCTCTCTGGCCGACGTAGTGCCCG
620 ACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
13023709 CCCGCCCACCCACTCGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTAATTCCCAATCTAAG
685 CCCG----CCCA---GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAATCTAAG
* *
13023774 ATTGAATCAGACCGAGGGTTGCGGCAGCA
742 ATTGGACCAGA-CGAGGGTTGCGGCAGCA
13023803 CATGCTGGGC
Statistics
Matches: 1433, Mismatches: 177, Indels: 96
0.84 0.10 0.06
Matches are distributed among these distances:
858 1 0.00
859 141 0.10
860 2 0.00
864 9 0.01
865 152 0.11
866 107 0.07
867 38 0.03
868 2 0.00
872 1 0.00
874 150 0.10
876 1 0.00
878 38 0.03
879 2 0.00
880 135 0.09
881 5 0.00
882 2 0.00
883 1 0.00
884 1 0.00
893 1 0.00
896 41 0.03
897 113 0.08
898 42 0.03
899 273 0.19
900 2 0.00
902 4 0.00
903 66 0.05
904 3 0.00
905 1 0.00
906 99 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCAGAGA
ACCTGACCGACGGCATTGGGGTTCGGCGATCGGGGGGGTCGGGGGGCGGGGGGTGTGCGCACATG
ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT
TTTTGTGCATGCCAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
AAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
GCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCAGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCAATCTAAGATTGGACCAGACGAGGGTTGCGGCAGCAGGATCAGCGAC
ACGCAGAGGGGGACCCGACCGATCCCCAGCTAGCACATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13026036 original size:26 final size:26
Alignment explanation
Indices: 13026007--13026058 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13025997 TTGACTTAGC
* *
13026007 CATACGGATTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
13026033 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
13026059 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:13027820 original size:26 final size:26
Alignment explanation
Indices: 13027785--13027842 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
13027775 CGTGGGTTGA
13027785 CTAAGGCATACAAAGTTCATTCCCAGT
1 CTAA-GCATACAAAGTTCATTCCCAGT
** * *
13027812 CTAAGCATACGGAGTTGATTCCTAGT
1 CTAAGCATACAAAGTTCATTCCCAGT
13027838 CTAAG
1 CTAAG
13027843 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACAAAGTTCATTCCCAGT
Found at i:13028297 original size:899 final size:898
Alignment explanation
Indices: 13025616--13051280 Score: 18879
Period size: 891 Copynumber: 28.3 Consensus size: 898
13025606 CATACCAACT
* * * *
13025616 GCAAAAAGTATTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTTACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
13025681 GGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAACAATGGCATTGGCATGCA-A-AAATATG
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATG
* *
13025744 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTGGCC
129 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
13025809 GGCGTAGT--------GCCTGCCCGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
194 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * *
13025866 CAATCTAAGATCGGACCGAACTGAGGGTTGCGGTAGCAGGAAT-GGTAGCACGTAGAAGGGGA-C
259 CAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGG-ATCGGCAGCACGCAGAAGGGGACC
* * * * *
13025929 CAACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTCCGT
323 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * *
13025994 GGGTTGACTTAGCCATACGGATTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
388 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * *
13026059 ATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTT
453 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
** * * * *
13026124 TCTTCACCGGGGCACCATC-ACAGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
518 TCTTCGTCGGGGCACCATCGTC-GAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCG
13026188 ACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
582 ACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
13026252 TATTGTCCCCCTATCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
13026317 TACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
13026382 AAATCTTGTATACTTCCAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
13026447 ACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTGAAAAATCCCGAACC
840 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
* * *
13026506 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGGAACTTCACGTCAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
**
13026571 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * * *
13026636 GATGTGCCTAACCCCACCTACCACCCTACCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGA
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
*
13026701 CGTAGT--------GCCCGCCCGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCA
196 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** ** * * * * *
13026758 GTCTAAGATCGGATCAAACAAATGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCAG
261 GTCTAAGATCAGATCGGACCGA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCG
* * * * * * *
13026823 CT-GATCCACGGCTTACGCATCCCGCCCCTCTGGCCAGCTTAGCGCCCACACGCTCGTTTCATGG
325 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
13026887 GTTGACTTAGGCATACGGAGTTTATTCCCA----AAGCACACGGAGTTCATTCCCAGTCTAAGAT
390 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
13026948 TGGACCAGACCGAGGGTTGCAGCAGCACATGCCGGG-TGTGGGCATGTGCTGGTGCCGCACTTTT
455 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT-CGGGCATGTGCTGGTGCCGCATTTTT
** ** * * * * * * *
13027012 CTTCACCGGGGCACCATCCCCGGAGCATCATCAGAGAACTTGACCGGCAGCATTGGGGTTCCGAC
519 CTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGAC
* * * * * *
13027077 GATC-GGGGGGTCGGGGGGTGTTCACACATGATGTACAATGGGTGCTGGTACTTTGCCCTTATAT
584 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
13027141 TGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTAC
649 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
13027205 AGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
714 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
13027270 TCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTCTACATGCCAACAAAAATACAAGGATCACG
779 TCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACG
** *
13027335 TCTACCAAGTTTGGATCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCAAACC
843 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
* *
13027391 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAATTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
**
13027456 GGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCACATAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
13027521 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * * *
13027586 CGTAATGCCCGCCCGCCCACCCGCTCGTTTTGCCGATTGGCTTAGGCATACAGAGTTCATTCCTA
196 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * *
13027651 GTCTAAGATCGGA-CTGGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGAAGGGGACCCG
261 GTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCG
* * * * * *
13027715 ATCGATCCCCTGCTTGCGCATCCC-CCCTTTCTAGCTGGCTGAGCGCCCGCACACTCGTTCCGTG
325 ATCGATCCCCGGCTTGCGCATCCCGCCC-CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* ** * *
13027779 GGTTGACTAAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCTAGTCTAAGA
389 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * ** * * * *
13027844 TCGAACTAGATCGAGGGTTCCAACAGCACATGCTGGGCTTGGGCACGTGCTAGTGCCGTATTTTT
454 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* **
13027909 CTTTGTCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGACTGACGGCATTGGGGTTCCGAC
519 CTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGAC
** * *
13027974 GATCAAGGGGACCGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
584 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
13028039 TGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAGGAGCATTTGAGATTTTAC
649 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
13028104 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACAGTTTTTTCAAATGGTCACAAAA
714 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
13028169 TCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGGCAACAAAAATA-AAGGGATCAT
779 TCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAA-GGATCAC
* * *
13028233 GTCTGCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATTCGGAACC
842 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
* ** * * * *
13028290 ACAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCGTCCTGCCATGAAACTTGACGTGAT
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
13028355 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * **
13028420 GATGTGGCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTTGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
13028485 CGTAGT--------GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCCA
196 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * *
13028542 GTCTAAGATCAGACCAGACCGAGCGTTACGGTAGTAGGATCAGCAGCACGTA-AAGGGGGACCAG
261 GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAA-GGGGACCCG
* * *
13028606 ATCGATCCTCGGCCTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
325 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* ** * *
13028671 GTTGACTAAGGCATATAGAGTTCATTCCCGGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
390 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
13028736 CAGACTGGACTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGACGTATTTTTC
455 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * * * *
13028801 TTCGTCGGGGCACCATTG-CCAGAGCATCGCCGGAGAACTTGACCGGCGGTATTCGGGTTCCGAC
520 TTCGTCGGGGCACCATCGTCGA-AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGAC
* * * * *
13028865 GATCGGGGGGGTCGGGGGGTGTGTGCACATGTTGTGCGATGGGTGCTGGTAATTGGCCGTTATAT
584 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
13028930 TGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
649 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
13028995 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAA
714 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
13029060 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAGGGATCATG
779 TCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * *
13029125 TCTACCAAGTTTGGGGCCAAAATTCCTTCC-AAAAGAATTTAAAAAAATCCCAAACC
843 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATTCCGAACC
* * * *
13029181 GTAAAAAGTTTCGAAAATCATGATAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
13029246 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCATGCA-A-AAATATG
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATG
* * *
13029309 AAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATCCCGTCTCGT-TGGA
129 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGC
* * *
13029373 CAGCGTAGTGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
193 CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * *
13029438 GCAGTCTACGATTAGATCAGACCGAAGGTTGTGGCAGCAGGATCGGCAACAGGCAGAGGGGGACC
258 CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACC
* ** * * *
13029503 C-AACTGATCCCCTACTTGCACATCCAGCCCCTCTGGCCGACTGAGCGCCCGCTA-GCTCGTTTC
323 CGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC-ACGCTCGTTTC
* * * ** * * * *
13029566 ATGGGTTGACTTAGTCAAACAAAGTTCATTCCCTGTCTAAGCAAATGGAGTTCATTCTCAGTCTA
386 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* ** * * * * *
13029631 AGATCGGACCAGACTAATGCTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGCATT
451 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * *
13029696 TTTCTTCGTCGGGGCACCATTGTCGAAGCATTGCCGGAGAACTTGACTGACGGCAGTGGGGTTCC
516 TTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCC
* * * * **
13029761 TG-TGATCGGGGGGGCCGGGGGGGTGTGTGCACAAGATGTGCGAAGGGTGCTGGTACTTGTTCCT
581 -GACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * *
13029825 CATATTGGCCCCCTATCTCTCATCAAACATCGAGAACTCACACCTCCTTAAAGAGCATTTGAGAT
644 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
13029890 TTTATAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAGTGGGGCCACTTTTTTCAAATGGTCA
709 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
13029955 CAAAATCTTGTACACTTC-AGGTTTTTAGCTGAATTTTTTTTGCATGCCAACCAAAATACAAGGA
774 CAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
13030019 TCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-TCTTGAACA
838 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC-CGAACC
* ** * *
13030080 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* ***
13030145 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * *
13030210 GATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGTCGA
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
**
13030275 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTAA
196 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * *
13030340 GTCTATGATTAGATCGGACCGAGGGTTACGGTAGTAGGATTGACAGCATGCAG-AGGGG----GA
261 GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGA
* * * *
13030400 -C-A----CAGC---CG-AT-------C-C---CCGG--GA-----TGCATGCTCGTTTCGTCGG
326 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* ** *
13030437 TTGACTTAGGCATACGGAGTTCAATCCCCTTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
391 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
13030502 GGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCA
456 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
13030567 TCGTCGGGGCACCATCGTCGGAGCATCGTCGGACAACCTGACTGACGGCATTGGGGTTCCGACGA
521 TCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGA
* * * *
13030632 TCGGGGGGGTCGGGGGGGTGTGCGTACATGATGTGCGATGGGTGTTGGTACTTTGCCCTTATATT
586 TCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
13030697 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-ACCCTTAAAGAGCATTTGAGATTTTATA
650 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
13030761 GCTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
715 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
13030826 CTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGC
780 CTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * ** *
13030891 CTACCAAGTTTGATGCCAAAACTCCTTCTGAAAAAATTTTAGCAAA-TCCTGAATC
844 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCC-GAACC
* * *
13030946 GCAAAATGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCCTCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* **
13031011 GGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * * *
13031076 TATGTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
13031141 CGTAGTGATCGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
196 CGTA--G-T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** * * ** * * * **
13031206 CATAGTCTAAGATCGGACCAAACCGAGGGTTGTGGTAGCAGGATTGGCAGCACAAAG-AGTGGGA
257 CCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAG-GGGA
* * *
13031270 CCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACACTCGCTTT
321 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTT
* * *
13031335 -GTGGGTTAACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCT
385 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
13031399 AAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTAGTGTCGCAT
450 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *
13031464 TTTTCTTCGTCGGGGCACCAT--T----G---C--CGGAGAACCTGACCGATGGCATTGGGGATC
515 TTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTC
* * *
13031518 CGACGATCGAGGGGGCCGTGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTT
580 CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
13031583 ATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
645 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13031648 TTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCAC
710 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
13031713 AAAATCTTGTACACTTCGAGTTTGTGGCTGAATTGCTTTGTGCATGCCAACAAAAATACAAGGAT
775 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
13031778 CATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACC
839 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
* * * *
13031838 GCAAAAAGTATCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * * * *
13031903 GGCTTAAAGGACGATTGTAAGAATTTACAAGCCACAAAAATGGCATTGGCA-TTCACAAATATGA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT-AGAAATATGA
* *
13031967 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCG
130 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
13032032 ACGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
195 GCGTAGT--------GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
** * * * * * *
13032097 TCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACGGCACCAGGATCGACAGCACACAGAGG
252 TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAG
* * * * *
13032162 GGGACCCGATCAATCCCTGGCTTGCGCATCGCGCCCCTCTGGCCTGCTGAGC-ACCGACACGCTC
317 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG-CACGCTC
* *
13032226 GTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
381 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
13032291 GTCTATGATCAGACCGGACCGAGGGTTGCGGTAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCC
446 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
13032356 ACATTTTTCTTCGTCGGGGCACCATCGCCGATGCATCGTCGGAGAACCTGAC-CAGCGGCTTTGG
511 GCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGA-CGGCATTGG
*** *
13032420 GGTTCC-AGCGATCGGGGGGGCCGGAGGGTGTGTGCGCACATGATGTGCGATTACTACTGGTACT
575 GGTTCCGA-CGATCGGGGGGGCCGG-GGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
13032484 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCAT
637 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
13032549 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAA
702 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * *
13032614 ATGGTCACAAAATCTTGTACACTTCCATTTTTTAGTTGAATTGTTTTATGCATGTCAACAAAAAT
767 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAAT
* *
13032679 ACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCGTTCC-AAAAGAATTTTAAAAAA-TCTC
831 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATTC-C
13032742 GAACC
894 GAACC
* * **
13032747 GTAAAAAGTTTTGAAAATCATGATCAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
13032812 GGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGTATAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
** * ** * * *
13032877 GATGT-CCATAAACCCACCTGTCACCCTATCGGTCCACGGCTTATGCATCCTGTCTTTCTGGCCA
131 GATGTGCC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* ** *
13032941 GCGTAGTG--C-CCC-CCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATATAGAGTTCATTCCT
195 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * *
13033002 AGTCTAAGATCAGATCGGACCAAGGGTAGTGGCAGTAGGATCGGCAGCAGGCAGAGGGGGACCCG
260 AGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCG
* * *
13033067 ATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCGCCAGCACGCTCGTTTCGTGG
325 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
13033132 GTTGACTTAGGCATACGGAGTTCATTCCCTA-TCTAAGCATACGGAGTTCATTCCCAATCTAAGA
390 GTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
13033196 TCGGACCGGACAGATGGTGGCGGCAGAACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTT
454 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* *
13033261 CTTCG-CTGGGGCACTATCGTC-AGAGCATCGTCGGAGAACCTGA-TCGATGGCATTGGGGTTCC
519 CTTCGTC-GGGGCACCATCGTCGA-AGCATCGTCGGAGAACCTGACT-GACGGCATTGGGGTTCC
* * * *
13033323 GACAATCGGGGGGG-CTGGGGGTGTGCGCACATGGTGTGCGAAGGGTGCTGGTACTTGGCCCTTA
581 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
13033387 TACTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
13033452 TATAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
13033517 AAATCTTGTATACTTCGAGTTTTTAGCTGAATTCTTTT-TGCATGCCAACAAAAATACAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
13033581 ATGTCTACCAAGCTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAA-TCATGAACC
840 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC-CGAACC
* * *
13033640 GCAAAATGTTTTGAAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATAAAAGC-TCAC-TAG
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-CTTCACGT-G
*
13033703 AAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACATAG-AATATG
64 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
* * * * * *
13033767 AAGATGTGCCTAAACCAACCTA-CACCCTATCGATCCACGGCTTGCACATCACATCTCTCTAGTC
129 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
13033831 GACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCC
194 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * *
13033896 CAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGGCAGTAGGCAGACGAGGACCT
259 CAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCC
** * * * *
13033961 GGCCAATCCTCAGCTTGCGCATCCC-CCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
324 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
*
13034025 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
389 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** **
13034090 TCAGACTGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGACCATGTGCTGGTGCCGCATTTTT
454 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * *
13034155 GTTCG-CTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGGCGACATTGGGGTTCCGA
519 CTTCGTC-GGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGA
*
13034219 CGATC-GGGGGGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
583 CGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
13034283 TATTGGCCCCCTATCCCTCATCAAACCACAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
13034348 TACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCATA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
13034413 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAATATACAAGGAT
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAA-ATACAAGGAT
* * * * ** *
13034478 CATGTCTGCCACGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATTTTGAATC
839 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
* ** * * *
13034538 ACAAAAAGTTTACAAAATCGTGAAAAATAGAAAAGGAGTTGTCCTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
13034603 GGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATG
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATG
* * * *
13034666 AAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGTC
129 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
13034731 GACGTAGTGCCCGCTCGCCCGTCCGCTCGTTTCGTCGGTTGGCATAGGCATACAGAGTTCATTCC
194 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * * * *
13034796 CATTCTAAGATCAGACCAGACTGAGGCTTGCAGCTGCAAGATCGGTAGCACGCAGAAGCGGACCC
259 CAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCC
* * * * * * * *
13034861 -AGTCGATCCCTGACTTGCGCATCCCGCTCCTCTGGCCGACTGATCCCCCGCACCCTTGTTTCGT
324 GA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
13034925 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCGCAGTCTAAG
388 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
13034990 ATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTT
453 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* *** * * ** * * *
13035055 TCTTCGTCGGGGCATCATTACCGGAGCATCGTCGGATAACCTGACTGACGATAATGTGGTTCCGT
518 TCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGA
* * * *
13035120 CGATCAGGGGGGCTGGGGAGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTA
583 CGATCGGGGGGGC-CGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
13035185 TATTGGGCCCCTATCCCTCATCAATCCACGAGAACTCACACCCCCATAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
**
13035250 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTTAATGGGGACACTTTTTTCAAATGGTCAC-
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
13035314 -TA-C---T--AC--C-AGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAGTAGAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
13035369 ACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-TCTTGAACC
840 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC-CGAACC
* * * *
13035428 GTAAAAAGGTTTGAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCATGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
13035493 GGCTTGAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATG
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATG
* * * *
13035556 AAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGCAACCCGTCTTTCTGGCC
129 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * *
13035621 AGTGTAGT----GCCCGCCTGCCCGCTCGTTTCATCGGTTGACTT-GCACATACGGAGTTCATTC
194 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG-GCATACGGAGTTCATTC
* * * * * *
13035681 CCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGAAGCAGGATCGACAGCACGTAGAGGGGGACC
258 CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACC
* * * * ** * *
13035746 CGATCGAGCCTCGGCTTGTGCATCCCGCCCCTTTACCCGGCTGAGCCCCCGCACGCTCGTTTCCT
323 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* ** * * *
13035811 GGGTTGACTTTGGCATACAAAGTTCATCCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTAAG
388 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
13035876 ATCGGATCAGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTT
453 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
13035941 TCTTCGTCGGGG---CA----C----CATCGTCGGAGAACCTGA-TCGGCCGTATTGGGGTTCCG
518 TCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACT-GACGGCATTGGGGTTCCG
** * * *
13035994 GTGATCGGAGGGGCCGGGGTGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGGCCCTT
582 ACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
13036059 ATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATT
645 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13036124 TTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTGTTCAAATGGTCAC
710 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
13036189 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGAT
775 AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * *
13036254 CACGTCTACCAAGTCTGGGGCCAAAAGTCCTTTC-AAAAAATTTTTGAAAAATCCCGAACC
839 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATTCCGAACC
* *
13036314 GCAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
***
13036379 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
** *
13036444 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGT-T-TAT--CACG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CG
* * ** * * * * *
13036505 GAGTTCA-TTCCCAGTCTAAGATCAGACCAGAC-CAAGGGTT-GT-GGTAGCACAAGC-TAGGC-
195 GCG-T-AGTGCCC-G-C-CCG-CCCG-CCCG-CTC---GTTTCGTCGGTTG-----GCTTAGGCA
* ** * * *** ** * **
13036564 T-CGG-G--CATGTGCTGGTGC-CACAT-TTTTCTTCACC----G--G-GGCACCATCATCGG-A
244 TACGGAGTTCAT-TCCCAGT-CTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCA
** * * * * ** ** * * ** * *
13036615 GCATTTCCG--GAGAACCTGA-C--T-GGCGGCATTG-GGGTTCCGTCGATCGGGGGGCCGGGGG
306 GCA-CGCAGAAGGGGACCCGATCGATCCCCGGC-TTGCGCATCCCGCCCCTC---TGGCC--GGC
* * * * * * * * * **** *
13036673 GGTGTGCACACATGAT-GTGT-GATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCC
364 TGAGCGCCCGCACGCTCGTTTCG-TGGGT--T-G-ACTTAGG--C--ATA-CGGAGTTC-ATTCC
* * ** ** ** * **** *
13036735 TCA-TC-AAACCT-CGAGAACTCACACCCCCT-TAAAGAGCATTTGAGATTTTA-C-AGGTTTGC
418 -CAGTCTAAGCATACG-GAGTTCATTCCCAGTCT--A-AG-A-TCG-GACCGGACCGAGGGTTGC
* * *** * * * * ***
13036794 TGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT--CACA-AAATCTT-
475 -G---GCAGC----ACA-TG-CTGGGCTCGGG-CA---TGTGC---TGGTGCCGCATTTTTCTTC
**** * ** *** ** * *** * * **
13036855 GTACACTTCGA-TATTTTAACGAAATTTTTTTGTGCATGCCAACAAAAAT-AC--AATGATGATG
523 GT-CGGGGC-ACCATCGT--CGAAGCATCGTCG-G-A-G--AACCTGACTGACGGCAT--TGGGG
* ** ***** * * * ** * * * ** ** *
13036916 TCTACC-AAG-T-TTGGGGGCC-AAAAATCCTTC-CGAAAAAATTTTACAAAATCCCGAACT-GC
577 T-T-CCGACGATCGGGGGGGCCGGGGGGT-GTGCGC-ACATGA-TGTGC--GAT-GGGTGCTGGT
**** ** * ****** * ** ***
13036975 AAAAAG-TTTTGAAAATCGTGAAAAATTGAAAACGAGTCATCTTGCCAT-GA-AACTTCACGTGA
634 ACTTGGCCCTT--ATAT--TGGCCCCCT---ATC-CCTCATCAAACC-TCGAGAAC-TCAC---A
*** * * **** * * * *
13037037 -AGGCTTAAGAGACCA-TTGTATGAATTTT-CAAGCCATAAAAATGGCA-TTGGCATGCAGAA--
686 CCCCCTTAA-AGAGCATTTG-A-G-ATTTTAC-AG--GT-TTGCTGCCAGTAGCCAT-TA-AAGT
* * * ***** ** * *** * ** *
13037096 ATATGAAGAT-GTG-C-CTAAACCCACCT-GCCACCCTATCAATCCACGGCTTGCGCA-TCCTGT
741 GTCTGAA-ATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTAC-ACTT-CG-AGT--T-T
* ** **** * ** ***** * * * * * *
13037156 CTCTCTGGCCGGTTTAGTGCCCGCC--CGTCCGT-C-CGTATGCTCGT-T-TCATCGGTTGGCTT
798 TTAGCT-GAATTTTTTGTGCATGCCAACAAAAATACAAGGAT-CACGTCTACCA-AGTTTGG---
** * ** * *** * * * *** * *
13037215 AGG-CATACGGAGTTCATTCCCAGTCTAAGATCAGAGCAGACTGAGGGTTACG
857 -GGCCA-A---AACTCCTT-CC-G-AAAAAATTTTA-AAAAAT-TCCG-AACC
** * **** ** * *** * ** * **** **
13037267 GCAGCAGGACCAGCAGCA-CGT--AGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCC
1 GCAAAAAGTTTTG-AAAATCGTGAAAAATAGAAAACGA--G-T---CGTCTTGC-CATGAAACTT
* ** * ** * * * * * *** *
13037329 CTC-TGGCCGG-TTGAGCACACGCACGCTCGTTTCG-TTGCTTGACTTAGGCATACGGA-GTTCA
58 CACGT-GAAGGCTTAAG-GGAC-CA---TTGTAT-GAAT--TT-AC-AAGCCATAAAAATG-GCA
** * * * ** * ** *** * *
13037390 TTCCCAGTC-TA-AGCATACG--GA-GT-TC-ATTCCCATTCTAATATCAAAATGGA-CTGA-GG
111 TTGGCA--CATAGA-AATATGAAGATGTGCCTAAACCCA-CCTACCA-CCCTATCGATC-CACGG
* * * * * * * * * ** ** ** **
13037446 GTTGCGGCAGCACAT-GCT-GGGCTCGAGCAT-CTG-CTG-GTG-CCG--CATTTTTCTTCACCG
170 CTTGC-GCATCCCGTCTCTCTGGC-CG-GCGTAGTGCCCGCCCGCCCGCCCGCTCGT-TTCGTCG
* * *** * * * *** * * *
13037503 G--GGC--A-CCAT-CGCCAGACG-GCATT-GGGGTTCCAGATATCGGGGGGGTCGGGGGGTATG
231 GTTGGCTTAGGCATACG---GA-GTTCATTCCCAG-TCTA-AGATCAGATCGGACCGAGGGT-TG
* * *** * ** * *** * * *
13037560 -TGCA-CATGAT-GTGCGATGGGTGCTGGTACTTGGCACTTATATTG-GCCCC--CTAT-C-CCT
289 CGGCAGCAGGATCG-GC-A-GCACGC-AG-A-AGGGGAC-CCGATCGATCCCCGGCT-TGCGCAT
* *** ** * * * * ** * * ** * ** *
13037617 CATCAAACCTC-GAG--AACTCA-CACCCCCTTAAAGAGCATTT-GAGATTTTAC--AGGTTTGC
346 C-CCGCCCCTCTG-GCCGGCTGAGCGCCCGC---ACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * ** ** * ** ** * *
13037675 TGCCAGTAGCCATT-AAAGTGTCTGAA--ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
406 -G-GAGT--TCATTCCCA--GTCT-AAGCATACGG--AGTTCATTCCCA--GTC-TAAGATC--G
* * ** ** * * * * ***
13037737 TACACTTTGACTTTTTAGTGGAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCATGTCTAC
457 GAC-C--GGAC---CGAG-GG-----TTGCG-GCA--GC-AC----ATGC-TGG-GC---TCGGG
* * * ** ** * ** * **
13037802 CAAGT-TTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTC-
497 CATGTGCTGGTGCC-GCA-T-TTTTC---------TT----CGT-CGGGGC-AC-CATCG--TCG
** ** ** * *** *** * * ** *
13037865 AAAAATCGT--GA-AAAATAGA-AAACGAGTCATCTTGCCATGAAAC-TTCACGTGAAGGCTTAA
541 AAGCATCGTCGGAGAACCT-GACTGACG-G-CAT-TGGGGTTCCGACGAT--CGGGGGGGC---C
*** ** * *** * ***** * ** * *
13037925 GGGACCATTGTATG-A-ATTTACAAGCCAT-AAAAATGGCA-TTGGCAAATAAAAATATGAAGAT
597 GGG--GGGTGTGCGCACA-TGATGTGCGATGGGTGCTGGTACTTGGC-CCT-TATAT-TG--G--
*** * * * * * * ** * * * *
13037986 GTGCGTAAACCCACCTACCACCCTATCGATCGACAGCTTGTGCATCCCGTCTCTCAGGCCGACA-
652 CCCCCT-ATCCCTCAT-CAAACC--TCGA--GA-A-C-T-CACA-CCC-CCT-TAAAG-AG-CAT
* * * *** * * * ** ** * ***
13038050 TAGTG-CTCGCCCGCCTGCCTTGGCTCGGGCATGT-GCTGTTGCCACATTTTTCTTCGATGGGG-
702 TTGAGATTTTACAG---G--TTTGCT--GCCA-GTAGCCATT---A-AAGTGTCTGAAATGGGGA
** *** * * * * * * * ** * * ***
13038112 CACCATCGCCAGAGCATCGCCAGAGAA-CCTG-ACCGACGGCATTGGGGTTTCGACGATCAGGGG
755 CACTTTTTTCA-A--ATGGTCACAAAATCTTGTA-C-A---C-TTCGAGTTTTTA-GCTGA-ATT
**** * * * ** * * * ** * *
13038175 GGCCGAGCGGGGGGGTGCGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATT-GG
809 TTTTGTGC------ATGC-CAACA-AAAATAC-AAGGAT-CACGT-C-T--ACC-AAGT-TTGGG
* *** * ** ** ** ** * *
13038237 CCCCCTA-TCCCT-C-ATCAAA-CATCGAGTACTCAC-ACCC
858 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC-CGAACC
* * * * ** * * **
13038274 TCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAACAGCCATTAA--AGT-GTC-TGAAA
1 GC--AAAAAG-TTTTGA-A----A-A---TCG-TGAAAAATAG--A-AAACGAGTCGTCTTGCCA
** **** * ** * * ** *
13038334 TGGGGACATTTTTTTGTAATGG-TCACA-AAATC-TTGTACACTTCGAGTTT-GTAGCTGAATTT
50 T-GAAAC-TTCACGTG-AA-GGCTTA-AGGGACCATTGT--A--T-GAATTTACAAGC--CA--T
**** * * ** * * ** * *
13038395 TTTTAT-GCA-TGCCAACA-A-AAATA-CAAGGATCACGTCT--ACCAAGTTTGGGGCCAAAACT
101 AAAAATGGCATTGGC-ACATAGAAATATGAA-GAT-GTGCCTAAACCCA-CCT---ACC---ACC
* ** *** **** * ****** ** *****
13038453 CTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAAAAAA
156 CTATCG-----A---T-CCACGGCTTG---CGCATCCCGTCTCTCTGGCCG-G---CGTAGTGCC
*** ** * ** * * * ** *
13038518 CGTGTTGTCTTGCCATGAAAC-TTCACGT-GAG--GGCTTAAGGGACCAT-TGTA-TGAATTTAC
205 CG-CCCG-CCCGCC-CG-CTCGTT-TCGTCG-GTTGGCTT-A-GG--CATACGGAGTTCA-TTCC
* * * * * * *** * * * * * **
13038577 AAGCCATAAAAAT-GGCATTGGCACTCAAAAATAT---GAAG-ATG-T-GCCTA-AACCCACCTA
259 CAGTC-T-AAGATCAG-ATCGG-AC-CGAGGGT-TGCGGCAGCAGGATCGGC-AGCACGCA-GAA
** * * * * *
13038634 --CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGAAG-TGCCCGCCGGCC
316 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-C--CG--GCTG--AG-C-GCC
* * * * * * * *
13038696 CGCCCGCCCGCTTATTTCATCGGCTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAG-ATTGG
372 CGCACGCTCG----TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-T--
* * * * ** * * **
13038760 ATCGGACCAAGGGTTGCA-GCACCAGGATCGACAGCACACAGAGGGGGACCCGACTGATCCCCGG
430 A-CGG----A--GTT-CATTC-CCA-G-TCTA-AG-A-TCGGA-CCGGA-CCGA-GGGT-TGCGG
* * ** * * * ** ***
13038824 CTTA-CGCATCCTGCCCCTCTGAC-CG-GCTGAGCACACGCA-CACTCATTTCGT-GGGTTG-AC
477 C--AGCACATGCTG-GGCTCGGGCATGTGCTG-GTGC-CGCATTTTTC--TTCGTCGGG--GCAC
* * * * * * * * *** * *
13038883 TTAGGCATACGGAGTTCATTCCCAGTC-TA-AGCAT-A-TGGA-GTTCATTCCCAG-T-CTAAGA
533 -CA-TCGT-CGAAG--CA-T--C-GTCGGAGAACCTGACT-GACG-GCATT-GGGGTTCCGACGA
*** ** * * * * * * ** * *
13038941 TCAGATAGAACCGAGGGTTGCGGCAGCACATGCTGTAC--TTGG-GCAAGTGCTGGTGCCACATT
586 TC-GGGGGGGCCGGGGGGTG-TGC-GCACATGATGTGCGATGGGTGCTGGTACTTG-GCC-C-TT
** * *** * * * * *** * **
13039003 -T-TT---CTTC-GTCGGGGCA-CCATCGTCG-GAGCATCACCGGAGAGCCTGACCGACGGCA-T
645 ATATTGGCCCCCTATC-CCTCATCAAACCTCGAGAAC-TCA-C--ACCCCCTTAAAGA--GCATT
* * * *** * *** * * * *
13039059 TGGGGTTCTGACGATAGGGGGGTCGGGGGGGTGCGCACATGATGTGCAATGGGTGCTGGTACAT-
703 TGAGATT-TTAC---AGGTTTG-C-TGCCAGT-AGC-C---AT-T--AAAGTGT-CT-G-AAATG
* * ** ** * ** * ** ** ***
13039123 -GG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCA
751 GGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC-
* * * * *
13039186 TTTGAGATTTTACAGGTT-TGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGCGGA-CACTTTTT
803 --TGA-ATTTT-----TTGTGCATGCCA--A--CA--AAAAT-AC---AA---GGATCACGTCTA
* * * * * * * ** * *** * *
13039248 TCAA--AT-GGTCACATAA-T-CTT--G--TACA-CTT--CGAGTTTTTAGCT
847 CCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
**** *** *** * **
13039289 G-AATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCA--A
1 GCAAAAAGTTTTGAAAAT--CGTGAAAAATAGAA--A--ACGAGT--C--GTCTT---GCCATGA
** *** ** * * ** * ***
13039350 AACTCCTTC-CGAAAAAATTTTAA---AAAAATCT-TGAACGATAAAAGGTTTCAAAAAT--CA-
53 AA---CTTCACG-TGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCAT-AAAAATGGCAT
* * * * * * * * *
13039407 TGGAAAATA-AAAAACG-AG-TCGTCTTGCCATGAAACTTCACGTGA--AGGCTTAAGGGACGAT
112 TGGCACATAGAAATATGAAGAT-G---TGCC-T-AAAC-CCACCT-ACCA-CCCT-A---TCGA-
** * ** * **** * * ** *
13039467 TGTATGAATTTACAAGCCATAAAAATGGTAT-TGGCATGCAGAAATATGAAGATGTGCCTAGACC
163 TCCACG-GCTTGC--G-CAT-CCCGT-CTCTCTGGCCGGC-G-----T----A-GTGCC-CG-CC
* ** * * * * ** * * ***
13039531 CACCTACCAGCATATCGATTC-ACGGCTTGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCC
209 CGCCCGCCCGC---TCGTTTCGTCGG-TTG-G--------CT-T-AGGCATACGGAGTTCATTCC
** * * ** * * * * *
13039595 C-GTCTGCTCGTTTC-G-TCGGTTGGCTTAGGCGTACGGGGTTCATTCCCAGTTTAAGATCAGAA
259 CAGTCT--AAG-ATCAGATC-G--GACCGAGG-GT-TGCGG--CA---GCAG-----GATCGGCA
* * ** * * ***
13039657 TGGAC-C-GAGGGTTGCGGCAACAGGATCGGCAGCACGCAGAGAGGGACCCAGCCGATCCTCGGC
306 -GCACGCAGA-AG--G-GG--ACCCGATC-G-ATC-C-CCG-GCTTG---C-G-C-ATCC-C-GC
* *** ** * * * **
13039720 TTACGCATCCCACCCCTCTG-GCCGACTG-AGCGCCCGTACGCTCGTTTCGTGGCCTGACTTAGG
351 ---C-CCT-CTGGCCGGCTGAG-CGCCCGCA-CGCTCGT--------TTCGTGGGTTGACTTAGG
* * * * * * * * *
13039783 TATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTTATTGCCAATCTAAGATCAGACTGAACT
401 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
** * * * **
13039848 GAGGGTTATGGCAGCACATGCTGGGCTTGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGC
466 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * *
13039913 ACCA---TC---G---C--CGGAGAACCTGACCGGCGGCATTGGGGTTCAGGCGATCGGTGGGGT
531 ACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* * **
13039967 CGGGGTGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGTTCCCCTAT
596 CGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
13040032 CCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
660 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* ** * *
13040097 CAGTAGTCACAAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACT
725 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
13040162 TCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACTAAGTT
790 TCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
13040227 TTGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
854 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
** ** * *
13040272 ATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * **
13040337 GGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATGTAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* *
13040402 GATGTGCCTAAACCCACCGACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
** * * * *
13040467 CGTAGTGCCCGCCCATCCGCCCGCTGGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTTCCA
196 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * *
13040532 GTCTAAGATTGGA-CTTGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAG-AGAGGGACCC
261 GTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAG-GGGACCC
* * * * * ** *
13040595 GATCGATCCTCGGCTTGCGCATCCTGCCCTTCTGGCCGACCGAGCGCCCTTACGCTCATTTCGTG
324 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *
13040660 GCTTGACTTAGGCATACGGAGTTCATTCCCAG-CATAATCATATGGAGTTCATTCCTAGTCTAAG
389 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
13040724 ATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTT
453 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
*
13040789 TCTTCATC-GGG-------G-C--A-CAT--T----G--CC-G---GACGGCATTGGGGTTCCGA
518 TCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGA
* * * *
13040830 TGATC-GGGGGGTCGAGAGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
583 CGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
13040894 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
13040959 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
13041024 GAATCTTGTACACCTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAA-AACCAATACAAGGAT
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA-AAATACAAGGAT
* * * *
13041088 CATGTCTACCAAGTTTGGGGCCAAAACTCGTTGCGAAAAAATTTTGAAAAA-TCTCGAACC
839 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC-CGAACC
* ** ** *
13041148 ACAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * * * ***
13041213 GTCTTAAAGGTCCTTTGTATGAATATACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * * *
13041278 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTACACATCCCGTCTCTCTGGCCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
13041343 CGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGCTTGTTTCGTCAGTTGGCTTAGGCATACAGAGTT
196 CGTAGTGCCCGCCCGCCCGCCCG--C--T--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
13041408 CATTCCCAGTCTAAGAT-AGGACCGAACTGAGGGTTACGGCACCAGGATTGGCAGCACGTAGAGG
253 CATTCCCAGTCTAAGATCA-GATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAG
* * ** * *
13041472 GGGACCC-AGCCGATCCCCGACTTATGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTC
317 GGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
13041536 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTACCA
381 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** * * * * *
13041601 GTCTAAGATCCAGATCATGACCGAGGGGTTTGCGACAAGCATATGCTGGGCTCGAGCTTTTGCTG
446 GTCTAAGAT-CGGA-CCGGACCGA-GGG-TTGCGGC-AGCACATGCTGGGCTCGGGCATGTGCTG
** * * * * *
13041666 GTGCCAAAATTTT-TTCGTTGGGGCA-C-T-GTC--A-C--C--CGGATAACCTGGGCCGACGGC
506 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCT-GACTGACGGC
* * *
13041720 ATTAGGGTTCCCCGACGATCGTGGGGGCCCGGGGGGGTGTGCGCACATGATATGCGATGGGTGCT
570 ATTGGGGTT--CCGACGATCG-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
13041785 GGTACTTGGCCCTTATAGTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
631 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
13041850 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
696 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
13041915 TTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAAC
761 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAC
* *
13041980 AAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
825 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
13042045 TCCCAAAAC
890 TTCCGAACC
* ** ** *
13042054 GTAAAAAGTTTCAAAAATTTTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
***
13042119 GGCTTAAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
66 GGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
* * * * * *
13042183 AGATGTGCCTAATCCCACCGACCACCCTATCGTTCCACGGCTCGCGCATTCCGTCTCTCTGGCCA
130 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
** * * *
13042248 GCGTAGTATCCGCCCGCTCGACCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
195 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
13042313 AGTGTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAG-AGAGGGACCC
260 AGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAG-GGGACCC
** * * * * *
13042377 GGCCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCCTTTCATG
324 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * *
13042442 AGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGACTCCATT-CCAGTCTAATA
389 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
13042506 TCAGACCAGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
454 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
*** * * * *
13042571 CTTTACCGGGGCACCATCG-CCAGAGCATTGTCGGAGAACCTGACTGACGGCATTAGGGTTCTGA
519 CTTCGTCGGGGCACCATCGTCGA-AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGA
*
13042635 CGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
583 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* ** *
13042700 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATGCTCCCTTAAAGAGCATTTGAGATTTTA
648 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
13042765 CAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
713 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
13042830 ATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATAAAAGGATGAC
778 ATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
13042895 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAA-TCTTGAACT
842 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC-CGAACC
** * * * *
13042952 GCAAAAAGTTTCAAAAATTGTGAAAAATATAAAACAAGTCGTCTT-CCTACGAAACTTCACGTGA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC-ATGAAACTTCACGTGA
* *
13043016 AGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGG-A-GTGCAGAAATAT
65 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATAT
** *
13043079 GAAGATGTGCCTAAA-CCACCTACCACCCTATCGATAGACGGCTTGCGGATCCCGTCTCTCTGGC
128 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * **
13043143 CGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACAAAGTTC
193 CGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** ** * * * * *
13043208 ATTCCCAGTCTAAGATTGGCCCAGACTGAGGGTTGCGTC-GACAAGATCGGCAGCACGCAGAGGG
254 ATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAG-CAGGATCGGCAGCACGCAGAAGG
* * * * *
13043272 GGACCCGA-CTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGGCGACTGAGTGCCTGCACGCTCG
318 GGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
13043336 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCGAGTCTAGGCATACGGAGTTCATTACCAG
382 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * ** * *
13043401 TCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACATGCTACGCTCGGGCATGTGGTGGTGCTG
447 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
13043466 AATTTTTCTTCATCGGGGCACCATCGTCG--G-A---T-----AAGCTGAC-CAGCGGCATTGGG
512 CATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGA-CGGCATTGGG
* * * * * * * *
13043519 GTTTCGATGATCGACGTGGACGGAGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTG
576 GTTCCGACGATCG-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
13043584 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA-CCCCTTAAAGAGCATTT
639 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
13043648 GAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGGAATGGTGACACTTTTTTTAAAT
704 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * **
13043713 GGTCACAAAATATTGTACCCTTCGAGTTCTTAGCTGAATTTTTTTATGCATGCCAATTAAAATAC
769 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATAC
* * * * * *
13043778 AAGGATCATGGCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAAT
833 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAAC
13043843 C
898 C
* ** * * *
13043844 GTAAAAAGTTTCAAAAATCGTGAGAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTAAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* ** ***
13043909 GGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATATCATTGGCATGCAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* *
13043974 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
13044039 CGTAGTGCCCGTCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGTA-TTCATTCCC
196 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCC
* ** * * * * * * * *
13044103 AGTCTAAGATC-GAACCAAACCAAGCGTTACGGTAGTAGGATCGGTAGCACGTAGAGGGGGACCC
260 AGTCTAAGATCAG-ATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCC
* * * * * * *
13044167 GACCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCTGCTGAGCGCCTGCACGCTTGTTTCATG
324 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
13044232 GGTTAACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
389 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
13044297 TCAGACTGGACCAACGATTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
454 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
13044362 CTTCGTCGGGGCACCA---T-------T-GTCGGAGAAGCTGACCGGCGGCCTTGGGGTT-CTAG
519 CTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGA-
* * * * *
13044415 CGAT-GAGGGGGGCCGAGCGGGGGGTTGCGCACAAGATGTGGGATGGCTGCTAGTACTTGGCCCT
583 CGATCG-GGGGGGCCG-G-GGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
13044479 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTCAGAT
644 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
13044544 TTTACAGGTTTGCTGCTAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
709 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
13044609 CAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTATGCATGCCAACAAAACTACAAGGA
774 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * ** ** *
13044674 TCATGGCTACCAAATTTGGCACCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACC
838 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
* * * *
13044735 GTAAAAAGTTTTGAACATCGTGAGAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
13044800 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-TCAAAAATATGA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT-AGAAATATGA
*
13044864 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCG
130 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* **
13044929 ACGTAGTGCCCGCCAGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCAT
195 GCGTAGTGCCCG-C---CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
13044994 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
256 TCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGA
* * *** * * * * *
13045059 CCCGACCGATCCCCGGCTTGCGCATCCCGGCCCTCTGGCTAACTGAACACCCACAAGCTCATTTC
321 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
13045124 GTGGGTTGAC-T-----TA--G-G--------CA---T-A-C--A--GAGTTCATTCCCAGTCTA
386 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
13045163 AGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGAATT
451 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** * * *
13045228 TTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCC
516 TTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCC
* * * * * *
13045293 GACGATTGGGGGGCCCGGGGGGTGTGCGCACATGATATACGATCGGTGCTGGTACTTGGCACTTA
581 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
13045358 TATTGGCCCCCTATCCCTCATCAAAGCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
13045423 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
13045488 AAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
13045553 ATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAA-TCCGGAACC
840 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCC-GAACC
* * ** *
13045612 ACAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGACACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
13045677 GGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * *
13045742 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTTGCCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
13045807 CGTAGTGCCTGCCCGCCCGCACGCCCGCCTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTT
196 CGTA--G--TGCCCGCCCGCCCGCCCG-CT-C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * ** * *
13045872 CATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGCGGTAGCAAGATCAACAGCACGTAGAGGG
253 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGG
* * * ** * * * * * * *
13045937 GGACTCGACCGATCCCCGGCTTGCCCATCCATCCCCTCTGGTCGGCGGAGCACTCGGAAGCTCAT
318 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * *
13046002 TTCGTGGGTTGACTTAGGCATGCCGAGTTCAATCCCAGTCAAAGCATACGGAGTTCATTCCCAGT
383 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * * ** * *
13046067 CTAAGATCAGATCAGACTGAGGGTTGTGGTAGCACATGCTAGGCTCGAACATGTGCTGGTGTCAC
448 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
13046132 ATTTTTCTTC-CCTGGGGCACCATCGTCTG-AGCATCGCCGGAGAACCTGACTGGCGGCATTGGT
513 ATTTTTCTTCGTC-GGGGCACCATCGTC-GAAGCATCGTCGGAGAACCTGACTGACGGCATTGGG
* *
13046195 GTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
576 GTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
13046260 CCCTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
640 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
13046325 AGATTTTACAGGTTTACTGCCAGTAGCCTTTAAAGTGTTTGAAATGGGGATACTTTTTTCAAATG
705 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
13046390 GTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACA
770 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACA
* *
13046455 AGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
834 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
* ** *
13046520 CCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* **
13046585 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCATGTAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * * * *
13046650 GATGTGCCTAAACCCACCTACCATCCTATCGATCCATGACTTACGCATCCCGTCTCTC-GACCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
13046714 CGTAGTACCCGCCCGCCCGCACGCCTGCCTGCTCGTTTCGTCGGTTGGCATAGGCATACCGAGTT
196 CGTAGT----GCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
13046779 CATTCTCAGTCTAACATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGG
253 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGG
* * * ** * * * *
13046844 GGACCCGGTTGATCCCTGGCTTGCGCATCTTGCCCCTTTGCCCGACTGAACGCCCGCACGCTCGT
318 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
13046909 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGT
383 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * ** * * * ** * *
13046974 CTAAGATCAGATCAAATCGAGGGTTGCTGCAGCACATACTGGGCTCGATCATGTGCAGGTGCCGT
448 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
13047039 ATTTTTCTTCGTCGGGGCACCATCGTCG--G-A-------A-AACCTGACCGACGGTATTAGGGT
513 ATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGT
* * *
13047093 TTCGGCGATCGGGGGGGCCGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
578 TCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
13047158 CTTATACTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
642 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * * * *
13047223 ATTTTATAGGTTTGCTACGAGTAGCCACTAAAGTGTTTGAAATAGGGACACTTTTTTTAAATGGT
707 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
13047288 CACAAAATCTTGTACACTCTC-AGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAA
772 CACAAAATCTTGTACACT-TCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAACAAAAATACAA
* **
13047352 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTGCAAAA-TCCTGAACC
835 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCC-GAACC
* * *
13047416 GTAAAAAGTTTCT-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTACCAAGAAACTTCACGTGA
1 GCAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * ***
13047480 AGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCGTTGGCATGCAGAAATATGA
65 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
* *
13047545 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTTTCTGGCCG
130 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * * * *
13047610 ACGTAGT----GCCTGCCTGCCCGCTCATTTCGTCGGTTGGCTTAAGCATATGAAGTTCGTTCCC
195 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * * * * * * *
13047671 AGTCTATGATCAGA-CTGGATTGAGGGTTGCGGTAGCAAGATCAGTAGTACCCGGAGGGGGACCC
260 AGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCC
* * * * * ** ** * * *
13047735 G-GCTGATCCCTGACTTGCGCATCCCACCCCTCTGCCCTACTGAGCTACCGCACGTTCATTTTGT
324 GATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * * *
13047799 GGGTTGACTTAGGCATACAGAGTTGATTCCCAATCTGAGCATACGGAGTTCATTCCCAGTCTAAG
388 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
13047864 ATCAGATCAGACCGAGGGTTGCGGTAGCACATGCTGAGCTCGAGCATGTGCTGGTGCCGTATTTT
453 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * ** * * * * *
13047929 TCTTCATCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGACGACATTAGGGTTTC-A
518 TCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGA
* * * *
13047993 GTGATCGGGGGGGCTGGGGGGGTGTGCGCACTTAATGTGCGATGGGTGCTGGTACTTGGCCCTTA
583 -CGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
13048058 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
13048123 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
13048188 AAATCTTGTACACTTCAAGTTTTTCGCTGAATTTTTTAG-GCATCCCAACAAAAATACAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-GTGCATGCCAACAAAAATACAAGGATC
* * *
13048252 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACC
840 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
** ** **
13048311 ATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATATGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * **
13048376 GGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAACAATGGCATTGGCATGTAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* *
13048441 GATGTGCCAAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
13048506 CGTAGTGCCCACCCGCCTACCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
196 CGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
13048571 CCCAGTCTAAGATAAGACCAGG-CTGAGGTTTGTGACAGCAGGATCGACAGTACGC--AA----A
257 CCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGA
* *
13048629 ---GA--GA------------G-A-CCCGCCCCTCTGGCAGGCTGAGCACCCGCACGCTCGTTTC
321 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * * * * * *
13048675 GTGGGTTAACTTTGGCACACGGAGTTCATTCCCAGTATATGCATACGAAGTTCATTCCAAGTATA
386 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * *
13048740 AGATTTGATCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
451 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * *
13048805 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACTTGA-TG-GGTAGCATTCGGGTT
516 TTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACG--GCATTGGGGTT
** * *
13048868 CCGACGATCGGGGGGTCGGAGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGAACTTGGCC
579 CCGACGATCGGGGGG--GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* ** *
13048933 CTTATATTGGCCCGCTATCCCTCATCAAACCTC-AGGAACTCACAATCCTTTAAAGAGCATTTGA
642 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGA
13048997 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
706 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
13049062 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAAGAAATATACAA
771 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAACAAAAATACAA
* * * * *
13049127 GGATCACGTCTACCAAGTTTGGGGACAAAACTCCATCCG-AAAGACTTTAAAAAAATCTCGAACC
835 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC-CGAACC
** * *
13049191 ATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
13049256 GGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* *
13049321 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGA
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
13049386 CGTAGT----GCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCA
196 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * *
13049447 TTCTAAGATCGGACCAGACC-ATGGGTTGTGGCAGCAGGATCTGCATCATGCAGAGGGGGACCCG
261 GTCTAAGATCAGATCGGACCGA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCG
* * * * * **
13049511 GTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTTGTTTCGTTC
325 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * *
13049576 GTTGACTTAAGCATACGGAGTTCATTCCTAGTTTAAGCATACGGAGTTCATTCCCAGTCAAAGAT
390 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
13049641 CGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGTATTTTTC
455 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *
13049706 ATCG-CTGGGGCACCATCGTCGAAGCATC-CCTGGAGAACCTGACCGGCGACATTGGGGTTCCGA
520 TTCGTC-GGGGCACCATCGTCGAAGCATCGTC-GGAGAACCTGACTGACGGCATTGGGGTTCCGA
* * ** *
13049769 TGATC-GGGGGGCCGAGCGGGATGTGCATAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
583 CGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
** * *
13049833 TATTGG-CCCCTATCCCTCATCAAATTTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
13049897 TACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
13049962 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATC
* *
13050027 ACGTCTACCAAGTTTGAGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAA-TCCTGAACC
840 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCC-GAACC
* * * * * * *
13050086 ACAAAAAGTTTTAAAAATTGTGAAAAATAGCAAACGAGTCATCTTGTCGTGAAACTTCACGTGAA
1 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
13050151 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTGGCACATAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * ** *
13050216 GATGTGCCTGAACCCACCTACCACCTTATCGATCCATTGCTTGTGCATCCCGTCTCTCTGGCCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
13050281 CATACTGCTCGCCCGCCCGCCTGCCCGCTC-ATTCGTCGGTTGGCTTAGGCATATGGAGTTCATT
196 CGTA--G-T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** * * * * * ** ** *
13050345 CCCAGTCTAAGATTGGACCCGACCGATGGTTGTGGCAGCAGGCTCAACAGTGCGCAGAGGGGGAC
257 CCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGAC
* * * *** * * *
13050410 CTGACCGATCCCCAGCTTGTAAATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACCGCTTGTTTT
322 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA-CGCTCGTTTC
* * *
13050475 GTGGGTTAACTTAGCCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
386 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
13050540 AGATCAGACTGGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGTCATGTGCTGGTGCCGCATT
451 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
13050605 TTTCTTTGTCGGGGCACCATCG-CGGAAGTATCGTCGAAGAACCTGAC-CAGCGGCATTGGGGTT
516 TTTCTTCGTCGGGGCACCATCGTC-GAAGCATCGTCGGAGAACCTGACTGA-CGGCATTGGGGTT
*
13050668 CCGACGAT-AGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
579 CCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
13050732 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTCAAAGAGCATTTGAGA
643 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
13050797 TTTTACAGGTTTGCTGCCAGTAGCC-TGTAAAGTGTCTGAAATGGGGACTCTTTTTTCAAATGGT
708 TTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
13050861 CACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGTATGCCTACAAAAATACAAG
772 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
13050926 GATCACGTCTACCAGGTTTGGGGCAAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACC
836 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
** * *
13050989 ATAAAAAG-TTTCAACAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGA
1 GCAAAAAGTTTTGAA-AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
13051052 AGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
65 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
* * ** * * *
13051117 AGAGGTGCCTAAACCCAGCTACCACCCTATCGATCCATAGCTTGTGCATCGCGTCTATCTGGCCG
130 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
13051182 GCATAGTGCCCGCCCACCCATCCGCCC-CTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
195 GCGTAGTGCCCG-CC-CGC--CCGCCCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *
13051246 TTCCCAGTCTAACATCGGA-CTAGACCGAGGGTTGC
255 TTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGC
13051281 AGTAGCACAT
Statistics
Matches: 19882, Mismatches: 3584, Indels: 2605
0.76 0.14 0.10
Matches are distributed among these distances:
865 115 0.01
866 524 0.03
867 1 0.00
868 1 0.00
869 93 0.00
870 97 0.00
871 8 0.00
872 80 0.00
873 4 0.00
874 3 0.00
875 217 0.01
876 497 0.02
877 465 0.02
878 213 0.01
879 216 0.01
880 294 0.01
881 176 0.01
882 6 0.00
883 11 0.00
884 207 0.01
885 725 0.04
886 595 0.03
887 173 0.01
888 36 0.00
889 483 0.02
890 580 0.03
891 1445 0.07
892 842 0.04
893 497 0.02
894 459 0.02
895 961 0.05
896 1290 0.06
897 783 0.04
898 847 0.04
899 1129 0.06
900 391 0.02
901 414 0.02
902 625 0.03
903 735 0.04
904 21 0.00
905 17 0.00
906 471 0.02
907 482 0.02
908 462 0.02
909 449 0.02
910 14 0.00
911 7 0.00
912 1 0.00
913 7 0.00
914 1 0.00
915 6 0.00
917 2 0.00
918 1 0.00
919 5 0.00
920 7 0.00
921 1 0.00
923 5 0.00
924 6 0.00
925 7 0.00
926 9 0.00
927 11 0.00
928 14 0.00
929 3 0.00
930 6 0.00
931 2 0.00
932 5 0.00
933 6 0.00
934 14 0.00
935 12 0.00
936 13 0.00
937 8 0.00
938 9 0.00
939 17 0.00
940 12 0.00
941 21 0.00
942 11 0.00
943 5 0.00
944 17 0.00
945 2 0.00
946 9 0.00
947 12 0.00
948 3 0.00
949 9 0.00
950 3 0.00
951 21 0.00
952 5 0.00
953 21 0.00
954 6 0.00
955 2 0.00
956 3 0.00
957 19 0.00
958 18 0.00
959 17 0.00
960 10 0.00
961 9 0.00
962 21 0.00
963 22 0.00
964 21 0.00
965 8 0.00
966 25 0.00
967 14 0.00
968 12 0.00
969 1 0.00
970 4 0.00
971 18 0.00
972 23 0.00
973 14 0.00
974 25 0.00
975 17 0.00
976 10 0.00
977 6 0.00
978 11 0.00
979 1 0.00
980 5 0.00
981 5 0.00
982 17 0.00
983 9 0.00
984 15 0.00
985 2 0.00
986 12 0.00
987 19 0.00
988 14 0.00
989 7 0.00
990 10 0.00
991 9 0.00
992 2 0.00
993 8 0.00
994 7 0.00
995 8 0.00
996 10 0.00
997 3 0.00
998 10 0.00
999 12 0.00
1000 7 0.00
1001 11 0.00
1002 18 0.00
1003 17 0.00
1004 12 0.00
1005 7 0.00
1006 12 0.00
1007 21 0.00
1008 23 0.00
1009 21 0.00
1010 14 0.00
1011 23 0.00
1012 18 0.00
1013 25 0.00
1014 33 0.00
1015 51 0.00
1016 42 0.00
1017 37 0.00
1018 16 0.00
1019 30 0.00
1020 26 0.00
1021 13 0.00
1022 8 0.00
1023 3 0.00
1024 56 0.00
1025 40 0.00
1026 73 0.00
1027 56 0.00
1028 49 0.00
1029 45 0.00
1030 55 0.00
1031 61 0.00
1032 66 0.00
1033 76 0.00
1034 62 0.00
1035 64 0.00
1036 40 0.00
1037 30 0.00
1038 29 0.00
1039 23 0.00
1040 28 0.00
1041 24 0.00
1042 36 0.00
1043 43 0.00
1044 30 0.00
1045 33 0.00
1046 4 0.00
1047 10 0.00
1048 13 0.00
1049 23 0.00
1050 27 0.00
1051 13 0.00
1052 18 0.00
1053 16 0.00
1054 49 0.00
1055 21 0.00
1056 13 0.00
1057 12 0.00
1058 9 0.00
1059 28 0.00
1060 24 0.00
1061 38 0.00
1062 11 0.00
1063 93 0.00
1064 45 0.00
1065 47 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGA
TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGA
TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCGAACC
Found at i:13028717 original size:26 final size:26
Alignment explanation
Indices: 13028676--13028733 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
13028666 CGTGGGTTGA
*
13028676 CTAAGGCATATAGAGTTCATTCCCGGT
1 CTAA-GCATATAGAGTTCATTCCCAGT
*
13028703 CTAAGCATATGGAGTTCATTCCCAGT
1 CTAAGCATATAGAGTTCATTCCCAGT
13028729 CTAAG
1 CTAAG
13028734 ATCAGACTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
CTAAGCATATAGAGTTCATTCCCAGT
Found at i:13030496 original size:26 final size:26
Alignment explanation
Indices: 13030446--13030498 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13030436 GTTGACTTAG
* **
13030446 GCATACGGAGTTCAATCCCCTTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
13030472 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
13030498 G
1 G
13030499 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:13031382 original size:26 final size:26
Alignment explanation
Indices: 13031352--13031401 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13031342 AACTTAGGCG
*
13031352 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
13031378 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
13031402 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:13032048 original size:4 final size:4
Alignment explanation
Indices: 13032039--13032064 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
13032029 CCGACGTAGT
13032039 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
13032065 TCGTTTCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:13032281 original size:26 final size:26
Alignment explanation
Indices: 13032245--13032295 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13032235 CTTGACTTAG
13032245 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13032271 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
13032296 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13033178 original size:26 final size:26
Alignment explanation
Indices: 13033142--13033194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13033132 GTTGACTTAG
*
13033142 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13033168 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13033194 G
1 G
13033195 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13034072 original size:26 final size:26
Alignment explanation
Indices: 13034036--13034088 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13034026 GTTGACTTAG
*
13034036 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13034062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13034088 G
1 G
13034089 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13034973 original size:26 final size:26
Alignment explanation
Indices: 13034937--13034989 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13034927 GTTGACTTAG
13034937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13034963 GCATGCGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13034989 G
1 G
13034990 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13035862 original size:26 final size:26
Alignment explanation
Indices: 13035823--13035875 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13035813 GTTGACTTTG
13035823 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
13035849 GCATACGAAA-TTCATTCCCAGTCTAA
1 GCATAC-AAAGTTCATCCCCAGTCTAA
13035875 G
1 G
13035876 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:13037412 original size:26 final size:26
Alignment explanation
Indices: 13037376--13037427 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13037366 CTTGACTTAG
13037376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13037402 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13037428 TATCAAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13038923 original size:26 final size:26
Alignment explanation
Indices: 13038887--13038939 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13038877 GTTGACTTAG
13038887 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13038913 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13038939 G
1 G
13038940 ATCAGATAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13039916 original size:895 final size:891
Alignment explanation
Indices: 13038071--13051280 Score: 16073
Period size: 895 Copynumber: 14.8 Consensus size: 891
13038061 CGCCTGCCTT
* * * * *
13038071 GGCTCGGGCATGTGCTGTTGCCACATTTTTCTTCGAT-GGGGCACCATCGCCAGAGCATCGCCAG
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGGCACCATCGTC-GAGCATC-CCGG
*
13038135 AGAACCTGACCGACGGCATTGGGGTT-TCGACGATCAGGGGGGCCGAGCGGGGGGGTGCGCACAT
63 AGAACCTGACCGACGGCATTGGGGTTCT-GACGATC-GGGGGGCC--G-GGGGGTGTGCGCACAT
* *
13038199 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGT
123 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* **
13038264 ACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTAAAGTGTC
188 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* ** *
13038329 TGAAATGGGGACATTTTTTTGTAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATT
253 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
13038394 TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTC
318 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
** ** * * *
13038458 GAAAAAATTTTAAAAAATCTTGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAAAAAACGTGT
383 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
13038523 TGTCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
448 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
13038588 ATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
513 ATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
13038652 GCTTGCGCATCCCGTCTCTCTGGTCGACGAAGTGCCCGCCGGCCCGCCCGCCCGCTTATTTCATC
577 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCTCG----TTTCGTC
* * * ** * * * * *
13038717 GGCTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATTGGATCGGACCAAGGGTTGCAGCAC
634 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * * * *
13038782 CAGGATCGACAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTACGCATCCTGCCCCTCTGAC
699 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
13038847 CGGCTGAGCACACGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
764 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
13038912 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGATAGAACCGAGGGTTGCGGCAGCACATGCTG
829 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-GAACCGAGGGTTGCGGCAGCACATGCTG
** * * * * *
13038976 TACTTGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATC-CCGGA
* * *
13039041 GAGCCTGACCGACGGCATTGGGGTTCTGACGATAGGGGGGTCGGGGGG-GTGCGCACATGATGTG
64 GAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
13039105 CAATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
129 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13039170 ACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
194 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13039235 GCGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
259 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
13039300 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
323 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * * * *
13039365 AATTTTAAAAAAATCTTGAACGATAAAAGGTTTCAAAAATCATGGAAAATAAAAAACGAGTCGTC
388 AATTTT-AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
13039430 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGG
452 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
13039495 TATTGGCATGCAGAAATATGAAGATGTGCCTAGACCCACCTACCAGCATATCGATTCACGGCTTG
517 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
13039560 TGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGC
582 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *** *
13039625 GTACGGGGTTCATTCCCAGTTTAAGATCAGAATGGACCGAGGGTTGCGGCAACAGGATCGGCAGC
647 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * *
13039690 ACGCAGAGAGGGACCC-AGCCGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCC
712 ACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* ** * *
13039754 CGTACGCTCGTTTCGTGGCCTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
776 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * **
13039819 TTATTGCCAATCTAAGATCAGACTGAACTGAGGGTTATGGCAGCACATGCTG
841 TCATTCCCAGTCTAAGATCAGA-TGAACCGAGGGTTGCGGCAGCACATGCTG
* * *
13039871 GGCTTGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC--G----CCGGAGA
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCCCGGAGA
* * * * *
13039927 ACCTGACCGGCGGCATTGGGGTTCAGGCGATCGGTGGGGTCGGGGTGGTGTGCGCACAAGATGTG
66 ACCTGACCGACGGCATTGGGGTTCTGACGATCGG-GGGGCCGGGG-GGTGTGCGCACATGATGTG
* **
13039992 CAATGGGTGCTGGTACTTGGCCCTTATATTGTTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
129 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * ** *
13040057 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCACAAAAGTGTTTGAAAT
194 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13040122 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
259 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
13040187 TGCATGCCAACAAAAATACAAGGATCACATCTACTAAGTTTTGGGCCAAAACCCCTTCCGAAAAA
324 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
13040252 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
389 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
13040317 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCA
454 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
13040382 TCGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGACTTGCG
519 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
13040447 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCCGCCCGCTGGTTTCATCGGTTGGCTTAG
584 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** ** * *
13040512 GCATACGGAGTTTATTTCCAGTCTAAGATTGGACTTGACCGAGGGTTGTGGCAGTAGGATCGGCA
645 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
13040577 GCACGCAGAGAGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCTTCTGGCCGACCGAGCGC
710 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
** * * * *
13040642 CCTTACGCTCATTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAG-CATAATCATATGGA
775 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-TAAGCATACGGA
* * * *
13040706 GTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTG
839 GTTCATTCCCAGTCTAAGATCAGA-TGAACCGAGGGTTGCGGCAGCACATGCTG
*
13040760 GGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCA-CA---T------T------G-
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCCCGGAGA
* * * *
13040808 -CC-G---GACGGCATTGGGGTTCCGATGATCGGGGGGTCGAGAGGGGTGTGCACACATGATGTG
66 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCG-G-GGGGTGTGCGCACATGATGTG
*
13040868 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
129 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13040933 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
194 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13040998 GGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACCTCGAGTTTTTGGCTGAATTTTTTTG
259 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
13041063 TGCATGCCAA-AACCAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCGTTGCGAAAA
324 TGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * **
13041127 AATTTTGAAAAATCTCGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
388 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * * *
13041192 TGCCATGAAACTTCAGGTGAAGTCTTAAAGGTCCTTTGTATGAATATACAAGCCATAAAAATGGC
453 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13041257 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTAC
518 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
13041322 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGCTTGTTTCGTCAG
583 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCG--C--T--C--GTTTCGTCGG
* * * *
13041387 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-AGGACC-GAACTGAGGGTTACGGCAC
636 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAG-ACCGAGGGTTGCGGCAG
* * * **
13041450 CAGGATTGGCAGCACGTAGAGGGGGACCC-AGCCGATCCCCGACTTATGCATCCCGCCCCTCTGG
699 CAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
13041514 CCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
763 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
13041579 AAGCATATGGAGTTCATTACCAGTCTAAGATCCAGATCATGACCGAGGGGTTTGCGACAAGCATA
828 AAGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGATGA--ACCGA-GGG-TTGCGGC-AGCACA
13041644 TGCTG
887 TGCTG
* * ** * * * *
13041649 GGCTCGAGCTTTTGCTGGTGCCAAAATTTT-TTCGTTGGGGCA-C-T-GT----CA-CCCGGATA
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCCCGGAGA
* * *
13041705 ACCTGGGCCGACGGCATTAGGGTTCCCCGACGATCGTGGGGGCCCGGGGGGGTGTGCGCACATGA
66 ACCT-GACCGACGGCATTGGGGTT--CTGACGATCG-GGGGG-CC-GGGGGGTGTGCGCACATGA
* * * *
13041770 TATGCGATGGGTGCTGGTACTTGGCCCTTATAGTGGCTCCCTATCCCTCATCAAACCTTGAGAAC
125 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
13041835 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTA
190 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
13041900 AAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTGT
255 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
13041965 TTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
320 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * **
13042030 AAAAATTTTAAAAAATCCCAAAACGTAAAAAGTTTCAAAAATTTTGAAAAATAGAAAACGAGTCG
385 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
13042095 TCTTGCCAAGAAACTTCACGTGAAGGCTTAAAGGG-CCATTGTATGAATTTACAAGCCATAAAAA
450 TCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
13042159 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAATCCCACCGACCACCCTATCGTTCCACGGC
514 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
13042224 TCGCGCATTCCGTCTCTCTGGCCAGCGTAGTATCCGCCCGCTCGACCGCTCGTTTCATCGGTTGG
579 TTGCGCATCCCGTCTCTCTGGCCGGCGTAG--T--GCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
13042289 CTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGAT
640 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
13042354 CGACAGCACGTAGAGAGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCAGGCTG
705 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * * *
13042419 AGCGCCCGCACGCTCCTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTA
770 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * ** * *
13042484 CGGACTCCATT-CCAGTCTAATATCAGACCAGATCGAGGGTTGCGGTAGCACATGCTG
835 CGGAGTTCATTCCCAGTCTAAGATCAGATGA-ACCGAGGGTTGCGGCAGCACATGCTG
* * * * * **
13042541 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCGCCAGAGCATTGTCGGA
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCA-TCCCGGA
* * *
13042606 GAACCTGACTGACGGCATTAGGGTTCTGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGT
64 GAACCTGACCGACGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
*
13042671 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
128 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * *
13042736 TGCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAA
193 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
13042801 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTT
258 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
13042866 GTGCATGCCAACAAAAATAAAAGGATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
323 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** *** * * *
13042931 AACTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATTGTGAAAAATATAAAACAAGTCGTCT
388 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
13042996 T-CCTACGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
453 TGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
13043060 CATTGG-AGTGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATAGACGGCTT
517 CATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
13043123 GCGGATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTTGTTTCGTTGGTT
581 GCGCATCCCGTCTCTCTGGCCGGCGTA--G--T----GCCCGCCCGCCCGCTCGTTTCGTCGGTT
** ** * * * *
13043188 GGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATTGGCCCAGACTGAGGGTTGCGTC-GACAA
638 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG-CAG
* * *
13043252 GATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGGCGA
702 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * * *
13043317 CTGAGTGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCGAGTCTAGGC
767 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
13043382 ATACGGAGTTCATTACCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACATGCTA
832 ATACGGAGTTCATTCCCAGTCTAAGATCAGATGA-ACCGAGGGTTGCGGCAGCACATGCTG
* * * * *
13043443 CGCTCGGGCATGTGGTGGTGCTGAATTTTTCTTCATCGGGGCACCATCGTCG-G-AT-------A
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCCCGGAGA
* * * * * *
13043499 AGCTGACC-AGCGGCATTGGGGTT-TCGATGATCGACGTGGACGGAGGGGGTGTACGCACATGAT
66 ACCTGACCGA-CGGCATTGGGGTTCT-GACGATCG--GGGGGCCG-GGGGGTGTGCGCACATGAT
* *
13043562 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACT
126 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
13043627 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGG
191 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
13043691 AATGGTGACACTTTTTTTAAATGGTCACAAAATATTGTACCCTTCGAGTTCTTAGCTGAATTTTT
256 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * * *
13043756 TTATGCATGCCAATTAAAATACAAGGATCATGGCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
321 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
13043821 AAAATTTTAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCGTGAGAAATAGAAAGCGAGTCGT
386 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
13043886 CTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATA
451 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
13043951 TCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
516 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
13044016 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGTCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
581 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
13044081 TAGGCATACGGTA-TTCATTCCCAGTCTAAGATC-GAACCAAACCAAGCGTTACGGTAGTAGGAT
642 TAGGCATACGG-AGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * *
13044144 CGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCTG-CT
705 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GACT
* * * * *
13044208 GAGCGCCTGCACGCTTGTTTCATGGGTTAACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCAT
769 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
13044273 ACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAACGATTGCGGCAGCACATGCTG
834 ACGGAGTTCATTCCCAGTCTAAGATCAGA-TGAACCGAGGGTTGCGGCAGCACATGCTG
* *
13044332 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--T---G--T--CGGAGA
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCCCGGAGA
* * * * * *
13044388 AGCTGACCGGCGGCCTTGGGGTTCT-AGCGATGAGGGGGGCCGAGCGGGGGGTTGCGCACAAGAT
66 ACCTGACCGACGGCATTGGGGTTCTGA-CGAT-CGGGGGGCCG-G-GGGGTG-TGCGCACATGAT
* * * *
13044452 GTGGGATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
126 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
13044517 CACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGCAGCCATTAAAGTGTCTGA
191 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
13044582 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTT
256 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * ** **
13044647 TTATGCATGCCAACAAAACTACAAGGATCATGGCTACCAAATTTGGCACCAAAACTCCTTCTAAA
321 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * *
13044712 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAACATCGTGAGAAATAGAAAGCGAGTCGT
386 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
13044777 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
451 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13044842 GCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
516 GCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
13044906 TGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGTCCGCCCGCCCGCTCGTTTCGTCGGT
580 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G-C---CCGCCCGCCCGCTCGTTTCGTCGGT
** * * *
13044971 TGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAG
637 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* **
13045036 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGGCCCTCTGGCTAA
702 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * * * *
13045101 CTGAACACCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-
767 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
13045165 AT-C-G-G---A---CC-G-----GA-C---T-----GAGGGTTGCGGCAGCACATGCTG
832 ATACGGAGTTCATTCCCAGTCTAAGATCAGATGAACCGAGGGTTGCGGCAGCACATGCTG
* * *
13045201 GGCTCGGGCATGTGCTGGTGCAGAATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGA
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATC-CCGGA
* * * * *
13045266 GAACCTGACCGGCGACATTGGGGTTCCGACGATTGGGGGGCCCGGGGGGTGTGCGCACATGATAT
64 GAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGT
* * * * *
13045331 ACGATCGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAAGCTGGAGAACTCA
128 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13045396 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
193 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13045461 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
258 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
13045526 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAA
323 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
13045591 AATTTTAAAAAATCCGGAACCACAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
388 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
13045656 TGCCATGACACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGC
453 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
13045721 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGT
518 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
13045786 GCATCCCGTCTCTCTTGCCGGCGTAGTGCCTGCCCGCCCGCACGCCCGCCTGCTTGTTTCATCGG
583 GCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG--C-C-CGCCCG-CT-C--GTTTCGTCGG
* *
13045851 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGCGGTAGCA
636 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* ** * * * ** *
13045916 AGATCAACAGCACGTAGAGGGGGACTCGACCGATCCCCGGCTTGCCCATCCATCCCCTCTGGTCG
701 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * * * * * *
13045981 GCGGAGCACTCGGAAGCTCATTTCGTGGGTTGACTTAGGCATGCCGAGTTCAATCCCAGTCAAAG
766 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
13046046 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGTAGCACATGCTA
831 CATACGGAGTTCATTCCCAGTCTAAGATCAGATGA-ACCGAGGGTTGCGGCAGCACATGCTG
* * * *
13046108 GGCTCGAACATGTGCTGGTGTCACATTTTTCTTC-CCTGGGGCACCATCGTCTGAGCATCGCCGG
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTC-GAGCATC-CCGG
* * * *
13046172 AGAACCTGACTGGCGGCATTGGTGTT-TCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGA
63 AGAACCTGACCGACGGCATTGGGGTTCT-GACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGA
*
13046236 TGTGCGATGGGTGCTGGTACTTGGCCCTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
125 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
13046301 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCTTTAAAGTGTTTG
190 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
13046366 AAATGGGGATACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
255 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
13046431 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGA
320 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
**
13046496 AAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
385 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
13046561 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
450 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
13046626 GTCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGACT
515 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
13046691 TACGCATCCCGTCTCTC-GACCGGCGTAGTACCCGCCCGCCCGCACGCCTGCCTGCTCGTTTCGT
580 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-C-CG-C--CC-GCTCGTTTCGT
* * * * *
13046755 CGGTTGGCATAGGCATACCGAGTTCATTCTCAGTCTAACATCAGACCAGACCGAGGGTTGCAGCA
633 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
* *** * ** * *
13046820 GCAGGATCAGCAGCACGCAGAGGGGGACCCGGTTGATCCCTGGCTTGCGCATCTTGCCCCTTTGC
698 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
13046885 CCGACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
763 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
13046950 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAATCGAGGGTTGCTGCAGCACATACTG
828 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-GAACCGAGGGTTGCGGCAGCACATGCTG
* * * *
13047015 GGCTCGATCATGTGCAGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCG-G-A------A-A
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCCCGGAGA
* * * *
13047071 ACCTGACCGACGGTATTAGGGTT-TCGGCGATCGGGGGGGCCGAAGGGGTGTGCGCACATGATGT
66 ACCTGACCGACGGCATTGGGGTTCT-GACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * *
13047135 GCGATGGGTGCTGGTACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
128 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
13047200 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACGAGTAGCCACTAAAGTGTTTGAAA
193 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13047265 TAGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTCTC-AGTTTTTAGCTGATTTTTTT
258 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTT
*
13047329 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
322 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * * *
13047394 AAATTTTGCAAAATCCTGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTC
387 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
13047459 TTACCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGG
452 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
13047524 CGTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
517 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
13047589 CGCATCCCATCTTTCTGGCCGACGTAGTGCCTGCCTGCCCGCTCATTTCGTCGGTTGGCTTAAGC
582 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * ** ** * * * * *
13047654 ATATGAAGTTCGTTCCCAGTCTATGATCAGACTGGATTGAGGGTTGCGGTAGCAAGATCAGTAGT
647 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * * * **
13047719 ACCCGGAGGGGGACCCGGCTGATCCCTGACTTGCGCATCCCACCCCTCTGCCCTACTGAGCTACC
712 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
* * * * * * *
13047784 GCACGTTCATTTTGTGGGTTGACTTAGGCATACAGAGTTGATTCCCAATCTGAGCATACGGAGTT
777 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
13047849 CATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATGCTG
842 CATTCCCAGTCTAAGATCAGATGA-ACCGAGGGTTGCGGCAGCACATGCTG
* * *
13047900 AGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCAGA
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATC-CCGGA
* * * * * * *
13047965 GAACCTGACCGACGACATTAGGGTT-TCAGTGATCGGGGGGGCTGGGGGGGTGTGCGCACTTAAT
64 GAACCTGACCGACGGCATTGGGGTTCTGA-CGATC-GGGGGGC-CGGGGGGTGTGCGCACATGAT
*
13048029 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
126 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
13048094 CACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
191 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
13048159 AATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCAAGTTTTTCGCTGAATTTTT
256 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
13048224 TAG-GCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
321 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
13048288 AAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
386 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
** * *
13048353 CTTGCCATGAAACTTCATATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAACAATG
451 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13048418 GCATTGGCATGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCTACGGCTT
516 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
13048483 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCTACCCGCTCGCTTGTTTCGTCGGTT
581 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCT--C--GTTTCGTCGGTT
* * * * * * *
13048548 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGGCTGAGGTTTGTGACAGCAGG
638 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * *
13048613 ATCGACAGTACGCA-A-----A---GA--GA------------G-A-CCCGCCCCTCTGGCAGGC
703 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * * *
13048653 TGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTTGGCACACGGAGTTCATTCCCAGTATATGCA
768 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * ** * * *
13048718 TACGAAGTTCATTCCAAGTATAAGATTTGATCGGACCGAGGGTTACAGCAGCACATGCTG
833 TACGGAGTTCATTCCCAGTCTAAGATCAGAT-GAACCGAGGGTTGCGGCAGCACATGCTG
* * *
13048778 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
1 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATC-CCGGA
* ** *** * * *
13048843 GAACTTGATGGGTAGCATTCGGGTTCCGACGATCGGGGGGTCGGAGGGGGGTGTGCGCACATGAT
64 GAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGG-C--CGGGGGGTGTGCGCACATGAT
* * *
13048908 TTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTC-AGGAAC
126 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAAC
** *
13048972 TCACAATCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
190 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
13049037 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
255 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
13049102 TTTATGCATGCCAAGAAATATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCATCCGA
320 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * ** * *
13049167 AAGACTTTAAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTG
385 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
13049232 TCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
450 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
***
13049297 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
515 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
13049362 TACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTAG
580 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
13049427 GCATACAGAGTTCATTCCCATTCTAAGATCGGACCAGACC-ATGGGTTGTGGCAGCAGGATCTGC
645 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTGCGGCAGCAGGATCGGC
* * ** *
13049491 ATCATGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
709 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * ** * * *
13049556 CCCACACGCTTGTTTCGTTCGTTGACTTAAGCATACGGAGTTCATTCCTAGTTTAAGCATACGGA
774 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
13049621 GTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTG
839 GTTCATTCCCAGTCTAAGATCAGA-TGAACCGAGGGTTGCGGCAGCACATGCTG
* * *
13049675 GGCTCG-GCCATGTGCTGGTGCCGTATTTTTCATC-GCTGGGGCACCATCGTCGAAGCATCCCTG
1 GGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCG-AGCATCCC-G
* * * * * ** *
13049738 GAGAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGCCGAGCGGGATGTGCATAAATGA
62 GAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCG-G-GGGGTGTGCGCACATGA
** *
13049803 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAATTTCAAGAAC
125 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
13049867 TCACACCCCCTTAAAAAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
190 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
13049932 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
255 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
13049997 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAGTCCTTCCGA
320 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * * *
13050062 AAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATTGTGAAAAATAGCAAACGAGTCA
385 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
13050127 TCTTGTCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAG
450 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * * **
13050192 GGCATTGGCACATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCTTATCGATCCATTGCT
515 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
13050257 TGTGCATCCCGTCTCTCTGGCCGGCATACTGCTCGCCCGCCCGCCTGCCCGCTCATTCGTCGGTT
580 TGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCCGCTCG-T--TTCGTCGGTT
* ** * * *
13050322 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCCGACCGATGGTTGTGGCAGCAGG
638 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* ** ** * * *** *
13050387 CTCAACAGTGCGCAGAGGGGGACCTGACCGATCCCCAGCTTGTAAATCCCGCCCCTCTGGCCGGC
703 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * * *
13050452 TGAGCGCCCGTACCGCTTGTTTTGTGGGTTAACTTAGCCATAGGGAGTTCATTCCCAGTCTAAGC
768 TGAGCGCCCGCA-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
13050517 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAGCACATGCTA
832 ATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGAACCGAGGGTTGCGGCAGCACATGCTG
** * *
13050578 GGCTCG-GTCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCG-CGGAAGTATCGTCG
1 GGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-G-AGCATC-CCG
* * *
13050641 AAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGGTGTGCGCACATGA
62 GAGAACCTGACCGA-CGGCATTGGGGTTCTGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGA
13050705 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
125 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
13050770 GCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-TGTAAAGTGTCT
190 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCT
* * *
13050834 GAAATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTT
254 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
13050899 TTTTGTGTATGCCTACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCAAAAAATCCTTCTG
319 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
13050964 AAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAACAATCGTG-AAAATAGAAAACGAGTC
384 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
13051028 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAA
449 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * **
13051093 TGGCATTGGCACACAGAAATATGAAGAGGTGCCTAAACCCAGCTACCACCCTATCGATCCATAGC
514 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
13051158 TTGTGCATCGCGTCTATCTGGCCGGCATAGTGCCCGCCCACCCATCCGCCCCTTCGTTTCGTCGG
579 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CGC--CCG---C-TCGTTTCGTCGG
* * * *
13051223 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAACATCGGACTAGACCGAGGGTTGC
636 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
13051281 AGTAGCACAT
Statistics
Matches: 10726, Mismatches: 1292, Indels: 576
0.85 0.10 0.05
Matches are distributed among these distances:
869 64 0.01
871 2 0.00
872 74 0.01
873 4 0.00
874 2 0.00
875 11 0.00
876 494 0.05
877 466 0.04
878 205 0.02
879 214 0.02
880 309 0.03
881 180 0.02
882 3 0.00
883 5 0.00
884 235 0.02
885 491 0.05
886 83 0.01
887 197 0.02
888 35 0.00
889 616 0.06
890 86 0.01
891 412 0.04
892 357 0.03
893 153 0.01
894 12 0.00
895 1134 0.11
896 779 0.07
897 286 0.03
898 604 0.06
899 38 0.00
900 212 0.02
901 276 0.03
902 458 0.04
903 777 0.07
904 13 0.00
905 96 0.01
906 473 0.04
907 398 0.04
908 466 0.04
909 1 0.00
910 4 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCCCGGAGA
ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGATGAACCGAGGGTTGCGGCAGCACATGCTG
Found at i:13041584 original size:26 final size:26
Alignment explanation
Indices: 13041555--13041607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13041545 GTTGACTTAG
*
13041555 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
13041581 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
13041607 G
1 G
13041608 ATCCAGATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:13043381 original size:26 final size:26
Alignment explanation
Indices: 13043351--13043404 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
13043341 TGGGTTGACT
13043351 TAGGCATACGGAGTTCATT-CCGAGTC
1 TAGGCATACGGAGTTCATTACC-AGTC
13043377 TAGGCATACGGAGTTCATTACCAGTC
1 TAGGCATACGGAGTTCATTACCAGTC
13043403 TA
1 TA
13043405 AGATCGGATC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTACCAGTC
Found at i:13044280 original size:26 final size:26
Alignment explanation
Indices: 13044246--13044295 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13044236 AACTTAGGCG
*
13044246 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
13044272 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
13044296 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:13046956 original size:26 final size:26
Alignment explanation
Indices: 13046926--13046978 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13046916 GTTGACTTAG
13046926 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13046952 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13046978 G
1 G
13046979 ATCAGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13050526 original size:26 final size:26
Alignment explanation
Indices: 13050490--13050541 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13050480 TTAACTTAGC
*
13050490 CATAGGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13050516 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13050542 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13051221 original size:903 final size:902
Alignment explanation
Indices: 13045138--13051280 Score: 7906
Period size: 896 Copynumber: 6.8 Consensus size: 902
13045128 GTTGACTTAG
* * * *
13045138 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
13045203 CTCGGGCATGTGCTGGTGCAGAATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
13045268 ACCTGACCGGCGACATTGGGGTTCCGACGATTGGGGGGCCCGGGGGGTGTGCGCACATGATATAC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
13045333 GATCGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAAGCTGGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
13045398 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13045463 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
13045528 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
13045593 TTTTAAAAAATCCGGAACCACAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
13045658 CCATGACACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
13045723 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGC
586 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
* * * *
13045788 ATCCCGTCTCTCTTGCCGGCGTAGTGCCTGCCCGCCCGCACGCCCGCCTGCTTGTTTCATCGGTT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC-CG-CC-CCT--TCGTTTCGTCGGTT
* * *
13045853 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGCGGTAGCAAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * ** * *
13045918 ATCAACAGCACGTAGAGGGGGACTCGACCGATCCCCGGCTTGCCCATCCATCCCCTCTGGTCGGC
776 ATCAACAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * * * * * * *
13045983 GGAGCACTCGGAAGCTCATTTCGTGGGTTGACTTAGGCATGCCGAGTTCAATCCCAGTCAAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
13046045 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
13046110 CTCGAACATGTGCTGGTGTCACATTTTTCTTC-CCTGGGGCACCATCGTCTGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
13046174 AACCTGACTGGCGGCATTGGTGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
13046239 GCGATGGGTGCTGGTACTTGGCCCTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13046304 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCTTTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13046369 TGGGGATACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
13046434 GTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
**
13046499 AATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
13046564 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
13046629 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGACTTAC
584 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* *
13046694 GCATCCCGTCTCTC-GACCGGCGTAGTACCCGCCCGCCCGCACGCCTGCCTGCTCGTTTCGTCGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC-CGCC--CCT--TCGTTTCGTCGG
* * * * *
13046758 TTGGCATAGGCATACCGAGTTCATTCTCAGTCTAACATCAGACCAGACCGAGGGTTGCAGCAGCA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * *** * ** * *
13046823 GGATCAGCAGCACGCAGAGGGGGACCCGGTTGATCCCTGGCTTGCGCATCTTGCCCCTTTGCCCG
774 GGATCAACAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
13046888 ACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
13046952 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAATCGAGGGTTGCTGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
13047017 CTCGATCATGTGCAGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC-G-G-A-------A-A
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * **
13047071 ACCTGACCGACGGTATTAGGGTTTCGGCGATCGGGGGGGCCGAAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
13047136 CGATGGGTGCTGGTACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
13047201 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACGAGTAGCCACTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13047266 AGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTCTC-AGTTTTTAGCTGATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTT
*
13047330 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *
13047395 AATTTTGCAAAATCCTGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
13047460 TACCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *** *
13047525 GTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * * *
13047590 GCATCCCATCTTTCTGGCCGACGTAGTGCCTGCCTG--C-CCG---C-TCATTTCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCCTTCGTTTCGTCGGTTGGC
* * * * * ** ** * *
13047648 TTAAGCATATGAAGTTCGTTCCCAGTCTATGATCAGACTGGATTGAGGGTTGCGGTAGCAAGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
** * * * * * * * * *
13047713 AGTAGTACCCGGAGGGGGACCCGGCTGATCCCTGACTTGCGCATCCCACCCCTCTGCCCTACTGA
779 AACAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
** * * * * * * *
13047778 GCTACCGCACGTTCATTTTGTGGGTTGACTTAGGCATACAGAGTTGATTCCCAATCTGA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13047837 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
13047902 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * * *
13047967 ACCTGACCGACGACATTAGGGTTTC-AGTGATCGGGGGGGCTGGGGGGGTGTGCGCACTTAATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGAT-GGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
13048031 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
13048096 CACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
13048161 TGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCAAGTTTTTCGCTGAATTTTTTA
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
13048226 G-GCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
13048290 AATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
** * *
13048355 TGCCATGAAACTTCATATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAACAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
13048420 ATTGGCATGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCTACGGCTTGC
584 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* *
13048485 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCTAC-CCGCTCGCTT-GTTTCGTCGGTT
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CGCCGC-CCCTTCGTTTCGTCGGTT
* * * * * * *
13048548 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGGCTGAGGTTTGTGACAGCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * *
13048613 ATCGACAGTACGCA-A-----A---GA--GA------------G-A-CCCGCCCCTCTGGCAGGC
776 ATCAACAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * * *
13048653 TGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTTGGCACACGGAGTTCATTCCCAGTATAT
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
13048715 GCATACGAAGTTCATTCCAAGTATAAGATTTGATCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
13048780 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** ** * * * *
13048845 ACTTGATGGGTAGCATTCGGGTTCCGACGATCGGGGGGTCGGAGGGGGGTGTGCGCACATGATTT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* *
13048910 GCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTC-AGGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTC
** *
13048974 ACAATCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13049039 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
13049104 TATGCATGCCAAGAAATATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCATCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * ** * *
13049169 GACTTTAAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTC
453 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
13049234 TTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13049299 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
583 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * *
13049364 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CAC-CCG---C-TCGTTTCGTCGATTGG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCCTTCGTTTCGTCGGTTGG
* * * *
13049422 CTTAGGCATACAGAGTTCATTCCCATTCTAAGATCGGACCAGACC-ATGGGTTGTGGCAGCAGGA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTGCGGCAGCAGGA
** * ** *
13049486 TCTGCA-TCATGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
777 TCAACAGT-ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * ** * * *
13049550 TGAGCGCCCACACGCTTGTTTCGTTCGTTGACTTAAGCATACGGAGTTCATTCCTAGTTTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13049612 GCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
13049677 CTCGGCCATGTGCTGGTGCCGTATTTTTCATCG-CTGGGGCACCATCGTCGAAGCATC-CCTGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCC-GGA
* * * * * ** *
13049740 GAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGCCGAGCGGGATGTGCATAAATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
** *
13049805 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAATTTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13049869 ACACCCCCTTAAAAAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13049934 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
13049999 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAGTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
13050064 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATTGTGAAAAATAGCAAACGAGTCATC
453 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
13050129 TTGTCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13050194 CATTGGCACATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCTTATCGATCCATTGCTTG
583 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * * *
13050259 TGCATCCCGTCTCTCTGGCCGGCATACTGCTCGCCCGCCCGCCTGCCCGC-TC-ATTCGTCGGTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCC-CTTCGTTTCGTCGGTT
* ** * * *
13050322 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCCGACCGATGGTTGTGGCAGCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * *** *
13050387 CTCAACAGTGCGCAGAGGGGGACCTGACCGATCCCCAGCTTGTAAATCCCGCCCCTCTGGCCGGC
776 ATCAACAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * * *
13050452 TGAGCGCCCGTACCGCTTGTTTTGTGGGTTAACTTAGCCATAGGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCA-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13050515 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCAAGGGTTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
13050579 GCTCGGTCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCG-CGGAAGTATCGTCGAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG-AGCATCGCCGGA
* *
13050643 GAACCTGACCAGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
13050708 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13050773 CACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-TGTAAAGTGTCTGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGAA
* * *
13050837 ATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
13050902 TGTGTATGCCTACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCAAAAAATCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
13050967 AAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAACAATCGTG-AAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
13051031 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
13051096 CATTGGCACACAGAAATATGAAGAGGTGCCTAAACCCAGCTACCACCCTATCGATCCATAGCTTG
583 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * * * *
13051161 TGCATCGCGTCTATCTGGCCGGCATAGTGCCCGCCCACCCATCCGCCCCTTCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCCGCCCCTTCGTTTCGTCGGTTG
* * * *
13051226 GCTTAGGCATACAGAGTTCATTCCCAGTCTAACATCGGACTAGACCGAGGGTTGC
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
13051281 AGTAGCACAT
Statistics
Matches: 4564, Mismatches: 589, Indels: 170
0.86 0.11 0.03
Matches are distributed among these distances:
871 3 0.00
872 75 0.02
873 1 0.00
876 4 0.00
878 206 0.05
879 204 0.04
880 264 0.06
881 1 0.00
883 2 0.00
885 271 0.06
886 1 0.00
887 1 0.00
888 2 0.00
892 2 0.00
893 2 0.00
894 2 0.00
895 680 0.15
896 781 0.17
897 221 0.05
898 2 0.00
899 5 0.00
901 1 0.00
902 358 0.08
903 564 0.12
904 4 0.00
905 1 0.00
906 4 0.00
907 438 0.10
908 464 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCCTTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAA
CAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13053293 original size:721 final size:715
Alignment explanation
Indices: 13050515--13053419 Score: 3912
Period size: 720 Copynumber: 4.1 Consensus size: 715
13050505 CCCAGTCTAA
* * * * * * *
13050515 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTGCAGTAGCACATGCTGGG
* * * *
13050580 CTCGGTCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCG-CGGAAGTATCGTCGAAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG-AGCATCGTCGGAG
13050644 AACCTGACC-AGCGGCATTGGGGTTCCGACGAT-AGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
13050707 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGC
193 TGCGATGGGTGCTGGTACTTGGACCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
13050772 ACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-TGTAAAGTGTCTGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGA
* * *
13050836 AATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * * ** *
13050901 TTGTGTATGCCTACAAAAATACAAGGATCACGTCTACCAGGTTTGGGG-CAAAAAATCCTTCTG-
387 TTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-GA
* *
13050964 AAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTC-AACAATCGTG-AAAATAGAAAACGAGT
451 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAA-AATCATGAAAAATAGAAAACGAGT
* * *
13051027 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
* * **
13051092 ATGGCATTGGCACACAGAAATATGAAGAGGTGCCTAAACCCAGCTACCACCCTATCGATCCATAG
580 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * **
13051157 CTTGTGCATCGCGTCTATCTGGCCGGCATAGTGCCCGCCCACCCATCCGCCCCTTCGTTTCGTCG
645 CTTGCGCATCCCGTCTATCTGGCCGGCGTAGT----GCCCACCCGCCCGCCCCTTCGTTTCGTCG
13051222 GTTGGCTTAG
706 GTTGGCTTAG
* *
13051232 GCATACAGAGTTCATTCCCAGTCTAACATCGGACTAGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTGCAGTAGCACATGCTGGG
** * * * * **
13051297 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCAACGCCTGAGCATTGCCACAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
13051362 ACCTGACCGATGGCATTGGGGTTTCGACGATCAGAGGGGCCGGGGGTGGGTGTGCACACATGATG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCC-GGGG-GGGTGTGCGCACATGATG
* * * **
13051427 TGCGATTGGTGCTGGTACTT-CACCCATATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACT
193 TGCGATGGGTGCTGGTACTTGGA-CCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
13051491 CACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCAGCTAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
13051556 AATGAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * * * * *
13051621 TTTGTGCACGCCAAAAAAAACAAAAGGATCACGTCTATCAAGTTTGGGGCCAAAAC-TGTTTCGA
386 TTTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGA
13051685 AAAAAATTTTAAAAAATCCCAAACC-TCAAAAAGTTTCGAAAAT-ATTGAAAAATAGAAAACGAG
451 AAAAAATTTTAAAAAATCCCAAACCGT-AAAAAGTTTCGAAAATCA-TGAAAAATAGAAAACGAG
*
13051748 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGAACCATTGTATGAATTTACAAGCCATAAA
514 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
* * *
13051813 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGGTCCACG
579 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
13051878 ACTTGCGCATCCTGTCTATCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-TCGTTTCATCGTT
644 GCTTGCGCATCCCGTCTATCTGGCCGGCGTAGTGCCCACCCGCCCGCCC-CTTCGTTTCGTCGGT
*
13051942 TAGCTTAG
708 TGGCTTAG
** * * ** * *
13051950 GCATAAAGAGTTCATTCCCAGCCTAAGATCGGACCGGTCGACGGTTGCAGTAGCCCATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCAGTAGCACATGCTGGGC
* * * * *
13052015 TCGAGCATGTGCTGGTGCTGCATTTTTCTTCATC-GAGCACCATCGCCAGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* * ** * *
13052079 CCTGACCGACGGCATTGGTGTTCTGGTGTTCAGGGGGACC-GGGGGGTGTGCGCACATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
13052143 GATCGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCA-CAAAACCTCAAAAACTCAC
196 GATGGGTGCTGGTACTTGGACCATATATTGGCCCCCTATCCCTCATC-AAACCTCAAGAACTCAC
* *
13052207 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACGGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
13052272 GGGGACACTTTTTTCAAATGGTCACAAAATCTTACACACTTCGAGTTTTTAGCTG-ATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * **
13052336 TGC-CACCAACAAAACTACAGGGATCACATATACCAAGTTTGCGGCCAAAACTCCTACCG-AAAA
390 TGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAA
* * * * *
13052399 AATTTTAAAAAATCCCAAACCGCAGAAAGTTTTGAAAATCGTCAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
13052464 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
13052529 ATTGGCATGCAGAAATATCAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13052594 GCATCCCGTCTCTCTAGCCGGCGT-GTGCCCGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGG
650 GCATCCCGTCTATCTGGCCGGCGTAGT----GCCCACCCGCCCG-CC-CCT--TCGTTTCGTCGG
13052658 TTGGCTTAG
707 TTGGCTTAG
* * * *
13052667 GCATACGGAGTTCACTCCCAATCTAAGATCGGATCAGACCGGGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCAGTAGCACATGCTGGG
* *
13052732 CTCGGGCATGTGCCGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** * *
13052797 ACCTGACCGGCGGTATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
13052862 CGATGGGTTCTGGTACTTGGACCTTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGACCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * *
13052927 ACTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
13052992 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
13053056 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-AAAAA
390 TGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAA
* * * *
13053120 AAATTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
13053185 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
13053250 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
13053315 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCTGCCCGCTT-GTTTCGTCAGTTGGCTT
650 GCATCCCGTCTATCTGGCCGGCGTAGTGCCCACCCGCCCGCCC-CTTCGTTTCGTCGGTTGGCTT
13053379 AG
714 AG
*
13053381 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGAC
13053420 TGAAGGTTAC
Statistics
Matches: 1919, Mismatches: 231, Indels: 79
0.86 0.10 0.04
Matches are distributed among these distances:
709 2 0.00
710 240 0.13
711 14 0.01
712 2 0.00
713 198 0.10
714 59 0.03
715 2 0.00
716 55 0.03
717 239 0.12
718 138 0.07
719 66 0.03
720 389 0.20
721 344 0.18
722 171 0.09
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCAGTAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGACCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAA
ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTATCTGGCCGGCGTAGTGCCCACCCGCCCGCCCCTTCGTTTCGTCGGTTGGCTTAG
Found at i:13055352 original size:9 final size:10
Alignment explanation
Indices: 13055340--13055393 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
13055330 TTTTTTCTTT
13055340 TGTATT-TTA
1 TGTATTATTA
*
13055349 TGTATTTTTA
1 TGTATTATTA
*
13055359 TAT-TTATTA
1 TGTATTATTA
13055368 T-TATTATTA
1 TGTATTATTA
13055377 TGTATTAATATA
1 TGTATT-AT-TA
13055389 TGTAT
1 TGTAT
13055394 ATCTGTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 1 0.03
9 19 0.50
10 9 0.24
11 2 0.05
12 7 0.18
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (10 bp):
TGTATTATTA
Found at i:13055457 original size:24 final size:25
Alignment explanation
Indices: 13055422--13055470 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
13055412 TTTTATTTAG
13055422 AATAGATTTATATGTA-TATTATTT
1 AATAGATTTATATGTATTATTATTT
*
13055446 AATAG-TTATATATTTATTATTATTT
1 AATAGATT-TATATGTATTATTATTT
13055471 TATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 2 0.09
24 12 0.55
25 8 0.36
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (25 bp):
AATAGATTTATATGTATTATTATTT
Found at i:13055467 original size:3 final size:3
Alignment explanation
Indices: 13055459--13055499 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
13055449 AGTTATATAT
*
13055459 TTA TTA TTA TT- TTA TTA TTA TTA TTA TTT TTA -TA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
13055500 TATTTTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 6 0.18
3 27 0.82
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (3 bp):
TTA
Found at i:13055479 original size:25 final size:27
Alignment explanation
Indices: 13055429--13055499 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 27
13055419 TAGAATAGAT
* *
13055429 TTATATGTA-TATTA-TTTAATAGTTA
1 TTATATTTATTATTATTTTATTAGTTA
13055454 -TATATTTATTATTATTTTATTA-TTA
1 TTATATTTATTATTATTTTATTAGTTA
13055479 TTATTATTT-TTA-TATTTTATT
1 TTA-TATTTATTATTATTTTATT
13055500 TATTTTTGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
24 7 0.17
25 17 0.43
26 11 0.28
27 5 0.12
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (27 bp):
TTATATTTATTATTATTTTATTAGTTA
Done.