Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 68 of 131
Found at i:13055481 original size:17 final size:17
Alignment explanation
Indices: 13055454--13055517 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 17
13055444 TTAATAGTTA
13055454 TATATTTATTATTA-TTT
1 TATA-TTATTATTATTTT
13055471 TATTATTATTATTATTTT
1 TA-TATTATTATTATTTT
13055489 TATATT-TTATTTATTTT
1 TATATTATTA-TTATTTT
* *
13055506 TGTATTTTTATT
1 TATATTATTATT
13055518 TATCCAATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
16 3 0.07
17 29 0.69
18 10 0.24
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
TATATTATTATTATTTT
Found at i:13055513 original size:7 final size:6
Alignment explanation
Indices: 13055458--13055518 Score: 54
Period size: 6 Copynumber: 10.2 Consensus size: 6
13055448 TAGTTATATA
* * *
13055458 TTTATT ATTA-T TTTATT ATTATT ATTATT TTTATAT TTTATT TATT-TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTAT-T TTTATT T-TTATT
*
13055506 TGTATT TTTATT T
1 TTTATT TTTATT T
13055519 ATCCAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
5 5 0.11
6 32 0.71
7 8 0.18
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:13055545 original size:31 final size:30
Alignment explanation
Indices: 13055510--13055583 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 30
13055500 TATTTTTGTA
* *
13055510 TTTTTATTTATCCAATTATATATCTGTTATT
1 TTTTTATTTATCCAATAATATATCTATT-TT
*
13055541 TTTTTATTTATCCTATAATATATCTATTTT
1 TTTTTATTTATCCAATAATATATCTATTTT
13055571 TTTTTCATTTATC
1 TTTTT-ATTTATC
13055584 TGTTCTAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
30 7 0.18
31 32 0.82
ACGTcount: A:0.24, C:0.11, G:0.01, T:0.64
Consensus pattern (30 bp):
TTTTTATTTATCCAATAATATATCTATTTT
Found at i:13055952 original size:25 final size:24
Alignment explanation
Indices: 13055906--13055953 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
13055896 TCATCAGAAA
* *
13055906 TTTTTTGGGAATTTTTTCAAAATT
1 TTTTTTGGGAATTTCTGCAAAATT
*
13055930 TTTTTCTGGGAATTTCTGGAAAAT
1 TTTTT-TGGGAATTTCTGCAAAAT
13055954 CCTAGATTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (24 bp):
TTTTTTGGGAATTTCTGCAAAATT
Found at i:13056462 original size:22 final size:20
Alignment explanation
Indices: 13056437--13056514 Score: 64
Period size: 18 Copynumber: 4.2 Consensus size: 20
13056427 TTAGATTAGG
13056437 TTTATTTAATATTCTTTTTAT
1 TTTATTT-ATATTCTTTTTAT
13056458 CTTTATTT-TATT-TTTTTAT
1 -TTTATTTATATTCTTTTTAT
*
13056477 TTT-TTTACT-TT-TCTTTAT
1 TTTATTTA-TATTCTTTTTAT
13056495 TTT-TTTAT-TT-TTTTTAT
1 TTTATTTATATTCTTTTTAT
13056512 TTT
1 TTT
13056515 TTAAATAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
17 15 0.29
18 18 0.35
19 8 0.15
20 4 0.08
22 7 0.13
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTATTTATATTCTTTTTAT
Found at i:13056472 original size:18 final size:16
Alignment explanation
Indices: 13056463--13056516 Score: 81
Period size: 18 Copynumber: 3.2 Consensus size: 16
13056453 TTTATCTTTA
13056463 TTTTATTTTTTTATTT
1 TTTTATTTTTTTATTT
13056479 TTTTACTTTTCTTTATTT
1 TTTTA-TTTT-TTTATTT
13056497 TTTTATTTTTTTTATTT
1 TTTTA-TTTTTTTATTT
13056514 TTT
1 TTT
13056517 AAATAAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
16 5 0.14
17 14 0.40
18 16 0.46
ACGTcount: A:0.11, C:0.04, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTATTTTTTTATTT
Found at i:13056474 original size:8 final size:8
Alignment explanation
Indices: 13056463--13056516 Score: 81
Period size: 8 Copynumber: 6.4 Consensus size: 8
13056453 TTTATCTTTA
13056463 TTTTATTT
1 TTTTATTT
13056471 TTTTATTT
1 TTTTATTT
13056479 TTTTACTTT
1 TTTTA-TTT
13056488 TCTTTATTT
1 T-TTTATTT
13056497 TTTTATTTT
1 TTTTA-TTT
13056506 TTTTATTT
1 TTTTATTT
13056514 TTT
1 TTT
13056517 AAATAAAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
8 23 0.53
9 16 0.37
10 4 0.09
ACGTcount: A:0.11, C:0.04, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTATTT
Found at i:13056482 original size:9 final size:9
Alignment explanation
Indices: 13056446--13056516 Score: 76
Period size: 8 Copynumber: 7.9 Consensus size: 9
13056436 GTTTATTTAA
*
13056446 TATTCTTTT
1 TATTTTTTT
13056455 TATCTTTATTT
1 TAT-TTT-TTT
13056466 TA-TTTTTT
1 TATTTTTTT
13056474 TA-TTTTTT
1 TATTTTTTT
*
13056482 TACTTTTCTT
1 TA-TTTTTTT
13056492 TA-TTTTTT
1 TATTTTTTT
13056500 TATTTTTTT
1 TATTTTTTT
13056509 TATTTTTT
1 TATTTTTT
13056517 AAATAAAAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
8 20 0.37
9 20 0.37
10 9 0.17
11 5 0.09
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.82
Consensus pattern (9 bp):
TATTTTTTT
Found at i:13056487 original size:26 final size:27
Alignment explanation
Indices: 13056446--13056508 Score: 94
Period size: 26 Copynumber: 2.3 Consensus size: 27
13056436 GTTTATTTAA
13056446 TATTCTTTTTATCTTTAT-TTTATTTTTT
1 TATT-TTTTTATCTTT-TCTTTATTTTTT
13056474 TATTTTTTTA-CTTTTCTTTATTTTTT
1 TATTTTTTTATCTTTTCTTTATTTTTT
13056500 TATTTTTTT
1 TATTTTTTT
13056509 TATTTTTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 1 0.03
26 23 0.68
27 6 0.18
28 4 0.12
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (27 bp):
TATTTTTTTATCTTTTCTTTATTTTTT
Found at i:13056514 original size:26 final size:27
Alignment explanation
Indices: 13056446--13056514 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
13056436 GTTTATTTAA
* *
13056446 TATTCTTTTTATCTTTATTTTATTTTTT
1 TATTTTTTTTAT-TTTACTTTATTTTTT
13056474 TA-TTTTTTTACTTTT-CTTTATTTTTT
1 TATTTTTTTTA-TTTTACTTTATTTTTT
13056500 TATTTTTTTTATTTT
1 TATTTTTTTTATTTT
13056515 TTAAATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 16 0.43
27 18 0.49
28 3 0.08
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (27 bp):
TATTTTTTTTATTTTACTTTATTTTTT
Found at i:13056808 original size:59 final size:57
Alignment explanation
Indices: 13056539--13056932 Score: 497
Period size: 59 Copynumber: 6.7 Consensus size: 57
13056529 AAAATTCCAA
*
13056539 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTT-C
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
*** * *
13056595 AAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTCCCTTAATAATCAAATTTTCC
1 AAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTCC
* * *
13056654 AAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGTAAATTTTCAAA
1 AAAAAAT-ATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC--C
*
13056715 AAAAAAGGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCGAAATTTCC
1 AAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTCC
* *
13056775 AAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
* * *
13056832 AAAAAAGGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCA
1 AAAAAA--TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
*
13056891 AAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAT-ATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
13056933 CTACACAAGA
Statistics
Matches: 295, Mismatches: 27, Indels: 30
0.84 0.08 0.09
Matches are distributed among these distances:
55 1 0.00
56 41 0.14
57 16 0.05
58 35 0.12
59 105 0.36
60 44 0.15
61 46 0.16
62 4 0.01
63 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (57 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
Found at i:13056866 original size:179 final size:174
Alignment explanation
Indices: 13056530--13056932 Score: 562
Period size: 179 Copynumber: 2.3 Consensus size: 174
13056520 TAAAAATAAA
* * *
13056530 AAATTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTT
1 AAATTTCAAAAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
* * * *
13056594 CAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTTAATAATCAAATTTTCCAAAAA
65 CAAAAAAGATTTTTGAGGAAAAGTTAAAAGTATCAATTTCCCTTAAAAATCAAATTTTCCAAAAA
* ** *
13056659 ATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGT
130 AGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
13056704 AAATTTTCAAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCGAA
1 AAA-TTTC-AAAAAAAA-GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AA
* *
13056769 ATTTCCAAAAAATATTTTT-AGGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAAT-AAATTTT-
61 ATTT-CAAAAAAGATTTTTGA-GGAAAAGTTAAAAGTATCAATTTCCCTTAAAAATCAAATTTTC
13056831 CAAAAAAGGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
124 CAAAAAA-GGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
13056883 AAATTTCAAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATTTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
13056933 CTACACAAGA
Statistics
Matches: 205, Mismatches: 15, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
174 3 0.01
175 3 0.01
176 42 0.20
177 46 0.22
178 12 0.06
179 57 0.28
180 42 0.20
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.34
Consensus pattern (174 bp):
AAATTTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
AAAAAAGATTTTTGAGGAAAAGTTAAAAGTATCAATTTCCCTTAAAAATCAAATTTTCCAAAAAA
GGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:13060486 original size:12 final size:11
Alignment explanation
Indices: 13060464--13060499 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
13060454 AAAAGGTCTC
*
13060464 AAAAATGAAAA
1 AAAAAAGAAAA
13060475 AAAAAAGAAAA
1 AAAAAAGAAAA
13060486 AAAAAAGAAAA
1 AAAAAAGAAAA
13060497 AAA
1 AAA
13060500 TAAATGCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.89, C:0.00, G:0.08, T:0.03
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:13060864 original size:19 final size:19
Alignment explanation
Indices: 13060833--13060906 Score: 80
Period size: 19 Copynumber: 3.8 Consensus size: 19
13060823 AACAATAGGT
13060833 GAAGAATGAGAAAAAAAAA
1 GAAGAATGAGAAAAAAAAA
13060852 GAAG-ATGATGAAAAAAAAA
1 GAAGAATGA-GAAAAAAAAA
* *
13060871 GAAAAAAGA-AAAAAAAAA
1 GAAGAATGAGAAAAAAAAA
*
13060889 GAAAGAAAGAAGAAAAAA
1 G-AAGAATG-AGAAAAAA
13060907 TGAAAAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
18 14 0.30
19 23 0.49
20 4 0.09
21 6 0.13
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (19 bp):
GAAGAATGAGAAAAAAAAA
Found at i:13060877 original size:7 final size:7
Alignment explanation
Indices: 13060865--13060925 Score: 68
Period size: 7 Copynumber: 8.1 Consensus size: 7
13060855 GATGATGAAA
13060865 AAAAAAG
1 AAAAAAG
13060872 AAAAAAG
1 AAAAAAG
*
13060879 AAAAAAA
1 AAAAAAG
13060886 AAAGAAAG
1 AAA-AAAG
*
13060894 AAAGAAG
1 AAAAAAG
13060901 AAAAAATG
1 AAAAAA-G
13060909 AAAAAAATG
1 -AAAAAA-G
13060918 AAAAAAG
1 AAAAAAG
13060925 A
1 A
13060926 GATTCAAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
7 26 0.55
8 13 0.28
9 8 0.17
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:13060886 original size:11 final size:11
Alignment explanation
Indices: 13060862--13060906 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
13060852 GAAGATGATG
*
13060862 AAAAAA-AAAG
1 AAAAAAGAAAA
13060872 AAAAAAGAAAA
1 AAAAAAGAAAA
*
13060883 AAAAAAGAAAG
1 AAAAAAGAAAA
*
13060894 AAAGAAGAAAA
1 AAAAAAGAAAA
13060905 AA
1 AA
13060907 TGAAAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
10 6 0.20
11 24 0.80
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:13060905 original size:37 final size:38
Alignment explanation
Indices: 13060837--13060923 Score: 99
Period size: 37 Copynumber: 2.3 Consensus size: 38
13060827 ATAGGTGAAG
*
13060837 AATGAGAAAAAAAAAGAAGATGATGAAAAAAAAAG-AAAA
1 AATGA-AAAAAAAAAGAAGA-GAAGAAAAAAAAAGAAAAA
*
13060876 AA-GAAAAAAAAAAGAA-AGAAAGAAGAAAAAATGAAAAA
1 AATGAAAAAAAAAAGAAGAG-AAGAA-AAAAAAAGAAAAA
13060914 AATGAAAAAA
1 AATGAAAAAA
13060924 GAGATTCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
35 1 0.02
36 5 0.12
37 19 0.45
38 8 0.19
39 9 0.21
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (38 bp):
AATGAAAAAAAAAAGAAGAGAAGAAAAAAAAAGAAAAA
Found at i:13062171 original size:42 final size:42
Alignment explanation
Indices: 13062112--13062453 Score: 539
Period size: 42 Copynumber: 8.2 Consensus size: 42
13062102 CATGATTGTC
13062112 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
13062154 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
* *
13062196 GAGGAGCAATTTAC-TTTCCAAAAGTCATGGTACCTCTGTTTTA
1 GAGGAGCAATTTACTTTTCC-AAAGTCGTGGTGCCTCTG-TTTA
* *
13062239 GAGGAGCAATTTAC-TTTCCAAAAGTCATGGTACCTCTGTTTA
1 GAGGAGCAATTTACTTTTCC-AAAGTCGTGGTGCCTCTGTTTA
13062281 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
*
13062323 GAGGAGCAATTTA-TTTTCCAAAGTCGTGGTACCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
* * *
13062364 GAGGAGCAATTTGCCTTTCAAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
* *
13062406 GAGGAGCAATTTA-TTTTCAAAAGTCATGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
13062447 GAGGAGC
1 GAGGAGC
13062454 GCCTCTGTTT
Statistics
Matches: 284, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
41 77 0.27
42 160 0.56
43 47 0.17
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (42 bp):
GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
Found at i:13062341 original size:127 final size:125
Alignment explanation
Indices: 13062112--13062453 Score: 564
Period size: 127 Copynumber: 2.7 Consensus size: 125
13062102 CATGATTGTC
13062112 GAGGAGCAATTTACTTTTCC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAA
1 GAGGAGCAATTTAC-TTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAA
13062176 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCATGGTACCTCTGTTTTA
65 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAGTCATGGTACCTCTG-TTTA
* *
13062239 GAGGAGCAATTTACTTTCCAAAAGTCATGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCCAAA
1 GAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAA
* *
13062304 GTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTACCTCTGTTTA
66 GTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCATGGTACCTCTGTTTA
* *
13062364 GAGGAGCAATTTGCCTTT-CAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAA
1 GAGGAGCAATTT-ACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAA
*
13062427 AGTCATGGTGCCTCTGTTTAGAGGAGC
65 AGTCGTGGTGCCTCTGTTTAGAGGAGC
13062454 GCCTCTGTTT
Statistics
Matches: 204, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
124 33 0.16
125 51 0.25
126 26 0.13
127 94 0.46
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (125 bp):
GAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAA
GTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCATGGTACCTCTGTTTA
Found at i:13062388 original size:83 final size:83
Alignment explanation
Indices: 13062112--13062453 Score: 524
Period size: 83 Copynumber: 4.1 Consensus size: 83
13062102 CATGATTGTC
* *
13062112 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAA
1 GAGGAGCAATTTACCTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAA
* *
13062177 GTCGTGGTGCCTCTGTTTA
65 GTCATGGTACCTCTGTTTA
* * *
13062196 GAGGAGCAATTTA-CTTTCCAAAAGTCATGGTACCTCTGTTTTAGAGGAGCAATTTACTTTCCAA
1 GAGGAGCAATTTACCTTT-CAAAAGTCGTGGTGCCTCTG-TTTAGAGGAGCAATTTATTTTCC-A
13062260 AAGTCATGGTACCTCTGTTTA
63 AAGTCATGGTACCTCTGTTTA
* *
13062281 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG
1 GAGGAGCAATTTACCTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG
*
13062346 TCGTGGTACCTCTGTTTA
66 TCATGGTACCTCTGTTTA
* *
13062364 GAGGAGCAATTTGCCTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAAAG
1 GAGGAGCAATTTACCTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG
*
13062429 TCATGGTGCCTCTGTTTA
66 TCATGGTACCTCTGTTTA
13062447 GAGGAGC
1 GAGGAGC
13062454 GCCTCTGTTT
Statistics
Matches: 235, Mismatches: 19, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
83 108 0.46
84 57 0.24
85 67 0.29
86 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (83 bp):
GAGGAGCAATTTACCTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG
TCATGGTACCTCTGTTTA
Found at i:13062459 original size:18 final size:18
Alignment explanation
Indices: 13062436--13062471 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
13062426 AAGTCATGGT
13062436 GCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
13062454 GCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
13062472 AATTTACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.33, T:0.28
Consensus pattern (18 bp):
GCCTCTGTTTAGAGGAGC
Found at i:13062468 original size:59 final size:59
Alignment explanation
Indices: 13062395--13062512 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 59
13062385 AAGTCGTGGT
*
13062395 GCCTCTGTTTAGAGGAGCAATTTATTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGC
* **
13062454 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGC
13062513 AATTTATTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (59 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGC
Found at i:13062511 original size:41 final size:41
Alignment explanation
Indices: 13062454--13062553 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
13062444 TTAGAGGAGC
* *
13062454 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTTGTGGT
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGA
*
13062495 GCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGA
*
13062536 ACCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
13062554 TTTGGTAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (41 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGA
Found at i:13062529 original size:100 final size:101
Alignment explanation
Indices: 13062354--13062553 Score: 330
Period size: 100 Copynumber: 2.0 Consensus size: 101
13062344 AGTCGTGGTA
*
13062354 CCTCTGTTTAGAGGAGCAATTTGCCTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
1 CCTCTGTTTAGAGGAGCAATTTGACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
**
13062419 TTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCG
66 TTTTCAAAAGTCATGGAACCTCTGTTTAGAGGAGCG
* *
13062455 CCTCTGTTTAGAGGAGCAATTT-ACTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTA
1 CCTCTGTTTAGAGGAGCAATTTGACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
* *
13062519 TTTTCCAAAGTCGTGGAACCTCTGTTTAGAGGAGC
66 TTTTCAAAAGTCATGGAACCTCTGTTTAGAGGAGC
13062554 TTTGGTAAAA
Statistics
Matches: 92, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
100 70 0.76
101 22 0.24
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (101 bp):
CCTCTGTTTAGAGGAGCAATTTGACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
TTTTCAAAAGTCATGGAACCTCTGTTTAGAGGAGCG
Found at i:13062566 original size:1 final size:1
Alignment explanation
Indices: 13062560--13062617 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
13062550 GAGCTTTGGT
* * * * * * *
13062560 AAAAAAAAAAACAAAAAAAAACACAAAAAAAAACAAAAAAAAACACAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13062618 TGACAATGTT
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:13062577 original size:10 final size:10
Alignment explanation
Indices: 13062562--13062617 Score: 78
Period size: 11 Copynumber: 5.5 Consensus size: 10
13062552 GCTTTGGTAA
13062562 AAAAAAAAAC
1 AAAAAAAAAC
13062572 AAAAAAAAACAC
1 -AAAAAAAA-AC
13062584 AAAAAAAAAC
1 AAAAAAAAAC
13062594 AAAAAAAAAC
1 AAAAAAAAAC
*
13062604 -ACAAAAAAC
1 AAAAAAAAAC
13062613 AAAAA
1 AAAAA
13062618 TGACAATGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
9 8 0.20
10 15 0.37
11 16 0.39
12 2 0.05
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:13062577 original size:12 final size:12
Alignment explanation
Indices: 13062560--13062617 Score: 75
Period size: 12 Copynumber: 4.9 Consensus size: 12
13062550 GAGCTTTGGT
13062560 AAAAAAAAAAAC
1 AAAAAAAAAAAC
13062572 --AAAAAAAAAC
1 AAAAAAAAAAAC
*
13062582 ACAAAAAAAAAC
1 AAAAAAAAAAAC
*
13062594 AAAAAAAAACAC
1 AAAAAAAAAAAC
13062606 AAAAAACAAAAA
1 AAAAAA-AAAAA
13062618 TGACAATGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
10 10 0.25
12 26 0.65
13 4 0.10
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:13062590 original size:22 final size:22
Alignment explanation
Indices: 13062562--13062611 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
13062552 GCTTTGGTAA
13062562 AAAAAAAAACAAAAAAAAACAC
1 AAAAAAAAACAAAAAAAAACAC
13062584 AAAAAAAAACAAAAAAAAACAC
1 AAAAAAAAACAAAAAAAAACAC
13062606 AAAAAA
1 AAAAAA
13062612 CAAAAATGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (22 bp):
AAAAAAAAACAAAAAAAAACAC
Found at i:13062806 original size:9 final size:10
Alignment explanation
Indices: 13062794--13062847 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
13062784 TTTTTTCTTT
13062794 TGTATT-TTA
1 TGTATTATTA
*
13062803 TGTATTTTTA
1 TGTATTATTA
*
13062813 TAT-TTATTA
1 TGTATTATTA
13062822 T-TATTATTA
1 TGTATTATTA
13062831 TGTATTAATATA
1 TGTATT-AT-TA
13062843 TGTAT
1 TGTAT
13062848 ATCTATATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 1 0.03
9 19 0.50
10 9 0.24
11 2 0.05
12 7 0.18
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (10 bp):
TGTATTATTA
Found at i:13062901 original size:23 final size:22
Alignment explanation
Indices: 13062875--13062917 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
13062865 TAGAATAGAT
*
13062875 TTATATGTATATTATTTATATAG
1 TTATATATATATTA-TTATATAG
*
13062898 TTATATATTTATTATTATAT
1 TTATATATATATTATTATAT
13062918 TATTATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
TTATATATATATTATTATATAG
Found at i:13062908 original size:31 final size:29
Alignment explanation
Indices: 13062811--13062921 Score: 93
Period size: 31 Copynumber: 3.7 Consensus size: 29
13062801 TATGTATTTT
*
13062811 TATATTTATTATTATTATTATGTAT-T--AA
1 TATATTTA-TATTA-TATTATTTATATAGAA
* *
13062839 TATATGTATATCTATATTTATTTATTTAGAA
1 TATATTTATAT-TATA-TTATTTATATAGAA
* *
13062870 TAGATTTATATGTATATTATTTATATAGTTA
1 TATATTTATAT-TATATTATTTATATAG-AA
13062901 TATATTTATTATTATATTATT
1 TATATTTA-TATTATATTATT
13062922 ATTTTTTTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
27 5 0.07
28 16 0.24
29 1 0.01
30 11 0.16
31 32 0.47
32 3 0.04
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (29 bp):
TATATTTATATTATATTATTTATATAGAA
Found at i:13062924 original size:14 final size:16
Alignment explanation
Indices: 13062882--13062921 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
13062872 GATTTATATG
13062882 TATATTATTTATATAGT
1 TATATTATTTAT-TAGT
13062899 TATA-TATTTATTA-T
1 TATATTATTTATTAGT
13062913 TATATTATT
1 TATATTATT
13062922 ATTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.23
15 6 0.27
16 7 0.32
17 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TATATTATTTATTAGT
Found at i:13062933 original size:18 final size:18
Alignment explanation
Indices: 13062875--13062951 Score: 59
Period size: 19 Copynumber: 4.1 Consensus size: 18
13062865 TAGAATAGAT
*
13062875 TTATATGTA-TATTATTTA
1 TTATAT-TATTATTTTTTA
*
13062893 -TATAGTTATATATTTATTA
1 TTATA-TTAT-TATTTTTTA
*
13062912 TTATATTATTATTTTTTT
1 TTATATTATTATTTTTTA
*
13062930 TTATTTTATTTATTTTTGTA
1 TTATATTA-TTATTTTT-TA
13062950 TT
1 TT
13062952 TTTATTTATC
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
17 6 0.13
18 15 0.32
19 19 0.40
20 7 0.15
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (18 bp):
TTATATTATTATTTTTTA
Found at i:13062954 original size:18 final size:17
Alignment explanation
Indices: 13062903--13062960 Score: 66
Period size: 18 Copynumber: 3.4 Consensus size: 17
13062893 TATAGTTATA
* *
13062903 TATTTATTATTATATTAT
1 TATTTATT-TTTTATTTT
13062921 TATTT-TTTTTTA-TTT
1 TATTTATTTTTTATTTT
13062936 TATTTATTTTTGTATTTT
1 TATTTATTTTT-TATTTT
13062954 TATTTAT
1 TATTTAT
13062961 CTAATTATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
15 7 0.20
16 9 0.26
17 4 0.11
18 15 0.43
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
TATTTATTTTTTATTTT
Found at i:13062990 original size:32 final size:31
Alignment explanation
Indices: 13062950--13063059 Score: 114
Period size: 32 Copynumber: 3.4 Consensus size: 31
13062940 TATTTTTGTA
*
13062950 TTTTTATTTATCTAATTATATATCTGTTATTT
1 TTTTTATTTATCT-ATTATATATCTATTATTT
*
13062982 TTTTTATTTATCCTATAATATATCTATT-TTT
1 TTTTTATTTAT-CTATTATATATCTATTATTT
* *
13063013 TTTTTCGATTTATCTGTTCTAATTATCTATTATTT
1 TTTTT--ATTTATCTATTAT-A-TATCTATTATTT
13063048 TTTTATATTTAT
1 TTTT-TATTTAT
13063060 TTGATTTTTA
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
31 8 0.12
32 27 0.41
33 9 0.14
34 14 0.21
35 7 0.11
36 1 0.02
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.65
Consensus pattern (31 bp):
TTTTTATTTATCTATTATATATCTATTATTT
Found at i:13063378 original size:12 final size:11
Alignment explanation
Indices: 13063346--13063376 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
13063336 GAATCATCAG
13063346 AAATTTTTTCA
1 AAATTTTTTCA
13063357 AAATTTTTTCA
1 AAATTTTTTCA
13063368 AAATTTTTT
1 AAATTTTTT
13063377 TCTGGGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (11 bp):
AAATTTTTTCA
Found at i:13063977 original size:22 final size:20
Alignment explanation
Indices: 13063952--13064049 Score: 69
Period size: 20 Copynumber: 4.8 Consensus size: 20
13063942 TTAGATTAGG
13063952 TTTATTTAATATTCTTTTTAT
1 TTTATTT-ATATTCTTTTTAT
13063973 CTTTATTT-TATT-TTTTTAT
1 -TTTATTTATATTCTTTTTAT
* *
13063992 TTT-TTTACTTTTCTTTATTTT
1 TTTATTTA-TATTCTTT-TTAT
* *
13064013 TTTATTTTTATTTATTTTTA-
1 TTTATTTATA-TTCTTTTTAT
*
13064033 TTTATTCTATTTTCTTT
1 TTTATT-TATATTCTTT
13064050 AAATAAAAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 16
0.71 0.11 0.19
Matches are distributed among these distances:
17 3 0.05
18 3 0.05
19 10 0.17
20 18 0.30
21 11 0.18
22 15 0.25
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTATTTATATTCTTTTTAT
Found at i:13064008 original size:10 final size:8
Alignment explanation
Indices: 13063978--13064050 Score: 76
Period size: 8 Copynumber: 8.6 Consensus size: 8
13063968 TTTATCTTTA
13063978 TTTTATTT
1 TTTTATTT
13063986 TTTTATTT
1 TTTTATTT
13063994 TTTTACTTT
1 TTTTA-TTT
13064003 TCTTTATTT
1 T-TTTATTT
13064012 TTTTATTT
1 TTTTATTT
*
13064020 TTATT-TAT
1 TT-TTATTT
13064028 TTTTATTT
1 TTTTATTT
*
13064036 ATTCTATTT
1 -TTTTATTT
13064045 TCTTTA
1 T-TTTA
13064051 AATAAAAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
7 2 0.04
8 29 0.53
9 20 0.36
10 4 0.07
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTATTT
Found at i:13064014 original size:28 final size:28
Alignment explanation
Indices: 13063974--13064038 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
13063964 TCTTTTTATC
13063974 TTTATTTTATTTTTTTA-TTTT-TTTACT
1 TTTA-TTTATTTTTTTATTTTTATTTACT
* *
13064001 TTTCTTTATTTTTTTATTTTTATTTATT
1 TTTATTTATTTTTTTATTTTTATTTACT
13064029 TTTATTTATT
1 TTTATTTATT
13064039 CTATTTTCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.36
27 7 0.21
28 14 0.42
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (28 bp):
TTTATTTATTTTTTTATTTTTATTTACT
Found at i:13064050 original size:14 final size:13
Alignment explanation
Indices: 13063979--13064050 Score: 56
Period size: 14 Copynumber: 5.3 Consensus size: 13
13063969 TTATCTTTAT
*
13063979 TTTATTT-TTTTA
1 TTTATTTATTTTC
*
13063991 TTTTTTTACTTTTC
1 TTTATTTA-TTTTC
* *
13064005 TTTATTTTTTTATT
1 TTTATTTATTT-TC
*
13064019 TTTATTTATTTTTA
1 TTTATTTA-TTTTC
13064033 TTTATTCTATTTTC
1 TTTATT-TATTTTC
13064047 TTTA
1 TTTA
13064051 AATAAAAATA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
12 6 0.13
13 3 0.06
14 33 0.70
15 5 0.11
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTTATTTTC
Found at i:13064197 original size:120 final size:117
Alignment explanation
Indices: 13064066--13064352 Score: 407
Period size: 120 Copynumber: 2.4 Consensus size: 117
13064056 AAATAAAAAA
*
13064066 TTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTCCCTTAAAAATCAAAATTTGC
1 TTCAAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTCCCTTAAAAAT-AAAATTTGA
* ** *
13064131 AAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGTAAATT
64 AAAAAACGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-T
* * *
13064186 TTCAAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTGA
1 TTCAAAAAAAAA-TATTTTTG-GGAAAAGTTGAAAGTATCAATTTCCCTTAAAAATAAAATTTGA
*
13064251 AAAAAACGATTTTTAAGGAAAGGTTGAAAGTATCAATTTTCCTTAAAAATAAAT
64 AAAAAACGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAT
13064305 TTC--AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCCT
1 TTCAAAAAAAAAT-ATTTTT-GGGAAAAGTTGAAAGTATCAA-TTTCCCT
13064353 ACACAAGAAC
Statistics
Matches: 151, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
117 33 0.22
118 7 0.05
119 4 0.03
120 68 0.45
121 39 0.26
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (117 bp):
TTCAAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTCCCTTAAAAATAAAATTTGAAA
AAAACGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAT
Found at i:13064283 original size:59 final size:59
Alignment explanation
Indices: 13064071--13064350 Score: 402
Period size: 59 Copynumber: 4.7 Consensus size: 59
13064061 AAAAATTCAA
* * *
13064071 AAAAAAAT-ATTTTTAGGGAAAAGTTGAAAGTATCAATTTCCCTTAAAAATCAAAATTTG
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTG
* * *
13064130 CAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGTAAATTTTCAA
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT--G
* *
13064191 AAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTG
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTG
* ** * *
13064250 AAAAAAACGATTTTTAAGGAAAGGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTG
13064308 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
13064351 CTACACAAGA
Statistics
Matches: 199, Mismatches: 19, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
58 42 0.21
59 64 0.32
60 39 0.20
61 54 0.27
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.33
Consensus pattern (59 bp):
AAAAAAATGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTG
Found at i:13065539 original size:26 final size:26
Alignment explanation
Indices: 13065509--13065559 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13065499 GTTGACTTAG
*
13065509 GCATAC-AGAGTTCATTCCTAGTCTAT
1 GCATACGA-AGTTCATTCCCAGTCTAT
13065535 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
13065560 AGATCGGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAT
Found at i:13066428 original size:26 final size:26
Alignment explanation
Indices: 13066399--13066449 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13066389 GTTGACTTAG
*
13066399 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
13066425 GCATATGGAGTTCATTCCCAATCTA
1 GCATACGAAGTTCATTCCCAATCTA
13066450 GGATCGAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:13067079 original size:903 final size:902
Alignment explanation
Indices: 13064829--13071207 Score: 8223
Period size: 890 Copynumber: 7.1 Consensus size: 902
13064819 GTTATGACAT
* *
13064829 TGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCGTAC-
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC--ACA
* *
13064893 CCCCTTAGAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
64 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
13064958 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
129 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* *
13065023 CATGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGACCAAAACTCCTTCCGAAAAAAT
194 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
13065088 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGT
259 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
13065153 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTGAAAAGCCATAAAAATGGCATT
324 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
13065218 TGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCATATCGATCCACGGCTTGCGCA
389 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
13065283 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTT
454 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTT
* * * * *
13065348 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGG-TCGAGGGTTACGGTAGCAGGATCG
519 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGATAGAGGGTTGCGGCAGCAGGATCG
*
13065412 GCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAG
583 GCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
13065477 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCTATGCATAC
648 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATAC
* * * * * * *
13065541 GAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGACAGTAGATGCTGGGCTCGGG
712 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** *
13065606 CATGTGTTGGTGTCATATTTTTCTTCGTCGGGGCACCA---TC---G--TC-T--GAGAACCTGA
777 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * *
13065660 CCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGA
842 CCGGCGGCATTGGGGTTCCGACGATC-GGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
13065721 TGGGTACTGGTACTTGGCCCTTATATGGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
13065786 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAATGTCTGAAATGGGG
66 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
13065851 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCA
131 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
* * * *
13065916 TGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGACCTAAACTCCTTCC-AAAAAAATT
196 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
13065980 TAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
261 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
13066045 CGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
326 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
13066110 CACATAGAAATATGAAGATGTACCTAAAGCCACCTACTACCTTATCGATCCACGGCTTGCGCATC
391 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
13066175 CCGTCTCTCTGGCCGGCATTGTGCCCGCCCGCCCGCCCGCCTACTCGTTTCGTTGATTGGCTTAG
456 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAG
* *
13066240 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGTGGCAGCAAGATCGGCA
521 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
13066305 GCACGTAGAGGGTGACCCGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCCGAGCGC
586 GCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * * *
13066370 CTGCATGCTCATTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAG
651 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
13066435 TTCATTCCCAATCTAGGATCGAACCAGACCGAGAGTTACGGCAGCACATGCTGGGCTCGGGCATG
716 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * * * *
13066500 TGCTGGTGCCGCATTTTTCTTCCCCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTAATCGG
781 TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * **
13066565 CGGCATTGGGGTTCCGGCGATTGGGCGAGCCAAGGGGGTGTGCGCACATGATGTGCGA
846 CGGCATTGGGGTTCCGACGATCGGG-GAGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
13066623 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
13066688 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGAG
66 -CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
13066753 GATACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTGTTTTGTGC
130 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
*
13066818 ATGCCAAAAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
195 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * *
13066883 TTAAAAAATCTCAAACCCCAAAAAGTTTGAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTACC
260 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
13066948 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAA-CCATAAAAATGGCATTG
325 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
13067012 GGACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCAT
390 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
13067077 CCCGTTTCTCTGGTCGGCGTAGTGCCCGCCCGCCCG--C-CC-GCACGTTTCATCAGTTGGCTTA
455 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTA
* * * * * * *
13067138 GGCATACAGAGTTCATTCTCAGTCTAGGATCAGA-CGGATTGAGGGTTGTC-GTAGTACGATCGG
520 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTG-CGGCAGCAGGATCGG
* * * ** * *
13067201 CAGCACGCAGAAGGGGACTCGACCGATTCC-CGATTTACGCATCCCGCCCCTCTGGCCGGCCGAG
584 CAGCACGTAGAGGGGGACCCGACCGA-TCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
13067265 CGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATAC
648 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATAC
* * * * * *
13067329 AGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGTGGGTTGCGGCCGCACATGCTGGGCTCGAG
712 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* ** * *
13067394 CATGTGCTGGTGCCGTATTTTTCTTCCCCGAGCCACCATCGTCGGAGCATCGTCGGAGAACCTGA
777 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * * *
13067459 CCGGCGGCTTTGAGGTTCCGACGATTGGGGGAGTCGGGGGGGGTGTGTGCACATGATGTGCGG
842 CCGGCGGCATTGGGGTTCCGACGA-TCGGGGAG-CCGGGGGGGTGTGCGCACATGATGTGCGA
13067522 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACA
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-
* * * *
13067587 CCATTAAAGAGCATTTGAGATTTTACAGTTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
65 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
13067652 GATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG---------A---
130 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
13067705 AT---AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
195 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
13067767 TTAAAAAATCCCGAACCGTAAAAATTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
260 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
13067832 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
325 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * *
13067897 GCACGCAAAAATATCAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACCGCTTGCGTAT
390 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** * * * * * * *
13067962 CCCATCTCTCTGGGTGGCGTATTGCCCGTCTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGGTTA
455 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTA
* * *
13068027 GGCATA-GGAGTTCATTCCCAGTCTAAGATTAGACCGGACT-GAGGGTTGCGACAGCAGGATCGA
520 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TAGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
13068090 TAACACGCGTA-A-GTGGACTCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
584 CAGCA--CGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
13068153 GTGCCCGTAAGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
647 GCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
* * * *** * **
13068218 GGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAAGGTTATAGCAGCACATGCTAGGCTCAAG
712 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * ** * * *
13068283 CATGTGCTTGTGCCACATTTTTCTTCATCGGGGCGCCATCACCGAAGCCTCGTCGGAGAACCAGA
777 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * *
13068348 CCAGCGGCATTGGGATTCCGGCGATCGGGGAGGCCGGAGGGGGTTGTGCGCACATGATGTGCGA
842 CCGGCGGCATTGGGGTTCCGACGATCGGGGA-GCCGG-GGGGG-TGTGCGCACATGATGTGCGA
* *
13068412 TGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
13068477 CCTTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGTCTGGAATGGG
66 CC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
13068542 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTTTGC
130 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* * * *
13068607 ATGCCAAGAAAAATAGAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTTCGAAAAAATC
195 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * ** * * *
13068671 TTGAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATTAAAAATAGAAAACAAGTCGTCTTGCC
260 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
13068736 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATTGCATTG
325 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
13068801 GCATGAAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTGTGCAT
390 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
13068866 CCCGTCTCTCTGGCCGACGTA--------ACGCCTGCCCGCCTGCTCATTTCATCGGTTGGCTTA
455 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTA
* * * * * * * ** * * * * * *
13068923 GCCACACGAAGTTCATTCTCAATCTAACATCAGACCAGACCGAGGTTTACGGTAGCCGAATCGGT
520 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGGCAGCAGGATCGGC
* * * * * ** * *
13068988 AGCATGCA-ACTGGGTACCCGACCGATCCCCGGCTTATGCATCCTGCCCCTCTGGCCGACTGAGC
585 AGCACGTAGA-GGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* ** * * * *
13069052 ACCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGA
649 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
* * * *
13069117 AGTTCATTCCCAGTCCAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGTTCGGGCA
714 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * *
13069182 TGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATC-ACTGGAGTATCGTCAGAGAACCTGAC
779 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGAC
* * * *
13069246 CGGAGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGAGGTGTGTGCACATGATGTGCGA
843 CGGCGGCATTGGGGTTCCGACGATCGGGGAG-CCGGGGGGGTGTGCGCACATGATGTGCGA
13069307 TGGGTGC-GGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATTC
1 TGGGTGCTGG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA--C
* * *
13069371 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTAAAATA
63 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13069435 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
128 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * * *
13069500 GCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
193 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
13069565 TTTAAAAAAATCTCGAACCGCAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
258 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
13069630 -CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
323 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * *
13069694 TTCCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGC
388 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * ** **
13069759 ATCCCGTCTCTCTGGCCGGTATCGTGCCCGCCTACCCGCCCTTCTGCTCGTTTCATCGGTTGGCT
453 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCT
* * * * *
13069824 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGCTCCGAACCA-AGGGTTGCAGCAGCAGGAT
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-TAGAGGGTTGCGGCAGCAGGAT
* * *
13069887 TGGCAGCACGTAGAGGGGGACCCGGCCGATCC-CTGGCTTGCGCATCCCGCCCCAT-TGGTCGGC
581 CGGCAGCACGTAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCC-TCTGGCCGGC
*
13069950 TGAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
644 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
* * * * * *
13070015 TACGGAGTTCATTCCCGGTCTATGATCGGACCGGATCGAGGGTTGTGGTAGCACATACTGGGCTC
709 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * *
13070080 AGACATGTGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCCGAGAACC
774 GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * *
13070145 TGACCGGCGGCATTGGGGTTCCGATGATCGTGGGGGCTGGGGGAGGTGTGCGCACATGATGTGCG
839 TGACCGGCGGCATTGGGGTTCCGACGATCG-GGGAGCCGGGGG-GGTGTGCGCACATGATGTGCG
13070210 A
902 A
* * *
13070211 TGGGTGTTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACA
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-
* *
13070276 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAG
65 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
13070341 GATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTT-TG
130 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTATG
* * * * *
13070405 CATGCCAATAAAAATACAACGATCATGTGTACCAACTTTGGGGCCAAAACTCCTT-CGAAAAAAA
194 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAA
* * *
13070469 ATTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
258 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
13070534 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
323 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * **
13070599 TGGCATGTAGAAATATGAAGATGAGCCTAAACCCGCCTACCACCCTATCGATCTTCGGCTTGCGC
388 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
13070664 ATCCCGTCTCCCTTGCCGACGTAGTGCCCGCCCGCTCG--C-CC-GCTCATTTCATCGGTTGGCT
453 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCT
* * ** * *
13070725 TAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGGAGAGAGGGTTGCATCAACAAGATCG
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGGCAGCAGGATCG
* * * * * ** *
13070790 ACAGCACGCAGAGGGGGACCCAACCGATCCTCGGCTTGCGTATCCCACCCCTCTGGCTAGCTAAG
583 GCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
13070855 CGCCCGCACGCTCATTTC----G-TG-----GG--T-TG-A---C-TT---AG-----GCATACG
648 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * *
13070894 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTAGGGC
713 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
13070959 ATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
778 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
** * *
13071024 CGGCAGG-ATTGGGGTTCCGGTGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
843 CGGC-GGCATTGGGGTTCCGACGATCG-GGGAGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
13071085 TGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-C
* * *
13071150 CCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGTCAGTAGCAATTAAAGTGTCTG
65 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
13071208 GCCGACGTAG
Statistics
Matches: 4800, Mismatches: 594, Indels: 204
0.86 0.11 0.04
Matches are distributed among these distances:
874 136 0.03
875 153 0.03
876 2 0.00
880 2 0.00
883 2 0.00
884 162 0.03
885 104 0.02
887 4 0.00
888 39 0.01
889 281 0.06
890 681 0.14
891 184 0.04
892 56 0.01
893 2 0.00
894 2 0.00
895 373 0.08
896 117 0.02
897 284 0.06
898 272 0.06
899 248 0.05
900 8 0.00
901 173 0.04
902 93 0.02
903 594 0.12
904 633 0.13
905 195 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGGCAGCAGGATCGGCA
GCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGA
Found at i:13067327 original size:26 final size:26
Alignment explanation
Indices: 13067297--13067349 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13067287 GTTGACTTAG
13067297 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13067323 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13067349 G
1 G
13067350 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13068223 original size:26 final size:26
Alignment explanation
Indices: 13068186--13068238 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13068176 GTTGACTTAG
13068186 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13068212 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13068238 G
1 G
13068239 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13070016 original size:26 final size:26
Alignment explanation
Indices: 13069986--13070036 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13069976 GTTGACTTAG
13069986 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
13070012 GCATACGGAGTTCATTCCCGGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
13070037 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13071457 original size:26 final size:26
Alignment explanation
Indices: 13071421--13071473 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13071411 GTTGACTTAG
*
13071421 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
13071447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13071473 G
1 G
13071474 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13073252 original size:26 final size:26
Alignment explanation
Indices: 13073223--13073275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13073213 GTTGACCTAG
*
13073223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13073249 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13073275 G
1 G
13073276 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13073519 original size:899 final size:898
Alignment explanation
Indices: 13071228--13074917 Score: 4708
Period size: 902 Copynumber: 4.1 Consensus size: 898
13071218 TGCCTGCCCA
* * * ** **
13071228 CCCGCCCACCCGCTCGTTTCATCGGTTAGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATTA
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * ** * * * *
13071293 GACCAGATCGGGGGTTGTGG-AGGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCTG
66 GACCGGACCAAGGGTTGCGGCA-GCAGGATCAACAGCACGCAGAGGGGGACCC-GTCGATCCCCG
* * * * ** * *
13071357 GC-CAGCACATCCCGCCCCTCTAGCCGGTTGAGCGCCCGCACGCTCATTTAG-GTGGTTGACTTA
129 ACTTA-CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG-GGTTGACTTA
* * *
13071420 GGCATATGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
192 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * ** **
13071485 CTGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGGTGGTGCCGTATTTTTCTTCGTCGGG
257 CCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
* ** * * * * * **
13071550 GCAGCATCGTCGGAGCATCGCCCGAGAACTTGACCGGCGGCTTTGGGGTTCTGACGATCGGGGGG
322 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGG
* * * *
13071615 GCCGGGGGAGGTGTGCGCACATGATGTGCGATGGATGCTAGTACTTGGCTCTTATATTGGCCCCC
387 GCC-AGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
13071680 TATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGC
451 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* ** *
13071744 TGCCAGTAGCCATTAAAGTGTCAGAAATAAGGACAATTTTTTCAAATGGTCACAAAATCTTGTAC
516 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
13071809 ACTTCA-AGTTTTTAGCAGAATTTTTTTGTGCGTGCCAACAAAAATACAAGGATCATATCTACTA
581 ACTT-AGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCA
* * * * **
13071873 AGTTTGGGGCCAAGACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAATGGTTTCAAAA
645 AGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
* * *
13071938 ATCGTGAAAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAAGGGATCATT
709 ATCATGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
13072002 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
774 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCA
* * * *
13072067 CCTACCACCCTATCAATCCAC-AGCTTGCGCATCCCGTCTCTCTGGGCGACGTAGTGTCTGCCCG
839 ACTACCACCCTATCGATCCACGA-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CT---CG
* * * * *
13072131 CCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCTTTCCTAGTCTAAGATTG
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *** *
13072196 GTCTGGACCAAGGGTTACAGCAGTAGGATTGGCAGCACGCAGAGGGGGACTCGGTCGATCCCCGA
66 GACCGGACCAAGGGTTGCGGCAGCAGGATCAACAGCACGCAGAGGGGGAC-CCGTCGATCCCCGA
* ** * * * *
13072261 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGTACCCGTACACTCGTTTCATGGGTTGACTTACGC
130 CTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * *
13072326 ATACGGAGTTCATT-CTAGTATAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACTGGACTG
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * **** *
13072390 AGGGTTGCGGTAGCACATGCTGGGCTTGGGCTTGTGCTGGTGCCGCATTTTTCTTTGTAGGGGAA
260 AGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCA
* *** * ***
13072455 CCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATGGGGGTTCCGGTGATCAGGGGGTTG
325 CCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCC
* * *
13072520 GGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATC
390 AGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13072585 CCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCC
455 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13072650 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTT
520 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* ** *
13072715 AGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTT
585 AGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
* * * ** *
13072780 GGGGCCAAAACACCTTGCGAAAAAATTTTAAAAAATCTTGAACCGCAACAAGTTTTGAAAATCGT
650 GGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
* *
13072845 GAAAAATAGAAAAAGAGTCATCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGACCATTGTATG
714 GAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
13072910 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAACCCAACTAC
779 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCAACTAC
* *
13072975 CACCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTGGCTGGCGTAGTGCTCG
844 CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCG
* * * *
13073030 CCCGCCCGCCAGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * *
13073095 GACCGGACTGAA-GGTTGCGGCACCCGGATCAATAGCACACAGAGGGGGACCCGATCGATTCTCA
66 GACCGGAC-CAAGGGTTGCGGCAGCAGGATCAACAGCACGCAGAGGGGGACCCG-TCGATCCCCG
* * * * * *
13073159 ACTTGCGCATCCCGCCCCTCTGGCCGACTGCGCGCCCGCATGCGCGTTTCGTTGGTTGACCTAGG
129 ACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
13073224 CATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
194 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* ** *
13073289 GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATAAGCTGGTGCCACATTTCTCTTCACCGGGGC
259 GAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
*** ** * * * *
13073354 ACCATTGTCGGAGCATCGTCGGAGAACCTGACCGACGATATTAGGTTTCCAATGATCGGAGGGGC
324 ACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGC
* *
13073419 CAGGG-GGTGTGCACACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTAT
389 CAGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
13073483 CCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
454 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
13073548 TAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
519 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
13073613 TCGAGTTTTTAGTTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
584 TAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * ** *
13073677 TGGGGCCAAACCTGCTTCTGAAAAAATTTTAAAAAATCCAAAACCACAAAAAGTTTCAAAAATCA
649 TGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCA
*
13073742 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
713 TGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * ** *
13073807 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTGTAAACCCACCTA
778 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCAACTA
* *
13073872 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-G
843 CCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCG
*
13073924 CCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * *
13073989 GATCGGA-CAGAGGGTTGTGGCAGCAGGATCAACAGCATGTAGAGAGGGACCTGGCTAATCCCCG
66 GACCGGACCA-AGGGTTGCGGCAGCAGGATCAACAGCACGCAGAGGGGGACCCGTC-GATCCCCG
* * *
13074053 ACTTACGCATCCCACCCCTCTGGCC-AGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
129 ACTTACGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
13074117 GCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAT
193 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * * *
13074182 CAAAGGTTACGGTAGCAGATGCTGGACTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGG
258 CGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* * * * * *
13074247 CACCATCACCGAAGCATC-ACTAGAGAACCTGACC-AGTGGCATTGGGGTTGCAGCGATCGGGGG
323 CACCATCACCGGAGCATCGTC-GGAGAACCTGACCGA-CGGCATTGGGGTTCCAACGATCGGGGG
* * * *
13074310 GGCCAGAGG-GGTGTGCGCACATGATTTGCGATGGGTGCTGGAACTTGGCCCTTATTTTGGCCCT
386 GGCCAG-GGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
13074374 CTATCCCTCAGCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
450 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
13074439 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATCGTCACAAGAT-TATGT
515 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT-TGT
* * * * * * *
13074503 ACACTTCGAGCTTTTGGCTGATTTTTTTTGTGCATGCCAATAAAAATACAGGGATCACATCTACA
579 ACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
* * * * **
13074568 AAGTTTGGGGCCGAAACTCCTTCCAAAAATATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAA
644 AAGTTTGGGGCCAAAACTCCTTCGAAAAA-ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAA
13074633 AATCATGAAAAATA-AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
708 AATCATGAAAAATAGAAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
13074697 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAAATGTGCCTAAACC
772 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAAATGTGCCTAAACC
* * * * * *
13074762 C-ACGTACCACCCTATCGATACATGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCA
837 CAAC-TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCG
* *
13074824 CCTTATCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG
1 CC----CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
13074889 ATCGGACCGGACCAAGGGTTGCGGCAGCA
62 ATCGGACCGGACCAAGGGTTGCGGCAGCA
13074918 CATGCTGGGC
Statistics
Matches: 2419, Mismatches: 335, Indels: 65
0.86 0.12 0.02
Matches are distributed among these distances:
892 1 0.00
893 5 0.00
894 319 0.13
895 199 0.08
896 255 0.11
897 1 0.00
898 266 0.11
899 362 0.15
900 150 0.06
901 84 0.03
902 385 0.16
903 305 0.13
904 85 0.04
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGACCAAGGGTTGCGGCAGCAGGATCAACAGCACGCAGAGGGGGACCCGTCGATCCCCGAC
TTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
GGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
CATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCA
GGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTA
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
GGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
AAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCAACTACCA
CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCG
Found at i:13074153 original size:26 final size:26
Alignment explanation
Indices: 13074117--13074169 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13074107 GTTAACTTAG
*
13074117 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13074143 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13074169 G
1 G
13074170 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13075600 original size:26 final size:26
Alignment explanation
Indices: 13075564--13075616 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13075554 TTTGACTTAG
*
13075564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13075590 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13075616 G
1 G
13075617 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13078058 original size:707 final size:712
Alignment explanation
Indices: 13076703--13078155 Score: 2079
Period size: 707 Copynumber: 2.0 Consensus size: 712
13076693 CCCAATCTAA
* * * * * * *
13076703 GCATACGGATTTCATTCCAAGTCTAA-TTCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGAACCAGACCGAGAGTTACAGCAGCACATGCTGGG
13076767 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *
13076832 ACCTGACCGACGGCATTAGGGTTCTGGCGATCGGGGGGGCTGGGGGGTATGCGCTCATGATGTTC
130 ACCTGACCGACGGCATTAGGGTTCTAGCGATCGAGGGGGC-GCGGCGTATGCGCACATGAAGTTC
* *
13076897 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAATCTCGAGAACTCACA
194 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
13076962 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATG
13077027 GGGAAACTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
324 GGGAAACTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
13077092 TATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACTCCTTCCGAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACTCATTCCGAAAAAA
* * * *
13077157 TTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCAAACCACAAAAAGTTTAAAAAATAATGAAAAATAGAAAACAAGTCGTCTTGC
* *
13077222 CATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGATTTACAAGCCATAAAAATGGCATTG
519 CATGAAACTTCACGTCAAGGCCTAAAGGACCATTGTACGATTTACAAGCCATAAAAATGGCATTG
* * *
13077287 GAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
584 GAACGCAGAAATATGAAGATATGCCTAAACCCACCTACCAACCTATCGATCCATGGCTTGCGCAT
* * * ** * *
13077352 -CC-CGTCTCT-CTGGC-TAATG-TA-GTGCCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
649 CCCACCTCTCTACCGGCATAATGCCACCCGCCC-CTCCGCCCGCTCGTTTCATCGGTTCGCTTAG
*
13077410 GCATACGGAGTTCATTCTCAGTCTAAGATCGAACCAGACCGAGAGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGAACCAGACCGAGAGTTACAGCAGCACATGCTGGG
* * * ** ** * *
13077475 CTTGGGCTTGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCACCGGAGA
65 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGA
* ** *
13077540 ACCTGATCGGTGGCATTAGGGTTCTAGCGATCGAGGGGGC-CGGCGTGTGCGCACATGAAGTGT-
130 ACCTGACCGACGGCATTAGGGTTCTAGCGATCGAGGGGGCGCGGCGTATGCGCACATGAAGT-TC
*
13077603 GATGGGTGCT-GTTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCAC
194 GATGGGTGCTAG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
13077667 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * *
13077732 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
323 GGGGAAAC-TTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
13077797 TGCATGCCAACAAAAATACAAGGATCATGTCTACTAAGTTT-GGGGCCAAAACT-ATTCCCGAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACTCATT-CCG-AA
* ** *
13077860 AAAATTTACAAAATCCCAAACTGCAAAAAGTTTCAAAAATAATGAAAAATAGAAAACAAGTCGTC
450 AAAATTTAAAAAATCCCAAACCACAAAAAGTTTAAAAAATAATGAAAAATAGAAAACAAGTCGTC
* * *
13077925 TTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATT-TACGAATTTACAAGCCATAAAACTGG
515 TTGCCATGAAACTTCACGTCAAGGCCTAAAGGACCATTGTACG-ATTTACAAGCCATAAAAATGG
* *
13077989 CATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCAACCTATTGATCCATGGCTTG
579 CATTGGAACGCAGAAATATGAAGATATGCCTAAACCCACCTACCAACCTATCGATCCATGGCTTG
*
13078054 CGCATCCCACCTCTCTAGCCGGCATAGTGCCCACCCGCCCCTCCGCCCGCTCGTTTCATCGGTTC
644 CGCATCCCACCTCTCTA-CCGGCATAATG-CCACCCGCCCCTCCGCCCGCTCGTTTCATCGGTTC
13078119 GCTTAG
707 GCTTAG
*
13078125 GCATATGGAGTTCATTCCCAGTCTAAGATCG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCG
13078156 GACCGAACTG
Statistics
Matches: 660, Mismatches: 68, Indels: 28
0.87 0.09 0.04
Matches are distributed among these distances:
705 3 0.00
706 162 0.25
707 294 0.45
708 125 0.19
709 6 0.01
711 4 0.01
712 4 0.01
714 2 0.00
715 59 0.09
716 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAACCAGACCGAGAGTTACAGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTAGGGTTCTAGCGATCGAGGGGGCGCGGCGTATGCGCACATGAAGTTCGA
TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GAAACTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACTCATTCCGAAAAAATT
TAAAAAATCCCAAACCACAAAAAGTTTAAAAAATAATGAAAAATAGAAAACAAGTCGTCTTGCCA
TGAAACTTCACGTCAAGGCCTAAAGGACCATTGTACGATTTACAAGCCATAAAAATGGCATTGGA
ACGCAGAAATATGAAGATATGCCTAAACCCACCTACCAACCTATCGATCCATGGCTTGCGCATCC
CACCTCTCTACCGGCATAATGCCACCCGCCCCTCCGCCCGCTCGTTTCATCGGTTCGCTTAG
Found at i:13078759 original size:26 final size:26
Alignment explanation
Indices: 13078729--13078781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13078719 GTTGACTTAG
*
13078729 GCATAAGGAGTTCATTCCCAGTTTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
13078755 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
13078781 G
1 G
13078782 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:13078813 original size:445 final size:447
Alignment explanation
Indices: 13077966--13078847 Score: 1082
Period size: 445 Copynumber: 2.0 Consensus size: 447
13077956 GACCATTTAC
*
13077966 GAATTTACAAGCCATAAAACTGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTA
1 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTA
*
13078031 CCAACCTATTGATCCATGGCTTGCGCATCCCACCTCTCTAGCCGGCATAGTGCCCACCCGCCCCT
66 CCAACCTATCGATCCATGGCTTGCGCATCCCACCTCTCTAGCCGGCATAGTGCCCA------CCT
* * *
13078096 CCGCCCGCTCGTTTCATCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCG
125 CCGCCCACTCATTTCATCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCG
* * * * * * *
13078161 AACTGAGGGTTGCGACAGCAGGATCAGCAGAACGCAGAGGGGGACCTGATCGATCCCCGACTTGT
190 AACAGAGGGTTACGACAGCAGGATCAGCAGAACGCAGAAGGGGACCCGACCAATCCCCGACTTGC
* * * *
13078226 GCATCCTGCCCCTCTGGCCGACTAAGCCCCCGCACGCTCGTTTCATGGGTTGACTTTGGGATACA
255 GCATCCCGCCCCTCTGGCAGACTAAGCCCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
* * ** *
13078291 GAGTTCATTCTCAATCTAAGCATATAGAGTTCATTCCCAGTCTAAAATTGGATCGGATCGAGGGT
320 GAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGATCGGACCGAGGGT
* *
13078356 TGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTTGGGGACATTGTAT
385 TACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTGGGGACATTGTAT
* *
13078419 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
1 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTA
* * ** * * **
13078484 CCACCCTATCGATCCATGTCTTGCGCATCCCGTCTCTCTGGTCGG-AGTAGTGCTTA-C-CCGCC
66 CCAACCTATCGATCCATGGCTTGCGCATCCCACCTCTCTAGCCGGCA-TAGTGCCCACCTCCGCC
* * *
13078546 CACTCATTTCGTCGG-TCGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGACA
130 CACTCATTTCATCGGTTC-GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGAACA
* * * * * * * *
13078610 GAGGGTTAC-AGTAGTAGGCTC-GACCGCACGTAGAAGGGGACCCGACCAATCCTCGGCTTGCGC
194 GAGGGTTACGA-CAGCAGGATCAG-CAGAACGCAGAAGGGGACCCGACCAATCCCCGACTTGCGC
* * *
13078673 ATCCCGCCCCTCTGGCTAG-CTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATA-AG
257 ATCCCGCCCCTCTGGC-AGACTAAGCCCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA-
* * * *
13078736 GAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGG
320 GAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGATC-GGACCGAGGG
** *
13078800 TTACGGA-AGCACATGCTGGGCTTGGGCATGTGCTGGTGCCATATTTTT
384 TTAC-GACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTT
13078848 AATCACCGGG
Statistics
Matches: 367, Mismatches: 54, Indels: 24
0.82 0.12 0.05
Matches are distributed among these distances:
444 6 0.02
445 249 0.68
446 4 0.01
452 1 0.00
453 107 0.29
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (447 bp):
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTA
CCAACCTATCGATCCATGGCTTGCGCATCCCACCTCTCTAGCCGGCATAGTGCCCACCTCCGCCC
ACTCATTTCATCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGAACAGA
GGGTTACGACAGCAGGATCAGCAGAACGCAGAAGGGGACCCGACCAATCCCCGACTTGCGCATCC
CGCCCCTCTGGCAGACTAAGCCCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
ATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGATCGGACCGAGGGTTACGAC
AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTGGGGACATTGTAT
Found at i:13082052 original size:25 final size:26
Alignment explanation
Indices: 13082014--13082065 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13082004 GTTGACTTAG
13082014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13082040 GCATA-GGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13082065 G
1 G
13082066 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13082469 original size:909 final size:902
Alignment explanation
Indices: 13079521--13084357 Score: 5334
Period size: 881 Copynumber: 5.4 Consensus size: 902
13079511 TGGACCGAGG
* * * * * *
13079521 GTGCGCATATGATGTGTGATTGGTGCTAGTAGTTGGCCCTTATATTGGCCCCATATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * *
13079586 AACCTTGAGAAGTCACACCCCCTTAAAAAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA
13079651 TTAAAGTGTCTGAAATGGGGACACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
131 TTAAAGTGTCTGAAATGGGGACAC--TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
** *
13079716 TTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
194 TTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* ** * *
13079781 AACAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTCCAAAAATCATGAAAAA
258 AAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* *
13079846 TAGAAAGCGAGTCGTCTTGGCCGATGAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
323 TAGAAAACGAGTCATCTT-GCC-ATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
13079911 TT-CACGCCAT-AAAATGG-A-TGGCAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
385 TTACAAGCCATAAAAATGGCATTGGC-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* ** *
13079972 CCC-ATCGATCCATGGCTTGCTGCATCACGT-TC-CT-----C----TG-CCG-CCA-TAG--TG
449 CCCTATCGATCCACGGCTTGC-GCATC-CGTCTCTCTGGCAGCGTAGTGCCCGCCCACCCGCCCG
* * * *
13080020 GCCACTCGT--TTTGCATCGGTTGGCTTAGGACAATACGTAGTTCATTCCCAGTCTAAGATCAGA
512 CCCGCTCGTCGTTT-CGTCGGTTGGCTTAGG-C-ATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
13080083 CGCAGGACCGAAGGTTGCGGCAGCAGGATC-GCAGGCACACA-AGAGGGGATCTG-TC-ATTTCC
574 C-CA-GACCGAGGGTTGCGGCAGCAGGATCGGCA-GCACACAGAG-GGGGACCCGACCGA-TCCC
* * * *
13080144 CGGCTTGCGCATCCCA-CCCTTTGGCCGGCTGAGTGGGTCCGGGCACGTTCG-TTC-TGGGTTGA
634 CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA--GCG-CC-CGCACGCTCGTTTCGTGGGTTGA
* *
13080206 C-TAGGCACTA-GGAGTTTCATTCTCAGTCTAAGCA-ATGGAGTTCATTCCCACGTCTAAGATC-
695 CTTAGGCA-TACGGAG-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-GTCTAAGATCG
* * * * ** * *
13080267 GAACTGAACCAATGGTTGCGACAGCACATGCTGGGCTCAGGCATTTGCTGATG-CTGCATTTTTC
757 GACCAG-ACCGAGGGTTGCGACAGCACATGCTGGG-TTGGGCATGTGCTGGTGTC-GCATTTTTC
** * * * ** * * * *
13080331 TTTGTCGGGGCACCATCGCCAGAGCATTGCTGGAGAACCTGACCGACGACATTGGGTTTCCAACG
819 TTCATCGGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
13080396 ATCGGGGGGGCCGGGGCGGGT
884 ATCGGGGGGGCC-GGG-GGGT
* * *
13080417 GTGCACACATGATGTACGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
13080482 AACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTT--TG-C--T-GCC-
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA
* *
13080539 ----AG-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCAAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * ** **
13080599 TAGCTGAAATTTTTT-TGGTATGCCAACAAAATTATAAGGATCACGTCTACCGTGTTTCAGGCCA
196 TAGCTG-AATTTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * **
13080663 AAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAGAAA
259 AAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAA-AAA
* * *
13080728 -AGAAAACGAGTCGTCTTGCCATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTA
323 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* **
13080792 CAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGAATAAACCCACCTACCACCCT
388 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * **
13080857 ATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAATGCCCGCCCACCCGTTCGCCCG
453 ATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGG-CAGCGTAGTGCCCGCCCACCCGCCCGCCCG
* * *
13080922 CT--T-ATTT-GATCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCAGAT
516 CTCGTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * *
13080983 CGAGGGTTGTGGCAGCAGGATCAGCAGCACATAGAGGGGGACCC-AGTCGATCCCTGGATTGTGC
580 CGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGC
* *
13081047 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
644 ATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* ** * *
13081112 GTTCATTCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGTGGGTTG
709 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
** * * * ** * *
13081177 CGGTAGCACATGCTTGGCTTGGGCATGAGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCAT
774 CGACAGCACATGC-TGGGTTGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCAC
* * * *
13081242 CGGAGCATCGCCAGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGGT
838 CGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* * *
13081307 GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCATTATATTGGCCCCATATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
13081372 AACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA
* * *
13081437 TTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
13081502 TACCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-AAAGTTTGGGGCCAA
196 TAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
13081566 AAATCCTTCCAAAAAAATTGTGAAATATCCTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATA
260 AAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
13081631 GAAAACGAGTCATCTTGCCATTG-AACTTTACGTGAAGGCTTAAAGGACCATTGTATGAATTTAC
325 GAAAACGAGTCATCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
13081695 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
389 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
13081760 TCGATCCACGGCTTGCGCATCCGATCTCACTGGCAAGCGTAGTGCCCGCCCGCCCACCCCGCCCG
454 TCGATCCACGGCTTGCGCATCCG-TCTCTCTGGC-AGCGTAGT----GCCCGCCCA-CCCGCCCG
* *
13081825 CCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
512 CCCGCTCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** * *
13081890 AAACCGAGGGTTGCTGCAGTAGGATCGGCAGCATGCAGACGGGGACCCGACCGATCCCCAGCTTG
576 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTG
13081955 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
641 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
13082020 GGAGTTCATTCCCAGTCTAAGCATA-GGTGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGG
706 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
** *
13082084 TTGCGGTAGCACATGCTGGGTTAGGGCATGTGCTGGTGTCGCA-TTTTCTTCATCGAGGCACCAT
771 TTGCGACAGCACATGCTGGGTT-GGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCAT
* * *
13082148 CACCGAAGCATCGTC-GTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGG
835 CACCGGAGCATCGCCAG-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
13082212 GGGT
899 GGGT
*
13082216 GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
13082281 AACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC-GCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA
* *
13082345 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
13082410 TAGCTGAAGTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
196 TAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *** * *
13082475 AACAT-TTTTTGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCGAACATCATGAAAAA
260 AA-ATCCTTCCAAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* *
13082538 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTA
323 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
13082603 CAAGCCATAAGAATGGCATTAGCATGCAGAAATATGAAGATGTGCC-AAAACCACCTACCACCCT
388 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
13082667 ATCGATCCACGGCTTGCGGATCCCGTCTCTCTAGCCGGCGTAGTGCCCG----CCCGCCCGCTCG
453 ATCGATCCACGGCTTGCGCAT-CCGTCTCTCT-GGCAGCGTAGTGCCCGCCCACCCGCCCGCCCG
* * * *
13082728 CTCGCTCGTTTCATCAGTTAGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAAATCAGACCAGA
516 CTCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGA
* * * * * * * * *
13082792 TCAAGGGTTACGGTAGCAAGATCGGTAGCACACAGAGGGGGACCC-AGCCTATTCCCGGCTTGCA
579 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCG
* * * **
13082856 CAT-CCAGCCCTCTGG-CGGTTG-GC-CTCGCACGC-CGTTT-GATGGGTTGACTTATGGTGTAC
643 CATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTA-GGCATAC
*** * * * *
13082915 -GA-TTCATT-CCAGTCTCCCCATACAGAGTTCATTCCCAGTCTAAGCTCGGATCAGACCGTGTG
706 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG-G
* * * * * *
13082977 GTT-CGACAGCACATGCT-TGCTGGG-ATGTG-TTGT-TCGCATTTTTC-TCGTTGGGGAACCAA
770 GTTGCGACAGCACATGCTGGGTTGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACC--
* * * * * ** * *
13083036 ATCACCGGAGCAT-TCCAGAGAACCT-AGCGTGGTGGCTTTAGTTCCGGTTTTTGGCAATC-GGG
833 ATCACCGGAGCATCGCCAGAGAACCTGA-C-CGGCGGC---A-TT-GGGGTTCCGACGATCGGGG
*
13083098 GGGCGGGGGGGT
891 GGGCCGGGGGGT
* * *
13083110 GTGCG--CATGAT-TG-GTAT--GAGCTTGTACTT-GCCCTTATATTGG-CCCCTAT-CCACATC
1 GTGCGCACATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
13083166 AAACCTTG-GAACTCA-A-ACCCTTAAAGAGCATTT-AGATTTTA-TAG-TT--TG-CA-TAGCC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
* *
13083221 --TAAAGTGTTTGAAATGGGGGGACACTTTGTTTTCAAATGGCCACAAAATCTTGTACACTTCGA
130 ATTAAAGTGTCTGAAAT--GGGGACAC-TT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * **
13083284 TTTTTGTAGTCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTG
191 GTTTT-TAG-CTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
13083349 GGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAAT-CTGGAACCGTAAAATGTTTCAAAAATCAT
253 GGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCAT
* * *
13083412 AAAAAATAGAAAACGAGTCATCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGATCATTGTATG
317 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
13083477 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACACACCTAC
382 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
13083542 CACCCTATCGATCCACAGCTTGCGCATCCTGTCTTTCTGGCCGACGTAGTGCCCACCCACCTGCC
447 CACCCTATCGATCCACGGCTTGCGCATCC-GTCTCTCTGGCAG-CGTAGTGCCCGCCCACCCGCC
* * * * * * *
13083607 TG-CC-CT-TTCGTTTAGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCCACGATTAGAC
510 CGCCCGCTCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * ** *
13083669 CGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTT
575 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTT
* * * ** * * * *
13083734 GCGCATCCTACCCCTCTGGTCGGATGAGCGCCTACACGCTTGTTTCATGGGTTAACTTAGGCAGA
640 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * *
13083799 TGGAGCTCATT-CCATTCTAAGCATATGGAGTTCATTCCAAGTCTAAGATCGGACCAGATCGAGG
705 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * * * *
13083863 GTTGCGACAGCACATGCTGGGCTCGAGCATGTGCCGATGTCGCATTTTTCTTCATCGGGGCACCG
770 GTTGCGACAGCACATGCTGGG-TTGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCA
** * * * * * *
13083928 TCGTCGGAGCATTGCCGGAGAACTTGACCAGCGGCATTAGGGTTCCGACGATCGGGGGGGTCGGG
834 TCACCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
13083993 GGGT
899 GGGT
* * *
13083997 GTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCACTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
13084062 AACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA
* * *
13084127 CTAAAGTGTTTGAAATGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * **
13084192 TAGCTGAATTTTTTATGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTCAGGGCCAAA
196 TAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
13084257 ACA-CCTTCCAAAAAAAATTTATAAAATCTTGAACCGTAAAAAGTTTCAAAAAATCATGAAAAAT
261 A-ATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-AAAAATCATGAAAAAT
* *
13084321 AGAAAATGAGTCATCTTGCCATGACACTTCACGTGAA
324 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
13084358 TGAACTGTAG
Statistics
Matches: 3335, Mismatches: 447, Indels: 312
0.81 0.11 0.08
Matches are distributed among these distances:
875 14 0.00
877 13 0.00
878 42 0.01
879 46 0.01
880 173 0.05
881 414 0.12
882 46 0.01
883 42 0.01
884 6 0.00
885 22 0.01
886 43 0.01
887 87 0.03
888 30 0.01
889 39 0.01
890 147 0.04
891 35 0.01
892 224 0.07
893 133 0.04
894 100 0.03
895 41 0.01
896 122 0.04
897 12 0.00
898 32 0.01
899 126 0.04
900 56 0.02
901 45 0.01
902 271 0.08
903 132 0.04
904 10 0.00
905 12 0.00
906 9 0.00
907 27 0.01
908 171 0.05
909 362 0.11
910 66 0.02
911 183 0.05
912 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (902 bp):
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
AATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCGTCTCTCTGGCAGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
TTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCAC
CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGC
ACATGCTGGGTTGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCAT
CGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
Found at i:13084508 original size:26 final size:26
Alignment explanation
Indices: 13084472--13084522 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13084462 TGACTTAGGG
* *
13084472 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCACTCCCAGTCTAAGC
13084498 ATACGAAGTTCACTCCCAGTCTAAG
1 ATACGAAGTTCACTCCCAGTCTAAG
13084523 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCACTCCCAGTCTAAGC
Found at i:13084975 original size:664 final size:666
Alignment explanation
Indices: 13083690--13085020 Score: 1802
Period size: 664 Copynumber: 2.0 Consensus size: 666
13083680 TTGCGGCAGC
** * *
13083690 AGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTACCCCTCTGGTC
1 AGGATCGGCAGCACACAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGTC
* * * * * *
13083755 GGATGAGCGCCTACACGCTTGTTTCATGGGTTAACTTAGGCAGATGGAGCTCATTCCATTCTAAG
66 GGATGAGCACCCACACGCTCGTTTCATGGGATAACTTAGGCAGACGGAGCTCATTCCAGTCTAAG
* * * * * *
13083820 CATATGGAGTTCATTCCAAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCACATGCTGGGC
131 CATACGAAGTTCACTCCAAGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCACATGCTGGGC
* **
13083885 TCGAGCATGTGCCGATGTCGCATTTTTCTTCATCGGGGCACCGTCGTCGGAGCATTGCCGGAGAA
196 TCGAGCATGTGCCGATGTCGCATATTTCTTCAT---------GTCGTCGGAGCATCACCGGAGAA
* * * * *
13083950 CTTGACCAGCGGCATTAGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
252 CCTGACCAGCGGCATTAGGGTTCCGACGAACAGGGAGGCCGGGGGGTGTGCGCACATGATGTGCG
*
13084015 ATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACAC
317 ATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCGAGAAATCACAC
* * * * * * *
13084080 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAATGG
382 CCCCTTAAAGAGCATTTGACATTTTACAAGTTTGCTGCCAATAGCCACTAAAGAGTCTAAAATGG
*
13084145 GTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGC
447 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGC
* **
13084210 ATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTCAGGGCCAAAACACCTTCCAAAAAAAAT
512 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTCAGGGCCAAAACACCTTCCAAAAAAAAT
* *** * * *
13084275 TTATAAAATCTTGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATAGAAAATGAGTCATCTTGC
577 TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAATCATAAAAAATAGAAAACGAGTCATCTTGC
*
13084340 CATGACACTTCACGTGAATGAACTGT
642 CATGA-ACTCCACGTGAATGAACTGT
* * *
13084366 AGGATCGGCAGCACATAGAGGGAGACCCGACCGATCCCCGGCTTGCGCGTCCCACCCCTCTGG-C
1 AGGATCGGCAGCACACAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGTC
* * * * * *
13084430 TGGCTGAGCACCCACACGCTCGTTTCGTGGGATGACTTAGGGATACGGAGTTCATTCCCAGTCTA
66 -GGATGAGCACCCACACGCTCGTTTCATGGGATAACTTAGGCAGACGGAGCTCATT-CCAGTCTA
* *
13084495 AGCATACGAAGTTCACTCCCAGTCTAAGATCGGACCGGACCAAGGGTTAC-AGCAGCACATGCTG
129 AGCATACGAAGTTCACTCCAAGTCTAAGATCGGACCAGACCAAGGGTTACGA-CAGCACATGCTG
* * * *
13084559 GGCTCGGGCATGTGCTGGTG-C-CATATTT-TTC-T-TCGTTGGAGCATCACCGGAGAACCTGAC
193 GGCTCGAGCATGTGCCGATGTCGCATATTTCTTCATGTCGTCGGAGCATCACCGGAGAACCTGAC
*
13084619 C-GACGGCATT-GTGGTTCCGACGAACAGGGATGCCGGGGGGGTGTGCGCACATGATGTGCGATG
258 CAG-CGGCATTAG-GGTTCCGACGAACAGGGAGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* * *
13084682 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACACCCC
320 GGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCGAGAAATCACACCCC
* *
13084747 CTTAAAGAGCATTTGACATTTTACAAGTTTGCTGCCAATAGCTATTAAAGAGTCTAAAATGGGGA
385 CTTAAAGAGCATTTGACATTTTACAAGTTTGCTGCCAATAGCCACTAAAGAGTCTAAAATGGGGA
13084812 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
450 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCAT
* * *
13084877 GCCAACAAAAATACAAGGATCACATCTACCAAGTT-TGGAGCCAAAACTCCTTCCAAAAAAATTT
514 GCCAACAAAAATACAAGGATCACATCTACCAAGTTCAGG-GCCAAAACACCTTCCAAAAAAAATT
*
13084941 TAAAAAATCCCAAACTGCAAAAAGTTTC-AAAAATCATAAAAAATAGAAAACGAGTCATCTTGCC
578 TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAATCATAAAAAATAGAAAACGAGTCATCTTGCC
13085005 ATGAACTCCACGTGAA
643 ATGAACTCCACGTGAA
13085021 GGCTTAAGGG
Statistics
Matches: 578, Mismatches: 69, Indels: 29
0.86 0.10 0.04
Matches are distributed among these distances:
662 2 0.00
663 60 0.10
664 236 0.41
665 89 0.15
673 1 0.00
674 3 0.01
675 7 0.01
676 102 0.18
677 78 0.13
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (666 bp):
AGGATCGGCAGCACACAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGTC
GGATGAGCACCCACACGCTCGTTTCATGGGATAACTTAGGCAGACGGAGCTCATTCCAGTCTAAG
CATACGAAGTTCACTCCAAGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCACATGCTGGGC
TCGAGCATGTGCCGATGTCGCATATTTCTTCATGTCGTCGGAGCATCACCGGAGAACCTGACCAG
CGGCATTAGGGTTCCGACGAACAGGGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
AGTACTTGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCGAGAAATCACACCCCCTTAAA
GAGCATTTGACATTTTACAAGTTTGCTGCCAATAGCCACTAAAGAGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACA
AAAATACAAGGATCACATCTACCAAGTTCAGGGCCAAAACACCTTCCAAAAAAAATTTAAAAAAT
CCCAAACCGCAAAAAGTTTCAAAAAATCATAAAAAATAGAAAACGAGTCATCTTGCCATGAACTC
CACGTGAATGAACTGT
Found at i:13085383 original size:26 final size:26
Alignment explanation
Indices: 13085353--13085403 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13085343 TGACTTAGGG
*
13085353 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
13085379 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
13085404 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:13086734 original size:903 final size:885
Alignment explanation
Indices: 13084371--13086806 Score: 3272
Period size: 881 Copynumber: 2.7 Consensus size: 885
13084361 ACTGTAGGAT
* * * *
13084371 CGGCAGCACATAGAGGGAGACCCGACCGATCCCCGGCTTGCGCGTCCCACCCCTCTGGCTGGCTG
1 CGGCAGCACGTAGAAGAAGACCCGACCGATCCCCGGCTTGCGCGTCCCGCCCCTCTGGC-GGCTG
*
13084436 AGCACCCACACGCTCGTTTCGTGGGATGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATA
65 AGCACCCACACACTCGTTTCGTGGGATGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
13084501 CGAAGTTCACTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACAGCAGCACATGCTGGGCTCGG
130 CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGG
* * *
13084566 GCATGTGCTGGTGCCATATTTTTCTTCGTTGGAGCA-TC----A--CCGGAGAACCTGACCGACG
195 GCATGTGCTGGTGCCATAATTTTCTTTGTCGGA-CATTCGGAGATTCCGGAGAACCTGACCGACG
*
13084624 GCATTGTGGTTCCGACGAAC-AGGGATGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
259 GCATTGTGGTTTCGACGAACGAGGGATGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
13084688 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAA
324 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
13084753 GAGCATTTGACATTTTACAAGTTTGCTGCCAATAGCTATTAAAGAGTCTAAAATGGGGACACTTT
389 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTT
13084818 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
454 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
* *
13084883 AAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
519 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAA
* *
13084948 TCCC-AAACTGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCATCTTGCCATG-AAC
584 TCCCGAAAC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* **
13085011 TCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCATGCA
648 TCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGCCATTGGCACACA
* *
13085076 GAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCT
713 GAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCT
* * * *
13085141 TTCTGGCCGACGTAGTACCCGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGC
778 TTCTGGCCAACGTAGT---CGCCCACCCGCCCACCCGCCCGCTCGTTTAGTCGGTTGGCTTAGGC
** * * * *** *
13085206 ATATGGAGTTTATTTCCAGTCTAAGATCGAATTGGACCGAGGGTTA
840 ATACAGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAAGGTTA
* *
13085252 CGGCAGCACGTAGAGGGAGACCCGACCGATCCCCGGCTTGCGCGTCCCGCCCCTCTGGCCGGCTG
1 CGGCAGCACGTAGAAGAAGACCCGACCGATCCCCGGCTTGCGCGTCCCGCCCCTCTGG-CGGCTG
* *
13085317 AGCGCCCACACACTCGTTTCATGGGATGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATA
65 AGCACCCACACACTCGTTTCGTGGGATGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATA
*
13085382 CGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGG
130 CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGG
* * *
13085447 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGAGCA-TC----A-T-CGGAGAACCTGACCGACG
195 GCATGTGCTGGTGCCATAATTTTCTTTGTCGGA-CATTCGGAGATTCCGGAGAACCTGACCGACG
* *
13085505 GCATTGTGGTTTCGATGAACG-GGGATGCCGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCT
259 GCATTGTGGTTTCGACGAACGAGGGATGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
13085569 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
324 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
13085634 GAGCATTTGAGATTTTGCAAGTTTGCTGCCAGTAGCCATTAAAAAGTCTGAAATGGGGACCCTTT
389 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTT
*
13085699 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGATGCATGCCAAC
454 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
*
13085764 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAA
519 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAA
*
13085828 ATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
583 ATCCCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* *
13085893 TCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACATA
648 TCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGCCATTGGCACACA
* *
13085958 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
713 GAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCT
* **
13086023 TTCTGGCCAACGTAGT-GCCCACCCAG-CCGCCCGCCCTTTCGTTTAGTCGGTTGGCTTAGGCAT
778 TTCTGGCCAACGTAGTCGCCCACCC-GCCCACCCGCCCGCTCGTTTAGTCGGTTGGCTTAGGCAT
* * *
13086086 ACAGAGTTCATTCCCAATCTACGATC-AGACCAGACTGAAGGTTG
842 ACAGAGTTCATTCCCAATCTAAGATCGA-ACCAGACCGAAGGTTA
* * * * **
13086130 CGGCAGCAGGATCAACAGCACACAAAAGAAGACCCGACCGATCCCCGACTTACGCATCATGCCCC
1 CGGCAGCACG-T----AG-------AAGAAGACCCGACCGATCCCCGGCTTGCGCGTCCCGCCCC
* * * * * * *
13086195 TCTGGTCGACTGAGCTCCCACACACAT-GTTTCGTGGGTTAACTTAGGCAGACGGAGCTCATTCC
54 TCTGG-CGGCTGAGCACCCACACAC-TCGTTTCGTGGGATGACTTAGGGATACGGAGTTCATTCC
* * * * * *
13086259 CATTCTAAGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAC
117 CAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAC
* * * *
13086324 ATGCTGGGCTCGAGCATGTG-TCGATGTCGTAATTTTCTTTGTCGGGGCACCATCGTCGGAGTAT
182 ATGCTGGGCTCGGGCATGTGCT-GGTGCCATAATTTTCTTTGTC--GG-A-CAT--TCGGAG-AT
* * * *
13086388 TGCCGGAGAACCTGACC-AGCGGCATTAG-GGTTTCGACGATCGAGGG-GGTC-GGGGGCTGTGC
239 T-CCGGAGAACCTGACCGA-CGGCATT-GTGGTTTCGACGAACGAGGGATGCCGGGGGGGTGTGC
* * * *
13086449 GCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCACTCATCAAACC
301 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * * * *
13086514 TCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCACTAA
366 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
* * * * *
13086579 AGTGTTTGAAATGGGTACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGC
431 AGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * ** * *
13086644 TGAATTTTTTTACGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTCGGGGCCAAAACA
496 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
* * *
13086709 CCTTTCAAAAAAATTTTATAAAATCCTGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATAGAA
561 CCTTTCAAAAAAATTTTAAAAAATCCCGAAACGTAAAAAGTTTC-AAAAATCATGAAAAATAGAA
* *
13086774 AATGAGTCATCTTGCCATGAAACTTCACGTGAA
625 AACGAGTCATCTTGCCATGAAACTCCACGTGAA
13086807 TGAACTGCAG
Statistics
Matches: 1386, Mismatches: 128, Indels: 59
0.88 0.08 0.04
Matches are distributed among these distances:
877 1 0.00
878 78 0.06
879 2 0.00
880 2 0.00
881 596 0.43
882 143 0.10
883 2 0.00
889 1 0.00
890 178 0.13
891 1 0.00
892 2 0.00
893 3 0.00
896 2 0.00
901 1 0.00
902 1 0.00
903 280 0.20
904 89 0.06
905 4 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (885 bp):
CGGCAGCACGTAGAAGAAGACCCGACCGATCCCCGGCTTGCGCGTCCCGCCCCTCTGGCGGCTGA
GCACCCACACACTCGTTTCGTGGGATGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATAC
GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCATAATTTTCTTTGTCGGACATTCGGAGATTCCGGAGAACCTGACCGACGGC
ATTGTGGTTTCGACGAACGAGGGATGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATC
CCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTCC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGCCATTGGCACACAGAA
ATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTTTC
TGGCCAACGTAGTCGCCCACCCGCCCACCCGCCCGCTCGTTTAGTCGGTTGGCTTAGGCATACAG
AGTTCATTCCCAATCTAAGATCGAACCAGACCGAAGGTTA
Found at i:13089444 original size:26 final size:26
Alignment explanation
Indices: 13089408--13089460 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13089398 GTTGACTTAG
13089408 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13089434 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13089460 G
1 G
13089461 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13090336 original size:26 final size:26
Alignment explanation
Indices: 13090300--13090351 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13090290 TGACTTAGGC
*
13090300 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
13090326 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
13090352 TCAGATCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:13090890 original size:893 final size:898
Alignment explanation
Indices: 13088554--13091011 Score: 3364
Period size: 896 Copynumber: 2.8 Consensus size: 898
13088544 AGGCATATGG
* * *
13088554 AGTTCATTCCCAATCTAAGATCAGATTGGACCGAGGGTTAC-AGCAGCACATGTTGGGCTTGAGC
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGA-CAGCACATGCTGGGCTTGAGC
* *
13088618 ATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAC
65 ATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAT
* *
13088683 CGGCGGCATTGGGGTT-C---A---GGCGA-TCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
130 CGGCGGCATTGGGGTTCCGGGATCGGGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
13088740 GCTGGCACTTGGCCCTTATATTAGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
13088805 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
13088870 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTG--TG
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGTGCATG
* **
13088933 CCAATAAAAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCCTTTTGAAAAAATTTT-
389 CCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATTTTA
* * *
13088997 ---AATCTTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
453 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
13089059 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
13089124 CGCAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCC
583 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-GTTGCGCATCCC
** ** * *
13089189 GTCTCTCTGGCC-GTATAGTG-CCATCCG-TCCGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAAG
647 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCCGCCCGCCCATTTGTTTCATCGGTTGGCTTAAG
* * * * ** *
13089251 CAAACAGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCAGGATTGACAG
712 CAAACAGAGTTCATTCCCAATCTAAGATCAGATCAGACCAAGGGTTGACGCAGCAGG--TCACAG
* * ** * *
13089316 CATGGAGAGGGGGACCCAGCCGATCCCAGGCTTGCGTATCCCCCCCTCTGGTTGGCTGAGCGCCC
775 CA-GGAGA-GGGGACCCAGCCGATCCCAGGCTTACGCATCCCCCCCTCTGGCCGGCTAAGCACCC
* * * *
13089381 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGG
838 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGA
* * * * *
13089442 AGTTCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTATGGCAGCACATACTGGGCTTGAGA
1 AGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTACGACAGCACATGCTGGGCTTGAGC
* * * *
13089506 ATGTGCTGGTGCCGTATTTTTTTTCACCGAGACACCATCGTCAGAGCATCGCTGGAGAACCTGAT
65 ATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAT
* * *
13089571 CGACGTCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
130 CGGCGGCATTGGGGTTCCGG-GATCGGGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
13089635 CGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* **
13089700 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGTTTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
* * * * *
13089765 CTTTTTTCAAATAGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-CTTTTTTATGCATG
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATG
* * * *
13089829 CCAAAAAAAATACAAGGATCTCGTCTACCATGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
389 CC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATTTTA
* * *
13089894 AAAAATC-CTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
453 AAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
13089958 GAAACTTCATGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
13090023 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTGTGCATCCC
582 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTGCGCATCCC
** *
13090088 GTGGCTCTGGCCGGCGTAGTGCCCGCCCGCT-CGCCCGCCCATTTGTTTCATCGGTTGGCTTAGG
647 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCCGCCCGCCCATTTGTTTCATCGGTTGGCTTAAG
* ** * *
13090152 CATATGGAGTTCATTCCCAATCTAAGATTAGA-CTAGACCGAGGGTT-ACG-A-CA-G-CACA-C
712 CAAACAGAGTTCATTCCCAATCTAAGATCAGATC-AGACCAAGGGTTGACGCAGCAGGTCACAGC
* *
13090210 A-GAGA-GGGACCC-GATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCACCCG
776 AGGAGAGGGGACCCAG-CCGATCCCAGGCTTACGCATCCC-CCCCTCTGGCCGGCTAAGCACCCG
* *
13090272 CATGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGA
839 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGA
* * * * *
13090332 AGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTACGACAACACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTTGAGCA
* * ** * * * *
13090397 TATGCTAGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTAATC
66 TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGATC
* *
13090462 GGCGGCATTGGGGTTCCGGTGATCGGGGGAGCCGGGAGGGGTGTGCGCACATAATGTGCGATGAG
131 GGCGGCATTGGGGTTCCGG-GATCGGGGGAGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGG
* * *
13090527 TTCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
13090592 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
* * ** *
13090657 C-TTTTTCCAATGGACACAAAATCGCGTACACTTCGAGTTTTTAGTTGAATTTTTTTTGTGCATG
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATG
*
13090721 CCAACAAAATATACAAGGATCAAGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATTTT
389 CCAA-AAAA-ATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
13090786 AAAAAATCTCAAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAT
452 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
13090851 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
13090916 ATGTAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
582 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGCGCATCC
* * * *
13090981 TGCCTCTCTGGCCGACGTAGTACCCGCCCGC
646 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
13091012 CCACCCACCC
Statistics
Matches: 1376, Mismatches: 161, Indels: 60
0.86 0.10 0.04
Matches are distributed among these distances:
888 128 0.09
889 27 0.02
890 209 0.15
891 49 0.04
892 164 0.12
893 223 0.16
894 41 0.03
895 5 0.00
896 258 0.19
897 4 0.00
898 2 0.00
899 21 0.02
900 174 0.13
901 70 0.05
902 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (898 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTTGAGCA
TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGATC
GGCGGCATTGGGGTTCCGGGATCGGGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCC
AAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCTCCGCCCGCCCATTTGTTTCATCGGTTGGCTTAAGCAAA
CAGAGTTCATTCCCAATCTAAGATCAGATCAGACCAAGGGTTGACGCAGCAGGTCACAGCAGGAG
AGGGGACCCAGCCGATCCCAGGCTTACGCATCCCCCCCTCTGGCCGGCTAAGCACCCGCACGCTC
ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGA
Found at i:13091040 original size:15 final size:15
Alignment explanation
Indices: 13091020--13091049 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
13091010 GCCCACCCAC
13091020 CCGCCCGCTCGTTTT
1 CCGCCCGCTCGTTTT
13091035 CCGCCCGCTCGTTTT
1 CCGCCCGCTCGTTTT
13091050 GTTGGTGGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.47, G:0.20, T:0.33
Consensus pattern (15 bp):
CCGCCCGCTCGTTTT
Found at i:13092519 original size:719 final size:718
Alignment explanation
Indices: 13090326--13093262 Score: 4238
Period size: 719 Copynumber: 4.1 Consensus size: 718
13090316 CAGTCTAAGA
* * * * ** * *
13090326 ATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTACGACAACACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * * * * *
13090391 CGGGCATATGCTAGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
66 CGGGCATGTGCTGGTGCC-CAATTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAAC
* * ** * * * *
13090456 CTAATCGGCGGCATTGGGGTTCCGGTGATCGGGGGAGCCGGGAGGGGTGTGCGCACATAATGTGC
130 CTGACCGGCGGCATTGGGGTTCTAGCGATCGGGAGTGCCGGG-GGGGTGTGCGCACATGATGTGC
* * * *
13090521 GATGAGTTCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
13090586 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTG-TCTAAAAT
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTC-GAAAT
* * ** * *
13090650 GGGGACAC-TTTTTCCAATGGACACAAAATCGCGTACACTTCGAGTTTTTAGTTGAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTT
* * *
13090714 GTGCATGCCAACAAAATATACAAGGATCAAGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAA
387 GTGCATGCCAACAAAA-ATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAA
* * * * *
13090779 AAATTTTAAAAAATCTCAAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
13090844 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * *
13090909 CATTGGCATGTAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTA
* * * * *
13090974 CGCATCCTGCCTCTCTGGCCGACGTAGTACCCGCCCGCCCACCCACCCGCCCGCTCGTTTTCCGC
646 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG----TCCTCCCG--C-C-CG--TT----
* * *
13091039 CCGCTCGTTTTGTTGGTGGGCTTAGGC
693 -CGCTCGTTTCGTCGGTTGGCTTAGGC
* * * **
13091066 ATATGGAGTTCTTTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * * * * *
13091131 TGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTG-CCCAATTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAAC
*
13091196 CTGATCGGCGGCATTGGGGTTC-AG-G--C--GA-T--C-GGGGGGTGTGCGCACATGATGTGCG
130 CTGACCGGCGGCATTGGGGTTCTAGCGATCGGGAGTGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
13091251 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* *
13091316 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGAAATGG
* *
13091381 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
* * * * *
13091446 CGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGATGCGAAAACTCCTTTCAAAAAAA-
390 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAAT
* ** * * * *
13091510 TTT---GAATCTTGAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
13091572 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
13091637 GGCGCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTATGCA
585 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCA
* * * *
13091702 TCCCGTCTCTTTGGCTGGCATAGTGCCCGTCCTCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTT
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCTCCCGCCCGTTCGCTCGTTTCGTCGGTTGGCTT
13091767 AGGC
715 AGGC
* *
13091771 ATACGGAGTTCATTCCCAGTCTCAGATCGGATCGGACCGAGTGTTGTGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
*
13091836 CGGGCATGTGCTGGTGCCCTAATTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAGAAC
66 CGGGCATGTGCTGGTGCCC-AATTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAAC
*
13091901 CTGACCGGCGGCATTGGGGTTCTAGCGATCGGGAGTGCCCAGGGGGG-GTGCGCACATGATGTGC
130 CTGACCGGCGGCATTGGGGTTCTAGCGATCGGGAGTG-CCGGGGGGGTGTGCGCACATGATGTGC
* * *
13091965 GATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCATA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
13092030 CCCCCTTAAAGTGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGAAATG
13092095 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
* *
13092160 GCATGCCAACAAAAATAAAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
389 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAA
*
13092225 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
13092290 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
13092355 TGGCGCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTATGC
584 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGC
* *
13092420 ATCCCGTCTCTTTGGCCGGCGTAGTGCCCGTCCTCCCGCCCGTTCGCTCATTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCTCCCGCCCGTTCGCTCGTTTCGTCGGTTGGCT
13092485 TAGGC
714 TAGGC
*
13092490 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTGTGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* *
13092555 CGGACATGTGCTGGTGCCCTAATTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAGAAC
66 CGGGCATGTGCTGGTGCCC-AATTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAAC
*
13092620 CTGACCGGCGGCATTGGGGTT-TCGGCGATCGGGAGTGCCTGGGGGGG-GTGCGCACATGATGTG
130 CTGACCGGCGGCATTGGGGTTCT-AGCGATCGGGAGTGCC-GGGGGGGTGTGCGCACATGATGTG
* * *
13092683 CGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCAT
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
13092748 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTTCGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGAAAT
*
13092813 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
* *
13092878 TGCATGCCAACAAAAATAAAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
388 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAA
* * *
13092943 ATTTTAAAAAATCCTGAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
** *
13093008 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGCTGTTTGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
13093073 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACG
* *
13093138 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGTCCGTTCGCTCGTTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCTCCCGCCCGTTCGCTCGTTTCGTCGGTTGGC
13093203 TTAGGC
713 TTAGGC
* * * *
13093209 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGCA
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCA
13093263 GGATCGGCAG
Statistics
Matches: 2032, Mismatches: 144, Indels: 63
0.91 0.06 0.03
Matches are distributed among these distances:
704 2 0.00
705 157 0.08
706 2 0.00
707 1 0.00
709 1 0.00
710 1 0.00
711 2 0.00
712 3 0.00
713 1 0.00
714 1 0.00
715 260 0.13
716 15 0.01
718 3 0.00
719 987 0.49
720 5 0.00
724 190 0.09
727 3 0.00
728 46 0.02
729 169 0.08
730 45 0.02
731 1 0.00
734 1 0.00
736 1 0.00
738 1 0.00
739 1 0.00
740 132 0.06
741 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (718 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCCAATTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAACC
TGACCGGCGGCATTGGGGTTCTAGCGATCGGGAGTGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCTCCCGCCCGTTCGCTCGTTTCGTCGGTTGGCTTA
GGC
Found at i:13099939 original size:26 final size:26
Alignment explanation
Indices: 13099902--13099954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13099892 GTTGACTTAG
*
13099902 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13099928 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
13099954 G
1 G
13099955 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13100824 original size:26 final size:26
Alignment explanation
Indices: 13100795--13100847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13100785 GTTGACTTAG
* *
13100795 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAATCTAA
*
13100821 GCATAAGGAGTTCATTCCCAATCTAA
1 GCATAAGAAGTTCATTCCCAATCTAA
13100847 G
1 G
13100848 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAATCTAA
Found at i:13101745 original size:24 final size:25
Alignment explanation
Indices: 13101698--13101746 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
13101688 GGTTAACTAG
13101698 GCATACGGAGTTCATTCCCATCTAA
1 GCATACGGAGTTCATTCCCATCTAA
13101723 GCATACGGAG-TCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCA-TCTAA
13101747 AGACAGACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.22
24 8 0.35
25 10 0.43
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCATCTAA
Found at i:13102245 original size:886 final size:881
Alignment explanation
Indices: 13099834--13102667 Score: 3687
Period size: 893 Copynumber: 3.2 Consensus size: 881
13099824 GTCCATGACA
* ** * *
13099834 CCCGGCTTGCCCATCCTACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGTGAGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGACT
* * *
13099899 TAGGCATACGAAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCG
66 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-
* * *
13099964 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCG
130 GACCGAGAGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * *
13100029 GGGCACCATCGTCGAAGCATCGTCGGAGAACCTAACCGGCAG-CACTGGGGTTCCGGCGATCGGG
195 GGGCACCATCGTCGAAGCATCGCCGGAGAACCTTA-CGGC-GTCATTGGGGTTCCGACGA---GG
* * *
13100093 AGGCAGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATCTTGGCCC
255 -GGC-CG-GGGGGTGTGCGCACA-GATGTGCAAT-GGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
13100158 CCTATCCCTCATCAATCCATGAGAACTCATACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTT
315 CCTATCCCTCATCAATCC-TCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
13100223 GCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGT
379 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGT
13100288 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
443 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * ** * * *
13100353 AAGGTTGGGGCTAAAAAGCCTTCTAAAAAAATTTTAAAAATCTCGAA-CAGCAAAAAGTTTCAAA
508 AAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTAAAAAATCTCAAACCA-CAAAAAGTTTCAAA
13100417 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
571 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
13100482 TTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
636 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
*
13100547 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-TAGTGCCCGCCCG
701 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG
* * * * *
13100611 CCCGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGAACCAAAC
766 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGAC
* * *
13100676 TGAGGGTTACAGCAGTAGGATCGGCAAC-TCGCAGAGGGGGACCGACTGA-C
831 TGAGGGTTACGGTAGTAGGATCGGCAGCAT-GCAGAGGGGGACCGACTGATC
* * * * *
13100726 CCCTGGCTTGCCCATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
1 CCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGAC
* * *
13100791 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCGGATC
65 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-C
* * * * *
13100856 GGACCGAGATTTG-TGACAGCACATGCTAGGCTCGGGCACGTGCTGGTGCCGCATTTTTCTTCGT
129 CGACCGAGAGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
13100920 CGGGGCACCATCGTCGAAGCATCACCGGAGAA-CTTGACTGGTGGCATTGGGGTTTCGACGATCG
193 CGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTT-AC-GGCGTCATTGGGG-TTC--CGA-C-
* * * * * *
13100984 GGGGGGCCGGGGGGGTGTACGCACAAGATGTGTGATTGGTGCTAGTACTTAGCCCTTATATTGGC
251 GAGGGGCC-GGGGGGTGTGCGCAC-AGATGTG-CAATGGTGCTGGTACTTGGCCCTTATATTGGC
*
13101049 CCCTTATCCCTCATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
313 CCCCTATCCCTCATCAATCCTC-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
13101114 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG-ACATTTTTTCAAATGGTCACAAAACCTT
377 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGCAC-TTTTTTCAAATGGTCACAAAATCTT
* * *
13101178 GTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAAAAAAAATACAAGGATCACATCTA
441 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* *
13101243 CCATGTTTGGGGCCAAAACTCCTTCCAAAAATATTTTAAAACATCTCAAACCGA-AAAAAGTTTC
506 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAA-A-TTTAAAAAATCTCAAACC-ACAAAAAGTTTC
* * *
13101307 AAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATTAAAATTCACGTGAAGGCTTAAGGGAC
568 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
13101372 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
633 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
13101437 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGC
698 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT----G-
* *
13101502 TCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGCCTAAGA
758 -C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * ** *
13101567 TCGGATTAGACTGAAGGTTGTGGTAGTAGGATTGGCAGCATGCAGAGGGGGACCCGACTGATC
820 TCGGATCAGACTGAGGGTTACGGTAGTAGGATCGGCAGCATGCAGAGGGGGA-CCGACTGATC
* * * *
13101630 CCCGGCTTACGCAATCCCGCCCCTCTGGCCGG-TGAGCACCCGCACGCTCGTTTCGTTGGGTTAA
1 CCCGGCTTGCGC-ATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCATTTCG-TGGGTTGA
*
13101694 C-TAGGCATACGGAGTTCATTCCCA-TCTAAGCATACGGAG-TCA-TCCCAGTCTAAAGA-CAGA
64 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCAGA
* *** * *
13101754 CCGATCC-AGAGTTGCAGCAGCAAATGCTGGGCTCAAACGTGTGCTGGTG-CGCATTTTTTTTCG
128 CCGA-CCGAGAGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
** * * * * *
13101817 TCAAGGAACCATC-ACTGGACCATCGCCTGAGAACCTTAC-GCGTCATTGGGGTTCCGACGAGGG
192 TCGGGGCACCATCGTC-GAAGCATCGCCGGAGAACCTTACGGCGTCATTGGGGTTCCGACGAGGG
*
13101880 GCCGGGGGGTATGCGCACAGATGTGCAATGGTTGGCTGGTA-TTGGCCCTT-TAATTGGCCCCCT
256 GCCGGGGGGTGTGCGCACAGATGTGCAATGG-T-GCTGGTACTTGGCCCTTAT-ATTGGCCCCCT
* * *
13101943 ATCCCTCATCAAACCTCAGAACTCACACCCCCTTAAAAAGCA-TTGAGA-TTTAGAGGTTTGCTG
318 ATCCCTCATCAATCCTCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
13102006 CCAGTAGCCATTAAAGTGTCTAAAACGAGGGCACTTTTTTCAAATGGTCACAAAATCTTATACAC
383 CCAGTAGCCATTAAAGTGTCTAAAATG-GGGCACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
13102071 TTCGAG-TTTTAGCT-AATTTTTCTTGTGCATGCCAACAAAATTACAAGGATCATGTCTACCAAG
447 TTCGAGTTTTTAGCTGAATTTTT-TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
*
13102134 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCCCAAACCACAAAAAGTTTCAAAAAT
511 TTTGGGGCCAAAACTCCTTCC-AAAAAATTT-AAAAAATCTCAAACCACAAAAAGTTTCAAAAAT
* *
13102199 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCACTGT
574 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
13102264 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
639 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
**
13102329 TACCACCCTATCGATCCATAGCTTGCGCATCCCG--TCTCT--CTGGCGTAGTGCCCGCCCGCCC
704 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCC
* * * *
13102390 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCG
769 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACT-G
* * * * * * *
13102454 AGGGTTCCGGTAGCAAGATCGGCAGCACGCAGAGGGGAAACTGACCGATC
833 AGGGTTACGGTAGTAGGATCGGCAGCATGCAGAGGGG-GACCGACTGATC
* * * * *
13102504 CCCGGCTTGCGCATCCCACCCCTTTAGCCGGCTAAGCGCCCGCATGCTCATTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGACT
* * * * *
13102569 TAGGCATACGGAGTTCATTCCCAGTCTAACCAAACGGAGTTCATTCCCAGTCCAAGATCGGACCG
66 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-
* * * *
13102634 GATCGAGGGTTACGGCAGCACATGCTGGGC-CGGG
130 GACCGAGAGTTGCAGCAGCACATGCTGGGCTCGGG
13102668 GGGTGTGCGC
Statistics
Matches: 1710, Mismatches: 174, Indels: 131
0.85 0.09 0.07
Matches are distributed among these distances:
873 25 0.01
874 155 0.09
875 15 0.01
876 8 0.00
877 15 0.01
878 24 0.01
882 10 0.01
884 5 0.00
885 11 0.01
886 289 0.17
887 49 0.03
888 31 0.02
889 42 0.02
890 19 0.01
891 14 0.01
892 116 0.07
893 548 0.32
894 15 0.01
895 6 0.00
896 12 0.01
897 2 0.00
898 40 0.02
899 37 0.02
900 15 0.01
901 8 0.00
902 109 0.06
903 60 0.04
904 30 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (881 bp):
CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGACT
TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
ACCGAGAGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCGTCGAAGCATCGCCGGAGAACCTTACGGCGTCATTGGGGTTCCGACGAGGGGCCGG
GGGGTGTGCGCACAGATGTGCAATGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAATCCTCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTAAAATGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCAAAAAATTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACTGAGGGTTACGGTAG
TAGGATCGGCAGCATGCAGAGGGGGACCGACTGATC
Found at i:13104118 original size:26 final size:26
Alignment explanation
Indices: 13104082--13104134 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13104072 GTTGACTTAG
*
13104082 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13104108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13104134 G
1 G
13104135 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13105497 original size:895 final size:895
Alignment explanation
Indices: 13103211--13106658 Score: 4387
Period size: 897 Copynumber: 3.8 Consensus size: 895
13103201 GTTGGCTTAG
* * * * ** *
13103211 GCATATGGAGTTCATTCCCAGTGTAAGATCGGAGCAAACCAAAGGTTGCGGTAGCACATACTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCACATGCTGGG
* * * * *
13103276 CTCGAGCATGTGCTGGGGCCACATTTTTCTTCGCCGGGGCACCATTGCCAGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
** * *
13103341 ACCTGACCGGCGGCATTGGGGTTCCGGTGAT-GGGGGGGTC-GGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* * *
13103404 CGACGGGTGCTGGTACTTGACCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13103469 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
13103534 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
13103599 TGCATGCCAACAAAAATACAAGG-TCTCATCTACCAAGTTTGAGGCCAAAACT-CTTTTCAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAA
* * * *
13103662 AATTTTAACAAATCCCGAACAGCAAAAATTTTCAAAAATCATGAAAAAGAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
13103727 TGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
13103792 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13103857 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCCCGTTCGTTTCGTCGGTTGGCTTA
650 GCATCCCGTCTCTCTGGCCGGCGTAGTG----CTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
13103922 GGCATACGAAGTTCATTCCCAG-CGTAAGATTAGACCGAACTGATGGTTGTGGTAGTAGGATCAG
711 GGCATATGGAGTTCATTCCCAGTC-TAAGATCAGACAGAACAGAGGGTTGTGGTAGTAGGATCAG
* * * * * * * *
13103986 -TAGCACGTAGATGGGGACCCGGTGGATGCTCGGCTTACGCAACCTGCCCCTCTAGCCGGTTGAG
775 CCA-CACGTAGA-GGGGACCCGATCGATACTCGGCTTACGCATCCTGCCCTTCTGGCCGATTGAG
*
13104050 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CTCAGTCTAA
838 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTCTAA
* ** ** * ** * *
13104108 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGGGGGTTTCGGTAGCAAATGCTTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCACATGCTGGG
* * * * * *
13104173 CTGGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGCCGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
* * * * *
13104238 ACCTGACTGGCGGCATTCGGGTTCCAACGATCGGTGGGGCCGAGGGGGGTGTGCGGACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTGTGCGCACATGATGT
* * * * *
13104303 GCAATGGGTGCTGGTACCTGGCCATTATATTGGCCCCCTGTCCCTCATCAAACCTCGGGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
13104368 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13104433 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAATTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
13104498 GTGCACGCCAACATAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAA
* *
13104563 AATTTTTAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* **
13104628 TGCCATGAAACTTCACGTGCAA-GCTTAATGGACCATTGTATGAATTTACAAGGTATAAAAATGG
520 TGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13104692 CATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * **
13104757 CGCATCCCGTCTCTCTGGTTGGCATAATGCTCGCCCGTTCGCTCGTTTCGTCGGTTGGCTTAGGC
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** *
13104822 ATATGGAGTTCATTCCCAGTCTAAGATCAAACTAG-ACAGAGGGTTGCAGTAGTAGGATCGGCCA
714 ATATGGAGTTCATTCCCAGTCTAAGATCAGAC-AGAACAGAGGGTTGTGGTAGTAGGATCAGCCA
13104886 CACGTAGAGGGGGACCCGATCGATACTCGGCTTACGCATCCTGCCCTTCTGGCCGATTGAGCGCC
778 CACGTAGA-GGGGACCCGATCGATACTCGGCTTACGCATCCTGCCCTTCTGGCCGATTGAGCGCC
* *
13104951 CGTACGCTCATTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCTAGTCTAA
842 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
** * * *
13105005 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTAGATCGAGGGTTGCAACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCACATGCTGGG
** * * *
13105070 CTCGGGCATGTGCTGGTGCCGTAGTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
* * * *
13105135 ACCTTACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGTTGTGCACACATGATATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
*
13105199 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
13105264 TCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
13105329 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
13105394 TGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCAAAAACTCTTTCTGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA
* * *
13105459 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * ***
13105524 GCCATGAAACTTCAGGTGAAGGCTTAAAGGATGGTTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
13105589 TTGGCACGTAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
13105654 CATCCCGTCTC-CTGGCCAGCGTGAGTCCT-GCCCGCCCCGCGTC-ATTCGTTAGTTGGCATTAG
651 CATCCCGTCTCTCTGGCCGGCGT-AGTGCTCGCCCG-CCCGC-TCGTTTCGTCGGTTGGC-TTAG
* * * * * *
13105716 GCATATGGAGGTCATTCCCCAGTCTAAGATCAGACAGCACCGAGGGTTGTGGCAGCAGGATCAAC
712 GCATATGGAGTTCATT-CCCAGTCTAAGATCAGACAGAACAGAGGGTTGTGGTAGTAGGATCAGC
* * * * * * * *
13105781 AGCTCAC--AGAGAGGA-CCGACCTAAAACCCCCGGCTTTGCCCATCC-GCCCTTCTGGCCGACT
776 --CACACGTAGAGGGGACCCGATC-GATA--CTCGGC-TTACGCATCCTGCCCTTCTGGCCGA-T
* * *
13105842 GTGAGCGCCCGTGACGTTCGTTTCGTGGGTTGACTTAGGCAATACGGAGTTCATACCCAGTCTAA
834 -TGAGCGCCCGT-ACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCTAGTCT-A
13105907 A
895 A
** * * *
13105908 GCATA-CAAGTTTATTCCCAGTGCTAAGATCAGACCGGAACCGGAAGG-TGCCGGACAGCAGCAT
1 GCATATGGAGTTCATTCCCAGT-CTAAGATCGGACCAG-ACC-GAAGGTTG-C-GACAGCA-CAT
* *
13105971 GCT-GGTTCGGGCAATGTGCTGGTGGTCACATTTTTCTTCATCTTCGGGGCCACCATC-CCTAAG
60 GCTGGGCTCGGGC-ATGTGCTGGT-GCCACATTTTTCTTCA-C--CGGGG-CACCATCGCC--AG
* * * * * * * *
13106034 AACCTC-ACTAGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGAGGGGCCAGGGGGGTT
117 AGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGG-T
*
13106098 GTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCCTC
180 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA----TCCCTC
* *
13106163 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTA
241 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
13106228 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAG
306 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
13106293 TTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGG
371 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG
* ** * *
13106357 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATTTCGAGCC-CTAAAAAGTTTCAAAAATCGTGAA
436 CCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAA
* * *
13106421 AAATAGAAAACGAGTCATCTTGCAATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
500 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * * *
13106486 TTACAAGCTACAAATATGGCATTGGCATGCAGAAATATCAAGATGTGCCTAAACCAACCTACCAC
565 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * *
13106551 TCTATCGATCCACGGGTTGCACATCCCGTCTTTCTGGCCGGCGTA--G-T-ACCCGCCCGCTCAT
630 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGT
* * ** * *
13106612 TTTGTCGGCTGGCTTACCCATACGGAGTTCATTCCTAGTCTAAGATC
695 TTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
13106659 GGATTGGACC
Statistics
Matches: 2224, Mismatches: 275, Indels: 89
0.86 0.11 0.03
Matches are distributed among these distances:
894 14 0.01
895 468 0.21
896 29 0.01
897 507 0.23
898 31 0.01
899 13 0.01
900 235 0.11
901 258 0.12
902 36 0.02
903 18 0.01
904 4 0.00
905 5 0.00
906 14 0.01
907 16 0.01
908 12 0.01
909 1 0.00
911 6 0.00
912 21 0.01
913 63 0.03
914 19 0.01
915 58 0.03
918 201 0.09
919 195 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ATGGAGTTCATTCCCAGTCTAAGATCAGACAGAACAGAGGGTTGTGGTAGTAGGATCAGCCACAC
GTAGAGGGGACCCGATCGATACTCGGCTTACGCATCCTGCCCTTCTGGCCGATTGAGCGCCCGTA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:13110175 original size:26 final size:26
Alignment explanation
Indices: 13110145--13110197 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13110135 GTTGACTTAG
* *
13110145 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
13110171 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
13110197 G
1 G
13110198 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:13111075 original size:26 final size:26
Alignment explanation
Indices: 13111035--13111086 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13111025 TGACTTAGGC
*
13111035 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
*
13111061 ATACGGAGTTTATTCCCAATCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
13111087 TCAGACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGA
Found at i:13111795 original size:874 final size:869
Alignment explanation
Indices: 13108385--13114018 Score: 5402
Period size: 861 Copynumber: 6.4 Consensus size: 869
13108375 TGGGTTGACT
* **
13108385 TAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCT-GACCGACGGTTGCAACAGCACATG
1 TAAG-ATAC-GAGTT-ATTCCCA-TCTAAGATCAG-A-CTGGACCGAGGGTTGCGGCAGCACATG
* * * **
13108448 ATGGGCTCGGGCAATGT--TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGC
60 CTGGGCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-ATCAA
* ** * * * **
13108511 CGGAGAACCTGAATGGCGGTATTGGGGTTCCTG-CG-TCCGGGAGGCCGTGGGGTGTGCGCATGT
123 C-GAGAACCTG-ACGGCGACATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
* *
13108574 GATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGA
185 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
13108639 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
250 ACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGG-TT-CT----GTAG-C----------C
13108704 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
298 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * ** ** *
13108769 TTTTTGTGCATGCAAAAAAAAAATACAAGGATCACCTCTACCAGGTTTAAGGAAAAAACTCCTTT
363 TTTTTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
13108834 CAAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCCAAAATCATTAAAAATAGAAAACGAG
427 CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * * ** *
13108899 TCATCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTGCAAGAAATGAA
492 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
13108964 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACG
557 AATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
13109029 GCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCACGTTTCATCGGTT
622 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCTCGTTTCATCGGTT
* * *
13109094 GGCTTAGGCATAC-GAAGTTGATTCCCATTCTAAGATCAGATCGGACCGAGGG-T----T-GCA-
683 GGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAG
* * *
13109151 G--C---AGCACACAGAGGGGGATCC-AGCCGATCTCCGACATGCGCATCCCGCCCCTATGGCCG
747 GATCGATAGCACACAGAGGGGGACCCGA-CCGATC-CCGACTTGCGCATCCCGCCCCTCTGGCCG
* * * *
13109210 GCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTC
810 GCTGAGC-CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * **
13109271 TAAGCATGCGAAGTTCATTCCCAGTCTAATATCAGACCGGATCGAGGGTCACGGCAGCACATGCT
1 TAAG-ATACG-AGTT-ATTCCCA-TCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCT
* * ** **
13109336 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAAAGCATCGTCGG
62 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-ATCAAC-G
* * ** * *
13109401 AGAACATGACCGACGATGTTGGGGTTCCGGCGATC-----GG--GGGGGGTGTGCGCATATGATG
125 AGAACCTGA-CGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
13109459 TACGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCACGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13109524 ACACCCCCTTAAAGAGCATTTGAGACTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGAATTTACAGG-TT-CT----GTAG-C----------CTGAA
*
13109589 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTT
302 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * ** * *
13109654 TATGGATGCCAACAAAAACACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGACGTTCTGAAA
367 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
13109719 AAATTTTAAAAAATC-CTAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGACTCGT
432 AAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
13109783 CTCGCCATGAAACTTCACTTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATGAAAATG
496 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13109848 GCATTGGCATGCAGAAATATGAAAGATGTGCCTAAACCAACCTACCACCCTATCAATCCACGGCT
561 GCATTGGCATACAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
13109913 TGCGCATCCCGTCTCTCTGGACGACGTAGTGCCCGCCTGCCCGCCCGCTTGCTCCTTTCATTGGT
625 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCG-CC-C--GCTCGTTTCATCGGT
* * * * *
13109978 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAG
682 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAG
* * *** * * *
13110043 GATCGATAGCACGCAGAGGTGGACCCTTTCGATCCTTGACTTGTGCATCCCACCCCTCTGGCCGG
747 GATCGATAGCACACAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGG
* * *
13110108 CTGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
811 CTGAGCCT-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
13110168 TAAGCATACGGAGTTCATTCCCAGTATAAGATC-GAACTGGACCGAGGGTTGCAGCAGCACATGC
1 TAAG-ATAC-GAGTT-ATTCCCA-TCTAAGATCAG-ACTGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
13110232 TGGGCTTGGGCATGTGCTGTTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGAATCACCG
61 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-ATCAAC-
13110297 GAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
124 GAGAACCTGA-CGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * *
13110362 GTGTGAT-GGTGCTGGTACTTGGCCCTTATATGGGCCTCATATCCCTCATCAAACCTCGAGAACT
188 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
13110426 CATACCCCCTTAAAGAGCATTTGA-AATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
253 CACACCCCCTTAAAGAGCATTTGAGAA-TTTACAGG-TT-CT----GTAG-C----------CTG
* *
13110490 AAATGGGGACACTTTTTTCGAATGGTCACAACATCTTGTACACTTCGAG--TTT---TGAATTTT
300 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
13110550 TTTGTGCATGCCAACAGAAATACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
365 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
13110615 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACAAGTCG
430 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
13110679 TCTTGCCAGGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAAT
495 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** **
13110744 GGCATTGGCATGCAGAAATATGAAGATAAGCCTAAACCCACCTACCACCCTATCGATCCACGATT
560 GGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * **
13110809 TGCGCATCCCGTCTCTCTGGCCGCCGTAGTGCTCGCCCGTCCGCTCGTTTTGTCGGTTGGCTTAG
625 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * ** * *
13110874 GCATTCAGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCGGTAGTAGGATCGAAA
690 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * * *
13110939 GCACACAAAGGGGGACCCGACCGATCCCAGACTTGCACATCCCGCCCCTCTAGCCAGCTGAGCAC
755 GCACACAGAGGGGGACCCGACCGATCCC-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-C
* * *
13111004 TCGCACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
818 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
13111056 TAAGAATACGGAGTTTATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATTCT
1 TAAG-ATAC-GAG-TTATTCCC-ATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCT
* * *
13111121 GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCAACAA
62 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-ATCAAC-G
* * * *
13111186 AGAACCTGACTGGCGACATTGGGGTTCTGGCAATCGGGGGGGACCGGGGGGGTGTGTGCACATGA
125 AGAACCTGAC-GGCGACATTGGGGTTCCGACGATCGGGGGGG-CC-GGGGGGTGTGCGCACATGA
* * * *
13111251 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCGTCATCAAACCTCAAGAAC
187 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
13111316 TCACACCCCCTTAAAGAGCATTTGA-AATTTACAGG-T-T-T-GCCT-AAATGGGGACACTTTTT
252 TCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTCTGTAGCCTGAAATGGGGACACTTTTT
* * *
13111375 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTGTGCATGCCAAAAA
317 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* ** *
13111440 AAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCACCCGAAAAAATTTAAAAAAATC
382 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
13111505 TCGAACCCCAAAAAGGTTCGAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTC
447 TCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
13111570 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
512 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAA
* * * * *
13111635 ATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCCTACGCATCTCGTCTCTC
577 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
13111700 TGCCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCATAGGCATACAGAGTTCATTC
642 TGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTC
* * ** ** ** *
13111765 CTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTTGGATCGATAGCACGTAGAATGGGACT
707 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACACAGAGGGGGACC
* * * * * * * * * *
13111830 CGATCGATCCCCGGCTTGCGCACCCCGTCTCTCTGGTCGGC-GTAGCGTCCGCCCGCTCATTTCA
772 CGACCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG-AGCCT-CGCACGCTCGTTTCG
** * *
13111894 TCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
834 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
13111930 -----TA--AG--A----C--C--AGA-C---C-GGACCGAGGCTTGCGGCAGCATATGCTGGGC
1 TAAGATACGAGTTATTCCCATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * * *
13111973 TCGGGCATGTGCAGGTCCCGTATTTTTCTTTG-C-TGG-AGCATCGTCGGA-A--AATC-TG-AC
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGATCAA-CGAGAAC
*
13112030 C-GACGGC-AC--TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAAT
130 CTGACGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
13112091 GGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
13112156 CTTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGAATTTACAGGT-T-CT----GTAG-C----------CTGAAATGGGG
* * *
13112221 ACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAA-TTTGTTGTCCA
308 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
13112285 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
373 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
13112350 TAAAAAATGTCGAACCACAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
438 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
13112415 TGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAAATTACAAGCCATAAAAATGGCTTTGG
503 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
13112480 CAGATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGTGCATC
568 CATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ** * *
13112545 CTGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
633 CCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * ** **
13112610 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTG-TATCAGCAGGATCGGCAGCA
694 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGT-AGCAGGATCGATAGCA
* * * * ** *
13112674 CATAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGATCGGTTGAGTGCC-C
758 CACAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA--GCCTC
* *
13112738 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGCC
820 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
***
13112788 TAAGAT-C--G--------------GATCAGACT-----GAGGGTTGCGGCAATGCATGCTGGGC
1 TAAGATACGAGTTATTCCCATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * **
13112831 TCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG---AACCTG-ACC
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGATCAACGAGAACC
* * *
13112892 -GAC-G-G-CTTTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGAAG
131 TGACGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * * * *
13112953 GGTGCTGGTATTTGGCCCTTATATTGGCACACTAT-CCTGCATGAAACCTTGAGAACTCACA-CC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACTCACACCC
** *
13113016 CCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGTAATGGCG
260 CCTTAAAGAGCATTTGAGAATTTACAGG-TT-CT----GTAGCC-TGAAA-----TG----GG-G
*
13113081 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTA
308 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
13113146 TGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGCGGCCAAAACTCCTTCCGAAAAAATTT
373 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* ** *
13113211 TAAAAAATCTCCAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCA
438 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* **
13113276 TGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGG
503 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
13113341 CATGCAGAACTATGAAGATATCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATT
568 CATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
13113406 CCGTCTCTCTGGCC-AGCGTAGTGCCGCACGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAG
633 CCGTCTCTCTGGCCGA-CGTAGT-------GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * **
13113470 GCATACAGAGTTCATTCCTAGTCTAAGAT-AGGAGCGGATCGAGGGTTGCGGCAGCAGGATCGGC
690 GCATACAGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGTAGCAGGATCGAT
** ** * * * *
13113534 AGCATGCAGAGGGGGA-CCG-GTGAATCCCCTAACTTGCGCATCCCGTCCCTCTGGCCGACTTAG
754 AGCACACAGAGGGGGACCCGACCG-AT-CCC-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * ** * * *
13113597 CGCCCGC-TGCTCGTGTTCGTGTTTTTGACATAGGCATACGAAGTTCATTCCGAGTC
816 C-CTCGCACGCTCGT-TTCGTG-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
13113653 TAAGAT-C-AG--A----C--C---GAACCGA--GG--C-A---TTGTGGCAGCACATGCTAGGC
1 TAAGATACGAGTTATTCCCATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
13113697 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G-T---CGAGAACC
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGATCAACGAGAACC
* * * * * * *
13113752 TGCCGACGGCATTGGGGTTAC-AGCGATC-GGGGGG-CTGGGGGTGTGCGCACATCATGTGCAAT
131 TGACGGCGACATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
13113814 GGGTGCTGATATTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
13113879 CCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGG
260 CCTTAAAGAGCATTTGAGAATTTACAGG-TT-CT----GTAG-C----------CTGAAATGGGG
*
13113944 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTGTTTTGTGCA
308 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
13114008 TGCCAA-AAAAA
373 TGCCAACAAAAA
13114019 NNNNNNNNNN
Statistics
Matches: 4067, Mismatches: 508, Indels: 371
0.82 0.10 0.08
Matches are distributed among these distances:
832 100 0.02
833 11 0.00
834 20 0.00
835 1 0.00
836 2 0.00
837 4 0.00
838 3 0.00
839 3 0.00
840 1 0.00
841 2 0.00
842 2 0.00
843 2 0.00
844 1 0.00
845 10 0.00
846 2 0.00
847 1 0.00
848 54 0.01
849 2 0.00
850 4 0.00
852 1 0.00
853 3 0.00
854 267 0.07
855 61 0.01
856 1 0.00
857 5 0.00
858 215 0.05
859 9 0.00
860 106 0.03
861 391 0.10
862 109 0.03
863 111 0.03
864 146 0.04
865 38 0.01
866 61 0.01
868 51 0.01
869 8 0.00
870 3 0.00
873 105 0.03
874 341 0.08
875 3 0.00
879 2 0.00
880 171 0.04
881 286 0.07
882 2 0.00
883 4 0.00
884 2 0.00
885 66 0.02
886 64 0.02
887 70 0.02
888 319 0.08
889 7 0.00
890 36 0.01
891 80 0.02
892 6 0.00
893 1 0.00
894 2 0.00
896 68 0.02
897 340 0.08
898 93 0.02
899 1 0.00
901 3 0.00
902 3 0.00
903 157 0.04
904 24 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (869 bp):
TAAGATACGAGTTATTCCCATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGATCAACGAGAACC
TGACGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGAATTTACAGGTTCTGTAGCCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGC
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
TAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
GATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACACAGAGGGGGACCCGACCGATC
CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCTCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTC
Found at i:13115890 original size:25 final size:26
Alignment explanation
Indices: 13115839--13115890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13115829 GTTGACTTAG
13115839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13115865 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13115890 G
1 G
13115891 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13117646 original size:903 final size:898
Alignment explanation
Indices: 13115027--13120961 Score: 7468
Period size: 880 Copynumber: 6.7 Consensus size: 898
13115017 NNAGCATTGT
*
13115027 GGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C
1 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * *
13115085 ----CATCGTCGGAGAACCTG-CCGACGGCATTGGGGTTACAGCGATCGGGGGGG-CTGGGGGGT
66 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT
* * * * *
13115144 GTGCGCACATCATGTGCAATGGGTGCTGATATTTGGCCCTTATATTGGCCCCTTATCCCTCATCA
131 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
13115209 AACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
196 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
13115274 TTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
261 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
13115339 TAGCTGAATTGTTTTGTGCATGCCAACAAAAATATAGGGATCATGTCTACCAAGTTTGGGGCCAA
326 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
13115404 AACTCTTTTCAAAAAAATTTTAAAAAACCTTC-AATCGTAAAAAGTTTCAAAAATAGTGAAAAAT
391 AACTCTTTCCGAAAAAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
13115468 AGGAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
455 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
13115533 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
520 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
13115598 TCGATCCACGACGTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCTCCCGCT
585 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGCT
* * *
13115660 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA-TCAGACCAGACTGAGG
650 CGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTGA-ACCAGAC-AAGG
* * * * * **
13115724 TTTGCGATAGCAGGATCGACAGTAAGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCACATCCCG
712 GTTGCGGTAGCAGGATCG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCG
* * * *
13115789 CCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
776 CCCCTCTGGCCGACTGAGC-GCCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTAC-GAGTTCAT
** *
13115854 TCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCGGATCGAGGGTTGC
839 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
** * * *
13115913 GATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCTGGGCACCATCACC
1 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * ** * * * *
13115978 AGAGCATTGCCGGAGAACCTGTTCGACGGCGTCGGGGTTTCGGTGAT-TGGGGGGCCAGGGGGGG
66 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGGGG
*
13116042 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATC
130 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
13116107 AAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
195 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
13116172 ATTACAGTGTCTGAAACGGGGACACTTTTTTTGAAATGGTCTCAAAATCTTGTACACTTCGAGTT
260 ATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
13116237 TTTAGCTGAATTTTTTTTATGCATGCCAACAAAAATTCAAGAATCATGTCTACCAAGTTTGGGGC
324 TTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
13116302 CAAAACTCCTTCCGAAAACATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAA
388 CAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
13116367 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-AATTT
453 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TT
* *
13116431 TACAAGCCATAAAAATGGCATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
517 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
13116496 TTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCTCCC-CCCGCCCGCC
582 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTCC
* * *
13116560 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCGCAGTCTAAGA-TCAGACCGGACA
646 CGCTCGTTTCGTCGGTTGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATTGA-ACCAGACA
* * * * * ** *
13116624 GAGGGTTACGGCAGTAGGATCGGTAGCACGCAGAGGGGGACTCGACTTATCCCCCGCTTGCACAT
709 -AGGGTTGCGGTAGCAGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACAT
* *
13116689 CCCGCCCCTCTGGCC-AGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCTTACAGAG
772 CCCGCCCCTCTGGCCGA-CTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTAC-GAG
* * * * *
13116753 TTCATTCCCAGCCTAAGCATATGGAGTTGATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTAC
834 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * *
13116818 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGCGGCACCATCGTC
1 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * * *
13116883 GGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGATTTCGGTGATTGGGGGGGCCGGGGGGGT
66 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT
* *
13116948 ATGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
131 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
13117013 AACCTTGAGAGCTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
196 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
13117078 TTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTAGAGTTTT
261 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
13117143 TAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
326 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
13117208 AACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
391 AACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* *
13117273 GAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACA
456 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
13117338 AGCCATCAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTAT
521 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
13117403 TGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCTGCCCGCT
586 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCT-CCCGCT
* * * *
13117468 CGTTTCATCAGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATTGAACCGGATCAAGGG
650 CGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTGAACCAGA-CAAGGG
* * * * * *
13117533 TTGTGGTAGCAGGATCAGCAGCACACAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCAC
713 TTGCGGTAGCAGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGC
* *
13117598 CCCACTGGCCGACTGAGCGCCGCACGCTCGTTTC-----ATGA--T----TT--GA---C-TT--
777 CCCTCTGGCCGACTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGAGTTCATTCC
* *
13117644 -AG-----GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
842 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * **
13117695 GGCAGCACATGCTGTGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCC
1 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * * * * *
13117760 GGAGCATGGTCGAAGAACTTGACC-AGCGGCATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGA
66 GGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTTCGGCGATCGGGGGGGC-CGGGGG-
* * * *
13117824 GGATGTGGGCACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCGCCTATCCCTC
128 GG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
13117889 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCTAGTA
192 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
13117954 GCCATTAAAGAGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAG
257 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
13118019 TTATTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGA
322 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * * * *
13118084 CCAAAACTCCTTT-TGAAAAAATTTTAACAAATATTGAACTGCAAAAAGTTTAAAAAATCATGAA
387 CCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAA
*
13118148 AAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
451 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** *
13118213 TTACAAGCCATAAAAATGGCATTGGCACAAAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
516 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
13118278 CCTATCGATCCACAGCTTGCGCATCCCGTCTC-CTTGGCCGGCGTAGTGCCCGCCCGTCCGCCT-
581 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGGCCGGCGTAGTGCCCGCCCGCCCGCCTC
* * * * *
13118341 --GCTCGTTTCGTCAGTTGGCTTAGGCATACATAGTTCATTCCTAGTCTAAGATTGGACTAGACC
645 CCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTGAACCAGA-C
** * * * * * *
13118404 AAGGGTTGTAGTAGCAGGATCGGTAGCACGTAGAGGGGGACTCAACCGATCCCTGGCTTGCGCAT
708 AAGGGTTGCGGTAGCAGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACAT
* * * *
13118469 CCCGCCCCTCTGG-CTAGCTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAG
772 CCCGCCCCTCTGGCCGA-CTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTAC-GAG
* * **
13118533 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCAGATAGGACCGAGGGTTGC
834 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * *
13118598 GGCAGCACATGCTAGGCTCGGGCATGTACTGGTGTCGCATTTTTCTTCGTCGAGGCAGCATCGCC
1 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * *** * *
13118663 GGAGCATCGCCGAAGAACCTGACCGACGGCATTAGGGTTTCAATGATCAGGTGGGCCGGGGGGGT
66 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT
13118728 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
131 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
13118793 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCA
196 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
13118858 TTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTT
261 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTT
* *
13118922 TTAGCTGAATTTTTTTTTGCCTGCCAA-AAAAATAACAAGGATCACGTCTACCAAGTTTGGGGCC
325 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * ** *
13118986 AAAACTCCTTCCCAAAAAATTTTAAAAAAT-TTGAACCGTAAAAATTTTTGAAAATCATGAAAAA
389 AAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
13119050 TAG-AAACTAAGTCGTCTTGCCATGAAACTTTATGTGAAGGCTTAAGGGACCATGGTATGAATTT
454 TAGAAAAC-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
13119114 ACAAGCCATAAATATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
518 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
13119179 TATTGATCCACGACTTGCGCATCCCATCTCTCTGGTCGGCGTAGT----GCCCACCCG-CT--C-
583 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCG
* * * ** * **
13119236 AT--TTT-GCCGGTTGGCTTAGTCATACGGAGTTCATTCCCCA-TCTAAGATCAAATCAGATTGA
648 CTCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATT-CCCAGTCTAAGATTGAACCAGA-CAA
* * * *
13119297 GGGTTACGATAGCAGGATCGACAGCATGCAAAGGGGGACCCGACCGATCCCCGGCTTGCACATCC
710 GGGTTGCGGTAGCAGGATCG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCC
* * *
13119362 CGCCCCT-T-------TG-GC-CGGCACACTCATTT--T--G-TG-----GG-TT--GA---C-T
774 CGCCCCTCTGGCCGACTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGAGTTCAT
* * *
13119400 T---AG-----GCATACGAAGTTCATTCCCTA-TCTAAGATCGGACCGGACTGAGGGTTGC
839 TCCCAGTCTAAGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * *
13119452 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTATTCGTCGGGGCACTATCGTC
1 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * *
13119517 GGAGCATCGTCAGAGAACCAGACCGACGGCATTGGGG-TTCTGGCCAT---------CGGGGGGG
66 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGG
* * * * * **
13119572 TGTGCGCACATGATGTGTGATGCGTGCTAGTACTTGGCCCTTATTTTTGCCCCCTATCTATCATC
130 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
13119637 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCC
195 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
13119702 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTT
260 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
13119767 TTAGCTGAATTTTTTTGTGCATGCCAACAACAACAAAAGGATCACGTCTACCATGTTTGGGGCCA
325 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
13119832 AAACT-TCTACCGAAAAAATTTTAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAA
390 AAACTCT-TTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* *
13119896 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTA
454 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
13119961 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
519 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
13120026 ATCAATTCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCGTGGTGCCCACCAGCCCG-CT-----
584 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGC
* * * *
13120085 TAC--TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAG
649 T-CGTTTCGTCGGTTGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATTGAACCAGA-CAAG
* * * * *
13120148 GGTTGCAGTAGCAGGATCAGCACCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCC
711 GGTTGCGGTAGCAGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCC
* *
13120213 GCCCCTCTGGCCGACTGAGCGCTCGCACGCTTGTTTCGTGGGTTGACTTAGG-TATACGAAATTC
775 GCCCCTCTGGCCGACTGAGCGC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCT-TACG-AGTTC
* * * * *
13120277 ATTCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAATGGTTGT
837 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * ** * ** *
13120339 GGCAGCATATCCTACGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACC
1 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* *
13120404 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGG
66 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGG-GGGGG
* *
13120469 TGTGCCCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATC
130 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
13120534 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCC
195 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
13120599 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTT
260 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
13120664 TTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAGGGATCGCATCTACCACGTTTAGGGCCA
325 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
13120729 AAAATCCTTCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTTC-AAAATCGTAAAAAA
390 AAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAA
*
13120793 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTA
454 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
13120858 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCT
519 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
13120923 ATCGATCCACGGCTTGCGCATCCCG-CCCATCTGGCCGGC
584 ATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGCCGGC
13120962 TGAGCGCCCG
Statistics
Matches: 4374, Mismatches: 527, Indels: 285
0.84 0.10 0.05
Matches are distributed among these distances:
844 3 0.00
845 266 0.06
846 181 0.04
847 4 0.00
848 1 0.00
849 7 0.00
850 110 0.03
851 2 0.00
853 3 0.00
854 129 0.03
855 1 0.00
858 2 0.00
859 4 0.00
860 1 0.00
861 9 0.00
862 2 0.00
863 2 0.00
865 1 0.00
866 4 0.00
869 1 0.00
870 2 0.00
871 3 0.00
872 1 0.00
874 1 0.00
875 5 0.00
876 129 0.03
877 158 0.04
878 7 0.00
879 5 0.00
880 474 0.11
881 4 0.00
882 9 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 52 0.01
887 132 0.03
888 3 0.00
889 4 0.00
890 2 0.00
891 98 0.02
892 8 0.00
893 1 0.00
894 4 0.00
895 9 0.00
896 6 0.00
897 468 0.11
898 31 0.01
899 343 0.08
900 305 0.07
901 271 0.06
902 6 0.00
903 436 0.10
904 371 0.08
905 280 0.06
906 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATTGAACCAGACAAGGGTTG
CGGTAGCAGGATCGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCT
CTGGCCGACTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
Found at i:13118559 original size:26 final size:26
Alignment explanation
Indices: 13118523--13118574 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13118513 GTTGACTTAG
13118523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13118549 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13118575 AATCAGATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13121626 original size:721 final size:725
Alignment explanation
Indices: 13120191--13121668 Score: 2090
Period size: 721 Copynumber: 2.0 Consensus size: 725
13120181 GGGACCCGAC
* * * *
13120191 CGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCACGCTTGTTTCGTGGGT
1 CGATCCACGGCTTGCGCATCCCGCCCATCTGGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGT
* * * * *
13120256 TGACTTAGGTATACGAAATTCATTCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTACATTACCAATCTAAGATCA
* * * ***
13120321 GACCAGACCAATGGTTGTGGCAGCATATCCTACGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
131 GACCAGACCAAGGGTTGCGGCAGCACATCCTACGCAAAGGCATGTGCTGGTGCCACATTTTTCTT
* * * *
13120386 CACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
196 CACCGGGG---C--CACC---GCATCGTCGAAGAACATGACCGACGACATTAGGGTTCCGACGAT
* * *
13120451 CGGGGGGGCCGGAGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATT
253 CGGAGGGGCCGGAGGGGGTGTGCCCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATT
13120516 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
318 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
** *
13120581 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
383 GGTTTGCTGCCAATAGCCATTAAAGTGAATGAAATGGGGACACTTTTTTCAAATGGCCACAAAAT
** * * * *
13120646 CTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAGGGATCGCAT
448 CTTGTACACTTCGAGCTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACAT
*
13120711 CTACCACGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTT
513 CTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTTGAACCG-AAAAAGTT
* *
13120776 TTCAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
577 TCCAAAATCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
13120841 ACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
642 ACAACTGTATGAATTTACAAGCCATAAAAATGGCATTCGCACGCAGAAATAAGAAGATGTGCCTA
*
13120906 AACTCACCTACCACCCTAT
707 AACCCACCTACCACCCTAT
* *
13120925 CGATCCACGGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCGCCCGCACGTTTGTTTCATGGGT
1 CGATCCACGGCTTGCGCATCCCGCCCATCTGGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGT
*** * *
13120990 TGACTTAGGCATACGGTGTTCATTCCCTA-TCTAAGCATATGGAGTACATTACCAATCTAAGATT
66 TGACTTAGGCATACGAAATTCATTCCC-AGTCTAAGCATACGGAGTACATTACCAATCTAAGATC
* * * * * ** * *
13121054 GGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCAAAGGCATGTGCTGGTGTCGCATTTTTCT
130 AGACCAGACCAAGGGTTGCGGCAGCACATCCTACGCAAAGGCATGTGCTGGTGCCACATTTTTCT
** * * *
13121119 TCGTCGGGG-CA-C-CATCGTCGAAGAACATGACCGGCGACATTAGGGTTTCGGCGATCGGAGGG
195 TCACCGGGGCCACCGCATCGTCGAAGAACATGACCGACGACATTAGGGTTCCGACGATCGGAGGG
*
13121181 GCC-G-GGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
260 GCCGGAGGGGGTGTGCCCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
13121244 TTTCCCTCATCAAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
325 TATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
13121309 CTGCTAGTAGCCATTAAAGTGAATGAAATGGGGACA-TTTTTCTCAAATGGCCACAAAATCTTGT
389 CTGCCAATAGCCATTAAAGTGAATGAAATGGGGACACTTTTT-TCAAATGGCCACAAAATCTTGT
**
13121373 ACACTTCGAGCTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC
453 ACACTTCGAGCTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
* * *
13121438 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACTC-AAAAAGTTTCCAA
518 AAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTTGAAC-CGAAAAAGTTTCCAA
* * * *
13121502 AATCGTGAAAAATAAAAAACGAGTCGTCTTTCCGTGAAACTTCACGTGAAGGCTTAAGGGACAAT
582 AATCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAAC
*
13121567 TGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATAAGAAGATGTGCCTAAACCC
647 TGTATGAATTTACAAGCCATAAAAATGGCATTCGCACGCAGAAATAAGAAGATGTGCCTAAACCC
13121632 ACCTACCACCCTAT
712 ACCTACCACCCTAT
* *
13121646 CTATCCACGGCTTGCACATCCCG
1 CGATCCACGGCTTGCGCATCCCG
13121669 TTTCTCTGGC
Statistics
Matches: 663, Mismatches: 77, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
721 237 0.36
722 208 0.31
723 46 0.07
727 1 0.00
728 2 0.00
734 168 0.25
735 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (725 bp):
CGATCCACGGCTTGCGCATCCCGCCCATCTGGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGT
TGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTACATTACCAATCTAAGATCA
GACCAGACCAAGGGTTGCGGCAGCACATCCTACGCAAAGGCATGTGCTGGTGCCACATTTTTCTT
CACCGGGGCCACCGCATCGTCGAAGAACATGACCGACGACATTAGGGTTCCGACGATCGGAGGGG
CCGGAGGGGGTGTGCCCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAATAGCCATTAAAGTGAATGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACA
CTTCGAGCTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
TTTAGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTTGAACCGAAAAAGTTTCCAAAATC
GTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAACTGTA
TGAATTTACAAGCCATAAAAATGGCATTCGCACGCAGAAATAAGAAGATGTGCCTAAACCCACCT
ACCACCCTAT
Found at i:13121926 original size:26 final size:26
Alignment explanation
Indices: 13121890--13121942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13121880 GTTGACTTAG
* *
13121890 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13121916 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13121942 G
1 G
13121943 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13124277 original size:26 final size:26
Alignment explanation
Indices: 13124241--13124293 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13124231 GTTGACTTAG
*
13124241 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
*
13124267 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
13124293 G
1 G
13124294 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:13125175 original size:26 final size:26
Alignment explanation
Indices: 13125139--13125191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13125129 GTTGACTTAG
* *
13125139 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13125165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13125191 G
1 G
13125192 ATTGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13126975 original size:26 final size:26
Alignment explanation
Indices: 13126939--13126991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13126929 GTTGACTTAG
*
13126939 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13126965 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13126991 G
1 G
13126992 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13127385 original size:903 final size:900
Alignment explanation
Indices: 13122618--13137336 Score: 18710
Period size: 903 Copynumber: 16.4 Consensus size: 900
13122608 TCGCCGAAAG
*
13122618 CCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGCGGTGTGCGCACATGATGTGC
1 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG-GGTGTGCGCACATGATGTGC
* *
13122683 GATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCA
64 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
13122748 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
129 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13122813 GGGACACATTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGT
194 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
13122878 GCATGCCAGC-AAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
259 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * * *
13122942 TTTTAAAAAATCATGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTAGTCTTG
324 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
13123007 CCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCAT
389 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
13123072 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAAATCCACGGCTTGCGC
454 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
13123137 ATCCCGTCTCCCTGGCCGACGTAGT----G---CCCGCCTGTCCACTCATTTCGTCGGTTGGCTT
519 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
* * ** * * * * * *
13123195 AGGCATACGAAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGAGTTACCGTAGCAGGATCAG
584 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * *
13123260 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCAGCCCCTCTGGCCGGCTAAGT
649 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* **
13123325 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGG
714 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
13123390 AGTTCATTACCAGTCTAAGATCTGACCAGACCGAGGGTTGCGATAGCACATGCTAGGCTCGGGCA
779 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * *
13123455 TGTGCTGGTGGCGTATTTTTCTTTGTCAGGGCACCAT-------CAT---CGGAGAA
844 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACGGAGCATCACCGGAGAA
* * * * *
13123502 CCTGACCGGCGACATTAGGGTTCC-AGCTATCGGGGGGGCCGGGGGGGTGTGCGCACATGGTGTG
1 CCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * *
13123566 CGATGGGTGCTGGTACTTGGACCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGACCTCAC
63 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13123631 ACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT
128 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13123696 GGGAACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTG
193 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
13123761 TGCATGCCAACAAGAATACAAGGATCACGCCTACCAAGTTTGGGGCTAAAACTCCTTCCTAAAAA
258 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
13123826 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACCAGTTGTGC-
323 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT-CT
*
13123890 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGC
387 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
13123955 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATAAATCCACGACTTGC
452 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * **
13124020 GCATCCCGTCTCTCTGGCCGGCATAGT----G---CCTGCCCGCCCACTAATTTCGTCGGTTGGC
517 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
* * ** * * * *
13124078 TTAGGTATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGAGTTGCCGCAGCAGGATT
582 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATC
* * *
13124143 GGCAGCACGTAAAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGA
647 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** *
13124208 GCGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
712 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
13124273 GGAGTTCATTACCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAACACATGCTGGGCTCGGG
777 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* *
13124338 CATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCAT--C---G--T---CGGAGAA
842 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACGGAGCATCACCGGAGAA
* ** * * * *
13124387 CTTGACCGGTGACATTAGGGTTCC-AGCTATCGAGGGGGCCAGGGGGTGTGCGCACATGATGTGC
1 CCTGACCGACGGCATTGGGGTTCCGA-CGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13124451 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAATCTCGAGAACTCAC
64 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCAC
* * *
13124516 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAAT
128 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13124581 GGGGACACTTTTTTCAAATGGCCACGAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTG
193 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
13124646 TGCATGCCAACAAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAAATGCTTTC-AAAAA
258 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** ** * *
13124710 ATTTTAAAAAATCTTGAA-C-TCAAAAAGTTTCCAAAATCATGAAAAATAGAAAAGGAGTCGTCT
323 ATTTTAAAAAATCCCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
13124773 TTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGTC
387 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13124838 ATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGC
452 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
13124903 ACATCCCATTTCTCTGGCCGGCGTAGTGCCCTGCCGCCCGCCCGCCCTCCCGCCCATTCGTTTTG
517 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCC-CCCG----CCCGCCCACTCGTTTCG
* * *
13124968 TCAGTTGGCTTAGGTATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGC
573 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGC
** * ** * * ** * *
13125032 ATTAGGATTGGCAGCACGCAGAGGGGGACCC-AGTTGGTCCCCGACTTATGAATCCCTCCCCTCT
638 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
13125096 GGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCTAGT
702 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
13125161 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCAGACTGAGGGTTGTGACAGCACATGC
767 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGC
* * * * * * **
13125226 TGGGATCAGGCATGTGCTGGTGCCGTATTTTACTTTGTCGGGGCACCATCGTCGGAGCATCGTCG
832 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-ACGGAGCATCACCG
13125291 GAGAA
896 GAGAA
* * * * *
13125296 CCTAACTGGCGGCATTGGGGTTCCGATGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
1 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
* *
13125361 ATGGGTGCTGTTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
65 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13125425 CCCCTTAAATAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
130 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * * * *
13125490 GGACACTTTTTTCAAATGGCCACGAAATCTTGTGCACTTTGAGTTTTCAGTTGAATTTTTTTTTG
195 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
13125555 CATGCCAACAAGAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAATCCTTCCTAAAAAAT
260 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** * * * *
13125620 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACCAGTTGTGTTGC
325 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
13125685 CTTGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATT
390 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
13125750 GGAATGCAGAAATATAAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCA
455 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
13125815 TCCCGTCTCTTTGGCTGGCGTAGTTCCTG---CTCGCCCGCCCACTCGTTTCGTCGATTGGCTTA
520 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* * * *
13125877 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGATGTGGCAGCAGGATCAGC
585 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
13125942 AGCACGTAGAGAGGGACCCGGCCGAACCCCGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCG
650 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
13126007 CCCGCACGCTCGTTTCGTTGGTTAACTTAGGCAAACGGAGTTCATTCCCAGTTTAAGCATACGGA
715 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * * * * ** *
13126072 GTTCATTCCCAGTCTAAGAACGGGTCGGATCGAGGATTGCGACAGCACATGTTGGGCTCATGTAT
780 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
** ** * * * * **
13126137 GTGCTGGTGCTACGGTTTTCTTCGTCAGAGCACCATCGCCGAAGCATCGTCGGAGAA
845 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-ACGGAGCATCACCGGAGAA
* * * * * *
13126194 CCTGACCGGCGGCATTAGGGTTCCGGCGATCGAGGGGCCGGGGGGTGTGCACACATGATGTGGGA
1 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
13126259 TGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
66 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
13126324 CCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
131 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * * *
13126389 GACACTCTTTTCAAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTGGCGC
196 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * * *
13126454 ATGCCAACAAAAATACGAGGATCACGTCTATTAAGTTTGGGGTCAAAACTCCTTTCAAAAAAATT
261 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
13126519 TTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCC
326 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
13126584 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATCAATTTACAAGCCATAAAAATGGAATTG
391 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** *
13126649 GCACATAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
456 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
13126714 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGCCCTCTCGTTTCGTCGGTTGGCTTA
521 CCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* * * * ** * * *
13126779 CGCATGCGGAGTTCATTCACAGTCAAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
585 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
13126844 AGTACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGACCGACTGAGCG
650 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
13126909 CCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGA
715 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** *
13126974 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCATATGCCAGGCTCGAGCAT
780 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * * *
13127039 GTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCACCGGGGCATCACCGGATAA
845 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCACCGGAGAA
* * * *
13127096 CCTGACCGGCGGCATTGGGGTTCCGACGATCAGAGGGGTCGGGGGGTGTGCGCACATGATGTGCA
1 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
13127161 ATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAACCCTTGAGAACTCACAC
65 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13127226 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGTCAGTAGCCATTAAAGTGTCTGAAATGG
130 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
13127291 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTG
195 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** *
13127356 CATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTTGGAAAAATT
260 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** * ** * *
13127421 TTTTAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTCGTCTTGC
325 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
13127486 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATT
390 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
13127551 GGCACGTAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCA
455 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
13127616 TCCCGTCTCTCTGGCTGGCGTAGT-----------GCCCG----CTCGTTTCGTCGGTTGGCTTA
520 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* * ** * ** * *
13127666 GGCATACGGAGCTCACTCCCAGTCTAAGATTGGACCGAAAC-GAGGGTTGCGATAGTAGGATCAG
585 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-GACTGAGGGTTGCGGCAGCAGGATCGG
* * * * *
13127730 CAGCATGCAGAGGAGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGC
649 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
13127795 GCCCGTACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA-TCCCAGTCTAAGCATACGA
714 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
** *
13127859 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCA
779 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * * *
13127924 TGTGCTGTTGCAGCATTTTTCTTCGACGGGGAACCATCGTCAGAGCATCACCGGAGAA
844 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-ACGGAGCATCACCGGAGAA
** *
13127982 CCTGACCGGTGGCATTGGGGTTCC-ACCGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGT
1 CCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGG-C-CGGGGGGTGTGCGCACATGATGT
* * * *
13128046 GTGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTAA
62 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
13128111 CACCACCTTAAAAAGCATTTTAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
127 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13128176 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAAATTTTT
192 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
*
13128240 TGTGCATGCCAAC-AAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTTCC-AA
256 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAA
* *
13128303 AAAATTTTAAAAAATCCCTAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGT
320 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
13128368 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
385 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
13128433 GCATTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCGT
450 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** * *
13128498 GCGCATCTCGTGTCTCTGGCCTGCGTATTGCCCGCCCGCCCATCCGCCCGCTTGTTTCGTCGGTT
515 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCCCACTCGTTTCGTCGGTT
* * ** **
13128563 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGA-TGGAGGGTTGCAACAATAG
579 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAG
* * * * * * * * * *
13128627 GATTGGCAGCATGCAGAGGGGGACCCAACTGATCCCTGACTTCCGTATCCCGCCCTTCTGGCCAG
643 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
13128692 CTGAGCGCCCGCACGCTTGTTTCGTGGGTCGACTTTGGCATACGGCGTTCATTCCCAGTCTAAGC
708 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * **
13128757 ATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATTGAGGGTTGCG---G--CA------G--
773 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * **
13128809 CGGGCATGTGTTGGTGCGGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
838 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-ACGGAGCATCACCGGAGAA
* * * *
13128873 CCTAACCAACGGCAATGGGGTTCCGACGATCGTGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
1 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
13128938 TGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-AACTCACACC
66 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
13129002 CCCTTAAAGAACATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGG
131 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
13129067 GACATTTTTTTCAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
196 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
13129132 ATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGACAAAACTCCTTCTGAAAATATT
261 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
13129197 TTAAAAAATCCCGAACCTTAAAAAGTTTTGAAAATTGTCAAAAATAGAAAACGAGTCGTCTTGCC
326 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
** **
13129262 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGGATAAAAATTACATTG
391 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** * *
13129327 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCATGCGCAT
456 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
13129392 CCCGTGTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCACCCGCTTGTTTCGTCGGTTGGCTTA
521 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* * * ** * *
13129457 GGCATACGAAGTTCATTCCCAATCTAAGATTAGACCAAACTGAGGGTTGCGACAGTAGGATCGGC
585 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGC
* * * **
13129522 AGCACGCAGAGGGGGACCCAATCGATCCCAGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCG
650 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
13129587 CCCGTACGCTCGTTTCGTGTGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
715 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
** ** * **
13129652 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCGAGGGTTGCGGCAGCACATGCTGGGCTTAG
780 GTTCATTCCCAGTCTAAG-AT-CG--GACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
*
13129717 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---------T-ACCGGAGAA
841 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACGGAGCATCACCGGAGAA
* ** * * * * *
13129767 CCTGATCGGTGGTATTGAGGTTCCGACGATAGGGGGGCCGGGGGGTGTGCGCACATGATGTACAA
1 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
13129832 TGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTTATCAAACCTCGAGAACTCACACC
66 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
13129897 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGT
131 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * * * *
13129962 GATAGTTTTTGCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGATGAATGTTTTTGTGC
196 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
13130027 ATGCGAA-AAAAAGTACATGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
261 ATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * ** * *
13130091 TTTAAAAAATCCCAAATCGT-AAAAGGTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGC
325 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
13130155 CATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGCCATT
390 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
13130220 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCA
455 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * *
13130285 TCCCGTCTCTCTGGCCGGCATAGTGCCCG---CCCGCCCGCCTGCTTGTTTCGTCGGTTCGCTTA
520 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* * * * *
13130347 GGCATACGGAGTTCATTCCCTA-TGTAAGATCAGACCAGATTGAGGGTTACGGCAGCAGGATTGG
585 GGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * * *
13130411 CAGCACACAGAGGGGGACCCAACCGATCCCCAGCTTGTGCATCTCGTCGCTCTGGCCGGCTGAGT
649 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
13130476 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
714 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
13130541 AGTTCATTCCCAGTCTAAGATCGGATCAGA-CGTAGGGTTGCGACAGCACATGCTGGGCTTGGGC
779 AGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * * *
13130605 ATGTGCTAGTGCCGCGTTTTTCTTC-ACCGGG----A-CAC----CATCGCCGGAGAA
843 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACGGAGCATCACCGGAGAA
* * * * *
13130653 CCTGACCAACGACATTGGGGATCCAATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
1 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
13130718 TGGGTG-TCGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
66 TGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13130782 CCCCTTGAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
130 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
** *
13130847 GGGTACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTG
195 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
13130912 CATGCCAAAAAAAATACAAGGATCATGTCTACAAAGTATGGGGCCAAAACTCCTTCC-AAAAATA
260 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-A
* * *
13130976 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAATCGTCTTG
324 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
13131041 CCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTGA-GAGTTTACAAACCATAAAAATGTCA
389 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAATGGCA
**
13131105 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATC-GCTTGC
453 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGC
*
13131169 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCACTCGTTTCGTCGGTTGG
517 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCCCACTCGTTTCGTCGGTTGG
* * * ** * *
13131234 CTTA-GCAATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGA-TCAAGAATTGTGGCAGCAAG
581 CTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGG
* * * ** ** * * ** * * * * *
13131297 ATAGGTAGCACACAGAGGGGGACATGGTCGATACTCGAATTACGCATCCTGCCCCTCTAGCTGAC
644 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
13131362 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCA
709 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
13131427 TGCGGAGTTCATTCCCAGTCTAAGATCGGATC-GGCTCGAGGGTTGCGACAGCACATGCTGGGCT
774 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-CGAGGGTTGCGACAGCACATGCTGGGCT
* * * * * *
13131491 CTGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCGCAGGAGAA
838 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCACCGGAGAA
* * * * * * *
13131555 CCTGACAGATGGCATTGGGGTTACGACAATTAGGGGGGCCGAGGGGTGTGCAG-ACATGATGTGT
1 CCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGC-GCACATGATGTGC
* * *
13131619 GATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAAA
64 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13131684 CCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
129 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** * *
13131749 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCACAAGTTTTTAGCTAAATTTTTTTGT
194 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ***
13131814 GCATACGAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGTTGAAA-TGCCTTCCGAAAAA
259 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAA
** * * *
13131878 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT-GAAAAACAAGTCATCT
323 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG-AAAACGAGTCGTCT
*
13131942 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGC
387 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
13132007 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATTCACGGCTTGC
452 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * ** * * * *
13132072 GTATCTCGTCTCTCTAGTCGGCGTAGTGCCCGCTTGCCCGTCTGCCCACTCATTTCGTCGATTGG
517 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CCCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* * ** * *
13132137 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGTAGGAT
581 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
** * * * * * * * *
13132202 CGATAGCACACAGTGGAGGACACGATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGACTG
646 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
13132267 ACCGCCCGTACGCTCGTTTCGTGGGTTGACTAAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
711 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * **
13132332 CGGAGTTCATTGCCAATCTAAGATCGGACCGGACCGAGCGTTACGGTAGCACATGCTGGGCTCGG
776 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* * * * * * * *
13132397 GCATTTGCTGGTGCCACTTTTTTCTTCATTGAGGTACCATCATTGGAGCATCACCGGAGAA
841 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCACCGGAGAA
* * *
13132458 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGTCGGGGGGGTGTGCGCACATGATGTGCG
1 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCG
*
13132523 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
65 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
13132588 CACCTTAAATAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
130 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
13132653 GGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TG
195 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** **
13132717 CATGCCAAAAAAAAAATACAAGGATCATGTCTACCACA-TTTGATAG-CAAAACTCCTTTTGAAA
260 CATGCC--AACAAAAATACAAGGATCACGTCTACCA-AGTTTG-GGGCCAAAACTCCTTCCGAAA
* *
13132780 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
321 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * **
13132845 TTGCCATGAAACTTCACATGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATAT
386 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13132910 CATTCGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCTTATCGATCCACGGCTTG
451 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
13132975 CGCATCTCGTCTCTCTGGCCGACGTAGTGACCG---CCCGTCCG----CTCATTTCATCAGTTGG
516 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGG
** * * * * *
13133033 CTTAGGCATACGGAGTTCATTCGTAGTCTAACATCCGACCGGAGTGAGGGTTGTGGCAGCAAGAT
581 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
*** * * * **
13133098 CGGCAGCACAG-AGAGTCAGACCCGATCGATCCCCGGTTTACGCATCCCGCCCCTCTGGCCGATT
646 CGGCAGCAC-GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
13133162 CAGCACCCGGACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
710 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
13133227 ACGGAGTTCATTCCCAATCTCAGATCGGACCAGACTGAGGGTTGCGACAGCATATGTTGGGCTCG
775 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* *
13133292 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCAT--C---G--T---CGAAGAA
840 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACGGAGCATCACCGGAGAA
* * ** * *
13133343 CCTGACCGACGGCATTGGGGTTTCGATGATTAGAGGGCC-GGGGGTGTGCGCACTTGATGTGCGA
1 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
13133407 TGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
66 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
13133472 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGA
131 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
13133537 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
196 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
13133602 GTGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
261 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** * ** * *
13133667 TTAAAAAATCCCAAACCACAAAACGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
326 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
13133732 ATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTG
391 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
13133797 GCATGGAGAAATATGAAGATGTCCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGTAT
456 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * **
13133862 CTCGTCTCTCTGGCCGGCGTAGTGACCGCCCGTCCGCCCGTCCGCCCGTCCGCTCATTTCGTTAG
521 CCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-CCC--CCGCCCGCCCACTCGTTTCGTCGG
* * * **
13133927 TTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAACATCCA-ACTGGACCT-AGGGTTGTAGCAG
577 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCGGA-CTGAGGGTTGCGGCAG
** * * *** ** * *
13133990 CAATATCGCCAGCACGGAGAGTCAGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCACTCTGGC
640 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
*
13134055 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTA
705 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
13134120 AGCGTATGGAGTTCATTCCTAATCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGTTGG
770 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGG
* **
13134185 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAAGGCACCAT--C---GC--CA---GAGA
835 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACGGAGCATCACCGGAGA
13134240 A
900 A
* * * * * * *
13134241 CCTGACCAACGGCATTGAGGTTTCGACGATTAGGGGGG-CTGGGGGTGTGCACACTTGATGTGCG
1 CCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
13134305 ATGGGTGGTTGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
65 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13134370 CCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGC
130 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
13134435 AGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
195 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** *
13134500 CGTGCCAACAAAAATACAAGGATCACGTCTAATAAGTTTGGGGCCAAAACTCCTTCCGAAAAGAT
260 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * ** * * * *
13134565 TTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTCGC
325 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
13134630 CAAGAATCTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATT
390 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
13134695 GGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
455 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
13134760 TCCCGTCTCTCTGGCCGACGTTGTGCCCG---CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
520 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* ** * * *
13134822 GGCATACGGAGTTCATTTCCAGTCTAAGATTGGATCAGATTGAGGGTTGCGGCAGCAGGATCGGT
585 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGG-
* * * * * * * * *
13134887 C-GCATGAAGAGGGGGACCTGGCCGTTCCCCAGCTTACGCATCCCGCACCTCTGGCGGGCTGAGC
649 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
13134951 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATATGG
714 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
13135016 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGTTTGCGACAGCAAATGCTGGGCTCGGGCA
779 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * ** * *
13135081 TGTGCCGGTGCTGCATTTTTCTTCACCGGGGAACCATCATCAGAGCATCACCGGAGAA
844 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCACCGGAGAA
13135139 CCTGACCGACGGCATTGGGGTTCCG-CTGATCGAGGGGGCCGGGGAGGGTGTGCGCACATGATGT
1 CCTGACCGACGGCATTGGGGTTCCGAC-GATCG-GGGGGCC-GGG-GGGTGTGCGCACATGATGT
*
13135203 GCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
62 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13135268 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGAAA
127 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
13135333 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGATGAATTTTTTT
192 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
13135398 GTGCATGCCAATAAAAATACAAGGATCACTTCCACCTAGATTGGGGCCAAAACTCCTTCTGAAAA
257 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
13135463 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCT
322 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* **
13135528 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCTC
387 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
13135593 ATTTTCATGCAGAAATATGAAGATATGCCTAAGCCCACCTACCACCCTATCGATCCACGACTTGC
452 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
13135658 GCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCTCGCCCGCCCGCCCGCCCACTCGTTTCGTCGG
517 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCC-CCCGCCCGCCCACTCGTTTCGTCGG
* * ** * *
13135723 TTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCGGTAGCA
577 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCA
* * * * * *
13135788 GGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGTCG
642 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
13135853 ACTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
707 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
13135918 CATACGGAGTTCATTCACAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGGC
772 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * *
13135983 TCGGGCATGTGCTGGTGCC-CATTCTTCTTCGTCAGGGCACCATCGCTGGAGCATCGCCAGAGAA
837 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAC-GGAGCATCACCGGAGAA
* * * *
13136047 CCTGACCGACGGCAATGGGGTTCC-TCTGATCGGGGGGGTCGGGGAGGGTGTGCACACATGATGT
1 CCTGACCGACGGCATTGGGGTTCCGAC-GATC-GGGGGG-CCGGG-GGGTGTGCGCACATGATGT
* * * *
13136111 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCTCTATCCCTCATCAAACCTTGAAAACTCA
62 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* **
13136176 CACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTTAA
127 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13136241 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTT
192 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
13136306 GTGCATGCCAATAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTGTGAAAA
257 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
13136371 AATTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
322 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
13136436 TGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGC
387 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* **
13136501 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCGGCCACCCTATCGATCCACGGCTTGC
452 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
13136566 GCATCCCGTCTCTCTAGCCAGAGTAGTGCCCG---CCCGCCCG----CTCATTTCGTCGGTTGAC
517 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
* * * * *
13136624 TTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAATCGGACCGAGGGTTG-GGCAGCAGGTT
582 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * *
13136687 CGGCAGCACGTAGAGAGGGACCCGGCCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCGACTG
646 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
13136752 AGTGCCCCCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCAAAGCATA
711 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
13136817 CGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAAGATTGCGGCAGCACATGCTGGGCTCGG
776 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* * * *
13136882 GCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGCCACCATCACCGAAGCATCACCGGAGAA
841 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCACCGGAGAA
* * *
13136943 CCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATATGTGA
1 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
13137008 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACAAC
66 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
13137073 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAATAGCCATTAAAGTGTCTGAAATTGG
131 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
13137138 GACACATTTTTCAAAATGGTCACAAAATCTTGTACACTTCGAGATTTTAACTCAATTTTTTTGTG
196 GACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
13137203 CATGCCAAAAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAGAAT
260 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
**
13137268 TTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
325 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
13137333 CATG
390 CATG
13137337 GCTTGCACAT
Statistics
Matches: 12156, Mismatches: 1458, Indels: 432
0.87 0.10 0.03
Matches are distributed among these distances:
881 3 0.00
882 251 0.02
883 388 0.03
884 342 0.03
885 837 0.07
886 520 0.04
887 1003 0.08
888 772 0.06
889 9 0.00
890 230 0.02
891 342 0.03
892 20 0.00
893 151 0.01
894 480 0.04
895 410 0.03
896 390 0.03
897 135 0.01
898 1243 0.10
899 526 0.04
900 17 0.00
901 461 0.04
902 370 0.03
903 1597 0.13
904 312 0.03
905 47 0.00
906 2 0.00
907 172 0.01
908 577 0.05
909 547 0.04
910 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACGGAGCATCACCGGAGAA
Found at i:13128767 original size:26 final size:26
Alignment explanation
Indices: 13128729--13128781 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13128719 GTCGACTTTG
*
13128729 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13128755 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13128781 G
1 G
13128782 ATCTGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13129646 original size:26 final size:26
Alignment explanation
Indices: 13129617--13129686 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
13129607 GTTGACTTAG
13129617 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13129643 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13129669 GCATACGAAGTTCATTCC
1 GCATACGAAGTTCATTCC
13129687 GAGGGTTGCG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13130537 original size:26 final size:26
Alignment explanation
Indices: 13130507--13130559 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13130497 GTTGACTTAG
13130507 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13130533 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13130559 G
1 G
13130560 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13131434 original size:26 final size:26
Alignment explanation
Indices: 13131398--13131450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13131388 GTTGACATAG
13131398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13131424 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13131450 G
1 G
13131451 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13132336 original size:26 final size:26
Alignment explanation
Indices: 13132296--13132353 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
13132286 CGTGGGTTGA
* *
13132296 CTAAGGCATATGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAAT
*
13132323 CTAAGCATACGGAGTTCATTGCCAAT
1 CTAAGCATACGGAGTTCATTCCCAAT
13132349 CTAAG
1 CTAAG
13132354 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAAT
Found at i:13133900 original size:8 final size:8
Alignment explanation
Indices: 13133887--13133914 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
13133877 GGCGTAGTGA
13133887 CCGCCCGT
1 CCGCCCGT
13133895 CCGCCCGT
1 CCGCCCGT
13133903 CCGCCCGT
1 CCGCCCGT
13133911 CCGC
1 CCGC
13133915 TCATTTCGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.64, G:0.25, T:0.11
Consensus pattern (8 bp):
CCGCCCGT
Found at i:13135921 original size:26 final size:26
Alignment explanation
Indices: 13135891--13135943 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13135881 GTTGACTTAG
13135891 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCAC-AGTCTAA
13135917 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
13135943 G
1 G
13135944 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:13137550 original size:138 final size:138
Alignment explanation
Indices: 13137302--13137580 Score: 522
Period size: 138 Copynumber: 2.0 Consensus size: 138
13137292 AGTTTTGAAA
*
13137302 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGGCTTGCACATCCCGTCTCTCTAGCCAGCGT
1 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGGCTTGCACATCCCGTCCCTCTAGCCAGCGT
* *
13137367 AGTGCCCGCCCGCCCGCCTGCCCGCTTGTTTCGTCGGTTGTCTTAGGCATACGGAGTTCATTCCC
66 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
13137432 AGTCTAAG
131 AGTCTAAG
*
13137440 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGGCTTGCACATCCCGTCCCTTTAGCCAGCGT
1 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGGCTTGCACATCCCGTCCCTCTAGCCAGCGT
13137505 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
66 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
13137570 AGTCTAAG
131 AGTCTAAG
13137578 ATC
1 ATC
13137581 AGATCGGACC
Statistics
Matches: 137, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
138 137 1.00
ACGTcount: A:0.19, C:0.32, G:0.24, T:0.25
Consensus pattern (138 bp):
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGGCTTGCACATCCCGTCCCTCTAGCCAGCGT
AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAG
Found at i:13138459 original size:26 final size:26
Alignment explanation
Indices: 13138423--13138476 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
13138413 GTTGACTTAG
*
13138423 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
13138449 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13138475 GC
1 GC
13138477 TCAGACCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13139853 original size:725 final size:708
Alignment explanation
Indices: 13138449--13140194 Score: 2257
Period size: 725 Copynumber: 2.4 Consensus size: 708
13138439 CCCAGTTTAA
* * *
13138449 GCATACGGAGTTCATTCCCCGTCTAAGCTCAGACCAGACCGAGGGTTGCGATAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGCGATAGCACATGCTGGG
* * * * * * *
13138514 CTCGGGCATGTGCTGGGGCTGCATTTTTCATCG-CCAGGGCACCATTACGTTAGCATCACAGGAG
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATTTCG-GAGCATC-C-GGAG
* *
13138578 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGCGGGGGCTGTGCGCACATGAT
126 AACCTGACCGACGGCATTGGGGTTCCGGCGATC-GA-GGG-AGGCGGGGG-GGTGCGCACATGAT
* *
13138643 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACT
187 ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACC-TCAGAACT
* * *
13138708 CACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTTTTTGA
251 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
* *
13138773 AATGGGGACACTTTTTTCGAATGGTCTCAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTT
316 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTT
* *
13138838 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAA
381 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTTCGTTCGAA
* *
13138903 AAAATTTTAAAAAATCCCGAAACGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
446 AAAATTTAAAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
* * *
13138968 CATGCCATGCAACTTCACGTGAAGGCTTAGGGGACCATTGCATGAATTTACAAGCCATAAAAATG
511 CATGCCATGCAACTTCACGTGAAGGCTCAAGCGACCATTGCATGAATTTACAAGCCATAAAAATG
* * * *
13139033 ACATTGGCATGCAGAAATATGAAGATTTGCTTAAACCCACCTAGCACCCTATGGATCCACGGCTT
576 ACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
13139098 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTTTGCCCGCCCGCCTATCCAGCCGTTCGTTT
641 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC----GCCCG--C-CC-A-CCAG-C-TT-GTTT
*
13139163 TATCAGTTGGCTTAG
694 CATCAGTTGGCTTAG
* *
13139178 GCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACCGATGGTTGCTG-TAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGC-GATAGCACATGCTGG
*
13139242 GCTCGAGCATGTGCTGATGCCGCATTTTTCTTCGTCGAGGCACCATTGTCGGAGCATCGCCGGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATT-TCGGAGCAT--CCGGAG
** * *
13139307 AACCTGACCGGTGGCATTGGGGATCCGACGAT-GAGGGAGGCGGGGAGGGTGCGCACATGATATG
126 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGAGGCGGGG-GGGTGCGCACATGATATG
** * ** *
13139371 AAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCAATATCCCTTATCAAACCTCAAAAGCTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAGAA-CTCAC
* *
13139436 ACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
254 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
* * *
13139501 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGATTTTTTTTG
319 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
13139566 TGCCA-GCCAACAAAAATACAAGGATCATGTCTAACAAGTTTGGGGCCAAAACTTCGTTCGAAAA
384 TG-CATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTTCGTTCGAAAA
* * ** * * *
13139630 AATTTAAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCT
448 AATTTAAAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCA
* *
13139695 TGCCATGCAACTTCACGTGAAGGCTCAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGC
513 TGCCATGCAACTTCACGTGAAGGCTCAAGCGACCATTGCATGAATTTACAAGCCATAAAAATGAC
* * * *
13139760 ATTGGCATGTAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGT
578 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * *
13139825 GCATCCCGTCTCTCTGGTTGGA-GTAGTGCCCGCCCGCCCACCCGCTTGTTTCATCGGTTGGCTT
643 GCATCCCGTCTCTCTGG-CCGACGTAGTGCCCGCCCGCCCACCAGCTTGTTTCATCAGTTGGCTT
13139889 AG
707 AG
*** * * *
13139891 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGTGTTACGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-GTTGCGATAGCACATGCTGGG
* * *
13139956 CTC-AGGCATGTACTGGTGCCGTATTTTTCTTCGAT-GGGGCACCATTTTC-GA--A-----A-A
65 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCG-TCGAGGCACCA-TTTCGGAGCATCCGGAGA
* * * *
13140010 ACCTGATCGACGGCATTGGGGTTCCGGTGATCG-GGGGGGCCGAGGGGGTGTGCGCACATGATCT
127 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGAGG-CG-GGGGG-GTGCGCACATGATAT
* *
13140074 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTC-AGAACTCA
* *
13140139 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCGTTAAAG
253 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAG
13140195 ATATGCCTAA
Statistics
Matches: 897, Mismatches: 101, Indels: 63
0.85 0.10 0.06
Matches are distributed among these distances:
702 31 0.03
703 6 0.01
704 122 0.14
705 3 0.00
710 1 0.00
712 5 0.01
713 108 0.12
714 5 0.01
715 1 0.00
716 3 0.00
717 1 0.00
718 2 0.00
719 1 0.00
721 5 0.01
724 4 0.00
725 451 0.50
726 8 0.01
727 2 0.00
729 131 0.15
730 6 0.01
731 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCGATAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATTTCGGAGCATCCGGAGAACCT
GACCGACGGCATTGGGGTTCCGGCGATCGAGGGAGGCGGGGGGGTGCGCACATGATATGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTTCGTTCGAAAAAATTTAAA
AAAATCCCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCATGCCATGC
AACTTCACGTGAAGGCTCAAGCGACCATTGCATGAATTTACAAGCCATAAAAATGACATTGGCAT
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCAGCTTGTTTCATCAGTTGGCTTAG
Found at i:13141626 original size:717 final size:708
Alignment explanation
Indices: 13140192--13142496 Score: 3225
Period size: 717 Copynumber: 3.2 Consensus size: 708
13140182 GTAGCCGTTA
* * *
13140192 AAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTCTCGGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCACATCCCGTCTCTCTGGCC
* * * *
13140257 GGCAATGTGCCCGCCAGCCCACCCGCCCGCTCGTTTCGTCGGTTCGCTTACGCATACGAAGTTCA
66 GGC-A-GT-ACCGCCAGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * ** *
13140322 TTCCCAGTCAAAGATCAGATCGTCCTGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
128 TTCCCAATCTAAGATCAGACCGGACTGATGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCT
* *
13140387 GGTGCCGCATTTTTCTTTGTCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGC
192 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC--CGGAGAACCTGACCGACGGC
* ** *
13140452 ATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGG
255 ATTGGGGTTTCGACAATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
13140517 TACTT-AGCCCCTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
318 TACTTGA-CCCCTATATTGGCCC-CTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAG
** **
13140581 AGCATTTGAGATTTTACAGGTTTGCTAACAGTAGCCATTAAAGTGTCTAAAATGATGACACTTTT
380 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTT
* * * *
13140646 TTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATATTTTTGTGCATGCCAACA
444 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
*
13140711 AAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
509 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
13140776 CCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAAAAAAATGAGTCGTC-TGCCAT-AAACT
574 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACT
*
13140839 TCACGTGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
638 TCACGT-GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG-ATGAA
13140904 GAAATATG
701 GAAATATG
13140912 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TGGCACATCCCGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCACATCCCGTCTCTCTGGCC
* * * *
13140976 GGCATTGTACCCGCCAGCCCACCCGCCTGCTCATTTCGTCGATTGGATTAGGCATACGGAGTTCA
66 GGCA--GTA-CCGCCAGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *
13141041 TTCCCAATCTAAGATCAGATCGGACTGATGGTTGCGGCAGCACATGCTGGACTCGAGCATGTGCT
128 TTCCCAATCTAAGATCAGACCGGACTGATGGTTGCGGCAGCACATGCTGG-CTCGGGCATGTGCT
13141106 GGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGG
192 GGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCAT--CCGGAGAACCTGACCGACGG
* * *
13141170 CATTGGGGTTTCGGCAATTGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGT
254 CATTGGGGTTTCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
13141235 ACTTGACCCCTATCTTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACTCCCTTAAAGAG
319 ACTTGACCCCTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACAC-CCCTTAAAGAG
* *
13141300 AATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTT
382 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTTTT
13141365 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
446 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * *
13141430 AATACATGGATAATGTCTACCAAGTTTGGGGCCAAAACTCCGTT-CGAAAAAATTTTAAAAAATC
511 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATC
* ** *
13141494 CCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTC
575 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * ** *
13141559 ACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGTAATTAGGATGGAGAA
640 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GGATGAAGAA
13141624 ATATG
704 ATATG
* * *
13141629 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCACATCCCGTCTCTCTGGCC
** ** * * *
13141694 GGC-GTAGTGCTTGCCCGCCCGCTCGCTCGTTT-GCTCGGTTGGCTTAGGCATACAGAGTTCATT
66 GGCAGTACCGCCAGCCCACCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
13141757 CCCAATCTAAGATCAGACCGAACTGATGGTTACGGCAGCACATGCTAGGCTCGGGCATGTACTGG
130 CCCAATCTAAGATCAGACCGGACTGATGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGG
* * * *
13141822 TGCCGTATTTTTCTTCGTCGGGGCACCATCGT-------T--GGAGAACCTGACTGGCGACATTG
194 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGACCGACGGCATTG
* *
13141878 GGGTTTCGACAATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCCGGTACTTG
259 GGGTTTCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
13141943 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAAGAGCATT
324 ACCCCTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC-TT-AAAGAGCATT
* *
13142008 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATAAATGGGGACACTTTTTTCACAT
386 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTTTTTCAAAT
* * * * **
13142073 GGTGAGAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCATGAAAAATAC
451 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
*
13142138 AAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCCGAA
516 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAA
* *
13142203 CCGTGAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
580 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
13142268 AAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCACTGCCATGAAAAAATATG
645 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG-GATGAAGAAATATG
* *
13142333 AAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCACATCCCGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCACATCCCGTCTCTCTGGCC
* *
13142398 GGCA-TA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
66 GGCAGTACCGCCAGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
13142458 CTAGTCTAAGATCAGACCGGACCGA-GGCTTGTGGCAGCA
131 CCAATCTAAGATCAGACCGGACTGATGG-TTGCGGCAGCA
13142497 AGATCGGCAG
Statistics
Matches: 1433, Mismatches: 127, Indels: 70
0.88 0.08 0.04
Matches are distributed among these distances:
699 2 0.00
700 79 0.06
701 1 0.00
702 6 0.00
703 252 0.18
704 242 0.17
707 1 0.00
713 1 0.00
714 130 0.09
715 6 0.00
716 13 0.01
717 402 0.28
718 46 0.03
719 211 0.15
720 40 0.03
721 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (708 bp):
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCACATCCCGTCTCTCTGGCC
GGCAGTACCGCCAGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAATCTAAGATCAGACCGGACTGATGGTTGCGGCAGCACATGCTGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGACCGACGGCATTGGG
GTTTCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGAC
CCCTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGATGAAGAAATATG
Found at i:13142636 original size:26 final size:26
Alignment explanation
Indices: 13142600--13142652 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13142590 GTTGACTTAG
13142600 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
13142626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
13142652 G
1 G
13142653 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:13143126 original size:895 final size:895
Alignment explanation
Indices: 13141741--13147872 Score: 7493
Period size: 899 Copynumber: 6.8 Consensus size: 895
13141731 GTTGGCTTAG
* * * * * * * *
13141741 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACTGATGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGCGACAGCACATGCTGGG
* * *
13141806 CTCGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---TC---G--T--T-GGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * * * *
13141860 ACCTGACTGGCGACATTGGGGTTTCGACAATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13141925 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13141990 CCCCTTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTAT-AAAT
260 CCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
13142054 GGGGACACTTTTTTCACATGGTGAGAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
13142119 TGCATGCCATGAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
13142184 ATTTTAAAAAAATCCCGAACCGTGAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13142249 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
13142314 ACTGCCATGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
13142379 ACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
13142444 TACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGCTTGTGGCAGCAAGATCGGCAGCA
714 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGCAGCA
* * * *
13142509 TGTAGAGGGGGACCCGGCCGAT-CCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCC
779 CGCAGAGGGGGACCCGGCCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
13142573 GCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAA
843 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13142626 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGG
* ** * *
13142691 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTTAGGGCACCATCGTCGAAGCATCACCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* *
13142756 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCTGGGGGGTGTGCGCAC-TGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13142820 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
13142885 CCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAACG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13142950 GGGACTA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTG
325 GGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * *
13143014 TGCACACCAGCAAAAATAGAAGGATCATGTCTTCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** *
13143079 ATTTTAAAAAAATCTCGAATTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
454 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
13143144 TGCCATGAAACATCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACTAGCGATAAGAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13143209 ATTGGCATGAAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13143274 GCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCTCCCGCCCGCTCGTTTTGTCAGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * * *
13143339 GTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGATCAGACTGAGGGTTGTGGCAGTAGGAT
706 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA--A-
** *
13143404 TGGATCAAAACAAGGGTTGCAGCAACAGGATCGGCAGCACGCAGAGGGGACCCGATCGATCCCCG
768 --GAT-----C----G--GCAG---C---A----C-GCA-G-AG-GGGGACCCGGCCGATCCCTG
* * *
13143469 GCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGG
806 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
13143534 CATACGGAGTTCATTCCCAGTCTAA
871 CATACGGAGTTCATTCCCAGTCTAA
*
13143559 G-AT-C--AG---------A--C------C-GA---ACCGAGGGTTGCGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGACAGCACATGCTGGGC
* ** * *
13143599 TCAGACATGTGCTGGTGCAACATTTTTCTTTGCCGGGGCACCATCGCTGAGGCATTGCCGGAGCA
66 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--C----G---T--CGGAGCA
* * *
13143664 TCGTCGGAGCATCGCTGGAGAACCTGACCGACGGTATTGGGTTTTCGACGATCGGGGGGGCCAGG
120 ---T-----CAT--C-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG
* * *
13143729 GGGGTGTGCAC-CATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCT
173 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * * * * *
13143793 CATCAATCCTGGAGAACTCGCACCCCTTTAAAAAGCACTTCA-ATTTTACAGGTTTGCTGCCAGT
238 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
13143857 AGCCATTAAGGTGTCTGAAATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGA
303 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
13143922 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTT-GG
368 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
13143986 G--AAAACT-TTTTCTGAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTG
433 GCCAAAACTCCTTTC-GAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
13144047 AAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
497 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * * *
13144112 ATTTACAAGCCATGAGAATGGCATTGGTAGGCAGAAATATGAAGATGTACCTAAATCCACCTACC
562 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
13144177 ACCCTATCGATCCACGGCTCGCGCATCCCGTCTCCCTGGCCGGGGTAGTGCCCGCGCGCCCTCTC
627 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CG--C-C-C
* * ** *
13144242 GCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATTGGATCAGA
684 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** * ** *
13144307 CTAAGGGTTGTGGCAG-AAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCTGACTTGCG
749 CCGAGGGTTGTGGCAGCAA-GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCG
* * * * * *
13144371 CATCACGCCCCTCTGGCCGACTGAGC-CCTCGTACGCTCATTTCATGGGTTGACCTAGGCATACG
813 CATCCCGCCCCTCTGGCCGGCTGAGCGCC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
13144435 GAGTTCATTCCCAGTCTAA
877 GAGTTCATTCCCAGTCTAA
** * * **
13144454 GCATAAAGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
13144519 CT-TGCGCATGTGGTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCATCGCAG
65 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
* * *
13144583 AACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTA
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
13144648 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
13144713 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAG-CAGTAGCCGTTAAAGTGTCTAAAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAA
* *
13144777 TGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGGTTTT-GCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
13144841 GTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCC-TTCTGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
** * *
13144905 AAATTTT-AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
452 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
13144969 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *** * *
13145034 GCAGTGGCACATAGAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACAGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
13145099 GCGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCCTCAGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCT
* * * *** * *
13145164 TAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACTGAGAGTTACAGTAG-TAGCATC
708 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAG-ATC
* * ** * *
13145228 GACAGCACACAGAGGGGGACCCGGTTGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGA
772 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
13145293 GCGCCCGTACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
13145352 G-AT-C---G--------CA--C------C--A--GACCGAGGGTTGC-AGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGA-CAGCACATGCTGGG
* ** * * * *
13145391 CTCAGGCATATGCTGGCACCGCATTTCTCTTCGTCGGGACACTATCGCCGGAGCATCATCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * *
13145456 ACCTGACCGAAGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13145521 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCAGA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
13145586 CCCCCTTAAAGAGTATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTG-ATGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13145650 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTGTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
13145715 GCATGCCAACAAAAAAATAGGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAA
** * *
13145779 ATTTT-AAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCT
454 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
** *
13145843 TGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
13145908 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATTCACGGCATGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13145973 GCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCTCCCGACCGCCCGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG------C--CCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
13146038 CTTAGGCCTACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACAAGGGTTGTGGTAGCAGGAT
706 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGAT
* * * * *
13146102 CGGCAGCATGCAGAGGGGGACCCGGCCGATCCCTAGCTTGTGCATCCCACCCCTCTGGCCTGCTG
771 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
13146167 AGCGCCCGCACGCTCGTTTCGT-GGTTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13146227 GCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
13146292 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATTG-CTAGAGCATCATAGGAA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCATCGGAG
* * * * ** *
13146356 AACTTTATC-AGCGGCATTGAGGTTCCGGTGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
13146420 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
13146485 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13146550 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
13146615 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTAGGGCCAAAATTCCATTT-GAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTCGAAA
* * *
13146679 AAGTTTTAAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAGTAGAAAACGAGTCGT
452 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
13146744 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
13146809 GCATTGGCATGCAGAAATATAAAGATGTACCCAAACCAACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
**
13146874 GCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCT
* * * *
13146939 TAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTTGTGACAGCAAGATTG
708 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCG
* *** *
13147004 GCAGTACGCAGAGGGGGACCCGGCCGATCCCCAACTTGGGCATCCCGCCCCTCTGGCCGGCTGAG
773 GCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
13147069 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13147127 GCATACGGAGTTCATTCCCATTCTAAGATCGGATCAGATCGAAGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTGCGA-CAGCACATGCTGG
* *
13147191 GCTC-GAGCATGTGCTGGTGCCGCATTGTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
64 GCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGA
* * * * * * *
13147255 AAACATGATCGGCGGCATTAGGTTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
13147319 GGGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13147384 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCAATTAAAGTGT-TCGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
* *
13147448 TTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
13147513 TGTACATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCAATTT-GAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTTCGAA
** ** *
13147577 AAAATTTTAAAAAAATCTTGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
451 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
13147642 TCTTGACATGAAACTTCACTTGAAGGCTTAAGGGACCGTTGTATAAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
13147707 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * * * *
13147772 TGCATATCCCATCTCTCTGTCCAGCGTAATGCCCGCCCACCCGTCTGCCCATTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCC--C-G--C--TCGTTTCGTCGGT
* *
13147837 TGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGA
703 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
13147873 GTGGATCAGA
Statistics
Matches: 4546, Mismatches: 507, Indels: 370
0.84 0.09 0.07
Matches are distributed among these distances:
871 52 0.01
872 523 0.12
873 1 0.00
874 4 0.00
875 121 0.03
876 59 0.01
877 2 0.00
878 2 0.00
880 4 0.00
883 1 0.00
885 94 0.02
886 1 0.00
888 4 0.00
890 1 0.00
891 1 0.00
893 2 0.00
894 53 0.01
895 491 0.11
896 63 0.01
897 6 0.00
898 196 0.04
899 723 0.16
900 353 0.08
901 252 0.06
902 343 0.08
903 321 0.07
904 2 0.00
905 1 0.00
906 1 0.00
907 65 0.01
908 4 0.00
909 4 0.00
910 8 0.00
911 3 0.00
912 1 0.00
913 2 0.00
915 2 0.00
916 2 0.00
917 3 0.00
918 7 0.00
919 5 0.00
920 6 0.00
921 66 0.01
922 2 0.00
923 4 0.00
924 3 0.00
925 276 0.06
926 19 0.00
928 5 0.00
929 179 0.04
930 97 0.02
931 2 0.00
932 4 0.00
933 98 0.02
934 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGACAGCACATGCTGGGC
TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGCAGCACG
CAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13146237 original size:26 final size:26
Alignment explanation
Indices: 13146201--13146253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13146191 TTCGACTTAG
13146201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13146227 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13146253 G
1 G
13146254 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13147137 original size:26 final size:26
Alignment explanation
Indices: 13147101--13147153 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13147091 GTTGACTTAG
13147101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13147127 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13147153 G
1 G
13147154 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13148510 original size:721 final size:718
Alignment explanation
Indices: 13147127--13148613 Score: 2209
Period size: 721 Copynumber: 2.1 Consensus size: 718
13147117 CCCAGTCTAA
* *
13147127 GCATACGGAGTTCATTCCCATTCTAAGATCGGATCAGATCGAAGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAAGGTTGCAGCAGCACATGCTAGG
* * *
13147192 CTCGAGCATGTGCTGGTGCCGCATTGTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAAA
66 CTCGAGCATGTGCTGGTGCCGCATTGTTCTTCGTCGGGGCACCATCATCGGAGCACCATCGGAAA
* * * *
13147257 ACATGATCGGCGGCATTAGGTTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGGG
131 ACATGACCGGCGGCATTAGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
13147322 ATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
13147387 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCAATTAAAGTGTTCGAATTGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAGCAGTAGCAATTAAAGTGTTCGAAATGG
**
13147452 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTA
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTA
* * *
13147517 CATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCAATTTGAAAAAAT
391 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGACAAAAACTCAATTTGAAAAAAT
*** *
13147582 TTTAAAAAAATCTTGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
456 TTTAAAAAAATCCCAAACTATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTG
*
13147647 ACATGAAACTTCACTTGAAGGCTTAAGGGACCGTTGTATAAATTTACAAGCCATAAAAATGGCAT
521 ACATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCAT
** * *
13147712 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCAT
586 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCAC
* * *
13147777 ATCCCATCTCTCTGTCCAGCGTAATGCCCGCCCACCCGTC-TGCCCATTCGTTTCGTCGGTTGGC
651 ATCCCATCTCTCTGGCCAGCGTAATGCCCGCCCACCCG-CAAGCCCACTCGTTTCGTCGGTTGGC
13147841 TTAG
715 TTAG
* * *
13147845 GCATACGAAGTTTATTCCCAGTCTAAGAGT-GGATCAGA-CTGAGGGTTGCAGCAGCACATGCTA
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGGATCAGATC-GAAGGTTGCAGCAGCACATGCTA
* * * *
13147908 GGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCACCATCGGA
64 GGCTCGAGCATGTGCTGGTGCCGCATTGTTCTTCGTCGGGGCACCATCATCGGAGCACCATCGGA
* * *
13147973 GAACCTGACCGGTGGCATTAGGGTTCCAGCGATCGAGGGGGCCGGGGGGGTTGTGCGCACATGAT
129 AAACATGACCGGCGGCATTAGGGTTCCAGCGATCG-GGGGGCC-GGGGGG-TGTGCGCACATGAT
* *
13148038 GTGCGATTGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
**
13148103 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAGCAGTAGCCGTTAAAGTG-TCTG
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAGCAGTAGCAATTAAAGTGTTC-G
13148167 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTT
* * * *
13148232 TTTGTGCATGCCAACAAAAATAAAAGTATCACGTCTACCAAGTTTTGGGGCAAAAACTC-CTTTC
385 TTTGTACATGCCAACAAAAATAAAAGGATCACGTCTACCAAG-TTTGGGACAAAAACTCAATTT-
* *
13148296 GAAAAAA-TTTGAAAAAATCCCAAA-TCGTAAAAAGTTTCAAAAATCGTGAAAAA-AAGAAAACG
448 GAAAAAATTTTAAAAAAATCCCAAACT-ATAAAAAGTTTCAAAAATCGTGAAAAATAA-AAAACG
* * * *
13148358 AGTCATCTTGCCATGAAACTTCA-TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCGT
511 AGTCATCTTGACATGAAACTTCACT-TGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCAT
* * * *
13148422 AAAAATGGTATTGGCACACAAAAATATGAAGGTGTGCCTAAAGCTACCTACCACCCTATCGATCC
575 AAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** * * *
13148487 ATGGCTTGCACATCCTGTCTCTCTGGCCAGCGTAGTGCCCGCCCCCCCGCAAGCCCGCTCGTTTC
640 ATGGCTTGCACATCCCATCTCTCTGGCCAGCGTAATGCCCGCCCACCCGCAAGCCCACTCGTTTC
13148552 GTCGGTTGGCTTAG
705 GTCGGTTGGCTTAG
* * *
13148566 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAAGGTTG
13148614 TGGCAACAGG
Statistics
Matches: 688, Mismatches: 67, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
717 1 0.00
718 141 0.20
719 8 0.01
720 14 0.02
721 502 0.73
722 22 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAAGGTTGCAGCAGCACATGCTAGG
CTCGAGCATGTGCTGGTGCCGCATTGTTCTTCGTCGGGGCACCATCATCGGAGCACCATCGGAAA
ACATGACCGGCGGCATTAGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAGCAGTAGCAATTAAAGTGTTCGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTA
CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGACAAAAACTCAATTTGAAAAAAT
TTTAAAAAAATCCCAAACTATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTG
ACATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCAC
ATCCCATCTCTCTGGCCAGCGTAATGCCCGCCCACCCGCAAGCCCACTCGTTTCGTCGGTTGGCT
TAG
Found at i:13148753 original size:26 final size:26
Alignment explanation
Indices: 13148724--13148776 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13148714 GTTGACTTAG
13148724 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13148750 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13148776 G
1 G
13148777 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13150152 original size:899 final size:892
Alignment explanation
Indices: 13147845--13151254 Score: 4404
Period size: 899 Copynumber: 3.8 Consensus size: 892
13147835 GTTGGCTTAG
* * * * * * *
13147845 GCATACGAAGTTTATTCCCAGTCTAAGAGTGGATCAGACTGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
13147910 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCA--CCATCGGA
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGC-TCGGA
* *
13147973 GAACCTGACCGGTGGCATTAGGGTTCC-AGCGATCGAGGGGGCCGGGGGGGTTGTGCGCACATGA
129 GAACCTGACCGGCGGCATTAGGGTTCCGA-CGATCGAGGGGGCCGGGGGGGTTGTGCACACATGA
* * *
13148037 TGTGCGATTGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
13148102 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAG-CAGTAGCCGTTAAAGTGTCT
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCT
*
13148166 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTT
322 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
* * *
13148231 TTTTGTGCATGCCAACAAAAATAAAAGTATCACGTCTACCAAGTTTTGGGGCAAAAACTCCTTTC
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTTC
* * * * *
13148296 GAAAAAATTTGAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGT
450 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * *
13148361 CATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCGTAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** * * * *
13148426 ATGGTATTGGCACACAAAAATATGAAGGTGTGCCTAAAGCTACCTACCACCCTATCGATCCATGG
580 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
* * * *
13148491 CTTGCACATCCTGTCTCTCTGGCCAGCGTAGTGCCCGCCCCCCCGCAAGCCCGCTCGTTTCGTCG
645 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-----CC-C--GCCCGCTCATTTCGTCG
* * ** *
13148556 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAAC
702 GTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGC
* *
13148621 AGGAT-AGGCAGCATGTAGAGGGGGACCCGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
767 AGGATCA-GCAGCATGCAGAGGGGGACCCGATGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
13148685 AGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TAGGCATAC--AGTTCATTCCCAGTCTAA
* * * * *
13148750 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAAGGCTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** *
13148815 CTCTGGCATGTGCTGGTG-TCGCATTTTTCTTTGCCGAGGCATAATCGTCGGAGCATCG-TCGGA
65 CTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGCTCGGA
* * * * * **
13148878 GAACCTGACCGACGGCATTAGGGTTCTGGCGATCGGGGGGGCCGGAGGGG-TGTGCACACAACAT
129 GAACCTGACCGGCGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGGTTGTGCACACATGAT
*
13148942 GTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
13149007 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
13149072 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * *
13149137 TGTGCATGCCAACAAAAATACAAAAATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * **
13149202 AAATTTTAAAAAATCCCGAGCCATAGAAAA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
454 AAATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
13149266 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13149331 GCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * * *
13149396 GCGCATCCCATCTCTCTGGCCGGCGTAGTACCCGCCCGTCCATCTGCTTATTTCGTCAGTTGGCT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC--C-GCTCATTTCGTCGGTTGGCT
* * * *
13149461 TAGGCATACGGAATTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCAGTAGTAGGATCA
709 TAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCA
* * * *
13149526 GCAGCACGCAGATGAGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
774 GCAGCATGCAGAGGGGGACCCGAT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
13149591 CACCCGCACGCTCATTTCGTGGGTTGACATAGGCATACAAAGTTCATTCCCAGTCTAA
838 CGCCCGCACGCTCGTTTCGTGGGTTGAC-TAGGCATAC--AGTTCATTCCCAGTCTAA
* * * * *
13149649 GCGTACGGAGTTCATTCCCAGTCTAAGATTCGACCGGACCGAGGGTTGTGGTAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
13149714 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGCT-GAAG
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGCTCGGAG
* * * * * *
13149778 AATCTGACTGGCGGTATT-GGGATTCCGACGATCGATGGGGTC-GGGGCG-TGTGCACACATGAT
130 AACCTGACCGGCGGCATTAGGG-TTCCGACGATCGAGGGGGCCGGGGGGGTTGTGCACACATGAT
* * * *
13149840 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTTAATAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
13149905 CAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
13149970 AATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTTGACTTTTTCGCTGAATGTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
* * * *
13150035 TTGTGCATGGCAACAAAAATACAAGGATCATGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * *
13150100 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
13150165 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13150230 GCATTGGC--GCATAGAAATATGAAGATGTACCTAGACCCACATACCACCCTATCGATCCATGGC
583 GCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
* * * *
13150293 TTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCTGCCCGTTCATTTCGTCGGTTAGCTTA
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
* * * ** * * * * *
13150358 GGCAAAC-AAAGTTCATTCCCGGTCTAAGATTGGACGGGACCGATGGCTGCAGCAGCAGGATCGG
711 GGCATACGGAA-TTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCAG
* * * *
13150422 CAGCATGCAGAGGGGGACCCGGTTGATCCCCGACTTACGCATCCTGCCCCTCTGGCCGGCTGAGC
775 CAGCATGCAGAGGGGGACCC-GATGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
13150487 GCCCGCACACTCGTTTTGTGGGTTGACT-----T---G----------G-----
839 GCCCGCACGCTCGTTTCGTGGGTTGACTAGGCATACAGTTCATTCCCAGTCTAA
* * *
13150518 GCATACGGAGTTCATTCCCAGTCTATGATCAGACCAGACTGAGGGTTGCGGCAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
13150583 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATTGCCTGAGCAAT-ATCGGAG
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGCTCGGAG
* * * *
13150647 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAAGGGG-CGGGGGGGTTATGCGCACATGATG
130 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGGTTGTGCACACATGATG
* *
13150711 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CTGAGAACT
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACT
* * * *
13150775 CATAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTAA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * *
13150840 AATGGAAACACTTTTTTCACATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGAATTTTA
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-
* *
13150905 TTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* ** *
13150970 AAAATTTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGT-GT
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
13151034 CTTGCCATTAAAGTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13151099 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATTCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * * * * * *
13151164 GCGCATCCTGTCTCTCTAGCCGACGTAGTGCCTGCCCACGCGCTCGTTTCGTCGGTTGGCTTAGG
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
*
13151229 CATACGGAGTTCATTCCCAGTCTAAG
713 CATACGGAATTCATTCCCAGTCTAAG
13151255 CATACGGAGT
Statistics
Matches: 2197, Mismatches: 275, Indels: 102
0.85 0.11 0.04
Matches are distributed among these distances:
868 4 0.00
869 339 0.15
870 301 0.14
871 2 0.00
874 1 0.00
884 1 0.00
889 1 0.00
894 4 0.00
895 144 0.07
896 4 0.00
897 5 0.00
898 293 0.13
899 491 0.22
900 5 0.00
902 218 0.10
903 47 0.02
904 194 0.09
905 143 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGCTCGGAGA
ACCTGACCGGCGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGGTTGTGCACACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
ACGGAATTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCAGCAGCAT
GCAGAGGGGGACCCGATGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTAGGCATACAGTTCATTCCCAGTCTAA
Found at i:13151264 original size:26 final size:26
Alignment explanation
Indices: 13151228--13151280 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13151218 GTTGGCTTAG
13151228 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13151254 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13151280 G
1 G
13151281 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13153239 original size:26 final size:26
Alignment explanation
Indices: 13153187--13153239 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13153177 GTTGACTTAG
* *
13153187 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
13153213 GCATACGGAGTTCATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAATATAA
13153239 G
1 G
13153240 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:13154362 original size:26 final size:26
Alignment explanation
Indices: 13154322--13154374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13154312 GTTGACTTAG
* *
13154322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
13154348 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
13154374 G
1 G
13154375 ATCGACCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:13155985 original size:26 final size:26
Alignment explanation
Indices: 13155948--13156000 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13155938 GTTGAATTAG
13155948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13155974 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13156000 G
1 G
13156001 ATCGAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13156569 original size:26 final size:26
Alignment explanation
Indices: 13156533--13156585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13156523 GTTGACTTAG
13156533 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
13156559 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13156585 G
1 G
13156586 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13157459 original size:26 final size:26
Alignment explanation
Indices: 13157429--13157481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13157419 GTTGACTTAG
*
13157429 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13157455 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13157481 G
1 G
13157482 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13158128 original size:897 final size:900
Alignment explanation
Indices: 13156406--13158203 Score: 2698
Period size: 897 Copynumber: 2.0 Consensus size: 900
13156396 CTAAGATCAT
* * * * *
13156406 ATCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCATGCAGAGGGGGGCTCTGTTGATCCCCGGC
1 ATCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCACGCAGAGGGGGACTCTGTCGATCCCCGAC
* * * *
13156471 TTGCGCATCCGGCCCCTCTGGCCGGTTGAGCCCTCGTACGCTCATTTCGTGGGTTGACTTAGGCA
66 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCTCGCACGCTCATTTCATGGGTTGACTTAGGCA
*
13156536 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCCGTCTAAGATCAGACCAGACCGA
131 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** *
13156601 GGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGAGGCAC
196 GGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCTCATTTTTCTTCATCGAGGCAC
* * *
13156666 CATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGCCATTGGGGTTCCGACGATAGGAAGGCTTG
261 CATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGCCATTGGGGTTCCGACGATAGGAAGGCTCG
* ** *
13156731 GGGGGGTGTACGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCG
326 GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAACTATCC
**
13156796 CTCATCAAATGTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
391 CTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
* **
13156861 GTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTC
456 GTAGCCATTAAAGTCTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTAAACTTC
* *
13156926 GAGTTTTTAGCAAAATTGTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
521 AAGTTTTTAGCAAAATTGTTTGGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * **
13156991 GCGCCACAACGCCTTTCGAAAAAATTTTAAAAAATCTCAAACCGTAAAGAGTTTTGAAAATCGTG
586 GCGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* * *
13157056 AAAAATAAAAAAGGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
651 AAAAATAAAAAACGAGTCATCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGA
** * * *
13157121 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
716 ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAACATGAAGAGGTGCCTAAACCCACCTACC
* *
13157186 ACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG-C-CCGCCCG-
781 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGC
* *
13157248 C-TCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
846 CGTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
** * *
13157302 ATCAGACCGAGGGTTGTGGCAGCAGGATCGGAAGCACGTAGAGGGGGACTC-GATCGATCCTCGA
1 ATCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCACGCAGAGGGGGACTCTG-TCGATCCCCGA
* * **
13157366 CTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCT-GCACGTTTGTTTCATGGGTTGACTTAGG
65 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-CCTCGCACGCTCATTTCATGGGTTGACTTAGG
* * * * *
13157430 CATACGGCGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
129 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * *
13157495 GAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG-CTGGATTTTTCTTCGTCGGGG
194 GAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCT-CATTTTTCTTCATCGAGG
* * *
13157559 CACCGTCGTCGAAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGAGG
258 CACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGCCATTGGGGTTCCGACGAT-AGGAAGG
*
13157624 C-CGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAAC
322 CTCGGGGGGG-TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAAC
*
13157688 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
386 TATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
13157753 TACTAGTAGCCATTAAAGTCTCTCA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTA
451 TACCAGTAGCCATTAAAGTCTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTA
** * * *
13157817 AACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAATAAAAATACAAGGATCACGTCTACCA
515 AACTTCAAGTTTTTAGCAAAATTGTTTGGTACATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * *
13157882 AGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAA
580 AGTTTGGCGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAA
* *
13157947 ATCGTGAAAAATAGAAAACGAGTCATCTTG-CAATGAAACTTCTCGTGAAGGCTTAAGGGACAAT
645 ATCGTGAAAAATAAAAAACGAGTCATCTTGAC-ATGAAACTTCACGTGAAGGCTTAAGGGACAAT
13158011 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAACATGAAGAGGTGCCTAAACCC
709 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAACATGAAGAGGTGCCTAAACCC
*
13158076 ACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
774 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG
*
13158141 TCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
838 -CCGCCCG-CCG-TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
13158204 CAGACTGGAC
Statistics
Matches: 806, Mismatches: 81, Indels: 21
0.89 0.09 0.02
Matches are distributed among these distances:
895 3 0.00
896 280 0.35
897 466 0.58
898 1 0.00
899 1 0.00
901 7 0.01
903 1 0.00
905 47 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (900 bp):
ATCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCACGCAGAGGGGGACTCTGTCGATCCCCGAC
TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCTCGCACGCTCATTTCATGGGTTGACTTAGGCA
TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCTCATTTTTCTTCATCGAGGCAC
CATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGCCATTGGGGTTCCGACGATAGGAAGGCTCG
GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAACTATCC
CTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
GTAGCCATTAAAGTCTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTAAACTTC
AAGTTTTTAGCAAAATTGTTTGGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GCGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
AAAAATAAAAAACGAGTCATCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAACATGAAGAGGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGC
CGTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
Found at i:13158990 original size:25 final size:24
Alignment explanation
Indices: 13158962--13159009 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
13158952 AGCAATACGG
*
13158962 AGTTCATTCCCAGTCTAAGCATCAA
1 AGTTCATTCCAAGTCTAAG-ATCAA
13158987 AGTTCATTCCAAGTCTAAGATCA
1 AGTTCATTCCAAGTCTAAGATCA
13159010 GACCAGACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (24 bp):
AGTTCATTCCAAGTCTAAGATCAA
Found at i:13160342 original size:718 final size:703
Alignment explanation
Indices: 13159147--13160451 Score: 1943
Period size: 718 Copynumber: 1.8 Consensus size: 703
13159137 GATCGGGGCA
* * **
13159147 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTAGCCTTCTATCCCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATCAGCCCCCTATCCCTCATCAAACCT
* *
13159212 CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAA
66 CGAGAACTCACACCCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAATAAA
* *
13159277 GTTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCA
131 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCA
* * * *
13159342 GACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTC
196 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTC
* * * *
13159407 TTTCTGAAAAAATTTTACAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAA
261 ATTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
*
13159472 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCA
326 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* **
13159537 TAAAAATGGCATTGGCACGTAGAAATATGAAGATTTGCCTAAACCCACCCACCACCCTATCGATC
391 TAAAAATGGCATTGGCACATAGAAATATGAAGAGATGCCTAAACCCACCCACCACCCTATCGATC
*
13159602 CACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCACGCCCT-CCCGCCCGCTCGTTTCAT
456 CACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCACG-CCTGCCCGCCCGCTCGTTTCAT
* * * * * * *
13159666 CAGTTGGCTTAGGTATACGAAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCA
520 CAGTTGGCTTAGGCATACGAAGCTCATTCCCAGTATAAAAGTGAACCAAACCAAGGGTTGCGGCA
13159731 GCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAG
585 GCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAG
13159796 AACATGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGTG
650 AACATGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGTG
* *
13159850 CACATGATGTGCGTATGGG-GCTGGTACTTGGCCCTTATATCGGCCCCCCTATCCTTTCATCCAG
1 CACATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATCAG-CCCCCTATCC-CTCAT-CA-
* * * *
13159914 AACCTTTGAGAACTCACACCGCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCCTGCCAGTAG
61 AACC-TCGAGAACTCACACC-CACTTAAAAAGCATTTGAGATTTTACAGGTTTG-CTGCCAATAG
*
13159979 CCAATAGAAG-GTCTGAAATTGGGACCACTTTTTTCAAATGGGTCACAAAATCTTGTACACTTTG
123 CCAATA-AAGTGTCTGAAATGGGGA-CACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTTG
* *
13160043 AGTTTTTAGTCTGAATGTTTTTTG-GCATGCCAAAAAAAAATACAAGGATCAATGTCTACCAAAG
185 AGTTTTTAG-CAGAAT-TTTTTTGTGCATGCC-AAAAAAAATACAAGGATC-ACGTCTACC-AAG
* *
13160107 TTTGGGGACAAAACTTCATTCCGAAGAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAA
245 TTTGGGGACAAAAC-TCATTCCGAA-AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
**
13160172 ATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
308 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
13160237 GTATGAATTTACAAGCCATAAAACTGGCATTGGCATATAGAAATATGAAGAGATGCCTAAACCCA
373 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAGATGCCTAAACCCA
* * * *
13160302 CCTACCACCTTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGC
438 CCCACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCACGCCTGC
* * * *
13160367 CTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTATAAAAGTGAATCA
503 CCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGAAGCTCATTCCCAGTATAAAAGTGAACCA
*
13160432 GACCAAGGGTTGCGGCAGCA
568 AACCAAGGGTTGCGGCAGCA
13160452 GGATCGCTAG
Statistics
Matches: 531, Mismatches: 52, Indels: 23
0.88 0.09 0.04
Matches are distributed among these distances:
703 34 0.06
704 13 0.02
705 4 0.01
706 2 0.00
707 4 0.01
708 14 0.03
709 30 0.06
710 25 0.05
711 17 0.03
712 33 0.06
713 11 0.02
714 24 0.05
715 7 0.01
716 16 0.03
717 11 0.02
718 286 0.54
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (703 bp):
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATCAGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAATAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCA
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTC
ATTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACATAGAAATATGAAGAGATGCCTAAACCCACCCACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCACGCCTGCCCGCCCGCTCGTTTCATC
AGTTGGCTTAGGCATACGAAGCTCATTCCCAGTATAAAAGTGAACCAAACCAAGGGTTGCGGCAG
CACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGA
ACATGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGTG
Found at i:13161498 original size:26 final size:26
Alignment explanation
Indices: 13161461--13161511 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13161451 GTTGACTTAG
*
13161461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13161487 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
13161512 TGACTGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13161773 original size:907 final size:900
Alignment explanation
Indices: 13159686--13161898 Score: 2853
Period size: 907 Copynumber: 2.4 Consensus size: 900
13159676 AGGTATACGA
** ** * * * *
13159686 AGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAACACATG-TGGGCTCGGGCA
* ** * *
13159751 TGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCAT---C---G---C--CGGAGAACATGACC
65 TGTGCTAGTGCCGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACC
* *
13159805 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGTATGGG-
130 GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTGCG-ATGGGT
* * *
13159869 GCTGGTACTTGGCCCTTATATCGGCCCCCCTATCCTTTCATCCAGAACCTTTGAGAACTCACACC
193 GCTGGTACTTGGCCCTTATATTGG-CCCCCTATCC-CTCAT-CA-AACC-TCGAGAACTCACACC
**
13159934 GCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCCTGCCAGTAGCCAA-TAGAAG-GTCTGAAA
253 -CCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAG-CAATTA-AAGTGTCTGAAA
*
13159997 TTGGGACCACTTTTTTCAAATGGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTCTGAATGTT
314 TGGGGA-CACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTTGAGTTTTTAG-CTGAAT-TT
* * *
13160062 TTTTG-GCATGCCAAAAAAAAATACAAGGATCAATGTCTACCAAAGTTTGGGGACAAAACTTCAT
375 TTTTGTGCATGCC-AACAAAAATACAAGGATC-ATATCTACCAAAGTTTGGGCACAAAACTTCAT
* *
13160126 TCCGAAGAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
438 TCCGAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
* **
13160191 GAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
503 GAGTCGTCTTGAAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
13160256 AAAACTGGCATTGGCATATAGAAATATGAAGAGATGCCTAAACCCACCTACCACCTTATTGATCC
568 AAAAATGGCATTGGCATACAGAAATATGAAGAGATGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
13160321 ACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCTGCCCGCTCGTTTCATCG
633 ACAGCTTGCGCATCCCGTCTCTCTGGCCGACATAGCGCCCGCCTGCCCGCCCGCTCGTTTCATAG
* *
13160386 GTTGGCTTAGGCATACGGAGCTCATTCCCAGTATAAAAGTGAATCAGACCAAGGGTTGCGGCAGC
698 GTTGGCTTAGGCATACGAAGCTCATTCCCAGTATAAAAGTGAACCAGACCAAGGGTTGCGGCAGC
* * * *** *
13160451 AGGATCGCTAGCACGCAGAGGGGGACTCGGCTGATCCCCGACATGCGCATCGTGCCCTTCTGGCC
763 AAGATCGCTAGCACGCAGAGAGGGACCCGGCTGATCCCCGACATGCGCATCCCACCCCTCTGGCC
* * * * *
13160516 AGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTTATCATACGAAGTTCATTCCCAGTTTAA
828 AGCTGAGCGACCGCACGCTCGTTTCGTAGGTTGACTTTAGCATACGAAGTTCATTCCCAGTCTAA
13160581 GCATACAG
893 GCATACAG
* * * * **
13160589 AGTTCATTCCCAGTCTAAGATCAGACCGGGCCGAGGGTTGCGGCAGCACATGTGGGCTCGGGTGT
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAACACATGTGGGCTCGGGCAT
* * ** * *
13160654 GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTAACCG
66 GTGCTAGTGCCGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCG
* *
13160719 ACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGC
131 ACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGATGGGTGC
* *
13160784 TGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
13160849 AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTATGGAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
* * * *
13160914 TTTTCAAATGGTCACTAAATCTTTTTCACTTTGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
13160979 CAAAAATACAAGGATC-TCATCTACC-AAGTTT-GGCACCACAAC-TCCTTCC-AAAAAAATTTT
390 CAAAAATACAAGGATCAT-ATCTACCAAAGTTTGGGCA-CAAAACTTCATTCCGAAAAAAATTTT
* *
13161039 ATAAAAT-CTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGAAA
453 AAAAAATCCT-GAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGAAA
13161103 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
13161168 CATGCAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCTACAGCTTGCGCAT
582 CATACAGAAATATGAAGA-GATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
* *
13161232 CCCGTCTCTCTGGCCGGCATCATGCCCGCCCGCCTGTCCACCCGCCCGCTCG-TTCGGTAGGTTG
646 CCCGTCTCTCTGGCCGACAT-A-G--CGCCCGCCTG----CCCGCCCGCTCGTTTC-ATAGGTTG
* * * ** * * * *
13161296 GCTTAGGCATACGAAGTTCCTTCCCAGTGTAGGA-TTAGACCAGACCGAGGGTTGTGGTAGCAAG
702 GCTTAGGCATACGAAGCTCATTCCCAGTATAAAAGTGA-ACCAGACCAAGGGTTGCGGCAGCAAG
* * * *
13161360 ATCGGTAGCACGCAGAGAGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGTC-GA
766 ATCGCTAGCACGCAGAGAGGGACCCGGCTGATCCCCGACATGCGCATCCCACCCCTCTGGCCAG-
* *
13161424 CTGAGCGACCGCACGCTCGTTTTGTAGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAG
830 CTGAGCGACCGCACGCTCGTTTCGTAGGTTGACTTTA-GCATACGAAGTTCATTCCCAGTCTAAG
13161488 CATAC-G
894 CATACAG
* * *
13161494 AAGTTCATTCCCAGTCTATGA-CTGGACCGGACCAAGGGTTACGGCAACACCTGCTGGGCTCGGG
1 -AGTTCATTCCCAGTCTAAGATC-AGACCGGACCAAGGGTTACGGCAACACATG-TGGGCTCGGG
** * *
13161558 CATGTGCTAGTGCCGCATTTTTCTTCGTCAGGGCACTATCACCGGAGCATCGTCGGAGAGCCTGA
63 CATGTGCTAGTGCCGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGA
13161623 CCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGG
128 CCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGG
* *
13161688 TGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCT
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
13161753 TAAAGAGCCTTTGCGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACC
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
*
13161818 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
13161883 CAACAAAAATACAAGG
387 CAACAAAAATACAAGG
13161899 TCTAAGATCC
Statistics
Matches: 1150, Mismatches: 124, Indels: 68
0.86 0.09 0.05
Matches are distributed among these distances:
897 2 0.00
898 202 0.18
899 11 0.01
900 13 0.01
901 6 0.01
902 76 0.07
903 60 0.05
904 30 0.03
905 32 0.03
906 242 0.21
907 342 0.30
908 21 0.02
909 4 0.00
910 2 0.00
911 5 0.00
912 23 0.02
913 79 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAACACATGTGGGCTCGGGCAT
GTGCTAGTGCCGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCATATCTACCAAAGTTTGGGCACAAAACTTCATTCCGAAAAAAATTTTAAA
AAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGAAATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
CAGAAATATGAAGAGATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
CTCTCTGGCCGACATAGCGCCCGCCTGCCCGCCCGCTCGTTTCATAGGTTGGCTTAGGCATACGA
AGCTCATTCCCAGTATAAAAGTGAACCAGACCAAGGGTTGCGGCAGCAAGATCGCTAGCACGCAG
AGAGGGACCCGGCTGATCCCCGACATGCGCATCCCACCCCTCTGGCCAGCTGAGCGACCGCACGC
TCGTTTCGTAGGTTGACTTTAGCATACGAAGTTCATTCCCAGTCTAAGCATACAG
Found at i:13162886 original size:26 final size:26
Alignment explanation
Indices: 13162856--13162908 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13162846 GTTGACTTAG
13162856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13162882 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13162908 G
1 G
13162909 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13163797 original size:26 final size:26
Alignment explanation
Indices: 13163758--13163813 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
13163748 TGGGTTGACT
* * *
13163758 TAAGGATACGGAGTTCTTTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
13163784 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
13163810 TAAG
1 TAAG
13163814 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:13164018 original size:905 final size:901
Alignment explanation
Indices: 13162035--13164554 Score: 3621
Period size: 905 Copynumber: 2.8 Consensus size: 901
13162025 GGGTTGTGAC
** * * * * *
13162035 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTTCATCGAGGCACCATCGCCGAA
1 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGGATTTTTCTTCGTCGGGGCACCGTCACCGGA
*
13162100 GCATCACCGGAGAACCTGACTGGCGGCATTGGGGTT-C-CGA-C--GA--TCGGGGGGG-TGTGC
66 GCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCACGATCGGGAGGTCGGGGGGGTTGTGC
* * **
13162157 GCACATGATGTGCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATG
131 GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACC
* * *
13162222 TCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAA
196 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAA
13162287 AGTGTCTA-G-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCGAGTTTTTA
261 A--GTCTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCGAGTTTTTA
* * * *
13162350 GCAGAA-TTTTTTGCTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGCACCACA
324 GCTGAATTTTTTTG-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAA
** *
13162414 ACTCCTTTCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAA
387 ACTCCTTTCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAA
* * *
13162479 AAAA-GCAGTCATCTTGCCATTAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACA
452 AAAACG-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
13162543 AGCCATAAAAATGTCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
516 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
13162608 CGATCCACGGCTTGCGCATCCCGTCTCTCTGACTGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCC
581 CGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCG--C-CC--CCCGCC
* * * *
13162673 CGCTCGTTTGGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAGATCA
641 CGCTCGTTTGGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGATCAGACCG
* *
13162738 AGGGTTG-TGACAGCAGGATCAGAAGCACGTAGAGGAGGACTCGATCGATCCTTGGCTTACGCAT
706 AGGGTTGCAG-CAGCAGGATCAGAAGCACGTAGAGGAGGACTCGATCGATCCTCGGCTTACGCAT
*
13162802 CCTGCCCTTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
770 CCCGCCCTTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
** **
13162867 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
835 TCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACAGTTGCG
13162932 GT
900 GT
*
13162934 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGGATTTTTCTTCGTCGGGGCACCGTCACCAGA
1 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGGATTTTTCTTCGTCGGGGCACCGTCACCGGA
* * * *
13162999 GCATCGCTGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCAGGGAGGTCGGGGTGGTTGT
66 GCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCC-ACGATC-GGGAGGTCGGGGGGGTTGT
*
13163064 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCTTATCCCTCATCAAA
129 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAA
*
13163129 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGCTTTGCTACCAGTAGCCATT
194 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATT
** *
13163194 AAAGTCTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTAAACTTTGAGTTTTTA
259 AAAGTCTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCGAGTTTTTA
* * * *
13163259 GCTGAATTTTTTTGTACCTGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCGAAAA
324 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAA
* * ** ** *
13163324 CTCCTTTCGAAAAATTTTTAAAAAATCTCAAACTTTAAAAAGTTTCAAAAATTGTGAAAAATAAA
388 CTCCTTTCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAA
* * *
13163389 AAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGGCAATTGTATGAATTTACAAG
453 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * * *
13163454 CCATAAAAATGGCATTGGCACATAAAAACATGAAGAGGTGCCTAAACCCACCTACCACCCTATCG
518 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
13163519 ATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGAGCCCGCCCGCCCACCCACCCGCTCG
583 ATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCC-CCCGCCCGCTCG
* * *
13163584 TTTGGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTT
647 TTTGGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTT
* *
13163649 GCAGGAGCAGGATCAGAAGCACGTAGAGGGGGACTCGATCGATCCTCGGCTTACGCATCCCGCCC
712 GCAGCAGCAGGATCAGAAGCACGTAGAGGAGGACTCGATCGATCCTCGGCTTACGCATCCCGCCC
* * * * *
13163714 TTCTGGCC-AGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAAGG-ATACGGAGTTCTTT
777 TTCTGGCCGA-CTGAGCACCCGCACGCTCATTTCATGGGTTGACTT-AGGCATACGGAGTTCATT
*
13163777 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGACAGTTGCGGT
840 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACAGTTGCGGT
* * ** *
13163839 AGCACATGTTGGGGTTGGGCATGTGTTGGTGCCGGATTTTTCTTCGTCGGGGCACCGTCACCGGA
1 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGGATTTTTCTTCGTCGGGGCACCGTCACCGGA
* * * *
13163904 GCATTGCCGGAGAACCTAACTGACGGCATTGGGGTTCCTACGATCGGAGAGGCCGGGGGGGTTGT
66 GCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCC-ACGATCGG-GAGGTCGGGGGGGTTGT
* *
13163969 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGTCCCCTATCCCTCATCAAA
129 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAA
* * *
13164034 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATT
194 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATT
* * *
13164099 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-TTTGTTCACTGCGAGTTTTT
259 AAAGTCTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTT-TTCACTTCGAGTTTTT
* * * *
13164163 AGCTGAATTTTTTTATGCAAGGCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAA
323 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAA
* * *
13164228 ACTCCTTTCGAAAAAATTTAAAAAAATCTTGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAG
387 ACTCCTTTCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAA
13164293 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
452 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
13164358 GCC----AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
517 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
13164419 GATCCACGGCTTGCGTATCCCATCTCTCTGGCTGACGTAGTGCCCGCCCG---CTCGCCCGCTCG
582 GATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCCCCGCCCGCTCG
* * * * *
13164481 TTTCGTCGGTTGGCTTAGGCATAC-ATAGTTCATTCCTAGTCTAAGATTAGACCGGACCGATGGT
647 TTTGGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGT
*
13164545 TGCAGTAGCA
711 TGCAGCAGCA
13164555 CATGCTTGGC
Statistics
Matches: 1445, Mismatches: 155, Indels: 44
0.88 0.09 0.03
Matches are distributed among these distances:
897 74 0.05
899 89 0.06
900 1 0.00
901 97 0.07
902 3 0.00
903 1 0.00
904 6 0.00
905 702 0.49
906 8 0.01
907 6 0.00
908 9 0.01
909 439 0.30
910 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (901 bp):
AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGGATTTTTCTTCGTCGGGGCACCGTCACCGGA
GCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCACGATCGGGAGGTCGGGGGGGTTGTGC
GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACC
TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAA
AGTCTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTC
CTTTCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCCCCGCCCGCTCGTTTG
GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCAG
CAGCAGGATCAGAAGCACGTAGAGGAGGACTCGATCGATCCTCGGCTTACGCATCCCGCCCTTCT
GGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACAGTTGCGGT
Found at i:13167120 original size:26 final size:26
Alignment explanation
Indices: 13167090--13167140 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13167080 GTTGACTTAG
*
13167090 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
*
13167116 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAACTTCATTCCCAGTCTA
13167141 GGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:13168620 original size:4 final size:4
Alignment explanation
Indices: 13168611--13168636 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
13168601 CCGACGTAGT
13168611 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
13168637 TTGTTTCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:13171468 original size:905 final size:902
Alignment explanation
Indices: 13168799--13175847 Score: 8739
Period size: 903 Copynumber: 7.8 Consensus size: 902
13168789 AGGCATACGG
*
13168799 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCAGAT-AGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
* * * * *
13168864 TGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATGGCCAG-AGAACCTGAC
65 TGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCG-TAGAAGAACCTGAC
* ** *
13168928 CTGCGGCATTGGGGTTTTGGC-ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGG
129 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
13168991 CGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
13169056 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
13169121 CTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGC
* * *
13169186 CAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* * *
13169251 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGA
454 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
13169316 AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * * *
13169381 GGAGAAATAAGATGCTGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGCGCATCCCA
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
13169446 TCTCTTTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCGCTTGTTTCGTCGGTTGGGTTAGGCA
649 TCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
13169511 TACGAAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATTGGCAGGA
713 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * * * *
13169576 CGCAGAAGGGGTCCCGATCGATCCCCGGCTTGCGCATCCCGCACCTCTGGCCAGTTGAGCGCCCG
778 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
* * * *
13169641 TACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATA-TGA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACT-A
** * * ** *
13169701 AGTTCATTCTTAGTCTAAGATCAGACTAAACCGAGGGTTTCCACAGCACATACTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCAGA-TAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
* ** * * ***
13169766 TGTGCTGGTGCTGCATTTTTCTTTGCCGAGGCACCACCGTCAGAGCATCACCGAAGAACCTGACC
65 TGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTAGAAGAACCTGACC
* * * * * *
13169831 GACGGCATTGGGGTTCCGGCGATCGGTGGGGTCGAGGGGCGTGTGCACACATGATGTGCAATGGG
130 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGG
*
13169896 TGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
13169961 TAAAGAGCATTTAAGATTTTACAGGTTTGCAGCCAGTAGTCGTTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
13170026 C-TTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTTGCTGAATTTTTTTGTGCATG
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTTGCTGAATTTTTTTGTGCATG
*
13170089 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCC-AAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* **
13170153 AAAAATCCCGAACCGCAGAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
453 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
13170218 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGTATTTGCAAGCTATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
13170283 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGTATCCC
583 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
13170348 ATCTCTCTGGCCGGCATAGTGCCCGCCCGCTCGCCCGCCTGCTTGTTTCGTGGGTTGGCTTAGGC
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
13170413 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGC
712 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
** * * * * *
13170478 ACATAGAGAGGGACCCG-GCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGTC
777 ACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCC
13170542 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTA
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTA
* * * * *
13170604 AGTTCATTCCCATTCTAAAATCAGACTGGACCGAGGGTTACGGCAGCACATTCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGA-TAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
* * *
13170669 TGTGTTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCTAGAAG-ACTTGAC
65 TGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCG-TAGAAGAACCTGAC
* * * *
13170733 CGACGGCATTGGGGTTCTGGTGATCGGGGGGGCCGAGGGGGGTGTGCGCAAATGATGTGCGATGG
129 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGG
*
13170798 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
13170863 ATAAAGAGCATATGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
13170928 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATG
* ** *
13170993 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTGA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * * * * *
13171058 AAAAATCTCGAACCACAAAAAGTTTCGAAAATCATCAAAAATAGAAACCGAGTTGTCTTGCCATG
453 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
13171123 GAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
13171188 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACAGCTTGCGTATCCT
583 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
13171253 GTCTCTCTGGCCGGCATAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGC
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
13171318 ATACGAAGTTCATTCCCAGTCTAAGATTGGGCCAAACCGAGGGTTGCGGTAGCAGGATCGGCAGC
712 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* ** * ** * * *
13171383 ACGCAGAGGGAGACTAGGTCGATCCCTAGCTTGCGCATCCCATCCTTCTGGCCGACTGAGCGCCC
777 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* * * **
13171448 GCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTTAGCATACGG
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTA
** ** * * * * *
13171509 AGTTCATTCAAAGTCTAAGATTGGATCGGATCAAGGGTTAAGGTAGCACATGCTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCAGAT-AGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
* * * *
13171574 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCAG-AGAACCTAAC
65 TGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGT-AGAAGAACCTGAC
* * * * * *
13171638 CGACAGCATTGGGGTTCCGACGATCAGGGGGGCC-AGGGGGTGTG-GCACATGATGTGCGAGGGG
129 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
13171701 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTTGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
13171766 TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAATGTCTGAAAT-GGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
13171830 GTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGC
* * * **
13171895 CAACAAAAATACAAGGATCACGTATACCATGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTTGC
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
** * * *
13171960 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAA
454 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
13172025 AATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
13172090 GCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACACCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *** * * *
13172155 TCTCTCTGGCCGGCGTACTG--CAAAC-CCGCCTGCCCGCTCATTTTGTCGGTTGGCTTAGGCAT
649 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * ** *
13172217 ACTG-AGTTCATTCCCAGTAC-AAGATCCGACCGGA-TGAGGGTTACGGCAGCAGGATAAGTAGC
714 AC-GAAGTTCATTCCCAGT-CTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * *
13172279 ACGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
777 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* * *
13172344 GCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGGATAC-A
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTA
* * * * * *
13172404 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGACGGTTACGACAACACATGCTGGGCTCGGGC
1 -AGTTCATTCCCAGTCTAAGATCAGA-TAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGC
* * ** * * *
13172469 ATGTGCTGGTGCCACATTTCTCTTCACCGAGGCACCATCCCCAGAGCATCGTCGGAGAACCTGAC
64 ATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTAGAAGAACCTGAC
*
13172534 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGG
129 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
13172599 TGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
13172664 TAAAGAGCACCTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCTGAAATTGGGAC
259 TAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
13172729 ACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTTTTCAAATGGTCACAAAAGCTTGTACACT
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACA-------C---T--T--------C--G---A--
13172794 TTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AGCGATCACGTCTACCAAGT
361 --G-TTTTTT-GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGT
* * * *
13172858 TT-GGGCCAAAACTCCTTTCGAAAAAA-TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATC
421 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
13172921 GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
486 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
13172986 TGAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
551 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
13173051 ACCACCATATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCTG
616 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-G
* * * * *
13173116 CCTGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACC
680 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
* * * * ** * ** *
13173181 AGACCAAGGGTTGCGGCAGTAGGATCGACAGCATACAGAGGGGGACCTGGCCGATCCCCGGTTTG
745 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* * * * * * * * * *
13173246 CACA-GCCGCCCCTCTGGTCGGTTGAGCGCCTGCATGCTCATTTCGTGTGTTGACTTTGGCATAC
810 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
13173310 GGAGTTCATTCCCAGTCTAA-CAT--T-
875 GGAGTTCATTCCCAGTCTAAGCATACTA
* *
13173334 -G--GA---CC-G----A-A-C---T-GA---A-GGTTACGGCAGCACATGCTGGGCTCGGGCAT
1 AGTTCATTCCCAGTCTAAGATCAGATAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCAT
* * ** * * *
13173378 GTGCTAGTGTCGCATTTTTCTTCGTC-AGGGCACCATTGTCGGAGCATCGTCGGAGAACCTGACC
66 GTGCTGGTGCCGCATTTTTCTTCACCGA-GGCACCATCGTCGGAGCATCGTAGAAGAACCTGACC
** * * *
13173442 GGTAGTATTGGGGTTTCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
130 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
13173507 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
13173572 AAAGAGCATTTGAGATTTTACAGGTTCGGTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
13173637 TTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATATTTTTT-TGCATGC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAAT-TTTTTTGTGCATGC
13173701 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
13173766 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
13173831 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* ** * *
13173896 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATTCTG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * * * * *
13173961 GCTCTCCAGTCGGCGTAGTGCTCACCCGTCCGCCCGCTCGCTCATTTTGTCGGTTGGCTTAGGCA
649 TCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * * *
13174026 TACGTAGTTCATTTCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGTAGCAGGATCAGCACCA
713 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
** * * * * *
13174091 CGTGGAGGAGGACCCGATCGATCCTCGACTTACGCAT-CCAGCCCCTCT-GCCAGACTGAGCGCC
778 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCA-CCCCTCTGGCC-GGCTGAGCGCC
* * **
13174154 TGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTA
* * * *
13174216 AGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGGTGGGCTC-GAGC
1 AGTTCATTCCCAGTCTAAGATCAGAT-AGACCGAGGGTTACGGCAGCACATGCTGGGCTCAG-GC
* ** *** *
13174280 ATGTCCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
64 ATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTAGAAGAACCTGAC
* * * * * *
13174344 CGGCTGG-ATTGAGGTTTCGGTGATC-GGGGGGCTGGGGGCGGTGAGCGCGCACATAGATATGCG
129 CGGC-GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GGT--GTGCGCACAT-GATGTGCG
* *
13174407 TATGGGTTGCTGCTTGCTTGG-CCTTATATTTGGCCCCCTATCCCCTTCATCAAACCTCGAGAAC
189 -ATGGG-TGCTG-GTACTTGGCCCTTATA-TTGGCCCCCTAT-CCC-TCATCAAACCTCGAGAAC
13174471 TCACACCCCC-TAAAGAGCATTTGAGATTTTACAGG-TTG-TGCCAGTAGCCATTAAAAGTGTCT
248 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCT
* * * *
13174533 GAAATGGGGACAC-TTTTTCAAATGGTCAC-AAATCTTGGTTACA-TTAGAGTTTTTAGC-AAAA
312 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-G-TACACTTCGAGTTTTTTGCTGAAT
* * ** *
13174594 GTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTATGAAGTTTGGGGCCAAAACTCCCT
375 TTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * *
13174659 CCGAAATAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAATATAGAAAACGA
439 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
13174724 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAA
504 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * *
13174789 AAATGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATTGATCCAC
569 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
13174854 GGCTTGCGCAT-CCGTCTCTCTGGCTGACGTAGTGACCGCCTGCCAGCCCGCCCGCTCGTTTCGT
634 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGT
* * * * * * * *
13174918 CGGTTGGCTTAGGTATATGTAGTTCATTCCTAGTCTAAGATTGGACC-GAGCTGAGGGTTACGAC
698 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGGTTGCG-G
* * * * *
13174982 T-GTAGGATCGACAGCACGCAGAGGGGGACCCAATCGATCCCCGACTTGCGCATCCCGCCCCTCT
761 TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCT
* * * * * * *
13175046 GGCCGGTTGAGCACCGGCACGCTCGTTTCATTGGTTGACATAGGTATACGGAGTTCATTCCCAG-
826 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
13175110 -T---C-TA-T-
891 CTAAGCATACTA
* * * *
13175115 -G---A-T--C-G----A-A-C---CAGACCGAGGGTTACAGCAGTACATGCTGGGCTCAGGCAC
1 AGTTCATTCCCAGTCTAAGATCAGATAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCAT
** * * * *
13175163 GTGCTGGTGCAACATTTTTCTTCATCGGGGCGCCA---TC---G--TCG--G-AGAACCTTACCG
66 GTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTAGAAGAACCTGACCG
* * *
13175217 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGCGGTGTGTGCGCATGATGTGCGATGGGTG
131 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
13175282 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
13175347 AAGAGCATTTGAGATTTTACAGGTTTGGTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
13175412 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTTAGCTGAATATTTTTGTGCATGCC
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTT-GCTGAATTTTTTTGTGCATGCC
* * * * *
13175476 AACAAAAATACAAGGATCGCATCTACGAACTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
*
13175541 AAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
13175606 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGCACA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
13175671 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
13175736 CTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCCTACTCGTTTCGTCGGTTGGCTTAG
650 CTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAG
* * *
13175801 GCATATGGAA-TTCATTCCCAGTCTAAGATTGCACCAGACCGAGGGTT
710 GCATA-CGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
13175848 ATGGCAGCAC
Statistics
Matches: 5349, Mismatches: 652, Indels: 323
0.85 0.10 0.05
Matches are distributed among these distances:
863 28 0.01
864 28 0.01
865 52 0.01
866 280 0.05
867 64 0.01
868 9 0.00
869 7 0.00
870 2 0.00
871 88 0.02
872 16 0.00
874 2 0.00
875 45 0.01
876 37 0.01
877 317 0.06
878 67 0.01
879 5 0.00
881 55 0.01
882 7 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 2 0.00
887 1 0.00
888 1 0.00
889 1 0.00
891 1 0.00
893 1 0.00
894 3 0.00
895 3 0.00
896 267 0.05
897 66 0.01
898 91 0.02
899 46 0.01
900 37 0.01
901 318 0.06
902 268 0.05
903 762 0.14
904 276 0.05
905 697 0.13
906 98 0.02
907 418 0.08
908 296 0.06
909 46 0.01
910 29 0.01
911 30 0.01
912 1 0.00
916 1 0.00
917 1 0.00
918 1 0.00
920 1 0.00
923 2 0.00
925 1 0.00
926 1 0.00
928 1 0.00
929 205 0.04
930 28 0.01
931 50 0.01
932 6 0.00
933 130 0.02
934 49 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
AGTTCATTCCCAGTCTAAGATCAGATAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCAT
GTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTAGAAGAACCTGACCG
GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTA
Done.