Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 69 of 131
Found at i:13171523 original size:26 final size:27
Alignment explanation
Indices: 13171470--13171524 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
13171460 CATGGGTTGA
* **
13171470 CTTAGGCATATGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATTCAAAGT
13171497 CTTA-GCATACGGAGTTCATTCAAAGT
1 CTTAGGCATACGGAGTTCATTCAAAGT
13171523 CT
1 CT
13171525 AAGATTGGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATTCAAAGT
Found at i:13172765 original size:31 final size:31
Alignment explanation
Indices: 13172727--13172795 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
13172717 TGAAATTGGG
* *
13172727 ACACTTTTTTCAAATGGTTACAAAATCTTGT
1 ACACTTTTTTCAAATGGTCACAAAAGCTTGT
13172758 ACACTTTTTTCAAATGGTCACAAAAGCTTGT
1 ACACTTTTTTCAAATGGTCACAAAAGCTTGT
13172789 ACACTTT
1 ACACTTT
13172796 GATTTTTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (31 bp):
ACACTTTTTTCAAATGGTCACAAAAGCTTGT
Found at i:13174218 original size:26 final size:26
Alignment explanation
Indices: 13174182--13174234 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13174172 GTTGACTTAG
13174182 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13174208 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13174234 G
1 G
13174235 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13177547 original size:26 final size:26
Alignment explanation
Indices: 13177511--13177563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13177501 GTTGACTTAG
*
13177511 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
13177537 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13177563 G
1 G
13177564 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13177896 original size:866 final size:870
Alignment explanation
Indices: 13175801--13181012 Score: 6163
Period size: 899 Copynumber: 5.9 Consensus size: 870
13175791 GTTGGCTTAG
* * * * *
13175801 GCATATGGAATTCATTCCCAGTCTAAGATTGCACCAGACCGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * ** * *** *
13175866 CTCGAGCATGTACAGGTGCTGCATTTTTCTTCGTCGGGGCAATAGCGTCGGAGCATGGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAGA
*
13175931 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACAATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCAC-ATGATGTG
* *
13175996 CGATAGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCT-AGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTCA
* * * *
13176060 AACCCCCTTAAAGATCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
13176125 TGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTT
* * * * ** *
13176190 TGTGCATGCCAACCAAAATACAAGGATCACGTCTACTAAGTTTGTTGCCAAAACTCCATT-CGAA
388 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCC-TTCCAAA
* * * *
13176254 AAAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
***
13176319 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATGTAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
13176384 GCATTGGCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GCATTGGCACACAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
13176449 TGCGTATCCCATCTCTCTGGCC-AGCGTAGT----GCCCGCCTGCCCGCTCGTTTCTTCGATTGG
646 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
13176509 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGCGACAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * **
13176574 CGACAGCACGTAGAGCGGGACCCGACC-ATTCCTCG-GC-TTGCGCATCCTGCCCCTCTGGCCGG
775 CGACAGCACGTAGAGGGGGACCCGACCGA-TCCCCGAGCATGGCG-A-CC-GCTCCTTTCGTGGG
* **** ** * * * *
13176636 CTGAGCACCTGC--ACGCTCGTTTCGTGGGT-CGACT-TAG
836 TTGA-CTTAGGCATACG-GAG-TTCAT---TCCCAGTCTAA
* * * * * **
13176673 GCATACGGAGTTCATTGCCACTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** * * * * *
13176738 CTCGAGCATATGCTGGTGCCAC-TTTTTTTTTGTCTGGGCACCATCATCGGAGCACCGCCG-GGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAGA
* * * *
13176801 ACCTAACCGGTGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGG-GTGTCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTG-CGCACATGATGTG
* * *
13176865 CAATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAA-AACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACTCA
*
13176929 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
13176994 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
13177059 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAT
389 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAA
* ** * *
13177124 AAGTTTAAAAAATCTAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATATAAAATGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
13177189 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAACGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
13177254 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
13177319 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCACCCGCCCGCTCATTGCGTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * **
13177384 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAAAATCGAC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
*
13177449 AGCACGTAGAGGGGGACCCGACCGATCCCCGAG-AT-GC-A-CGCTCATTTCGTGGGTTGACTTA
779 AGCACGTAGAGGGGGACCCGACCGATCCCCGAGCATGGCGACCGCTCCTTTCGTGGGTTGACTTA
13177510 GGCATACGGAGTTCATTCCCAGTCTAA
844 GGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
13177537 GCATGCGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCCGCACATGCCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
13177602 CTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGCACCATCGCCGGAGCATCGTCGGAG
66 CT-CGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAG
* * * * *
13177665 AGCCTGACCGTCGGTATTGGGGTTCTGACGATCGGACGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
** **
13177730 GCGATGGGTGCTGGTACTTGGCATTTATATTGGTGCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
13177795 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13177860 TGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
13177925 GTGCATGCCAAAAAAAATACAAGGATCGCATCTACCAACTTTGGGGTCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAA
* *
13177990 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
13178055 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
13178120 ATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCAACTAACCACCCTATCGATCCACGGCTTG
584 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTG
* ** * **
13178184 CGCATCCCTTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTTAGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
13178249 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGGCTGAGGGTTGTGGCAGCAAGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACTGAGGGTTGCGGCAGCAGGATCG
*
13178313 ACAGCACGTAGAGGGGGCCCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTATGGCCGGCTGAG
777 ACAGCACGTAGAGGGGGACCCGACCGAT--CC--C---CG-A----G---C-AT----GGC-GA-
* *
13178378 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
820 ----C---CGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13178436 GCATAAGGAGTTCATTCCCAGTTTGAGATTGGACCAGACTGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* **
13178501 CTC-AGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGAAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAG
* * *** * ** *
13178565 AACCTGATCGACAAAATTAGGGTTCCGGTGATCGGGGGCCCGGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
13178630 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAGCTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
13178695 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13178760 GGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
13178825 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGTCAAAACCCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
13178890 ATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
13178955 GCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
13179020 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
13179085 CATCCCGTCTCTCTGGCC-AGCGTAGTGCCTGCCCGCCTGCCCGCCCGCTCGTTCCGTTGGTTGG
650 CATCCCGTCTCTCTGGCCGA-CGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
13179149 CTTAGGCATACGAAGTTCATACCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* ** * * * * *
13179214 TGGTAGCTCATAGAGGGGGACCCAACCGTTCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
775 CGACAGCACGTAGAGGGGGACCCGACCGAT--CC--C---CG-A----G---C-AT----GGC-G
* * *
13179279 AGCGCCCGCACACTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTGATTCCCAGTC-AA
819 A----CCG----CTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
13179338 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTGCGGTAGCACGTTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * **
13179403 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAGA
* *
13179468 ACCTGACCGGCGGCATTAGGGTTCCCG-CGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTT-CCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
**
13179532 CGATGGGTGCTGGTACTTGGCATTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
13179597 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13179662 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGCTGAA-TTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTT
** *
13179726 CAGCATG-C--CAAAAATACTAAGGATCACATCT-CCAAGTTTGGGGCC-AAACTCCTTCCAAAA
389 GTGCATGCCAACAAAAATAC-AAGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTCCAAAA
** * * *
13179786 AAATTAAAAAAAATCCCGAACCGTAAAAAAGTTTTAAAAATCGTG-AAAATAGGAAAACGATGTC
453 AAATTTTAAAAAATCCCGAACCG-CAAAAAGTTTCAAAAATCATGAAAAATA-GAAAACGA-GTC
*
13179850 ATCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
13179914 CGGCATTGGCACATAGAAATATGAGGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGC
580 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
13179979 TTGCGCATCCCGTCTCTCAGGCCGGCGTAGT----GCCCGCCCGCCTGCTCG-TTCGTCGGATGG
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * **
13180039 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGGCCAGACTGAGGATTGTAGCAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* ** * * * ** * * **
13180104 CGGCAGCACACAAAGGGGCACCCGATCGATCCCC-AGC-TTACAATCC-CACCCCTC-TGACCGG
775 CGACAGCACGTAGAGGGGGACCCGACCGATCCCCGAGCATGGCGA-CCGCTCCTTTCGTG---GG
**** ** * * ***** * *
13180165 TTGAGCACCCGCACGCTCGA-TTCGTGGGTTGATTTAG
836 TTGA-CTTAGGCATAC-GGAGTTCATTCCCAG-TCTAA
* * ** *
13180202 GCCTACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAAACGAGGGTTGGGGCAGCAGATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
* * * * *
13180266 GCTCGAGCATGTGCTGGTGCCGCATTTCTCTTTGAT-GGGGCACCATTGACGGAGCATCATCGAA
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTC-TTCATCGGGGCACCATCGTCGGAGCATCACCGAA
*
13180330 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCACACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
13180394 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCTTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * * *
13180459 CACCCCCTTAAAGAGCATATGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
13180524 TGGGGGCACTTTTTTCAAATGGTAATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
13180589 GTGCATGCCAAAAAAAATACAAGGATCGCATCTACCAACTTTGGGGTCAAAACTCCTTTCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
13180654 AATTTTAAAAAATCCCGAACTGCAAAAACTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
13180719 TGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
13180784 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCCACGGCTTGC
584 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13180849 GCATCCCGTCTCTCTGGCCAACGTAGTACCCGCCCGCCCGTCCACCCGTTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGG
** * ** * * *
13180914 CTTAGGCATACAAATTTCATT-CCAGTCTAAGATTGGATCGGACTGAGGGTTACGGTAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * *
13180978 CGATAGCACGTAGAGGAGGACCCGACTGATCCCCG
775 CGACAGCACGTAGAGGGGGACCCGACCGATCCCCG
13181013 GCTTGCGCAT
Statistics
Matches: 3774, Mismatches: 459, Indels: 211
0.85 0.10 0.05
Matches are distributed among these distances:
858 1 0.00
859 4 0.00
861 6 0.00
862 16 0.00
863 208 0.06
864 240 0.06
865 105 0.03
866 746 0.20
867 125 0.03
868 193 0.05
869 180 0.05
870 63 0.02
871 144 0.04
872 77 0.02
873 2 0.00
874 65 0.02
875 30 0.01
877 1 0.00
878 1 0.00
881 1 0.00
883 3 0.00
886 1 0.00
888 4 0.00
890 86 0.02
891 15 0.00
895 1 0.00
897 1 0.00
898 40 0.01
899 769 0.20
900 99 0.03
901 2 0.00
902 350 0.09
903 194 0.05
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGAGGGGGACCCGACCGATCCCCGAGCATGGCGACCGCTCCTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAA
Found at i:13179341 original size:25 final size:25
Alignment explanation
Indices: 13179313--13179360 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
13179303 GTTGACTTAG
*
13179313 GCATACGGAGTTGATTCCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
13179338 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
13179361 CAAGATCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:13182112 original size:716 final size:715
Alignment explanation
Indices: 13181075--13182491 Score: 2161
Period size: 716 Copynumber: 2.0 Consensus size: 715
13181065 GACACATGTT
* * *
13181075 GGGCTCAGGCATGTGCTGGTGCGGCAATTTTCTTCACCGGCGTACCATCGCCAGGGCATCGACGG
1 GGGCTCAGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGCGCACCATCGCCAGAGCATCGACGG
* * *
13181140 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGCCCGTGGGGGTGTTCGCACATGAT
66 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGCCCGTGGGGGTGTGCGCACATAAT
*
13181205 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
131 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACT
* * * *
13181270 CACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGTTACTAGTAGCCATTAAAGTGTCTGA
196 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACTAATAGCCATTAAAGTGTCTGA
13181335 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTT
261 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTT
* * * **
13181400 TTGTTCATGCCAAAAAAAATAGAAGGATCACGTCTACCAACTTT-GGGCCGAATCTCCTTCCAAA
326 TTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCCTTCCAAA
* * *
13181464 AAAATTTTAAAAAATCTCGAACCT-CAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCG
390 AAAATTTTAAAAAATCCCGAA-CTGCAAAAAGTTTAAAAAATCGAGAAAAATAGAAAACGAGTCA
*
13181528 TCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
454 TCCTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
13181593 GGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGC
519 GGCATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
*
13181657 TTGCGCATCCCGTCTCTCTCGTCAGCGTAGTGCCCACCCGCCCACCCGCTCGCTCGTTTCGTCGG
584 TTGCGCATCCCGTCTCTCTCGCCAGCGTAGTGCCCACCCGCCCACCCGCTCG-T--TTT-GTCGG
* *
13181722 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTGCGGTAGCA
645 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTGCGGTAGCA
13181787 CATGCC
710 CATGCC
* * *
13181793 GGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTT-AGCTGGGGCACCATCGCC-GTAGCATC-A
1 GGGCTCAG-GCATGTGCTGGTGCCGCAATTTTCTTCA-CCGGCGCACCATCGCCAG-AGCATCGA
* * * **
13181854 CCGGAGAACCTGATCGGCGGCATTGGGGTTCTGACGATC-ATGGGGGTCG-GGGGGTGTGCGCAC
63 -CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGA-GGGGCCCGTGGGGGTGTGCGCAC
*
13181917 ATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGA
126 ATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGA
*
13181982 GAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAATAGCCATTAAAGTG
191 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACTAATAGCCATTAAAGTG
* *
13182046 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTTTAGCTGAA
256 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA
* * * *
13182111 TTTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTGCTAAGTTTGGGGCCAAAAATCCTTC
321 TTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCCTTC
* * * *
13182176 CGAAAAAATTTTGAAAAATCCCGAACTGTAAAAAGTTTTAAAAATCGAGAAAAATAGAAAACGAG
386 CAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTAAAAAATCGAGAAAAATAGAAAACGAG
* *
13182241 TCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAA
451 TCATCCTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
13182306 AATGGCATTGGCGTGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAC
516 AATGGCATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAC
* * * * *
13182371 GGCTTGCGCATCCCGTCTCTCTGGCCAGCGTGGTGCCCGCCTGCCCGCCCGCTCGTTTTGTCGGT
581 GGCTTGCGCATCCCGTCTCTCTCGCCAGCGTAGTGCCCACCCGCCCACCCGCTCGTTTTGTCGGT
* * *
13182436 TGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG
646 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTG
13182492 TGGCAGCAAG
Statistics
Matches: 635, Mismatches: 56, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
713 57 0.09
714 3 0.00
715 29 0.05
716 276 0.43
717 182 0.29
718 88 0.14
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
GGGCTCAGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGCGCACCATCGCCAGAGCATCGACGG
AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGCCCGTGGGGGTGTGCGCACATAAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACTAATAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTT
TTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCCTTCCAAAA
AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTAAAAAATCGAGAAAAATAGAAAACGAGTCATC
CTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTCGCCAGCGTAGTGCCCACCCGCCCACCCGCTCGTTTTGTCGGTTGACT
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTGCGGTAGCACATGCC
Found at i:13182632 original size:26 final size:26
Alignment explanation
Indices: 13182602--13182651 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13182592 GTTGAGTTAG
*
13182602 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
*
13182628 GCATAAGGAGTTCATTCCCAGTCT
1 GCATAAGAAGTTCATTCCCAGTCT
13182652 GAGATTGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:13183542 original size:26 final size:26
Alignment explanation
Indices: 13183506--13183557 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13183496 GTTGAGTTAG
*
13183506 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13183532 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13183558 AATTGGATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13184020 original size:907 final size:893
Alignment explanation
Indices: 13181731--13184293 Score: 3560
Period size: 907 Copynumber: 2.8 Consensus size: 893
13181721 GTTGGCTTAG
* * ** * * * *
13181731 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCAAGGGTTGCGGTAGCACATGCCGG
1 GCATAAGGAGTTCATTCCCAGTCTAAAATTGGACCA-GACCGAGGGTTACAGTAGCACATGCTGG
* * * * * *
13181795 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTT-AGCTGGGGCACCATCG-CCGTAGCATCACCGG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCA-CCGGAGCACCATCGTCAG-AGCATCGCCGG
* * * ** * * *
13181858 AGAACCTGATCGGCGGCATTGGGGTTCTGACGATCATGGGGGTCGGGGGGTGTGCGCACATAATG
128 AGAACCTGACCGACGGCATTAGGGTTCCAAC-A--ATCGGAG--GGGGGGTGTGCGCACATGATG
* * *
13181923 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTC
188 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTC
* * *
13181988 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAATAGCCATTAAAGTGTCTGAA
253 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
13182052 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTTTAGCTGAATTTTTT
318 ATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
* *
13182117 TGTGCATGCCAA-AAAAATACAAGGATCATGTCTGCTAAGTTTGGGGCCAAAAATCCTTCCGAAA
383 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * *
13182181 AAATTTTG-AAAAATCCCGAACTGTAAAAAGTTTTAAAAATCGAGAAAAATAGAAAACGAGTCAT
448 AAA-TTTGAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
13182245 CTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13182310 GCATTGGCGTGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCT
577 GCATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCT
* *
13182375 TGCGCATCCCGTCTCTCTGGCCAGCGTGG--TGCCCGCCTGCCCGCCCGCTCGTTTTGTCGGTTG
642 TGCGCATCCCGTCTCTCTGGCCAGCGAGGCCTGCCCG-CTGCCCGCCCGCTCGTTCT-TCGGTTG
* * * *
13182438 ACTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGA
705 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC-CGACCGAGGGTTGCGGCAGCAAGA
*
13182503 TTGGTAGCACACAGAGGGGGACCCGACCGATCCCAGCTTGAGCATCCCGCCCCTCTAGCCAGCTA
769 TTGGTAGCACACAGAGGGGGACCCGACCGATCCCAGCTTGAGAATCCCGCCCCTCTAGCCAGCTA
* *
13182568 AGCGCCCGTACGCTCGTTTCATGGGTTGAGTTAGGCATACGAAGTTCATTCCCAGTCTAA
834 AGCACCCGCACGCTCGTTTCATGGGTTGAGTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
13182628 GCATAAGGAGTTCATTCCCAGTCTGAGATTGGACCAGACTGAGGGTTACAGTAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAAATTGGACCAGACCGAGGGTTACAGTAGCACATGCTGGG
* * *
13182693 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCTGGAGCACCATCGTCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGAGCACCATCGTCAGAGCATCGCCGGAGA
* * * *
13182758 ACTTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGACGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTAGGGTTCCAACAATC-----GGA-GGGGGGGTGTGCGCACATGATGTG
* * *
13182823 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCACATCAAACCTCGGGAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCAC
*
13182888 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13182953 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTCTTTTG
320 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
* *
13183018 TGCATGCCAACAAAAATACAAAGATCACGTCTACTAAGTTTGGGGCCAAAACA-CCTTCCAAAAA
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAA-ATCCTTCCGAAAA
* *
13183082 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
449 AATTTGAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
13183147 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
13183212 ATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACTACCCTATCGATCCACGGCTTG
579 ATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
* *
13183277 CGCATCCCGTCTCTCTGGCCAGAGAAAGGCCCGCCCGTCTGCCCGCCCGCTCGTTCCTTCGGTTG
644 CGCATCCCGTCTCTCTGGCCAGCG--AGGCCTGCCCG-CTGCCCGCCCGCTCGTT-CTTCGGTTG
* * * *
13183342 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
705 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGGCAGCAAGA
* * * * * * * * *
13183407 TTGGTAGCACGCAGAGGGGGACTC-ACCGATCCTCGGCTTGTGAATCCTGCCCCTTTGGCCGGTT
769 TTGGTAGCACACAGAGGGGGACCCGACCGATCC-CAGCTTGAGAATCCCGCCCCTCTAGCCAGCT
* * * *
13183471 GAGCACCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCCGTCTAA
833 AAGCACCCGCACGCTCGTTTCATGGGTTGAGTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** *
13183532 GCATACGGAGTTCATTCCCAGTCTAAAATTGGATTAGACCGA-GGTTACGGTAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAAATTGGACCAGACCGAGGGTTACAGTAGCACATGCTGGG
* *
13183596 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACC-GAGGCACCATCATCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGA-GCA-C--CATC---G--TCA---GAG
* * *
13183660 CATCGTCGGAGAACCTGGCCGACGGCATTAGGGTTCCAACGATC-G-GGGGGGGTGTGCGCACAT
119 CATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCAACAATCGGAGGGGGGGTGTGCGCACAT
*
13183723 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGGGA
184 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGA
* * * *
13183788 ACTCACACCCCCTCAAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGT
249 ACTCACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
13183853 CTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGCTTTTAGCTTATT
313 CTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATT
*
13183918 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
378 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTC
* *
13183983 CGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAG
443 CGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* *
13184048 TCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAAAGG-CCATTGTATGAATTTACAAGCCATAA
508 TCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAA
* *
13184112 AAATGGCATTGGCATGCAAAAAATATGAAGATTTGCCTAAACCCACCAACCACCCTATCGATCCA
572 AAATGGCATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCA
* * * *
13184177 TGGGTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTG-CC-C-GCCCGCCCGCTCGTTTCGT
637 CGGCTTGCGCATCCCGTCTCTCTGGCCAGCG-AG-GCCTGCCCGCTGCCCGCCCGCTCG-TTCTT
* * *
13184239 CAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAG
699 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAG
13184294 CATTGTGGCA
Statistics
Matches: 1495, Mismatches: 133, Indels: 70
0.88 0.08 0.04
Matches are distributed among these distances:
894 2 0.00
896 1 0.00
897 132 0.09
898 86 0.06
899 135 0.09
900 253 0.17
901 1 0.00
902 5 0.00
903 125 0.08
904 225 0.15
905 1 0.00
906 101 0.07
907 379 0.25
908 5 0.00
909 1 0.00
911 3 0.00
914 40 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATAAGGAGTTCATTCCCAGTCTAAAATTGGACCAGACCGAGGGTTACAGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGAGCACCATCGTCAGAGCATCGCCGGAGA
ACCTGACCGACGGCATTAGGGTTCCAACAATCGGAGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTGA
AAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCAGCGAGGCCTGCCCGCTGCCCGCCCGCTCGTTCTTCGGTTGGCTTAGGCATA
CAGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCGGCAGCAAGATTGGTAGCACAC
AGAGGGGGACCCGACCGATCCCAGCTTGAGAATCCCGCCCCTCTAGCCAGCTAAGCACCCGCACG
CTCGTTTCATGGGTTGAGTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:13185158 original size:26 final size:26
Alignment explanation
Indices: 13185128--13185179 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13185118 GTTGAGTTAG
13185128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13185154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13185180 AATTGGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13186078 original size:25 final size:26
Alignment explanation
Indices: 13186021--13186098 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
13186011 GTTGAGTTAG
* *
13186021 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13186047 GCATACGGAGTTCATTCCTAG-CTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13186072 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13186098 G
1 G
13186099 ATCTGACCGG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 22 0.48
26 24 0.52
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13187686 original size:26 final size:26
Alignment explanation
Indices: 13187650--13187701 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13187640 TTGAGTTAGA
13187650 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13187676 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13187702 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13189059 original size:717 final size:711
Alignment explanation
Indices: 13187675--13189133 Score: 2093
Period size: 717 Copynumber: 2.0 Consensus size: 711
13187665 CCCAGTCTAA
** * * * *
13187675 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGTTTGCGGTAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACCAAGGGTTGCGGCAGCACTTACTGGG
* * * * * * *
13187740 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCCCCATCGTCGGAGCAGCATCGGAGA
66 CTCGAGCATGTACTGGTGCCACAATTTTCTTCGCCGGGGCACCATCGTCGGACCAGCACCGAAGA
* ** * * *
13187805 GCCTGACCGACAGCATTGGGATTCCGGTGATCGGGGGGGTCGGGAAGGGTCTGCGCACATGATGT
131 GCCTGACCGACAGCATTGGGATACCGACGATCAGGGGGGCCGGG-AGGGTCTGCGCACATGATAT
* *
13187870 ACGATGGATGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCA
195 ACGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
13187935 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
* *
13188000 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGATGTTTTAACTGAATTGTTTC
325 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAATGTTTTAACTCAATTGTTTC
* * *
13188065 GTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAGAATCCCTTCCCAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCCAAAA
* *
13188130 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
13188195 TGCCATGAAACTTCACATGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * **
13188260 ATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACCAACCACCCTATCGATCCACGACTTTT
585 ATTGGCACACAGAAATAGGAAGATGTACCCAAACCCACCAACCACCCTATCGATCCACGACTTGC
* * *
13188325 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGCACATTTCGTCGGTTGGCTTA
650 ACATCCCATCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCG----TTTCGTCGGTTGGCTTA
13188390 G
711 G
** * *
13188391 GCATACGGAGTTCATTCCCAGTCTAAGATCCGATTGTACCAAGGGTTGCGGCAGCA-TATACTGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACCAAGGGTTGCGGCAGCACT-TACTGG
* * * * *
13188455 GCTCGGGCATGTACTGGTGCCATAATTTTCTTCGCTGGGGCACCATCGTCGGACCATCGCCGAAG
65 GCTCGAGCATGTACTGGTGCCACAATTTTCTTCGCCGGGGCACCATCGTCGGACCAGCACCGAAG
* * * *
13188520 AGCCTGACCGACGGCATTGGGGGTACTGACGATCAGGGGGGCCGAGG-GGTGTGTGCGCACATGA
130 AGCCTGACCGACAGCATT-GGGATACCGACGATCAGGGGGGCCG-GGAGG-GTCTGCGCACATGA
* * *
13188584 TATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
192 TATACGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
13188649 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTG
* * * * *
13188714 AAATGGGGGCACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCAA-GTTTTTAGCTCAATTT
322 AAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAATG-TTTTAACTCAATTG
*
13188778 TTTTGTGCATGCCAAAAAAAATA-AAGGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTT-
386 TTTCGTGCATGCCAAAAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCC-AAAATCCCTTC
13188840 CCAAAAAATTTTAAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGA
449 CCAAAAAATTTT-AAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
13188905 GTCGTGTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
513 GTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
13188970 AAATGGCATTGGCATGCAGAAATAGGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCAC
578 AAATGGCATTGGCACACAGAAATAGGAAGATGTACCCAAACCCACCAACCACCCTATCGATCCAC
* **
13189035 GACTTGCACATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTTGTTTCGTCGGTTGGC
643 GACTTGCACATCCCATCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGTTTCGTCGGTTGGC
13189100 TTAG
708 TTAG
* * *
13189104 TCATACGGATTTCATTCCCAATCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
13189134 AGACTAGACT
Statistics
Matches: 661, Mismatches: 74, Indels: 19
0.88 0.10 0.03
Matches are distributed among these distances:
713 45 0.07
715 1 0.00
716 139 0.21
717 470 0.71
718 6 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACCAAGGGTTGCGGCAGCACTTACTGGG
CTCGAGCATGTACTGGTGCCACAATTTTCTTCGCCGGGGCACCATCGTCGGACCAGCACCGAAGA
GCCTGACCGACAGCATTGGGATACCGACGATCAGGGGGGCCGGGAGGGTCTGCGCACATGATATA
CGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAATGTTTTAACTCAATTGTTTCG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCCAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATAGGAAGATGTACCCAAACCCACCAACCACCCTATCGATCCACGACTTGCA
CATCCCATCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGTTTCGTCGGTTGGCTTAG
Found at i:13189424 original size:185 final size:185
Alignment explanation
Indices: 13189105--13189529 Score: 559
Period size: 185 Copynumber: 2.3 Consensus size: 185
13189095 TTGGCTTAGT
* * * *
13189105 CATACGGATTTCATTCCCAATCTAAGATCAGACTAGACTGAAGGTTACGGCAGCAGGATCGGTAG
1 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGGATCGATAG
* * * * * **
13189170 CACGCAGAGGGGGACTCGATCGATCGTCGGCTTGTGCATCTCGCCCCTCTGGCCAACTGAGTGCC
66 CACCCAAAGGGGGACCCGATCGATCGCCGGCTTGTGCATCTCGCCCCTCTAGCCAACTGAGCACC
*
13189235 CGCACGATCGTTTCGAGGGTTGACTTAGGCAGAC-GAAGTTCATTCCCAGTCTAAG
131 CGCACGATCATTTCGAGGGTTGACTTAGGCAGACAG-AGTTCATTCCCAGTCTAAG
* * * * * * *
13189290 CATACGGAGTTCATTCCCAGTTTAAGATCTGACCGGACCGAGGGTTGCGGCAGTAGGATCGATAG
1 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGGATCGATAG
*
13189355 CACCCAAAGGGGGACCCGATCGATC-CCAGGCTTGTGCATC-CTGCCCCTCTAGCCGACTGAGCA
66 CACCCAAAGGGGGACCCGATCGATCGCC-GGCTTGTGCATCTC-GCCCCTCTAGCCAACTGAGCA
* * *
13189418 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
129 CCCGCACGATCATTTCGAGGGTTGACTTAGGCAGACAGAGTTCATTCCCAGTCTAAG
** * *
13189475 CATACGGAGTTCATTCCCAATCTAAGATCAGGTCAGACCGAGGGTTACAGCAGCA
1 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACGGCAGCA
13189530 CATGCTAGGC
Statistics
Matches: 205, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
184 2 0.01
185 202 0.99
186 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
CATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGGATCGATAG
CACCCAAAGGGGGACCCGATCGATCGCCGGCTTGTGCATCTCGCCCCTCTAGCCAACTGAGCACC
CGCACGATCATTTCGAGGGTTGACTTAGGCAGACAGAGTTCATTCCCAGTCTAAG
Found at i:13189484 original size:26 final size:26
Alignment explanation
Indices: 13189448--13189500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13189438 GTTGACTTAG
*
13189448 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13189474 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13189500 G
1 G
13189501 ATCAGGTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13190373 original size:26 final size:26
Alignment explanation
Indices: 13190337--13190388 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13190327 TTGACTTAGC
*
13190337 CATACAGAGTTGATTGCCAGTCTAAG
1 CATACAGAGTTCATTGCCAGTCTAAG
* *
13190363 CATATAGAGTTCATTGCTAGTCTAAG
1 CATACAGAGTTCATTGCCAGTCTAAG
13190389 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTGCCAGTCTAAG
Found at i:13191255 original size:26 final size:26
Alignment explanation
Indices: 13191215--13191267 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13191205 GTTGACTTAG
13191215 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
*
13191241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
13191267 G
1 G
13191268 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:13192149 original size:26 final size:26
Alignment explanation
Indices: 13192120--13192172 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13192110 GTTGACTTAG
* *
13192120 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAATTCACTCACAGTCTAA
* *
13192146 GCATATGGAATTCATTCACAGTCTAA
1 GCATACGGAATTCACTCACAGTCTAA
13192172 G
1 G
13192173 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCACTCACAGTCTAA
Found at i:13193052 original size:26 final size:26
Alignment explanation
Indices: 13193016--13193068 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13193006 GTTGACTTAG
13193016 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13193042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13193068 G
1 G
13193069 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13193163 original size:11 final size:11
Alignment explanation
Indices: 13193147--13193180 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
13193137 TCGTCGGGCC
*
13193147 ACCATCGTCGG
1 ACCATCGCCGG
13193158 ACCATCGCCGG
1 ACCATCGCCGG
*
13193169 ACCATTGCCGG
1 ACCATCGCCGG
13193180 A
1 A
13193181 GAACCTGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.38, G:0.26, T:0.15
Consensus pattern (11 bp):
ACCATCGCCGG
Found at i:13193981 original size:26 final size:26
Alignment explanation
Indices: 13193945--13193997 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13193935 GGTGAATTAG
*
13193945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
13193971 GCATATGGAGTTGATTCGCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13193997 G
1 G
13193998 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13194875 original size:26 final size:26
Alignment explanation
Indices: 13194846--13194898 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13194836 GTTGACTTAG
13194846 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13194872 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13194898 G
1 G
13194899 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13195353 original size:898 final size:896
Alignment explanation
Indices: 13190461--13200713 Score: 13213
Period size: 898 Copynumber: 11.4 Consensus size: 896
13190451 TTTTCTTCGT
** * * *
13190461 CGGAGAACCTGACCGGCGGCATTGGCATTCCGGCAATCGAGGGGGCCGGGGGGGTGTGTGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACAT
*
13190526 GATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGA
* * * *
13190591 ACTCACACCCACTTAAAGAGGATTTGAGAGTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTC
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
13190656 TGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATT
193 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * **
13190721 GTTTTGTGCATGCCAACAAAAATACTAGGATCACGTCTGCCAAGTTTGGGGTAAAAACTCCTTCC
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
13190786 GAAAGAATTTTAAAAAATCCCGAACCGTAAAACGTTTCAAAAATCATGAAAAATAGAAAACAAGT
323 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
13190851 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
13190916 ATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
453 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * * * * *
13190981 CTTGCGCATCCCATCTCTCAGGTTGACGTAATGCCCTTCTGCCTGCCCGCCCGTTCGTTTCATCA
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC--C-GCCCGCCCGCCCGCTCGTTTCATCG
* * * *** * ** *
13191046 GTTGGCTTAGGCATACGAAGTTCATTCCCAATCCAAGATC-GAATTGGTCTGAGGGTTAAGGCAG
579 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGTAG
* * * * * * * * *
13191110 CAGGACCGGCAGCACGTAGAGGAGGACCCAGCCAATCCTCGGTTTGCGCATACCGCCCCTCTAGC
643 CAGGATCAGCAGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGC
* *
13191175 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTA
707 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
13191240 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGATTGCGACAGCACATGCTGG
772 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
13191305 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGC
837 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * **
13191365 CAGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGCGGGGGCCGTGGGGGTGTAAGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGTGTGCGCACAT
* * * *
13191430 GATGTGCGATGGGTGCTAGAACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAAGCTCAAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGA
* *
13191495 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATACCCATTAAAGTGTC
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
13191560 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATT
193 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
13191625 TTTTTGTGCGTGCCAA-AAAGAATACAAGGATCACGTCTACCATGTTTCGGGCTAAAACTCCTTC
258 TTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
13191689 CAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
322 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * *
13191754 TCATCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAA
387 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
13191819 AATGGCATTGGCACGCAGAAATATGAAGAATGTGCCTAAACCAACCTACCACCCTAACGATCCAC
452 AATGGCATTGGCACGCAGAAATATGAAG-ATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * * *
13191884 GGCTTGTGAATCTTGTCTCTCTGGCCGACGTAGTGCCCACCCGCGTGCCCGCCCGCTCGTTTCGT
516 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCC-C--GCCCGCCCGCTCGTTTCAT
* ** *
13191949 CGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTA
577 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTA
** * * * * *
13192014 GCAGGATGGGCAGCACATAGAGGGGGACCCGATCGATCGCCGGCTTGCACATCCCGCCCCACTGG
642 GCAGGATCAGCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATTCCGCCCCTCTGG
* * *
13192079 CCGGCTGAGCGCCCGCGCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCT
706 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
13192144 AAGCATATGGAATTCATTCACAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTG
771 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* *
13192209 GGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC
836 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * *
13192270 TGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
* ** * * *
13192335 TGTGCGATGGGCGCTGGTACTTTTCCCTTATATTGGCCCCCATCCCTCATCAAACCTCAATAACT
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
13192400 AACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
131 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
13192465 AATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAA-TTTT
196 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * * *
13192529 TTATGCATGCCAACAAAAATATGAGGATCATGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAA
261 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
13192594 AAAATTTTAAAAAATCCCAAATCGCAAATAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
326 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
13192659 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
391 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
13192724 GCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTT
456 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * *
13192789 GCGCATCCCATCTCTCTGGTCGGCGTAGTGCCTACCCGCCCGTCCGCTCGTTTCATCGGTTGCCT
521 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * *
13192854 TAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGACC-GAACCGAGGGTTGTGGCAGCAAGATC
586 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGTAGCAGGATC
* * * * * *
13192918 -GACAGCATGTAGAGGGGGACCTGACTGATCCCTGGCTTACACA-TCCGGCCCCTCTGGCCGGCT
650 AG-CAGCACGTAGAGGGGGACCCGTC-GATCCCCGGCTTGCGCATTCC-GCCCCTCTGGCCGGCT
* *
13192981 GAGCGCCCACACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
712 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
** *
13193046 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
777 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * *
13193111 AGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGCCACCATCGTCGGACCATCGCCGGACCATTG
842 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG--------G-C--ACCATCGCCGGAGCATCG
13193176 C
896 C
*
13193177 CGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGAGGGGCCGAGGGGGGTGTGCGCACA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC--GGGGGGTGTGCGCACA
* **
13193242 TGATGTGCGATGGGCGCTGGTACTTTTCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAG
63 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAG
* *
13193307 AAATCACACCCCCTTAAAGAACCATTAAAGAGCATTTGAGATTTTACATGTTTGCTG-CAGTAGC
127 AACTCACA--CCC--------CC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
13193371 CATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
181 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
13193435 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGTTCATGTCTACCAAGTTTGGGGCC
246 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
13193500 AAATCTCCTTTCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAA
311 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
13193565 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
376 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*** * *
13193630 CAAGCCATAAAAATGGCATTGGCATTTAGAAATATGAAGATATACCTAAACCCACCTACCACCCT
441 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
13193695 ATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCGACCGCCCCACCGCCCG
506 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCGC-CCGCCCG
* * *
13193760 TCCACTCGTTTCATCGATTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
567 ----CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
13193825 TGAGGGTTGCAGCAGTAGGATCTGCAGCACGAAGAGGGGGACCCGATCGATCCCCGGCTTACGCA
628 TGAGGGTTGCGGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCA
* * * * *
13193890 TCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGGTGAATTAGGCATACGGAG
692 TTCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
13193955 TTCATTCCCAGTCTAAGCATATGGAGTTGATTCGCAATCTAAGATCGGATCAGATCGGACCGAGG
757 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C----CGGACCGAGG
* * * * * *
13194020 GTTGGGGCAGCATATGCTGGGCTCGAGCATTTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCA
817 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
13194085 ACGTCGGTGCATCAC
882 TCGCCGGAGCATCGC
* * *
13194100 CAGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATG
13194165 ATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCT-TGCCCTCATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT-CCCTCATCAAACCTCGAGAA
*
13194228 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
13194293 CAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * ** **
13194358 TTTTGTGCGTACCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCACCAAAACTCCTTTTG
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
13194423 AAAAAA-TTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTC
324 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
13194487 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
13194552 TGGCATTGGAATGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGC
454 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
13194617 TTGCGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGG
519 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
** * *
13194682 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAAGGATGCGGTAGCAGGAT
584 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGAT
* * *
13194747 CAGCAGCACGTAAAGGGCGACCCAGTCGATCCCCGGCTTGCGCATTCCGTCCCTCTGGCCGGCTG
649 CAGCAGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTG
** * * * *
13194812 AGCGGTCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATG
713 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
13194877 CAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAGATGCTAGGCTCGG
778 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
** * * *
13194942 GCATGTGCTGGTGCCATATTTTTCTTC-TCCAGGGCACCATCACCGGAGCATCGT
843 GCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGCCGGAGCATCGC
* * * * * * **
13194996 CGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATTGGGGCTGTCAGGGGCGTGTGCTTACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG--GGCCGGGGGGTGTGCGCACAT
* * * *
13195061 GATGTGCAATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCACCAAACCTTGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGA
* * *
13195126 ACTCACA-CCCCTTAAAGAGCATCTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTT
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
13195190 TGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATT
193 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * **
13195255 TTTTTATGCATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGG-CAAAACTCCTTTT
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
13195319 GAAAAAATTTTAAAAAATCCCGAACAGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
323 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
13195384 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** * *
13195449 ATTGCATTGGCACATAGAAATATGAAGATGTGCCTAAACTCACCTACCACCTTATCGATCCACGG
453 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
13195514 CTTGCGCATCCCGTCTCTCTGCCCAGCGTAGTTCCCGCCCGCCCGCCCGCTCGTTTCATCGATTG
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
* * * *** * ** *
13195579 GCTTAGGCACACGTAGTTCATTCCCAGTTTAAGATCAGATTGGACCGAGGGTTATGGTAGTAGGA
583 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGA
*
13195644 TCAGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA-TCCGGCCCCTCTGGCCGGC
648 TCAGCAGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATTCC-GCCCCTCTGGCCGGC
* * *
13195708 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTTATTCCCAGTCTAAGCA
711 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
13195773 TATGGAGTTCATTCCCAGTCTAACATCGGACTGGACCGAGGTTTACGGCAACACATGCTGGGCTC
776 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* ** * * *
13195838 GGGCATGTGCTGGAGCCGCATTTTTCTTCGTTAGGGCACCATCGCCGAAGCATTGT
841 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * *
13195894 CGGAGAACCTGACCGACGACATTGAGGTTCC-ATCGATCGGGAGGGCCGGGGGATGTGCGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGG-GGGCCGGGGGGTGTGCGCACAT
* *
13195958 GATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGA
* * * *
13196023 ACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAATCAAGTGTC
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * **
13196088 TGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAATTTTAGCTGAATT
193 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
13196153 TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
13196218 GAAAAAA-TTT------T----------AAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGT
323 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
13196266 TGTCTTGCCATGAAACTTCACGTGAAGGCTTGAA-AGACCATTGTATGAATTTACAAGCCATAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
13196330 AATGGCATTGGCATGTAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATG
452 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
13196395 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCTGTCCGCCCGCCCTCTCGTCTCGTC
517 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCATC
* * * *
13196460 GGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTCAGATCGGACC-GAACTGAGGGTTGCTGTA
578 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGTA
* * * * * * * * *
13196524 GCAGGATCGGCAGCATGCAAAGGGGGACCCGGCTGATCCTCGACTTGCGCATTTCGCCCCTTTGG
642 GCAGGATCAGCAGCACGTAGAGGGGGACCCGTC-GATCCCCGGCTTGCGCATTCCGCCCCTCTGG
* * * * *
13196589 TCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTT-AGCTTAGGCATATGGAGTTTATTCCCAGTC
706 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTC
** * * *
13196653 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCAGCAGCACATGCT
770 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * *
13196718 GGGCTCGAGCATGCGCTGGTACCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGC
835 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
** * * * *
13196780 CGGAGAACCTGACCAACGGTATTAGGGTTCTGACGATCGGGGGGGGCGGGGGGGGTGTGCGC-CA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGGGC-CGGGGGGTGTGCGCAC-
*
13196844 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
62 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGA
*
13196909 GAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
126 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
13196974 TCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-CACTTCGAGGTTTTAGCTGAA
191 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
13197038 TTTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTGGGGGCCAAAACTTCTT
256 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * ** * * **
13197103 CCGAAAAAATTTTCAAAAATCTCGAAACGCAAAGAGTTTTGAAAATCGTGGAAAATAGAAAGTGA
321 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* * * *
13197168 GTCCTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATCAATTTACAAGCCATAA
386 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
13197233 AAATGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
451 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
13197298 GACTTGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCAACCCGACCGCCCGCCCGCTCGTT
516 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG------C--CCGCCCGCCCGCTCGTT
* * ** *
13197363 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAGA-TCGAGGGTTG
573 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTG
* * * * * *
13197427 CGGCAGTAGGATCAGTAGCATGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGTA-TCCTGCCC
637 CGGTAGCAGGATCAGCAGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATTCC-GCCC
* * * **
13197491 CTCTGGCTGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCC
700 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * * *
13197556 CAGTCTAAGCATACGGAATTCATTCCTAGTTTAAGATCAGATCAGACCGAGGGTTGCAGCAGCAC
765 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
** ** * *
13197621 ATGCCCGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGTATC
830 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
*
13197686 GT
895 GC
* * *
13197688 CGGAGAACCTGACCGGTGGCATTGGGGTTCC-AGCGATCGGGGGGCCGGGGGGTGTGCCCGCATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATG
* * *
13197752 ATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
* *
13197817 CTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
13197882 GAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** *
13197947 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTTTTCCA
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * * *
13198012 AAAAAATTTGAAAAAATCCCGAACCCCAAAAACTTTCAAAAATCGTGAAAAATCGAAAATGAGTC
324 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
13198077 GTCTTGCCATGAAACTTCACGTGAAATG-TTAAGGGACCATTGTATGAATGTACAAGCCATAAAA
389 GTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
13198141 ATGGCATTGGCACACAAAAATATGAATATGAGCCTAAACCCACCTACCACCCTATCGATCCATGG
453 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
13198206 CTTACGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGCCCGCCTGCCCACTCGTTTCATCG
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCATCG
* * * *
13198271 TTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCGGACTGAGGGTTGCAGTAGT
579 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGC
* ** * * * * * *
13198335 AGGATCGGCAGCACACAGAGGGGGACCTAGCCGATCCCCGACTTGTGCATCCCGCCCTTCTGGCC
644 AGGATCAGCAGCACGTAGAGGGGGACC-CGTCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCC
* * * * * *
13198400 GGCTGAGCACCTGCACACTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
708 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
13198465 GCATATGGAGTTCGTTCCTAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTAGG
773 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** ** **
13198530 CTCGGGCATGTGCTGTTGTCGCATTTTTGTTCACCGGGGCACCATCATCGGAGCATCAT
838 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
** *
13198589 CGGAGAACCTGACCGGCGTAATTGGGATTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATG
13198654 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
* * *
13198719 CTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGTCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* ** *
13198784 GGAATAAGGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
13198849 ATTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTTCCAAGTTGGGGGCTAAAACTCCTTCC
259 TTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* ** ** ** *
13198914 AAAAAAATTTTAAAAAATTTCGAACCGCAAAGTGTTTTGAAAATCATGAAAAATAAAAAACGAGT
323 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
13198979 CGTCCTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGCATGAATTTACAAGCCATAAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
13199044 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGG
453 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * * ***
13199109 CTTGCGCATCCTATCTCTCTGGCCGGCGTAATGCCCGCCCACCCGCCCGCTCGTTTCATTAATTG
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
* * * ** * *
13199174 GCTTAGGGATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGTGGT-GCCAAG
583 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAG-CAGG
* * * * * * *
13199238 ATCAGCACCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCACCTCCCGCCCCTCTGGCCAGC
647 ATCAGCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGC
* * * *
13199302 TGAGCGCCTGCACGCTCGTTTTGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
711 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
13199367 TACGGAGTTCATTCCCAGTCTATGATCGGACTGGACCGAGGGTTGCGGCAGCACATTCTGGGCTC
776 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
13199432 GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
841 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * *
13199488 CAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGAGGGTCGGGGGGGTGTGCGCAAAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGG-CCGGGGGGTGTGCGCACAT
* * *
13199553 GATGTGCAATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGA
*
13199618 ACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
13199683 TGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTT
193 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
13199748 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAACACTCCTTCC
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * * ** * *
13199813 -CAAAAAGTTTAAAAAGTCTCGAACCGTAAAAAGTTTCAAAATTTGTGAAAAGTAGAAAATGAGT
323 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
** * *
13199877 TATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
13199942 ATGGCATTGGCATGCAGAAATATGAAGATGCGCATAAACCCACCTACCACCCTATCGATCCATGG
453 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
13200007 CTTGCACATCTCGTCTCTCTAGCCGACGTAGTGCCCACCCGCCCACCCGCTCGTTTCTTAGGTTG
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
* * * * * *
13200072 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTACGGCAGCAAGA
583 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGA
* * * * * *
13200137 TCAGCAGCA--TACTGAGGGGGACTCGGTCGATCCCCGGCATGCGCATCCCTCCCTTTTGGCCGG
648 TCAGCAGCACGTA--GAGGGGGAC-CCGTCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGG
* * * * *
13200200 TTGAGCACCCGCACGCTCCTTTCGTGTGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGC
710 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
** * * *
13200265 ATACGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTACGACAGCACATGCTGGGCT
775 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * **
13200330 CGGGCATGTGCTGGTGTCGTATTTTTCTTTGTCAGGGCAACATCGCCGGAGCATCAT
840 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * *
13200387 CGGAGAACCTGATCGGCAGTATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTACGCACATA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATG
* * * * **
13200452 ATGTGCGATGGGCGCTGGTATTTGACCCTTATATTGGCCCCCTTTCAGTCATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
* *
13200517 CTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
13200582 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
13200647 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCG
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
13200712 AA
324 AA
13200714 GTAATGGACC
Statistics
Matches: 8195, Mismatches: 1006, Indels: 301
0.86 0.11 0.03
Matches are distributed among these distances:
882 181 0.02
883 2 0.00
884 1 0.00
885 5 0.00
886 316 0.04
887 94 0.01
888 176 0.02
889 4 0.00
892 1 0.00
894 1 0.00
895 10 0.00
896 384 0.05
897 142 0.02
898 1410 0.17
899 620 0.08
900 318 0.04
901 672 0.08
902 423 0.05
903 306 0.04
904 617 0.08
905 569 0.07
906 290 0.04
907 60 0.01
908 348 0.04
909 236 0.03
910 175 0.02
911 26 0.00
913 3 0.00
917 3 0.00
918 1 0.00
919 28 0.00
920 67 0.01
921 337 0.04
922 32 0.00
923 54 0.01
924 5 0.00
925 7 0.00
926 1 0.00
929 204 0.02
930 6 0.00
934 60 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCA
GCAGCACGTAGAGGGGGACCCGTCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
Found at i:13195773 original size:26 final size:26
Alignment explanation
Indices: 13195744--13195795 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13195734 GTTGGCTTAG
*
13195744 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13195770 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13195796 CATCGGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13196659 original size:26 final size:26
Alignment explanation
Indices: 13196630--13196682 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13196620 GTTAGCTTAG
* *
13196630 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13196656 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13196682 G
1 G
13196683 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13198475 original size:26 final size:26
Alignment explanation
Indices: 13198439--13198491 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13198429 GTTGACTTAG
13198439 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
*
13198465 GCATATGGAGTTCGTTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
13198491 G
1 G
13198492 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCTAGTCTAA
Found at i:13199374 original size:26 final size:26
Alignment explanation
Indices: 13199338--13199388 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13199328 GTTGATTTAG
*
13199338 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13199364 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
13199389 TGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13199484 original size:899 final size:896
Alignment explanation
Indices: 13196229--13200713 Score: 5684
Period size: 899 Copynumber: 5.0 Consensus size: 896
13196219 AAAAAATTTT
* * *
13196229 AAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
13196294 CTTGAA-AGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
66 CTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
13196358 TTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
13196423 GTAGTGCCCACCTGTCCGCCCGCCCTCTCGTCTCGTCGGTTGGCTTAGGCATACGTAGTTCATTC
195 GTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
13196488 CCAGTCTCAGATCGGACCGAACTGAGGGTTGCT-GTAGCAGGATCGGCAGCATGCAAAGGGGGAC
256 CCAGTCTAAGATCAGACCGGACCGAGGGTTG-TGGT-GCAGGATCAGCAGCACGCAGAGGGGGAC
* * * ** * * * *
13196552 CCG-GCTGATCCTCGACTTGCGCATTTCGCCCCTTTGGTCGGCTAAGCACCCGCACGCTCGTTTC
319 CCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
13196616 GTGGGTT-AGCTTAGGCATATGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
383 GTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** * * * * *
13196680 AAGATCAAACTGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGCGCTGGTACCGCAT
447 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * ** *
13196745 TTTTCTTCATCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAACGGTATTAGGGTTC
512 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGGTTC
* *
13196810 TGACGATCGGGGGGGGCGGGGGGGGTGTGCGC-CAATGATGTGCGATGGGTGCTGGTACTTGGCC
576 CGACGATC--GGGGGGC-CGGGGGGTGTGCGCAC-ATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
13196874 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCACACCCCCTTAAAGAGCATTTGAG
637 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
13196939 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGT
702 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
13197004 CACAAAATCTTGT-CACTTCGAGGTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAAG
767 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
13197068 GATCACGTCTTCCAAGTTGGGGGCCAAAACTTCTTCCGAAAAAATTTTCAAAAATCTCGAAACGC
832 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
* ** * * ** * *
13197133 AAAGAGTTTTGAAAATCGTGGAAAATAGAAAGTGAGTCCTCCTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * *
13197198 CTTAAGGGATCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * *
13197263 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCCCATCTCTCTGGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
*
13197328 TAGTGCCCGCCAACCCGACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
196 TAGTGCCCG------C--CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * * * * * * * *
13197393 TTCCTAGTCTAAGATTGGATCAGATCGAGGGTTGCGGCAGTAGGATCAGTAGCATGTAGAGGGGG
253 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGG-TGCAGGATCAGCAGCACGCAGAGGGGG
* * * * * * *
13197458 ACCCGGTCGATCCCCAGCTTGCGTATCCTGCCCCTCTGGCTGGTTGAGTGCCCGCACGCTCGTTT
317 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
** * * *
13197523 CGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCTAGTTT
382 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * **
13197588 AAGATCAGA-TCAGACCGAGGGTTGCAGCAGCACATGCCCGGCTCGGGCATGTGCTGGTGCCGCA
447 AAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** * * *
13197652 TTTTTCTTCACCGGGGCACCATCACCGGAGTATCGTCGGAGAACCTGACCGGTGGCATTGGGGTT
511 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGGTT
* * *
13197717 CC-AGCGATCGGGGGGCCGGGGGGTGTGCCCGCATGATGTCCGATGGGTGCTGGTACTTGGCCCT
575 CCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
13197781 TATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGAT
639 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
13197846 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCA
704 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
13197911 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
769 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
** * * *
13197976 TCACGTCTACCAAGTTTGGGGCCAAAACTTTTTCCAAAAAAATTTGAAAAAATCCCGAACCCC
834 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
* * * * *
13198039 AAAAACTTTCAAAAATCGTGAAAAATCGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAAT
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAG
* * * *
13198104 G-TTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAT
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * * *
13198168 ATGAGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTTTGGTCGGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
13198233 GTAGTGCCCGCCCGCCCGCCTGCCCACTCGTTTCATCGTTTGGCTTAGGCATACGGAGTTCATTC
195 GTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * *
13198298 CCAGTCTAAGAT-AGACCGGACTGAGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGA-C
256 CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGT-GCAGGATCAGCAGCACGCAGAGGGGGACC
* * * * * * * * *
13198361 CTAGCCGATCCCCGACTTGTGCATCCCGCCCTTCTGGCCGGCTGAGCACCTGCACACTCGTTTTG
320 CGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * *
13198426 TGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCGTTCCTAGTCTAA
384 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
13198491 GATCAGACCGGACCGAGGGTTATGGCAGCACATGCTAGGCTCGGGCATGTGCTGTTGTCGCATTT
449 GATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* ** ** * **
13198556 TTGTTCACCGGGGCACCATCATCGGAGCATCATCGGAGAACCTGACCGGCGTAATTGGGATTCCG
514 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG-TTCCG
13198621 ACGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
578 ACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
13198686 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTT
642 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * ** *
13198751 ACAGATTTGCTGTCAGTAGCCATTAAAGTGTCTGGAATAAGGACACTTTTTACAAATGGTCACAA
707 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
13198816 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGTGCATGCCAAAAAAAAATACAAGGATC
772 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATC
* * * * **
13198881 ACGTCTTCCAAGTTGGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATTTCGAACCGC
836 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
** ** * * *
13198942 AAAGTGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGA
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
13199007 CTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* **
13199072 TGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *** *
13199137 TAATGCCCGCCCACCCGCCCGCTCGTTTCATTAATTGGCTTAGGGATACGGAGTTCATTCCCAGT
196 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * * * *
13199202 CTAAGATCGGACCAAACCAAGGGTTGTGGTGCCAAGATCAGCACCACGCAGA-GGGGACCCGACC
261 CTAAGATCAGACCGGACCGAGGGTTGTGGTG-CAGGATCAGCAGCACGCAGAGGGGGACCCGATC
* * * * *
13199266 GATCCCCGGCTTGCACCTCCCGCCCCTCTGGCCAGCTGAGCGCCTGCACGCTCGTTTTGTGGGTT
325 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
13199331 GATTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGG
390 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* *
13199396 ACTGGACCGAGGGTTGCGGCAGCACATTCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC
455 ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
13199461 GTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
520 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATC
* * * *
13199526 GGGAGGGTCGGGGGGGTGTGCGCAAATGATGTGCAATGGGTGCTGGTACTTGGCCCTTACATTGG
584 GGG-GGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
13199591 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGG
647 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
13199656 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCT
712 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
13199721 TGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
777 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * *
13199786 ACCAAGTTTGGGGCCAACACTCCTTCC-CAAAAAGTTTAAAAAGTCTCGAACCGT
842 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
* ** * * ** *
13199840 AAAAAGTTTCAAAATTTGTGAAAAGTAGAAAATGAGTTATCTTGCCATTAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
13199905 CTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * * * * *
13199970 TGCGCATAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCTCGTCTCTCTAGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
13200035 TAGTGCCCACCCGCCCACCCGCTCGTTTCTTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
196 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** ** * * ** * * *
13200100 CTAAGATCAAACCGGATTGAGGGTTACGGCAGCAAGATCAGCAGCATACTGAGGGGGACTCGGTC
261 CTAAGATCAGACCGGACCGAGGGTTGTGG-TGCAGGATCAGCAGCACGCAGAGGGGGACCCGATC
* * * * * * * *
13200165 GATCCCCGGCATGCGCATCCCTCCCTTTTGGCCGGTTGAGCACCCGCACGCTCCTTTCGTGTGTT
325 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
13200230 GACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
390 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
13200295 ATTGAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTT
455 ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
13200360 GTCAGGGCAACATCGCCGGAGCATCATCGGAGAACCTGATCGGCAGTATTGGGGTTCCGACGATC
520 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATC
* * * * *
13200425 AGGGGGGCCGGGGGGTGTACGCACATAATGTGCGATGGGCGCTGGTATTTGACCCTTATATTGGC
584 -GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* ** *
13200490 CCCCTTTCAGTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGT
648 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
13200555 TTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
713 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
13200620 GTACACTTCGAGTTTTTCGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA
778 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
*
13200685 CCAAGTTTGGGACCAAAACTCCTTCCGAA
843 CCAAGTTTGGGGCCAAAACTCCTTCCGAA
13200714 GTAATGGACC
Statistics
Matches: 3115, Mismatches: 427, Indels: 83
0.86 0.12 0.02
Matches are distributed among these distances:
898 540 0.17
899 571 0.18
900 262 0.08
901 262 0.08
902 273 0.09
903 249 0.08
904 177 0.06
905 178 0.06
906 286 0.09
907 5 0.00
908 310 0.10
909 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCGGACCGAGGGTTGTGGTGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCG
ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
TCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGTTCCGACGATCGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
Found at i:13200273 original size:26 final size:26
Alignment explanation
Indices: 13200237--13200289 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13200227 GTTGACTTAG
*
13200237 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13200263 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13200289 G
1 G
13200290 ATCGGATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13204190 original size:714 final size:712
Alignment explanation
Indices: 13200719--13205242 Score: 6337
Period size: 715 Copynumber: 6.3 Consensus size: 712
13200709 CCGAAGTAAT
* * * * *
13200719 GGACCATTGTATGAAATTACAAGCCATGAAAATGGCATTGGCTTGCAGAAATATGAATATGTGGC
1 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* *
13200784 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
66 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* *
13200849 CTGCCCGCCCGCCCGCTCGTTTCGTCGGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
131 CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** ** * *
13200914 TCAGACTGGACCGAGGGTCACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
196 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
* * ** *
13200979 CTTTGTTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAATGGCGGCATTTGGGTTCCGAC
261 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCA-TTGGGTTCCGAC
* * * * *
13201044 AATTGGGGGGGTCAGGGTGGGGTGTGCACACATGATGTGTGATGGGTGCTTGTACTTGGCCCTTA
325 AATCGGGGGGG-C-CGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
13201109 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
387 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
13201174 TACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACA
452 TACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
13201239 AAATCTTGTACACTTTGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATC
517 AAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* **
13201304 ACGTCTACAAAGTTTGGGGCCAAATA-TCCTTCTGAAAAAATTTTAAAAAATATCGAACCGTAAA
581 ACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAA
*
13201368 AAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
645 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
13201433 AAG
710 AAG
* *
13201436 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGAC
1 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * *
13201501 TAAACCCACCTACCACCCTATGGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGTGTAATGC
66 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-
* * * **
13201566 CCTCCCGACCGTCCGCCCGCCCGCTCATTTGGTCGGTTGGCTTAGGCATGCGGAGAACATTCCCA
130 CCT---G--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * *
13201631 GACTAAGATCGGACCAGACCGAGGTTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCC
188 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * * * *
13201696 GCATTTTTCTTCACCGGGGCACCATCGTCTGAGCATCGCCGGAGAACTTGACCGGCGACATTAGG
253 ACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATT-GG
* *
13201761 GTTCCGGCGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
317 GTTCCGACAATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
13201826 CCCTAATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTGG
381 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
13201890 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGGCACTATTTTCAAACG
446 AGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* ** * *
13201955 GTAACAAAATCTTGTATGCTTCGAGTTTTTTGCTGATTTTTTTGTGCATGCCAACAACAATACAA
511 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAACAAAAATACAA
* * ** *
13202020 GGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTCGAACCG
576 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
13202085 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGTGTCGTCTTGCCATGAAACTTCACATGAAG
641 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
13202150 GCTTAAG
706 GCTTAAG
* *
13202157 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCC
1 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
13202222 AAAAACCCACCTACCACCCTATCGACCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
66 -TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * * * *
13202287 CCCGCCCGCCCACTCGCTCGTTTGGTCGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTACG
130 CCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
13202352 ATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGAATGTGCTGGTGTCACATTTT
195 ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
* * * * * *
13202417 TCTTCATCGGGGCACCATCGTTGGAGCATCACCGGAGAACCTAATCGGTA-GG-ATTAGGGTTTC
260 TCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA-CCG-ACGGCATT-GGGTTCC
* *
13202480 GACAATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
322 GACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
13202545 TATTGGCCCCCTATCCCTCATTAAATCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTT
387 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
13202609 TACAGGTTTGCTT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGTTCAC
452 TACAGGTTTG-TTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
13202673 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGTTTGTGCATGCCAACAAAAATACAAGGA
516 AAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTT-TTTGTGCATGCCAACAAAAATACAAGGA
* * *
13202738 TCACGTCTACCAAGTTTGGGGCCAATACTCCTTC-CAAAAATATTTTAAAAAATCCCGAACCGCA
579 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAAATCCCGAACCGTA
* * * *
13202802 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGC
643 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
13202867 TTAAG
708 TTAAG
13202872 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
1 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
*
13202937 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-
66 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * *
13203001 CTCGCCCGCCTGCCTGCCCACTCATTTTGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTC
131 CT-GCCCG-C--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
13203066 TAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGGTGGACTCGGGCATGTGCTGGTGCCATA
191 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
* * ** * **
13203131 TTTTTCTTTGCCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACAACATTGAGGTT
256 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG-GGTT
** ** *
13203196 CCGATGATCGGGGGGGCTAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
320 CCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
13203261 TATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGAT
385 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* ** *
13203326 TTTACAGGTTTGTTGCCAGTAGCTATTAAAGTGTCAAAAATGGGGAAACTTTTTTCAAATGGTCA
450 TTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
13203391 CAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTATTTTCTGCATGCCAATAAAAATACAAGGA
515 CAAAATCTTGTACACTTCGAGTTTTTAGCTGATTT-TTTTGTGCATGCCAACAAAAATACAAGGA
* * *
13203456 TCATGTCTACCAAGTTTGGGGCCAAAACTGCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAA
579 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
* * *
13203521 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTAAAGGCT
644 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
13203586 TAAG
709 TAAG
* ** * * *
13203590 GGACCATTGTATGAAATTACAAGCCACGAAAATGGCATTGGCATGTAGAAATATGAATATTTGCC
1 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * * *
13203655 TAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCTCGTCTCTATGGTCGACGTAGTGC
66 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * *
13203720 CTGCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAATCTAAGA
131 CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** *
13203785 TCAGACCAGACCGAGGGTTGGGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGTAATTTT
196 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
* *
13203850 CTTCGTCGGGGCACCATTGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGCGGTTCC-AG
261 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG-GGTTCCGA-
** * * * *
13203914 TGATCGAGGGGGCCTGGGGGATGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGGCCTTAT
324 CAATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
13203979 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTT
388 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
13204044 ACAGTTTTGTTGCCAGTAGCCATTAAAGTGTCT-ATAAT-GGGACATTTTTTTCAAATGGTCACA
453 ACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACA
*
13204107 AAATCTTGTACACTTTGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATC
517 AAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
13204172 ACGTCTACAAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCGAAACTGCAAA
581 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG-AACCGTAAA
*
13204237 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTT
645 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
13204302 AAG
710 AAG
**
13204305 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
1 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
13204370 TAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTTTCTGGCCGGTGTAGTGC
66 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * *
13204435 CCGCCCGCCCGCCCGACCGCTTGTTTCGTCGGTTAGCTTAGGCATATGGAGTTCATTCCCAGTCT
131 CTGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
13204500 AAGATCGGACTAGACCAAGGGTTACAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACAT
192 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
* * * * *
13204565 TTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGGAGAACTTGACCGACGGCATTGGGGTTC
257 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATT-GGGTTC
* * **
13204630 CGACAATCGGGGGGGTCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGAAC
321 CGACAATCGGGGGGG-CCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
13204695 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCCTTAAAGAGCATTTGAGA
384 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* **
13204760 TTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATTATC
449 TTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
13204825 AAAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTT-T--ATGCCAACAAAAATACAAGGA
514 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGA
*
13204887 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAATAT--CGAACCGTA
579 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA-ATCCCGAACCGTA
** **
13204950 AAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
643 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
13205015 TTAAG
708 TTAAG
* ** *
13205020 GGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCAAACAGATATATGAAGATGTGCC
1 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * * *
13205085 TAAACTCACCTATCACCCTATCGATCCACGACTTGTGAATCCCGTCTCTCTGGCCGGCGTAGTGC
66 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * * * * * * *
13205150 CCGTCCGCCCGTCCGTTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAACA
131 CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* *
13205215 TC-GAGCCAGATCGAGGGTTACGGCAGCA
196 TCGGA-CCAGACCGAGGGTTGCGGCAGCA
13205243 GGATCAGCAG
Statistics
Matches: 3397, Mismatches: 362, Indels: 102
0.88 0.09 0.03
Matches are distributed among these distances:
710 2 0.00
711 67 0.02
713 188 0.06
714 551 0.16
715 752 0.22
716 4 0.00
717 193 0.06
718 513 0.15
719 288 0.08
720 148 0.04
721 268 0.08
722 165 0.05
723 84 0.02
724 3 0.00
725 171 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGTTCCGACA
ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
Found at i:13205375 original size:26 final size:26
Alignment explanation
Indices: 13205346--13205398 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13205336 GTTGACTTAG
*
13205346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13205372 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13205398 G
1 G
13205399 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13206894 original size:895 final size:892
Alignment explanation
Indices: 13204483--13207017 Score: 3685
Period size: 894 Copynumber: 2.8 Consensus size: 892
13204473 TAGGCATATG
* * * * *
13204483 GAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTACAGCAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
13204548 ATGTGCTGGTGCCA-CATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGGAGAACTTGA
66 ATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
* * *
13204612 CCGACGGCATTGGGGTTCCGACAATCGGGGGGGTCGGGGGTGGTGTGCGCACATGATGTGCGATG
130 CCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG-GGTGTGCGCACATGATGTGTGATG
* * *
13204677 GGTGCTAGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCC
193 GGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
13204742 CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
** *
13204807 CACTTTTTTCAAATTATCAAAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTT-T--ATG
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-AGCTGAATTTTTTGTGCATG
13204869 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTA
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTGAAAAAATTTTA
*
13204934 AAAATAT-C-GAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
451 AAAA-ATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
13204997 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGC
515 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
13205062 AAACAGATATATGAAGATGTGCCTAAACTCACCTATCACCCTATCGATCCACGACTTGTGAATCC
580 AAACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CAATCC
13205127 CGTCTCTCTGGCCGGCGTAGTGCCCG-TCCGCCCGTCCGTTTGTTTCATCGGTTGGCTTAGGCAT
644 CGTCTCTCTGGCCGGCGTAGTGCCCGCTCCGCCCG--C--TTGTTTCATCGGTTGGCTTAGGCAT
* * * * * *
13205191 ACAGAGTTCATTCTCAGTCTAACA-TCGAGCCAGATCGAGGGTTACGGCAGCAGGATCAGCAGCA
705 ACGGAGTTCATTCCCAGTCTAAGATTGGA-CCAGATCAAGGGTTACAGCAGCAGGATCAGCAGCA
* * * *
13205255 CGTAGAGGGGGACCCGACCGATTCCCGGCTTGCAAATCCCGCCCCTCTGGCCGACTGAGCGCCCA
769 CGAAGAAGAGGACCCGACCGATCCCCGGCTTGCAAATCCCGCCCCTCTGGCCGACTGAGCGCCCA
* *
13205320 TAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
834 TAAGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * * * *
13205379 GAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * *
13205444 ATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCTTCACCGGAGAACCTGAC
66 ATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
13205509 CGACGGCATTGGGGTTCCGACGATCGGGGGGACC-GGGGGGTGTGCGCACATGATGTGTGATGGG
131 CGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* *
13205573 TGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
13205638 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCCGTAGCCATTAAAGTGTCTGGAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
*
13205703 CTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATT-TTTTGTGCATGC
* *
13205768 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAACAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAAATTTTAA
* * * * *
13205833 AAAATCCTGAACCGTATAAAGTTTTGAAAATCATGAAAAA-AAAAAATGAGTCATCTTGCCATGA
452 AAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
13205897 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG-AA
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAA
* *
13205961 CACAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCTATCCACGGCTTGCATATCCC
582 -ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA-ATCCC
* * * *
13206026 GTCTCTCTAGCCGGTGTACTGCACGCT-CGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
645 GTCTCTCTGGCCGGCGTAGTGCCCGCTCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
* *
13206090 GTTCATTCCCAGTCTAAGATTGGACCAGA-CTAAGGGTTGCAGCAGCAGGATC-GACAGCATGAA
710 GTTCATTCCCAGTCTAAGATTGGACCAGATC-AAGGGTTACAGCAGCAGGATCAG-CAGCACGAA
* * * * * * * *
13206153 GAAGAGGACTCGACCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCTGGCTGAGCGTCCGTACG
773 GAAGAGGACCCGACCGATCCCCGGCTTGCAAATCCCGCCCCTCTGGCCGACTGAGCGCCCATAAG
* * *
13206218 CTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATA
838 CTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * *
13206273 GAGTTCATACCCAGTCGAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * **
13206338 ATGTGCTGGTGCAGCATTTATCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* *
13206403 CGACGACATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCAAATGATGTGTGATGGG
131 CGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* *
13206468 TGCTGGTACTTGGGCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
13206533 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
*
13206598 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTGTTTAGCTGAATTCTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT-TTTAGCTGAATT-TTTTGTGCATGC
* * *
13206663 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCAAAAAAATTTAAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAATTTTAAA
* *
13206728 AAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** **
13206793 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGAAATTGGCATT
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAA
* * * **
13206858 GAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTTGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-AATCCCGT
* * *
13206923 CTCTCTGGCTGGCGTAGTGCCCGCCCGTCCGCCCACCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
647 CTCTCTGGCCGGCGTAGTGCCCG--C-TCCG--C-CC-GCTTGTTTCATCGGTTGGCTTAGGCAT
*
13206988 ACGGAGTTCATTCCCAATCTAAGATTGGAC
705 ACGGAGTTCATTCCCAGTCTAAGATTGGAC
13207018 TGGACCGAGG
Statistics
Matches: 1468, Mismatches: 141, Indels: 53
0.88 0.08 0.03
Matches are distributed among these distances:
893 2 0.00
894 559 0.38
895 437 0.30
896 140 0.10
897 8 0.01
898 233 0.16
899 32 0.02
901 1 0.00
902 2 0.00
903 54 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGT
GCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAATTTTAAAAAA
TCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAACAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCTCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATTGGACCAGATCAAGGGTTACAGCAGCAGGATCAGCAGCACGAAGAAGAGGA
CCCGACCGATCCCCGGCTTGCAAATCCCGCCCCTCTGGCCGACTGAGCGCCCATAAGCTCATTTC
GTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
Found at i:13207648 original size:718 final size:718
Alignment explanation
Indices: 13206272--13207749 Score: 2255
Period size: 718 Copynumber: 2.1 Consensus size: 718
13206262 CTAAGCCTAT
* * ** *
13206272 AGAGTTCATACCCAGTCGAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1 AGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
13206337 CATGTGCTGGTGCAGCATTTATCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
66 CATGTGCTGGTGCAGCATTTATCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGA
*
13206402 CCGACGACATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCAAATGATGTGTGATGG
131 CCGACGACATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCAAATGATGTGCGATGG
* * *
13206467 GTGCTGGTACTTGGGCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
196 GTGCTGGCACTTGGCCCATATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
13206532 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGAC
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
*
13206597 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTGTTTAGCTGAATTCTTTTGTGCATG
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTGTTTAGCTGAATTCTTTTGTGCATG
* * * *
13206662 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCAAAAAAATTTAA
391 CCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAAATCCTTCCAAAAAAATTTAA
* * *
13206727 AAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
456 AAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* *
13206792 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGAAATTGGCAT
521 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGAAACTGGCAC
** * *
13206857 TGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTTG
586 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTA
* * ** *
13206922 TCTCTCTGG-CTGGCGTAGTGCCCGCCCGTCCGCCCACCTGCTCGTTTCG-TCGGTTGGCTTAGG
651 TCTCTCTGGTC-GACGTAGTGCCCACCCGTCCGCCCACCCACTCATTTCGTTC-GTTGGCTTAGG
13206985 CATAC
714 CATAC
* * * *
13206990 GGAGTTCATTCCCAATCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGG
1 AGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
13207055 CATGTTCTGGTGCCGCAATTT-TCTTCGTTGGGGCACCATTGCCAGAGCATCGCCGGAGAACCTG
66 CATGTGCTGGTGCAGC-ATTTATCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTG
* * * * *
13207119 ACCGGC-AGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGAT
130 ACCGACGA-CATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCAAATGATGTGCGAT
* *
13207182 GGGTGCTGGCACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCC
194 GGGTGCTGGCACTTGGCCCATATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
** *
13207247 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGTATTAAAGTGTCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
* * *
13207312 ACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTTAAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTGTTTAGCTGAATTCTTTTGTGCA
*
13207377 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAAATCCTTCCAAAAAAATTT
*
13207442 AAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
454 -AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
* * **
13207507 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCACTGG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGAAACTGG
* * * *
13207572 CACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGATCCACGGCTTGTGCATC
583 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATC
* *
13207637 CTATCTCTCTGGTCGACGTAGTGCCCACCTGTCCGCCCGCCCACTCATTTCGTTCGTTGGCTTAG
648 CTATCTCTCTGGTCGACGTAGTGCCCACCCGTCCGCCCACCCACTCATTTCGTTCGTTGGCTTAG
13207702 GCATAC
713 GCATAC
* * *
13207708 AGAGTTCATTTCTAGTCTAAGATCAGACTGGACCGAGGGTTG
1 AGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
13207750 TGGTAGCAGG
Statistics
Matches: 683, Mismatches: 72, Indels: 10
0.89 0.09 0.01
Matches are distributed among these distances:
717 266 0.39
718 410 0.60
719 7 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (718 bp):
AGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCAGCATTTATCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGA
CCGACGACATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCAAATGATGTGCGATGG
GTGCTGGCACTTGGCCCATATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTGTTTAGCTGAATTCTTTTGTGCATG
CCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAAATCCTTCCAAAAAAATTTAA
AAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGAAACTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTA
TCTCTCTGGTCGACGTAGTGCCCACCCGTCCGCCCACCCACTCATTTCGTTCGTTGGCTTAGGCA
TAC
Found at i:13208716 original size:873 final size:874
Alignment explanation
Indices: 13206961--13216904 Score: 10717
Period size: 907 Copynumber: 11.2 Consensus size: 874
13206951 CCGCCCACCT
* * * * * *
13206961 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGACCGA
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGA---GACCTA
* * * * *
13207026 GGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTTCTGGTGCCGCAATTTTCTTCGTTGGGGCAC
62 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
* * * * *
13207091 CATTGCCAGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATTGGGGGGGCC-
127 CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCA
* * *
13207155 GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATAGTGGCCCCCTATCC
192 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
13207220 CTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
257 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
** *
13207285 GTAGGTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTT
322 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * *
13207350 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTA
387 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * ** *
13207415 GGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATG
452 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
13207480 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
517 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
13207545 ATTTACAAGCCATAGAAATGGCACTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGCC
582 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** * * * * * *
13207610 ACCCTATTGATCCACGGCTTGTGCATCCTATCTCTCTGGTCGACGTAGTGCCCACCTGTCCGCCC
647 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCC
* * * * * * **
13207675 GCCCACTCATTTCGTTC-GTTGGCTTAGGCATACAGAGTTCATTTCTAGTCTAAGATCAGACTGG
712 GCCCGCTCGTTTC-ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
13207739 ACCGAGGGTTGTGGTAGCAGGATGGGCAGCATGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCG
776 ACCTAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* *
13207804 CATCTCGCCCCTCTGGCCGGCTGAGCACCCACAC
841 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
*
13207838 GCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCTAGGGT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCTAGGGT
* *
13207902 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATC
66 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
* * * * **
13207967 GCCGGAGCATCGCCAGAGAACTTGACCGGCGGCATTGGGCTTCCGTTGATCGGGGGGGCCAGGGG
131 GCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGG
* * * * * *
13208032 CGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCACTTATATTGGGCCCCTGTCCCTCA
196 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
13208097 TCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-GACCAGTA
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTA
* * * *
13208161 GCCATTAAAGTGTCTGAAATTGGGACACTTTATTCAAACGATCACAAAATCTTGTACACTTTGCA
325 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG-A
* * *
13208226 -TTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
389 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
13208290 GCCAAAACTCCTTCGGAAAAAATTTGAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCATG-A
454 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
*
13208354 AAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
519 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * **
13208419 TTACAAGCCATAGAAATGGCATAGGCGGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
584 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * *
13208484 CCTATTTGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCACCCACCCTCCCG
649 CCTA-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCG
* * * *
13208549 CCCGCTCGTTTCGTCAGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
713 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * *
13208614 CTAGGGTTGCAGTAGCAGGATCAGCAGCACGTAGAAGGGGACCCGGTCGATCCCCGGCTTGCACA
778 CTAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
* *
13208679 TCCCGCCCCTCTGGCCGGCTGGGCGCCCGCAC
843 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* *
13208711 GCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-AG------
*
13208776 CCCAGTCTAAGATCAAATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
57 ---A--C------C---T-------AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** * * *
13208841 TGTCATATTTTTCTTC-CCTTGGGCACCAT---C---G--T---CGGAGAACCTGACCGAC-GAA
101 TGCCGCATTTTTCTTCATC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCA
*
13208893 TTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
165 -TTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
13208958 ACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAG
229 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
13209023 CACTTGAGATTTTATAGG--TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
294 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
13209086 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGGGCATGCCAACAAA
359 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * ** *
13209151 AATACGAGGATCACGTCTACAAAGTTTGGATCCAAAACTCC-TCGCGAAAAAATTTTAAAAAGTC
424 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CGAAAAAATTTTAAAAAATC
* * * * * * *
13209215 CCGAACCATAAAATGTTTCAAAAATTGTGAAAAACAAAAAACGAGTCGTCATGCCATTAAACTTC
488 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
13209280 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGAAGAA
553 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * *
13209345 ATATGAAGATGTACCTAAACCTACCTACCACCTTATCGATCCACGGCTTGCGCATCCCATCTCTC
618 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *** *
13209410 TGGCCGGCGTAGTGCCCGCCCGCCCACCCATACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
683 TGGCCGGCGTAGTGCCCGCCCGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * *
13209475 GTTCATTGCTAGTCTAAGATCAGACCAGACCGA-GGTTGC-------GG--C---AGCATGCAGA
748 GTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGA
* * * * ** * * *
13209527 GGGGGACCCAGTCGATCCCCGGCTTGCACAACTCGTTCCTCTGGTCGGCTGAGCGCCCGTAC
813 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * * * **
13209589 GTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGA-AGTTCA-
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGAGACCT-AG
* * ** ** * * * *
13209652 --TTCCGAGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCGGACTGG-ACCG-AGGGTTGT
63 GGTTGCG-G-C--AGCACATGCTGGGC---T-CGGGC-ATG-T--G-CTGGTGCCGCA---TT-T
** ** * * * * * * *
13209713 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATC-GAGGCACCATCG-
111 TTC--TTCAT-CGGGGCAC---CAT-CGCCGGAG-C--A----TC-GC--CGGA-GAACC-T-GA
* * * * * **
13209776 TCGA-AGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGGCGATCGGGGGGTCGGGTGG
156 CCGACGGCATTG--GG-G----T-TCCGAC-G-ATCGGGG----GG-G--C-CAGGG--GGGT--
*
13209840 GGTGCACGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
199 -GTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
13209905 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGTCGGTGG
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
13209970 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
326 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
* * * * ***
13210035 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTTTTCCAAGTCCAGGGC
391 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
13210100 CAAAACTCCTTCCGACAAAATTTTAAAAAATCTCGAAACATAAAAAGTTTTAAAAATCGTGAAAA
456 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * *
13210165 ATAGAAAATGAGTCGTCTAGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATAT
521 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
13210230 ACAAGCCATAAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACC
586 ACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
13210295 CTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGTGTAGT----GCCCGCCCACCCGCC
650 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCGCC
* * * **
13210356 CGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CT
715 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCT
* * * * * * * *
13210420 GAGGGTTACTGCAATAGGATCGGTAGCACACAGAGGGGGACCTGGTCGATCCTCGGCTTACGCAT
780 -AGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT
*
13210485 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
844 CCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * *
13210516 GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA---GACCTA
* * *
13210581 AGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---
62 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
** * * * *
13210643 CA----C----CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTTGGCGATCGAGGGGCCCG
127 CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCA
* * *
13210700 GGGGGGTGTACGCACATGATGTGCGATGGGTGTTGGTATTTGGCCCTTATATTGGCCCCCTATCC
192 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
13210765 CTCATCAAACCTCAAGAACTCACACCCCCTTAACGAGCATTTGAGATTTTACAGGTTTGCTGCCA
257 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
13210830 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
322 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * *
13210895 GAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTTCCAAGTTTG
387 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * **
13210960 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATAATG
452 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
13211025 AAAAATAGAAATCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
517 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
13211090 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACC
582 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
13211155 ACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTC
647 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CT-
* * * * *
13211220 GCCCGCCCGCTCGTTTCATCGATTGGCATAGGCATACAGACTTCATTCCCAGTCTAAGATCATAC
709 -CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
13211285 CGGA-CTGAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCAGCT
773 CAGACCT-AGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
* * ** *
13211349 TGCACATCCCACCTTTCTAGCCGGCTGAGCACCCGCAC
837 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* *
13211387 GCCCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T---AAG------
* * *
13211452 CCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGCACATACTGGGCTTGGGCATGTGCTGG
51 ---A-TC---GA---GACC---T--AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
13211517 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCAT-GAACC-GAGAACCTGACCGGCGGC
101 TGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCG--CCGGAGAACCTGACCGACGGC
* * * *
13211580 ATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATTATGTGCGATGGGTGCCGGT
164 ATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *** *
13211644 ACTTGGCCCTTATATTAGCCCCCTCTTTGTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAG
229 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
13211709 CATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAATGTCTAAAATGGGGACATTTTTTT
294 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
** * *
13211774 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTGTGCATCCCAACAAA
359 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
13211839 AATAGAAGGATCACGTCTCCCAAGTTTGGGTCCAAAACTCCATCCGAAAAAATTTTAAAAAATCC
424 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
13211904 CGAACCCTAAAAAGTTTAAAAAATCGTGAAAAATACAAAACGAGTCGTCTCGCCATGAAACTTCA
489 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
13211969 CGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
554 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
13212034 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCT
619 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * * *
13212099 GGCCGGTATAGTGCCCACCCACCCGCTCGCCCGCCCACTCGTTCCATCGGTTGGCATAGGCATAC
684 GGCCGGCGTAGTGCCCGCCC-GCC-CT--CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * ** **
13212164 GGAGTTCATTCCCAGTCTAAGATCAGATCAGA-TTGAGGGTTGTTGT-GTAGGATTAGTAGCACG
745 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGCGGTAGTAGGATCGGTAGCACG
* * * * * * *
13212227 TAGAAGGGGACCCGATCGATCCCCGGCTTGCCCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCA
809 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
13212292 C
874 C
* *
13212293 GCTCGTTTCATGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GAG---A--
* * * *
13212358 CCCAGTTTGAGATTGGACCACACCGAGGGTGACGGCAACACATGCTGGGCTCAGGCATGTTCTGG
58 -CC----------T-------A--G-GGTTG-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * * ** * *
13212423 TGCCGCATTATTCTTCACCGAGGCACCATCGTCGGATCATCGTCGGGGAACCTGATTGTCAGCAT
101 TGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
* * * * *
13212488 TAGGGTTTCGACGATCGGGGGGGCC-GAGGAGGTGTGCGCACATGATGTACAATGGGTGCTGGTA
166 TGGGGTTCCGACGATCGGGGGGGCCAG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
13212552 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
230 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
13212617 ATTTGAGATTTTACAGGTTTGTTGCCATGT-GCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
295 ATTTGAGATTTTACAGGTTTGCTGCCA-GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
**
13212681 CAAATGGTCACAAAATCTTGTACACTAAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
359 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
13212746 AACACAAGGATCACGTCTACCAA------GGCCAAAACTCCTTTCGAAAGACTTTTAAAAAATCT
424 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
13212805 CGAACCGTAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
489 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
13212870 CGTGAAGGCTTAGGGGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
554 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
13212935 TATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
619 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
13213000 GGCCGGCGTAGTGCCCACCCGCCCGT-CCGTCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGA
684 GGCCGGCGTAGTGCCCGCCCGCCC-TCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * ** * * * * * *
13213064 GTTCATTCCCAGTCTAAGATC-GAACTAGGCC-AACGCTACTGCAGTAGGATCGGCAGCACCCAG
748 GTTCATTCCCAGTCTAAGATCAG-ACCAGACCTAGGGTTGCGGTAGTAGGATCGGTAGCACGCAG
* * * *
13213127 AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGACTGAACACCCGCAC
812 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* *
13213190 GCTCATTACGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATACGGAGTTCATT
1 G--C--T-C----G-T---TT---CAT--GG-G-T--TGA-C--T-TAGGCATACGGAGTTCATT
* * * * * *
13213255 CCCAATCTAAGATCAGGCCAGACCGAGGGTTACGGCAGCACAAGCTGGGCTTGGGCGTGTGCTGG
40 CCCAGTCTAAGATC--G--AGACCTAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * ** *
13213320 TGCCACATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGGAGAACCTGACCGATGGCAT
101 TGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
* *
13213385 TGGGGTTCCGACGATCGGGGCGGCC-GGGGGGTGTGCGCACAT-ATGTGCGATGGGTGCTGGTAT
166 TGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
13213448 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
231 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * * *
13213513 TTTGAGATTTTACAGGTTTGCTGCCAGTAGGCACTAAAGTTTCTGAAATGGGGACACTGTTATCA
296 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
** * *
13213578 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGTGAATGCCAACAAAAA
361 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
13213643 TACAAGGATCATGTCTACCGAGTTTGGGGCCAAAACTTCATCTGAAAAAATTTTAAAAAATCCCG
426 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
*
13213708 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
491 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
13213773 TGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
556 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * *
13213838 TAAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTATCTCTGG
621 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * *
13213903 CCGACGTAAT----GCCCG-CCT---GGCCGCTCATTTCATCGGTTGGCATAGGCATACGAACTT
686 CCGGCGTAGTGCCCGCCCGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
*
13213960 CATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTACGGTAGTAGGATCGGTAGCACGCAGAGG
751 CATTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGG
* * * ** * *
13214024 GGGACCCGG-CTGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCAC-GTTGAGCACTTGGAA
815 GGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CGGCTGAGCACCCGCAC
*
13214084 GCTCGTTTTATGGGTTGACTTAGGCATACAGAGGTCATTCCCAGTCTAAGCATACGGAGTTCGTT
1 GCTCGTTTCATGGGTTGACTTAGGCATAC---GG--------AG--T-----T-C--A-----TT
* * * * *
13214149 CCCAGTCTAACATCGAATCGGACCAAGGGTTGTGGTAGCACATACTGGGCTCGGGCATGTGCTGG
40 CCCAGTCTAAGATCG-A---GACCTAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * ** ** *
13214214 TGCCGCATTTTTCTTCGTCGAGGTACCATCGTCGGAGCATCAACAAAGAACCTGACCGACGACAT
101 TGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
* * * * * *
13214279 TGGAGTTCTCG-CGATCGGGGGGG-CTGAGGGGGTGTGCGCGCATCATGAGCGATTGGTGCTGGT
166 TGGGGTTC-CGACGATCGGGGGGGCCAG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
13214342 ACTTGGCCCTTATA-TGAGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
229 ACTTGGCCCTTATATTG-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
13214406 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTT
293 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
13214471 TCAAATGGTCACAAAATCTTGTACAC-TTCATGTTTTTACCTAAATTTTTTTGTGCATGCCAACA
358 TCAAATGGTCACAAAATCTTGTACACTTTGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
13214535 AAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCTGAAAAAATTTTAAAAAAT
422 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
** *
13214600 CCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTT
487 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
13214665 CACGTGAAGGCTTAAAGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACGCAGA
552 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
13214730 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCT
617 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** * * *
13214795 CTGGCCGGTATAGTGCCTGCCCGCCCGTTCGCCCGCCCACTC-ATTCTATCGGTTGGCTTAGGCA
682 CTGGCCGGCGTAGTGCCCGCCCGCCC--T--CCCGCCCGCTCGTTTC-ATCGGTTGGCTTAGGCA
* * ** * *
13214859 TACAGAGTTCATTCCCAGTCGAAGATCAGATTAGACCGAGGGTTGCGATAGTAGGATCGGTAGCA
742 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGTAGTAGGATCGGTAGCA
* * * * * * *
13214924 CGCAGAGGGGGACCCAGTCAATCCTCGGCTTGGGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTG
807 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
13214989 CAC
872 CAC
* *
13214992 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCATTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAG-------------T-----T-C--A-TTC---
* *
13215057 CCTAGTCTAAGATCG-GACCACATCGAGGGTTCCGGCAGCACATGCTGGGCTCGAGCATGTGCTG
41 CC-AGTCTAAGATCGAGA-C-C-T--AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
13215121 GTGCCGCATTATTCTTCACCGGGGCACCATCGCCCGAGCATCGTCGGAGAACCTGACCTACGGCA
100 GTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCA
* * * *
13215186 TTGGGGTTCTGACGATTGGGGGTGCCAGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
165 TTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
13215251 CTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGC
230 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * ** * *
13215316 ATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATATGGATAATTTTTTC
295 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
13215381 AAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
360 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
13215446 ATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACT-CTTCCAAAAAAATTTTAAAACATCCC
425 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
13215510 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAT
490 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
13215575 ATGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
555 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
13215640 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTG
620 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * ** * *
13215705 GCCAGCATAGTGCCCGTTCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGT
685 GCCGGCGTAGTGCCCGCCCGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * * *
13215766 TCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAG
750 TCATTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAG
* * * *
13215830 GGGGACCCAGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGACTGAGCACCCGCAC
814 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* ** * *
13215891 GCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCGTTCCCAGTCTAAGATC-AGACCAGAATG
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACC----T-
* * *
13215955 AGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTGC-TCGTCGGGGC
61 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCATCGGGGC
* * * * * * **
13216019 ACCATCGCTGGAGCATTGCTGGAGAACCTGATCGACGACATTGGGGTTCCGATGATC-GGGCAGC
125 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
13216083 C-GGGGGGTGTGCGCACAT-ATGTGCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCCTAT
190 CAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
13216146 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGC
255 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
13216211 CAGGT-GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
320 CA-GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** * * *
13216275 TAAGTGTTTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAACACAAGGATCACGTCTACCAA--
384 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
13216338 ----GGCCAAAACTCCTTTCGAAAAACTTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATT
449 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
13216399 GTGAAAAACAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
514 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
13216464 TGATTTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
579 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * *
13216529 ACCACCCTATCGATCCACGGCTTACGTATCCGGTCTCTCTGGTCGACTTAGTGCCTGCCCGCCCG
644 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-
* * *
13216594 T-CTGTCCC-CTCG-TTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
708 TCCCG-CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * ** * * * * *
13216656 TCGGGCCAACGGTTGCGACAGTAAGATCGGCAGCACCCAGAGGGGGACCTGGTCGATCCCCGACT
772 CCAGACCTAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
* ** *
13216721 TGCGCATCCCTCCCCTCTGGCCAACTGAGCTCCCGCAC
837 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * *
13216759 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACATA
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA---GACCTA
* * * *
13216824 GGGTTGCGACAGCAAATGCTGGGCACGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAC
62 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
*
13216889 CATCGCCAGAGCATCG
127 CATCGCCGGAGCATCG
13216905 TCGGGGGGGT
Statistics
Matches: 7721, Mismatches: 981, Indels: 739
0.82 0.10 0.08
Matches are distributed among these distances:
847 3 0.00
848 1 0.00
849 1 0.00
850 1 0.00
851 9 0.00
854 1 0.00
855 3 0.00
856 3 0.00
857 1 0.00
858 1 0.00
859 2 0.00
860 4 0.00
861 2 0.00
862 2 0.00
863 97 0.01
864 371 0.05
865 220 0.03
866 3 0.00
867 7 0.00
868 258 0.03
869 14 0.00
870 219 0.03
871 207 0.03
872 258 0.03
873 647 0.08
874 9 0.00
875 6 0.00
876 4 0.00
877 53 0.01
878 115 0.01
879 7 0.00
880 5 0.00
881 7 0.00
882 1 0.00
883 2 0.00
884 3 0.00
885 1 0.00
886 4 0.00
887 7 0.00
888 6 0.00
889 18 0.00
890 23 0.00
891 293 0.04
892 139 0.02
893 202 0.03
894 203 0.03
895 240 0.03
896 469 0.06
897 294 0.04
898 11 0.00
899 173 0.02
900 20 0.00
901 459 0.06
902 2 0.00
903 4 0.00
904 70 0.01
905 8 0.00
906 212 0.03
907 1002 0.13
908 575 0.07
909 9 0.00
910 6 0.00
913 7 0.00
914 73 0.01
915 113 0.01
916 1 0.00
917 246 0.03
918 99 0.01
919 6 0.00
920 5 0.00
921 3 0.00
922 8 0.00
923 28 0.00
924 7 0.00
925 2 0.00
926 4 0.00
927 105 0.01
928 9 0.00
929 1 0.00
930 2 0.00
931 1 0.00
932 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCTAGGGT
TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
GCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCGCCC
GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTA
GGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCACCCGCAC
Found at i:13208771 original size:26 final size:26
Alignment explanation
Indices: 13208734--13208786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13208724 GATGACTTAG
*
13208734 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13208760 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13208786 G
1 G
13208787 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13209638 original size:26 final size:26
Alignment explanation
Indices: 13209609--13209688 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
13209599 TGGGTTGACT
13209609 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
* *
13209635 TAGGCATACGAAGTTCATTCCGAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
* * *
13209661 TAAGCATATGGAGTTCATTTCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
13209687 TA
1 TA
13209689 AGATCGGACT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:13210163 original size:26 final size:27
Alignment explanation
Indices: 13210116--13210173 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
13210106 TCCTTCCGAC
*
13210116 AAAATTTTAAAAAATCTCGAAACATA-
1 AAAATTTTAAAAAATCTCGAAAAATAG
13210142 AAAAGTTTT-AAAAATCGT-GAAAAATAG
1 AAAA-TTTTAAAAAATC-TCGAAAAATAG
13210169 AAAAT
1 AAAAT
13210174 GAGTCGTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.26
Consensus pattern (27 bp):
AAAATTTTAAAAAATCTCGAAAAATAG
Found at i:13211224 original size:12 final size:12
Alignment explanation
Indices: 13211207--13211232 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13211197 ACGTAGTGCC
13211207 CGCCCGCCCGCT
1 CGCCCGCCCGCT
13211219 CGCCCGCCCGCT
1 CGCCCGCCCGCT
13211231 CG
1 CG
13211233 TTTCATCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
CGCCCGCCCGCT
Found at i:13213249 original size:26 final size:26
Alignment explanation
Indices: 13213213--13213265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13213203 GTTGACTTAG
*
13213213 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAATCTAA
*
13213239 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTACCAATCTAA
13213265 G
1 G
13213266 ATCAGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAATCTAA
Found at i:13214150 original size:26 final size:26
Alignment explanation
Indices: 13214107--13214158 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13214097 GTTGACTTAG
13214107 GCATACAGAGGTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
* * *
13214133 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
13214159 CATCGAATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:13215051 original size:26 final size:26
Alignment explanation
Indices: 13215015--13215067 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13215005 GTTGACTTAG
*
13215015 GCATACGGAGTTAATTCCCATTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* *
13215041 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
13215067 G
1 G
13215068 ATCGGACCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:13218357 original size:25 final size:26
Alignment explanation
Indices: 13218322--13218373 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13218312 GTTGACTTAG
* *
13218322 GCATACGGAGTTGATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13218347 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13218373 G
1 G
13218374 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13219244 original size:26 final size:26
Alignment explanation
Indices: 13219208--13219260 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13219198 GTTGACTTAG
*
13219208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13219234 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13219260 G
1 G
13219261 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13221023 original size:26 final size:26
Alignment explanation
Indices: 13220993--13221045 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13220983 GTTGACTTAG
13220993 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13221019 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13221045 G
1 G
13221046 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13221546 original size:901 final size:898
Alignment explanation
Indices: 13217450--13221779 Score: 5618
Period size: 888 Copynumber: 4.9 Consensus size: 898
13217440 ATTGGCTTAG
* * * * *
13217450 GCATACGGAGTTCATGCCCAGTCTAAGAT-TGATTGGATCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
13217514 CTCGGGCATGTGCTGGGGCTGAATTTTTCTTCGCCGGAGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-CGGAGA
*
13217579 ACCTGACCGGCGGCATTGGGGTTCCG--GAATTCGGGGGGGTCGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACG-ATT-GGGGGGGCCGGGGGGTGTGCGCACATGATGT
* ** ** *
13217642 GTGATGGGTGCTGGTACTTCACAATTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* **
13217707 AACCCCCTTAAAGAGCATTTCAGATTTTATC-GGTTTGCTGGCAGTA-CCATTAAAGTGTCTGAA
258 CACCCCCTTAAAGAGCATTTCAGATTTTA-CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
*
13217770 ATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** ** * * *
13217834 TGTGCGTGCCAACAAAAATACAAGGATCACGTCTTGCAAGTTTGGATCCAAAACTCCTTCCGAGA
387 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAA
* * * ** *
13217899 GAATTTTAAAAAATCAT-GAACCATAAAATGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGT
452 AAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
13217963 CTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTGCAAGCCAT-AAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13218027 GCATTTGCACGCA-AAA-ATAAATGATGTGTCTAAACCCACCTACCATCCTATCGATCCACGGCT
581 GCATTGGCACGCAGAAATATAAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
13218090 TGAGCATCACGTGTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCACCCACTCTTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CCCGCTCGTTTCGTCGGT
* ** * * *
13218155 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATTGGACCAGACCAAGGGTTCCGGCAGCAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAG
** * * * *
13218220 GATCGGTAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCATTTGGCCAG
771 GATCGACAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
13218285 CTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATT-CCAGTCTAA
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13218347 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-ATCGAGGGTTGCGGCAGCACATGCTGG
* *
13218411 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCA---TC---G--T--CGGAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCGGAGA
** ** * *
13218466 ACCTGACCGGTAGCATTGGGGTTCCGACGATCAGGAGGGCTGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
13218531 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAAAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
13218595 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTACCAGTAGCCTTTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
13218660 GGGACACTTTTTTCAAATGGTCACAAAAAT-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * **
13218724 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGCTTGGGGCCAAAACT-CCTACTGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAA
* *
13218788 ATGTTTTAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AT-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
13218853 TGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13218918 ATTGGCACGTAGAAATATGAAA-ATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
583 ATTGGCACGCAGAAATAT-AAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * *
13218982 CGCATCCAATCTCTCTAGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * ** * *
13219047 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-AGGGGTTGCGATAGCAGGACCG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTACGGCAACAGGATCG
* * * * *
13219111 ACAGCATGCAGAGGGGGACCCGATCGAT-CCTCGGTTTGCGCAGCCCGCCCTTCTGGCCGGTTGA
776 ACAGCACGCAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
13219175 GCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13219234 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATC-AGATCGAGGGTTGCGACAGCACAAGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-ATCGAGGGTTGCGGCAGCACATGCTGG
* * **
13219298 GCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-CGGAG
* * * * * * *
13219363 AACCTGACCGGTGGCATTGAGGATCCGTCGATCGGGGGGGTCGGGGGGTGTGTGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
13219428 CAAAGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
13219493 ACCCCCTTAAAAAGCAATTGC-GATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
259 ACCCCCTTAAAGAGC-ATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
*
13219557 TGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** * *
13219622 ATGCATGCCAACAAAAATACAAGTATCATGTCTACCAAGTTTGGATCCAAAACTCCATGCAAAAA
388 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAA
* *
13219687 AATTTTAAAAAATC-CTGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGACTCGTC
453 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
13219751 TTGCCATGAAGCTTCACGTGAAGGGTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
13219815 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** ** * *
13219879 CGCCTCCCGTCTCTCTGGCTGGTATAGTGCCCGCTTGCCCGCCCGCTCGTTTCATCGATTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * ** * * *
13219944 AGCCGTACGAAGTTCATTCCCCGTCTAAGATCAGATTAGATCGAGGGTTGCGGCAGCAGGATCGA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCGA
* * ** *
13220009 CAGCACGCAGAAAGGGG-CCCGATCGATCCCCGGCTTGCGCATCAGGCCCCTCTGGCTGGCTGAG
777 CAGCACGCAG-AGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* **
13220073 CGCCCGCACGCTCGTTTCGTGGGTTGACTTTGAAATACGGAGTTCATTCCCAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
13220131 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCACATGCTGGG
*
13220196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCA---T-----CA-C-CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCGGAGAA
* * * * * * *
13220251 CTTGACCGACGGCATTGGGATTTCGATGA-TCGGGCGGCCGGGGGGTGTGCGCACAT-ATGTGCG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
13220314 ATTGGTGCTGGTACTTGGCCCTTATATTAGCCCTCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
13220379 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
* *
13220444 GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* * *
13220508 CATGCCAACAAAAATCCAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCCTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAAT
* * ** * * * * *
13220573 TTTAAAAAATCCCAAATTGCAAAAAGTTTCAAAAATCGTGGAAGATAGAAAACAAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
13220638 AATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
13220703 GGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACAGCTTGTGCA
586 GGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
13220768 TCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTTTCGCTTGTTTCGTCGGTTAGCTT
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC---CGCTCGTTTCGTCGGTTGGCTT
* * * * *
13220833 AGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAACA-GATGGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCGA
* * * * * * *
13220897 CAGCACGTAGAGGGGGACCTGGTCGATCTCTGGCTTACGCATCTCGCCCCTCTGGCCGGCTGAGT
777 CAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
13220962 GCCCCCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
13221019 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13221084 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCGCAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGC-GGAGA
* * *
13221149 ACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
**
13221214 CGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
13221279 ACCCCCTTAAAGAGCATTTCAGATTTTACAGG-CTGCTTCCAGTAGCCGTTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
*
13221343 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * **
13221407 TACATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCTTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAA
*
13221472 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* **
13221537 GTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
13221602 TTGGCACACATAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** *
13221667 CATCCCGTCTCTCTGGCCGGCGTATTGCCCTCCCG-TTG---GCTCATTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
*
13221728 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGC
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGC
13221780 TGCACATGCT
Statistics
Matches: 2985, Mismatches: 385, Indels: 130
0.85 0.11 0.04
Matches are distributed among these distances:
883 186 0.06
884 197 0.07
885 82 0.03
886 268 0.09
887 224 0.08
888 407 0.14
889 89 0.03
890 77 0.03
891 3 0.00
892 4 0.00
893 69 0.02
894 1 0.00
895 2 0.00
896 2 0.00
897 359 0.12
898 234 0.08
899 299 0.10
900 21 0.01
901 322 0.11
902 139 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCGACAGC
ACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13222607 original size:26 final size:26
Alignment explanation
Indices: 13222578--13222627 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13222568 GTTGACTTAG
13222578 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
13222604 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
13222628 AAGATCGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:13223972 original size:714 final size:715
Alignment explanation
Indices: 13222604--13224055 Score: 2220
Period size: 714 Copynumber: 2.0 Consensus size: 715
13222594 CCCAGTCTCA
* ** *
13222604 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATTGAGGGTTGCGGCAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCTCATGCTGGG
* * * **
13222669 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * *
13222734 ACCTGACTGACAGTATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACTGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCACACATGATGTAC
*
13222799 GATGGGTGCTGGTACTTAGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTGAAGAACTCACA
196 GATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAAGAACTCACA
13222864 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTATCTAAAATG
261 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTATCTAAAATG
*
13222929 GGGACACTTTTTTCAAATCATCACAAAATCTTATACACTTCGAGTTTTTAGCTAAATTTTTTTGT
326 GGGACACTTTTTTCAAATCATCACAAAATCTTATACACTTCGAGGTTTTAGCTAAATTTTTTTGT
* *
13222994 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGATAAAAATCATTCCGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAACCATTCCGAAAAAA
* ** * * *
13223059 TTTTAAAAAATCTCAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAAGAGTCATCTTG
456 TTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAAAGAGTCATCTGG
13223124 CCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
13223189 TGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGC
586 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGC
* * ** * *
13223254 ATCCCGT-TTCTCTGGTCGGCGTAGT-GCTTGACCGCCCGCTTGCTCGTTTTGTCGATTGGCTGA
651 ATCCCGTCTCCT-TGGCCGGCGTAGTCGCCCGACCGCCCGCCTGCTCGTTTCGTCGATTGGCTGA
13223317 G
715 G
13223318 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAT-ATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGC-TCATGCTGG
* * *
13223382 GCTTGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCACCGGAGTATCG-CTGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTC-GGA
* *
13223446 GAACCTGACCTG-CGGCATTGGGGTTCCGGA-GATCGGGGGGGCCGGGGGGTATGCACACATGAT
129 GAACCTGA-CTGACAGCATTAGGGTTCC-GACGATCGGGGGGGCCGGGGGGTATGCACACATGAT
*
13223509 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAAC
192 GTACGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAAGAAC
* * * *
13223573 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTT
256 TCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTATCTA
** * *
13223638 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGAAA-TT
321 AAATGGGGACACTTTTTTCAAATCATCACAAAATCTTATACACTTCGAGGTTTTAGCT-AAATTT
* * *
13223702 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACACCATT-C
385 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAA-ACCATTCC
* * *
13223766 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
449 GAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAAAGAGT
* *
13223831 CGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CATCTGGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
13223896 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
579 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGA
*
13223961 CTTGCGCATCCCGTCTCCTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCG
644 CTTGCGCATCCCGTCTCCTTGGCCGGCGTAGT---CGCCCGACCGCCCGCCTGCTCGTTTCGTCG
* *
13224026 GTTGGCTTAG
706 ATTGGCTGAG
13224036 GCATACGGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
13224056 ACCTAAGAAT
Statistics
Matches: 668, Mismatches: 58, Indels: 20
0.90 0.08 0.03
Matches are distributed among these distances:
713 1 0.00
714 597 0.89
715 18 0.03
718 52 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (715 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCTCATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACTGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCACACATGATGTAC
GATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAAGAACTCACA
ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTATCTAAAATG
GGGACACTTTTTTCAAATCATCACAAAATCTTATACACTTCGAGGTTTTAGCTAAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAACCATTCCGAAAAAA
TTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAAAGAGTCATCTGG
CCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGC
ATCCCGTCTCCTTGGCCGGCGTAGTCGCCCGACCGCCCGCCTGCTCGTTTCGTCGATTGGCTGAG
Found at i:13224231 original size:26 final size:26
Alignment explanation
Indices: 13224195--13224247 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13224185 GTTGACTTAG
*
13224195 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13224221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13224247 G
1 G
13224248 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13224741 original size:26 final size:26
Alignment explanation
Indices: 13224705--13224757 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13224695 GTTCACTTAG
*
13224705 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
13224731 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
13224757 G
1 G
13224758 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:13225636 original size:26 final size:26
Alignment explanation
Indices: 13225600--13225652 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13225590 GTTGACTTAT
* *
13225600 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13225626 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13225652 G
1 G
13225653 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13230015 original size:26 final size:26
Alignment explanation
Indices: 13229979--13230031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13229969 GTTGACTTAG
*
13229979 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13230005 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13230031 G
1 G
13230032 ATCCGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13230849 original size:900 final size:896
Alignment explanation
Indices: 13229116--13235228 Score: 7974
Period size: 900 Copynumber: 6.8 Consensus size: 896
13229106 GTTGACTTAG
* * * * * *
13229116 GCATACGGAGTTCATTGCTAGTCTAAGATCGGATCGGACCGAGGGTTCCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGATCGAGGGTTGCGGTAGCACATGCTGGG
* * ** * ** * *
13229181 CTCGGGCACGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCACCGAAGA
65 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
13229246 ACCTGACCGGCGGCATT-AGGTTCTGACGATC-----G--GGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
13229303 ATGGGTACTAGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACA-
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
13229367 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
13229432 GGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
13229497 CATGCCAACAAAAATACAAGTATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
390 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * *
13229562 TTTAAAAAATCCCAAACAGGAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
455 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
13229627 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATTAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAATGGCATT
* * * * * *
13229692 GGCTTGCAAAAATATGAAGATGTACCCAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCA
584 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * **
13229757 TCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCCACTCGTTTCGTCGGTTGGCTTCCGC
649 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGC
* * * *
13229822 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGATCGACACC
714 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGC
* * ** * * * * *
13229887 ATACAGAGCAGG-ACATGATCAATCCC-CAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
779 ACACAAAGGGGGCAC-TGGTCAATCCCTGA-CTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGC
*
13229950 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
13230005 GCATACGGAGTTCATTCCCAATCTAAGATCCGACCGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-CGACCGGATCGAGGGTTGCGGTAGCACATGCTGGG
* * * *
13230070 CTCGGGCATGTGCTGGTGTAGGATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
13230135 ACCTGACCGGCAGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGT
** *
13230200 AAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
13230265 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
13230330 TGGGGACACTTTTTTTAAATGGCCACACAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
13230395 GTGCATGCCAAAAAAAATACGAGGATCATGTCTAAAAAGTTTGGGGCCAAAAATCCTTTCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
** *
13230460 AATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
13230525 TGCCATGAAACTTTACGTGAAGGCCTAAGGGACCATTGTTTGAATTTACAAGCCATAAAATGGCA
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCA
** * * *
13230590 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATACACGGTTTGCG
582 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
13230655 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAG
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * ** * *
13230720 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGATTGAAGGTTGCGATAGCAGGATCGGCA
712 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
** * *
13230785 GCACGTAAAGGGGGCCCTGGCCAATCCCTGACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGC
777 GCACACAAAGGGGGCACTGGTCAATCCCTGACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGC
* * *
13230850 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAA
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
13230905 G-AT-C-G-G---------A-TC---G---GA-C----CGAGGGTTGCGGTAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGATCGAGGGTTGCGGTAGCACATGCTGGGC
* *
13230945 TCGGGCATGTGCTGGTACCA-CATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 TCGGGCATGTGCTGGT-GCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
13231009 ACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGCTCGGGGGGTGTGCGCACTTGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTGC
*
13231074 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
13231139 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
13231204 GGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
13231269 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCGTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * **
13231334 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
13231399 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCAT
* *
13231464 TGGCATGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
583 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
13231529 ATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCATGCCTGCTCGTTTCGTCGGTTAGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC---CC-GCTCGTTTTGTCGGTTGGCT
* * *
13231594 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC--A--GA---TT--G--A--AGGTTGC
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGAT-C
* * * * * * * * * *
13231646 GGTAGCACGCAGAGGGGGCCCCGGCCGATCCCCGACTTACGCATCCCGACCCTCTGGCCGGCTAA
773 GGCAGCACACAAAGGGGGCACTGGTCAATCCCTGACTTGCGCATCCCGACCCTCTGGCCGGCTGA
* *
13231711 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
838 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13231770 G-AT-C-GA----A----C---C---G---GA-C----CGAGGGTTGCAGCAGCACATTCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGATCGAGGGTTGCGGTAGCACATGCTGGGC
* * *
13231810 TCAGGCATGTGCTGGTATC-GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGC
66 TCGGGCATGTGCTGGT-GCAGCATTTTTCTTCACCGGGGCACCAT---C---G--T---CGGAGC
13231874 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGGTGTGC
119 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGC
* *
13231939 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-ATTGGCCCCGTATCCCTCATCAAACG
181 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * **
13232003 TTGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGTTATTAA
246 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
13232068 AGTGTCTAAAATGGAGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGT
311 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
13232133 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGACAAAAAT
376 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
* * * *
13232198 CC-TTCCAAAAGAATTTTAAAAAATCTCGAATCC-CAAAAAGTTT-AAAAGATCATGAAAAATAG
441 CCTTTCGAAAA-AATTTTAAAAAATC-CCAAACCGCAAAAAGTTTCAAAA-ATCGTGAAAAATAG
* * *
13232260 AAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTATAA
503 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
13232325 GCCAAAAAAATGGCATTGGCAAGGAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATC
568 GCC-ATAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
13232390 GATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCACTC
632 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTC
* * * * *
13232455 GTTTTGTCGGCTGGCTTCGGCATACGAAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGT
693 GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * ** ** * * *
13232520 TG-TAGTAGCAGGATCGATAGCACACAGTGGGGGACAC-GATCGATCCCTGGCTTGCGCATCCCG
758 TGCGA-CAGCAGGATCGGCAGCACACAAAGGGGG-CACTGGTCAATCCCTGACTTGCGCATCCCG
* *
13232583 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
821 ACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
13232648 TCCCAGTCTAA
886 TCCCAGTCTAA
* * * * ** * *
13232659 GCATACAGCGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAATAGCAAATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGATCGAGGGTTGCGGTAGCACATGCTGGG
* * ** ** ** *
13232724 CACGGGCATGTGCTGGTAACA-CATTTTTCTTCGTCAAGGCACCATCACCAGAGCATCGCCGGAG
65 CTCGGGCATGTGCTGGT-GCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
13232788 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCACAAATGATATGC
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13232853 GATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * *
13232918 CACCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCAGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
13232983 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** *
13233048 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGTTGCCAAAACTCC-TTCTAAAAAC
389 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA-
* *
13233112 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGGAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
13233177 GCCATGAAACTTCATGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCAT
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCAT
* *
13233242 CGGCACGTAGAAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
583 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * **
13233306 ATCCCGTCTTTCTGGCCGGCGTAGTGACCGCCCGCATGCCCGTCTGCTCGTTTCATCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-C--GCCCGCCCGCTCGTTTTGTCGGTTGGCT
* * * * * * * *
13233371 TAGGCATACAGACTTCATTCACAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAAGATCG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCG
*** * ** * *
13233436 GCAGCATGGAGA-GTTGTACTCGGT-AGATCCCTGGCTTGCGCATCCC-ACCCCTCTGGCCGGCT
774 GCAGCACACAAAGGGGGCACT-GGTCA-ATCCCTGACTTGCGCATCCCGA-CCCTCTGGCCGGCT
* * * *
13233498 GAGCGCCCGCACACTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCTCAGTCTAA
836 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
13233559 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGATCGAGGGTTGCGGTAGCACA---T--G
* * * *
13233624 CTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAAT-ATCGGAGCATCG
60 C-TGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACC-ATCGTCGGAGCATCG
* * *
13233688 TCGGAGAACCTGACTGGCGGCATTTGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACA
123 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACA
* * * *
13233753 TGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGTG
186 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
13233818 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
251 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
13233883 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
316 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * ** * *
13233948 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGCCTACCAAGTTTGTTGCCAAAAATCCTTC
381 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT
13234013 CGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
446 CGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
13234078 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
511 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AA
**
13234143 AATGGCATTGGCATGTAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
575 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
13234208 GCTTGCGCATCCCGTCTCTCTAGCAGGCGTAGCGCCCGCCCGCCCGCCCGTCCACTCGTTTTGTC
640 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG----CTCGTTTTGTC
* * * * * * *
13234273 GGTTGGCTTAGACATACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACTGAGGGTTGTGGCAG
701 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAG
* * * * ** * *
13234338 CAGCATCGGTAGCCCACAAAGAGGGACAC-GGTTGATCCCTAGA-TTGCGCATCCTGCCCCTCTG
766 CAGGATCGGCAGCACACAAAG-GGGGCACTGGTCAATCCCT-GACTTGCGCATCCCGACCCTCTG
*
13234401 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTC
829 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
13234466 TAA
894 TAA
* ***
13234469 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGATCGAGGGTTGCGGTAGCACATGCTGGG
** **
13234534 CTCGGGCATGTGCTGGTGCCA-CATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCGCCGGAG
65 CTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** * * *
13234598 AACCTGACAGATGGCA-TGGGGTTCCGGCGAT-AGGGGGCCGGGGGGTGTGCGCATATGATGTGC
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13234661 GATGAGTG-TCGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCAC
194 GATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
13234724 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13234789 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
13234854 TGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAGG
388 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA-A
** * * *
13234918 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGATAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
13234983 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGC
* * *
13235048 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATTGAGCCACGGCTTGC
581 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
13235113 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
* * * *
13235178 GGCGTACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
13235229 GCAACAGATA
Statistics
Matches: 4628, Mismatches: 467, Indels: 252
0.87 0.09 0.05
Matches are distributed among these distances:
864 4 0.00
865 186 0.04
866 1 0.00
868 2 0.00
870 2 0.00
871 1 0.00
872 374 0.08
873 116 0.03
874 117 0.03
875 2 0.00
876 59 0.01
877 513 0.11
878 55 0.01
879 4 0.00
881 6 0.00
883 1 0.00
884 2 0.00
886 2 0.00
887 1 0.00
888 1 0.00
889 237 0.05
890 20 0.00
891 1 0.00
892 1 0.00
895 62 0.01
896 3 0.00
897 1 0.00
898 8 0.00
899 450 0.10
900 687 0.15
901 383 0.08
902 308 0.07
903 29 0.01
904 117 0.03
905 5 0.00
906 91 0.02
907 11 0.00
908 376 0.08
909 40 0.01
910 284 0.06
911 2 0.00
912 4 0.00
915 59 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGATCGAGGGTTGCGGTAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGG
CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCAC
ACAAAGGGGGCACTGGTCAATCCCTGACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13231867 original size:11 final size:11
Alignment explanation
Indices: 13231851--13231883 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
13231841 ACCAGGGCAC
13231851 CATCGCCGGAG
1 CATCGCCGGAG
13231862 CATCGCCGGAG
1 CATCGCCGGAG
13231873 CATCGCCGGAG
1 CATCGCCGGAG
13231884 AACCTGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.36, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:13232115 original size:877 final size:861
Alignment explanation
Indices: 13226529--13235207 Score: 9882
Period size: 877 Copynumber: 9.9 Consensus size: 861
13226519 CCCAGTCTAA
* * * *
13226529 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATATGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * ** *** *
13226594 CTCGAGCATGTGCTGGTGCGGCATTTTTCTTCGCCGGGGTGCCATTGCCGGAGCAT-GCCAGAGA
66 CTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * * *
13226658 ACCTGACCGGTGACATTGGGGTTCCGGCGATCGGGGGGCTGGGGGTTGGGTGTGCACACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGG--GGGTGTGCGCACATGATG
* * *
13226723 TGCGATGAGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * * * * *
13226788 AGAACCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATTGCTATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13226853 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
13226918 TGTTCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCATCCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
13226983 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAATCGAGTCATC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
13227048 TTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
13227113 CATTGGCATGCAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
13227178 CGCATCCCGTCTCTCTGGCCGGTGTAAT--------GCCCGCCCG-TTTTTCTCGTTGGTTGGCT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT-TCGTCGGTTGGCT
* * * *
13227234 TAGGCATACGGAGTTCATTTCCAGTCTCAGATTAGACTGAACCAAGGGTTATAGCAACAGGAT-C
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATT-G---G-ACC-A--G--ATTG--A-AGGTTGC
* * * *
13227298 TGCAGCACGTC-GAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCC-ACCCCTCTGGCCGGCT
764 GGTAGCACG-CAGAGGGGGACACGGTCGATCCCCGACTTGCGCATCCCGA-CCCTCTGGCCGGCT
* * *
13227361 GAGCGCCCGCAAGCTCATTTTGTGGGTTGACTTAG
827 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * * *
13227396 GCATA-CAGAGTTGATTACCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCTAG
1 GCATATGA-AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTGG
* * ** * *
13227460 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAG
* * * * *
13227525 AACCAGACCGGCGGCACTGAGCTTCCGACGATCGGGGGGGGCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
13227590 ACAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
13227655 CACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
13227720 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
13227785 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATCATTCTAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
13227850 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13227915 TGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13227980 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGC
584 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13228045 GCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGTCTGCCCGTCCACCCGCTTGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGC-C--C-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** *
13228110 CTTAGGCATATGTAGTTCATTCCCAGTCTCAGATCAGACC-GAATTGAGGGTTACAGCAATAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG-ATTGAAGGTT---GC----GG-
* * ** * * * * * *
13228174 TCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCTTCCTG-CGTCTTTGGTCGGC
766 T----AGCACGCAGAGGGGGACACGGTCGATCCCCGACTTGCGCATCCCGAC-CCTCTGGCCGGC
** * * ** *
13228238 TGAATGCCCGTAAGCTTATTTTGTGGGTTGACTTAG
826 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
13228274 GCATATGGAGTTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATATGAAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGTAGCACATGCTGG
* ** * * * *
13228338 GTTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCAGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAG
* * *
13228403 AACCTAACCGACGGCATTGGGGTTCCGACGATCCGGGGGGCC-GGGGGGTGTCCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGAT-CGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
13228467 TCGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCCCTCATTAAA-CTTCAAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTC
*
13228531 ACA--CCC--------C----------TT-----TTT--T--CAGTAGCCATTAAAGTGTCTGTA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13228567 ATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
13228632 TGTGCATGCAAAGAAAAATACAAGGATCATGTCTACTATGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
13228697 AAATTTTACAAAATCTCGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
**
13228762 TTGCCATGAAACTTCACGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
13228827 CATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCCATCCATGGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
13228892 CGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGTCCGCACGCTCGTTTCGGCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
13228957 AGGCATATGGAGTTCATTCCCAGTCTAAGATCAAATTGGACCAAGGGTTGTGACA-GTAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAG-----ATTGGACC-A--GAT-TGA-AGGT-TG--CG
* * * * ** * * *
13229021 GCAGCACGCAGAGGGGGACCCGATTGATCCCC-AGCTTATGCGTCCC--CCCTCTAGCCGGTTGA
765 GTAGCACGCAGAGGGGGACACGGTCGATCCCCGA-CTTGCGCATCCCGACCCTCTGGCCGGCTGA
* *
13229083 GCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
829 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * *
13229116 GCATACGGAGTTCATTGCTAGTCTAAGATCGGATCGGACCGAGGGTTCCGGCAGCACATGCTGGG
1 GCATATGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * ** ** ** * *
13229181 CTCGGGCACGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGA
* *
13229246 ACCTGACCGGCGGCATT-AGGTTCTGACGAT--------CGGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
13229302 GATGGGTACTAGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
13229367 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13229431 GGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
13229496 GCATGCCAACAAAAATACAAGTATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
13229561 TTTTAAAAAATCCCAAACAGGAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
13229626 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATTAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
13229691 TGGCTTGCAAAAATATGAAGATGTACCCAAACCCACCGACCACCCTATCGATCCACGGCTTGCGC
586 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * **
13229756 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCCACTCGTTTCGTCGGTTGGCTTCCG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
13229821 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGATCGACAC
716 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAAGGTT------GC-GG-TAG-CA-
* ** * * * * * *
13229886 CATACAGAGCAGGACATGATCAATCCCC-AGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
771 C--GCAGAGGGGGACACGGTCGATCCCCGA-CTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGC
13229950 CCGCACGCTCGTTTCGTGGGTTGACTTAG
833 CCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13229979 GCATA-CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCCGACCGGA
1 GCATATGA-AGTTCATTCCCAGTCTAAG-AT-C-GA----A----C---C---G----GA-C---
*** *
13230043 TCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTAGGATTTTTCTTCACCGGG
40 -CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGG
* * * * *
13230108 GCACCATCGTCGAAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACAATCGGGGGG
104 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
** *
13230173 GCCGGGGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCG
168 GCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
13230238 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
232 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
13230303 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGCCACACAATCTTGTAC
297 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * **
13230368 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACGAGGATCATGTCTAAAAA
362 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
* * * **
13230433 GTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAA
427 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * *
13230498 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCCTAAGGGACCATTG
492 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* **
13230563 TTTGAATTTACAAGCCAT-AAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCAC
557 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* * *
13230627 CTACCACCCTATTGATACACGGTTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * *
13230692 CGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGG
687 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG
* * * * * *
13230757 ATTGAAGGTTGCGATAGCAGGATCGGCAGCACGTAAAGGGGGCCCTGGCCAATCCCTGACTTGCG
752 ATTGAAGGTTGCGGTAGC---A-C-GCAG-A-G----GGGGACAC-GGTCGATCCCCGACTTGCG
* *
13230822 CATCCCGACCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
805 CATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13230879 GCATACTG-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATA-TGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTGG
* * *
13230943 GCTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAG
* *
13231008 AACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGCTC-GGGGGGTGTGCGCACTTGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGGGGTGTGCGCACATGATGT
*
13231072 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
13231137 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
13231202 TGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
13231267 TTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCGTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
13231332 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13231397 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
13231462 ATTGGCATGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13231527 ACATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCATGCCTGCTCGTTTCGTCGGTTAG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC---CC-GCTCGTTTCGTCGGTTGG
*
13231592 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAAGGTTGCGGTAGCACGCA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAAGGTTGCGGTAGCACGCA
* * * * *
13231657 GAGGGGGCCCCGGCCGATCCCCGACTTACGCATCCCGACCCTCTGGCCGGCTAAGCGCCCGCACG
775 GAGGGGGACACGGTCGATCCCCGACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACG
13231722 CTCGTTTCGTGGGTTGACTTAG
840 CTCGTTTCGTGGGTTGACTTAG
* * *
13231744 GCATATGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCACATTCTGGG
1 GCATATGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
13231809 CTCAGGCATGTGCTGGTATCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGC
66 CTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCAT--------CAT---CGGAGC
13231874 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGGTGTGC
120 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGGTGTGC
* *
13231939 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-ATTGGCCCCGTATCCCTCATCAAACG
183 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * **
13232003 TTGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGTTATTAA
248 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
13232068 AGTGTCTAAAATGGAGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGT
313 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
13232133 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGACAAAAAT
378 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
* *
13232198 CCTTCC-AAAAGAATTTTAAAAAATCTCGAATCC-CAAAAAGTTT-AAAAGATCATGAAAAATAG
443 CCTTCCGAAAA-AATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAA-ATCGTGAAAAATAG
* * *
13232260 AAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTATAA
505 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
13232325 GCCAAAAAAATGGCATTGGCAAGGAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATC
570 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
13232390 GATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCACTC
635 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTC
* * * * * *
13232455 GTTTTGTCGGCTGGCTTCGGCATACGAAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGT
696 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-----TGGACC-A--GA
* * * * * * * *
13232520 TGTAGTAGCAGGAT-CGATAGCACACAGTGGGGGACACGATCGATCCCTGGCTTGCGCATCCCGC
753 T-T-G-A--AGGTTGCGGTAGCACGCAGAGGGGGACACGGTCGATCCCCGACTTGCGCATCCCGA
*
13232584 CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
813 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
13232633 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGCGTTCATTCCCAGTCTAAGATCAGACCAGAT
1 GCATATGAAGTTCATTCCCAGTCTAAG-AT----CG---A-----A--C------CGGACC-G--
** * * * * * ** **
13232698 CAAGGGTTGCAATAGCAAATACTGGGCACGGGCATGTGCTGGTAACACATTTTTCTTCGTCAAGG
42 --AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGG
* * *
13232763 CACCATCACCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGC
105 CACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
* * * *
13232828 C-GGGGGGTGTGCACAAATGATATGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTAT
170 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
13232892 CCCTCATCAAACCTCGAGAACTCACACACCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGC
235 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
13232957 CAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
13233022 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
** *
13233087 TGTTGCCAAAACTCCTT-CTAAAAACATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
430 TGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * *
13233151 GTGAAAAATAGGAAACGAGTCGTCTTGCCATGAAACTTCATGGGAAGGCTTAAGGGACCATTGTA
494 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
13233216 TGAATTTACAAGCCAT-AAAATGGCATCGGCACGTAGAAATATGAAGATGTG-CTAAACCCACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
* *
13233279 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGACCGCCCGCATG
624 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-C--G
* * * * * * ** *
13233344 CCCGTCTGCTCGTTTCATCGGTTGGCTTAGGCATACAGACTTCATTCACAGTCTAAGATCAGATC
685 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
* ** * * * * * * *
13233409 GGACCGAGGGTTGTGGCAGCAAGATCGGCAGCATGGAGAGTTGTACTCGGTAGATCCCTGGCTTG
750 AGATTGAAGGTTGCGGTAGC---A-C-GCAG-A-GG-G-G--G-ACACGGTCGATCCCCGACTTG
* * *
13233474 CGCATCCC-ACCCCTCTGGCCGGCTGAGCGCCCGCACACTTGTTTCGTGGGTTAACTTAGGCATA
803 CGCATCCCGA-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA
13233538 CGG
861 --G
*
13233541 AGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGAT
1 -G--CA---T-A---T--G---A---AGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGT
* * *
13233605 TGCGGTAGCACATGTTGGGCTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC
47 TGCGGTAGCACA---T--GC-TGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGC
* * *
13233670 ACCAAT-ATCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTTGGGTTCCGACGATCGGGGGGG
106 ACC-ATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* * *
13233734 CCAGGGGGGTGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATCGGCCCCCTA
169 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
13233799 TCCCTCATCAAACCTCGTGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
13233864 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
13233929 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGCCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
** * *
13233994 TTGTTGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
429 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
13234059 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
494 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
**
13234124 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATACAAAGATGTGCCTAAACCCACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
13234189 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCAGGCGTAGCGCCCGCCCGCCCG
624 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * *
13234254 CCCGTCCACTCGTTTTGTCGGTTGGCTTAGACATACAGAGTTCATTCCCAGTGTAAGATCGGACC
689 CCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
* * * * * *
13234319 AGACTGAGGGTTGTGGCAGCA-GCATCGGTAGCCCACAAAGAGGGACACGGTTGATCCCTAGA-T
750 AGATTGAAGGTTGCGGTAGCACGCA---G-AG--------G-GGGACACGGTCGATCCC-CGACT
* *
13234382 TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCAT
801 TGCGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T
13234447 ACGG
860 A--G
* *
13234451 AGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTT
1 -G--CA-T---A---T--G-A-----AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
*** * * **
13234516 GCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCA
48 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATCA
* * ** * *
13234581 CCGGAGCATCGCCGGAGAACCTGACAGATGGCA-TGGGGTTCCGGCGAT-AGGGGGCC-GGGGGG
113 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
* *
13234643 TGTGCGCATATGATGTGCGATGAGTG-TCGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCAT
178 TGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
13234706 CAAACGTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
242 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
13234771 CATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
307 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
13234836 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCC
372 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
* * * *
13234901 AAAACTCCTTCC-AAAGGAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGATAA
437 AAAACTCCTTCCGAAA-AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
*
13234965 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
501 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
13235030 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
566 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
13235095 AATTGAGCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
631 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
* * *
13235160 GTTTTGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAATCTAAGAT
696 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
13235208 CAGACTGGAC
Statistics
Matches: 6800, Mismatches: 710, Indels: 576
0.84 0.09 0.07
Matches are distributed among these distances:
832 1 0.00
833 77 0.01
834 5 0.00
841 11 0.00
842 163 0.02
843 1 0.00
844 91 0.01
845 1 0.00
847 1 0.00
848 347 0.05
849 8 0.00
850 1 0.00
851 1 0.00
852 10 0.00
853 9 0.00
855 1 0.00
856 10 0.00
857 7 0.00
858 2 0.00
859 2 0.00
861 429 0.06
863 67 0.01
864 4 0.00
865 172 0.03
866 481 0.07
867 104 0.02
868 38 0.01
869 8 0.00
870 2 0.00
871 1 0.00
872 378 0.06
873 120 0.02
874 119 0.02
875 3 0.00
876 60 0.01
877 619 0.09
878 325 0.05
879 8 0.00
880 1 0.00
881 4 0.00
882 6 0.00
883 2 0.00
884 2 0.00
885 3 0.00
886 2 0.00
887 4 0.00
888 5 0.00
889 208 0.03
890 17 0.00
891 2 0.00
892 4 0.00
893 8 0.00
894 7 0.00
895 52 0.01
896 1 0.00
897 3 0.00
898 4 0.00
899 457 0.07
900 568 0.08
901 382 0.06
902 313 0.05
903 28 0.00
904 124 0.02
905 8 0.00
906 94 0.01
907 16 0.00
908 381 0.06
909 40 0.01
910 272 0.04
911 6 0.00
913 2 0.00
914 4 0.00
915 59 0.01
917 1 0.00
920 1 0.00
921 1 0.00
925 2 0.00
926 19 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (861 bp):
GCATATGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAAGGTTGCGGTAGCACGCAGAGGGG
GACACGGTCGATCCCCGACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAG
Found at i:13232671 original size:26 final size:26
Alignment explanation
Indices: 13232633--13232685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13232623 GTTGACTTAG
*
13232633 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13232659 GCATACAGCGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13232685 G
1 G
13232686 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13233569 original size:26 final size:26
Alignment explanation
Indices: 13233533--13233585 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13233523 GTTAACTTAG
*
13233533 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13233559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13233585 G
1 G
13233586 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13234479 original size:26 final size:26
Alignment explanation
Indices: 13234443--13234495 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13234433 GTTGACATAG
13234443 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13234469 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13234495 G
1 G
13234496 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13234971 original size:899 final size:900
Alignment explanation
Indices: 13231752--13235237 Score: 4976
Period size: 899 Copynumber: 3.9 Consensus size: 900
13231742 AGGCATATGA
* * *
13231752 AGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCAGCAGCACATTCTGGGCTCAGGC
1 AGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGC
* *
13231816 ATGTGCTGGTATCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGCATCGCCG
65 ATGTGCTGGTACCACATTTTTCTTCACCAGGGCACCAT--------CA---CCGGAGCATCGCCG
*
13231881 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGGTGTGCGCACATG
119 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-AGGGGGGTGTGCGCACATG
* * *
13231946 ATGTGCGATGGGTGCTGGTACTTGGCCCTTA-ATTGGCCCCGTATCCCTCATCAAACGTTGAGAA
182 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * **
13232010 CTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGTTATTAAAGTGTCT
247 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
13232075 AAAATGGAGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTT
312 GAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
13232140 TTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCA
377 TTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
*
13232205 AAAGAATTTTAAAAAATCTCGAATCC-CAAAAAGTTT-AAAAGATCATGAAAAATAGAAAACGAG
442 AAA-AATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAA-ATCATGAAAAATAGAAAACGAG
* * * *
13232268 TCGTCTTACCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTATAAGCCAAAAA
504 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
13232333 AATGGCATTGGCAAGGAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACG
569 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
13232398 GCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTTGTC
634 GCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCACTCGTTTTGTC
* * * * * *
13232463 GGCTGGCTTCGGCATAC-GAAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTAGTA
699 GGTTGGCTTAGGCATACAG-AGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCA
* * * * *
13232527 GCAGGATCGATAGCACACAGTGGGGGACACGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
763 GCA-GATCGGTAGC-CACAGAGAGGGACACGGTAGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
*
13232592 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
826 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
13232657 AAGCATACAG
891 AAGCATACGG
* * * * * * * *
13232667 CGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAATAGCAAATACTGGGCACGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCA
* ** * *
13232732 TGTGCTGGTAACACATTTTTCTTCGTCAAGGCACCATCACCAGAGCATCGCCGGAGAACCTGACC
66 TGTGCTGGTACCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACC
* * * *
13232797 GGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCACAAATGATATGCGATGGGTG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
13232861 CTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCTTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
13232926 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACT
13232991 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** * *
13233056 ACAAAAATACAAGGATCATGTCTACCAAGTTTGTTGCCAAAACTCCTTCTAAAAACATTTTAAAA
391 ACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA-ATTTTAAAA
* *
13233121 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGGAAACGAGTCGTCTTGCCATGAAA
455 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
13233186 CTTCATGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATCGGCACGT
520 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
13233250 AGAAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
585 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * ** ** **
13233314 TTTCTGGCCGGCGTAGTGACCGCCCGCATGCCCGTCTGCTCGTTTCATCGGTTGGCTTAGGCATA
650 TCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCACTCGTTTTGTCGGTTGGCTTAGGCATA
* * * * * *
13233379 CAGACTTCATTCACAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAAGATCGGCAG-CAT
715 CAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGC-AGATCGGTAGCCAC
* * * *
13233443 GGAGAGTTGTACTCGGTAGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
779 AGAGAG--GGACACGGTAGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
13233508 ACACTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGG
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ***
13233567 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGGTAGCACATGTTGGGCTTGGGCT
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCACA---T--GC-TGGGCT
* * * * * * *
13233632 TGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAAT-ATCGGAGCATCGTCGGAGAA
60 CGGGCATGTGCTGGTACCACATTTTTCTTCACCAGGGCACC-ATCACCGGAGCATCGCCGGAGAA
* *
13233696 CCTGACTGGCGGCATTTGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
124 CCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
* * *
13233761 GATGGTTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
13233826 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13233891 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
318 GAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * **
13233956 GCATGCCAAAAAAAATACAAGGATCATGCCTACCAAGTTTGTTGCCAAAAATCCTTCCGAAAAAA
383 GCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAA
* *
13234021 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
447 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
13234086 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
512 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
13234151 TGGCATGTAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
577 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
13234216 ATCCCGTCTCTCTAGCAGGCGTAGCGCCCGCCCGCCCGCCCGTCCACTCGTTTTGTCGGTTGGCT
642 ATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCACTCGTTTTGTCGGTTGGCT
* * * * * *
13234281 TAGACATACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGCATCG
707 TAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAG-ATCG
* * * * *
13234346 GTAGCCCACAAAGAGGGACACGGTTGATCCCTAGATTGCGCATCCTGCCCCTCTGGCCGGCTGAG
771 GTAG-CCACAGAGAGGGACACGGTAGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
13234411 CGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCG
835 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
13234476 G
900 G
* *
13234477 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCA
* ** * *
13234542 TGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACA
66 TGTGCTGGTACCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACC
** * * * *
13234607 GATGGCA-TGGGGTTCCGGCGAT-AGGGGGCC-GGGGGGTGTGCGCATATGATGTGCGATGAGTG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
13234669 -TCGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACACCCCCTT
196 CT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
13234732 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACAC
13234797 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
13234862 AACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAGGAATTTTAAA
390 AACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA-AAATTTTAAA
* * *
13234927 AAATCCTGAACCGCAAAAAGTTTCAAAAATCATGATAAATAGAAAACGAGTCATCTTGCCATGAA
454 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
13234992 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
13235057 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATTGAGCCACGGCTTGCGCATCCCGT
584 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
13235122 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG----CTCGTTTTGTCGGTTGGCTTAGGCGT
649 CTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCACTCGTTTTGTCGGTTGGCTTAGGCAT
* * * *
13235183 ACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGAT
714 ACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGAT
13235238 ACTGGGCTCG
Statistics
Matches: 2308, Mismatches: 236, Indels: 75
0.88 0.09 0.03
Matches are distributed among these distances:
894 2 0.00
895 68 0.03
898 8 0.00
899 450 0.19
900 329 0.14
901 88 0.04
902 311 0.13
903 28 0.01
904 119 0.05
905 3 0.00
906 84 0.04
907 13 0.01
908 378 0.16
909 38 0.02
910 297 0.13
912 6 0.00
915 85 0.04
916 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCA
TGTGCTGGTACCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCACTCGTTTTGTCGGTTGGCTTAGGCATAC
AGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGATCGGTAGCCACAG
AGAGGGACACGGTAGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:13235929 original size:715 final size:707
Alignment explanation
Indices: 13234469--13235917 Score: 2237
Period size: 715 Copynumber: 2.0 Consensus size: 707
13234459 CCCAGTCTAA
* * * * * ** * * *
13234469 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGATACTGGG
* **
13234534 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCCAAGGCACCATCACCGGAGCATCGCCGGAGA
* *
13234599 ACCTGACAGATGGCATGGGGTTCCGGCGATAGGGGGCCGGGGGGTGTGCGCATATGATGTGCGAT
131 ACCTGACAGACGGCATGGGGTTCCGGCGATAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
13234664 GAGTGTCGGTACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACACCCC
196 GAGTGTCGGTACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
13234729 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGA
261 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGA
13234794 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
13234859 GCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAGGAATTTT
391 GCCAACAAAAATACAAGAATCACGTATACCAAGTTTGGGACCAAAACTCCTTCCAAAGAAATTTT
*
13234924 AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGATAAATAGAAAACGAGTCATCTTGCCAT
456 AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
13234989 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
521 GAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
* *
13235054 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATTGAGCCACGGCTTGCGCATCC
586 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCAATTGAGCCACGGCTTGCGCATCC
* * * *
13235119 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
651 CGTCTCTCTGGCCAGCGTAGT---CGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAG
*
13235179 GCGTACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGATACTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGATACTGGG
* ** *
13235244 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCAAGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCCAAGGCACCATCACCGGAGCATCGCCGGAGA
* * *
13235309 ACTTGATC-GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGA-CAGACGGCA-TGGGGTTCCGGCGAT--AGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
13235373 GCGATGGGTG-CTGGTACTTTGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTC
191 GCGATGAGTGTC-GGTAC-TTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
** * *
13235437 ACACCTTCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13235502 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
319 ATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
13235567 TGTGCATGCCAACAAAAATACAAGGATCATGTATACCAAGTTTGGGACCAAAACTCCTTCTGAAA
384 TGTGCATGCCAACAAAAATACAAGAATCACGTATACCAAGTTTGGGACCAAAACTCCTTC-CAAA
* ** * *
13235632 -AAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCG
448 GAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
13235694 TCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
13235759 GGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACA-CCATTTCGATCCACGGC
577 GGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCAATT-GAGCCACGGC
*
13235823 TTGCGCATCCCGTCTCTTTGGCCAGCGTAGT-GCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTT
641 TTGCGCATCCCGTCTCTCTGGCCAGCGTAGTCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTT
13235887 AG
706 AG
*
13235889 GCATACGGAGTTCATTCCCACTCTAAGAT
1 GCATACGGAGTTCATTCCCAATCTAAGAT
13235918 TAGGCCAGAC
Statistics
Matches: 673, Mismatches: 56, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
710 181 0.27
711 16 0.02
713 13 0.02
714 192 0.29
715 268 0.40
716 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (707 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGATACTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCCAAGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACAGACGGCATGGGGTTCCGGCGATAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GAGTGTCGGTACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGAATCACGTATACCAAGTTTGGGACCAAAACTCCTTCCAAAGAAATTTT
AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCAATTGAGCCACGGCTTGCGCATCC
CGTCTCTCTGGCCAGCGTAGTCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAG
Found at i:13236077 original size:26 final size:26
Alignment explanation
Indices: 13236048--13236100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13236038 ATTGACTTAG
13236048 GCATACGGAGTTCATTCCCT-GTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
*
13236074 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13236100 G
1 G
13236101 ATTGGACGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13237772 original size:26 final size:26
Alignment explanation
Indices: 13237743--13237798 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
13237733 TGGGTTGATT
13237743 TAAGCATAC-GAAGTTCATTCCCAGTC
1 TAAGCATACAG-AGTTCATTCCCAGTC
*
13237769 TAAGCATACAGAGTTCATTGCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
13237795 TAAG
1 TAAG
13237799 ATCGGACCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:13238675 original size:26 final size:26
Alignment explanation
Indices: 13238637--13238689 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13238627 GGTGACTTAG
*
13238637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
13238663 GCATATGGTGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
13238689 G
1 G
13238690 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:13238999 original size:895 final size:884
Alignment explanation
Indices: 13236888--13239646 Score: 3701
Period size: 895 Copynumber: 3.1 Consensus size: 884
13236878 GTTGAGTTAG
* * *
13236888 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAACACATG-TGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
**
13236952 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * * *
13237017 ACCTGGCCGACGGCATTGGGGTTCCGGTGATC-----AG--GGGGGGTGTGCGCACATGATGTGT
131 ACCT-GACGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCA-ATGATGTGC
* * *
13237075 GATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCATA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13237140 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13237205 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTAGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAA-TTTTTTGT
*** * * * *
13237270 GCATGCCAAAAAAAATACAGGGATCACGTCCACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAAA
388 GCATATGAAAAAAAATAAAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAA
* *
13237335 TTTTAAAAAATCTCAAACGTAAAAAGTTTTGAAAATCATGGAAAATAGAAAACGAGTCGTCTTGC
452 TTTTAAAAAATCTCGAACGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
13237400 CATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATAAATTTACAAGCAATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
13237465 GGCACACAGAAATAT-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
582 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-TTGCGCA
** *
13237529 TCCCGTCTC-TTAACTGGCGTAGTGCCTGCCCG-CTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
646 TCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGTCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
13237592 CGGAGTTCATTCCCAGTCTAAGATCAGACCACA-TCAAGGGTTGTGACAGTA-GATTCGGTAACA
711 CGGAGTTCATTCCCAGTCTAAGATTAGACCAGACT-GAGGGTTGTGGCAGCAGGA-TCGGTAGCA
* *
13237655 CACAGAGGGGGACCCGGCCGATCCTCGAG-TTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCC
774 CACAGAGGGGGACCCGGTCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGG-C-GCTGA-CGCCC
* * *
13237719 GCACGATCGTTTCGTGGGTTGATTTAAGCATACGAAGTTCATTCCCAGTCTAA
835 -CACG-TC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13237772 GCATACAGAGTTCATTGCCAGTCTAAGATCGGA-CCG--C-A-GATTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
13237832 CTCGGACATGTGCCGGTGCCGCAATTTTCATCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
13237897 ACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGGTGTGCGCAAATGATGTG
131 ACCTGAC-GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCT-GGGGGGTGTGCGC-AATGATGTG
*
13237962 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
13238027 AACCCCTTAAAGAGCATTCGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTTTGGAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13238092 GGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAAT-TTTTTG
* ** *
13238157 TGCATATGAACAAAAATAAAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCACCCGAAATA
387 TGCATATGAAAAAAAATAAAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAA
**
13238222 ATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCTCGAAC-GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
13238287 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
13238352 TTGGTACGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGATTGCG
580 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GATTGCG
* * * * * *
13238417 TATCCCGTCTCTTTGGCCGACGTACTGCCTACCCGTCT-ACTCGTTTCATCGGTTGGCTTAGGCA
644 CATCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGTCTCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * **
13238481 TACGAAGTTCATTCCTAGTCTAAGATTGGATCAGACTGAGGGTTGTGGTAGCAGGATCGGCGGCA
709 TACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGTAGCA
* * *
13238546 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCACTCTGGCCCGCTGAACGCCCA
774 CACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG--CGCTG-ACGCCC-
*
13238611 CACGCTCATTTCGTGGGGTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CACG-TC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
13238663 GCATATGGTGTTCATTCCAAGTCTAAGATCGGATCGGACCAAGGGTTGTGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
13238728 TTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* *
13238793 ACCTGATCGGCGTCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCGAATGATGTGC
131 ACCTGA-CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGC-AATGATGTGC
* * *
13238858 GATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAGA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
13238923 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
13238988 GGGAAACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT-TG
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTGTG
* * * * * *
13239052 TAAATGCCAAAAAAAATATAAGGATCACATCTACCAAGTTTGGTACTAAAACTCCTTCCGAAAAA
389 CATATG--AAAAAAAATAAAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCCGAAAAA
* *
13239117 ATTATAAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
451 ATTTTAAAAAATCTC-GAA-CGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13239181 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13239246 ATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
579 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GATTGC
* *
13239311 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGTTCGCTCGTTTCGTCGGTTGG
643 GCATCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCG--T---C--TCGCTCGTTTCGTCGGTTGG
* * *
13239376 CTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGAT
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGTGGCAGCAGGAT
* * *
13239441 CGGTAGCACACGGAGGGGGACCCGGTCGATCCCCGGCTTCCGCATCCCACCCCTCT-G-G-T--C
766 CGGTAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGCTGAC
*
13239501 G---CTCGT-TTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCCCCACGTCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13239550 GCATACAGAGTTCATTCCCAGTCTAAGCTCAGACCGGTCTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
13239615 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
13239647 ACTAGGGCCC
Statistics
Matches: 1645, Mismatches: 189, Indels: 79
0.86 0.10 0.04
Matches are distributed among these distances:
879 16 0.01
880 88 0.05
881 1 0.00
883 2 0.00
884 31 0.02
885 1 0.00
887 124 0.08
888 273 0.17
889 119 0.07
890 55 0.03
891 219 0.13
892 9 0.01
893 6 0.00
894 9 0.01
895 452 0.27
896 112 0.07
897 2 0.00
898 1 0.00
899 1 0.00
900 1 0.00
902 2 0.00
903 121 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
ACCTGACGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCAATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTGTGCA
TATGAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCTCGAACGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGATTGCGCATCCCG
TCTCTTTGGCCGGCGTAGTGCCTGCCCGTCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGTAGCACACAGAG
GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGCTGACGCCCCACGTCTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13239560 original size:26 final size:26
Alignment explanation
Indices: 13239524--13239577 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13239514 GTTGACTTAG
*
13239524 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13239550 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13239576 GC
1 GC
13239578 TCAGACCGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13239722 original size:8 final size:8
Alignment explanation
Indices: 13239675--13239766 Score: 68
Period size: 8 Copynumber: 11.4 Consensus size: 8
13239665 ACTAATTTAA
13239675 TATAATAT
1 TATAATAT
13239683 T-TAATTAT
1 TATAA-TAT
13239691 TA-AATAT
1 TATAATAT
*
13239698 TAAAAATAAT
1 T-ATAAT-AT
*
13239708 AATAATAT
1 TATAATAT
13239716 TATAATA-
1 TATAATAT
13239723 -ATAATTAT
1 TATAA-TAT
13239731 T-TAATAT
1 TATAATAT
13239738 TATAATAT
1 TATAATAT
13239746 AATATAATAT
1 --TATAATAT
*
13239756 TATCATAT
1 TATAATAT
13239764 TAT
1 TAT
13239767 TTTATTTCGA
Statistics
Matches: 69, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
6 4 0.06
7 13 0.19
8 35 0.51
9 7 0.10
10 10 0.14
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (8 bp):
TATAATAT
Found at i:13239730 original size:40 final size:41
Alignment explanation
Indices: 13239675--13239763 Score: 119
Period size: 40 Copynumber: 2.2 Consensus size: 41
13239665 ACTAATTTAA
*
13239675 TATAATATTTAATTATTAAATATTA-AAAATAATAATAATAT
1 TATAATATATAATTATTAAATATTATAAAATAAT-ATAATAT
* *
13239716 TATAATA-ATAATTATTTAATATTATAATATAATATAATAT
1 TATAATATATAATTATTAAATATTATAAAATAATATAATAT
*
13239756 TATCATAT
1 TATAATAT
13239764 TATTTTATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 28 0.67
41 14 0.33
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (41 bp):
TATAATATATAATTATTAAATATTATAAAATAATATAATAT
Found at i:13240494 original size:29 final size:29
Alignment explanation
Indices: 13240438--13240496 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
13240428 AGCGTGTGCC
**
13240438 GATGGTGGTCAAGGCAACCGCCTGCACCA
1 GATGGTGGTCAAGGCAACCGCCCACACCA
*
13240467 GATGGTGGTCGAGGCAACCGCCCACACCA
1 GATGGTGGTCAAGGCAACCGCCCACACCA
13240496 G
1 G
13240497 GGCCCAGCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.24, C:0.32, G:0.32, T:0.12
Consensus pattern (29 bp):
GATGGTGGTCAAGGCAACCGCCCACACCA
Found at i:13240540 original size:45 final size:45
Alignment explanation
Indices: 13240467--13240565 Score: 171
Period size: 45 Copynumber: 2.2 Consensus size: 45
13240457 GCCTGCACCA
*
13240467 GATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCGTGTGCC
1 GATGGTGGTCGAGGCAACAGCCCACACCAGGGCCCAGCGTGTGCC
* *
13240512 GATGGTGGTCGAGGCAACAGCGCGCACCAGGGCCCAGCGTGTGCC
1 GATGGTGGTCGAGGCAACAGCCCACACCAGGGCCCAGCGTGTGCC
13240557 GATGGTGGT
1 GATGGTGGT
13240566 AAAACTTTGA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.17, C:0.30, G:0.39, T:0.13
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACAGCCCACACCAGGGCCCAGCGTGTGCC
Found at i:13245088 original size:877 final size:877
Alignment explanation
Indices: 13241649--13246780 Score: 6345
Period size: 903 Copynumber: 5.8 Consensus size: 877
13241639 CCCAGTCAAA
* * * * * *
13241649 GCATACGGAGTTTATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * * *
13241714 CTCGGGCATGTGCTAGTGCCGA-ATTTATCTTCGTCGGGGCACTATCACCGGAGCATCTCCGGAG
66 CTCGAGCATGTGCTGGTGCC-ACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * ** *
13241778 AGCCTGACCGACGGCATTGGGGTTTCGGTGATCG-GGGCTGCC--GGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGG-GGCCAGGGGGGTGTGCGCACATGATG
*
13241840 TGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
13241905 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
13241970 ATGAGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTATCTGAATTTATT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
13242035 TGTGCATGCCAAAAATAACACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCC-AAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
13242099 AAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
454 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * **
13242164 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTACATGAAATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13242229 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
584 CATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
13242294 CGCATCCCGTCTCTCTGGTCGACGTAATGCCTGCCCGCCTGCCCGCCCGCTCGTTTCATCAGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTG
* * * * *
13242359 GCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGAATCGGACTGAGGGTTACGGTACCAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGA
** * * * *
13242424 TCAACAGCACACAGAGGGTGACCCAACCGATCCTTGGCATGCGCATCCCGCCCCACTGGCCGGCT
778 TCCGCAGCACACAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
13242489 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
843 GAACACCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13242524 GGATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCGAAGATCGGACTGGAC
1 GCATACGGAGTTCATTCCCAGT-T-----T---AAG---------A-TCG--GA-C---C-GGAC
* * * * * * * *
13242589 CGAGGGTTACGACAGAACATACTGGGCTTGGGCTTGTGTTGGTGCCACATTTTTCTTTG-CTGAG
40 CGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGG
** * * *
13242653 GCACCATCGTTGGAGCATCGCCGGAGAACCTGACCGACGACATTGGAGTACCGACGGCATTGGGG
104 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC-G-A------
* *
13242718 TTTTGGCGATCGGGGGGCTGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGA
161 ---T--CGA---GGGGGC-CAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
13242783 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCACTTAAAGAGCATTTGA
217 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
13242848 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
282 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
13242913 TCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAA
347 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
13242978 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCAT-AAACC
412 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-TCGAACC
* * * * *
13243042 GCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC-TCGACGCGA
476 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGA
* * *
13243106 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAA
540 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATATGA
* * * *
13243171 AGATGTGCCTAAACCCACCCACCAGCCTATCGATCCACGGCTTACACATCCCGTCTCGT-TGGCC
605 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGCC
* * * * *
13243235 GGCGTAGTGGCCGCCCGCCCTCCCGCCGTTCGTTTCGTCGGTTGGGTTAGGCATACGGAGTTCAT
669 GGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
13243300 TCCCAGTCTAAGATCAGACCAGA-TGGAGGGTTGCGGTAGCAGGAT-CGACAACATACAGAGGGG
734 TCCCAGTCTAAGATCGGATCGGACT-GAGGGTTGCGGTAGCAGGATCCG-CAGCACACAGAGGGG
* * * * * ** * ** **
13243363 GACCCGACCGATCCCCGACTTGCGCATCCCGCACGCTCGTTTCGTGGGTTG-ACTTAGGCATACG
797 GACCCAACCGATCCTCGGCTTGCGCATCCCGC-C-C-C-TCTGGCCGGCTGAAC--ACCCGCACG
** * ***** * *
13243427 -GAG-TTCATTCCCAGTC-TAA
856 CTCGTTTCGTGGGTTGACTTAG
* ** * * * * *
13243446 GCATATGGAGTTCATTCCCAGTCAAAGATCGGATCAGACCGAGGGTTACG-TAGCAGATGCTGGA
1 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * ** * *
13243510 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACTATCATCGAAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * **
13243575 ACCTGACCGACGGTATTGGGGTTCCGACGATCGAGGGGGTC-GGGGGGTGTATGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
13243639 CGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCGTCAAACCT-GAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13243703 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAATT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13243768 GGGGACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTATCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
13243833 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACT-CTTTC-AAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
13243896 AGGTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAATTCATGAAATATAG-AAACGAGTCGTCT
456 A-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13243960 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13244025 ATTGGCATGCAA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTG
585 ATTGGCACG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** *
13244089 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAACCCGCCTGCTCGTTTCATCGATTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCATCGGTTG
* ** * * *
13244154 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGCTTGCGGCAGCCGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGA
* * * * * *
13244219 TCCGTACCACACAGAGGGGGACCCAATCGATCCTCGGCTTGCGCATCCCACCGCTCTAGCCGGCT
778 TCCGCAGCACACAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * * *
13244284 GAACACCCATACGCTTGTTTCGTGGGTTTAGTTAG
843 GAACACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13244319 GCATATGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * ** * *
13244384 CTCGAACATGTGCTGGTGCCATATTTTTCAGCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ***
13244449 ACCTGACCGACGGCATTGGTGTTCCGGCGATCGAGGGGGCCAGGGGGGTGTAATCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
13244514 CGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGCACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
13244579 ACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGTCAATAGCCATT-AAGTGTCCGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13244643 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
13244708 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
13244773 ACTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
456 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
13244838 GCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAGAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
13244903 TTGGCACGAAGAAATGTGAAGATGTGGCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
586 TTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
13244968 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTTGTTTCATGGGTTGGC
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCATCGGTTGGC
* *
13245033 TTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCGGATTGGACTGAGGGTTGCGGCT-GCAGGAT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGG-TAGCAGGAT
* * ** * ** * *
13245097 CGGTAGCACGTAGAGGGGAACCTGACCGATCCTCGGCTTACGCATCCTGCCCCTCTGGCCGGCTG
779 CCGCAGCACACAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
13245162 AACGCTCGCACGCTCGTTTCATGGGTTGACTTAG
844 AACACCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13245196 GCATACGGAGTTCATTCTCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATGGGAA
1 GCATACGGAGTTCATTCCCAGTTTAAG-AT-C-G-G---A---CC-G-----GA-C---------
* *
13245261 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
40 CGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * * * * *
13245326 TACCATTGTCGGAGCATCGCGGGAGAACCTGATCGATGGCATTGGGGTTCCGACGATCGGGGGGG
105 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGG
*
13245391 CCAGGGGGGTGTGCGCACATGACGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
170 CCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
13245455 TCCCCCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTACTG
235 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
13245520 CCAGTAGCCATTAAAGTTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
13245585 TTCGAGTTTTTAGCTGAATTCTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCCACCAAGT
365 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * **
13245650 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAATATCTCGATCCGTAAAAAGTTTTGAAAATC
430 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* * *
13245715 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
495 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
13245780 TGAGTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
560 TGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
13245845 ACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCG
625 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
13245910 CCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTCAGATTGGATC
690 CCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * * * ** * *
13245975 GGACCT-AGGTTTGTGGTGGCAGGATCGGCAGCACGTAGAAGGGGA-CCAACCGATCCCCGGCTT
754 GGA-CTGAGGGTTGCGGTAGCAGGATCCGCAGCACACAGAGGGGGACCCAACCGATCCTCGGCTT
***
13246038 GCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
818 GCGCATCCCGCCCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
13246098 GCATACGGAGTTCATTCCCAGTCTCAA-ATCGGATCGGACCGAGGGTTGC-AGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGT-TTAAGATCGGACCGGACCGAGGGTTACGA-CAGCACATGCTG
* * * * *
13246161 GGCTC-AGGCATATGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATTGCCGGAGCATCACTGG
64 GGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * * * *
13246225 AGAACCTGAACGGCGGCATTGGGGTTTCGACAATCGGGGGGGCCGAGGGGGGGTGTGCGCACATG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-A-GGGGGGTGTGCGCACATG
* * * *
13246290 ATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAAAA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
13246355 CTCATACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
** * *
13246420 GAAATGGACACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
13246485 TTTTGTGCATACCAACAAAAAA-ACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCTTTCT
386 TTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
13246548 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
450 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
13246613 CGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
13246678 ATGGCATTGGCAC-ACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGGTCCACG
580 ATGGCATTGGCACGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
13246742 GCTTGCGCATCCCGTCTCTCTGGCCGGC-TGAGTGCCCGC
644 GCTTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGC
13246781 TCACTCGTTT
Statistics
Matches: 3675, Mismatches: 461, Indels: 239
0.84 0.11 0.05
Matches are distributed among these distances:
870 7 0.00
871 8 0.00
872 7 0.00
873 49 0.01
874 275 0.07
875 370 0.10
876 406 0.11
877 427 0.12
878 256 0.07
879 209 0.06
880 6 0.00
881 2 0.00
882 3 0.00
884 5 0.00
885 1 0.00
886 2 0.00
887 2 0.00
888 1 0.00
891 1 0.00
892 1 0.00
893 4 0.00
894 4 0.00
895 85 0.02
896 17 0.00
897 2 0.00
898 1 0.00
899 1 0.00
900 4 0.00
901 99 0.03
902 194 0.05
903 582 0.16
904 4 0.00
912 1 0.00
913 3 0.00
914 2 0.00
917 2 0.00
918 3 0.00
919 1 0.00
920 371 0.10
921 213 0.06
922 25 0.01
923 8 0.00
924 6 0.00
925 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATCC
GCAGCACACAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAA
CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13245226 original size:26 final size:26
Alignment explanation
Indices: 13245196--13245248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13245186 GTTGACTTAG
* *
13245196 GCATACGGAGTTCATTCTCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13245222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13245248 G
1 G
13245249 ATCAAATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13246842 original size:26 final size:26
Alignment explanation
Indices: 13246806--13246858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13246796 GTTGACTTAG
*
13246806 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13246832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13246858 G
1 G
13246859 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13248111 original size:828 final size:836
Alignment explanation
Indices: 13246832--13249787 Score: 3019
Period size: 828 Copynumber: 3.4 Consensus size: 836
13246822 CCCAGTCTAA
* * * ** * *
13246832 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACTGAGGGTTGCGACAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGA-ACCCGACCGAGCATTGCGGCAGCACATGCTAG
* * ** * * ** *
13246896 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCATTGAAG
65 GATCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCA-CACCGGAG
* * * * * *
13246961 AACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGAGGAGTGCGCACATGATGTA
129 -ACATGA-CGGC-GCATTGGGGTTCCGACGACCGGGGGGCCGGGG-GGTGTGCGCACATGATGTG
*
13247026 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
13247091 ACCCCTTTAAAGAGCATTTGGGATATTACATGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAAT
* *
13247156 AGGGACATTTTTTTCAAATGG-CAACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTT
320 GGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTT
* **
13247220 GTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCGATCCAAAAA
384 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTCCAAAAA
** ** * *
13247285 AATTTTAAAAAATCTTGAACCGTAAAAATTTTTGAAAATCGTGAAAAAAAAGAAAAGGAGTCGTC
449 AATTTTAAAAAATCCCGAACCGTAAAAA-TTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTC
*
13247350 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTGCAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGG
* * * * *
13247415 CATTGGCACGTAGAAATATTAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTG
577 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * *
13247480 CGTATCCTATCTCTCTGGCCGGCGTAGTGCCCGCCCACCCATCCGCTCGTTTCATCTATTGGCTT
642 CGCATCCTGTCTCTATGGCCGGCGTAGTGCCCGCCC-CCC-TCCGCTCGTTTCGTC-ATTGGCTT
* * * *
13247545 AGGCATACGGAGTTCATTCATAGACTAAGATCGAACCAGATCGAGGGTTGCGGCAGCAGGATCGG
704 AGGCATACGGAGTTCATTC-CAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* **
13247610 CAGCACGCAGAGAGGGACCCGATTGATCCCCGACTTGCGCATCCCTCCCCTCT-G-G-TC-GGTT
768 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCTCCCCTCTCGCGCTCTGGTT
13247671 G-A-
833 GTAG
* * * * *
13247673 GCATACGGAGTTCTTTCCTAGTCTAAGATCGAACCCGACCGAGCATTGCGGCAGCAGATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCCGACCGAGCATTGCGGCAGCACATGCTAGG
* * *
13247738 ATCGAGCATGTGCT-GTG-TCGTATTTTTCTTCATCGGGGCACCATCGCCGGAG-A-ACCTG-G-
66 ATCGAGCATGTGCTGGTGCT-GCATTTTTCTTCATCGAGGCACCATCGCCGGAGCACACCGGAGA
**
13247797 CATG-C-GC-TTTTGGGGTTCCGACGACCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
130 CATGACGGCGCATTGGGGTTCCGACGACCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
13247859 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTTGAGAACACACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
13247924 CTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTTTTTAAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGA
* *
13247989 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCAT
* * * *
13248054 GCCAACAAAAATACAAGGATCACATCTACCAAGTATGGGGTGAAAACACCTTCCAAAAAAATTTT
390 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTCCAAAAAAATTTT
*** *
13248119 AAAAAATCCCGAACAACAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATG
455 AAAAAATCCCGAACCGTAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
13248184 AAACTTCACGTGAAGGCTTAAGGGACCACTGTTTGAATTTAG-AAGCCATAAAAATGGCATTGGC
520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-GCAAGCCATAAAAATGGCATTGGC
* *
13248248 ACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGACTTGTGCAT-C
584 ACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
*
13248312 TCGTCTCTATGGCCGACGTAGTGCCCG-----C-CCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
649 T-GTCTCTATGGCCGGCGTAGTGCCCGCCCCCCTCCGCTCGTTTCGTCA-TTGGCTTAGGCATAC
* * *
13248371 GGAGTTTATTTCCAGTCTAAGAT-TAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACG
712 GGAGTTCA-TTCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * *
13248435 CAAAGGGGGACTCGACCGATCCCTGACTTGCGCATCCCGCCCCTATGGCCGGCTGAGCGCCCGCA
775 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCTCCCC--T------CT-------CG--
13248500 CGCTCATTTTGTGGGTTGACTTAG
823 CGCTC------T-GGTTG---TAG
* *** **
13248524 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCCGACCGAGCATTGCGGCAGCACATGCTAGG
* * * * * *
13248589 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGAGGCACCATCGCTGGAGCATCACCGGAGA
66 ATCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCA-CACCGGAG-
* * * *
13248654 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGTGCGCACTTGATG
129 ACATGA-CGGC-GCATTGGGGTTCCGACGA-CCGGGGGG-C-CGGGGG-GTGTGCGCACATGATG
* * * *
13248719 TGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCTCTATCCCTCATGAAACCTCCAGAACTC
188 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13248784 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAA
253 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAA
* *
13248849 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTGGTACACTTCAAGTTTTTAGCTGATTTGTTT
318 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTT-TTT
* *
13248914 TTG-GCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
382 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTCCAAA
*
13248978 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACCAGTCGT
447 AAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
13249043 CTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
511 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATG
** * **
13249108 GCATTGGCTTGCACAAATATGAAGATGTGAATAAACCCACCTACCACCCTATCGATCCACGACTT
576 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* ** * *
13249173 GCGCATCCTGTCTCTTTGGCCGGTATAGTGCCCGCCCGGCCGCT-CGCTCATTTCGTCGGTTGGC
641 GCGCATCCTGTCTCTATGGCCGGCGTAGTGCCCGCCC--CC-CTCCGCTCGTTTCGTC-ATTGGC
* *
13249237 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGGCAGCAGGAT
702 TTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGAACCAG-ACCGAGGGTTGCGGCAGCAGGAT
* * * ** *
13249301 CGCCAGCACACAGAGGGGGACCCGACCAATCCCCGACTTATGCATCCTGCCCCTCTAGCTGGCTA
765 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCC--CTCC-C---CT--CT-
13249366 AACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
821 ------CG--CG--C---TC-T-GGTTG---TAG
* * * *
13249400 GCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGGAT
1 GCATACGAAGTTCATTCCCAGTCTAAG-AT-CG-A----A---CC---C---GA-CCG--AGCAT
* * * * ** * ** *
13249465 CGAGGGTTCTAACAGCATAAGCTGGGCCCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG-GG
47 TG-CGG--C-AGCA-CAT--GCTAGGATCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGAGG
* ** * * *
13249529 CACCATCGTCGGAGCATCGTCGGAGAACCTAACTGGCGGCATTGGGGTTCCGACGATCGGGGGGC
105 CACCATCGCCGGAGCA-CACCGGAG-ACATGAC-GGC-GCATTGGGGTTCCGACGACCGGGGGGC
*
13249594 CGGGGGCCGTGTGCGCACATGAAT-TGCAATGGGTG-T--TACTTTGGCCCTGTATATTGGCCCC
166 CGGGGG--GTGTGCGCACATG-ATGTGCGATGGGTGCTGGTAC-TTGGCCCT-TATATTGGCCCC
* * * *
13249655 CTATCCCTTATTAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
226 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
13249720 CTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGT
291 CTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGT
13249785 ACA
355 ACA
13249788 AGGATCATGT
Statistics
Matches: 1781, Mismatches: 216, Indels: 178
0.82 0.10 0.08
Matches are distributed among these distances:
817 2 0.00
818 115 0.06
819 3 0.00
820 2 0.00
825 2 0.00
826 164 0.09
827 13 0.01
828 273 0.15
829 28 0.02
831 1 0.00
832 1 0.00
834 4 0.00
836 1 0.00
837 2 0.00
838 2 0.00
839 1 0.00
840 31 0.02
841 67 0.04
842 1 0.00
846 5 0.00
850 1 0.00
851 65 0.04
852 31 0.02
853 2 0.00
855 4 0.00
856 1 0.00
858 3 0.00
860 1 0.00
861 2 0.00
863 15 0.01
864 7 0.00
865 1 0.00
866 5 0.00
867 272 0.15
868 183 0.10
869 2 0.00
875 3 0.00
876 164 0.09
877 2 0.00
878 6 0.00
879 1 0.00
880 1 0.00
881 2 0.00
882 1 0.00
883 1 0.00
892 2 0.00
893 2 0.00
895 5 0.00
896 4 0.00
897 8 0.00
898 113 0.06
899 54 0.03
900 12 0.01
901 51 0.03
902 36 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (836 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCCGACCGAGCATTGCGGCAGCACATGCTAGG
ATCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCACACCGGAGAC
ATGACGGCGCATTGGGGTTCCGACGACCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTCCAAAAAAATTTTA
AAAAATCCCGAACCGTAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCAC
GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTG
TCTCTATGGCCGGCGTAGTGCCCGCCCCCCTCCGCTCGTTTCGTCATTGGCTTAGGCATACGGAG
TTCATTCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG
GGGACCCGACCGATCCCCGACTTGCGCATCCCTCCCCTCTCGCGCTCTGGTTGTAG
Found at i:13249437 original size:26 final size:26
Alignment explanation
Indices: 13249400--13249452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13249390 GTTGACTTAG
* *
13249400 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13249426 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13249452 G
1 G
13249453 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13251201 original size:717 final size:717
Alignment explanation
Indices: 13249784--13251481 Score: 2552
Period size: 717 Copynumber: 2.4 Consensus size: 717
13249774 CAAAATCTTG
* *
13249784 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAAATTTTAAAAAATCCCG
*
13249849 AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
65 AACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
13249914 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
130 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * *
13249979 TGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGTATCCCATCTCTCTGG
195 TGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** * * * * *
13250044 CTGGTGTAGTGCCTGCCCTCCCACCCGTCCGGTCGTTTCATCGGTTGGCTTAGGCATACGGAACT
260 CCGGCATAGTACCTGCCCGCCCACCCGTCCGCTCGTTTCATCCGTCGGCTTAGGCATACGGAACT
* * * * * *
13250109 CATTCCCAGTCTTAGATTGGACCGGACTGAGGGTTACGACAGCACATGCTGGGTTTGGGCATGTG
325 CATTCCCAATCTAAGATTGGACCAGACTGAGGGTTACGACAGCACATACTGGGCTCGGGCATGTG
** * * * *
13250174 CTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATTGCCAGAGAACTTGACCGGCG
390 CTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGAAGCATCGCCAGAGAACTAGACCGGCA
* * *
13250239 GCATTGGGGTTCCAGTGATCGGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGG
455 CCATTGGGGTTCCAGTGATCGGGGGGCCGAGGGGGTGTGTGCACATGATATGCGATGGGTGCTGG
*
13250304 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCCCGAGAACTCACACCCCGTTAAAGA
520 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCCCGAGAACTCACACCCCCTTAAAGA
* *
13250369 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
585 GCATTTGACATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTT
* * *
13250434 TCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
650 TCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
13250499 AAA
715 AAA
*
13250502 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATGCCGA
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * *
13250567 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCAT
66 ACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * **
13250632 GAAGGCTTAAGGGACCATTGTACGAATTTGCAAGCCATAAAAATGGCATTGGCACATAGAAATAT
131 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * *
13250697 GAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGC
196 GAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * **
13250762 CGGCATAGTA-CTCGCCCGCCCGCCCG-CTCGCTCGTTTCGTCCGTCGGCTTAGGCATACGGAGT
261 CGGCATAGTACCT-GCCCGCCCACCCGTC-CGCTCGTTTCATCCGTCGGCTTAGGCATACGGAAC
* * *
13250825 TCATTCGCAATCTAAGATTGGACCAGACTGAGGGTTGCGATAGCACATACTGGGCTCGGGCATGT
324 TCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTACGACAGCACATACTGGGCTCGGGCATGT
* *
13250890 GCTGGTGCCACATTTTTCTTCGTC-GGGCACCATCG-CTGAAGCATCGTC-GAAGAACCTAG-CC
389 GCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTC-GAAGCATCGCCAG-AGAA-CTAGACC
*
13250951 GGTACCATTGGGGTTCCA-TCGATCGGGGGGGCC-AGGGGGTGTGTGCACATGATATGCGATGGG
451 GGCACCATTGGGGTTCCAGT-GATC-GGGGGGCCGAGGGGGTGTGTGCACATGATATGCGATGGG
*
13251014 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGAGCTCACACCCCC
514 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCC-CGAGAACTCACACCCCC
*
13251078 TTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGAC
578 TTAAAGAGCATTTGACATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTCAAATGGGGAC
13251143 ACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCAT
643 ACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* *
13251208 GCTAACAAAAA
707 GCCAAAAAAAA
*
13251219 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTAT-CGAAAAAATTTTCAAAAATCCC
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCT-TCCGAAAAAATTTTAAAAAATCCC
* * * * * * *
13251283 AAACTGAAAAAAGTTTGGAAAATTGTGAAAAATAGAACATGAGTCGTCTTGCCATGAAACTTCAC
64 GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
13251348 GTGAAGGCTTAAGGGCCCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACGCAGAAAT
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* *
13251413 ATGAAGATGTGCATAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTA
194 ATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
13251478 GCCG
259 GCCG
13251482 ACGTTGTGCC
Statistics
Matches: 886, Mismatches: 83, Indels: 22
0.89 0.08 0.02
Matches are distributed among these distances:
715 5 0.01
716 244 0.28
717 403 0.45
718 233 0.26
719 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGA
ACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCATAGTACCTGCCCGCCCACCCGTCCGCTCGTTTCATCCGTCGGCTTAGGCATACGGAACTC
ATTCCCAATCTAAGATTGGACCAGACTGAGGGTTACGACAGCACATACTGGGCTCGGGCATGTGC
TGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGAAGCATCGCCAGAGAACTAGACCGGCAC
CATTGGGGTTCCAGTGATCGGGGGGCCGAGGGGGTGTGTGCACATGATATGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCCCGAGAACTCACACCCCCTTAAAGAG
CATTTGACATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTT
CAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
AA
Found at i:13251721 original size:26 final size:26
Alignment explanation
Indices: 13251692--13251741 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13251682 TTGACTTAGG
13251692 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
13251718 CATATGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
13251742 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:13253084 original size:876 final size:883
Alignment explanation
Indices: 13252031--13254194 Score: 2948
Period size: 898 Copynumber: 2.4 Consensus size: 883
13252021 CCATTTTTAG
* * *
13252031 CTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCATTCCAACAAAAATACAATGATCATGT
1 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* *
13252095 CTACCAAGTTTGGGGCCAAAACTCCTTAT-GAAAAAATTTTAAAAAATCTCGAACCACAAAAAGT
66 CTACCAAGTTTGGGGCC-AAACTCC-TATCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
* * *
13252159 TTCAAAAATTGTGAAGAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGA
129 TTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * *
13252224 GACCATTGCATTAATTTACAAGCCATAAAAAAGGCATTGGCACACAGAAATATGAAAATGTGCCT
194 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* ***
13252289 AAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCGATTGGCATAGTGCCC
259 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCGGCCGGCATAGTGCCC
* *
13252354 GCCCGCTCGTTCGCTCACTCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAA
324 GCCCGC-CG-TCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * ** *
13252419 GATCAGACCAAATTGATGGTTGCGACAGTAGGATCGGCAGCACGTAGAGGGGGACCCGATTGATC
387 GATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATC
* * * * * ** ** *
13252484 CTCGGCTT-TCGCATCCTGCCCCTTTGG-TCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTGGA
452 CCCGACTTAT-GCATCCCGCCCCTCTGGCT-GACTGAGAACCCACACGCTCATTTCGTGGGTGGA
*
13252547 CTTAGGCATACTGAGTTCATTCCCAGTCTAAG-AT-CAGA-C-C-G-T-A-C-C-GAGGGTTACG
515 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGACCACAGATAAGCACTGAGGGTTACG
* * * *
13252602 GCAGCACATGCTGGGCCCGGGGATGAGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGTCA
580 GCAGCACATGCTAGGCCCGGGCATGAGCTGGTGCCACATTTTTCCTCATCGGGGCACCATCGTCA
* ** ** *
13252667 GAGCATCACCAGAGAACCTGACTGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTG
645 GAGCATCACCAGAGAACCTGACCGGAAGCATTACGGTTCCGACGATC-GGGGGGCCGGGGGGGTG
*
13252732 TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
709 TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAA
*
13252797 ACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTAGC-AGTAGCCA
774 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCTAGTAGCCA
* *
13252861 TTAAAGTGTCTGAAATGGGGACACTTTGTTCAAATGGTCACAAAAT
838 ATAAAGTGTCTAAAATGGGGACACTTTGTTCAAATGGTCACAAAAT
*
13252907 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
1 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
13252972 CTACCAAGTTTGGGGCCAAACTCCTATCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT
66 CTACCAAGTTTGGGGCCAAACTCCTATCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT
*
13253037 CAAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
131 CAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** * *
13253102 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTACCTAA
196 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* ** * * *
13253167 ACCCACCTACCAGCCTATCGATCCACGGCTTGCGCATCTTGTCTCTTTGGCCGGCGTAGTGACCG
261 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCGGCCGGCATAGTGCCCG
* * *
13253232 CCCGCC--CGCTCGCTCGTTTCATCGGTTGGCTTAGGCATGCGGAGTTCATTCGCAGTCTAAGAT
325 CCCGCCGTCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
13253295 CTGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGTGGACCCGATCGATCCCC
390 CAGACCAAACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCC
* *
13253360 GACTTATGCATCCCGCCCCTCTGGCTGACTGAGAACCCACACGTTCATTTCGTGGGTTGACTTAG
455 GACTTATGCATCCCGCCCCTCTGGCTGACTGAGAACCCACACGCTCATTTCGTGGGTGGACTTAG
13253425 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCCTTCCCAGTCTAAGATCGAAGCAGAC
520 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGA--------CCA--C--AGAT--AAGC--AC
* * * *
13253490 TGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCCTCGTCGGGG
569 TGAGGGTTACGGCAGCACATGCTAGGCCCGGGCATGAGCTGGTGCCACATTTTTCCTCATCGGGG
* ** * *
13253555 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGAAGCATTACGGTTCCGACGATCGGGGGGT
634 CACCATCGTCAGAGCATCACCAGAGAACCTGACCGGAAGCATTACGGTTCCGACGATCGGGGGGC
* ** *
13253620 TGGGGGGGTGTGCGTGCATGATGTGTGATGGGTGCTTGTACTTGGCCCATATATTGGCCCCCTAT
699 CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTAT
13253685 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
764 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
13253750 TAGTAGCCAATAAAGTGTCTAAAATGGGGACACTTTTTTCGAATGGTCACAAAAT
829 TAGTAGCCAATAAAGTGTCTAAAATGGGGACACTTTGTTCAAATGGTCACAAAAT
* * ** *
13253805 CTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTGTAAATGCCAACAATAATACAAGGATCATGT
1 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
** ** *
13253870 CTA-CAAGTTTGGGGCCAAACTCCT-TCCGAAAAATTTTAAAAAATCTCGAATAGTAAAAAGTTT
66 CTACCAAGTTTGGGGCCAAACTCCTATCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT
* * *
13253933 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATT-ATGTGAAGGTTTAAGGG
131 CAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGG
* * * *
13253997 ACCATTGTATGAATTTAGAAGCCATTAAAATGGCATTGGCACATAGAAATATGAAGATATGCCTA
195 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* * *
13254062 AACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTTTCTGGCCGGCATAGTGCCC
260 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GGCCGGCATAGTGCCC
* *
13254127 G-CCGCCTGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
324 GCCCGCC-GT-CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
13254191 GATC
387 GATC
13254195 GAATCGGACC
Statistics
Matches: 1127, Mismatches: 123, Indels: 53
0.86 0.09 0.04
Matches are distributed among these distances:
873 181 0.16
874 4 0.00
875 7 0.01
876 227 0.20
877 70 0.06
884 1 0.00
887 1 0.00
890 1 0.00
891 1 0.00
894 1 0.00
895 7 0.01
896 203 0.18
897 25 0.02
898 241 0.21
899 157 0.14
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (883 bp):
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
CTACCAAGTTTGGGGCCAAACTCCTATCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT
CAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCGGCCGGCATAGTGCCCGC
CCGCCGTCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAAACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCG
ACTTATGCATCCCGCCCCTCTGGCTGACTGAGAACCCACACGCTCATTTCGTGGGTGGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACAGACCACAGATAAGCACTGAGGGTTACGGCAGCA
CATGCTAGGCCCGGGCATGAGCTGGTGCCACATTTTTCCTCATCGGGGCACCATCGTCAGAGCAT
CACCAGAGAACCTGACCGGAAGCATTACGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCAC
ATGATGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAATAAAGTG
TCTAAAATGGGGACACTTTGTTCAAATGGTCACAAAAT
Found at i:13253461 original size:26 final size:26
Alignment explanation
Indices: 13253425--13253477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13253415 GTTGACTTAG
*
13253425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13253451 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13253477 G
1 G
13253478 ATCGAAGCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13254836 original size:4 final size:4
Alignment explanation
Indices: 13254829--13254853 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13254819 CTGGCGTAGT
13254829 GCCC GCCC GCCC GCCC GCCC GCCC G
1 GCCC GCCC GCCC GCCC GCCC GCCC G
13254854 TTCGTTTCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.72, G:0.28, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:13254845 original size:703 final size:714
Alignment explanation
Indices: 13253451--13254922 Score: 2072
Period size: 703 Copynumber: 2.1 Consensus size: 714
13253441 CCCAGTCTAA
* * *
13253451 GCATACAGAGTTCCTTCCCAGTCTAAGATCGAAGCAGACTGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCACATGCTAGG
* *
13253516 CTCGGGCATGTGCTGGTGCCACATTTTTCCTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCCTCGTCGCGGCACCATCGTCGGAGCAACGT--GAGA
*** * ** *
13253581 ACCTGACCGGAAGCATTACGGTTCCGACGATCGGGGGGTTGGGGGGGTGTGCGTGCATGATGTGT
129 ACCTGACCGG-AGCATTACGGTTCCGACGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTGC
* *
13253646 GATGGGTGCTTGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGAACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13253711 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAATAAAGTGTCTAAAATG
258 CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAATG
* * *
13253776 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATGTTTTTGT
* * * **
13253841 AAATGCCAACAATAATACAAGGATCATGTCTACAAGTTTGGGGCCAAACTCCTTCCGAAAAATTT
388 AAATGCCAACAAAAATACAAGGATCAGGTCTACAAGTTTGGGGCCAAAATCCTTCAAAAAAATTT
* * * * * * *
13253906 TAAAAAATCTCGAATAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
453 AAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCCTGCCA
* * * * *
13253971 TGAAACATTATGTGAAGGTTTAAGGGACCATTGTATGAATTTAGAAGCCATTAAAATGGCATTGG
518 TGAAACATTACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * **
13254036 CACATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
583 CACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCACATC
* *
13254101 CCATCTTTCTGGCCGGCATAGT-GCCCGCCGCCTGTCCGCCCG-C-TCGTTTCGTCGGTTGGCTT
648 CCATCTCTCTGGCCGGCATAGTCGCCCGCCGCCTGCCCGCCCGCCGTCGTTTCGTCGGTTGGCTT
13254163 AG
713 AG
* * * *
13254165 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCACATGCTAGG
* ** * *
13254230 CTCTGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGCGGCACCATCGTCGGAG-AAC-T-TG-AC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCCTCGTCGCGGCACCATCGTCGGAGCAACGTGAGAAC
**
13254291 C-GA-C-G-GCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTGCGAT
131 CTGACCGGAGCATTACGGTTCCGACGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTGCGAT
* *
13254352 GGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCC
196 GGGTGCTGGAACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
13254417 CATTAAAGATCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
261 CATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAATGGGG
* **
13254482 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGGA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATGTTTTTGTAAA
13254547 TGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAAATCCTTACAAAAAAATTT
391 TGCCAACAAAAATACAAGGATCAGGTCTA-CAAGTTTGGGGCC-AAAATCCTT-CAAAAAAATTT
* * *
13254612 AAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCATGAAAAAAAGAAAATGAGTCGTCCTGCCA
453 AAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCCTGCCA
13254677 TGAAAC-TTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 TGAAACATT-ACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
13254741 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCTCCCAATCGATCCATGGCTTGCACAT
582 GCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCACAT
* * * * *
13254806 TCCGTCTCTCTGGCTGGCGTAGT-GCCCGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTG
647 CCCATCTCTCTGGCCGGCATAGTCGCCCG-CCGCCTGCCCGCCCG-CCG-TCGTTTCGTCGGTTG
13254870 GCTTAG
709 GCTTAG
*
13254876 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACTGAGGGTT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACTGAGGGTT
13254923 TGGGTAGTAG
Statistics
Matches: 672, Mismatches: 76, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
703 253 0.38
704 13 0.02
705 11 0.02
706 201 0.30
707 15 0.02
708 3 0.00
709 2 0.00
710 1 0.00
711 63 0.09
712 1 0.00
713 2 0.00
714 107 0.16
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCACATTTTTCCTCGTCGCGGCACCATCGTCGGAGCAACGTGAGAAC
CTGACCGGAGCATTACGGTTCCGACGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGAACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATGTTTTTGTAAA
TGCCAACAAAAATACAAGGATCAGGTCTACAAGTTTGGGGCCAAAATCCTTCAAAAAAATTTAAA
AAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCCTGCCATGA
AACATTACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCACATCCCA
TCTCTCTGGCCGGCATAGTCGCCCGCCGCCTGCCCGCCCGCCGTCGTTTCGTCGGTTGGCTTAG
Found at i:13255064 original size:26 final size:26
Alignment explanation
Indices: 13255035--13255087 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13255025 GTGGACTCAG
*
13255035 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13255061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13255087 G
1 G
13255088 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13256896 original size:701 final size:698
Alignment explanation
Indices: 13255061--13257240 Score: 2861
Period size: 708 Copynumber: 3.1 Consensus size: 698
13255051 GCCAGTCTAA
** *
13255061 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGGGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGGGGCAGCACATGCTGGG
**
13255126 CTCGAGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGGCACCATCACTGGTGAATCGTCAGAG
66 CTCGAGCATGTGCTGGTGTC-GCATTTTTCTTCACCGGGGCACCAT--C----G--TCG--AGAG
* * * *
13255190 AACCTGACCG-GTAGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGGTGTACGCACATAAT
120 AACCTGACCGCG-A-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGAT
* * *
13255254 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
183 GTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCACCTATCCCTCATCAAACCTCGAGAACT
13255319 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
248 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
13255384 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTT
313 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTT
* * * * * *
13255449 TTGTGCATGGCAACAAAAATATAGGGATCACGTCTTCCAAGTTTGGGGCCAAAACACCTTCCAAA
377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
13255514 AAAATTTTAAAAAATCCTGAACCGCAAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
442 AAAATTTTAAAAAATCCTGAACCGC-AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
** * * *
13255579 TCTTGCCATGAAACTTCTGGTGAAGGCTTAAGGGAACTTTGTATTAATTTACAAGCCAAAAAAAT
506 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAAT
13255644 GGCATTGGCACATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
571 GGCATTGGCACA-A-AAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
13255709 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCACGCTCGCCCGCCCACTCATTTCGTCGGT
634 TGCGCATCCCGTCTCTCTGGCCGACGTA--G--TG--C-C-CGCCCGCCCGCTCATTTCGTCGGT
*
13255774 TGGCTTAC
691 TGGCTTAG
* * * * * *
13255782 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGGGGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGGGGCAGCACATGCTGGG
* * * *
13255847 CTTGGGCATGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACAATCGTCGAAGAATCATCAGAGA
66 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTC---G-------AGAGA
* * * * * *
13255912 ACCTGATCGGCGGCAATAGGGTTTCGATGATC-GGGGGGCCGGGGG-GGTGTGCGCACATGATGT
121 ACCTGA-CCGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATGT
* *
13255975 GTGATGGGTGCTAGTACTTGG-CC-C---TT----A--TATCCCTCATCAAACCTCGAGAACTCA
185 GCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
*
13256029 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
250 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13256094 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATTGAGTTTTTAGCTGAATTTTTTT
315 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTTTT
* * * * * *
13256159 ATGCATCCCAAAAAAAATAGAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
13256224 AATTTTAAAAAATTCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
444 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
13256289 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
509 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGC
* * * *
13256354 ATCGGCATGCAAAAATATGAGGATGT-CCTTAAACCCACCTACCACCCTATCGATCCATGGCTTG
574 ATTGGCA--CAAAAATATGAAGATATGCC-TAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
13256418 CGCAACCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGTTCATTTCGTTGGTTGGCTTAG
636 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * *
13256481 GCATACGGAGTTCATTCCCAGTCTAAAATTGGACTAGACTGAGGGTTATGGG-AGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTT-GGGGCAGCACATGCTGG
* * * * *
13256545 GCTCGAGCACGTACTAGTGTCGCATTTTTTTTCACCAGGGCACCATCGTCG-GAGAACCTGACCA
65 GCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGAGAGAACCTGACC-
*
13256609 GCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCGCATGATGTGCGATGGGT
129 GCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATGTGCGATGGGT
* * *
13256674 GCTGGTACTTGGCCCTCATATTGGCCACCTATCTCTCATCAAACCTCAAGAACTTACACCCCCTT
194 GCTGGTACTTGGCCCTCATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
13256739 AAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
13256804 TTTTTTCAAATGG-CTACAAAATCTTGTACACTTCGAGTTTTTAGCGGAATTTTTTTGTGCATGC
324 TTTTTTCAAATGGTC-ACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
13256868 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAA
387 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * * **
13256933 AAAATCCCAAACTGCAAAAAG-TTTCAAAATTTTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
452 AAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
13256997 AACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
13257062 ACAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCACATCCCG
582 A-A-AAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
13257127 TCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAG
645 TCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * *
13257185 GCATACGGAGTTCATTCCCAGACTAAGATTGGACCAGACTGTGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGGGGCAGCA
13257241 GGATCGGCAG
Statistics
Matches: 1280, Mismatches: 140, Indels: 95
0.84 0.09 0.06
Matches are distributed among these distances:
687 1 0.00
688 28 0.02
689 13 0.01
690 36 0.03
691 2 0.00
692 1 0.00
695 2 0.00
696 1 0.00
698 2 0.00
699 122 0.10
700 177 0.14
701 227 0.18
703 4 0.00
704 78 0.06
705 1 0.00
706 2 0.00
707 172 0.13
708 229 0.18
709 2 0.00
713 2 0.00
714 2 0.00
715 1 0.00
716 1 0.00
718 2 0.00
719 35 0.03
720 11 0.01
721 123 0.10
722 2 0.00
723 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (698 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGGGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGAGAGAACCTGACCGC
GACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTCATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCACAAAA
ATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:13257373 original size:26 final size:26
Alignment explanation
Indices: 13257344--13257396 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13257334 GTTGACTTAG
* *
13257344 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13257370 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13257396 G
1 G
13257397 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13258273 original size:26 final size:26
Alignment explanation
Indices: 13258235--13258287 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13258225 GTTGACTTAG
13258235 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13258261 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13258287 G
1 G
13258288 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13258293 original size:886 final size:890
Alignment explanation
Indices: 13256533--13258343 Score: 2615
Period size: 886 Copynumber: 2.0 Consensus size: 890
13256523 GGGTTATGGG
* * * * * *
13256533 AGCACATGCTGGGCTCGAGCACGTACTAGTGTCGCATTTTTTTTCACCAGGGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGA
*
13256598 GAACCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCGCATGAT
66 GAACCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGAT
* * *
13256663 GTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCACCTATCTCTCATCAAACCTCAAGAACT
131 GCGCGATGGCTGCTGGTACTTGGCCCTCATATTGGCCACCTATCCCTCATCAAACCTCAAGAACT
*
13256728 TACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTAA
196 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTAA
*
13256793 AATGGGGACACTTTTTTCAAATGGCTACAAAATCTTGTACACTTCGAGTTTTTAGCGGAATTTTT
261 AATGGGGACACCTTTTTCAAATGGCTACAAAATCTTGTACACTTCGAGTTTTTAGCGGAATTTTT
*
13256858 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATCCGAA
326 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACATCCGAA
* ** *
13256923 AAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAATTTTGAAAAATAGAAAACGAGTCGTC
391 AAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAATCATGAAAAATAAAAAACGAGTCGTC
* *
13256988 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGG
456 TAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13257053 CATTGGCACACAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTG
521 CATTGGCACACAGAAAGAGGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTG
* *
13257118 CACATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTT
586 CACATCCCGTCTCTCTAGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * *
13257183 AGGCATACGGAGTTCATTCCCAGACTAAGATTGGACCAGACTGTGGGTTGCGGCAGCAGGATCGG
651 AGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGA
* * * *
13257248 CAGCACGCAGAGGGGGACCCGACTGATCATCGATTTACGCATCCCGCCCCTCTGGCCGACTGATC
716 CAGCACGCAGAGGGGGACCCGACTGATCACCGACTTACGCATCCCGCCCCTCTGGCCGACGGACC
* * ** * *
13257313 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAG
781 ACCCACACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAG
13257378 AGTTCATTCCCAATCTAAGATCGGATC-G-GA-CCGAGGGTTACGAC
846 AGTTCATTCCCAATCTAAGA-C-GATCGGAGACCCGAGGGTTACGAC
** *
13257422 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGA
* *
13257487 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTG-GCGCACATGAT
66 GAACCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGAT
* * * *
13257549 GCGCGATGGCTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
131 GCGCGATGGCTGCTGGTACTTGGCCCTCATATTGGCCACCTATCCCTCATCAAACCTCAAGAACT
* * **
13257614 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGT
196 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTAA
* * * *
13257679 AATGGGGACACCTTTTTCAAAT-GTTCACAAAATCTTGTACACTTTGA-TTGTTTAGCTGACTTT
261 AATGGGGACACCTTTTTCAAATGGCT-ACAAAATCTTGTACACTTCGAGTT-TTTAGCGGAATTT
** * *
13257742 TTTTGTGCATGCCAACAAAAATACAAGGATCATTTCTACCAAGTTTGGGGCCAAAACTACTTCTG
324 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACATCCG
*
13257807 AAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
389 AAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTC-AAAATCATGAAAAATAAAAAACGAGTC
*
13257872 GTCTAGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
453 GTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
13257937 TGGCATTGGCATGCAGAAAGAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
518 TGGCATTGGCACACAGAAAGAGGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCAACAGC
* * * *
13258002 TTGCGCATGCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACTCGCCCGCTCGTTTCGTCGG
583 TTGCACATCCCGTCTCTCTAGCCGACGTAGTGCCCACCCG--C-C-CGCCCGCTCGTTTCGTCGG
*
13258067 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAAAC-GAGGGTTGCGGCAGC
644 TTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACC-AAACTGAGGGTTGCGGCAGC
* * ** * * *
13258131 AGGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGTGCATCCTGCCTCTCTGGT
708 AGGATCGACAGCACGCAGAGGGGGACCCGACT-GATCACCGACTTACGCATCCCGCCCCTCTGGC
* *
13258195 CGACGGACCACCCACACACTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
772 CGACGGACCACCCACACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
** * * ** *
13258260 AGCATATGGGGTTCATTCCCAGTCT-A-A-GATCGGATCGACCCGAGGGTTGTGGC
837 AGCATACAGAGTTCATTCCCAATCTAAGACGATCGGA--GACCCGAGGGTTACGAC
*
13258313 AGCACATGCTGGG-TCGGACATGTGCTGGTGC
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGC
13258344 AGTCATCGGG
Statistics
Matches: 820, Mismatches: 88, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
885 4 0.00
886 279 0.34
887 184 0.22
888 4 0.00
889 99 0.12
890 22 0.03
891 225 0.27
892 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGA
GAACCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGAT
GCGCGATGGCTGCTGGTACTTGGCCCTCATATTGGCCACCTATCCCTCATCAAACCTCAAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTAA
AATGGGGACACCTTTTTCAAATGGCTACAAAATCTTGTACACTTCGAGTTTTTAGCGGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACATCCGAA
AAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAATCATGAAAAATAAAAAACGAGTCGTC
TAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACACAGAAAGAGGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTG
CACATCCCGTCTCTCTAGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGA
CAGCACGCAGAGGGGGACCCGACTGATCACCGACTTACGCATCCCGCCCCTCTGGCCGACGGACC
ACCCACACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAG
AGTTCATTCCCAATCTAAGACGATCGGAGACCCGAGGGTTACGAC
Found at i:13258399 original size:25 final size:26
Alignment explanation
Indices: 13258364--13258415 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13258354 GTTGACTTAG
* *
13258364 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13258390 GCATA-GGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13258415 G
1 G
13258416 ATCGGACGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13258466 original size:129 final size:129
Alignment explanation
Indices: 13258225--13258472 Score: 340
Period size: 129 Copynumber: 1.9 Consensus size: 129
13258215 CATTTCGTGT
* *
13258225 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGGGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGAT
* * * * * *
13258290 CGGATCGACCCGAGGGTTGTGGCAGCACATGCTGGGTCGGACATGTGCTGGTGCAGTCATCGGG
66 CGGATCGAACCGAGGGTTCTGGCAGCACATACAGGGTAGGACATGTGCTAGTGCAGTCATCGGG
*
13258354 GTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATA-GGAGTTCATTCCCAATCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGAT
* * *
13258418 CGGA-CGAGACCGAGGGTTCCT-GCATCACATACAGGGCTAGGGCTTGTGCTAGTGC
66 CGGATCGA-ACCGAGGGTT-CTGGCAGCACATACAGGG-TAGGACATGTGCTAGTGC
13258473 CGCATTTTTC
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
127 3 0.03
128 46 0.44
129 55 0.53
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (129 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGAT
CGGATCGAACCGAGGGTTCTGGCAGCACATACAGGGTAGGACATGTGCTAGTGCAGTCATCGGG
Found at i:13260638 original size:714 final size:716
Alignment explanation
Indices: 13259249--13260732 Score: 2347
Period size: 714 Copynumber: 2.1 Consensus size: 716
13259239 CCCAATTTAA
* * * *
13259249 GCATATGGAGTTCATTCCCATTCTAAGATCAGACCGGATTGAGGGTTGAGGCAGCACATGTCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCACATCTCGGG
* * * * *
13259314 CTCAAGCATGTGCTGGTGCTATATTTTTCTTTACCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCAAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCATCGAAGA
* *
13259379 ACTTGACCAGCGGCATTGGGGTTCTGACGATGGGCGGCCAGGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCAGCGGCATCGGGGTTCTGACGATGGGCGGCCA-GGGGGGTGTGCACACATGATGTGC
13259444 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
13259509 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13259574 GGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTAT
* *
13259639 GCATGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAGAACTCCTTCCTTAAAAA
390 GCATGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAAATCCTTCCTTAAAAA
* *
13259704 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAGAAATAGAAAACGAGTCGTCTCG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAGAAATAGAAAACGAGTCGTCTCG
*
13259769 TCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGTGATAAAAATGGCTT
520 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGTGATAAAAATGGCTT
* **
13259834 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCAACGCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCCACAACGCTATCGATCCACGGCTTGCGC
* * * *
13259899 ATCCCGTCTCTTTGAACGGCATAGTGCCCGCCCG-CC-C-GCCCGCTTGTTTCGTCGGTTGGCTT
650 ATCCCGCCTCTTTGAACGACATAGTGCCCGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGCCTT
13259961 AG
715 AG
* * * * *
13259963 GCATACGGAGTTCATTCCCAGTGTAAGATTC-GAGCGAACTGAGGGTTGTGGTAGCACATACT-G
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACTGAGGGTTGAGGCAGCACAT-CTCG
** * * * *
13260026 GGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGGAGCATCATCGAA
64 GGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCATCGAA
* * * * *
13260091 GAACCTGA-CTGACGGCATCGGGGTTTTGGCGATCGGG-GTAGCC-GGGGGTTGTGCGCACATGA
129 GAACCTGACCAG-CGGCATCGGGGTTCTGACGAT-GGGCG--GCCAGGGGGGTGTGCACACATGA
13260153 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
*
13260218 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGGCAGTAGCCATTAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
13260283 AAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTCTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTCTTAGCTGAATTTT
*
13260348 TTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCTT
385 TTTATGCATGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAAATCCTTCCTT
13260413 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAGAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAGAAATAGAAAACGAGTCG
*
13260478 TCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAAT
515 TCTCGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGTGATAAAAAT
*
13260543 GGCTTTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCCACCACGCTATCGATCCACGGCT
580 GGCTTTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCCACAACGCTATCGATCCACGGCT
* **
13260608 TGCGCATCTCGCCT-TTCTGGCCGACATAGTGCCCGCCCGCCTACCCGCTTGCCCGCTCGTTTCG
645 TGCGCATCCCGCCTCTT-TGAACGACATAGTGCCCGCCCG----CCCGC-TGCCCGCTCGTTTCG
13260672 TCGGTTGCCTTAG
704 TCGGTTGCCTTAG
13260685 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
13260733 CAGTAGTAGG
Statistics
Matches: 702, Mismatches: 52, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
713 4 0.01
714 617 0.88
715 6 0.01
716 3 0.00
719 2 0.00
720 1 0.00
721 2 0.00
722 67 0.10
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCACATCTCGGG
CTCAAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCATCGAAGA
ACCTGACCAGCGGCATCGGGGTTCTGACGATGGGCGGCCAGGGGGGTGTGCACACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTATG
CATGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAAATCCTTCCTTAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAGAAATAGAAAACGAGTCGTCTCGC
CATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGTGATAAAAATGGCTTT
GGCATGCAGAAATATGAAGATGTCCCTAAACCCACCCACAACGCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTTTGAACGACATAGTGCCCGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGCCTTA
G
Found at i:13262235 original size:712 final size:715
Alignment explanation
Indices: 13260870--13262354 Score: 2198
Period size: 712 Copynumber: 2.1 Consensus size: 715
13260860 CCCAGTCTAA
* * * *
13260870 GCATACGGAGTTCATTCCCAATCAAAGATCAGACCGGACCGAGGGTTGAGGCAGCACGTGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCCGGG
* * *
13260935 CTCGAGCAAGTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCACAGGAGCAACGCGGAGAA
66 CTCGAGCAAGTGCTAGTGCCGCATTTTTCTTCGTCGAGGCACCATCACAGGAGCAACGCAGAGAA
* *
13261000 CCTGACCGGCGGCATTGGGGTTCTGACGATAGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * *
13261065 ATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGATACTTGGCCCCTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13261130 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTGAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
13261195 GGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTTGCTGAATTTTTTGTGC
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGC
* * *
13261260 ATGCCAACAAAAATACAAGGATCCCGTCTACCGAATTTGGGACCAAAACTCCTTCCTAAAAAATT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCGAATTTGGGACCAAAACACCTTCCGAAAAAATT
* *
13261325 TTAACAAATCCCGAACCGCAAAAAGTTTCAAAAATTATAAAAAATAGAAAACGAGTCATCTTGGC
456 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCATCTTGGC
*
13261390 ATGAAACTTCACGTGAAGGCTTAAACGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAACGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * ** * *
13261455 GCACGTAGAAATATGAAGATGTGCCTACGCCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
586 GCACACAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCACAT
* * * *
13261520 CCCGTC-TCTCTGGTCGACGT-AG-T-GCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTA
651 CCCG-CATCTCTGGCCGACATAAGCTCGCCCGCCCGCCCGCCCGCACGTTTCGTCAGTTGGCTTA
13261581 G
715 G
** * *
13261582 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCCGGG
* * * *
13261647 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCAC-CAGAG
66 CTCGAGCAAGTGCTAGTGCCGCATTTTTCTTCGTCGAGGCACCATCACAGGAGCA--ACGCAGAG
* * *
13261711 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGTGCGCATATGGTGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGG-CCGGGGGGGTGTGCGCACATGATGT
* * *
13261776 G-G-TGGGTGGTGATACTTGGCCCCTATATTGACCCTCTATCCGTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGATACTTGGCCCCTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCA
* ** * *
13261839 CACCTCCTGAAAGAGCATTTGAGATTTTAAATTTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTGAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13261904 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTCTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TT
* *
13261969 ATGCATGCCAACAAAAATACAAGGATGACGTCTACC-AAGTTTGCGG-CCAAAACACCTTTCGAA
387 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCGAA-TTTG-GGACCAAAACACCTTCCGAA
* * *
13262032 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCAT
* ** *
13262097 CTTGTCATGAAACTTCACGTGAAGGCTTAAGGGAACGTT-TATGAATTTACAAGCCATAAAAATG
515 CTTGGCATGAAACTTCACGTGAAGGCTTAAACGAACATTGTATGAATTTACAAGCCATAAAAATG
13262161 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTT
* * *
13262226 GCACATCCCGCATCTCTGGCCGGCATAGAGCTCGCCTGCCCGCCCGCCCGCACGTTTTGTCAGTT
645 GCACATCCCGCATCTCTGGCCGACATA-AGCTCGCCCGCCCGCCCGCCCGCACGTTTCGTCAGTT
13262291 GGCTTAG
709 GGCTTAG
* * *
13262298 GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCAC
13262355 GCAAAGGGGA
Statistics
Matches: 690, Mismatches: 72, Indels: 18
0.88 0.09 0.02
Matches are distributed among these distances:
711 1 0.00
712 383 0.56
713 189 0.27
714 29 0.04
715 1 0.00
716 87 0.13
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (715 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCCGGG
CTCGAGCAAGTGCTAGTGCCGCATTTTTCTTCGTCGAGGCACCATCACAGGAGCAACGCAGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGATACTTGGCCCCTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTGAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGC
ATGCCAACAAAAATACAAGGATCACGTCTACCGAATTTGGGACCAAAACACCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCATCTTGGC
ATGAAACTTCACGTGAAGGCTTAAACGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCACAT
CCCGCATCTCTGGCCGACATAAGCTCGCCCGCCCGCCCGCCCGCACGTTTCGTCAGTTGGCTTAG
Found at i:13262483 original size:26 final size:26
Alignment explanation
Indices: 13262447--13262497 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13262437 TGACTTAGGA
13262447 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
13262473 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13262498 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:13264255 original size:26 final size:26
Alignment explanation
Indices: 13264225--13264277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13264215 GTTGACTTAG
*
13264225 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13264251 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13264277 G
1 G
13264278 ATAAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13265145 original size:26 final size:26
Alignment explanation
Indices: 13265116--13265168 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13265106 GTTGACTTAG
13265116 GCATAC-GAGGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
13265142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13265168 G
1 G
13265169 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13265559 original size:892 final size:895
Alignment explanation
Indices: 13261582--13267689 Score: 6776
Period size: 890 Copynumber: 6.9 Consensus size: 895
13261572 GTTGGCTTAG
** * * *
13261582 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-AGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAAGGAT--GGTAGCACATGCTGG
* ** * * *
13261646 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCACCAGAG
63 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT----TGAGCAT---CGGAG
* * * * * *
13261711 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGTGCGCATATGGTGT
121 AACCTTACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
* * * * * * *
13261776 --GGTGGGTGGTGATACTTGGCCCCTATATTGACCCTCTATCCGTCATCAAACCTCGAGAACTCA
186 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * ** * *
13261839 C-ACCTCCTGAAAGAGCATTTGAGATTTTAAATTTTTGTTGCCAGTAGCCATTAAAGTGTTTGAA
251 CAACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13261903 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTCT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
13261968 TATGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGCGGCCAAAACACCTTTCGAAA
380 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
13262033 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
445 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
13262098 TTGTCATGAAACTTCACGTGAAGGCTTAAGGGAACGTT-TATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13262162 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTG
575 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * * * *
13262227 CACATCCCG-CATCTCTGGCCGGCATAGAGCTCGCCTGCCCGCCCGCCCGCACGTTTTGTCAGTT
640 CGCATCCCGTC-TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTCGGTT
* *
13262291 GGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCA-GACCAAGGGTTGTGGCAGC--
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGTGGCAGCAG
* * *
13262353 -A---C-GCA---A-AGGGGAACCTGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGGC
769 GATCGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
13262409 TGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGAATACAGAGTTCATTCCCAGTCTAA
834 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
13262471 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCG-AGGATTGAAGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGA-TG--GTAGCACATGCTGG
* * *
13262535 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
63 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--T--GAGCA---TCGGAG
* * ** * *
13262600 AA-CTTGATCGATGGCATTGGTATTCC-AGCGATCGGAGGGGCC-AGGGGGTGTGCGTACATGAT
121 AACCTT-ACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGAGGGGGTGTGCGCACATGAT
* * *
13262662 GTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
184 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
13262727 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCTGA
249 CACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
13262792 AATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCAAGTTTTTAGTTGAATTTTT
314 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
13262857 TTATACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAA-TGCCTTTCGA
379 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGA
* *
13262921 AAAAATTTTAAAAAATCCCAAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
443 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
13262986 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-TATGAATATACAAGCCATAAAAAT
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
13263050 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGACT
573 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** *
13263115 TGCACATCCCGGCTCTCTGGCCGACATAAAGCCCGCCCGCCC-CCC-ATCTGCTCATTTCGTCGG
638 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTC-GCTCATTTCGTCGG
* * * *
13263178 TT-GCTTACGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CAGGACTGA-GGTT-T----GC
702 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGTGGCAGC
* * * *
13263235 A--A---CAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTACGCATCCCGCCCCTCTGG-CG
767 AGGATCGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** * * *
13263294 GTCTGATCG--TG-TGGTTCGTTTCATGGGTTGACTTA-GCATACGGAGTT-ATTCTCTCAGTCT
832 G-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-C-CAGTCT
13263354 AA
894 AA
** **
13263356 GCATACGGAAG-T-ATTCCCAGT-TAAGATACAGACC-AATTGATTTGA-GGTAGCA-ATG-TGG
1 GCATACGG-AGTTCATTCCCAGTCTAAGAT-CAGACCGAACCGA-AGGATGGTAGCACATGCTGG
*
13263414 GCTCGCGGCATGTGCTTGGTGCCGCA-TTTTCTTCACCGGAGGCACCATTGCCGGAGCATCGTCG
63 GCTCG-AGCATGTGC-TGGTGCCGCATTTTTCTTCACCGG-GGCACCATT----GAGCATCG--G
* * ** * * ** *
13263478 GGATACCTGATTGATGGCATT-GGATTCATACGATC-GGGTGG-C-A--GGGTGTGCGCACATGA
119 AGA-ACCTTACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGA
* * * * *
13263537 TGTTTACGATTGGTACT-GTGACTTTGCCCTTATATTTTTGGTCCCTTATCCCTCATCAAA-CTC
183 TG--TACGATGGGTGCTGGT-ACTTGGCCCTTATA---TTGGCCCCCTATCCCTCATCAAACCTC
**
13263600 -AGAACTCAC-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTTGCTGCCAGTAGTTATT-A
242 GAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGG--TTTGCTGCCAGTAGCCATTAA
* *
13263662 AGTGT-TCAAAT-GGGACAAAC-TTTTTCAAATGGTCACAAAGATCTGTCTACAC-TCGAAGTTT
305 AGTGTCTGAAATGGGGAC--ACTTTTTTCAAATGGTCACAAA-ATCT-TGTACACTTCG-AGTTT
* * *
13263723 TTGAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCC
365 TT-AGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** * *
13263788 AAAACT-CTTTCTGAAAAAATTTTAAAAAATCCTTAACCGTAAAAAGTTTCGAAAATCGTGAAAA
429 AAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
*
13263852 ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
493 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** * *
13263917 ACAAGCCATAAAATTCACATTGGCACATAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCC
558 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
13263982 TATCGATCCACGGCTTGCGCATCCCGCCTCACTAGCAGACGTAGTGCCCGCCCGCCCGCCCGCTC
623 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTC
* *
13264047 G----TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA-CTAGACC-GGACC
688 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGGACC
* * *
13264106 GAGGGTTGTGGCAGCAGGATCGCCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGCGCAT
752 GAGGGTTGTGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * * *
13264171 CCCACCCCTCTAGCCGTCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
816 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
13264236 TCATTCCCAGTCTAA
881 TCATTCCCAGTCTAA
* * * * *
13264251 GCATACGAAGTTCATTCCTAGTCTAAGATAAGACC-AGACCGAGGGTCATGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAAGG--ATGGTAGCACATGCTGG
* * *
13264315 GCTTGGGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATT--GC--CGGAGAA-CTTG
63 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGAGCATCGGAGAACCTT-
** * * *
13264375 ACCGACGAAATTGGGGTTCCGACGATCGAGGGGGCTGA-GGGGTGTGCGCACATGATGTTCGATG
127 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTACGATG
* *
13264439 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCC
* ** * *
13264504 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGTTATTAAAGTGTCTCAAATGGGGG
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
13264569 CACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * * *
13264634 GCCAACAAAAATACAAAGATCACATCTACCAAGTTTGGGGCAAAAACTCCTTTCGAAATAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* * * *
13264699 AAAAAATCCCAAACCG-CAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCCTGCCAT
452 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* **
13264763 GAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGCTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
13264828 ACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGAT-CACCGGCTTGCGCATC
582 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATC
* * *
13264892 CTGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
646 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAG
* * * *
13264957 GCATACGGAGTTTATTCCCAGTCTAAGATCATACCAGG-CCGAGGGTCGTGGCAGCAGGATCGGT
711 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGTGGCAGCAGGATC-GC
* * * * * * * *
13265021 AGCACGCAGAGGGGGACTCGACTGATCCCCAGCTTACACATCCCGCCCTTTTGGCCGACTGAGCG
775 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* **
13265086 CCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATAC-GAGGTTCATTCCCAGTCTAA
840 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAA
* ** * *
13265142 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAAGGATGCGATAAAACATGATGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGATG-G-TAGCACATGCTGGG
* * * * * *
13265207 ATCGAGCATGTG-TCGGCGCTGCATTTTTCCTCACCAGGGCACCATT-A-C-T-GAAGAACCTTA
64 CTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGGGCACCATTGAGCATCGGAGAACCTTA
* * * * * *
13265267 CCGACGGCATTGTGCTTCCAATGATCGGGGGGGCCGAGGGGGTATGCACACATGATGTACGATGG
128 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTACGATGG
* *
13265332 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACAACCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCC
* * * *
13265397 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATATCTGAAATAGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
13265462 ACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATC
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
* *
13265527 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTTCGAAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * **
13265592 GAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
13265657 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACATGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * *
13265722 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC
583 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * **
13265787 GTCTCTCTGGCCGACTTAGTGCCCACCCGTCCG-TC-CTC-C-CA---C-TCATTTGGCTTAGGC
648 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGC
* * * *** *
13265844 AGACGGAGTTCATTCCCAGTCTAAGATCAAACCA-GACTGAGGGTTACAGTAGCAGGATCGGCAG
713 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGTGGCAGCAGGATC-GCAG
* * * * * * *
13265908 CACACAGAGGGGGACCCGACCAATCCCTGGCTTGCGCATCCCGCCCCTCTAGCTGGCTGAGTGTC
777 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
13265973 CGCACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT-TGAA
842 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AA
13266027 G-AT-C-GA----A----C---C---G----GACCG-A--G--GGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGG--ATGGTAGCACATGCTGGG
* * * * * *
13266066 CTTGAGCATATGCTGGTGTCACATTTTTCTTCATCAGGGCACCATCATCGGAGCATCACCGGAGA
64 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--T--GAGCAT---CGGAGA
* *
13266131 ACCTGACCGGTGGCATTTGGCTACCGAAGACATTGGGGTTCCGATGATC-GGGGGGCCGAGGGGG
122 ACCTTA-C-----C-----G--A-CG--G-CATTGGGGTTCCGACGATCGGGGGGGCCGA-GGGG
** * *
13266195 GTGTGCGCACATGATGTGTGATGAGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
169 GTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
13266260 CAAACCTTGACAACTCAC-ACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
234 CAAACCTCGAGAACTCACAAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * ** *
13266324 CCATTAAAGTGTCTAAAATGAGGCCACTTTTTTTGAATGGTGACAAAATCTTGTACACTTCGAGT
298 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
13266389 TTTTAGCTG-ATTTTTTTTTGTACATG-CAAC-AAAATACAAGGATCAGGTCTACCAAGTTTGGG
363 TTTTAGCTGAATTTTTTTATG--CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
13266451 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAATTTCAAAAATCGTGAA
426 GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
13266516 AAATAGAAAACGAGTCG-CTTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTATATGAA
491 AAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * ** *
13266580 TTTACAACCCGTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCA
555 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
13266645 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCG
620 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * *
13266710 CTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCGGATC-GGA
685 CTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGA
* * * * * ** ** * *
13266774 TCGAGGGTTGCGGCAGTAGGATCGACAGTATGCAGA--TTGACCC-AGTTGATCCCCAGCTTGTG
750 CCGAGGGTTGTGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCG
* * * * *
13266836 CATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGATCATTTCGTAGGTTGACTTAGGCATACGG
813 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
13266901 AGTTCATTCCCAGTCTAA
878 AGTTCATTCCCAGTCTAA
* * * *
13266919 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGG--ATGGTAGCACATGCTGGG
** **
13266984 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCATCATCACCGGAGCATCGTCGGAGA
64 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA-C--CA-TTGAGCA---TCGGAGA
* * ** * * *
13267049 ACC-TAGCCGACGACATTGGGGTTTCGGTGATC-GAGGGGCCG-GGGGGTTTGCGCACATGATTT
122 ACCTTA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
* ** *
13267111 ACGATGGGCGCTGGTGTTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCA
186 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13267176 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAA
251 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13267241 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTCAATTTTTTT
316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
13267306 GTGCATTCCAACAAAAATACATGGATCACGTCTTTCAAGTTTGGGGCCAAAACTCC-TTCGAAAA
381 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAA
* ** *
13267370 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
445 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
13267435 TTGCCATAAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *** * *
13267500 CATTTGCTTGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCATGGCTTG
575 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** *
13267565 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCATCCGCCCGCTCATTTCGTCGGTTG
640 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTCGGTTG
* ** *
13267630 GCTTAGGCATACGGAGTTCATTCCCAGTCTAACATTGGACC-GGACCGAGGGTTGCGGCAG
705 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGTGGCAG
13267690 TACATGCTGG
Statistics
Matches: 4458, Mismatches: 545, Indels: 421
0.82 0.10 0.08
Matches are distributed among these distances:
859 46 0.01
860 2 0.00
861 5 0.00
863 1 0.00
864 6 0.00
865 1 0.00
866 1 0.00
868 1 0.00
870 9 0.00
871 2 0.00
874 1 0.00
876 18 0.00
877 7 0.00
878 81 0.02
879 45 0.01
880 113 0.03
881 232 0.05
882 123 0.03
883 22 0.00
884 37 0.01
885 200 0.04
886 294 0.07
887 414 0.09
888 231 0.05
889 205 0.05
890 480 0.11
891 374 0.08
892 432 0.10
893 215 0.05
894 74 0.02
895 39 0.01
896 28 0.01
897 13 0.00
898 4 0.00
899 211 0.05
900 371 0.08
901 33 0.01
903 1 0.00
904 2 0.00
905 1 0.00
906 1 0.00
907 1 0.00
909 1 0.00
912 1 0.00
913 4 0.00
914 1 0.00
916 1 0.00
917 2 0.00
918 67 0.02
919 1 0.00
921 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGATGGTAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGAGCATCGGAGAACCTTACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTACGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGTGGCAGCAGGATCGCAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13266929 original size:26 final size:26
Alignment explanation
Indices: 13266893--13266945 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13266883 GTTGACTTAG
13266893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13266919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13266945 G
1 G
13266946 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13268554 original size:26 final size:26
Alignment explanation
Indices: 13268524--13268573 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13268514 GGCTTAGGCA
13268524 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
13268550 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13268574 ATCGAACGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:13270901 original size:26 final size:26
Alignment explanation
Indices: 13270871--13270923 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13270861 GTTGACTTAG
*
13270871 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGACTAA
13270897 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
13270923 G
1 G
13270924 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:13273617 original size:33 final size:33
Alignment explanation
Indices: 13273575--13273639 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
13273565 TGTGCGATGG
*
13273575 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAT
1 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCAT
13273608 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
1 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
13273640 CCATCGCCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.08, C:0.25, G:0.32, T:0.35
Consensus pattern (33 bp):
GTGCTGGTGCCACATTTTTCTTCGTCGGGGCAT
Found at i:13274448 original size:26 final size:26
Alignment explanation
Indices: 13274411--13274463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13274401 GTTGACTTAG
* *
13274411 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13274437 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13274463 G
1 G
13274464 ATCGCACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13275347 original size:26 final size:26
Alignment explanation
Indices: 13275311--13275362 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13275301 GTTGACTTAG
13275311 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13275337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13275363 CATCGAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13276217 original size:26 final size:26
Alignment explanation
Indices: 13276187--13276239 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13276177 GTTGACTTAG
*
13276187 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13276213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13276239 G
1 G
13276240 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13277105 original size:26 final size:26
Alignment explanation
Indices: 13277075--13277127 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13277065 GTTGACTTAG
13277075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13277101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13277127 G
1 G
13277128 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13277783 original size:888 final size:889
Alignment explanation
Indices: 13273602--13277838 Score: 5869
Period size: 873 Copynumber: 4.8 Consensus size: 889
13273592 TTCTTCGTCG
* * * * * *
13273602 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCATCAGAGAACC
1 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACC
* * * * * * *
13273667 TAACCGGCGACATTGGGGTTTCGGCGATCGGGTGAGCCGGGTGGGGTGTCCGCACATGATGTGCT
66 TGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGGCGGG-GGGGTGTACGCACATGATGTGCG
*
13273732 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
129 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
13273797 CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTACTGGCAGTAGCCATTAAAGTGTCTGAAATGG
194 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
* * * *
13273862 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTTGCTAAATTTTTTTTTG
259 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* * *
13273927 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAAT
324 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAAT
* * * *
13273992 TTTAAAAAATCCAGAACCGTAAAAAGTTT-AGAAAGTCGTGAAAAATAGAAAACGTGTCGTCTTG
388 TTTAAAAAATCCCGAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
13274056 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAAT
452 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
13274121 TGGCATGCAGAAATATGAAGATGTGCCTATACCCACCTACCACCCTATCGATCCACGACTTGCGC
517 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGC
* * * * * *
13274186 AACCCGTCTCTCTGGCTGGCGTAGTGCCCCCTGACCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
582 ATCCCGTCTCTCTGGCCGACGTAGTG--CCC-GCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
* * * * *** *
13274251 AGACATACGAAGTTCATTCCTAGTCTAGGATCAGATTGGACTGAGGGTTGTAGCAGCAGGATTGG
644 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG-TGTAGCAGCAGCA----
* * *
13274316 CAGCACGTAGAGGGGACCCGATCGATCACCGGCTTACG-A-ATCCTGCCCCTCTGGCCGGCTGAG
704 CA-CA-G-AG-GGGGACCCGGTCGATCCCCAGCTTACGCATAT-CTGCCCCTCTGGCCGGCTGAG
* * ** *
13274379 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACG
764 CACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
13274444 AAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTATGGCAGC-CATGCTGGGCTC
829 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * * * * *
13274504 GGGCATGTGCTGGAGCCGCATTTTTCTTCACCAGGGCACCATTGCCGGAGCATCGCTGGAGAACT
1 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACC
* * ** * *
13274569 TGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGGGTGA
66 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTACGCACATGATGTGCGA
* * *
13274634 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCGTCATCAAACCTTGAGAACTCACACC
130 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
13274699 CTCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGG
195 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
* *
13274763 GACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
260 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* * * * ** *
13274828 ATACTAAAAAAAATACAAGCATCATGTCTACCAAGTTTGGGG-CAAAAC-TCCATCTGAGAAAA-
325 ATGC-CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-GAAAAAAT
* * * **
13274890 TATAAAAAAACTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCACCTTGC
388 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
13274955 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCATT
453 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
13275020 GGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCA
518 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCA
* ** *
13275085 TCCCGTCTCTTTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTT
583 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-CC-GCTCATTTCGTCGGTTGGCTT
* *
13275150 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGTAGGATCGG
644 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA--G----GGT-GTA-G--CAG
* * * * * * *
13275215 CAGCACACAGAAGGGGACCCGGCCGATCCTCGGCTTTCGCAT-CCTGCCCCTCTGGCTGGCTGAG
699 CAGCACACAGAGGGGGACCCGGTCGATCCCCAGCTTACGCATATCTGCCCCTCTGGCCGGCTGAG
** ** * *
13275279 TGCCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
764 CACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
13275344 GAGTTCATTCCCAGTCTAACATCGAACCAGACTGAGGGTTGC-AGCAGCACATGCTCGGCTT
829 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGA-CAGCACATGCTGGGCTC
* * * * * * **
13275405 GGGCATATGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGAACC
1 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACC
* * * *
13275470 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGACCTGTGGGGTGTACGCACATGATGTTG-G
66 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-GCGGGGGGGTGTACGCACATGATG-TGCG
*
13275534 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-
129 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
**
13275598 CCCCTTGAAAGAGCATTTGAGATTTTACAGGTTTATTGCCAGTAGCAATTAAAGTGTCTGAAATG
194 CCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
* * * *
13275663 GTGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
258 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * *
13275728 GCATGCCAACAAAAGTACAAGGATCACATCTAACAAGTTT-GGGCCAAAACTTCTTCCGAAAAAA
323 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAA
* ** * *
13275792 TTTTAAAAAATCCCAAACCGTAAAAACCTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
387 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
13275857 CCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
452 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
13275922 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CTCTATCGATTCACGGCTTGCG
517 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCT-TATCGATCCACGGCTTGCG
*
13275986 CATCTCGTCTCTCTGGCC--C-----GCCCGCCCGCCCGCCCG----TTTCGTCGGTTGGCTTAG
581 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* *
13276040 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTAGCAGCA-CGCA-A-A
646 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG-TGTAGCAGCAGCACACAGA
* *
13276102 GGGGGACCCGGTCGATCCCCAGCTTACGCATCT-TGCCCCTCTGGCCGGCTGAGCACCTACACGC
710 GGGGGACCCGGTCGATCCCCAGCTTACGCATATCTGCCCCTCTGGCCGGCTGAGCACCCACACGC
*
13276166 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCC
775 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
13276231 CAGTCTAAGATCAAACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTC
840 CAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
*
13276281 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACC
1 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACC
* *
13276346 TGACCGGCGACATTGGGGTTCCGGTGATCGTGGGGGGC---GGGGTGTACGCACATGATGTGCGA
66 TGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGGCGGGGGGGTGTACGCACATGATGTGCGA
* * *
13276408 TGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCTTCATCAAAGCTCGAGAACTCACACC
130 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
13276473 CCCTTAACGAGC-TATTGAGATTTTAAAGGTTTGCAT-CCAGTAGCAATTAAAGTGTCTGAAATG
195 CCCTTAAAGAGCAT-TTGAGATTTTACAGGTTTGC-TGCCAGTAGCAATTAAAGTGTCTGAAATG
13276536 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
258 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * *
13276601 GCATGCCAAAAAAGTACAAGGATAATGTCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAAAT
323 GCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAAT
* * * *
13276666 TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGACGTCGTGC
388 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
13276731 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
453 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
13276796 GGCACATAGAAATATGAAGATGTGCCTAAATCCACCTACCACCTTATCGATCCACGGCTTGCACA
518 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCA
*
13276861 TCCCGTCTCTCTGGCCGACGTAGTGCTCGCTCGCCCACCCGCCCGCTCATTTCGTCGGTTGGCTT
583 TCCCGTCTCTCTGGCCGACGTAGTG--C-C-CGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
* *
13276926 AGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGT-T-GCAGCAGCACACAG
644 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTGTAGCAGCAGCACACAG
*
13276989 AGGGGGACCCGGTCGATCCCCAGCTTACGCATATC-GCCCCTCTGGCCGACTGAGCACCCACACG
709 AGGGGGACCCGGTCGATCCCCAGCTTACGCATATCTGCCCCTCTGGCCGGCTGAGCACCCACACG
13277053 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
774 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
13277118 CCAGTCTAAGATC-AGACCGGACCGAGGTTTACGATAGCACATGTTGGGCTC
839 CCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
*
13277169 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACC
1 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACC
* *
13277234 TGACCGGCGGCATTGGGGTTCCGGTGATCGTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
66 TGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGGCGGGGGGGTGTACGCACATGATGTGCGA
*
13277299 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACC
130 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
13277364 CCCTTAAAGAGC-TATTGAGATTTTAAAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
195 CCCTTAAAGAGCAT-TTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
* *
13277428 GGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTATG
259 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* * *
13277493 CATGCCAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAAAATTCTTTCAAAAAAAT
324 CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTTCTTTCGAAAAAAT
*
13277558 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGC
388 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
13277623 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
453 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
13277688 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCACA
518 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCA
*
13277753 TCCCGTCTCTCTGGCCGACGTAGT----GCTCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
583 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
13277814 ATACGGAGTTCATTCCCAGTCTAAG
648 ATACGGAGTTCATTCCCAGTCTAAG
13277839 CATACGGAGT
Statistics
Matches: 3002, Mismatches: 267, Indels: 150
0.88 0.08 0.04
Matches are distributed among these distances:
872 29 0.01
873 416 0.14
874 9 0.00
875 1 0.00
876 242 0.08
877 7 0.00
878 3 0.00
879 4 0.00
880 1 0.00
881 1 0.00
882 6 0.00
883 2 0.00
884 72 0.02
885 6 0.00
886 5 0.00
887 3 0.00
888 391 0.13
890 1 0.00
891 250 0.08
892 231 0.08
893 2 0.00
894 1 0.00
895 8 0.00
896 16 0.01
897 1 0.00
898 202 0.07
899 68 0.02
900 275 0.09
901 318 0.11
902 221 0.07
903 195 0.06
904 3 0.00
905 5 0.00
906 1 0.00
908 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTACGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
TGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTGTAGCAGCAGCACACAGAGGGGGA
CCCGGTCGATCCCCAGCTTACGCATATCTGCCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTT
CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
Found at i:13277848 original size:26 final size:26
Alignment explanation
Indices: 13277812--13277864 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13277802 GTTGGCTTAG
13277812 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13277838 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13277864 G
1 G
13277865 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13278481 original size:736 final size:741
Alignment explanation
Indices: 13277064--13278582 Score: 2395
Period size: 736 Copynumber: 2.1 Consensus size: 741
13277054 TCGTTTCATG
*
13277064 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
13277129 TCAGACCGGACCGAGGTTTACGATAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
66 TCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * *
13277194 CTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGT
131 CTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGC
*
13277259 GATCGTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
196 GATCGTGGGGGGCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
13277324 TTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTATTGAGATTTTA
261 TTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCTATTGAGATTTTA
*
13277389 AAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAA
326 AAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
13277454 ATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATAACG
391 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATAACG
* * *
13277519 TCTACCAAGTTTGGGGCCAAAAAATTCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
456 TCTACCAAGTTCGGGGCCAAAAAATACTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
13277584 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCTTAAG
521 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATAAAACTTCACGTGAAGGCTTAAG
* * * *
13277649 GGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
586 GGACCACTGTAGGAATTTACAAGCCATAAAAATGGCATCGGCACGCAAAAATATGAAGATGTGCC
* * * * *
13277714 TAAACCCACCTACCACCTTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTG-
651 TAAACACACCTACCACCGTATCAATCCACGGCTTGCACATCCCGTCTCTCTGCCCGACGTAATGC
*
13277778 C-T-C-GCCCGCCCGCTCATTTCGTC
716 CGTCCTGCCCGCCCACTCATTTCGTC
*
13277801 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
13277866 TCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTT
66 TCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * *
13277931 CTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGATCCTGATCGACGGCATTGGGGTTCTGGC
131 CTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGC
*
13277996 GATCG-GGGGGGCTGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
196 GATCGTGGGGGGCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
13278060 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGC-ATTTGAGATTTT
261 TTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCTA-TTGAGATTTT
* * *
13278124 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAA
325 AAAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
13278189 AATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
390 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATACAAGGATAA
* * * *
13278254 CGTCTACCAAGTTCGGGG-CAAAGACTACTTCCAAAAAAATTTTTAAAAATCCTGAACCGTAAAA
454 CGTCTACCAAGTTCGGGGCCAAAAAATACTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * * *
13278318 AGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTA
519 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATAAAACTTCACGTGAAGGCTTA
* * *
13278383 AGGGACCATTGTAGGAATTTACATGCCATAGAAATGGCATCGGCACGCAAAAATATGAAGATGTG
584 AGGGACCACTGTAGGAATTTACAAGCCATAAAAATGGCATCGGCACGCAAAAATATGAAGATGTG
* **
13278448 CCTAAACATACCTACCACCGTATCAATCCACGGCTTGCGTATCCCGTCTCTCTGCCCGACGTAAT
649 CCTAAACACACCTACCACCGTATCAATCCACGGCTTGCACATCCCGTCTCTCTGCCCGACGTAAT
*
13278513 GCCCGTCCGCCTGCCCGCCCACTCGTTTCGTC
714 G-CCGT---CCTGCCCGCCCACTCATTTCGTC
13278545 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
13278583 ATTGAAGCAA
Statistics
Matches: 712, Mismatches: 60, Indels: 13
0.91 0.08 0.02
Matches are distributed among these distances:
735 1 0.00
736 438 0.62
737 214 0.30
738 1 0.00
739 1 0.00
743 1 0.00
744 56 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (741 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGC
GATCGTGGGGGGCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCTATTGAGATTTTA
AAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATAACG
TCTACCAAGTTCGGGGCCAAAAAATACTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATAAAACTTCACGTGAAGGCTTAAG
GGACCACTGTAGGAATTTACAAGCCATAAAAATGGCATCGGCACGCAAAAATATGAAGATGTGCC
TAAACACACCTACCACCGTATCAATCCACGGCTTGCACATCCCGTCTCTCTGCCCGACGTAATGC
CGTCCTGCCCGCCCACTCATTTCGTC
Found at i:13281423 original size:900 final size:900
Alignment explanation
Indices: 13277801--13281499 Score: 5048
Period size: 901 Copynumber: 4.1 Consensus size: 900
13277791 TCATTTCGTC
* * *
13277801 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA
1 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* *
13277866 TCAGATCG-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGCATTTT
66 TCGGA-CGAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
13277930 TCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGATCCTGATCGACGGCATTGGGGTTCTGG
130 TCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGG
* *
13277995 CGATCG-GGGGGGCTGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
195 CGATCGAGGGGGCCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
** *
13278059 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTT
260 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
13278124 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAA
325 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
** *
13278189 AATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
390 AATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * * * *
13278254 CGTCTACCAAGTTCGGGG-CAAAGACTACTTCCAAAAAAATTTTTAAAAATCCTGAACCGTAAAA
455 CGTCTACCAAGTTTGGGGCCAAA-AATCCTTCCAAAAACATTTTAAAAAATCCCGAACCGTAAAA
* * * *
13278318 AGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTA
519 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGGGAAGGCTTA
* * * * * *
13278383 AGGGACCATTGTAGGAATTTACATGCCATAGAAATGGCATCGGCACGCAAAAATATGAAGATGTG
584 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
** * * * * *
13278448 CCTAAACATACCTACCACCGTATCAATCCACGGCTTGCGTATCCCGTCTCTCTGCCCGACGTAAT
649 CCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
*
13278513 GCCCGTCCGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
714 GCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * ** * *
13278578 CTAAGATTGAAGCAAATCAAAGGTTGTGGCAATA-GATTGGCAGCACGTAGAGGGGGACCCGACC
775 CTAAGATCGGACCAGATCAAGGGTTGGGGTAGCAGGATTGGCAGCACATAGAGGGGGACCCAACC
* * * * * *
13278642 GATCCCCGGCTTGCGA-ATCCTGCCCCTCTGGTCGGTTGAGCGCACGCACGCTCGTTTCGTG
840 GATCCCCGACTTGC-ACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATG
* * *
13278703 GGTTGACTTAGGCATATAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTCCAGTCTAAGA
1 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
13278768 TCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCATTTTT
66 TCGGACGAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* ** * *
13278833 CTTCGTCGGGGCACCATCGTTGGAGCATCGCCGTAGATCCTGACCGACGACATTGGGGTTCTGGC
131 CTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGGC
* *
13278898 GATC-AGTGGGCC-AGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
196 GATCGAGGGGGCCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
13278961 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTTAAGAGCATTTGAGATTTTT
261 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
13279026 CAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
326 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
13279091 ATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTTGTTCATGCCAAAAAAAATACAAGCATCA
391 ATCTTGTACACTTCGAGTTTTTAGCTGAAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * *
13279155 CGTCTACTAAGTTTAGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAAATCCCGAACCGTAAAA
455 CGTCTACCAAGTTTGGGGCCAAAAATCCTTC-CAAAAACATTTTAAAAAATCCCGAACCGTAAAA
* * **
13279219 AGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTA
519 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGGGAAGGCTTA
* *
13279284 AGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTG
584 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
* *
13279349 CCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGT
649 CCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * *
13279414 GCTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCGTTCCCAATCTAA
714 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * * *
13279479 GATCGGACTGGACCGAGGGAT-GCGTCAGCAGGATCGGCAGCACGTAGAGGGCGACCCAGCCGAT
779 GATCGGACCAGATCAAGGGTTGGGGT-AGCAGGATTGGCAGCACATAGAGGGGGACCCAACCGAT
* * * ** * * * *
13279543 CCTCGACTTGCGCATTCTGCCCCTCTGGCCGGCTGAGCGGTCACATGCTCGTTTTATG
843 CCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATG
*
13279601 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * *
13279666 TCGAATTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
66 TCGGACGAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
13279731 CTTCGTCGGGGTACCAT---C---G--T---CGGAGAACCTGACCGGCGACATTGGGGTTCCGAC
131 CTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGGC
* * *
13279785 GATTGAGGGGACCGGGGGCGTGTGCA-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
196 GATCGAGGGGGCCGGGGGGGTGTG-AGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
13279849 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATCTGAGATTTT
260 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
13279913 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTTAAATGGTCACAA
325 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
13279978 AATCTTGTACACTTCGAGTTTTTAGCTG-AATGTTTTTGTGCATGCCAAAAAAAATACAAGGATC
390 AATCTTGTACACTTCGAGTTTTTAGCTGAAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * *
13280042 ATGTCTACCAAGTTTGTGGCCAAAAATCCTTCCAAAAACATTTTAAAAAATCTCGAACCG-ATAA
454 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAACATTTTAAAAAATCCCGAACCGTA-AA
* * * *
13280106 AAGTTTAAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATAAAACTTGACGGGATGGCTT
518 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGGGAAGGCTT
* *
13280171 AAGGGACCATTGTATGAATTTACAAGCCATAAACATGGCATTGGCACGTAGAATATATGATGATG
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA-ATATGAAGATG
* * * * *
13280236 TGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCTTA
647 TGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* *
13280301 GTGCCCGCCCGCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
712 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * ** * ** ***
13280366 AAGATTGGACCAGATCGAGTGTTACGGTAGCAAGATCAGCAACATGTAGAGGGGGACCCGGTCGA
777 AAGATCGGACCAGATCAAGGGTTGGGGTAGCAGGATTGGCAGCACATAGAGGGGGACCCAACCGA
** * * *
13280431 TCCCCGACTTGTGCATCCTGCCCATCTGGCCGGCTGAGCGCCCGTACGCTCA-TTTCGTG
842 TCCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT-AGTTTCATG
* *
13280490 GGTTGACTTGGGCATATGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
13280555 TCGGACG-GAATCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGTATGTGCTGTTGCCGTATTTT
66 TCGGACGAG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * * *
13280619 TCTTCACCGAGGCACCATCGCCGAAGCATCGTCGGAGAACCTGACC-AGCGGCATTGGGGTTC-A
130 TCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-CGACATTGGGGTTCTG
* *
13280682 GCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
194 GCGATCGAGGGGGCC-GGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
13280747 ATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAACGAGCATTTGAGATT
258 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
13280812 TTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCAA
323 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
13280877 AAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCAAGCCAACAAAAATACAAGGAT
388 AAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGAT
*
13280942 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAACATTTTAAAAAATCCCGAATCGTAAA
453 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAACATTTTAAAAAATCCCGAACCGTAAA
* * * *
13281007 AAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTCGCCATAAAACTTGACGGGATGGCTT
518 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGGGAAGGCTT
* *
13281072 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGAGAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
* *
13281137 GCCTAAACCCACCTACCACCATATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACTTAG
648 GCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * *
13281202 TGCCCGCCCGCCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTA
713 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
13281267 AGATCGGACCGGATTAAGGGTTGGGGTAGCAGGATTGACAGCACATAGAGGGGGACCCAACCAAT
778 AGATCGGACCAGATCAAGGGTTGGGGTAGCAGGATTGGCAGCACATAGAGGGGGACCCAACCGAT
* * * * * * *
13281332 CCCAGGCTTTCACATCCCGCCCCTCTGACCGGCTGAGTGCCCGCACGCTAGTATT-ATA
843 CCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGT-TTCATG
* *
13281390 GGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGA
1 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* *
13281454 TCGAACGAGACCGAGGGTTGCGACAGCACATGCTGGGCTAGGGCAT
66 TCGGACGAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
13281500 ATTGGCCCCC
Statistics
Matches: 2473, Mismatches: 285, Indels: 81
0.87 0.10 0.03
Matches are distributed among these distances:
887 39 0.02
888 305 0.12
889 439 0.18
890 4 0.00
892 2 0.00
895 1 0.00
896 1 0.00
897 67 0.03
898 209 0.08
899 62 0.03
900 382 0.15
901 765 0.31
902 197 0.08
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACGAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGGC
GATCGAGGGGGCCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAACATTTTAAAAAATCCCGAACCGTAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGGGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCAGATCAAGGGTTGGGGTAGCAGGATTGGCAGCACATAGAGGGGGACCCAACCGATCCC
CGACTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATG
Found at i:13281452 original size:25 final size:26
Alignment explanation
Indices: 13281403--13281452 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13281393 TGACTTAGGT
13281403 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
13281429 ATACGGAGTTCATT-CCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
13281453 ATCGAACGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:13283209 original size:886 final size:880
Alignment explanation
Indices: 13281498--13288289 Score: 7871
Period size: 909 Copynumber: 7.6 Consensus size: 880
13281488 GGGCTAGGGC
**
13281498 ATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
1 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
13281563 TTATAGGTTTGCTGTCGGTAGCCATTAAAGTGTCTTAAATGGGGATACTTTTTTCAAATGGTCAC
66 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
*
13281628 AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
131 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
** * * *
13281693 CACGTCTAAAAAATTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAA
196 CACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* *
13281758 AAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCT
260 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
13281823 TCAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGTCATGCA-AAAATATGAAGAT
325 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAA-ATGAAGAT
* * * *
13281887 GTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCTTCCCGTCTCTCTAGTCGACGT
389 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * *
13281952 AGT-----GCCTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATATGAAGTTCA
454 AGTGCGCCGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *
13282012 TTCCCAGTCTAAGATCAGATCC-GACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
519 TTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * *
13282076 GACCCGACCGATCCCCAGCTTATGCATCCTGCCCCTCTGGACGGCTGAGAGCCCGCACGCTCGTT
583 GACCCGACCGATCCCC-GCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* ** * ** * *
13282141 TTGTTTGTTGACTTAGGCATATGGAGTTCA-TCACCAGTCTAAGATCGGATTGGACCGAGGGTTG
647 TCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CTTGTCTAAGATCGGACTGAACCGAGGGTTG
* * * * * * *
13282205 CAGCAGTACATGCTAGGCTCGGGCATGTGCTGGTGCCACACTTTTCTTCATGGGGGCACCATCGT
711 CA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * * * *
13282270 CGGAGCATCACCGTAGAACCTGTCCGACGGCAATGGGGTTCCGACGATCGGGGGTGCCAAGGGGG
775 CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGG-GCCAGGGGGG
* *
13282335 TGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATT
839 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
13282377 ATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGAATTTGAGATT
1 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13282442 TTACAGGTTTGTTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCAC
66 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* * ** * *
13282507 AAAATCTTGTACAATTTGAGTTTTTAGCTGAATTTTTTTGTAAATGTCAAAAAAAATACAAGGAT
131 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * ** * *
13282572 CACGTCTACCAAGTTTCGGCCCAAAAATCCTTAGGAAAAAATTTTAAAAAATCCCGAACCGCAAA
196 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
* *
13282637 AAGTTTCGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
261 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
13282702 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGT
326 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGT
* * *
13282767 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGATGTAG
391 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * *
13282832 TGCCCGCCAGCCCACCCGCCCGCTCGCCCGCTCATGTCGTCGGTTGGCTTAGGCATACAGAGTTC
456 TG--CGCC-GCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * *
13282897 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAGCAGCACACAGTGGGG
518 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * *
13282962 GACCCAACCGATCTCCGTCTTATGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCATT
583 GACCCGACCGATCCCCG-CTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* * * *
13283027 TTGTGGTTTGACTCAGGCATACGGAGTTCATTCCTTGTGTAAGATCGGACTGAACCGAGGGTTGC
647 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAAGATCGGACTGAACCGAGGGTTGC
* * * *
13283092 ATAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACC
712 A-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * *
13283157 GGAGCATCATCGGAGAACCTGACCGATGGCATTGGGGTTTCGACGATCGGGGGGTTCGAAGGGGG
776 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGG--CCAGGGGGG
* *
13283222 TGTGCGCACATGATGTGTGATGGGTGCTGTTACTTGGCCCTT
839 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
13283264 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAACAACATTTGAGATT
1 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
13283329 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATAGGGACACTTTTTTCAAATGGTCAC
66 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* *
13283394 AAAATCTTATACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
131 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * *
13283458 CATGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTTAAAAAATC-CTGAAACGTAG
196 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAA
*
13283522 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
260 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
13283587 TAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTAGCATGTAGAAATATGAAGATG
325 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATG
*
13283652 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCC-AGCGT
390 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGT
** * ** * *
13283716 AGT-----G-----CC-TTC-C-CGCCCGCTCGTTTCATCAATTGGCTTACGCATATGGAGTTCA
454 AGTGCGCCGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * * * * * * * *
13283768 TTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCAGCAGCAGTATTGACAGTACGTAGAGGGGG
519 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
** * ** * * *
13283833 ACCCGATTGATCCCCGACTT-GGCATCCCACCCCTCTGGCTGGTTGAGCGCCCGCACGC-CGTTT
584 ACCCGACCGATCCCCG-CTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTT
* *
13283896 CGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAG-CATATGGAGTTCATTCCAGGTC
648 CGTGGGTTGACTTAGGCATACGGAGTTCATT-CC--T-T--GTC-TA---AG---A-T-C-GGAC
*
13283960 TAAGATCGGACCAGACCGAAGGTTACGACAGCACATGCTGGGC-CTGGGCATGTGCTGGTGCCGC
697 T--GA----ACC-GA--G--GGTTGC-ACAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGC
***
13284024 ATTTTTCTTCGTCGGGGCACCATCATTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGT
749 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGT
* * * * * *
13284089 TCCGACGATCGATGAGGCCGGGGGGTGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGAC
814 TTCGACGATCG-GGGGGCCAGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
13284154 CCTT
877 CCTT
** *
13284158 ATATTCACCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
1 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
13284223 TTACAGGATTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTAC
66 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* * * * *
13284288 AAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTACATGCTAACAAAAATACAAGTAT
131 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * ** * *
13284353 CACATCTACCAAGTTTGGGGCCAAAATTACTTGTG-AAAAATGTTTAAAAAATCCCGAACCATAA
196 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT-TTTAAAAAATCTCGAACCGTAA
*
13284417 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
260 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
13284482 TAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGTAGAAATATGAAGATG
325 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATG
* * * * * *
13284547 TACCCAAACGCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTA
390 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* ** * * * *
13284612 GTGC-CCACCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAGATGGAGTTCAT
455 GTGCGCCGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * ** * * *
13284676 TCCGAGTCTATGATCAGACCGGACCAAGGGTTACGGCAGCAAGATTGATAGCACGTAAAAGGGGA
520 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * *
13284741 CTCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCATTTC
585 CCCGACCGATCCCC-GCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTC
*
13284806 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-CATATGGAGTTCATTCCCAGTAT
649 GTGGGTTGACTTAGGCATACGGAGTTCATT-CC--T-T--GTC-TA---AG---A-T--C-G---
* * * * * *
13284870 AAGATCGGATCAGACCGAGGGTTGCGGCAGCAGATACTGGGCTCGGGCATGTGTTGGTGCTGCAT
694 --GA-C---TGA-ACCGAGGGTTGC-ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * ** **
13284935 TTTTCTTCGTCGGGACACCATCGTCGGAGCATCGTCGGAGAACCTGAATGACGGCATTGGGG-TT
751 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTT
* *
13284999 CTGACGATCGGGTGGGCCGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
816 C-GACGATCGGG-GGGCC-AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
13285064 CTT
878 CTT
* *
13285067 ATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACAGCCCCTTAAAGAGCATTTGAGATT
1 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
13285132 TTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGATATTTTTTTCAAATGGTAAC
66 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
13285197 AAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTATGTGCATGCCAAAAAAAATACAAGGCT
131 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * * * * **
13285262 CACATCTACCAAGTTTGAGGCCAAAAATCCATCCAAAAAAATTTTTAAAAATCTCGAACTGCGAA
196 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
* *
13285327 AAGTTTCAAAAATCATGAAAAATAGAAAACGACTCGACTTGCCATGAAACTTCACGTGAAGGCTT
261 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
**
13285392 AAGGGACCATTGTATGAATTTACAAGTAATAAAAATGGCATTGGCATGCA-AAAATATGAAGATG
326 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAA-ATGAAGATG
* * * * *
13285456 TGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTTCGCATCTCGTCTTTCTGGCCGGCGTA
390 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* ** * *
13285521 GTGC-CCG----CTCGCATGCCCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
455 GTGCGCCGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
13285581 TCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGTAGCATGTAGAGGGGGA
520 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
** * * *
13285646 CCCCG-TTGATCCTCGCCATACGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTT
585 -CCCGACCGATCCCCG-CTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTT
**
13285710 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTGATTCCCAATCT
648 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAAG-AT-CGGA-CTG-----------
* * * * * *
13285775 AAGATCAGGTCAGATTGAGGGTTACGACAGTA-ATACTGAGCTCGGCCATGTGCTGGTGCCGTAT
699 -A-A-C----C-----GAGGGTTGC-ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
13285839 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTT
751 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTT
* * * *
13285904 CGGCGATC-GGGGG-AATGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAATTGGCCCT
816 CGACGATCGGGGGGCCA-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
13285967 T
880 T
* *
13285968 ATATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATT
1 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
13286033 TTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTATAATGGGGACACTTTTTTCAAATGGTCAC
66 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* *
13286098 AAAATCTTGTACACTTTGAGTTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGA
131 AAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
13286163 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAGAAATTTTAAAAAATTTTGAACCGTA
195 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAATCTCGAACCGTA
* * * *
13286227 AAAAGTTTCGAAAATCGTGAACAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
259 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * * * * *
13286292 ATAAGGGACCATTGTATGTATTTACAAGCCATCAAAATGGCATTGGCACGTAGAAATATGAGGAT
324 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGAT
* * * *
13286357 GTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCAACAT
389 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * **
13286422 AGTGC-CTG----CCCG--C-CT-GCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCA
454 AGTGCGCCGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** *
13286478 TACCCAGTCTAAGATCAAACCGGACTTAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
519 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * *
13286543 ACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGG-TGGCTGAGCGCATC-CACGCTCATT
584 ACCCGACCGATCCCC-GCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCATT
* * * ** * * * *
13286606 TGGTGGGTTGACGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC
647 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAAGATCGGACTGAACCGAGGGTTGC
* ** * * *
13286671 GACGGCACATGCTTCGCTCGGGCATGTGCTGGTGCCGTAGTTTTCTTCGTCGGGCCACCATCGCC
712 -ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* ** * * *
13286736 AGAGCATCATTGGAGAACCTGACCGATGGCATTGGGGTTTCGGCGATCGGGGGGGGCCGGGGGGG
776 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC--GGGGGGCCAGGGGGG
*
13286801 TGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTT
839 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
13286843 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGGTT
1 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13286908 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGTACACTTTTTTCAAATGGTCAC
66 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* *
13286973 AAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTTATGCATACCAACAAAAATACAAGGA
131 AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
13287037 TCACGTCTGCCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
195 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
13287102 AAAGTTTCAAAAATCATGAAAAATAGAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
260 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
13287166 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA-AAAATATGAAGAT
325 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAA-ATGAAGAT
** * *
13287230 GTGAATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCAT
389 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
13287295 AGTGC-CCG----CCCGCCCG-TCCACCCGCTCGTTTCGTCGGTTGGCTTTGGCATATGGAGTTC
454 AGTGCGCCGCCCACCCGCCCGCT-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * * * *
13287354 ATTCCCAGTCTAAGATTGGACCGAATC-ATGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGG
518 ATTCCCAGTCTAAGATCAGACCGGACCGA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * *
13287418 GGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTAAGCACCCGCACGCTCAT
582 GGACCCGACCGATCCCC-GCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
**
13287483 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTTCATTCCCACT
646 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAAG-AT-CGG-----------A--
* * *
13287548 CTAAGATCGAACTGGACTGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGC
696 C-----T-GAAC----C-GAGGGTTGC-ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * **
13287613 ATTTTTCTTCGTC-GGGCACCATCACTGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGG-
749 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGT
*
13287676 TTCCAGCGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
814 TTCGA-CGATCG-GGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
13287740 CCTT
877 CCTT
*
13287744 ATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
1 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
13287809 TTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGAC
66 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
13287874 AAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTTTGCACGCCAAGAAAAATACAAGGAT
131 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
13287938 CACTTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAAATTTTAAAAAATCTCGAATCGTAAA
196 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
** ** * *
13288003 AAGTTTTGAAAATTGTGAAAAATACAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
261 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *** *
13288068 AAGGAACCATTGTATGAATTTACAAGCCATAAACATGGCATTGACACATAGAAATATGAAGATGT
326 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGT
* * *
13288133 GCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGATGTAG
391 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * *
13288198 T-----G----CCCGCCCG-T---CCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGCTCATT
456 TGCGCCGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
13288250 CCCAGTCTAAGAT-TGAATCGGACCAAGGGTTGCGGGAGCA
521 CCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCA
13288290 CATGCTGGGT
Statistics
Matches: 5123, Mismatches: 627, Indels: 312
0.85 0.10 0.05
Matches are distributed among these distances:
868 31 0.01
869 34 0.01
870 97 0.02
871 15 0.00
872 98 0.02
873 162 0.03
874 125 0.02
875 195 0.04
876 2 0.00
877 127 0.02
878 283 0.06
879 193 0.04
880 3 0.00
881 2 0.00
882 1 0.00
883 5 0.00
885 8 0.00
886 594 0.12
887 184 0.04
889 3 0.00
890 2 0.00
891 2 0.00
892 3 0.00
893 75 0.01
894 292 0.06
895 277 0.05
896 6 0.00
897 74 0.01
898 117 0.02
899 7 0.00
900 115 0.02
901 536 0.10
902 283 0.06
903 54 0.01
904 145 0.03
905 194 0.04
906 4 0.00
907 102 0.02
908 41 0.01
909 604 0.12
910 17 0.00
911 1 0.00
913 2 0.00
914 4 0.00
915 1 0.00
916 1 0.00
917 1 0.00
919 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (880 bp):
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
TGCGCCGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGACCGATCCCCGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAAGATCGGACTGAACCGAGGGTTGCACAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
ATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCAGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
Found at i:13283947 original size:26 final size:26
Alignment explanation
Indices: 13283911--13283963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13283901 GTTGACTTGG
13283911 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCAGGTCTAA
*
13283937 GCATATGGAGTTCATTCCAGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
13283963 G
1 G
13283964 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:13284850 original size:26 final size:26
Alignment explanation
Indices: 13284820--13284872 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13284810 GTTGACTTAG
*
13284820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
13284846 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
13284872 G
1 G
13284873 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:13285767 original size:26 final size:26
Alignment explanation
Indices: 13285725--13285777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13285715 GTTGACTTAG
* *
13285725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
*
13285751 GCATACGGAGCTGATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
13285777 G
1 G
13285778 ATCAGGTCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:13287539 original size:26 final size:26
Alignment explanation
Indices: 13287500--13287552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13287490 GTTGACTTAG
* *
13287500 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCACTCTAA
13287526 GCATACGGACTTCATTCCCACTCTAA
1 GCATACGGACTTCATTCCCACTCTAA
13287552 G
1 G
13287553 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCACTCTAA
Found at i:13288572 original size:709 final size:703
Alignment explanation
Indices: 13287526--13289692 Score: 3147
Period size: 703 Copynumber: 3.1 Consensus size: 703
13287516 CCCAGTCTAA
* * *
13287526 GCATACGGA-CTTCATTCCCACTCTAAGATCGAACTGGACTGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGC-TCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATGCTGG
* * *
13287590 GCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCG-TCGGGCACCATC-ACTGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGC-GTATTTTTCTTCGTTGGGGCACCATCGA-T-GAGCAT--CCGGA
*
13287653 GAACCTGACCGGTGGCATTGGGGTTCCAGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGT
125 GAACCTGACCGGTGGCATTGGGGTTCCAGCGATCGA-GGGGCCGGGGGGTGTGCACACATGATGT
*
13287718 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13287783 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAA
*
13287848 TGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
13287912 TTGCACGCCAAGAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAA
384 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTT-CGAAAA
* * *
13287977 AATTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATTGTGAAAAATACAAAACGAGTCATCT
448 AATTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13288042 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAACATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA-ATGGC
* *
13288107 ATTGACACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGC
577 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13288172 GCATCCCGTCTCTTTGGCCGATGTAGTGCCCGCCCGTCCACTCATTTCGTCGGTTGGCTTAG
642 GCATCCCGTCTCTTTGGCCGATGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
13288234 GCATACGGAGCTCATTCCCAGTCTAAGATTGAA-TCGGACCAAGGGTTGCGGGAGCACATGCTGG
1 GCATACGGAGCTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTTACGGCAGCACATGCTGG
*
13288298 GTTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTTGGGGCACCATCGTATGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTG-CGTATTTTTCTTCGTTGGGGCACCATCG-ATGAGCATC--CGGAG
*** * *
13288363 AACCTGACCGACAGCATTGGGGTTCCAGCGATCG-GTGGGCCAGGGTGGTGTACACACATGATGT
126 AACCTGACCGGTGGCATTGGGGTTCCAGCGATCGAG-GGGCC-GGGGGGTGTGCACACATGATGT
*
13288427 GCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* **
13288492 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCAATTAAAGTGTCTGAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAA
13288557 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
13288622 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAA-CTCC-T-GAAAAA
384 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCGAAAAA
**
13288684 ATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
449 ATTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
13288749 GCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCA
*
13288814 TTGGCA-AGTAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATCCACGGCTTGC
578 TTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
13288878 GCATCCCGTCTCTCTGGCCGGCATAGTGCTCGTCTGCCCGCCCGCCCGCTCGTTTCGTCAGTCGG
642 GCATCCCGTCTCTTTGGCC-G---A-TG-TAG--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
13288943 CTTAG
699 CTTAG
* * * * *
13288948 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGCTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
13289013 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-T---CA----GAGAACT
66 CTCGGGCATGTGCTGGTG-CGTATTTTTCTTCGTTGGGGCACCATCGATGAGCATCCGGAGAACC
* * *
13289070 TGATCGGTGGCATTGGGGTTCC-GACGATCGAGGGGCCGGGGGGGTGTGCACGCATGATATGCGA
130 TGACCGGTGGCATTGGGGTTCCAG-CGATCGAGGGGCC-GGGGGGTGTGCACACATGATGTGCGA
* * *
13289134 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCATACCTCAAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
13289199 CTCTTAAATAGCATTTGAGATTTTACAGGTTTGC-AGCCAGTAGCCGTTAAAGTGTCTGAAATGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA-CCAGTAGCCGTTAAAGTGTCTGAAATGG
* *
13289263 GGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTATG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
*
13289328 CATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAACCTCCTTCTGAAAAAAT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTC-GAAAAAAT
* *
13289393 TTTAAAAAATCCCGAA-CAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
451 TTTAAAAAATCTCGAATC-GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
13289457 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAATGGCAT
** * * * *
13289522 TGGCACGCAGAAATATGAAGCTGTACCTAAACCCACCTACCACCTTATCGATACACGGCTTGCGC
579 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** *
13289587 ATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
644 ATCCCGTCTCTTTGGCCGATGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
13289647 GCATA-GGAGTTCATTCCCAGTATAGGATCGGA-TAGGACCGAGGGTT
1 GCATACGGAGCTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTT
13289693 GCGACAATAG
Statistics
Matches: 1321, Mismatches: 105, Indels: 76
0.88 0.07 0.05
Matches are distributed among these distances:
697 1 0.00
698 35 0.03
699 38 0.03
701 2 0.00
702 3 0.00
703 283 0.21
704 5 0.00
705 2 0.00
706 204 0.15
707 208 0.16
708 89 0.07
709 258 0.20
710 57 0.04
711 3 0.00
712 3 0.00
714 129 0.10
715 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (703 bp):
GCATACGGAGCTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCGTATTTTTCTTCGTTGGGGCACCATCGATGAGCATCCGGAGAACCT
GACCGGTGGCATTGGGGTTCCAGCGATCGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCGAAAAAATTTTAA
AAAATCTCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACA
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTTTGGCCGATGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:13289842 original size:26 final size:26
Alignment explanation
Indices: 13289813--13289883 Score: 142
Period size: 26 Copynumber: 2.7 Consensus size: 26
13289803 AGGCATGCGG
13289813 AGTTCATTCCCAGTCTAAGCATATGA
1 AGTTCATTCCCAGTCTAAGCATATGA
13289839 AGTTCATTCCCAGTCTAAGCATATGA
1 AGTTCATTCCCAGTCTAAGCATATGA
13289865 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
13289884 ATCGGACTGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATATGA
Found at i:13291098 original size:566 final size:565
Alignment explanation
Indices: 13289991--13291105 Score: 1743
Period size: 566 Copynumber: 2.0 Consensus size: 565
13289981 ACCGGCAGCA
* *
13289991 TTGGGGTTCCGACGATCAGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATAGGTGTTGGTAC
1 TTGGGGTTCCGACGATCAGGGGGCCGAGGGGGTGTGCGCACATGATATGCGATAGGTGCTGGTAC
* * **
13290056 TTGTCCCTTATATTGGCCCCCTATCCCTGATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
66 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * *
13290121 TTTGAGCTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCA
131 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTTGCA
* *
13290186 AATGGTCATAAAATATTGTACACTATGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
196 AATGGTCACAAAATATTGTACACTATGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
13290251 TGCATGGATCATGTCTACCAGGTTAGGGGAAAAAACTCCTTCCAAAAAATTTTTAAAAAATCTTG
261 TACAAGGATCATGTCTACCAAGTTAGGGGAAAAAACTCCTTCCAAAAAATTTTTAAAAAATCTGG
* **
13290316 AACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGCTATCTTGCCATGAAACTTCACG
326 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCTATCTTGCCATGAAACTTCACG
*
13290381 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATA
391 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
13290446 TGAAGATGTGTCTAAACCCACCTACCACTCTATCAATCCACGACTTGCGCATTCCATCTCTCTGG
456 TAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCATCTCTCTGG
* * * *
13290511 TCGACGTAGTGCTCGCCCGCCCGTCCGCTCGCCCTCCCGCTCGTT
521 CCGACGTAGTGCCCACCCGCCCGCCCGCTCGCCCTCCCGCTCGTT
* * * *
13290556 TTGGGGTTCCGACGATC-GAGGGGCCGGGGGGGGTGTGTGCGCATGATATGCGATGGGTGCTGGT
1 TTGGGGTTCCGACGATCAG-GGGGCC-GAGGGGGTGTGCGCACATGATATGCGATAGGTGCTGGT
* *
13290620 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAATAG
64 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
*
13290685 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTTT
129 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTTG
*
13290750 CAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
194 CAAATGGTCACAAAATATTGTACACTAT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* ** *
13290814 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTTTAAAAAAT
258 AAATACAAGGATCATGTCTACCAAGTTAGGGGAAAAAACTCC-TTCCAAAAAATTTTTAAAAAAT
* *
13290878 CTGGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG-TCATTTTGCCATTAAACT
322 CTGGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCT-ATCTTGCCATGAAACT
13290942 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
386 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
13291007 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
451 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCATCTC
* *
13291072 TCTGGCCGGCGTATTGCCCACCCGCCCGCCCGCT
516 TCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCT
13291106 TGTCTCGTCG
Statistics
Matches: 499, Mismatches: 46, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
564 1 0.00
565 25 0.05
566 464 0.93
567 9 0.02
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (565 bp):
TTGGGGTTCCGACGATCAGGGGGCCGAGGGGGTGTGCGCACATGATATGCGATAGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTTGCA
AATGGTCACAAAATATTGTACACTATGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
TACAAGGATCATGTCTACCAAGTTAGGGGAAAAAACTCCTTCCAAAAAATTTTTAAAAAATCTGG
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCTATCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCATCTCTCTGG
CCGACGTAGTGCCCACCCGCCCGCCCGCTCGCCCTCCCGCTCGTT
Found at i:13291321 original size:26 final size:26
Alignment explanation
Indices: 13291285--13291357 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
13291275 GTTGACTTAG
*
13291285 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13291311 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13291337 GCATACGGAGTTCATTCCCAG
1 GCATACGGAGTTCATTCCCAG
13291358 ATCAAGGGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13296575 original size:714 final size:717
Alignment explanation
Indices: 13293816--13296961 Score: 3890
Period size: 714 Copynumber: 4.4 Consensus size: 717
13293806 GTTTGGGGCC
* * * * * *
13293816 AAAAAGTTTTGAAAATCGTGAATAATAGAAAATGAGTCGTCTTGCCATGCAACTTAACGTCAAGG
1 AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * *
13293881 CTTGAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGGATGCAAAAAATATGAAG
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-AAGAAATATGAAG
* * *
13293946 ATGTGCCTAAAGCCACCTACCACCCTATGGATCCACGGCT-TGCGATCCCGTCTCTCTTGCCGGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGTGC-ATCCCGTCTCTCTGGCCGGC
* * * * *
13294010 GTAATGCCCGTCCGTCCGCCCACCTGCCCACCCGCCTACTCGTTCGTTTTATCGGTTGGCTTAGG
194 GTAGTGCCCG--C--CCGCCCGCCCGCCCA--C-TC-A-T--TTCG-----TCAGTTGGCTTAGG
* *** * **
13294075 CATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGAAAAATGGTTGATGCAGCACATGCTGAG-
243 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT-AGC
* * * * *
13294139 CTCGAGCATGTGCTGGTGCCACGTTTTTCTTCACCGGGGCACCATCATCAGAGCATCG-CTGGAG
307 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* * ** *
13294203 AACCTGATCGGCGACATTAAGGTTCCGACGATCGGGGGGCGGGGGGGGTG-CACACATGATGTGC
371 AACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCGGGGGGGGTGTGACACATGATGTGC
* * * *
13294267 GATGGGTGCCAGCT-CTTGGCCCTTATATTGGCCCCGTATCCCTCATCAATCCTCGAGAACTCAC
436 GATGGGTG-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * ** *
13294331 ACCCCCTCAAAGAGCATTTGGGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTAAAAT
500 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAAAT
*
13294396 GGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
565 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
* * *
13294461 GTGCCTGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGG-CAAAACTCC-TTCTGAAA
629 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
13294524 AAATTTTAAAAAAT-TCTGAACTGT
693 AAATTTTAAAAAATCTCTGAACTGT
* * * * * * *
13294548 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTACCATGCAAGTTCATGTGAAGG
1 AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * *
13294613 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAGATATTAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGA
*
13294678 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT-TACGCATCCCGTCTCTCTGGCCGGC
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGT--GCATCCCGTCTCTCTGGCCGGC
* ** * * * *
13294742 GCAGTGCCCGCCTACCTGCCTG----CTCATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTC
194 GTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * *
13294803 CCAATCTAAGATCGAACCGGATCGATGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
259 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGCCTCGGGCATGTGCTGGT
** * * *
13294868 GTAGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATT
324 GCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACATT
*
13294933 GGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
389 GGGGTTCCGACGATCGGGGGGCGGGGGGGGTGTG-ACACATGATGTGCGATGGGTGCTGGTACTT
* *
13294998 GGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGACCTCACACCCCCTTAAAAAGCATT
453 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATT
* * *
13295063 TGA-ATTTTACAGGGTTTGCAGCCAGTAGCTATTAAAGTGTCTGAAATGGGCACACTTTTTTCAA
518 TGAGATTTTACA-GGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * *
13295127 AT-GTCACAAAATCTTGTACGCTTCGAGTTTTTAGGTGA-ATTTTTTGTGCATG-CAACCAAAAA
582 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAA-CAAAAA
** * * *
13295189 TACAAGGATCACGTCTACCAAGTTTTTGGCCAAAA-TACTTTCCAAAAAAATTTAAAAAAATCTC
646 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCTC
*
13295253 -GAACTGC
710 TGAACTGT
* * * *
13295260 AAAAAGTTTGGAAAATCATGAAAATTGGAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
13295324 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA-AAATATGAAG
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-AAGAAATATGAAG
* * *
13295388 ATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGTGCATCCCGTCCCTCTGGCCAGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TGTGCATCCCGTCTCTCTGGCCGGC
* * * * * * *
13295453 GTAGTGCCCGCCAGCCCGTCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTTATTC
194 GTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
** * * *
13295518 CCAGTCTAAGATCATACTGGACCGAGGGTTGCGACAGCACATGCTA-CGCTCGGGCTTGTGCTGG
259 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGC-CTCGGGCATGTGCTGG
* * * * * *
13295582 TGCCGTATTTTTCTTTATCGGGG---CA----C----CATCGTCGGAGAACCTGACTGGCAACAT
323 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACAT
*
13295636 TGGGGTTCCGGCGATCGGGGGGGCGGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
388 TGGGGTTCCGACGATC-GGGGGGCGGGGGGGGTGTG-ACACATGATGTGCGATGGGTGCTGGTAC
* * * * *
13295701 TTGTCCCATATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
451 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCA
* *
13295766 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
516 TTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
* *
13295831 AATGGTCACAAAATCTTGTACACTTCGAG-TTGTAGCTGATTTTTTTTGTGCATTCCAACAAAAA
581 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAA
**
13295895 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAATGTTTTAAAAAATCTC-
646 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCT
13295959 GAACTGT
711 GAACTGT
* * *
13295966 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTC-T-TTGCGATGAAACTTCACGTGAAGG
1 AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
13296029 CTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCA-GAAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGA
* * **
13296093 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGATGCTTCTCGTCTCTCTGGCCGGTA
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTG-TGCATCCCGTCTCTCTGGCCGGCG
* * *
13296158 TAGTGCCTGCCCGCCCGCCCGTCCACTCATTTCGTCAGATGGCTTAGGCATACGGAGTTCATTCC
195 TAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
* * *
13296223 CAGTCTAAGATCGGACCGGCCCGAGGGATGCGGCAGTACATGCTAGCCTCGGGCATGTGCTGGTG
260 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGCCTCGGGCATGTGCTGGTG
** * * *
13296288 CCGCATTTTTCTTTGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAACGACATTG
325 CCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACATTG
* * * * *
13296353 GGTTTCCGACGATCGGGGGGGCCGGTGGGTGTGTG-CTCATGATGTGCAATGGGTGCTGGTACTT
390 GGGTTCCGACGATC-GGGGGG-CGGGGGGGGTGTGACACATGATGTGCGATGGGTGCTGGTACTT
*
13296417 GGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAAAGCATT
453 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATT
* * *
13296482 TGAGATTTTACAGGTTTACAGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTGTTCAAT
518 TGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* * * *
13296547 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCAAGCCAACAAAAATA
583 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATA
*
13296612 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATTT-GAAAAAATTTTAAAAAATC-CTG
648 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTCGAAAAAATTTTAAAAAATCTCTG
*
13296675 AACCGT
712 AACTGT
* *
13296681 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
13296746 CTTAAGGAACCGTTGTATGAATTTACAAGACATAAAAATAGCATTGGCATGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGA
* * * * *
13296811 TGTGCCGAAACCCACCTACCACCCTCTCGATCCACGG-TTTGCACATCCGGTCTCTCTGGCCGAC
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGTG--CATCCCGTCTCTCTGGCCGGC
* * * *
13296875 GTAGT----GCCCGCCCGCCCG----TTCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTC
194 GTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
13296932 ACAGTCTAACATCAGACAGGACTGAGGGTT
259 CCAGTCTAAGATCGGACCGGACCGAGGGTT
13296962 CTAGTAGTAG
Statistics
Matches: 2108, Mismatches: 255, Indels: 124
0.85 0.10 0.05
Matches are distributed among these distances:
703 4 0.00
704 232 0.11
705 242 0.11
706 136 0.06
707 15 0.01
708 1 0.00
710 60 0.03
711 204 0.10
712 258 0.12
713 26 0.01
714 309 0.15
715 274 0.13
716 17 0.01
717 72 0.03
718 69 0.03
719 1 0.00
720 1 0.00
721 1 0.00
722 1 0.00
728 7 0.00
730 1 0.00
731 47 0.02
732 128 0.06
733 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGTGCATCCCGTCTCTCTGGCCGGCGT
AGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGCCTCGGGCATGTGCTGGTGC
CGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACATTGG
GGTTCCGACGATCGGGGGGCGGGGGGGGTGTGACACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGA
GATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCTGAACT
GT
Found at i:13297110 original size:26 final size:27
Alignment explanation
Indices: 13297074--13297125 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 27
13297064 GTTGACTTAG
13297074 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
13297100 GCATACGGAGTTCATTTCCCAGTCTA
1 GCATACGGAGTTCATTTCCCAGTCTA
13297126 CGATCAGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAGTCTAA
Found at i:13298938 original size:720 final size:708
Alignment explanation
Indices: 13297100--13299271 Score: 2952
Period size: 706 Copynumber: 3.0 Consensus size: 708
13297090 CCCAGTCTAA
* * * ** *
13297100 GCATACGGAGTTCATTTCCCAGTCTACGATCAGACCAGGCTGAGGGTTGCAGCAGCACATGATGG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACC-GGCCGAGGGTTGTGGCAGCACATG-TAG
* * * **
13297165 GCTTGGGCATGTGCTGCTGTCGCATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCGTCGGAG
63 GCTCGAGCATGTGCTGGTG-CGCATTTTTCTTCA-CCGGGCACCATCG-CGGAGCATCGTCGGAG
* * *
13297230 AACCTGACCGACGGCATTGGGGTTCTGGCGATCGGAGGGGCCGGGGGGGGTGTGCACACAAGATG
125 AACCTGACCGACGGCATTGGGGTTC-CGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATG
** *
13297295 TGCGATGGGTGCTGGTACTTGAACTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
13297360 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCT-TCCAGTGGCCATTAAAGTGTCTGA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGT-CAGTGGCCATTAAAGTGTCTGA
*
13297424 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTT
318 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
13297489 TTGTGCATGCCAACAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGTCAAAAATTCTTCCGAA
383 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
*
13297554 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
447 AAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
13297619 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
511 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATG
* * *
13297684 GCATTGGCATGCAAAAATAAGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
576 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * ** * * *
13297749 GTGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTTACT
641 GCGCATCCCATCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCAGATGACT
13297814 TAG
706 TAG
* * * * *
13297817 GCATATGGAGTTCATTCCTAGTCTAAGATCGTACTGGACCGAGGGTTGTGGCAGCACATGTTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG-CCGAGGGTTGTGGCAGCACATGTAG-G
* *
13297882 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGG-------GC--ACCATCGTCGGAGAAC
64 CTCGAGCATGTGCTGGTG-CGCATTTTTCTTCACCGGGCACCATCGCGGAGCATCGTCGGAGAAC
*
13297938 CTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGGGTGTGCACACATGATGTG
128 CTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGGCCGG-GGGGGGTGTGCACACATGATGTG
*
13298003 CGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** * * *
13298068 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGCGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGTCAGTGGCCATTAAAGTGTCTGAAAT
*
13298133 GGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTGT
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-T
* *
13298197 GTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGCCAAAACTCCTTCCAAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * ** *
13298262 AGTTTTAAAAAATCTCGAACTGCAAAAAATTTTGAAAATTATGAAAAATAGAAAATGAGTCGTCT
450 A-TTTTAAAAAATC-CGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
13298327 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCGTAAAAATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGC
*
13298392 ATTGGCA-GGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC-TG
578 ATTGGCATGCAA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * *
13298455 ACGTATCCCATCTCTTTGGCCGACATAGTGCCCATCCGCCCGCCCGTCCGCTCATTTCGTCGGAT
642 -CGCATCCCATCTCTCTGGCCGACATAGTG--C--CCGCCCGCCCGCCCGCTCATTTCGTCAGAT
*
13298520 GGCTTAG
702 GACTTAG
* *
13298527 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGCCCGAGGGTTGTGGCAGCACATGCTAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG-CCGAGGGTTGTGGCAGCACATG-TAGG
* **
13298592 CTCGAGCATGTGCTGGTGCGGCATTTTTGTTTGCCGTGGCACCATCGCCGGAGCATCGTCGGAGA
64 CTCGAGCATGTGCTGGTGC-GCATTTTTCTTCACCG-GGCACCATCG-CGGAGCATCGTCGGAGA
* * * * *
13298657 ACTTGACCAACGACATTGGGTTTCCAGCGATCGGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
126 ACCTGACCGACGGCATTGGGGTTCC-GCGATC-GGGGGGGCCGGGGGGGGTGTGCACACATGATG
* *
13298721 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
13298786 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGTCAGTGGCCATTAAAGTGTCTAAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGTCAGTGGCCATTAAAGTGTCTGAA
* *
13298851 ATGGGGACACTTTCTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* **
13298916 TGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTTGAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAA
**
13298981 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCGTC
448 AAATTTTAAAAAATCC-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
13299045 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGACATAAAAATAG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGG
* *
13299110 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTTG
577 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * ** * * * ** * * *
13299175 CACATTCGGTCTCTCTGGCCAACGTAGTGCTCGCTCGCCCGCCAGCCCATTCGTTTCGTCGGTTG
642 CGCATCCCATCTCTCTGGCCGACATAGTG--C-C-CGCCCGCCCGCCCGCTCATTTCGTCAGATG
*
13299240 GCTTAG
703 ACTTAG
* *
13299246 GCATACGGGGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13299272 CATTAGATCA
Statistics
Matches: 1283, Mismatches: 137, Indels: 68
0.86 0.09 0.05
Matches are distributed among these distances:
704 1 0.00
705 70 0.05
706 441 0.34
707 1 0.00
708 2 0.00
709 1 0.00
710 115 0.09
711 4 0.00
715 7 0.01
716 64 0.05
717 13 0.01
718 2 0.00
719 213 0.17
720 285 0.22
721 54 0.04
722 10 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (708 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGCCGAGGGTTGTGGCAGCACATGTAGGCT
CGAGCATGTGCTGGTGCGCATTTTTCTTCACCGGGCACCATCGCGGAGCATCGTCGGAGAACCTG
ACCGACGGCATTGGGGTTCCGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGTCAGTGGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTA
AAAAATCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCAT
GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCA
TCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCAGATGACTTAG
Found at i:13302023 original size:26 final size:26
Alignment explanation
Indices: 13301994--13302047 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
13301984 TGGGTTGACT
* * *
13301994 TAGGCATACGGAGTTTATTCCCAGTC
1 TAGGCATACGAAGTTCATTCCCAATC
13302020 TAGGCATACGAAGTTCATTCCCAATC
1 TAGGCATACGAAGTTCATTCCCAATC
13302046 TA
1 TA
13302048 AGATCGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATTCCCAATC
Found at i:13302922 original size:26 final size:26
Alignment explanation
Indices: 13302893--13302943 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13302883 GTTGACTTAG
*
13302893 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
13302919 GCATACGTAGTTCATTCCCAATCTA
1 GCATACGAAGTTCATTCCCAATCTA
13302944 GGATCGAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Done.