Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 70 of 131
Found at i:13303834 original size:26 final size:26
Alignment explanation
Indices: 13303791--13303846 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13303781 TTGGTTGACT
* *
13303791 TAAGCATACGGAGTTCATTC-CTAGTC
1 TAAGCATACAGAGCTCATTCTC-AGTC
13303817 TAAGCATACAGAGCTCATTCTCAGTC
1 TAAGCATACAGAGCTCATTCTCAGTC
13303843 TAAG
1 TAAG
13303847 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGCTCATTCTCAGTC
Found at i:13304541 original size:903 final size:898
Alignment explanation
Indices: 13301663--13307962 Score: 8096
Period size: 898 Copynumber: 7.0 Consensus size: 898
13301653 AGAGAACGGG
*
13301663 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCACACAGAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* ** *
13301728 TGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGAACATCCTGTCTCTCTGGCCGACGTA
66 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
*
13301793 GTGCCCGCCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
131 GTGCTCGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * *
13301858 ATCTAACATCAGACTGGATTAAGGGTTGTGGTAGTAGGATCGGAAGCACGTAGAGGGGGACCCGA
192 GTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGG
* * * * * * * *
13301923 CCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGTCCACACGCTCGTTTTGTGGG
257 TCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
13301988 TTGACTTAGGCATACGGAGTTTATTCCCAGTCTAGGCATACGAAGTTCATTCCCAATCTAAGATC
322 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
13302053 GGACCAGACCAAGGGTTACGGTAGCACATGCTTGGCTCGGGCATGTTCTGGTGTCACATTTTTCT
387 GGACCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
13302118 TTGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGACATTGGGGTTCTGGCGA
452 TCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * * * *
13302183 TCGGGGGGGCCGGGGGGGTGTGCACACAAGATGTGCGATGGTTGCTGGTACTTGGACCTTATATT
517 TCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
13302248 GTCCACTTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
581 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
13302313 AGTTTGCTGCTAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
646 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
13302378 CTTGTACACTTCGAGTTTTTAGCAGAATTTTTTTGTGCATGCCAAAAAAAATACCAGGATCATGT
711 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * **
13302443 CTACCAAGTTTGGGGTGAGAACTCCTTTTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
776 CTACCAAGTTTGGGGCCA-AAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
*
13302508 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCT
840 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
**
13302567 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * *
13302632 TGCCTAAACCCGCGTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTA
66 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* *
13302697 --G-T-GCCCGCCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
131 GTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * *
13302758 AAGATCAGACCAGA-TCGAGGGTTGCAGTAGCAGGATCGGTAGCACGTAGAGGGGGACCTGGTCG
196 AAGATCAGACTGGACT-GAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGTCG
* * * * * * *
13302822 ATCGTCGACTTGCGCATCTCGCCCCTCTGGCCGACTAAGCACCCGTACGCTCGTTTCGTGGGTTG
260 ATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * *
13302887 ACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAATCTAGGATCGAA
325 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * * *
13302952 TC-GAGTCGAGGGTGGTGGCAGCACATGCTGGGTTCGAGCCTGTGCTGGTGCCGCATTTTTCTTC
390 CCAGA-CCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * *
13303016 -ACCGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACTGACGACACT-GGGTTCCGACGATC
454 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* * * *
13303079 GGGGGGGCCAAGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGG
519 AGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
13303144 CCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGG
583 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
13303209 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCT
648 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
13303274 TGTACACTTCGAGTTTTTAGCTGAATTTTTTCGTACATGCCAAC-CAAATACAAGGATCACGTCT
713 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * * * *
13303338 AAAAATTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAACGGTAAAAAGTTT-
778 ACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
*
13303402 AAAAATTCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
842 AAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * **
13303460 TAAGGGACCATTGTATGAATTTCCAAGACATAAAAATGGCATTGGCACTTAGAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * *
13303525 TGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGCA
66 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * *
13303590 GTGGCTGCCCACCCGCCCGCTCGCTCGTTTCGACGGTTGGCTTAGGCATATGGAGTTCATTCCCA
131 GT-GCT---CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
13303655 GTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGTAAGATCGACACCAC-TCAGAGGGGGACCCG
192 GTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGT-AGAGGGGGACCCG
* * * * *
13303719 GTCGATCCACGGCTTCCGCATCCCGCCTCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTTG
256 GTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * *
13303784 GTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGCTCATTCTCAGTCTAAGAT
321 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *** * ** *
13303849 CAGACTAGACCAAGGGTTGTTATAGCACAAGCTGGGCTCATGCATGTGCTGGTGCCACATTTTTC
386 CGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** * * *
13303914 TTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACG
451 TTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
** * * *
13303979 ATCAGGGGGGTTGGGGGGTGTGCGCACAAGATGTGCAATGCGTGCTGGTACTTGGCCCTTATATT
516 ATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * ** *
13304044 GGCCCCCTATCCCTCATCAAACCTAGAAAACTCATGCTCCCTTAAAGAGCATTTGAGATTTTACA
581 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * * *
13304109 GGTTTGCTACCAGTAGCCATTCAAGTGTTTGAAATAGGGACAATTTTTTCAAATGGTCACAAAAT
646 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * *
13304174 CTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAATTACAGGGATCATGT
711 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
13304239 CTACCAAGTTTGGGACCAAAATCCGTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTT
776 CTACCAAGTTTGGGGCCAAAATCC-TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
* *
13304304 TCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
840 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
**
13304363 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * ** * *
13304428 TGCCAAAACCCACCTACCACCCTATCAATCTGCGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTA
66 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * *
13304493 GTGCTCGCCCGTCCGTCTGCCCGCTCGTTTCGTCTGTTGGCGTAGGCATACGGTGTTCATTCCCA
131 GTGCTCGCCCG-CC--C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * ** *
13304558 GTCTAAGATTGGA-TCGGA-TCGATGGTTGCTGCAGTAGGATCGGCAGCACAAAGAGGTGGACCC
192 GTCTAAGATCAGACT-GGACT-GAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCC
* * * * * **
13304621 GGTCGATCCCCGGCTTGTGCATCCCACCCTTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTAATG
255 GGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* ** *
13304686 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTTCCAGTCTAAGA
320 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** *
13304751 TTGGACCGGACCAAGGGTTGCGACAGCACATGCTGGTCTCGGGCATGTGCTGGTGCCGCATTTTT
385 TCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * *
13304816 CTTCGTCGGGGCACCA-CGTCGGAGCATCACCGGAGAATCTGACCGACGGCATTAGGGTTCCGAC
450 CTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * *
13304880 GATCA-GGGGGTCAGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATAT
515 GATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * ** *
13304944 TGGCCCCCTATCCCTTATCAAACCTCTAGAACTCACA-CCGCTTAAAGAATATTTGAGATTTTAT
580 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
13305008 AGATTTGCT-TCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAA
645 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
13305072 TCTTGTACACTTTGAGTTTTTAGTTG-ATTTTTTTG-GACAAGTC-ACTAAAAATAAAAGGATCA
710 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG-CATGCCAAC-AAAAATACAAGGATCA
* * * * * * *
13305134 CGTTTACCAAATTTGGGGCCAAAACTTCTTGCAAAAAAATTCTAAAAAATCTCGAACTGCAAAAA
773 CGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
** * **
13305199 GTTTTGAAAATCGTGACAAATAGAAAACGAGTCGTCTTGTGATGAAACTTCACGTGAAGGCT
837 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
13305261 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* *
13305326 TGCCTAAACGCACCTACCCCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
66 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * * ** *
13305391 GTGCCCACCCGCCCGTCCGCTAGTTTCGTCAATTGGCTTAGGCATACGGAGTTCATTCCCAATCT
131 GTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * *
13305456 AAGATTGGACTGGACCGAGGGTTGCGGCAGTAGGATCGGGAGCACATAGAGGGTGACCCGGCCGA
196 AAGATCAGACTGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGA
* ** * *
13305521 TCCTTGGCTTGCGCATCGTGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGA
261 TCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
13305586 TTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCTGAC
326 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
13305651 CAGACCAAGGGTTGCGATAGCACATGCTAGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTCAT
391 CAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
13305716 CGGGGCACCATCGTCGGAGCATCACCGGAGAATCTGACCGGCGACATTGGCGTTCCGACGATCAG
456 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAG
* *
13305781 GTGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCT
521 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
13305846 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
586 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
13305911 GCTTCTAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
651 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
13305976 ACACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
716 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
13306041 AAGTTTGGGGCCGAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGGACCGTAAAAAGTTTCAAA
781 AAGTTTGGGGCC-AAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
* * *
13306106 AACCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACATGAAGGCT
845 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
13306160 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACACAGAAATATGAAGATT
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * * *
13306225 TACCTAAACCGACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTA
66 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * *
13306290 --G-T-GCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCTTTCCCAGTCT
131 GTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * ** * * * **
13306351 AAGATTGGA-TCGAACCGAGGGTTGTGATAGCAGGATCGACAGCACGTAGAGGGAGACCCGGTTA
196 AAGATCAGACT-GGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGTCG
* * * *
13306415 ATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCGTAGCTTG
260 ATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
13306480 ACTTAGGCATACGAAGTTCATTCCCAGACTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGA
325 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
13306545 CCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTCCCGTATTTTTCTTCG
390 CCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* *
13306610 TTGGGGCACCA---TC---G--T---C-G-G-A--T-------GGCATTGGGGTTTCGACGATC-
455 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCA
* * * * * * * *
13306651 GGGGGATCGGGGGGGTGTGGGTATAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTAGC
520 GGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
13306716 CTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
584 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
13306781 TTGCTGCCAGTAGCCATTAAAGTGTTTGAATTGAGGACACTTTTTTCAAATAGTCACAAAATCTT
649 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * ** *
13306846 ATACACTTTGAGTTTTGAGCTGAGGTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTA
714 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
13306911 CCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
779 CCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
*
13306976 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCT
843 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * * * *
13307032 TAAAGGACCGTTGTATAAATTTAAAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * *
13307097 TGCCTAAACTCACCTACCACCCTATCGATCCACGACTTAG-GCATCCCGTCTCTCTGGCCGACAT
66 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-GCGCATCCCGTCTCTCTGGCCGACGT
* * *
13307161 AGTGCCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
130 AGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* ** ** * ** * *
13307226 TAAAATC-GAACCAGACCAAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCC
195 TAAGATCAG-ACTGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGTC
* *
13307290 GATCCT-GACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
259 GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
13307354 GACTTAGGCACA-TGAGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
324 GACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * ** * *
13307418 GATCGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTT
388 GACCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * **
13307483 CGTCGGGGCGCCATCGTTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGCTGTTCCGACGAT
453 CGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
*
13307548 C-GGAGGGGCTGGGGGGTGTGCGCACATGAT-TCGCGATGGGTGCTGGTACTTGGCCCTTATATT
518 CAGG-GGGGCCGGGGGGTGTGCGCACATGATGT-GCGATGGGTGCTGGTACTTGGCCCTTATATT
*
13307611 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACA
581 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
13307676 GGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
646 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
** *
13307741 CTTGTACACTTCGA-TATTTTAGCAAAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACG
711 CTTGTACACTTCGAGT-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
13307805 TCTATCAAGTTTGGGGCCAACACTCCTTCCGAAAAAATTTAAAAAAAT-TTGAAACCACAAAAAG
775 TCTACCAAGTTTGGGGCCAA-AATCCTTCCGAAAAAATTTTAAAAAATCTCG-AACCGCAAAAAG
** * * *
13307869 TTTTGAAAATCGTGAAAAATTGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
838 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
13307930 TAA-GGACCA-TGTATG--GTTACACGCCATAAAAAT
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
13307963 TGGTATTGAG
Statistics
Matches: 4690, Mismatches: 627, Indels: 168
0.86 0.11 0.03
Matches are distributed among these distances:
871 7 0.00
872 470 0.10
873 1 0.00
874 2 0.00
875 178 0.04
876 104 0.02
878 1 0.00
879 1 0.00
881 2 0.00
882 1 0.00
883 2 0.00
884 1 0.00
886 1 0.00
887 2 0.00
888 1 0.00
889 2 0.00
891 1 0.00
892 9 0.00
893 235 0.05
894 523 0.11
895 379 0.08
896 351 0.07
897 47 0.01
898 687 0.15
899 337 0.07
900 44 0.01
901 344 0.07
902 305 0.07
903 525 0.11
904 127 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
GTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACTGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGA
TCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
Found at i:13304733 original size:26 final size:26
Alignment explanation
Indices: 13304697--13304749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13304687 GTTGACTTAG
*
13304697 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
13304723 GCATACAAAGTTCATTTCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
13304749 G
1 G
13304750 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:13305620 original size:26 final size:26
Alignment explanation
Indices: 13305591--13305643 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13305581 GTTGATTTAG
13305591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13305617 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13305643 G
1 G
13305644 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13306516 original size:26 final size:26
Alignment explanation
Indices: 13306486--13306537 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13306476 CTTGACTTAG
13306486 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
* *
13306512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
13306538 AATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:13308583 original size:26 final size:26
Alignment explanation
Indices: 13308553--13308605 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13308543 CTTGACTTAG
13308553 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* * *
13308579 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
13308605 G
1 G
13308606 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:13310935 original size:26 final size:26
Alignment explanation
Indices: 13310899--13310951 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13310889 GTTGACTTAG
* *
13310899 GCATACGGAGTTTATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13310925 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13310951 G
1 G
13310952 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13311829 original size:26 final size:26
Alignment explanation
Indices: 13311800--13311852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13311790 CCTGACTTAG
*
13311800 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
13311826 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13311852 G
1 G
13311853 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13312068 original size:901 final size:894
Alignment explanation
Indices: 13310151--13314296 Score: 5103
Period size: 901 Copynumber: 4.6 Consensus size: 894
13310141 ACCATCACTT
* * * * *
13310151 GGAGCATCA-CGGAGAACCT-ACTGAACGGCA-TGGGGTTCTGACGATC-AGGGGGCAGAGGTGG
1 GGAGCATCACCGGAGAACCTGACCG-ACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGG
* * *
13310212 GTGCATGCGTGA-ATGATGTGCGTTGGGTG-T-GTACTTGGCCCTTATATTGGCCCCCTATCCCT
64 GTG--TGCG-CACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
13310274 CAT-AAA-ATCGAGTA-TCACA-CCCCTTTAAGAGCATTTGAGA-TTTACAGGTTTGCTG-CAGC
126 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
13310333 AGCCATTAAAGTGTCTGAAATGAGGATACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGA
191 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
13310398 GTTTTTAGATGAATTTTTTTTTGCATGCCAAGAAAAATACAAGGATCACGTCTACTAAGTTTGGG
256 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGG
* *
13310463 GCCAAAACTCCTTCC-AAAATAATTTTAAAAAATCCCGAACCAC-AAAAAGTTTCAAAAATGGTG
321 GCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATTGTG
* * * * * *
13310526 AAAAATAAAAAACGTGTCGTCTTGCCATGAAACCTCACGTCAAGGTTTAAAGGACCATTGTATGA
385 AAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCA--T--A-GCTTAAGGGACCATTGTATGA
* * * *
13310591 ATTTACAAGCCATCAAAATGGCATTGGCACT-CAAAAATAGGAAGATGTGCCTAAACCCACCTAC
445 ATTTACAAGCCATAAAAATGGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
13310655 CGCCCTATCGATCCACGGCTTGCGCATCCAGTCTCTTTGGCCGGCGTAGTGCCCGCCCG--C-CC
509 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCC
* * * *
13310717 -GCTCATTTCGTCGGTTGGCTTAAGCAAACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACTG
574 TGCTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCG
* * * * ** *
13310781 AGGGTTGTGGCACCAGGATCGGCAGCATGCAGAGGGGGACCCGACTAATCCTCGGCTTACGCATC
639 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATC
* * * *
13310846 CTGCCCCTCTGGTCGGCTGAGCGCACGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
704 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
13310911 TATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTGC-
769 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCA
** * * * * *
13310974 GACAGCACATGCTGTACTAGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTC
833 G-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--TC
* * * * *
13311039 GGAGCATCACCGGAGAGCTTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGTCGAGGGGGT
1 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* * * *
13311104 GTGCGCACATGATGTGCGATGGGTGCGGGTACATGGCCCTTATCTTGGCCCCCTATCCCTCATCA
66 GTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
13311169 AACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTACTACCAGTAGCCA
131 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
13311234 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGTTTT
196 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
13311299 TAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-TCAAGTTTGGGGCC
261 TAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACT-AAGTTTGGGGCC
* * * * ** *
13311363 AAAACTCCTTCCGAAAAAATTTTAAAAAAATCTCGAACGGTAAAAAATTTTC-AAAATCATGAGA
324 AAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATTGTGAAA
* *
13311427 AATAGAAAACGAGTCGTCTTGCCATAAAACTTCAT-GCTTAAAGGACGATTGTATGAATTTACAA
388 AATAGAAAACGAGTCGTCTTGCCATAAAACTTCATAGCTTAAGGGACCATTGTATGAATTTACAA
* *
13311491 GCCATAAAAAAGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
453 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
13311556 AATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGTCCACCCGCCTGCTC
518 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCG----CCCGCCTGCTC
* *
13311621 GTTTCATCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
579 GTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGT
* * * *
13311686 TGCGGCAGCAGGATCGGCAGCACGTAGAGAGGGACCCGGCCGATCCCCGACTTACGCATCCTGCC
644 TGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCC
* * **
13311751 CCTTTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGCCCTGACTTAGGCATACGGAGTTCATT
709 CCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGG-GTTGACTTAGGCATACGGAGTTCATT
* * * *
13311816 CCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGTAGC
773 CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGC
* * * **
13311881 ACATGCTGGGCTTGGGCATGTCCTGGTGCCGCATTTTTCTTCACCGGGGCACCATAGTC
838 ACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--TC
* * *
13311940 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGAAGATCGGTGGGGCCGGGGGGGT
1 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* *
13312005 GTGCACACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
66 GTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
13312070 AACCTTGAGAAGTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCA
131 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
** * * * * *
13312135 CAAAAGTGTTTGAAATGCGAACACTTTTTTCAAATAGTCACAAAATCTTGTACAGTTCGAGTTTT
196 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* ** *
13312200 TAGCTGAAGTTTTTTGTGCATGTGAACAAAAATACAAGGATGACGTCTACTAAGTTTGGGGCCAA
261 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAA
* *
13312265 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTGTCAAAAATTGTGAAAAAT
326 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATTGTGAAAAAT
* * * *
13312329 AGAAAACAAGTCGTCTTGCCA-AGAAACTTCACGTGAAGGCTTAAGGGGCCACTGTATGAACTTA
391 AGAAAACGAGTCGTCTTGCCATA-AAACTTCA--T--A-GCTTAAGGGACCATTGTATGAATTTA
* *
13312393 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCT
450 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
13312458 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCC-GATGTAATGCCTGCCCGCCCGCCCGCTC
515 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCCGCCTGCTC
* * *
13312522 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGT
579 GTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGT
* * * * **
13312587 TGCGACAACAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCC
644 TGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCC
* * * **
13312652 CCTCTGGCCGGCTGAGTGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATAATGAGTTCATTC
709 CCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
** * ** * ** * *
13312717 CCAGTCTAAGCATAAAGAGTTAATTTGCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGCC
774 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* *
13312782 CATGCTGGGCTCGAGTATGTGCTAGTGCCGCATTTTTC-T--TC---G---C---C
839 CATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTC
** * * *
13312826 GGAGCATCGTCGGAGAACTTGACCGACGTCATTGGGGTTACGACGATCGGGGGGGCCGGGGAGGG
1 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGG
* * * *
13312891 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCTTATCCCTAATC
65 TGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
13312956 AAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTTATAGGTTTGCTGCCAGTAGCC
130 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
13313021 ATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
195 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
13313086 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACGAAGTTTGAGGCCA
260 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCA
* * * * **
13313151 AAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCAC-AAAAATTTTTGAAAATTGTGAAAAA
325 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATTGTGAAAAA
* * *
13313215 TAGAAAACGAGTTGTGTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTA
390 TAGAAAACGAGTCGTCTTGCCATAAAACTTCA--T---AGCTTAAGGGACCATTGTATGAATTTA
* * *
13313280 CAAGCCATAAAAATGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCT
450 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
13313345 ATCGATCCACGGTTTACGCATCCCGTATCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCCCGCCCG
515 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTA--G--TGCCCGCCCGCCCG--C-
* * * * * * *
13313410 CTCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGACTTCATTTCGAGTCTAAGA-TAGGACCGGA
573 CT-GCTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTA-GACCAGA
* * * * * ** * *
13313474 CTGAGGGTTACGGTAGCAAGATCGGCAGCACACAGA-AGGGGACCC-AGTTGATCCTCGGCTTGC
636 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGA-GGGACCCGA-CCGATCCCCGGCTTAC
** *
13313537 GCATCCCGCCCCTCTGGCCGACTGAGCATCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
699 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * *
13313602 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTACCAGTCTAAGATCGGATCAGACCGAGGGT
764 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * *
13313667 TGCAGCAGCACATGCTGGGCTCAAGCATTTGCTGGTGCCAG-ATTTTTCTTCGTCGAGGCACCAT
829 TGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCAT
13313731 T-
893 TC
* * * * * *
13313732 ---G--T---CGGATAACCTGGCCGACGACATTGGGGTTCCGACGAAC-GGGGCGTCGGGGGGGT
1 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* *
13313788 GTGCGCACAAGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
66 GTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* ** **
13313853 AACCTTGAGAACTCTGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAACAGCCA
131 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
13313918 TTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
196 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
13313983 TAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCAAA
261 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAA
* * * * *
13314048 AACACCTTCCGAAAAATTTTTAAAAAATCCCAAACCGC-AAAAAGATTCAAAAATTATGAAAAAT
326 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATTGTGAAAAAT
*
13314112 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
391 AGAAAACGAGTCGTCTTGCCATAAAACTT--CAT--A-GCTTAAGGGACCATTGTATGAATTTAC
* * *
13314177 AAGCCATAAAAATGGCATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
451 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
13314242 TCGATCGACGGCTTGCGTATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCTCGCCC
516 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCC
13314297 AGGCTCGGGC
Statistics
Matches: 2825, Mismatches: 360, Indels: 142
0.85 0.11 0.04
Matches are distributed among these distances:
886 55 0.02
887 441 0.16
888 32 0.01
889 14 0.00
890 56 0.02
891 24 0.01
892 145 0.05
893 6 0.00
894 24 0.01
895 268 0.09
896 520 0.18
897 80 0.03
898 102 0.04
899 66 0.02
900 332 0.12
901 528 0.19
902 2 0.00
903 1 0.00
904 3 0.00
905 126 0.04
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (894 bp):
GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
GTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATTGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATAAAACTTCATAGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGT
CGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCA
GCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGG
CCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTG
GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTC
Found at i:13312736 original size:26 final size:26
Alignment explanation
Indices: 13312700--13312752 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13312690 GTTGACTTAG
* *
13312700 GCATAATGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTAATTCCCAGTCTAA
**
13312726 GCATAAAGAGTTAATTTGCAGTCTAA
1 GCATAAAGAGTTAATTCCCAGTCTAA
13312752 G
1 G
13312753 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTAATTCCCAGTCTAA
Found at i:13313108 original size:887 final size:889
Alignment explanation
Indices: 13310160--13314296 Score: 5243
Period size: 896 Copynumber: 4.6 Consensus size: 889
13310150 TGGAGCATCA
* * * * *
13310160 CGGAGAACCT-ACTGAACGGCA-TGGGGTTCTGACGATC-AGGGGGCAGAGGTGGGTGCATGCGT
1 CGGAGAACCTGACCG-ACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTG--TGCG-
* * *
13310222 GA-ATGATGTGCGTTGGGTG-T-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-AAA-AT
61 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
13310282 CGAGTA-TCACA-CCCCTTTAAGAGCATTTGAGA-TTTACAGGTTTGCTG-CAGCAGCCATTAAA
126 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
13310343 GTGTCTGAAATGAGGATACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGAT
191 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
13310408 GAATTTTTTTTTGCATGCCAAGAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTC
256 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTC
* * *
13310473 CTTCC-AAAATAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATGGTGAAAAATAAAAA
321 CTTCCGAAAA-AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAA
* * * * *
13310537 ACGTGTCGTCTTGCCATGAAACCTCACGTCAAGGTTTAAAGGACCATTGTATGAATTTACAAGCC
385 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
13310602 ATCAAAATGGCATTGGCAC-TCAAAAATAGGAAGATGTGCCTAAACCCACCTACCGCCCTATCGA
450 ATAAAAATGGCATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
13310666 TCCACGGCTTGCGCATCCAGTCTCTTTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCATTTCG
514 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCG
* * * *
13310727 TCGGTTGGCTTAAGCAAACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGTGGC
579 TCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGC
* * ** * *
13310792 ACCAGGATCGGCAGCATGCAGAGGGGGACCCGACTAATCCTCGGCTTACGCATCCTGCCCCTCTG
644 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTG
* * * * *
13310857 GTCGGCTGAGCGCACGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCATTC
709 GCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
13310922 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTGC-GACAGCACATG
774 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAG-CAGCACATG
** * * * * * *
13310985 CTGTACTAGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGT
837 CTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCACGGCACCATCGT
* * *
13311038 CGGAGCATCACCGGAGAGCTTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGTCGAGGGGG
1 CGGAG-A--A-C------C-TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
* * *
13311103 TGTGCGCACATGATGTGCGATGGGTGCGGGTACATGGCCCTTATCTTGGCCCCCTATCCCTCATC
55 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
13311168 AAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTACTACCAGTAGCC
120 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
13311233 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGTTT
185 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
13311298 TTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-TCAAGTTTGGGGC
250 TTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACT-AAGTTTGGGGC
* * * * ** *
13311362 CAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTCGAACGGTAAAAAATTTTC-AAAATCATGAG
313 CAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCG-CAAAAAGTTTCAAAAATTGTGAA
* * *
13311426 AAATAGAAAACGAGTCGTCTTGCCATAAAACTTCA--T----GCTTAAAGGACGATTGTATGAAT
376 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
13311485 TTACAAGCCATAAAAAAGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
441 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
13311550 CCTATCAATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGA-GTAGTGCCCGCCCGTCCACCCG
506 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCTGCCCG----CCCG
* * *
13311614 CCTGCTCGTTTCATCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
566 CCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAC
* * * *
13311679 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGAGGGACCCGGCCGATCCCCGACTTACGCA
631 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCA
* * * **
13311744 TCCTGCCCCTTTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGCCCTGACTTAGGCATACGGA
696 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGG-GTTGACTTAGGCATACGGA
* *
13311809 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTA
760 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * * **
13311874 CGGTAGCACATGCTGGGCTTGGGCATGTCCTGGTGCCGCATTTTTCTTCACCGGGGCACCATAGT
825 CAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCACGGCACC--A-T
13311939 CGGAGCAT
887 C---G--T
* * * *
13311947 CACCGGAGAACCTGACCGACGGCATTGGGGTTTCGAAGATCGGTGGGGCCGGGGGGGTGTGCACA
1 ---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCA
* * *
13312012 CAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
63 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * **
13312077 AGAAGTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCACAAAAGT
128 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * * *
13312142 GTTTGAAATGCGAACACTTTTTTCAAATAGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGA
193 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** *
13312207 AGTTTTTTGTGCATGTGAACAAAAATACAAGGATGACGTCTACTAAGTTTGGGGCCAAAACTCCT
258 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCT
* * *
13312272 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTGTCAAAAATTGTGAAAAATAGAAAACA
323 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACG
* * * *
13312337 AGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGGCCACTGTATGAACTTACAAGCCATA
388 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
13312402 AAAATGGCATTGGCACGTAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCA
453 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
13312467 CGGCTTGCGCATCTCGTCTCTCTGGCCGATGTAATGCCTGCCCGCCCGCCCGCTCGTTTCGTCGG
518 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * *
13312532 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAACA
583 TTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCA
* **
13312597 GGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
648 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCG
* * * **
13312662 GCTGAGTGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATAATGAGTTCATTCCCAGTCTAAG
713 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * ** * ** * *
13312727 CATAAAGAGTTAATTTGCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGCCCATGCTGGGC
778 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGC
* * *
13312792 TCGAGTATGTGCTAGTGCCGCATTTTTCTTCG-C-CGG-AGCATCGT
843 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCACGGCACCATCGT
* * *
13312836 CGGAGAACTTGACCGACGTCATTGGGGTTACGACGATCGGGGGGGCCGGGGAGGGTGTGCGCACA
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACA
* * * *
13312901 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCTTATCCCTAATCAAACCTCCAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
13312966 AACTCACACCCCCTTAAAGAGCATTTGTGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
13313031 CTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
13313096 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACGAAGTTTGAGGCCAAAACTCCTTT
260 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTC
* * * **
13313161 CAAAAAAATTTTAAAAAATCCCGAACCACAAAAATTTTTGAAAATTGTGAAAAATAGAAAACGAG
325 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAG
* * *
13313226 TTGTGTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
390 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
13313291 AATGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACG
455 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
13313356 GTTTACGCATCCCGTATCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGCTTGTTT
520 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCT----GCCCGCCCGCCCGCT--C--GTTT
* * * * * * * *
13313421 CGTCAGTTGGCTTAGGCATACGGACTTCATTTCGAGTCTAAGA-TAGGACCGGACTGAGGGTTAC
577 CGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTA-GACCAGACCGAGGGTTGC
* * * * ** * *
13313485 GGTAGCAAGATCGGCAGCACACAGAAGGGGACCC-AGTTGATCCTCGGCTTGCGCATCCCGCCCC
641 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTACGCATCCCGCCCC
** *
13313549 TCTGGCCGACTGAGCATCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
705 TCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
13313614 AGTCTAAGCATATGGAGTTCATTACCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACA
770 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACA
* * * *
13313679 TGCTGGGCTCAAGCATTTGCTGGTGCCAG-ATTTTTCTTCGTCGA-GGCACCATTGT
835 TGCTGGGCTCGAGCATGTGCTGGTGCC-GCATTTTTCTTCG-CCACGGCACCATCGT
* * * * * * *
13313734 CGGATAACCTGGCCGACGACATTGGGGTTCCGACGAAC-GGGGCGTCGGGGGGGTGTGCGCACAA
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
* * *
13313798 GATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
** **
13313863 ACTCTGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTAAAGTGTC
131 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
13313928 TGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATT
196 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
13313993 TTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCAAAAACACCTTCC
261 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCC
* * * *
13314058 GAAAAATTTTTAAAAAATCCCAAACCGCAAAAAGATTCAAAAATTATGAAAAATAGAAAACGAGT
326 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
*
13314123 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
391 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
13314188 ATGGCATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGG
456 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
13314253 CTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCC
521 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCC
13314297 AGGCTCGGGC
Statistics
Matches: 2819, Mismatches: 363, Indels: 140
0.85 0.11 0.04
Matches are distributed among these distances:
878 5 0.00
879 1 0.00
881 1 0.00
882 1 0.00
886 46 0.02
887 451 0.16
888 21 0.01
889 8 0.00
890 56 0.02
891 25 0.01
892 127 0.05
893 8 0.00
894 24 0.01
895 268 0.10
896 537 0.19
897 83 0.03
898 104 0.04
899 64 0.02
900 341 0.12
901 504 0.18
902 3 0.00
903 1 0.00
904 4 0.00
905 126 0.04
907 1 0.00
908 1 0.00
909 2 0.00
911 1 0.00
912 5 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (889 bp):
CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGA
TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACT
GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCG
AGCATGTGCTGGTGCCGCATTTTTCTTCGCCACGGCACCATCGT
Found at i:13313631 original size:26 final size:26
Alignment explanation
Indices: 13313595--13313647 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13313585 GTTGACTTAG
*
13313595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
13313621 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
13313647 G
1 G
13313648 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:13315143 original size:26 final size:26
Alignment explanation
Indices: 13315120--13315192 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
13315110 TTAGGCATAC
13315120 GGAGTTCATTCCCAGTCTAAGCATGT
1 GGAGTTCATTCCCAGTCTAAGCATGT
13315146 GGAGTTCATTCCCAGTCTAAGCATGT
1 GGAGTTCATTCCCAGTCTAAGCATGT
13315172 GGAGTTCATTCCCAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
13315193 ATAGGACCGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAAGCATGT
Found at i:13316006 original size:26 final size:26
Alignment explanation
Indices: 13315969--13316021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13315959 GTTGACTTAG
13315969 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13315995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13316021 G
1 G
13316022 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13316891 original size:26 final size:26
Alignment explanation
Indices: 13316862--13316939 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
13316852 GTTTACTTAG
*
13316862 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13316888 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13316914 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13316940 AATCGGACCA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13317825 original size:26 final size:25
Alignment explanation
Indices: 13317787--13317838 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
13317777 GTTGACTTAG
13317787 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
13317812 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
13317838 G
1 G
13317839 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:13319531 original size:26 final size:26
Alignment explanation
Indices: 13319501--13319553 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13319491 GTTGACTTAG
13319501 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13319527 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13319553 G
1 G
13319554 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13326651 original size:26 final size:26
Alignment explanation
Indices: 13326613--13326663 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13326603 GGTTAACTTC
* *
13326613 GGCATACGGAGTTCATTCTCAGTCTG
1 GGCATACGAAGTTCATTCCCAGTCTG
13326639 GGCATACGAAGTTCATTCCCAGTCT
1 GGCATACGAAGTTCATTCCCAGTCT
13326664 AAGATCAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (26 bp):
GGCATACGAAGTTCATTCCCAGTCTG
Found at i:13327531 original size:26 final size:26
Alignment explanation
Indices: 13327495--13327547 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13327485 GTTGATTTAG
* * *
13327495 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
13327521 GCATACGGAGTTCATTCCAAATCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
13327547 G
1 G
13327548 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAATCTAA
Found at i:13328348 original size:890 final size:887
Alignment explanation
Indices: 13318159--13322995 Score: 4661
Period size: 894 Copynumber: 5.4 Consensus size: 887
13318149 TCAAATAGTC
*
13318159 ACAAAAATACAAGGATCACGTC-ATCCAAGTTGGGGGCCAAAACT-CCTTCCGAAAAAATTTTAA
1 ACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAA
* * * *
13318222 AAAATCCCGAACCGTAAAGAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
64 AAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
13318287 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
129 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
13318352 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCG
194 --AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* * * * *
13318417 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCTACCCGCTCATTTCGTCAGTTGGTTTAGGCATACG
257 TCTCTCTGGTCGGCGTAGT----GCCCG-C--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
** * * * * *
13318482 GAGTTCATTCCCAGTCTAAGATTAGACCAG-TCTGAGGGTTGCGGTAACAGGATCGACAGCACGC
315 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGC
* * * * * **
13318546 AGAGGGGGACCCGACCGATACCTGGCTTGCACATCCCGCCCCTTTGGCCGGCTGAACGCCCATAC
380 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
13318611 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
445 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ** * ** *
13318676 TCCATTCTAAGATTAGACCAGACCGAGGGTTGGGCAGCAGATGCTGGGCTCGGGCATGTGCTGGT
510 CCCAGTCTAAGATCGGACCGGACCGAGGGTTCCGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
13318741 GCCACA---TT-TT--T----G----A--GCG--TC-GC-CGGAGAACCTGACC-AGCGACATTG
575 GCCGCATTTTTCTTCGTCGGGGCACCATCGCGAAGCATCACGAAGAACCTGACCGA-CGGCATTG
* * *
13318785 GGGAAT-CGACGATCGGGGGGCC-AGGGGGTGTAG-GCACATGATGTGTGATGGGTGCTGGTACT
639 GGG-TTCCGACGATCGGGGGGCCGGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACT
* *
13318847 TGGCCCTTATATTGGCCCCCTATCCCTCATCTACCCTCGAGAACTCACACCCCCTTAAAGAGCAT
702 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* ** *
13318912 TTGATATTTTGTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACTGGGGACACTTTTTTCAA
767 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
13318977 ATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTATGCATGCTA
832 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* * ** *
13319034 ATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTTAAAACT-CCTTCCGAAAAAATTTTACA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAAA
* * * ** *
13319098 AAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
65 AAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
13319163 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACG
130 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-
* * * *
13319228 TAGAAATATGAAGATGTACCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCAT
194 -AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * * *
13319293 CTTTCTGGCCGGCGTAGTGCCCG-CCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCGT
258 CTCTCTGGTCGGCGTAGTGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * * * * * * *
13319357 TCCTTGTCTAAGATTGGATCAGACC-AAGGGTTGCGACAGCAGGATCAACAGCACGTAGAGGGGG
323 TCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGG
* * * * * * * *
13319421 ACTC-AGCCGATCCCCGGCTTACGCATCCTGCCTCTCTGGCCGGTTGAGAGCCCGCACCCTCGTT
388 ACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* * * *
13319485 TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTC
452 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * ** *
13319550 TAAGATCAGACCGAACCGTGGGTTACGACAGCACATGCTGGAATCGGGCATGTG-TCGGTGCCAC
517 TAAGATCGGACCGGACCGAGGGTTCCG-CAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGC
* * * *
13319614 ATTTTTCTACGTCGGGGCACCAT-----TG--T--CGGAGAACCTGACC-AGCAGCATTGGGGTT
580 ATTTTTCTTCGTCGGGGCACCATCGCGAAGCATCACGAAGAACCTGACCGA-CGGCATTGGGGTT
* * *
13319669 TCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCC
644 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
13319734 TTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
708 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
13319799 TTTTACAGGTCTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
773 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
13319864 ACAAAATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTTATGCATGCCA
838 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* ** *
13319915 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCTAAACT-CCTTCCCAAAAAGTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* * * * ** ** *
13319979 GATCCCAAACCGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCCTCTTGCCATGAAA
66 AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
13320044 CTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACATGCCATAAAAATGGCATTGGAATGC
131 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--C
* * *
13320109 AGAAATATGAAGATGTACCTAAACCCACCTACCACCATATCGATCCAC-AGCTTGCACATCCCGT
194 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGT
* * * *
13320173 CTCTCTGGCCGACGTAGTGCCCGCTTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTT
258 CTCTCTGGTCGGCGTAGTGCCCGC---CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * ** *
13320238 CATTCCCAGTCTAAGATCAGATC-GAAAC-GAGGGTT-TCGGCAGCAGGATTGGCAGCACACTGA
320 CATTCCCAGTCTAAGATCGGACCAG-ACCTGAGGGTTGT-GGCAGCAGGATCGACAGCATGCAGA
* * * * * *
13320300 GGGGGACCCGATCGATGCACGGCTTGCGCATCTCGCCCCTTTGGCCGGCTGAGCGCCCGCACTCT
383 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
** * * *
13320365 CATTTCGTGTCTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCT
448 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** *
13320430 AGTCTAAGATCGGACCGGACCAAGGGTTGTAGCAGCTCATGCTGGGCTCGGGCATGTGCTGGTGC
513 AGTCTAAGATCGGACCGGACCGAGGGTT-CCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * *
13320495 CGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGATGGCATTGG
577 CGCATTTTTCTTCGTCGGGGCACCATCGC-GAAGCATCA-CGAAGAACCTGACCGACGGCATTGG
* * * *
13320560 GGTTCCGACGATCGAGGGGGCC-AGGGGGTGCGCACACATGATGTGCGATGGGTGCTTGTACTTG
640 GGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
13320624 GCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTT
704 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
13320689 GAGATTTTACAGGTTTACTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAAT
769 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
13320754 GGTCACCAAATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTTGTGCATGCCA
834 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* * * * *
13320809 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCAAAAAC-ACCTTCCAAAAAAGTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* * * * *
13320873 AATC-CTGAACCGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATTAA
66 AATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
13320937 ACTTCACGTGAAGGTTTAAGGGGCCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGTCATT
130 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--
* * * * * *
13321002 CAAAAATATGAAGATGTGCCTAAACCCACCTACCTCCCTATCGATACATGGCTCGCGCATCCCGT
193 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * * * *
13321067 CTCTCTGGCCGACGTAGCGCCCGCCTGCCCGTCTGCCCGTTCATTTCGTCAGTTCGCTTAGGGAT
258 CTCTCTGGTCGGCGTAGTGCCCG-C--CCCG-CT---CG----TTTCGTCGGTTGGCTTAGGCAT
* * * ** * *
13321132 ACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACC-GAGGGTTGCAGTAGCAAGATCTG-CAGC
312 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATC-GACAGC
*** * * * * *
13321195 ACATAGAAGGGGAACCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
376 ATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
13321260 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAG-AT-C-G-G--
441 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** *
13321319 -A-T--CAGACT--GA---G---GG-TTG-CGG-T----AGCACATGCTGGGCTCGGGCATGTGC
506 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCCGCAGCACATGCTGGGCTCGGGCATGTGC
* ** * * *
13321365 TGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCCG-AGCATCGTCGGAGAACCTGACTGACG
571 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG--CGAAGCATC-ACGAAGAACCTGACCGACG
** * * * *
13321429 ATATTAGGCTTTCGACGATCGGGAGGGCC-GGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTG
633 GCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
**
13321493 GTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
697 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
13321558 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
762 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
13321623 TTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCA
827 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCA
* * *
13321685 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAA-TTCCTTCCAAACAAATTTTAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAA-AAATTTTAAA
* * * * * * *
13321749 AAATCCCAAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATTAA
65 AAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * ** *
13321814 CCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGTTATAAAAATGGCATTCGCATG
130 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--
* * * * *
13321879 CAAAAATATGAAGATGTACCAAAACCCACCTACCA-CCTATCGATCCATGACTTGTGCATCCCGT
193 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * *
13321943 CTCTCTGGCCAGCGTAGTGACCAC-CCGCTCGCCCGTCCGCTTGTTCATCGGTTGGCTTAGGCAT
258 CTCTCTGGTCGGCGTAGTG-CC-CGCC-C-CG--C-T-CG--T-TTCGTCGGTTGGCTTAGGCAT
* * * * * * *
13322007 ACGGAGTTCATTCGCAGTCTAACATCCGACCGGATC-GAGGGTTGTGGCACCAGGATCGATAGCA
312 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCA
* * *** * * * **
13322071 CGGAGAGTCAGACCCGATCGATCCCCGACTTGCGCAT-CCGCCCCTCTGGCCGGCTGAACGTTCG
377 TGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
13322135 CACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
442 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * ** * * * *
13322200 ATTCCCATTTTATGATCATACCGGACCGAGGGTTACGGCAGCATATGTTGGGCTCGGTCATGTGC
507 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-CCGCAGCACATGCTGGGCTCGGGCATGTGC
** * *
13322265 TGGTGCCGCATTTTTCTTCACCGGGGCACCAT--C---G---C-CGGAGAACCTAACCGACGGCA
571 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGAAGCATCACGAAGAACCTGACCGACGGCA
* * * * ***
13322321 TTAGGGTTCTGGTAGCAGGATCGGATCGGACCGGATCAGAGAACCTGACTGGCAGCATTGGGATT
636 TTGGGGTTC-CG-A-C--GATCGG--GGGGCCGG----G-G-GGGTG--T-GC-GC------A--
* ** * **
13322386 CCGATGATCGGGGGGCCGGGGGGTGTGCGCAAATGATGTACAATGGGTGCTGGTACT-TGGCCCT
676 -C-ATGAT----GTG-C-GATGG-GT--GC---TG--GTAC--TTGGCCCT--TA-TAT------
* * *
13322450 TATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGGGAT
714 -----TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
13322515 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCA
774 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
13322580 CAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCA
839 CAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCA
* * *
13322630 ACAAAAATACAAGGATCATGTCTTCCAAGTTTGGGG-CAAAACTCCTTTCGAAAAAATTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* **
13322694 AATC-CTGAACCGCAAAAAGGTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
66 AATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
** * *
13322758 A-TATCTGGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGAATTGGCAC
130 ACT-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--C
*
13322822 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-
192 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* * * *
13322886 TCTCTCTGGTTGACGTAGTGCCCGCACGCCAGTCCGCCCCCTCGTTTCCTCAGTTGGCTTAGGCA
257 TCTCTCTGGTCGGCGTAGTG--C-C-CGCC---CCG----CTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
13322951 TACGGAGTTCATTGCTAGTCTAAGATCAGACCGGA-CAGAGGGTTG
311 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTG
13322996 GGGTAGCACA
Statistics
Matches: 3357, Mismatches: 426, Indels: 288
0.82 0.10 0.07
Matches are distributed among these distances:
866 1 0.00
867 216 0.06
868 33 0.01
871 7 0.00
872 1 0.00
874 78 0.02
875 354 0.11
876 409 0.12
877 158 0.05
878 7 0.00
879 32 0.01
880 217 0.06
881 253 0.08
882 5 0.00
883 1 0.00
884 265 0.08
885 3 0.00
886 2 0.00
887 1 0.00
889 24 0.01
890 4 0.00
891 2 0.00
892 8 0.00
893 2 0.00
894 475 0.14
895 48 0.01
896 3 0.00
898 2 0.00
899 1 0.00
900 56 0.02
901 3 0.00
902 171 0.05
903 2 0.00
904 1 0.00
905 2 0.00
906 2 0.00
912 1 0.00
915 1 0.00
916 4 0.00
920 2 0.00
921 1 0.00
922 3 0.00
923 2 0.00
925 2 0.00
928 2 0.00
930 4 0.00
932 3 0.00
934 3 0.00
935 1 0.00
943 2 0.00
944 168 0.05
945 292 0.09
946 6 0.00
947 2 0.00
948 4 0.00
949 2 0.00
950 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (887 bp):
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
TCTGGTCGGCGTAGTGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCGGACCGAGGGTTCCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCGCGAAGCATCACGAAGAACCTGACCGACGGCATTGGGGTTCCGACGA
TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
Found at i:13328421 original size:26 final size:26
Alignment explanation
Indices: 13328385--13328437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13328375 GTTGACTTAG
13328385 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
13328411 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13328437 G
1 G
13328438 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13328546 original size:890 final size:888
Alignment explanation
Indices: 13318159--13329183 Score: 11509
Period size: 890 Copynumber: 12.4 Consensus size: 888
13318149 TCAAATAGTC
*
13318159 ACAAAAATACAAGGATCACGTC-ATCCAAGTTGGGGGCCAAAACT-CCTTCCGAAAAAATTTTAA
1 ACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAA
* * * *
13318222 AAAATCCCGAACCGTAAAGAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
64 AAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
13318287 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
129 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
13318352 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCG
194 --AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* * * * *
13318417 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCTACCCGCTCATTTCGTCAGTTGGTTTAGGCATACG
257 TCTCTCTGGTCGGCGTAGT----GCCCG-C--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
** * * * * *
13318482 GAGTTCATTCCCAGTCTAAGATTAGACCAG-TCTGAGGGTTGCGGTAACAGGATCGACAGCACGC
315 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGC
* * * * * **
13318546 AGAGGGGGACCCGACCGATACCTGGCTTGCACATCCCGCCCCTTTGGCCGGCTGAACGCCCATAC
380 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
13318611 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
445 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ** * ** *
13318676 TCCATTCTAAGATTAGACCAGACCGAGGGTTGGGCAGCAGATGCTGGGCTCGGGCATGTGCTGGT
510 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
13318741 GCCACA---TT-TT--T----G----AGCGTC--GC--CG---GAGAACCTGACCAGCGACATTG
575 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGTCAGAGAACCTGACCGGCGGCATTG
* * *
13318785 GGGAAT-CGACGATCGGGGGGCC-AGGGGGTGTAG-GCACATGATGTGTGATGGGTGCTGGTACT
640 GGG-TTCCGACGATCGGGGGGCCGGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACT
* *
13318847 TGGCCCTTATATTGGCCCCCTATCCCTCATCTACCCTCGAGAACTCACACCCCCTTAAAGAGCAT
703 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* ** *
13318912 TTGATATTTTGTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACTGGGGACACTTTTTTCAA
768 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
13318977 ATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTATGCATGCTA
833 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* * ** *
13319034 ATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTTAAAACT-CCTTCCGAAAAAATTTTACA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAAA
* * * ** *
13319098 AAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
65 AAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
13319163 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACG
130 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-
* * * *
13319228 TAGAAATATGAAGATGTACCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCAT
194 -AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * * *
13319293 CTTTCTGGCCGGCGTAGTGCCCG-CCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCGT
258 CTCTCTGGTCGGCGTAGTGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * * * * * * *
13319357 TCCTTGTCTAAGATTGGATCAGACC-AAGGGTTGCGACAGCAGGATCAACAGCACGTAGAGGGGG
323 TCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGG
* * * * * * * *
13319421 ACTC-AGCCGATCCCCGGCTTACGCATCCTGCCTCTCTGGCCGGTTGAGAGCCCGCACCCTCGTT
388 ACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* * * *
13319485 TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTC
452 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * ** *
13319550 TAAGATCAGACCGAACCGTGGGTTACGACAGCACATGCTGGAATCGGGCATGTG-TCGGTGCCAC
517 TAAGATCGGACCGGACCGAGGGTTACG-CAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGC
* * *
13319614 ATTTTTCTACGTCGGGGCACCAT--T---G--TCG---GAGAACCTGACCAGCAGCATTGGGGTT
580 ATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTT
* * *
13319669 TCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCC
645 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
13319734 TTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
709 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
13319799 TTTTACAGGTCTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
774 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
13319864 ACAAAATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTTATGCATGCCA
839 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* ** *
13319915 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCTAAACT-CCTTCCCAAAAAGTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* * * * ** ** *
13319979 GATCCCAAACCGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCCTCTTGCCATGAAA
66 AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
13320044 CTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACATGCCATAAAAATGGCATTGGAATGC
131 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--C
* * *
13320109 AGAAATATGAAGATGTACCTAAACCCACCTACCACCATATCGATCCAC-AGCTTGCACATCCCGT
194 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGT
* * * *
13320173 CTCTCTGGCCGACGTAGTGCCCGCTTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTT
258 CTCTCTGGTCGGCGTAGTGCCCGC---CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * ** *
13320238 CATTCCCAGTCTAAGATCAGATC-GAAAC-GAGGGTT-TCGGCAGCAGGATTGGCAGCACACTGA
320 CATTCCCAGTCTAAGATCGGACCAG-ACCTGAGGGTTGT-GGCAGCAGGATCGACAGCATGCAGA
* * * * * *
13320300 GGGGGACCCGATCGATGCACGGCTTGCGCATCTCGCCCCTTTGGCCGGCTGAGCGCCCGCACTCT
383 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
** * * *
13320365 CATTTCGTGTCTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCT
448 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
13320430 AGTCTAAGATCGGACCGGACCAAGGGTTGTA-GCAGCTCATGCTGGGCTCGGGCATGTGCTGGTG
513 AGTCTAAGATCGGACCGGACCGAGGG-T-TACGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * ** * **
13320494 CCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGATGGCATTG
576 CCGCATTTTTCTTCGTCGGGGCACCATCG-TCGAGCATCGTCAGAGAACCTGACCGGCGGCATTG
* * * *
13320559 GGGTTCCGACGATCGAGGGGGCC-AGGGGGTGCGCACACATGATGTGCGATGGGTGCTTGTACTT
640 GGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
13320623 GGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATT
704 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
13320688 TGAGATTTTACAGGTTTACTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAA
769 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
13320753 TGGTCACCAAATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTTGTGCATGCCA
834 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* * * * *
13320809 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCAAAAAC-ACCTTCCAAAAAAGTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* * * * *
13320873 AATC-CTGAACCGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATTAA
66 AATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
13320937 ACTTCACGTGAAGGTTTAAGGGGCCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGTCATT
130 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--
* * * * * *
13321002 CAAAAATATGAAGATGTGCCTAAACCCACCTACCTCCCTATCGATACATGGCTCGCGCATCCCGT
193 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * * * *
13321067 CTCTCTGGCCGACGTAGCGCCCGCCTGCCCGTCTGCCCGTTCATTTCGTCAGTTCGCTTAGGGAT
258 CTCTCTGGTCGGCGTAGTGCCCG-C--CCCG-CT---CG----TTTCGTCGGTTGGCTTAGGCAT
* * * ** * *
13321132 ACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACC-GAGGGTTGCAGTAGCAAGATCTG-CAGC
312 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATC-GACAGC
*** * * * * *
13321195 ACATAGAAGGGGAACCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
376 ATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
13321260 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAG-AT-C-G-G--
441 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** *
13321319 -A-T--CAGACT--GA---G---GG-TTG-CGG-T----AGCACATGCTGGGCTCGGGCATGTGC
506 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGCAGCACATGCTGGGCTCGGGCATGTGC
* ** * * * * *
13321365 TGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCCGAGCATCGTCGGAGAACCTGACTGACGA
571 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGAGCATCGTCAGAGAACCTGACCGGCGG
* * * * *
13321430 TATTAGGCTTTCGACGATCGGGAGGGCC-GGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGG
635 CATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
**
13321494 TACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
699 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
13321559 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
764 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
13321624 TCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCA
829 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCA
* * *
13321685 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAA-TTCCTTCCAAACAAATTTTAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAA-AAATTTTAAA
* * * * * * *
13321749 AAATCCCAAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATTAA
65 AAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * ** *
13321814 CCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGTTATAAAAATGGCATTCGCATG
130 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--
* * * * *
13321879 CAAAAATATGAAGATGTACCAAAACCCACCTACCA-CCTATCGATCCATGACTTGTGCATCCCGT
193 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * *
13321943 CTCTCTGGCCAGCGTAGTGACCAC-CCGCTCGCCCGTCCGCTTGTTCATCGGTTGGCTTAGGCAT
258 CTCTCTGGTCGGCGTAGTG-CC-CGCC-C-CG--C-T-CG--T-TTCGTCGGTTGGCTTAGGCAT
* * * * * * *
13322007 ACGGAGTTCATTCGCAGTCTAACATCCGACCGGATC-GAGGGTTGTGGCACCAGGATCGATAGCA
312 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCA
* * *** * * * **
13322071 CGGAGAGTCAGACCCGATCGATCCCCGACTTGCGCAT-CCGCCCCTCTGGCCGGCTGAACGTTCG
377 TGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
13322135 CACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
442 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * ** * * *
13322200 ATTCCCATTTTATGATCATACCGGACCGAGGGTTACGGCAGCATATGTTGGGCTCGGTCATGTGC
507 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC-GCAGCACATGCTGGGCTCGGGCATGTGC
** * *
13322265 TGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC--GC--CG---GAGAACCTAACCGACGGC
571 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGTCAGAGAACCTGACCGGCGGC
* * * * ***
13322320 ATTAGGGTTCTGGTAGCAGGATCGGATCGGACCGGATCAGAGAACCTGACTGGCAGCATTGGGAT
636 ATTGGGGTTC-CG-A-C--GATCGG--GGGGCCGG----G-G-GGGTG--T-GC-GC------A-
* ** * **
13322385 TCCGATGATCGGGGGGCCGGGGGGTGTGCGCAAATGATGTACAATGGGTGCTGGTACT-TGGCCC
677 --C-ATGAT----GTG-C-GATGG-GT--GC---TG--GTAC--TTGGCCCT--TA-TAT-----
* * *
13322449 TTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGGGA
715 ------TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
13322514 TTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTC
774 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
13322579 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCA
839 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCA
* * *
13322630 ACAAAAATACAAGGATCATGTCTTCCAAGTTTGGGG-CAAAACTCCTTTCGAAAAAATTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* **
13322694 AATC-CTGAACCGCAAAAAGGTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
66 AATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
** * *
13322758 A-TATCTGGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGAATTGGCAC
130 ACT-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--C
*
13322822 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-
192 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* * * *
13322886 TCTCTCTGGTTGACGTAGTGCCCGCACGCCAGTCCGCCCCCTCGTTTCCTCAGTTGGCTTAGGCA
257 TCTCTCTGGTCGGCGTAGTG--C-C-CGCC---CCG----CTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * * * *
13322951 TACGGAGTTCATTGCTAGTCTAAGATCAGACCGGA-CAGAGGGTTGGGGTAGCA-CAT-GCCGGG
311 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGAC-AG
* ** ** **** * * ** **** *
13323013 C-TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGTCACG-ATCACCGAAGAATCAT--CA
375 CAT---GCA-GAGGGGGACCCG-ACCGATC--C-CCGGCTTGCGCATC-CCG-CCCCTC-TGGCC
* * * * * * *** * *
13323074 GAG--AACCTGACCG-ACG-GCA-TT--AGGGTTCCGACGATCGAGGGGGCCGGGCGGTGTTC-G
429 G-GCTGAGC-GCCCGCACGCTCATTTCGTGGGTT--GAC--T-TA---GG-CATACGGAGTTCAT
* * * * ** ** * **
13323131 T-ACATGATGT--GC-T--GGTGCTACATT---TTTCTTTG-TC-GA--GTCACC-A-ACTT-CG
483 TCCCA-G-TCTAAGCATACGGAG-TTCATTCCCAGTCTAAGATCGGACCG-GACCGAGGGTTACG
* ** * ** ** *
13323180 GAG-A-AT-CT-AAC-CGACGGCAT-TAG--GGTTCCG-A--TAGC-AGGAT--TGG-A-C--CG
544 CAGCACATGCTGGGCTCG--GGCATGT-GCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCG
* * * * *
13323227 --GA-C--CGGATCAGAGAACCTGACTGGCAGCATTAGGATTCCGACGATCGGGGGGTC-GGGGG
605 TCGAGCATC-G-TCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
* * * *
13323286 GTATGCGCAAATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCAT
668 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
13323351 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
733 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
13323416 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCAAGTT
798 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
13323481 TTTAGCTGAATTTTTTCATGCATGCGA
863 TTTAGCTGAATTTTTT-GTGCATGCCA
* * *
13323508 AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC-AAACTCCTTTCGAAAAAATTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* *** * *
13323572 AATCTCGAACCGTAAAAAGTTGCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAA
66 AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
13323637 ATTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
131 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--C
* * *
13323702 AAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC-AGCTTGTGCATCCCGT
194 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGT
*
13323766 CTCTCTGGTCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
258 CTCTCTGGTCGGCGTAGTGCCCG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
13323831 CATTCCCAGTCTAAGATTGGACCAGA-CTGAGGGTTGTAGCAGCAAGATCGACAGCATACTGAGG
320 CATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGG
* * * * *
13323895 TGGACCCGACCG-TGCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCTCCCGCACGCTC
385 GGGACCCGACCGAT-CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* ** * *
13323959 GTTTCGTGGGTTGACTTAGAAATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
449 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
13324024 GTCTAGGATTGAACTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT
514 GTCTAAGATCGGACCGGACCGAGGGTTAC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * ** * *
13324089 GCAGTTTTCTTCGTCGGGGCACCATCGTTAGAGCATCACCAGAAAACCTGACCGACGGCATTGGG
578 GCATTTTTCTTCGTCGGGGCACCATCG-TCGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGG
* * *
13324154 GCTCTGACGATCGGGGGGCCCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
642 GTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
13324219 CCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGATCTCACACCCCCTTAAAGAGCATTTG
706 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
13324284 AGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATG
771 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
13324349 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTT-TGCATGCCA
836 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
* * *
13324400 ACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* * *
13324465 AATCCCGAACC-CTAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCTAGGAA
66 AATCTCGAACCGC-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
13324528 ACTTCACGTGAAGGCTTAGGGGGCCGTTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACG
130 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-
* * * *
13324593 TAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCATGCGCATCCTGT
194 -AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* **
13324658 CTCTCTGATCGGCGTAGTGCCCGCCCGTCTGCTCGTTTCGTCCATTGGCTTAGGCATACGGAGTT
258 CTCTCTGGTCGGCGTAGTGCCCGCCC--C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
13324723 CATTCCCAGTCTAAGATTGGACCAGACC-AAGGGTTGTGGTAGCAGGATCGGCAGCACGTAGAGG
320 CATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGG
* * * * * * * * *
13324787 GGGACCTGACCAACCCCCGGCTTGCCCATCCTGCCCCACTGGCCGGCTGAGTGCCCGCACACTCG
385 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* *
13324852 TTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
450 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* *
13324917 TCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTACCG
515 TCTAAGATCGGACCGGACCGAGGGTTACG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
13324982 TATTTTTCTTCGTCGGGG---CA----C---CATCGTCAGAGAACCTAACCGGTGACATTGGGGT
579 CATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGT
* ** *
13325037 TCCGACGATCGGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTTTTCGCCC
644 TCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
13325101 TTA-ATTTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAG
709 TTATA-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
13325165 ATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTGTGAAATGGGGGACACTTTTTTCTAATGG
773 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGG
*
13325230 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTCCATGCCA
837 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
* * **
13325282 AC-AAAATACAAGGATCACGTCTACCGAGTTTAGGGCCAAAACTCTTTTCG-AAAAATTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* * * * * *
13325345 AATCTCAAATCGCAAAAAGTTTGGAAAGTCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAA
66 AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
13325410 CTTCACGTGAAGGATTAAGGGACCGA-TATATGAATTTACAAGCCATAAAAATGGCATTGGCACG
131 CTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-
*
13325474 TAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCA-GAGCTTGCGCATCCCG
194 -AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCG
* * * * * *
13325538 TTTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGTA
257 TCTCTCTGGTCGGCGTA--G--T----GCCCG-CC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * *
13325603 TACAGAGTTCATTCCAAGTCTAAGATCAAACCAGACC-GAGGGTTGCGGCAGCAGGATCGATAGC
311 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGC
* * * * * *
13325667 ACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGATGAGTGCCT
376 ATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
13325732 GCACGCTCATTTCGTGAGTTGAC-T-----TA--G-G--------CA---T-A-CA-A---AGTT
441 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
13325771 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTG
506 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACG-CAGCACATGCTGGGCTCGGGCATGTG
* * * *
13325836 CTAGTGCCGTATTTTTCTTCGTCGGGGCACCA---TC--GC-T-G--A-AGAACC-GACCGACGA
570 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGTCAGAGAACCTGACCGGCGG
* *
13325890 CATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGGTGTGCGCACGTGATGTGCGATTGGTGCT
635 CATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
13325955 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAA
697 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
13326020 GAGCATCTGAGATTTTAGAGGTTTGCTACCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTT
762 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
13326084 TTTCACATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATGTTTTTGTGCATGCCA
827 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCA
* * *
13326147 ACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAAAT-CCTTCCAAAAAAATTTTAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAAA
* *
13326211 AAATCTCGAAACGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
65 AAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
13326276 ACTTCATGTGAAGGCTTAAGGGA-CATTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
130 ACTTCACGTGAAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-
* * * *
13326340 GCAGAAATATGAAGATGTGCCTAAAACCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCTG
193 -CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* * * *
13326405 -CTTCTCTGGCCGGCGCAGTGCCCG-CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTC
257 TC-TCTCTGGTCGGCGTAGTGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * ** *
13326468 ATTCCCAATCTAAGTTTGGACCA-AACTGAGGGTTGTGGCAGCAGGATCGTTAGCATGCAGTGGG
321 ATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGG
* * * * * *
13326532 GGACCCGGCCAATCTCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGT
386 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
* * * ** *
13326597 TTCGTGGGTTAACTTCGGCATACGGAGTTCATTCTCAGTCTGGGCATACGAAGTTCATTCCCAGT
451 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
13326662 CTAAGATCAGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCTGC
516 CTAAGATCGGACCGGACCGAGGGTTAC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
13326727 ATTTTTCTTCGTTGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGGATTGGGGT
580 ATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGT
* * * *
13326792 TCCGACTAT--------CGGGGAGGTGTGTGCACATGATGTGC-ACCGGGTGCTGGTACTTGGCC
644 TCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCC
* * *
13326848 CTTATATTGGCCCTCTATCCGTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
708 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
13326913 ATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCACATGGT
773 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
13326978 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATATTTTTGTGCATGCCC
838 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCA
* * * *
13327030 ACTAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAAT-CCTTCCGAAAAAATTTTTAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAAA
* *
13327094 AAATCTCGAACCGCAAAAAG-TTTGAAAAATCGTGAAAAATAAAAAACGAGTCGCCTTGCCATGA
65 AAATCTCGAACCGCAAAAAGTTTTG-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
13327158 AACTTCACGTGAAGGCTTAAGGGACCA-TGTTATGAATTTTCAAGCCATAAAAATGGCATTGGCA
129 AACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCATAAAAATGGCATTGGCA
* ** * *
13327222 GGTAGAAATATGAAGATGTGCCTAAACCCATTTACCAACCTATCGATCCA-TAGCTTGCGCATCC
193 --CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCC
* **
13327286 CGTCTCTCTGGCCTC-TC-T-G-GCCCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACTAAG
255 CGTCTCTCTGG--TCGGCGTAGTGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * ** * * *
13327346 TTCATTCCCAGTCTAAGATGGGATC-GAGCTGAGGGTTGCAGTAGCAGGATCGACAGCGTACAGA
318 TTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGA
* * * * *
13327410 GGGTGACCCGATCGATCCCCGGCTTGCGCATCCCACGCCTCTGGCCGGCTGAACGCCCGCACGCT
383 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
13327475 CATTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCA
448 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
13327540 AATCTAAGATCGGACCGGACCAAGGGTTGCCGCAGCATATGCTGGGCTCTGGCATGTGCTGGTGC
513 AGTCTAAGATCGGACCGGACCGAGGGTT-ACGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * *
13327605 CGCATTTTTCTTCGTCGGGGCACCATCGCCGAAACATC-ACCGAAAAACCTGACCGACGGCATTG
577 CGCATTTTTCTTCGTCGGGGCACCATCGTCG-AGCATCGTCAG-AGAACCTGACCGGCGGCATTG
* * *
13327669 GGGTTTCGACGATCCGGGGGGCCGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACCT
640 GGGTTCCGACGAT-CGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
13327734 GGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTGACACCCCGTTAAAGAGCATT
704 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
13327799 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAA
769 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
13327864 TGATCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATCTTTTTGTGCATGCCA
834 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCA
* * *
13327920 ACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCCTTCAAAAAAATTTTAAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
* * * *
13327985 AATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAA
66 AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
**
13328050 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCAGCATCA
131 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CA
* *
13328115 GAAATATGAAGATGTGCCAAAACCCACCTACCA-CCTATCGATCCACGACTTCCGCATCCCGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
* * *
13328179 CTCTGGTCGGCGTAGTGCTCG-CCCGCTCATTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTC
260 CTCTGGTCGGCGTAGTGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
13328243 CCAGTCTAAGATCGAACCAGATC-AAGGGTTGTGGTAGTAGGATCGGCAGCATGCAGAGGGGGAC
325 CCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGAC
* ** * * * * * **
13328307 ACGGTCGATCCCAGGCTTACGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGAATGCTCATTTTA
390 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCG
* *
13328372 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAA
455 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13328437 GATCGGACCAGACCGAGCGTTACAGCAGCACATGCTGGGTTCGGGCATGTGCTGGTGCCGTATTT
520 GATCGGACCGGACCGAGGGTTAC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * *
13328502 TTCTTCGTCGGTGCACCACCGCCGGAGCATCGTCAGAGAACCTGACCGGCTGCATTGGGGTTCCG
584 TTCTTCGTCGGGGCACCATCGTC-GAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * *
13328567 ATGATCGGGGGGGCTGGGGGGGCTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT-GCCCTT
648 ACGATC-GGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
13328631 ATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATT
711 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
13328696 TTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
776 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
13328761 AAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
841 AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* * *
13328810 ACACAATTACAAGGATCACGTCTACCAAG-TTGGGGCCAAAA-TTCCTTCCGAAAAAATTTTAAA
1 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAAA
* ** * *
13328873 AAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
65 AAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
13328938 ACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATCGGCACG
130 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-
* * * * *
13329002 TAGAAATATGAGGATGTGCTTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCTGT
194 -AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
*
13329067 CTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCAT
258 CTCTCTGGTCGGCGTAGTG--C-CC-G--C-CCCGCTCG----TTTCGTCGGTTGGCTTAGGCAT
** *
13329132 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCT-AGGGTTGCGGCAGCA
312 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCA
13329184 CATGCTGGGC
Statistics
Matches: 8596, Mismatches: 1124, Indels: 833
0.81 0.11 0.08
Matches are distributed among these distances:
854 2 0.00
855 147 0.02
856 3 0.00
857 1 0.00
859 5 0.00
861 10 0.00
862 28 0.00
863 110 0.01
864 62 0.01
865 44 0.01
866 188 0.02
867 418 0.05
868 47 0.01
869 11 0.00
870 7 0.00
871 77 0.01
872 11 0.00
873 5 0.00
874 79 0.01
875 363 0.04
876 415 0.05
877 169 0.02
878 404 0.05
879 197 0.02
880 309 0.04
881 918 0.11
882 157 0.02
883 314 0.04
884 271 0.03
885 8 0.00
886 7 0.00
887 7 0.00
888 56 0.01
889 389 0.05
890 945 0.11
891 59 0.01
892 502 0.06
893 108 0.01
894 485 0.06
895 245 0.03
896 2 0.00
898 11 0.00
899 1 0.00
900 57 0.01
901 6 0.00
902 237 0.03
903 3 0.00
904 1 0.00
905 2 0.00
906 2 0.00
907 5 0.00
911 1 0.00
912 1 0.00
915 1 0.00
916 4 0.00
917 2 0.00
918 2 0.00
919 1 0.00
920 2 0.00
921 2 0.00
922 4 0.00
923 3 0.00
925 2 0.00
927 1 0.00
928 5 0.00
930 13 0.00
931 2 0.00
932 6 0.00
933 1 0.00
934 6 0.00
935 24 0.00
936 1 0.00
937 8 0.00
938 2 0.00
939 6 0.00
940 2 0.00
941 1 0.00
942 3 0.00
943 4 0.00
944 174 0.02
945 299 0.03
946 11 0.00
947 14 0.00
948 10 0.00
949 11 0.00
950 7 0.00
951 13 0.00
952 14 0.00
953 4 0.00
954 5 0.00
955 4 0.00
956 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
TCTGGTCGGCGTAGTGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCAGACCTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCGGACCGAGGGTTACGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCGTCGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
Found at i:13330904 original size:26 final size:26
Alignment explanation
Indices: 13330868--13330946 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
13330858 GTTGACTTAG
13330868 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13330894 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
13330920 GCATACGGAGTTCATTCTGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13330946 G
1 G
13330947 ATCGAACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13331832 original size:26 final size:26
Alignment explanation
Indices: 13331796--13331868 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
13331786 GTTGACTTAG
13331796 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13331822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13331848 GCATACGGAGTTCATTTCCAG
1 GCATACGGAGTTCATTCCCAG
13331869 CCAAGATCGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13332478 original size:931 final size:924
Alignment explanation
Indices: 13329997--13334530 Score: 4550
Period size: 923 Copynumber: 5.0 Consensus size: 924
13329987 GATAACTTAG
* * * *
13329997 GCATACGAATTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCACTAGCACATGCTGGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGCTAGCACATGCTGGG
* * * *
13330062 CTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGACACTATCATCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCC-AATTTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
* * ** *
13330126 AACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTACGCACAGGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGTGCACATGATGT
*
13330190 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13330255 CACCCGC-TTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAA
259 CACCC-CATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAA
* * *
13330319 ATGGCGACACTTTTTTCAAATGGTCACAAAATCCTGTATACTTCGAGTTTTTAGCTGAATTTCTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGATGAATTTCTT
*
13330384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAA
* *
13330449 AAATTTTAAAAAATCACAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTTGTC
453 AAATTTTAAAAAATCACAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAATGAGTCGTC
13330514 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13330579 CTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCATGGCTTG
583 CTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
13330644 CGCATCCATCTCTC-GGCCGACGTAGTGCCCGCCC-GCCCGCCCGCTCCTTTCGTCGGTTGGCTT
648 CGCATCCATCTCTCTGGCCGGCGTAGTGCCC-CCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ***
13330707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGCGTTACGGCGGTAGGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAACAGGATCGG
* * * * ** *
13330772 CAGCACGCAAATGGGGG-CCTGACTGAGCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
777 CAGCACGCAGA-GGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGTCGGCTGAG
**
13330836 CGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
13330901 GAGTTCATTCCTAGTCTAA
906 GAGTTCATTCCCAGTCTAA
* * * * * *
13330920 GCATACGGAGTTCA-TTCTGAGTCTAAGATCGAACCGGACCGAGGGTTGTGGTTGCACATGCTGG
1 GCATACGGAGTTCATTTC-CAGTCTAAGATCGAACTGGACCAAGGGTTGCGCTAGCACATGCTGG
* * * * * *
13330984 GCTCGGGCATGTTCTGGTG-CTATATTTTTCTTCGTTGAGGCACCATCACCGGAGCAACGTCGGA
65 GCTCGGGCATGTGCTGGTGCCAAT-TTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGA
* *
13331048 GAACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGTGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGTGCACATGATGT
*
13331113 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
13331178 CA-CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAA
259 CACCCCA-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAA
* * * * **
13331242 ATCGGGACACTTTTTTCAAATGGTGACAAAATCTTGTATACTTCGAGTTATTAGCA-CAAAATCT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAG-ATGAATTTCT
13331306 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAA
* *
13331371 AAAATTTTAAAAAATCACAAAGCATAAAAAGTTTGGAAAATCATGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCACAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAATGAGTCGT
* *
13331436 CTTGCCATGAAACTCCAAGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13331501 GCTTTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * *
13331566 GCACATCTCATCTCTCTAACCGGCGTAGTGCCCACCTGCTGGCCCGCCCGCTTGTTTTGTCGGTT
647 GCGCATC-CATCTCTCTGGCCGGCGTAGTGCCC-CC--CT-GCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
13331631 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGGGGGTTGCGGTAACAAG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAACAGG
* * * *
13331696 ATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCC-CCCCTCTGGTCGGC
772 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGTCGGC
*
13331760 TGAGCGCCCGCACGCTCGCTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
13331825 TACGGAGTTCATTCCCAGTCTAA
902 TACGGAGTTCATTCCCAGTCTAA
* * * *
13331848 GCATACGGAGTTCATTTCCAG-CCAAGATCGGACTGGACCAAGGGTTGCGCCAGCACATGCTCGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGCTAGCACATGCTGGG
* * ** * *
13331912 CTCGGGCATGTGCTAGTGCCAATTTGTTTCTTCATCGGGGCACCATTGTCGGAGCATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCAATTT-TTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
* * * *
13331977 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGAGAGCCGGGGCGGGTTTGTGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGG-GGGTGTGTGCACATGATG
* * * *
13332042 TACGATGAGTGCTGGTACTTGGCGCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
13332107 ACACCCCATTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAA
* *
13332172 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGATGAA-TTTCT
* * * ** * ** * *
13332237 TTTTGCATGCCAATAAAAATATAAGGATCTTGTCTACGAAGTTTGGGGCCAAAACTCCATCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAA
* * * * ** *
13332302 AAATTTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCACAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAATGAGTCGT
* * * *
13332367 CTTGCCAGGAACCTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13332432 GCATTGGCATGCAGAAATATTAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * ** * * *
13332497 GCGCATCCCGCCTCTCTGGCCCGTATAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGATTGGCT
647 GCGCAT-CCATCTCTCTGGCCGGCGTAGTGCCCCCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* *
13332562 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTATGGCAACAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAACAGGATCG
* * * * *
13332627 GTAGCACGCAGAGGGGGACCCGATCGATCCCCTGCTTACGCATCCCGCCCATTTGGTCGGCTGAG
776 GCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGTCGGCTGAG
* * *
13332692 TGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAAG-AT-CG
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** * ** *
13332755 GA--CCAGACCGAGGGTTA
906 GAGTTCATTCCCAGTCTAA
* ** * ** * * ** * ** *** * *
13332772 -C--A-GCAGCACA-TGCTGGGCTCGAGCAT-GTGCTGGTGCC--GTATTTTTCT---TCAT-CG
1 GCATACGGAGTTCATTTCCAGTCT-AAG-ATCGAACTGG-ACCAAGGGTTGCGCTAGCACATGCT
* ** * * * * * *
13332825 GGGCAC---CAT-CACCGGAG-C-A--------TCGTCGGAGAACC-TGA-CCGACGGCAT--T-
63 GGGCTCGGGCATGTGCTGGTGCCAATTTTTTCTTCGTCGGGGCACCATCATCGGA--GCATCGTC
* ** * ** **** *
13332871 GG-G---GT-TTCGGC-G-ATCGGGG----GA-G-TCGGGGTGGGTGTGCGCACATGATGTGC-G
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCG-G-GGGGGTG-TGTGCAC
* * ** ** * *** * *
13332922 ATG-GGTGCTGGTACTTGGTGCTTATA-TTGGCCC-CCTA-T---CCCTTATCAAACCTC---G-
187 ATGATGTGC--G-A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* ** * **
13332976 ---AGAAGTCACACCCCCCTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAA
248 TCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAA
* * * * * *
13333038 AGTGTCAGAAATGGGGACACATTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGC
313 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGA
* * * * * ** *
13333103 TGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGT-AAGCAAGTTCGGGGCCAAAACT
378 TGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAAT
* * ** *
13333167 CCTTCCGAAACAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
443 CCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAA
*
13333232 ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
508 ATGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * ** *
13333297 ATAAAAATGGCATTAGCATATAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGAT
573 ATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** * *
13333362 CCACGGCTTGCGCATCCCGCCTCACTGGCCGGCGTAGTGCCCGCCCGCACGCCTGCCCACCCGCT
638 CCACGGCTTGCGCAT-CCATCTCTCTGGCCGGCGTAGT----G-CC-C-C-CCTGCCCGCCCGCT
* * *
13333427 TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGG
694 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
** * * * * * ** * * *
13333492 TTGTGGCAGCAGGACCTG-ACCGAGGGTTGTGGCAGCAGGACCCGACCGATCCCC-GACTTGCAC
759 TTACGGCAACAGGATCGGCAGC-A-CGCAGAGG--G--GGACCCGACCGATCCCCAG-CTTACGC
* * *
13333555 ATCCCGCCCCTCTGGTTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
817 ATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
13333620 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
882 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13333663 G-AT--TG-G---A----C---C--AGACCGAA--GG-CC----G-CG-GC-ATCACATGCTGGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGCTAGCACATGCTGGG
* * *
13333702 CTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCATC-GAG-A--A--A-C----CATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCC-AATTTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
* * * *
13333755 AACCTAACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGTGCACATGATG
* * *
13333820 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTTAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * * * ** *
13333885 ACGCCCCCTTAATGAGGATTTGAAATTTTACAAGTTTGCTACTAGTCGCCATTAAAGTGTCTGAA
258 ACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAA
* * * *
13333950 ATGGGAACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTT-T
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGATGAAT-TTCT
* ** ** *
13334014 TTATGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTTGGGGCCAAAACTCCTTCCG-
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGTGAAAAATCCTTCCGA
** ** * * * * * * ** * *
13334078 AAATTTTTTTTAAAATCCCGAACCCTTAAAAGTCT-CAAACATTGTTTGTGAAAA-A-AAAACGA
451 AAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTGGAAA-A-T-CATG-AAAAATAGAAAATGA
* * *
13334140 GTCATACTTGGCCAGGAAACTTC-ACTGTAAGGGCTTAAGGGACCATTGTATG-A-TTACAAGCC
512 GTCGT-CTT-GCCATGAAACTTCAAGTG-AA-GGCTTAAGGGACCATTGTATGAATTTACAAG-C
* * *
13334202 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGA
572 CATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** * * * *
13334267 TGCACGGCTTGCGCATCTTGTCTCTCTGACCGGCATAGTGCCCGCCC-GCCCGCTCGCTTGTTTC
637 TCCACGGCTTGCGCATC-CATCTCTCTGGCCGGCGTAGTGCCC-CCCTGCCCGCCCGCTCGTTTC
* ** ** * * **
13334331 GTCGGTTAGCTTAGGCATACAAAAATCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG
700 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGG
* * * * *
13334396 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATTCCGCCCCTCT
765 CAACAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCT
* * * * *
13334461 GG-CCGATCGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAG
830 GGTCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
13334525 TCTAAG
894 TCTAAG
13334531 ATCGGACTGG
Statistics
Matches: 3024, Mismatches: 459, Indels: 286
0.80 0.12 0.08
Matches are distributed among these distances:
871 1 0.00
873 3 0.00
874 236 0.08
875 34 0.01
876 119 0.04
877 8 0.00
878 6 0.00
879 7 0.00
880 3 0.00
881 4 0.00
882 88 0.03
883 16 0.01
884 2 0.00
885 14 0.00
886 10 0.00
887 115 0.04
888 14 0.00
889 20 0.01
890 8 0.00
891 24 0.01
892 11 0.00
893 111 0.04
894 6 0.00
895 10 0.00
897 5 0.00
898 86 0.03
899 7 0.00
900 3 0.00
901 16 0.01
902 150 0.05
903 34 0.01
904 32 0.01
905 16 0.01
906 110 0.04
907 21 0.01
910 1 0.00
911 1 0.00
912 3 0.00
913 3 0.00
916 5 0.00
917 3 0.00
919 3 0.00
920 10 0.00
921 10 0.00
922 17 0.01
923 583 0.19
924 16 0.01
925 15 0.00
926 4 0.00
927 176 0.06
928 256 0.08
929 120 0.04
930 187 0.06
931 260 0.09
932 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (924 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGCTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCAATTTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGTGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGATGAATTTCTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCACAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
CCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCATCTCTCTGGCCGGCGTAGTGCCCCCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAACAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAA
Found at i:13333113 original size:876 final size:873
Alignment explanation
Indices: 13330920--13335265 Score: 4811
Period size: 876 Copynumber: 4.9 Consensus size: 873
13330910 CCTAGTCTAA
** * * ** **
13330920 GCATACGGAGTTCATTCTGAGTCTAAGATCGAACCGGACCGAGGGTTGTGGTTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * ** * * * * *
13330985 CTCGGGCATGTTCTGGTGCTATATTTTTCTTCGTTGAGGCACCATCACCGGAGCAACGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * *
13331050 ACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGTGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
13331115 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
13331180 CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAATC
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * ** ** *
13331245 GGGACACTTTTTTCAAATGGTGACAAAATCTTGTATACTTCGAGTTATTAGCACAAAATCTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** *
13331310 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
13331375 TTTTAAAAAATCACAAAGCATAAAAAGTTTGGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
456 TTTTAAAAAATCACAAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
13331440 CCATGAAACTCCAAGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCTT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
13331505 TAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** * * * * *
13331570 ATCTCATCTCTCTAACCGGCGTAGTGCCCACCTGCTGGCCCGCCCGCTTGTTTTGTCGGTTGGCT
651 ATCCCGTCTCTCTGGCCCGCATAGTGCCC-GC--CT-GCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * * *
13331635 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGGGGGTTGCGGTAACAAGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * *
13331700 ACAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCC-CCCCTCTGGTCGGCTGAG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAG
*
13331764 CGCCCGCACGCTCGCTTCGTGGGTTGACTTAG
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
**
13331796 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CCAG----A-CCGA-GG-GTTG
* * *
13331860 CATTTCCAGCCAAGATCGGACTGGACCAAGGGTTGCGCCAGCACATGCTCGGCTCGGGCATGTGC
49 CA---GCAG-C---A-C--A-T-G--C-TGGGCT-CG--AG--CATG-T--GCT---G---GTGC
* ** * *
13331925 TAGTGCCAATTTGTTTCTTCATCGGGGCACCATTGTCGGAGCATCGCCAGAGAACCTGACCGGCG
85 -CGT----A-TT-TTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCG
* * * * * * *
13331990 GCATTGGGGTTTCGGCGATCGGGAGAGCCGGGGCGGGTTTGTGCACATGATGTACGATGAGTGCT
143 GCATTGGGGTTCCGACGATCGGG-GGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
13332055 GGTACTTGGCGCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAA
206 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
13332120 GAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
271 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
13332185 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTTTTGCATGCCAA
336 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* * ** * * * *
13332250 TAAAAATATAAGGATCTTGTCTACGAAGTTTGGGGCCAAAACTCCATCCGAAAAATTTTTTAAAA
400 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * * * *
13332315 ATCTCGAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCGTCTTGCCAGGAACC
465 ATCACAAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
13332380 TTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
530 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
13332445 GAAATATTAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
595 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
13332510 CTCTGGCCCGTATAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAG
660 CTCTGGCCCGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** ** * *
13332575 TTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTATGGCAACAGGATCGGTAGCACGCAGAG
725 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * * *
13332640 GGGGACCCGATCGATCCCCTGCTTACGCATCCCGCCCATTTGGTCGGCTGAGTGCCCGCAAGCTC
790 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTC
13332705 GTTTCGTGGGTTGACTTAG
855 GTTTCGTGGGTTGACTTAG
* *
13332724 GCATACGGAGTTCATTCCCACTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
*
13332789 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * *
13332854 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGAGTCGGGGTGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGG-GGGTGTGCGCACATGATGT
** * *
13332919 GCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAAGTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
13332984 CACCCCCCTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCAGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13333049 TGGGGACACATTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
13333114 GTGCATACCAACAAAAATACAAGGATCACGT-AAGCAAGTTCGGGGCCAAAACTCCTTCCGAAAC
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
13333178 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCACAAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCT
13333243 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
13333308 ATTAGCATATAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
13333373 GCATCCCGCCTCACTGGCCGGCGTAGTGCCCGCCCGCACGCCTGCCCACCCGCTTGTTTCGTCGG
649 GCATCCCGTCTCTCTGGCCCGCATAGT----G--C-C-CGCCTGCCCGCCCGCTCGTTTCGTCGG
* *
13333438 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGTGGCAGCA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * * ** * * *
13333503 GGACCTG-ACCGAGGGTTGTGGCAGCAGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTC
771 GGATCGGCAGC-A-CGCAGAGG--G--GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
13333567 TGGTTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
830 TGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
13333611 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC-------GGACCAGAC
* ** * * * * *
13333676 CGAAGGCCGCGGCATCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GAG
40 CGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG
* * *
13333740 -A--A--A-C----CATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGATGATCGGGGGGG
105 CACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
13333795 CCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
169 CCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * * * * *
13333860 ATCCCTCTTTAAACCTCAAGAACTCACGCCCCCTTAATGAGGATTTGAAATTTTACAAGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * *
13333925 ACTAGTCGCCATTAAAGTGTCTGAAATGGGAACACTTTTCTCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * **
13333990 CTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCATATCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** ** * * * * * *
13334055 TTTTGGGGCCAAAACTCCTTCCG-AAATTTTTTTTAAAATCCCGAACCCTTAAAAGTCTCAAACA
428 -TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTGAAA-A
* ** * * *
13334119 TTGTTTGTGAAAA-A-AAAACGAGTCATACTTGGCCAGGAAACTTCAC-TGTAAGGGCTTAAGGG
491 AT-CATG-AAAAATAGAAAACGAGTCGT-CTT-GCCATGAAACTTCACGTG-AA-GGCTTAAGGG
*
13334181 ACCATTGTATG-A-TTACAAGCCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
550 ACCATTGTATGAATTTACAAG-CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * ** * *
13334244 AAACCCACTTACCACCCTATCGATGCACGGCTTGCGCATCTTGTCTCTCTGACCGGCATAGTGCC
614 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCCGCATAGTGCC
* * * * ** **
13334309 CGCCCGCCCGCTCGCTTGTTTCGTCGGTTAGCTTAGGCATACAAAAATCATTCCCAGTCTAAGAT
679 CGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
*
13334374 CAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
744 CAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * *
13334439 GGCTTGCACATTCCGCCCCTCTGG-CCGATCGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
809 GGCTTGCGCATCCCGCCCCTCTGGTCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
13334503 G
873 G
* * **
13334504 GCATACAGAGTTTATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC-GACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCACATGCTGG
* * * *
13334568 GCTTC-AGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATC-GCTGGAGCATCGCCGG
65 GC-TCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATC-GGAGCATCGTCGG
* *
13334631 AGAACCTGACCGGTGGTATTGGGGTTCC-AGCGATCGGAGGGGCC-GGGGGGTGTGCGCACATGA
128 AGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGG-GGGGCCGGGGGGGTGTGCGCACATGA
* *
13334694 TGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
13334759 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
13334824 AAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** ** *
13334889 TTTGTGCTTGCCAACAAAAATACAAGGATCACAACTATTAAGTTTGGGGCCAAAACTCCTTCTGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
13334954 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCTTGAAAAATAGAAAACGAGTCA
451 AAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
13335019 TCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAGGCCATAAATAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * *
13335084 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACAGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
13335149 TGCGCATCCCGTCTCTCTGG-CTG-A-CGT---AG--TGCCCGCCCGCTCGTTCCGTCGGTTCGT
646 TGCGCATCCCGTCTCTCTGGCCCGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
13335206 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGTGTTACGGCAGCA
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
13335266 CATGCTGGGC
Statistics
Matches: 2944, Mismatches: 391, Indels: 281
0.81 0.11 0.08
Matches are distributed among these distances:
865 72 0.02
866 1 0.00
867 56 0.02
868 4 0.00
869 1 0.00
870 2 0.00
871 2 0.00
872 22 0.01
873 106 0.04
874 247 0.08
875 69 0.02
876 552 0.19
877 7 0.00
878 45 0.02
879 1 0.00
880 1 0.00
881 3 0.00
882 91 0.03
883 9 0.00
884 2 0.00
885 1 0.00
886 4 0.00
887 92 0.03
888 1 0.00
889 4 0.00
890 1 0.00
891 4 0.00
892 9 0.00
893 97 0.03
894 2 0.00
895 2 0.00
896 5 0.00
897 8 0.00
898 90 0.03
899 4 0.00
900 3 0.00
901 1 0.00
902 264 0.09
903 44 0.01
904 35 0.01
905 17 0.01
906 117 0.04
907 26 0.01
908 3 0.00
909 4 0.00
910 1 0.00
911 4 0.00
912 10 0.00
913 65 0.02
914 1 0.00
915 2 0.00
918 5 0.00
921 5 0.00
922 1 0.00
924 1 0.00
925 1 0.00
926 2 0.00
927 125 0.04
928 135 0.05
929 8 0.00
930 190 0.06
931 257 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCACAAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCCGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13333514 original size:26 final size:26
Alignment explanation
Indices: 13333478--13333540 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
13333468 TCTAAGATCA
13333478 GACCTGACCGAGGGTTGTGGCAGCAG
1 GACCTGACCGAGGGTTGTGGCAGCAG
13333504 GACCTGACCGAGGGTTGTGGCAGCAG
1 GACCTGACCGAGGGTTGTGGCAGCAG
*
13333530 GACCCGACCGA
1 GACCTGACCGA
13333541 TCCCCGACTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.21, C:0.27, G:0.40, T:0.13
Consensus pattern (26 bp):
GACCTGACCGAGGGTTGTGGCAGCAG
Found at i:13333640 original size:26 final size:26
Alignment explanation
Indices: 13333611--13333663 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13333601 GTTGACTTAG
13333611 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13333637 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13333663 G
1 G
13333664 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13335862 original size:710 final size:706
Alignment explanation
Indices: 13334457--13335898 Score: 2234
Period size: 710 Copynumber: 2.0 Consensus size: 706
13334447 CATTCCGCCC
* ** * * * *
13334457 CTCTGGCCGATCG-AGCGCCCGTACGCTCGTTTCGTGGGTT-GACTTAGGCATACAGAGTTTATT
1 CTCTGGCCGA-CGTAGTGCCCGCCCGCTCGTTCCGTCGGTTCG-TTTAGGCATACAGAGTTCATT
* *
13334520 CCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTTCAGCATGTGCTGG
64 CCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGGCTTCAGCATGTGCTGG
* * * * * *
13334585 TGCCATATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGTGGTAT
129 TGCCATATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGCAGAACCTGACCGGCGGCAT
* *
13334650 TGGGGTTCCAGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
194 TGGGGTTCCAGCGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACT
13334715 TGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCAT
259 TGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCAT
13334780 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
324 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* ** * * * *
13334845 ATGGCCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAAT
389 ATGGCCACAAAATCTTGTACACTAAGAGTTTCTAGCTGAATTTTTTTGTGCATACCAAAAAAAAT
* **
13334910 ACAAGGATCACAACTATTAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGA
454 ACAAGGATCACAACTAGTAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
*
13334975 ACCGTAAAAAGTTTGAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGGCATGAAACTTCACGT
519 ACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGGCATGAAACTTCACGT
*
13335040 GAAGGCTTAAGGGAACATTGTATGAATTTACAGGCCATAAATATGGCATTGGCACATAGAAATAT
584 GAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAATATGGCATTGGCACATAGAAATAT
13335105 GAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACAGCTTGCGCATCCCGTCT
649 GAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACAGCTTGCGCATCCCGTCT
* *
13335163 CTCTGGCTGACGTAGTGCCCGCCCGCTCGTTCCGTCGGTTCGTTTAGGCATACGGAGTTCATTCC
1 CTCTGGCCGACGTAGTGCCCGCCCGCTCGTTCCGTCGGTTCGTTTAGGCATACAGAGTTCATTCC
* * * ** *
13335228 TAGTCTAAGATCAGA-TCGGACCGAGTGTTACGGCAGCACATGCTGGGCTTGGGCATGTGTTGGT
66 CAGTCTAAGATCAGACT-GGACCGAGGGTTACGACAGCACATGCTGGGCTTCAGCATGTGCTGGT
* *
13335292 GCCGTATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCTGCAGAACCTGACCGGCGGCATT
130 GCCATATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGCAGAACCTGACCGGCGGCATT
** *
13335357 GGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACT
195 GGGGTTCCAGCGATCGGAGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACT
*
13335422 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCACACCCCCTTAAAGAGCA
259 TGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTCACACCCCCTTAAAGAGCA
* *
13335486 TTTGAGATTTTACAGGTTTGCTGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
323 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
13335551 AATGGTCACAAAATCTTGTACACTAAGAGTTTCTAGCTG-ATTTCTTTTGTGCATACCAAAAAAA
388 AATGGCCACAAAATCTTGTACACTAAGAGTTTCTAGCTGAATTT-TTTTGTGCATACCAAAAAAA
* *
13335615 ATTCAAGGATCACGTCTACCTAGTAA-TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
452 ATACAAGGATCA---C-AACTAGTAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* *
13335679 TCCCGAACCGTAAAAAGTTTCTAAAAT-TGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAAC
513 TCCCGAACCGTAAAAAGTTTCAAAAATCT-TGAAAAATAGAAAACGAGTCATCTTGGCATGAAAC
*
13335743 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATATGGCATTGGCACATA
577 TTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAATATGGCATTGGCACATA
* *
13335808 GAAATATGAAGATGTGCCTAAACCTACCTACCA-TCCTATCGATCCACGGCTTGCGCATCCCGTC
642 GAAATATGAAGATGTGCCTAAACCCACCTACCACT-CTATCGATCCACAGCTTGCGCATCCCGTC
13335872 T
706 T
*
13335873 CTCTGGCCGGCGTAGTGCCCGCCCGC
1 CTCTGGCCGACGTAGTGCCCGCCCGC
13335899 CCGCTTTTTT
Statistics
Matches: 669, Mismatches: 55, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
705 3 0.00
706 188 0.28
707 225 0.34
709 2 0.00
710 244 0.36
711 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (706 bp):
CTCTGGCCGACGTAGTGCCCGCCCGCTCGTTCCGTCGGTTCGTTTAGGCATACAGAGTTCATTCC
CAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGGCTTCAGCATGTGCTGGTG
CCATATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGCAGAACCTGACCGGCGGCATTG
GGGTTCCAGCGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTG
GCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGCCACAAAATCTTGTACACTAAGAGTTTCTAGCTGAATTTTTTTGTGCATACCAAAAAAAATAC
AAGGATCACAACTAGTAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGGCATGAAACTTCACGTGA
AGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAATATGGCATTGGCACATAGAAATATGA
AGATGTGCCTAAACCCACCTACCACTCTATCGATCCACAGCTTGCGCATCCCGTCT
Found at i:13338058 original size:717 final size:711
Alignment explanation
Indices: 13336660--13338148 Score: 2222
Period size: 717 Copynumber: 2.1 Consensus size: 711
13336650 CAAGCTTAGA
* * * * * *
13336660 GCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
1 GCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** ** * *
13336725 CGGATTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGT
66 CGGACCGAGGGTTACGGCAGCACATGCTCCGCTCGGGCATGTGTTGGTGCCGCAATTTTCTTCGT
*
13336790 CGGGGCACGATCATCTGAGCTTCGTCGGAGAACCTGACTGGCGGCATTAAGGTTCCGACGATCGG
131 CGGGGCACGATCATCTGAGCATCGTCGGAGAACCTGACTGGCGGCATTAAGGTTCCGACGATCGG
13336855 GGGAGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTAATATTGGCC
196 GGGAGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTAATATTGGCC
* * * *
13336920 CCCTATCTCTCATTAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTAAGATTTTACAGGTT
261 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCAAGATTTTACAGGTT
* *
13336985 TGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
326 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
13337050 TACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGACCACGTCTAC
391 TACACTTCGAGTTTTTAGCAGAATTTTTTTATGCATGCCAACAAAAATACAACGACCACATCTAC
* *
13337115 CAAGTTTGGGGCCAAAATCCCTTCTGAAAAAATTTTGAAAAATCCAGAACCGCAAAAAGTTTTAA
456 CAAGTTTGGGGCCAAAATCCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTAA
* *
13337180 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCA
521 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
13337245 TTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACT
586 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCCAAACT
*
13337310 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCC
651 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCC
13337371 GCCCGCCCGCCCGCACATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
13337436 GGACCGGACCGAGGGTTACGGCAGCATATGCTCCGCTCGGGCATGT-TCTGGTGCCGTAATTTTC
62 GGACCGGACCGAGGGTTACGGCAGCACATGCTCCGCTCGGGCATGTGT-TGGTGCCGCAATTTTC
* **
13337500 TTCGTCGGGGCACCG-TCGT-TGGAGCATCGTCGGAGAACCTGA-TCGGCGGCATTGGGGGTTCC
126 TTCGTCGGGGCA-CGATCATCT-GAGCATCGTCGGAGAACCTGACT-GGCGGCATT-AAGGTTCC
* * * *
13337562 GGCGATTGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
187 GACGATCGGGGGAGCCGA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCT
* * *
13337627 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGACCCCCTTAAAGAGCATTCGAGAT
251 AATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCAAGAT
**
13337692 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGGTACTTTTTTCAAATGGTCA
316 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
* *
13337757 CAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTTGTGCATGCCAACTAAAATACAACGA
381 CAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTTATGCATGCCAACAAAAATACAACGA
* *
13337822 TCACATCTACCAAGTTTGGGGCCAAAA-CTCCTTCCGAAAAAA-TTTAAAAACATCACA-AACCT
446 CCACATCTACCAAGTTTGGGGCCAAAATC-CCTTCCGAAAAAATTTTAAAAA-ATC-CAGAACCG
* * *
13337884 TAAAAA-TTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
508 CAAAAAGTTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
13337948 GGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCAAGCAAAAATATGAA
572 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAA
*
13338013 GATGTGCCCAAA-TCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
637 GATGTGCCCAAACT-CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
*
13338077 GCGTAGTGCCC
701 GCATAGTGCCC
** * * * *
13338088 GCCCGCCCGTTCGTTTCGTCAGTTGGCTTTGTCATACGGAGTTCGTTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
13338149 AGAATGGACT
Statistics
Matches: 701, Mismatches: 62, Indels: 28
0.89 0.08 0.04
Matches are distributed among these distances:
711 11 0.02
713 44 0.06
714 3 0.00
715 142 0.20
716 36 0.05
717 463 0.66
718 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (711 bp):
GCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTACGGCAGCACATGCTCCGCTCGGGCATGTGTTGGTGCCGCAATTTTCTTCGT
CGGGGCACGATCATCTGAGCATCGTCGGAGAACCTGACTGGCGGCATTAAGGTTCCGACGATCGG
GGGAGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTAATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCAAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCAGAATTTTTTTATGCATGCCAACAAAAATACAACGACCACATCTAC
CAAGTTTGGGGCCAAAATCCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTAA
AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCCAAACT
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCC
Found at i:13338810 original size:895 final size:898
Alignment explanation
Indices: 13337406--13339558 Score: 2993
Period size: 895 Copynumber: 2.4 Consensus size: 898
13337396 GTTGGCTTAG
* * * * **
13337406 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCATATGCTCCG
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTAGG
* * * *
13337471 CTCGGGCATGTTCTGGTGCCGTAATTTTCTTCGTCGGGGCACCGTCGTTGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * *
13337535 AACCTGATCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGCCGAGGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCGGCATT-GGGGTTCCGACGA-TCGGGGGGCCGA-GGGGGTGTGCGCACATGAT
13337600 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
13337665 CAGACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** *
13337730 AATGGGGGTACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTT
322 AATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTT
**
13337795 TTGTGCATGCCAACTAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAAAAAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
13337860 AAAATTTAAAAACATCACAAACCTTAAAAATTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTAAAAACATCACAAACCTCAAAAATATTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
13337925 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGAATGAATTTACAAGCCATAAAAATG
* * * * *
13337990 GCATTGGCA-AGCAAAAATATGAAGATGTGCCCAAATCCACCTACCACCCTATTGATCCACGGCT
582 GCATTGGCACA-CAAAAATATAAAGATGTGCCCAAACCCACCTACCACACTATCGATCCACAGCT
* * * *
13338054 TGCGCATCCCGCCTCTCTGGCCGGCGTAG-TGCCCG-C-CC-GCCCGTTCGTTTCGTC-AGTTGG
646 TGCGCATCCCGCCTCTCTGGCCGACGTAGCCGCCCGCCACCTGCCCGCTCGTTTCGTCGA-TAGG
* * * ** * * *
13338114 CTTTGTCATACGGAGTTCG-TTCCCAGTCTAAGATCAGAA-TGGACTAAAGGTTACGGTAGTAGG
710 CTTAGGCATACGGAGTT-GATTCCCAATCTAAGAT-AGAACCAGACCAAAGGTTACAGTAGCAGG
** * * * * * ** * * *
13338177 ATCGGTAGCACGTAGAGGGGGACCCGATCGATCGTCGGCTTGCGCATCCCGCCCCTTTGGCCGAC
773 ATCGACAGCACGCAAAAGGGGACCCGACCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGAC
* * *
13338242 TGAGCGTCCGCACACTCGTTTCATAGGTTGACTTAGGCAGACGGAGTTCATTCCCAATCTAA
838 TGAACGCCCGCACACTCGTTTCATAGGTTGACTTAGGCAGACAGAGTTCATT-CCAATCTAA
* *
13338304 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCCGCACATGCTAGG
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTAGG
* * ** **
13338369 CTCAGGCATCTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * * *
13338434 ACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGAAGGGGGTGTGTGCACATGATTTA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-AGGGGGTGTGCGCACATGATGTG
*
13338499 CGAT-GGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13338563 ACCCCCTTAAAGAGCTTTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAAT
260 ACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13338628 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTTG
* *
13338693 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
13338758 ATTTTAAAAA-ATCTCAAACCTCAAAAATATTCGAAAATCGTGAAATATAGAAAACGAGTCGTCT
455 A-TTTAAAAACATCACAAACCTCAAAAATATTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
13338822 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGAATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGAATGAATTTACAAGCCATAAAAATGGC
* *
13338887 ATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACAGCTTGC
584 ATTGGCACACAAAAATATAAAGATGTGCCCAAACCCACCTACCACACTATCGATCCACAGCTTGC
* *
13338952 GCATCCCGTCTCTCTGGCCGACGTAGCACCCGCTCGCCTACCTGCCCGCTCGTTTCGTCGATAGG
649 GCATCCCGCCTCTCTGGCCGACGTAG---CCGCCCGCC-ACCTGCCCGCTCGTTTCGTCGATAGG
* * * * *
13339017 CTTAGGCATATGGAGTTGATTCCCAATCTAAGATTGAACCAGACCGAGGGTTGCAGTAGCAGGAT
710 CTTAGGCATACGGAGTTGATTCCCAATCTAAGATAGAACCAGACCAAAGGTTACAGTAGCAGGAT
*
13339082 CGACAGCACGCAAAAGGGGACCCGACCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTG
775 CGACAGCACGCAAAAGGGGACCCGACCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTG
* ** * * * *
13339147 AATGCCCGCACGTTCGTTTCGTAGGTTGACTTAGGCATATAGAGTTCATTCCAGTCTAA
840 AACGCCCGCACACTCGTTTCATAGGTTGACTTAGGCAGACAGAGTTCATTCCAATCTAA
* * * *
13339206 GCATACGGAGTTCATTCACAGTCTAAGAGTGA-ACTGGATCGAGGGTTACGACAGCACGTGCTAG
1 GCATACGGAGTTCATTCACAGTCTAAGA-TCAGACTGGACCGAGGGTTACGGCAGCACATGCTAG
* * * *
13339270 GCTCGGGCATGTGCTGATGCCGTATTTTTTTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
* * *
13339335 AACTTGACCGGCGGCATTGGGGTTCTGATGATCGAGGGGGCCG-GGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGAGGGGGTGTGCGCACATGATGT
* *
13339399 GCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
13339464 CACCCCCTTAAAGAGCTTTTGAGATTTTACAGATTTGCCGCCAATAGCCATAAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
13339529 TGGGGACAC-TTTTCTCAAATGGTCACAAAA
324 TGGGGACACTTTTTC-CAAATGGTCACAAAA
13339559 AACAAGGATC
Statistics
Matches: 1104, Mismatches: 132, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
895 430 0.39
896 42 0.04
897 13 0.01
898 125 0.11
899 5 0.00
900 1 0.00
901 27 0.02
902 293 0.27
903 167 0.15
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTTGT
GCATGCCAAAAAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTAAAAACATCACAAACCTCAAAAATATTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGAATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATAAAGATGTGCCCAAACCCACCTACCACACTATCGATCCACAGCTTGCGC
ATCCCGCCTCTCTGGCCGACGTAGCCGCCCGCCACCTGCCCGCTCGTTTCGTCGATAGGCTTAGG
CATACGGAGTTGATTCCCAATCTAAGATAGAACCAGACCAAAGGTTACAGTAGCAGGATCGACAG
CACGCAAAAGGGGACCCGACCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAACGCC
CGCACACTCGTTTCATAGGTTGACTTAGGCAGACAGAGTTCATTCCAATCTAA
Found at i:13342518 original size:900 final size:892
Alignment explanation
Indices: 13340756--13345197 Score: 5334
Period size: 903 Copynumber: 5.0 Consensus size: 892
13340746 GTTGGCTTAG
* * * * *
13340756 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCGGACTGAGGGTTCCAGCAGCACGTGCTGG
1 GCATACGGAGTTCATTCCC-GTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
** *
13340820 GCTCAAGCACGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG-GCAT--CCGGAG
* * * *
13340885 AACCTGACCGACGGTATTGGGGTTTCGGCGATCAGGGGGGCCGGGGGGGTGTGTGCACATGATGT
126 AACCTGACCG-CGGCATTGGGGTTCCGGCGATC-GGGGGGGCGGGGGGGTGTGCGCACATGATGT
* * ** * *
13340950 GCAATGGGTGCTCGTACTCAGCCCTTATTTTGGCCACCTATCCCTCATCAAACCTTGAGAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCA
* *
13341015 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAA
253 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
13341080 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTT
317 TGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
13341145 GTTCATGCCAATAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
382 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
13341210 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCCTAAAAAATAGAAAACGAGTCATCT
447 AATTTT-AAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13341275 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
13341340 ATTGGCACATATAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
575 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
13341405 GCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCACCCGC-CT-GCTCGTTTTGTCGGTTGTCT
640 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCGCTCGCTCGTTTCGTCGGTTGGCT
* * * * * *
13341468 TAGGAATACGGAGTTCATTCCTAGTCTAAGATCAGATC-TCACCGAGGCTTGTGGCAGCAAGG-T
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGT-ACCGAGGGTTGCGGCAGC-AGGAT
* * ** * * ** * * * * *
13341531 CAGCAGCACGTAGAGGGAGATACGGCCAATCCTTGGCATACGCATCCCTCCCCTGTGGCCGACTG
768 CGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
13341596 AGCACCCGTACACTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGACTAA
833 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13341656 GCATATGGAGTTCATTCCCGTCTAAGACCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
13341721 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTCCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG-GCA-T-CCGGAGAA
* *
13341786 CCTGACCAGCGGCATTGAGGTTCTGGCGATCAGGGGGGGCGGGGAGGGTGTGCGCACATGATGTG
128 CCTGACC-GCGGCATTGGGGTTCCGGCGATC-GGGGGGGCGGGG-GGGTGTGCGCACATGATGTG
* * ** *
13341851 TGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCTCTATCCCTCATCAAACCTAAAGAACTCAA
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
13341916 ACCCACTGAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTAAAAT
254 ACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13341981 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
318 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
13342046 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGGTTCAACACTCCTTACGAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
13342110 ATTTTAAAAAGTCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
448 ATTTTAAAAA-TC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
13342175 GCCATGAAACTTCA-TTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
511 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
13342238 TTGACAAGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCAATCGATCCATGGCTTGCG
576 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
13342303 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGCTCGCTCGTTTCGTTGGTTGCC
641 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG--CGCTCGCTCGTTTCGTCGGTTGGC
*
13342368 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGTACCGAGGGTTGCGGCAGCAGGATT
704 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGTACCGAGGGTTGCGGCAGCAGGATC
* * * *
13342433 GGCAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTACGTATCCC-CCCCTCTGGCCGGCTGA
769 GGCAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
13342497 GCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
834 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
13342556 GCATACGGAGTTCATTCCCAGTTTAAAATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCC-GTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
13342621 CTCGGGCATGTGTTGGTGCTGTATTTTTCTTCGTCAAGGCACCA---TC--G---CCGGAGAACC
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGGCATCCGGAGAACC
* * * ** * *
13342678 TGACCAACGACATTGGGGTTCCGCCGATCGGAGGGACCGGCGGGGTGTGCACACATGATGTGCGA
130 TGACC-GCGGCATTGGGGTTCCGGCGATCGG-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
*
13342743 TGGGTGCTGGTACTTGG--C---------CCCCTATCCCTCATCAAACCTCGATAACTCACACCC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CC
*
13342797 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
13342862 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGATTTTTTTTGTGCA
322 ACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
13342927 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
13342992 TAAAACATCCCGAACCGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCCA
452 TAAAA-AT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
13343057 TGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
13343122 CTCGCAGAAATATGAAGATGTGCCTAAA-CTACCTACCAACCTATCGATCTACGGCTTGCGCATC
580 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
13343186 CTGTCTCTCTGGCTGGCATAGT----GCCCGCCCGC-C-CGCTCGTTTCATCAGTTGGCTTAGGT
645 CCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCGCTCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * * * **
13343245 ATACGAAGTTCATTCCCAGTCGAAGATCAAATCAG-ATCGAAGGTTGCGACAGCAAGATCGATAG
710 ATACGGAGTTCATTCCCAGTCTAAGATTAGA-CCGTACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * * *
13343309 CAAGCAGTGGGGGACCCAACCGATCCCGGGCTTGCGCATCCTGCCCCTCTGGTCGGTTGAGCGCC
774 CACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
13343374 CGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
13343428 G-AT-C--AG---A-------C------CGGACT-----GAGGGTTGCGGCAGCACATTCTGGGC
1 GCATACGGAGTTCATTCCCGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
13343468 TCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCA---TC--G---CCGGACAACCT
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGGCATCCGGAGAACCT
*
13343525 GACCGACGGCATTGGGGTT-CGAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
131 GACCG-CGGCATTGGGGTTCCG-GCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAT
*
13343589 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACAC
194 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAC-C
* *
13343654 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTTTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
13343719 ACACTTTTTTCAAA-TGATCACAAAATATTGTACACTTTGAGTTTTTAGTTGAATTGTTTTGTGC
322 ACACTTTTTTCAAATTG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * * * *
13343783 ACGCTGACAAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATT
386 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
13343848 TTAAAAAATACCAAACCGTAAGAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
451 TT-AAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
13343913 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
13343978 GCACGTAAAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATTGATCCACGGCTTGCGCAT
579 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *** * ** * * * *
13344043 CCCATCTCTCTGGCCGGTGCAGTGTCCGCCCATCGGCCCGTCCGCTCATTTCATCGGTTGGCTTA
644 CCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCGC-T-CGCTCGTTTCGTCGGTTGGCTTA
* * * **
13344108 GGGATACGGAGTTCATTCCCAGTCTAAGA-TAGGACCGAACAGAGGGTTGCACCAGCAGGATC-G
707 GGCATACGGAGTTCATTCCCAGTCTAAGATTA-GACCGTACCGAGGGTTGCGGCAGCAGGATCGG
* * ** * * *
13344171 CTAGCTCATAGAGGGGGACCTTGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAA
771 C-AGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
13344236 TGCACGCACGTTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
13344294 GCATGCGAAGTTCATTCGCAGTCTAAGATCGGACCCGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTC-CCGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
13344359 CTCAGGCATGTGCTGGTGCC-CTATTTTTCTTCACCGGGTCACCATCG-CAGGGGCATTGCCGGA
65 CTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGTCGGGGCACCATCGTC--GGGCA-T-CCGGA
* * * ** * *
13344422 GAACCTGACCTTCAGCACTGGGGTTCCGATGATCGGGGGGGCCGGGGGTGTGTGTGCACATGATG
125 GAACCTGACC-GCGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATG
* * *
13344487 TGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCTATCCCTCACCAAACCTTGAGAACTCA
188 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
13344552 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAACTGTCTGAAA
253 C-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13344617 TGGGGACACTTTTTTC-AAGTGATCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTT
317 TGGGGACACTTTTTTCAAATTG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * * * * *
13344680 TTGTGCATGACAACAAAAATAC--GCCATTCACCTCTACCAGGTTCGGGGCTAAAACTCCTTCCG
380 TTGTGCATGCCAACAAAAATACAAG-GA-TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
13344743 AAAAAATTTTGAAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
443 AAAAAATTTT-AAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* ***
13344808 GTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAAAAATAAAAA
506 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
13344873 TTGCATCGGCACGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCTTATCGATCCACGGC
571 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
13344938 TTACGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGTCCCTCCGCCCGCTCGTTTTGTCGG
636 TTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCG-CCC-GCGCTCGCTCGTTTCGTCGG
* * ** * * *
13345003 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATAGAGGGTTACAGTAGCA
699 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGTACCGAGGGTTGCGGCAGCA
* * * * * * * * *
13345068 GGATCGACAGGACGCAGAGGGGGACCCAACCTATCCTCAGCTTGCGCATCCCGTCCCTCTTGCCG
764 GGATCGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
13345133 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTAAATTAGGCATACGGAGTTCATTCCCAGTCTAA
829 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
13345197 G
1 G
13345198 ATCGGATCAG
Statistics
Matches: 3054, Mismatches: 383, Indels: 207
0.84 0.11 0.06
Matches are distributed among these distances:
845 47 0.02
846 98 0.03
847 1 0.00
851 5 0.00
856 2 0.00
857 352 0.12
858 51 0.02
862 7 0.00
863 1 0.00
865 4 0.00
866 168 0.06
867 2 0.00
868 3 0.00
870 3 0.00
871 105 0.03
872 74 0.02
873 2 0.00
875 9 0.00
877 180 0.06
878 99 0.03
879 58 0.02
880 68 0.02
881 1 0.00
887 6 0.00
889 40 0.01
890 41 0.01
892 61 0.02
894 1 0.00
895 1 0.00
897 134 0.04
898 14 0.00
899 227 0.07
900 334 0.11
901 183 0.06
902 7 0.00
903 603 0.20
904 60 0.02
905 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGGCATCCGGAGAACCT
GACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCATAGTGCCCGCCCGCCCGCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATTAGACCGTACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG
AGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13343730 original size:857 final size:852
Alignment explanation
Indices: 13342556--13352151 Score: 4870
Period size: 903 Copynumber: 10.9 Consensus size: 852
13342546 CCCAGTCTAA
* * * *
13342556 GCATACGGAGTTCATTCCCAGTTTAAAATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
13342621 CTCGGGCATGTGTTGGTGCTGTATTTTTCTTCGTCAAGGCACCATCGCCGGAGAACCTGACCAAC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCAAC
* * * * *
13342686 GACATTGGGGTTCCGCCGATCGGAGGGACCGGCGGGGTGTGCACACATGATGTGCGATGGGTGCT
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
13342751 GGTA-------C----TTGGCCCCCTATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAG
195 GGTACTTGGCCCTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAG
13342805 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTT
260 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTT
* *
13342870 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGATTTTTTTTGTGCATGCCAACA
325 TTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACA
13342935 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAACAT
390 AAAATAC-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAA-AT
* * *
13343000 CCCGAACCGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
453 CCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
13343065 CACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAGA
518 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
13343130 AATATGAAGATGTGCCTAAACTACCTACCAACCTATCGATCTACGGCTTGCGCATCCTGTCTCTC
583 AATATGAAGATGTGCCTAAACTACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
13343195 TGGCTGGCATAGT-GCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGTATACGAAGTTCATT
648 TGGCCGGCATAGTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
13343259 CCCAGTCGAAGATCAAATCAGATCGAAGGTTGCGA-CAGCAAGATCGATAGCAAGCAGTGGGGGA
713 CCCAGTCTAAGAT-AGA-CAGATCGAGGGTTGC-ACCAGCAGGATCGATAGCAAGCAGAGGGGGA
* * *
13343323 CCCAACCGATCCCGGGCTTGCGCATCCTGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTC
775 CCCAACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
13343388 GTGGGTTGACTTTG
839 GTGGGTTAACTTAG
* * *
13343402 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13343467 CTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGACAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCAAC
13343532 GGCATTGGGGTT-CGAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
131 GGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
13343596 GGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACACCCTTAAA
195 GGTACTTGGCCCTT-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAA
*
13343661 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTTTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTT
* * * * * * **
13343726 TTTCAAATGATCACAAAATATTGTACACTTTGAGTTTTTAGTTGAATTGTTTTGTGCACGCTGAC
324 TTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAC
* *
13343791 AAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTT-CGAAAAAATTTTAAAAA
389 AAAAATAC-AGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAAAAATTTT-AAAA
* * *
13343855 ATACCAAACCGTAAGAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
451 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
13343920 TTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
516 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
13343985 AAAATATGAAGATGTGCCTAAACCCT-CCTACCACCCTATTGATCCACGGCTTGCGCATCCCATC
581 GAAATATGAAGATGTGCCTAAA--CTACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
13344049 TCTCTGGCCGGTGCAGT-GTCCGCCCATCGGCCCGTCCGCTCATTTCATCGGTTGGCTTAGGGAT
644 TCTCTGGCC-G-GCA-TAGT-CG-CC--C-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * *
13344113 ACGGAGTTCATTCCCAGTCTAAGATAGGACCGAACAGAGGGTTGCACCAGCAGGATCGCTAGCTC
701 ACGGAGTTCATTCCCAGTCTAAGATA-GACAGATC-GAGGGTTGCACCAGCAGGATCGATAGC-A
* **** * ** *
13344178 A-TAGAGGGGGACCTTGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAATGCACG
763 AGCAGAGGGGGACCCAACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
13344242 CACGTTCGTTTCGTGGGTTCACTTAG
827 CACGCTCGTTTCGTGGGTTAACTTAG
13344268 GCATACGGAGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTCGCAGTCTAAGATCGGACCCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C----A---GA--C---
* * ** *
13344333 CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCCTATTTTTCTTCACCGGGT
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
** * * *
13344398 CACCATCGCAGGGGCATTGCCGGAGAACCTGACCTTCAGCACTGGGGTTCCGATGATCGGGGGGG
105 CACCAT--------C---GCCGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGG
*
13344463 CCGGGGGTGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGG-CCCCTA
159 CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-TTTATTGGCCCCCTA
* *
13344527 TCCCTCACCAAACCTTGAGAACTCACA-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
222 TCCCTCATCAAACCTCGAGAACTCACACA-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
13344591 GCCAGTAGCCGTTAAACTGTCTGAAATGGGGACACTTTTTTCAAGTGATCACAAAATCTTGTACA
286 GCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACA
* * * * *
13344656 CTTCGAGTTTTTAGCTAATTTTTTTTGTGCATGACAACAAAAATAC-GCCATTCACCTCTACCAG
351 CTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAG-GA-TCACGTCTACCAA
* * * * *
13344720 GTTCGGGGCTAAAACTCCTTCCGAAAAAATTTTGAAAAATCTCAAACCATAAAAAGTTTCAAAAA
414 GTTTGGGGCCAAAACTCTTTCCGAAAAAATTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAA
* *
13344785 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTG
478 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*** * * * *
13344850 TATGAATTTACAAAAAATAAAAATTGCATCGGCACGCAGAAATATGAAGATGTGCCTAAGCCCAC
543 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA-ACTAC
* *
13344915 CTACC-ACCTTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGT
607 CTACCAACC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT---CGCCCG-
** *
13344979 CCCTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
667 --C-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAG
* * * ** * * * * *
13345044 ACCGGATAGAGGGTTACAGTAGCAGGATCGACAGGACGCAGAGGGGGACCCAACCTATCCTCAGC
728 A-CAGATCGAGGGTTGCACCAGCAGGATCGATAGCAAGCAGAGGGGGACCCAACCGATCC-CGGC
* * * *
13345109 TTGCGCATCCCGTCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAAATTAG
791 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
* * *
13345171 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGGGGCATTGGGGTTTCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA-----G---C-A
** * ** *** ** * * * **
13345236 CGATCGGGGGGGCTAGGGGGTGTGCACACGTGATGTG-CG-ATGGGTGGTGGTACTTGGCCAATA
57 C-AT--GCTGGGCTCGGGCATGTG----C-TG--GTGCCGTATTTTTCTTCGT-C-GGGGCACCA
** * * ** * ****** * * ** * ******** *
13345299 TC-CCTCATCAAACCTCAATAAC-TCACACCCCCTT--GAAGAGCATTTGAGATTTTACAGGTTT
110 TCGCCGGA--GAACCTGACCAACGGCA-TTGGGGTTCCGACGATC--GGGGGGGCCGGGGGGTGT
* * * ** ** * * * * *** * * **
13345360 GC-TACCA-G-T-AGCCATTAAAGTGTCT-CAAATGAGGACACTTT-TT--TCAAATGGTCACAA
170 GCGCA-CATGATGTGCGA-T-GGGTG-CTGGTACT-TGG-CCCTTTATTGGCCCCCT-ATCCCTC
* ** * ** *** ** ** ** *
13345417 AGTCTAAGATCG-GACCGGAC-CGAGGGTTACGGTAGCACTTGTTG-GGCTCGAGCA--TCTGCT
228 A-TCAAACCTCGAGAACTCACAC-ACCCTTAAAG-AGCA--T-TTGAGATTTTA-CAGGTTTGCT
* ** **** ** ** *** *
13345477 G-GAGCCG-CATTTTTCT-TCATCGAGGCACCATCACCGGAGCA-TCGTCGGAGAACCTGACCGA
286 GCCAGTAGCCATTCAAGTGTC-T-GA---A--AT--GGGGA-CACTTTTTTCA-AA--TGATC-A
** * * * ** **** * ****** * ** *
13345538 CGGCAATGTGGTTC-CGACGA-TCGTGGGGGCCG--GGGGGGTGTGC--G-C-ACATGATGTGCG
337 C-AAAATCTTGTACACTTCGAGT--TTTTAGCTGATTTTTTTTGTGCATGCCAACA-AAAATAC-
* ** * * * ** *** ** *
13345595 ATGGGTGCTGGTTTTTGGCCCTTA-TATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACA
397 A-GGAT-CACG--TCT--ACC-AAGT-TTGG-GGCC-AAAACTC-T---TTC-CGA-AA---AAA
*** * ** * * * *** * * ** * *
13345659 TCTCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCAATAAAATGTCTGAAAT
443 T-T--TTAAA-A--ATCCCAAACCGTAAAAAGTTT-C-AAAAATCG-TGA-AAAA--T-AGAAAA
* * * ** ** * * ** * * **
13345723 GGGGACG-CTT--TTTTCAATTGGTCAC--AAAATCTT---GTA-CACT-T-TGAATTT-TTAGC
495 CGAGTCGTCTTGCCATGAAACT--TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *** * * * * ** * * *****
13345776 C---GAAGT-TTTTTGTGCATGCCAAAAAAAATTAAAAGGATCACGTCTACCAAGTTTGGGGCCA
558 CATAAAAATGGCATTG-GCACG-C-AGAAATA-T-GAA-GAT-GTGCCTA--AA-CTACCTACC-
** **** **** * *** *
13345837 AAACTCCT-TCTGA-AAAAATTTTAAAAAATCCCGAATTGCAAAAAGTTTCAATAATCGTGAAAA
612 -AA--CCTATC-GATCCACGGCTT-GCGCATCCCG---T-C------TCTC--TGGCCG-G---C
* ** ** * ** ** * * * **
13345900 ATAGAAAACGAGTCGTCTTGCCATGAAAC--TTCAT-GTGAAGGCTTAAGGCACCATTGTA-TGA
656 ATAG---TCG-CCCG-CCCGCC-CG-CTCGTTTCATCG-GTTGGCTT-AGGCA-TA-CGGAGTTC
* * ** * * ** * *
13345961 ATT--TAG---AAGCCATA-A-AAAT-G-GCATTGGCATGCAGAAATATGAAGATGTGCTTGAAC
710 ATTCCCAGTCTAAG--ATAGACAGATCGAGGGTT-GCA-CCAGCAGGAT--CGAT-AGC---AA-
* ****** * * * * * * *
13346017 CCA-CTTACCACCCTATCGGTCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
764 GCAGAGGGGGACCCAACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGC-T-GAG--CGC
* **
13346081 CCGTC-CGCTCATTTCGTGGGTTGGCTTAG
824 CCG-CACGCTCGTTTCGTGGGTTAACTTAG
* ** * * *
13346110 GCATACGGAGTTCATTCGCAGTCTAAGATTGGATCAGACCGAGGG--G-GGTTCATTCCCA-GTC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG--CA-GCACATG-C
** * * **** * * ** * **
13346171 TAAGATC-GG-A--T-C----ACCG-A-AGAACCT-GACCGATG-A-CATTG--GG-GTTCCTG-
62 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-TCGGGGCACCATCGCCGGAGAACCTGA
* * * *** * *
13346218 CGATCGG----GGGG--CCG--G---GGGGGTGTCCGCACATGATGTGCG---ATGGCTGCTG-G
126 CCAACGGCATTGGGGTTCCGACGATCGGGGG-GGCCG--GGGGGTGTGCGCACAT-GATG-TGCG
* ** ** ** ** ** * ***
13346268 TACTTGGCCCTTATA-TTGGCCCCCTA-T--CCCTTATCAAACCTCA--AGAA-CTCACACCTC-
186 -A-TGGGTGCTGGTACTTGGCCCTTTATTGGCCC-CCT-ATCCCTCATCA-AACCTC-GAGAACT
* * *
13346325 C--------TTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATT-AA-AG--TG-
245 CACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGA
*
13346377 --T-------C---TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
310 AATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTT
* * *
13346430 TTT-TGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCGA
374 TTTGTGCATGCCAACAAAAATAC-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGA
* * * *
13346493 AAAAATTTTAGAAAATCCCGAACC-TCAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
438 AAAAATTTTA-AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
13346557 TCTTACCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAAT
502 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
13346621 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
567 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CTACCTACCAACCTATCGATCCACGGCT
* ** * * * * * *
13346686 TCCGCATTTCGTCTCTCTGGCCAGCGTAGTGCTCACCCGCCCACCCACCCACCCGCTTGTTTCGT
631 TGCGCATCCCGTCTCTCTGGCCGGCATA--G-T----CG----CCCGCCCGCCCGCTCGTTTCAT
* *
13346751 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGAGTAGACCGAGGGTTGCGA-C
685 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATA-GA-CAGATCGAGGGTTGC-ACC
* ** * * * * *
13346815 AGTAGGATCGGCAGCACA-CAGAGAGGGACCCGACCAATCCCCAGCTTGCGCATCCTGCCCCTCT
747 AGCAGGATCGATAGCA-AGCAGAGGGGGACCCAACCGAT-CCCGGCTTGCGCATCCCGCCCCTCT
* * * * ** * *
13346879 GGCTGGCTGAGTGCCCGCACACTCATTTCGTGTTTTGACCTAG
810 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
* *
13346922 GCATACGAAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAGGTTCGGACCAAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-----A------GA-C---C
* * * * *
13346987 TGAGCGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
41 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * *
13347052 TACCATCGTCGGAGCATCGTCAGAGAACCTGATCGACGGCATTGGGGTTCC-AGCAATCGGGGGG
105 CACCA---TC---GC--CG---GAGAACCTGACCAACGGCATTGGGGTTCCGA-CGATCGGGGGG
** *
13347116 G-CTAGGGG-GTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
158 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT-TATTGGCCCCCTA
* * * *
13347179 TCCCTCATCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTG
222 TCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * * *
13347244 CTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCAC
287 CCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
** ** *
13347309 TTCGAGTTTTTAGCTGAATTTTTTTTGCACATGTGAACAAAAATATAGGGATCACGTCTACCAAG
352 TTCGAGTTTTTAGCTG-ATTTTTTTTGTGCATGCCAACAAAAATACA-GGATCACGTCTACCAAG
* * * *
13347374 TTTGGGGACAAAACTCTTTCCAAAAAAATTTTCAACAATCCCGAACCGTAAAAAGTTTCAAAAAT
415 TTTGGGGCCAAAACTCTTTCCGAAAAAATTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
* *
13347439 CGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGT
479 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * * *
13347504 ATGAATTTACAAGCCATGAAAATGGCATTGGTATGCAAAAATATGAAGATGTTCCTAAACCCACC
544 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CTACC
* * * ** *
13347569 TACCACCCTATCGATCCACGGCTTACGCATCTCGTCTCTCTGGCCGGTGTAGTACCCGTCCGCCC
608 TACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT---CGCCCGCCC
* * * * *
13347634 GTCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGAACCAGA
670 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG-A-CAGA
* ** * * * * * ** *
13347699 CCGAGGGTTGCGGCAGCAGAATC-AGCAGTAAGTAGAGGGGGACCCGATTGATCCCCGGCTTGTG
733 TCGAGGGTTGCACCAGCAGGATCGA-TAGCAAGCAGAGGGGGACCCAACCGAT-CCCGGCTTGCG
* * * * * * * *
13347763 CATCCCACCCTTCTAGCTGGCTAAACGCCCGCACACTCGTTTCGTGGGTTGACTTAG
796 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
13347820 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC----A---GACCAGAC
* * * *
13347885 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCAGTTTTCTTCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * ** * *
13347950 CACCATCACCAGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTTCGGTGATTGGAGGGG
105 CACCAT---C---G---C--CGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
13348015 CCGGGGGGTGTGCGCGCATGATATGCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTAT
159 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT-TATTGGCCCCCTAT
*
13348080 CCCTCATCAAACCTCGAGAACT--CAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGC
223 CCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * * *
13348142 CAGTAGCAATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCTCAAAATATTGTACACT
288 CAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACT
* * * * *
13348207 TCAAGTTTTTAGCTTAATTTATTTTGTGCATGCCAACAAAAATACAAGAATCATGTCTACCAAGT
353 TCGAGTTTTTAGC-TGATTTTTTTTGTGCATGCCAACAAAAATAC-AGGATCACGTCTACCAAGT
* * * *
13348272 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATC
416 TTGGGGCCAAAACTCTTTCCGAAAAAATTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* *
13348337 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTA
480 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** *
13348402 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
545 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CTACCT
* * * * * *
13348467 ACC-ACCTTATCGATCCATGGCTTGCACATCCCATCTCTCTGGCCTGCGTAGCCCCCGCCCGTCT
609 ACCAACC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAG---TCG-CC--C-
* * * *
13348531 GCCCGCCCTCTCGTTTGATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGTC
666 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGAC
* * *** * * * * * * *
13348596 CGAACAGAGGGTTGTGGCAGCAAGATCGGTAGGACGCAGAGGGGGACCCGACCAATCCCTCGCTT
730 AGATC-GAGGGTTGCACCAGCAGGATCGATAGCAAGCAGAGGGGGACCCAACCGATCCC-GGCTT
* * * *
13348661 GCGCATCCCACCCCTTTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
793 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC----G-T-G----GG-TTA
13348726 CGGAGTTCATTCCTAG
847 ---A---C--T--TAG
* * * *
13348742 TCTAAGCATCCGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATG
* *
13348807 CTGGGCTCGAGCATGTGCTGGTGTCAC-T-TTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCG
61 CTGGGCTCGGGCATGTGCTGGTG-C-CGTATTTTTCTTCGTCGGGGCACCA---TC---G---C-
* * * * * *
13348870 TCGGAGAGCCTGACCGATGGCATTAGGGTTTCGACGATCGGGGGGGCCGGGGTGGTGCGCGCACA
114 -CGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACA
* *
13348935 TGGTATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
177 TGATGTGCGATGGGTGCTGGTACTTGGCCCTT-TATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
13349000 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGT
241 AACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGT
* * * * *
13349065 TTGAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
306 CTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT
* *
13349130 TGTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC
371 TTTTTTGTGCATGCCAACAAAAATAC-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC
* *
13349195 CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
435 CGAAAAAATTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
13349260 TCGTCTT-CCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
499 TCGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * * *
13349324 AAATGGCATTGGCACATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCAC
563 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CTACCTACCAACCTATCGATCCAC
* * *
13349389 GGCTTGCGCATCCCATCTCTCTTGCCGGCGTAGTGCTCACCCGCCCGCCCGCTCGCTCGCTCGTT
627 GGCTTGCGCATCCCGTCTCTCTGGCCGGCATA--G-T----CGCCCGCCCG--C-C-CGCTCGTT
* * * * * *
13349454 T-AGTCGATTGGCCTGGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGATG
681 TCA-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG-A-CAGATCGAGGGTTG
*** ** * * * * **
13349518 CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCCAATCCCCGACTTGCGCATTTCGCCCC
743 CACCAGCAGGATCGATAGCAAGCAGAGGGGGACCCAACCGAT-CCCGGCTTGCGCATCCCGCCCC
*** * *
13349583 TCTGGCCGGCTGAGCTATCGCATGCTCGTTTCATGGGTTGACTTAGGAATACGAAGTTCATTCCC
807 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC----G-TG-----GG--T--TAA---C-TT---
13349648 AG
851 AG
* *
13349650 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATG
* ** *
13349715 CTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACAATCGCCGGAGCATAATC
61 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---GC-----C
** * * *
13349780 GGAGAACCTGACCGGCGGTATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGA
115 GGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
** * *** *
13349845 TGTGCGATGGGTGCTGGTACTTGGTGC-TTATTTTGCCCCCTATTTGTCATCAAACATCGAGAAC
180 TGTGCGATGGGTGCTGGTACTTGGCCCTTTA-TTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * *
13349909 TCACACTCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTG
244 TCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTG
* *
13349974 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
309 AAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
* * * *
13350039 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCAACCAAGTTTGGGGCCAAAAATCCTTT-CA
374 TTTGTGCATGCCAACAAAAATAC-AGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCG
* *
13350103 AAAAAATTTTAAAAAATCCCAAACC-------G---CAAAAAGC-T------TCG-AAA--A--C
437 AAAAAATTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
13350146 --C-T----TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAGGCCATAAAAA
501 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * ** * * *
13350204 TGGCATTGGCATGCAAAAATATGAAGGTGTGCCTAAACCCCCCTACCACCCTATCTATCCAAGGC
566 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CTACCTACCAACCTATCGATCCACGGC
* * * * * *
13350269 TTGCACATCCCGTCTCTCTAGCCGACGTAGT-GCCCGCCCGCCCACTTGTTTCATCGGTTGGCTT
630 TTGCGCATCCCGTCTCTCTGGCCGGCATAGTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * * * *** * * *
13350333 AGACATACGGAGTTCATTCCCAGTCTAAGGTCGGATCAAATCGAAGGTTGTGGCAGCAAGATTGG
695 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGA-CAGATCGAGGGTTGCACCAGCAGGATCGA
* * * * * * * *
13350398 CAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGAATCCTGCCCCTCTGGCCGGTTGAGC
758 TAGCAAGCAGAGGGGGACCCAACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
13350463 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
822 GCCCGCACGCTCGTTTCGTGGGTTAACTTAG
* *
13350494 GCATACAGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C----A---GACCG-A-
* * * * * * *
13350559 CGAGGTTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGAGG
43 -G-GG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * * * *
13350624 CACCATCGTCGGAGCATCGCTGGAGAACCTGACTGGCTGCATTGGGGTTTCGGCGATTAGGGGGG
105 CACCATCGCCGGAG-AAC-CT---G-ACC-AAC--G--GCATTGGGGTTCCGACGA-TCGGGGGG
* * * * * *
13350689 TCGGGGGGGTGTGCACACATGATGCGCCATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTA
158 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT-TATTGGCCCCCTA
* * *
13350754 TCCCGCATCAAAACTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
222 TCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * **
13350819 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-GAATGGGCACAAAATCTTGTACAC
287 CCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
* * * * * *
13350883 TTCGAGTTTTTAGCTAATTTTTTTTGTGCATGCAAAAAAAAATAGAAGGGTCATGTCTACCAAGT
352 TTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATA-CAGGATCACGTCTACCAAGT
* * * * * *
13350948 TTGGGGCCAAAAATCCTTCCGAAAAAATTTCAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCA
416 TTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
* *
13351013 TGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTGACGTGAAGG-TTAAGGGACCATTGTAT
481 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
13351077 GAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTA
546 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CTACCTA
* * * * * *
13351142 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCTGCGTAGT-GCCCACCCACCCG
610 CCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTCGCCCGCCC-GCC-
* * * * *
13351206 TCAGCCCGATGATTTCATCGATTGGCGTAGGTATACGGAGTTCATTCCAAGTCTAAGATAGGACC
673 -C-GCTC---G-TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATA-GA-C
* *** * * * ** **
13351271 GGA-CTGAGGGTTGCGGTACCAGGATC-AGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGGA
730 AGATC-GAGGGTTGCACCAGCAGGATCGA-TAGCAAGCAGAGGGGGACCCAACCGAT-CCCGGCT
* * * *** * ** * * *** * * * *** *
13351334 TGCAC-GCTCG-TTTTGTGGGTTGACTTAG-GCATACAGAGTTC-ATTC-CCAG-T--C-TAA
792 TGCGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGCA-CGCTCGTTTCGTGGGTTAACTTAG
* * * * *
13351388 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
13351453 CTTGGGCATGTGCTGCTACCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGAATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGA
* ** * * * *
13351518 ACTTGACCGGCGGCATTGGGGTTCTGGCGATC-GAGGGGCCAGGGGGTGTGCGCACATGATGTGC
120 ACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13351582 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTATCCCTCATCAAACCTCAAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTT-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** * *
13351646 C-CCCTTTAAAGAGCATATGAGATTTTATGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
249 CACCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAAT
* * *
13351710 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTG
313 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
* * * * *
13351775 TGCATGCCAACAAAAATACAAGGATAACATCTACCTAGTTTGGGGCCAAAACTCCTT-CTAAAAA
378 TGCATGCCAACAAAAATAC-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
* * * * *
13351839 ATTTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
442 A-TTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
13351904 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAACCCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
13351969 ATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCTTATCGATCCAAGGCTTG
570 ATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CTACCTACCAACC-TATCGATCCACGGCTTG
* * *** * * * *
13352033 CGCATCCCATCTCTCTGGTCGATGTAGT-GCCCGCCCGCCCGCTCATTTCGTCAGTAGGCTTAGG
633 CGCATCCCGTCTCTCTGGCCGGCATAGTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * * *
13352097 CATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCA
698 CATACGGAGTTCATTCCCAGTCTAAGAT-AGA-CAGATCGAGGGTTGCACCAGCA
13352152 CATGCTAGGC
Statistics
Matches: 6737, Mismatches: 1339, Indels: 1334
0.72 0.14 0.14
Matches are distributed among these distances:
811 3 0.00
812 48 0.01
813 3 0.00
814 5 0.00
815 12 0.00
816 39 0.01
817 21 0.00
818 6 0.00
819 3 0.00
820 5 0.00
822 9 0.00
823 4 0.00
824 5 0.00
827 18 0.00
828 13 0.00
829 1 0.00
830 13 0.00
831 5 0.00
832 3 0.00
833 11 0.00
834 15 0.00
835 9 0.00
836 9 0.00
837 8 0.00
838 14 0.00
839 38 0.01
840 6 0.00
841 2 0.00
842 3 0.00
843 5 0.00
844 3 0.00
845 37 0.01
846 142 0.02
847 5 0.00
848 5 0.00
849 5 0.00
850 8 0.00
851 6 0.00
852 1 0.00
853 15 0.00
854 12 0.00
855 13 0.00
856 6 0.00
857 366 0.05
858 52 0.01
859 7 0.00
860 72 0.01
861 7 0.00
862 2 0.00
863 4 0.00
864 9 0.00
865 342 0.05
866 480 0.07
867 191 0.03
868 195 0.03
869 11 0.00
870 9 0.00
871 2 0.00
872 19 0.00
873 20 0.00
874 9 0.00
875 18 0.00
876 7 0.00
877 162 0.02
878 3 0.00
879 11 0.00
880 7 0.00
881 7 0.00
882 15 0.00
883 17 0.00
884 37 0.01
885 74 0.01
886 25 0.00
887 11 0.00
888 10 0.00
889 18 0.00
890 6 0.00
891 8 0.00
892 82 0.01
893 141 0.02
894 62 0.01
895 18 0.00
896 32 0.00
897 377 0.06
898 283 0.04
899 22 0.00
900 99 0.01
901 360 0.05
902 156 0.02
903 611 0.09
904 403 0.06
905 188 0.03
906 347 0.05
907 59 0.01
908 310 0.05
909 10 0.00
910 10 0.00
911 8 0.00
912 16 0.00
913 7 0.00
914 16 0.00
915 12 0.00
916 6 0.00
917 4 0.00
918 16 0.00
919 6 0.00
920 20 0.00
921 12 0.00
922 4 0.00
923 2 0.00
924 1 0.00
925 1 0.00
926 3 0.00
927 24 0.00
928 3 0.00
929 9 0.00
930 4 0.00
931 7 0.00
932 4 0.00
933 3 0.00
934 14 0.00
935 43 0.01
936 17 0.00
937 7 0.00
938 2 0.00
939 68 0.01
940 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (852 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCAAC
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAA
AAATACAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAATCCC
AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACTACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCATAGTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATAGACAGATCGAGGGTTGCACCAGCAGGATCGATAGCAAGCAGAGGGGGACCCAAC
CGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
AACTTAG
Found at i:13347856 original size:26 final size:26
Alignment explanation
Indices: 13347820--13347872 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13347810 GTTGACTTAG
13347820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13347846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13347872 G
1 G
13347873 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13348755 original size:26 final size:26
Alignment explanation
Indices: 13348721--13348773 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13348711 GTTGGCTTAG
13348721 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
13348747 GCATCCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13348773 G
1 G
13348774 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13349410 original size:904 final size:904
Alignment explanation
Indices: 13346188--13352151 Score: 7300
Period size: 865 Copynumber: 6.7 Consensus size: 904
13346178 GGATCACCGA
* * * * *
13346188 AGAACCTGACCGATGACATTGGGGTTCCTGCGATC-GGGGGGCCGGGGGGGTGTCCGCACATGAT
1 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAT
* * *
13346252 GTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
13346317 CACACCTCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAA--G--TG-
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
13346377 --T-------C---TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
13346430 TTTTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCGAA
260 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
13346494 AAAATTTTAGAAAATCCCGAACC-TCAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
325 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
13346558 CTTACCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATG
390 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13346622 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
455 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * * * * *
13346687 CCGCATTTCGTCTCTCTGGCCAGCGTAGTGCTCACCCGCCCACCCACCCACCCGCTTGTTTCG-T
520 GCGCATCCCATCTCTCTGGCCGGCGTA--GC-C-CCCGCCCGCCCGCCCGCCCGCTCGTTT-GAT
* *
13346751 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGA--GTAGACCGAGGGTTGCGA
580 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-AGACCGAGGGTTGCGG
* * * * *
13346814 CAGTAGGATCGGCAGCACACAGAGAGGGACCCGACCAATCCCCAGCTTGCGCATCCTGCCCCTCT
644 CAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCT
* * * * ** * * *
13346879 GGCTGGCTGAGTGCCCGCACACTCATTTCGTGTTTTGACCTAGGCATACGAAGTTCATTACCAGT
709 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * *
13346944 CTAAGCATACGGAGTTCATTCCCAGTGTAGGTTCGGACCAAACTGAGCGTTACGACAGCACATGC
774 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
* * * * *
13347009 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGTACCATCGTCGGAGCATCGTCA
839 TGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCG
13347074 G
904 G
* * * * **
13347075 AGAACCTGATCGACGGCATTGGGGTTCCAGCAATCGGGGGGG-CTAGGGG-GTGCGCACATGATG
1 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
13347138 TGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTT
66 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
13347203 ACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAA
131 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13347268 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTT
196 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * * * *
13347333 T-TGCACATGTGAACAAAAATATAGGGATCACGTCTACCAAGTTTGGGGACAAAACTCTTTCCAA
261 TGTG--CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
13347397 AAAAATTTTCAACAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCG
324 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
13347462 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATGAAAAT
389 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
13347527 GGCATTGGTATGCA-A-AAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGG
454 GGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * ** * * *
13347590 CTTACGCATCTCGTCTCTCTGGCCGGTGTAG----TACCCGTCCGCCCGTCCGTTCGTTTCG-TC
517 CTTGCGCATCCCATCTCTCTGGCCGGCGTAGCCCCCGCCCGCCCGCCCGCCCGCTCGTTT-GATC
* *
13347650 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGAACC-AGACCGAGGGTTGCGGCA
581 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCA
* * * * *** * * * * *
13347714 GC-AGAATCAGCAGTAAGTAGAGGGGGACCCGATTGATCCCCGGCTTGTGCATCCCACCCTTCTA
646 GCAAG-ATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCTG
* * * *
13347778 GCTGGCTAAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
710 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
13347843 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCT
775 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * ** * ** *
13347908 AGGCTCGGGCATGTGCTGGTGCTGCAGTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGG
840 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
* * * * * *
13347973 AGAACCTGACCGACAGCATTGGGGTTTCGGTGATTGGAGGGGCCGGGGGGTGTGCGCGCATGATA
1 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
*
13348038 TGCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT-
66 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13348102 -CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAA
131 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
13348165 ATGGTGACACTTTTTTCAAATGGTCTCAAAATATTGTACACTTCAAGTTTTTAGCTTAATTTATT
196 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TT
* *
13348230 TTGTGCATGCCAACAAAAATACAAGAATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
260 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
13348295 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTTGT
325 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
13348360 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
390 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
13348425 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTT
455 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
13348490 GCACATCCCATCTCTCTGGCCTGCGTAGCCCCCGCCCGTCTGCCCGCCCTCTCGTTTGATCGGTT
520 GCGCATCCCATCTCTCTGGCCGGCGTAGCCCCCGCCCGCCCGCCCGCCCGCTCGTTTGATCGGTT
* * * *
13348555 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGTCCGA-ACAGAGGGTTGTGGCAGCAA
585 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGCAA
* * * *
13348619 GATCGGTAGGACGCAGAGGGGGACCCGACCAATCCCTC-GCTTGCGCATCCCACCCCTTTGGCCG
650 GATCGGCAGCACGCAGAGGGGGACCCGACCAATCCC-CAGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
13348683 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
714 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
13348748 CATCCGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGGC
779 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
13348813 TCGAGCATGTGCTGGTGTCACTTTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGG
844 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
* * * * * *
13348874 AGAGCCTGACCGATGGCATTAGGGTTTCGACGATCGGGGGGGCCGGGGTGGTGCGCGCACATGGT
1 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGG-GGTGTGCGCACATGAT
*
13348939 ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
13349004 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTTTGA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
13349069 AATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
13349134 TTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAA
260 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
13349199 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
325 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
13349264 CTT-CCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
390 CTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
13349328 GGCATTGGCACATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
454 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
13349393 TGCGCATCCCATCTCTCTTGCCGGCGTAGTGCTCACCCGCCCGCCCGCTCGCTCGCTCGTTT-AG
519 TGCGCATCCCATCTCTCTGGCCGGCGTA--GC-C-CCCGCCCGCCCGCCCGCCCGCTCGTTTGA-
* * * * *
13349457 TCGATTGGCCTGGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-AGACCGAGGGATGCGG
579 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGG
* * **
13349521 TAGCAGGATCGGCAGCACGCAGAGGGGGACCC-AGCCAATCCCC-GACTTGCGCATTTCGCCCCT
644 CAGCAAGATCGGCAGCACGCAGAGGGGGACCCGA-CCAATCCCCAG-CTTGCGCATCCCGCCCCT
*** * * * *
13349584 CTGGCCGGCTGAGCTATCGCATGCTCGTTTCATGGGTTGACTTAGGAATACGAAGTTCATTCCCA
707 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
13349649 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
772 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* * **
13349714 GCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACAATCGCCGGAGCATAAT
837 GCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT
13349779 CGG
902 CGG
* * * *
13349782 AGAACCTGACCGGCGGTATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATG
1 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
** * *** *
13349847 TGCGATGGGTGCTGGTACTTGGTGCTTAT-TTTGCCCCCTATTTGTCATCAAACATCGAGAACTC
66 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
13349911 ACACTCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
131 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
13349976 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
196 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
13350041 TGTGCATGCCAACAAAAATACAAGGATCATGTCAACCAAGTTTGGGGCCAAAAATCCTTTCAAAA
261 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * *
13350106 AAATTTTAAAAAA--TC---CC--AAACCG---CAAAAAGC-T------TCG-AAA--A--C--C
326 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
13350147 -T----TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAGGCCATAAAAATGG
391 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
13350207 CATTGGCATGCA-A-AAATATGAAGGTGTGCCTAAACCCCCCTACCACCCTATCTATCCAAGGCT
456 CATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
13350270 TGCACATCCCGTCTCTCTAGCCGACGTA------G--TGCCCGCCCGCCCACTTGTTTCATCGGT
519 TGCGCATCCCATCTCTCTGGCCGGCGTAGCCCCCGCCCGCCCGCCCGCCCGCTCGTTTGATCGGT
* * * * * * *
13350327 TGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGGTCGGATC-AAATCGAAGGTTGTGGCAGCA
584 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGCA
* * * * *
13350391 AGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGAATCCTGCCCCTCTGGCCG
649 AGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
13350456 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAGG
714 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
13350521 CATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCGAGGTTTGTGACAGCACATGCTGGG
779 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
13350585 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCG-CTGG
843 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GG
* * * * * * *
13350647 AGAACCTGACTGGCTGCATTGGGGTTTCGGCGATTAGGGGGGTCGGGGGGGTGTGCACACATGAT
1 AGAACCTGACCGACGGCATTGGGGTTTCGGCGA-TCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * * *
13350712 GCGCCATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCGCATCAAAACTCGAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
13350777 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
13350842 AATGGGGACACTTTTTT-GAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * * * * *
13350905 TTTGTGCATGCAAAAAAAAATAGAAGGGTCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
259 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
13350970 AAAAA-TTTCAAAAATC-CTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
324 AAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
13351033 GTCTTTCCATGAAACTTGACGTGAAGG-TTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAA
388 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** *
13351097 TGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
453 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * * * * *
13351162 TTGCGCATCCCATCTCTCTGGCCTGCGTAGTGCCCACCCACCCGTCAGCCCGAT-GATTTCATCG
518 TTGCGCATCCCATCTCTCTGGCCGGCGTAGCCCCCGCCCGCCCGCCCGCCCGCTCG-TTTGATCG
* * * * * * * *
13351226 ATTGGCGTAGGTATACGGAGTTCATTCCAAGTCTAAGATAGGACCG-GACTGAGGGTTGCGGTAC
582 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAG
* *
13351290 CAGGATCAGCAGCACGCAGAGGGGGACCCG-----------GC---CG-AT-------C-C---C
647 CAAGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGC
* * *
13351329 CGG--GA-----TGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
712 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
13351387 AGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAG
777 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
13351452 GCTTGGGCATGTGCTGCTACCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGAATCATCGG
842 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
* * * *
13351515 AGAACTTGACCGGCGGCATTGGGG-TTCTGGCGATC-GAGGGGCCAGGGGGTGTGCGCACATGAT
1 AGAACCTGACCGACGGCATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
13351578 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTATCCCTCATCAAACCTCAAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * ** *
13351642 CACACCCCTTTAAAGAGCATATGAGATTTTATGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
13351707 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
13351772 TTGTGCATGCCAACAAAAATACAAGGATAACATCTACCTAGTTTGGGGCCAAAACTCCTT-CTAA
260 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
13351836 AAAATTTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
325 AAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
13351901 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAACCCATAAAAAT
389 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
13351966 GGCATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCAAGGCT
454 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * * *
13352031 TGCGCATCCCATCTCTCTGGTCGATGTA------G--TGCCCGCCCGCCCGCTCATTTCG-TCAG
519 TGCGCATCCCATCTCTCTGGCCGGCGTAGCCCCCGCCCGCCCGCCCGCCCGCTCGTTT-GATCGG
* * * *
13352087 TAGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGATC-AGACCGAGGGTTGCAGCAGC
583 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGC
13352151 A
648 A
13352152 CATGCTAGGC
Statistics
Matches: 4401, Mismatches: 557, Indels: 265
0.84 0.11 0.05
Matches are distributed among these distances:
860 69 0.02
864 2 0.00
865 437 0.10
866 306 0.07
867 188 0.04
868 302 0.07
869 2 0.00
870 2 0.00
872 4 0.00
873 2 0.00
875 11 0.00
876 1 0.00
877 134 0.03
878 2 0.00
879 3 0.00
881 1 0.00
882 3 0.00
883 3 0.00
884 1 0.00
885 126 0.03
886 7 0.00
887 35 0.01
888 9 0.00
889 4 0.00
890 3 0.00
892 2 0.00
893 113 0.03
894 17 0.00
895 3 0.00
896 8 0.00
897 363 0.08
898 331 0.08
899 12 0.00
900 75 0.02
901 430 0.10
902 133 0.03
903 9 0.00
904 341 0.08
905 181 0.04
906 335 0.08
907 48 0.01
908 343 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (904 bp):
AGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCATCTCTCTGGCCGGCGTAGCCCCCGCCCGCCCGCCCGCCCGCTCGTTTGATCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGCAAG
ATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
GAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
Found at i:13349661 original size:26 final size:26
Alignment explanation
Indices: 13349631--13349681 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13349621 TGACTTAGGA
*
13349631 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAATCTAAGC
*
13349657 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGAAGTTCATTCCCAATCTAAG
13349682 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGC
Found at i:13350530 original size:26 final size:26
Alignment explanation
Indices: 13350491--13350544 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13350481 TGGGTTGACT
13350491 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
13350517 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
13350543 TA
1 TA
13350545 AGATTGGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:13351398 original size:26 final size:26
Alignment explanation
Indices: 13351362--13351414 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13351352 GTTGACTTAG
*
13351362 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13351388 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13351414 G
1 G
13351415 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13351519 original size:868 final size:867
Alignment explanation
Indices: 13350467--13352050 Score: 2421
Period size: 868 Copynumber: 1.8 Consensus size: 867
13350457 TTGAGCGCCC
* *
13350467 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAGGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * *
13350532 CATTCCCAGTCTAAGATTGGACCGAACCGAGGTTTGTGACAGCACATGCTGGGCTCGAGCATGTG
66 CATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTG
* ** * * *
13350597 CTGGTGTCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACTGGCT
131 CTGCTACCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGAATCGCTGGAGAACCTGACCGGCG
* **
13350662 GCATTGGGGTT-TCGGCGATTAGGGGGGTCGGGGGGGTGTGCACACATGATGCGCCATGGGTGCT
196 GCATTGGGGTTCT-GGCGA-TAGAGGGG-CCAGGGGGTGTGCACACATGATGCGCCATGGGTGCT
*
13350726 GGTACTTGGCCCTTACATTGGCCCCCTATCCCGCATCAAAACTCGAGAACTCACACCCCCTTAAA
258 GGTACTTGGCCCTTACATTGG-CCCCTATCCCGCATCAAAACTCAAGAACTCACACCCCCTTAAA
* *
13350791 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
322 GAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
*
13350856 TTT-GAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTTGTGCATGCAAA
387 TTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCAAA
* * * ** *
13350919 AAAAAATAGAAGGGTCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA-TTTCAAAA
451 AAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAAATCCTT-CGAAAAAATTTTAAAAA
* * *
13350983 ATC-CTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCCATGAAA
515 ATCTC-AAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
* *
13351047 CTTGACGTGAAGG-TTAAGGGACCATTGTATGAATTT-GCAAGCCATAAAAATGGCATTGGCA-T
579 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAG-AACCCATAAAAATGGCATTGGCACT
*
13351109 GCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
643 -CAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCA
13351174 TCTCTCTGGCCTGCGTAGTGCCCACCCACCCGTCAGCCCGATGATTTCATCGATTGGCGTAGGTA
707 TCTCTCTGGCCTGCGTAGTGCCCACCCACCCGTCAGCCCGATGATTTCATCGATTGGCGTAGGTA
13351239 TACGGAGTTCATTCCAAGTCTAAGATAGGACCGGACTGAGGGTTGCGGTACCAGGATCAGCAGCA
772 TACGGAGTTCATTCCAAGTCTAAGATAGGACCGGACTGAGGGTTGCGGTACCAGGATCAGCAGCA
13351304 CGCAGAGGGGGACCCGGCCGATCCCCGGGAT
837 CGCAGAGGGGGACCCGGCCGATCCCCGGGAT
*
13351335 GCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * *
13351400 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGGGCATGTG
66 CATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTG
** * * *
13351465 CTGCTACCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGAATC-ATCGGAGAACTTGACCGGC
131 CTGCTACCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGAATCGCT-GGAGAACCTGACCGGC
* * * *
13351529 GGCATTGGGGTTCTGGCGATCGAGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
195 GGCATTGGGGTTCTGGCGATAGAGGGGCCAGGGGGTGTGCACACATGATGCGCCATGGGTGCTGG
* * * * *
13351594 TACTTGGCCCTTATATTGGCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAG
260 TACTTGGCCCTTACATTGGCCCCTATCCCGCATCAAAACTCAAGAACTCACACCCCCTTAAAGAG
**
13351659 CATATGAGATTTTATGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
325 CATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * * *
13351724 CAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
390 CAAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAA
* * *
13351789 AATACAAGGATAACATCTACCTAGTTTGGGGCCAAAACTCCTTCTAAAAAATTTTTAAAAAATCT
455 AATACAAGGATAACATCTACCAAGTTTGGGGCCAAAAATCCTTCGAAAAAA-TTTTAAAAAATCT
* *
13351854 CGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
519 CAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
*
13351919 CGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAACCCATAAAAATGGCATTGGCACTTAGAAA
584 CGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAACCCATAAAAATGGCATTGGCACTCAGAAA
* *
13351984 TATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCAAGGCTTGCGCATCCCATCTCTCT
649 TATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCATCTCTCT
13352049 GG
714 GG
13352051 TCGATGTAGT
Statistics
Matches: 641, Mismatches: 65, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
865 109 0.17
866 143 0.22
867 85 0.13
868 301 0.47
869 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (867 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTT
CATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTG
CTGCTACCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGAATCGCTGGAGAACCTGACCGGCG
GCATTGGGGTTCTGGCGATAGAGGGGCCAGGGGGTGTGCACACATGATGCGCCATGGGTGCTGGT
ACTTGGCCCTTACATTGGCCCCTATCCCGCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGC
ATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
AAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAA
ATACAAGGATAACATCTACCAAGTTTGGGGCCAAAAATCCTTCGAAAAAATTTTAAAAAATCTCA
AACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTAGAACCCATAAAAATGGCATTGGCACTCAGAAATA
TAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCATCTCTCTGG
CCTGCGTAGTGCCCACCCACCCGTCAGCCCGATGATTTCATCGATTGGCGTAGGTATACGGAGTT
CATTCCAAGTCTAAGATAGGACCGGACTGAGGGTTGCGGTACCAGGATCAGCAGCACGCAGAGGG
GGACCCGGCCGATCCCCGGGAT
Found at i:13352756 original size:708 final size:708
Alignment explanation
Indices: 13351388--13352782 Score: 2269
Period size: 708 Copynumber: 2.0 Consensus size: 708
13351378 CCCAGTCTAA
* *
13351388 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
* *** *
13351453 CTTGGGCATGTGCTGCTACCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGAATCATCGGAGA
66 CTCGGGCATGTGCTGCTACCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAATCATCGGAGA
*
13351518 ACTTGACCGGCGGCATTGGGGTTCTGGCGATCGAGGGGCCAGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGAGGGGCCAGGGGGTGTGCGCACATGATGTGCG
13351583 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATCCCTCATCAAACCTCAAGAACTCACACC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATCCCTCATCAAACCTCAAGAACTCACACC
* **
13351648 CCTTTAAAGAGCATATGAGATTTTATGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
261 CCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* *
13351713 GACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
*
13351778 ATGCCAACAAAAATACAAGGATAACATCTACCTAGTTTGGGGCCAAAACTCCTTCTAAAAAATTT
391 ATGCCAACAAAAATACAAGGATAACATCTACCTAGTTTGGGGCCAAAAATCCTTCTAAAAAATTT
* *
13351843 TTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCC
*
13351908 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAACCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTG
* *
13351973 GCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCAAGGCTTGCGCAT
586 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCAT
* ***
13352038 CCCATCTCTCTGGTCGATGTAGTGCCCGCCCGCCCGCTCATTTCGTCAGTAGGCTTAG
651 CCCATCTCTCTGGCCGACAAAGTGCCCGCCCGCCCGCTCATTTCGTCAGTAGGCTTAG
* * * *
13352096 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
* * * * *
13352161 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGTACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGCTACCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAATCATCGGAGA
13352226 ACCTGACCGGCGGCATTGGGGTTCTGGCGATC-AGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGA-GGGGCCAGGGGGTGTGCGCACATGATGTGC
* *
13352290 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATCCCTCATCAAACCTCGAGAACTCATAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
13352355 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
260 CCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
13352420 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTAAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
* *
13352485 CATGCCAACAAAAATACAAGGATCACGTCTACC-AGGTTTGGGGCCAAAAATCCTTCTGAAAAAA
390 CATGCCAACAAAAATACAAGGATAACATCTACCTA-GTTTGGGGCCAAAAATCCTTCT-AAAAAA
* **
13352549 -TTTTAAAAAATCCCGAACCA-TAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACAAGTCGTCT
453 TTTTTAAAAAATCCCGAA-CAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCT
* *
13352612 TGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGC
*
13352677 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGAT-CAATGGCTTG
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAA-GGCTTG
* *
13352741 CGCATCCCGTCTCTCTGGCCGACAAAGTGCCCGCCCGTCCGC
646 CGCATCCCATCTCTCTGGCCGACAAAGTGCCCGCCCGCCCGC
13352783 CCGCCTGCCT
Statistics
Matches: 633, Mismatches: 49, Indels: 10
0.91 0.07 0.01
Matches are distributed among these distances:
707 5 0.01
708 620 0.98
709 8 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (708 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
CTCGGGCATGTGCTGCTACCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAATCATCGGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGAGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATAACATCTACCTAGTTTGGGGCCAAAAATCCTTCTAAAAAATTT
TTAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCAT
CCCATCTCTCTGGCCGACAAAGTGCCCGCCCGCCCGCTCATTTCGTCAGTAGGCTTAG
Found at i:13353655 original size:26 final size:26
Alignment explanation
Indices: 13353625--13353674 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13353615 GACTTAGGCA
13353625 TACGGAGTTCATTCCCAGTCTAAGTG
1 TACGGAGTTCATTCCCAGTCTAAGTG
13353651 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13353675 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGTG
Found at i:13354512 original size:26 final size:26
Alignment explanation
Indices: 13354483--13354535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13354473 GTTGACTTAG
*
13354483 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13354509 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13354535 G
1 G
13354536 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13356036 original size:438 final size:428
Alignment explanation
Indices: 13355206--13356068 Score: 1084
Period size: 428 Copynumber: 2.0 Consensus size: 428
13355196 ACCACCTGCT
* ** *
13355206 CGTTTCGTCGGTCGGCTTAGGCATACGGATTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGG
1 CGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* * *
13355271 CTACGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCTGACCGATCCCCAGCTTGTACATCCCGC
66 CTACGACAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGC
* * * * *
13355336 CTCTCTGGTCGGCTGAGCGCCCGCATGCTTATTTCATGGGTTAACTTAAGCATACAGAGTTCATT
131 CCCTCTGGCCAGCTGAGCGCCCGCAAGCTCATTTCATGGGTTAACTTAAGCATACAGAGTTCATT
* * **
13355401 CCCAGTCTAAACATATAGAGTTCTAAGATCAGACCGGATCGAGGGTTACGGTAGCACATGCTGGG
196 CCCAATCTAAACATATAGAGTTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * *
13355466 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCACCGAAGCATCGTCGGAGA
261 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCACCGAAGCATCATCGGAGA
* * * * * * *
13355531 ACCTGATCGGTAGCATTGGGGTTCCAATGATCGGGGGGTCGGGGGGGTTGAGCGCACATGTTATG
326 ACATGACCGGGAGCATTGGGGTTCCAACGATCGGGGGGCCGGGGGGGTTGAGCACACATGATATG
13355596 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCA
391 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCA
* * * * **
13355634 CGTTTCGTCGGTTGGCTTCGGCATACGGAGTTCATTCCCAGTTTAAGATCAGATCAGACTGAGGG
1 CGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* * * * * * * * *
13355699 TTGCGATAGCAGGATTGGTAGTACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
66 CTACGACAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGC
* * * *
13355764 CCCTCTGGCCAGCTGAGCGCCCGCAAGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATT
131 CCCTCTGGCCAGCTGAGCGCCCGCAAGCTCATTTCATGGGTTAACTTAAGCATACAGAGTTCATT
* * *
13355829 CCCAATCTAAGCATA-AGAAGTTCATTTCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAG
196 CCCAATCTAAACATATAG-AG------T----TCTAAGATCAGACCGGACCGAGGGTTACGACAG
* * * ** *
13355893 CACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGC
250 CACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCACCGAAGC
* *
13355958 ATCATCGGAGAACATGACCGGCGA-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-TGTG
315 ATCATCGGAGAACATGACCGG-GAGCATTGGGGTTCCAACGATC-GGGGGGCCGGGGGGGTTGAG
13356021 CACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
378 CACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
13356069 CCTATCCCTC
Statistics
Matches: 366, Mismatches: 56, Indels: 16
0.84 0.13 0.04
Matches are distributed among these distances:
427 2 0.01
428 179 0.49
434 1 0.00
438 169 0.46
439 15 0.04
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (428 bp):
CGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
CTACGACAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGC
CCCTCTGGCCAGCTGAGCGCCCGCAAGCTCATTTCATGGGTTAACTTAAGCATACAGAGTTCATT
CCCAATCTAAACATATAGAGTTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCACCGAAGCATCATCGGAGA
ACATGACCGGGAGCATTGGGGTTCCAACGATCGGGGGGCCGGGGGGGTTGAGCACACATGATATG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCA
Found at i:13356435 original size:26 final size:26
Alignment explanation
Indices: 13356405--13356457 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13356395 GTTGACTTAG
13356405 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13356431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13356457 G
1 G
13356458 ATTGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13358220 original size:26 final size:26
Alignment explanation
Indices: 13358183--13358233 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13358173 GTTGACTTAG
13358183 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13358209 GCATACCG-AGTTCATTCCCAGTCTA
1 GCATA-CGAAGTTCATTCCCAGTCTA
13358234 CGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13358629 original size:899 final size:890
Alignment explanation
Indices: 13356220--13358981 Score: 3670
Period size: 899 Copynumber: 3.1 Consensus size: 890
13356210 TTTTAGCTGA
* * * * **
13356220 CCCGCTCACTTCGCCGGTTGGCTTAGGCATACGGAGTTCATTCTCTGTCTAAGATCAGATTGGAC
1 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* * * * * *
13356285 CAAGGGTTACGGCAGCAAGATCGACAGCACGTACAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
66 CGAGGGTTGCGGCAGCAGGATCG-CAGCACGTAGAGGGGGAACCGGTCGATCCCCGGCTTACGCA
* * * * *
13356350 TCCCGCCCCTCTGACCGATTGAGAGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAG
130 TCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAG
* * *
13356415 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGC
194 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * * * * * *
13356480 AACAGCACATGCTGGAATCAGGCATATG-TCGGTGCCATATTTTTCTACGCCGGGGCACCAT--C
259 AGCAGCACATGCTGG-CTCGGGCATGTGCT-GGTGCCACATTTTTCTTCGTCGGGGCACCATCCC
* * *
13356542 --G--TCG-GAGAACCTGACC-AGCGGCATTGGGGTTCTGACGATCGGGGGGGTCGGGGGGTGTG
322 GAGCATCGCGAGAACCTGACCGA-CAGCATTGGGGTTCCGACGATCGGGGGGCTCGGGGGGTGTG
* ** *
13356601 CGCACATGATGTACGATGCATGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
386 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
** *
13356666 CTCGAGAACTCATGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTA
451 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-
* * *
13356731 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTAT
515 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
13356796 CTGAATTTTTTTATGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
580 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
** * * * *
13356861 TCC-TTCCCAAAAAGTTTAAAAAATCCCGAACTGTAAAGAGTTTCAAAAATCATGAAAAATAGAA
645 TCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
13356925 AACGAGTCATCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGC
710 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
13356990 CATAAAAATGTCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGA
775 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
13357055 TCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCACCCG
840 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGCGCTCGCCCGCCCG
* *
13357103 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* * * ** *
13357168 TGAGGGTTGCGGTAGCAGGATCGGCAGCATGCT-GAGGGGG-ACTCGGTCGATCATCGGC-TAGT
66 CGAGGGTTGCGGCAGCAGGATC-GCAGCACG-TAGAGGGGGAAC-CGGTCGATCCCCGGCTTA-C
* * * * *
13357230 GCATCCCGCCCCTTTGGCCGGCTGAGCACCCACACGC-----TCGTGTGTTGACTTAGGCATGC-
127 GCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACG
* * *
13357289 AGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGG
191 A-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
** * *
13357354 TTGTGGCAGCACATGCTTGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
255 TTGCAGCAGCACATGC-TGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * *
13357419 CACCAGAGCATCATCGGAGAACTTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGC-CGGGG
319 C-CC-GAGCATC-GC-GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCTC-GGG
* * *
13357483 GGGTTGTGTGCACATGATGTGTGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
379 GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
13357548 CCTCAAACCTCGAGAACTCGCACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
443 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
13357613 AGCCATTAATGTGTCTGAACTAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGA
508 AGCCATTAA-GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
13357678 GTTTTTAGCTGAAGTTTTCTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
572 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
13357743 GCTAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAA
637 GCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
13357808 AAATAGAAAACGAGTCATCTTGCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGCAT
702 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
13357873 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
767 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
13357938 CCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGCGCTCGCCCGCCCG
832 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGCGCTCGCCCGCCCG
* * * * * * **
13357998 TCAGCTCATTTCGTCGGTTCGCTTAGGGATACGGAGTTCATTCCTAATCTAAGATTGGATCAGAC
1 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* **
13358063 CGAGGGTTGTGGCAATAGGATCTGCAGCACGTAGAGGGGGAACCGG-CTGATCCCCGGCTTACGC
66 CGAGGGTTGCGGCAGCAGGATC-GCAGCACGTAGAGGGGGAACCGGTC-GATCCCCGGCTTACGC
13358127 ATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAA
129 ATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAA
* * *
13358192 GTTCATTCCCAGTCTAAGCATACCGAGTTCATTCCCAGTCTACGATCGGACCGGACCGAAGGTTG
193 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * *
13358257 CAGCAGCATATGCTGGTCTCGGGCATGTGCTGCTGTCACATTTTTCTTCGTCGGGGCACCGTCGC
258 CAGCAGCACATGCTGG-CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-C
* **
13358322 CGGAGCATCGCCGAAAAACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGCTCGGGGGGT
321 C-GAGCATCG-CG-AGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCTCGGGGGGT
* *
13358387 GTGCGCACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCA
383 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
13358452 AAACTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
448 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
13358517 TTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
513 TT-AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
13358582 TAGCTGAATTTTTTTTTGCAAGCCAACATAAATAAAAGGACCACGTCTACCAAGTTTGGGGCCAA
577 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
13358647 AACTCATTCCGAAAAAATTTTAAAAAATCTCGATCCGTAAAAAGTTTCAAAAATCATGAAAAATA
642 AACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
** * *
13358712 GAAAACGAGTTGTTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACA
707 GAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
** **
13358777 AGCCATAAAAATGGCATTGGCACACAG-AATATGAAGATGCACCTAAACCCACCTACCACCCTAT
772 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
13358841 CGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCACGCCCGCCCA
837 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTA--G--CGCTCGCCCGCCCG
* * * * *
13358900 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGGA
1 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGA
* *
13358964 CTGAGGGTTGTGGCAGCA
65 CCGAGGGTTGCGGCAGCA
13358982 CATGCTGGGC
Statistics
Matches: 1629, Mismatches: 201, Indels: 79
0.85 0.11 0.04
Matches are distributed among these distances:
878 124 0.08
879 4 0.00
881 1 0.00
882 2 0.00
883 128 0.08
884 4 0.00
886 2 0.00
888 1 0.00
889 45 0.03
890 239 0.15
891 209 0.13
892 1 0.00
893 1 0.00
894 3 0.00
895 138 0.08
896 4 0.00
898 72 0.04
899 383 0.24
900 187 0.11
901 3 0.00
902 78 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
CGAGGGTTGCGGCAGCAGGATCGCAGCACGTAGAGGGGGAACCGGTCGATCCCCGGCTTACGCAT
CCCGCCCCTCTGGCCGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAG
CAGCACATGCTGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCCCGAGC
ATCGCGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCTCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
CAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGCGTAGCGCTCGCCCGCCCG
Found at i:13359965 original size:717 final size:705
Alignment explanation
Indices: 13358209--13360295 Score: 2799
Period size: 706 Copynumber: 2.9 Consensus size: 705
13358199 CCCAGTCTAA
* * * * * ** * *
13358209 GCATACCGAGTTCATTCCCAGTCTACGATCGGACCGGACCGAAGGTTGCAGCAGCATATGCTGGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * * * *
13358274 CTCGGGCATGTGCTGCTGTCACATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATCGCCGAAAA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCAT---C---GC-T-G--G-AGA
* * * *
13358339 ACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGCTCGGGGGGTGTGCGCACATGATGTGC
120 ACCGGACCAATAGCATTGGGGTTCCGATGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTGC
* * *
13358404 GATGGGTGCTCGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAAACTCGAGAACTCACA
184 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
13358469 CCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATG
*
13358534 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
314 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * * *
13358599 GCAAGCCAACATAAATAAAAGGACCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAA
379 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * * *
13358664 TTTTAAAAAATCTCGATCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTTTTG
444 TTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTG
*
13358729 CCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCAT
509 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** **
13358794 TGGCACACAG-AATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
574 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
13358858 ATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCACGCCCGCCCACCCGCTCGTTTCATCGGTTGGCT
639 ATCCCGTCTCTCTGGCCGACGTAGTG-CCGCACGCCCGCCCACCCGCTCGTTTCATCAGTTGGCT
13358923 TAG
703 TAG
* ** *
13358926 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
13358991 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGACGGGGCACCATCGCTGGAGAACCTGACCAGT
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGCTGGAGAACCGGACCAAT
* * * * * *
13359056 AGCATTGGGGTTCCGACGATCGGGGGGCCAAGTGGGTGTGCGCACATGATGTGTGATGGGTGTTG
131 AGCATTGGGGTTCCGATGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
*
13359121 GTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
13359186 AGCATTTGAGCTTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGCCTGAAATGGGGACACTTTT
260 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTT
* * * *
13359251 TTCAAATGGCCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
325 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC-AAC
** * * * * *
13359316 AAAAATGCAAGGATCATGTTTACCAGGTTAGGGG-AAAAACTCCTTTCGAAAAAATTTTTAAAAA
389 AAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAA
* * * * *
13359380 TCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTTTTGCCATGAAACA
454 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACT
**
13359445 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
519 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
13359510 AAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTAACCCGTCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * **
13359575 TCTGGCCGATGTAGTG-C-C-CGCCCGCCCGCCCGTTCGTTTTGTCAGTTGGCTTAG
649 TCTGGCCGACGTAGTGCCGCACGCCCGCCCACCCGCTCGTTTCATCAGTTGGCTTAG
** *
13359629 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTTGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
13359694 CTCGAGCATGTGCTGGTGCCGTA-TTTTCTTC-ATCGGGGCACCATCGGCATTGGGGGAGCGGGG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGA-CGGGGCACCATC-GC--T-GGAGAAC----
* *
13359757 GGGTATGCGCACATGATGCATTGGGGTTCCGATGATCGGGGGAGCCGGGGGGTATGCGCACATGA
122 CGG-A--C-CA-AT-A-GCATTGGGGTTCCGATGATCGGGGG-GCCGGGGGGTGTGCGCACATGA
* *
13359822 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAAAAC
179 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
13359887 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGCCTA
244 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTG
13359952 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTG-ATTTT
309 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
13360015 TTTCATGCATGCCAACAAGAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
374 TTT-ATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
13360080 AAAAAA-TTTTATAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
438 AAAAAATTTTTA-AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * ** *
13360144 CGTCTTGCCATGCAACTTCACATGAAGGCTTAAGCTACCATTATATGAATTTACAAGCCATAAAA
502 CGTTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
13360209 ATTGCATTGGCGTGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
567 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
13360274 CTTGCGCATCCCGTCTCTCTGG
632 CTTGCGCATCCCGTCTCTCTGG
13360296 ACCAAGGGTT
Statistics
Matches: 1207, Mismatches: 140, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
701 1 0.00
702 20 0.02
703 111 0.09
704 1 0.00
705 3 0.00
706 391 0.32
707 101 0.08
709 1 0.00
710 2 0.00
711 3 0.00
713 1 0.00
714 3 0.00
715 43 0.04
716 222 0.18
717 301 0.25
718 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGCTGGAGAACCGGACCAAT
AGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
AAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGACGTAGTGCCGCACGCCCGCCCACCCGCTCGTTTCATCAGTTGGCTTAG
Found at i:13361976 original size:26 final size:26
Alignment explanation
Indices: 13361940--13361992 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13361930 GTTGACTTAG
*
13361940 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13361966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13361992 G
1 G
13361993 ATCGCATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13362872 original size:26 final size:26
Alignment explanation
Indices: 13362835--13362887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13362825 GTTGACTTAG
13362835 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13362861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13362887 G
1 G
13362888 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13363480 original size:903 final size:888
Alignment explanation
Indices: 13361638--13363604 Score: 2842
Period size: 903 Copynumber: 2.2 Consensus size: 888
13361628 GACCATAACT
* * * * *
13361638 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCCTAGACACATCTACCACCCTATCGA
1 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
13361703 TCCACGGCATGCACATCCCGTCTCTCGGGCCGGCGTAGTGCCCGCCCGCCCG-TTCGCTCGTTTC
66 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTT-GCTCATTTC
* * * * *
13361767 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATCAGACTAGATCGAGGGTTGCCG
130 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGATCGAGGGTTACCG
* ** * * **
13361832 CAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTTCGCATCCTGTCCCTCT
195 CAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCATCCCTCT
* * *
13361897 GGCCGGCTGAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
260 GGCCGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
*
13361962 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCATCGGACCGAGGGTTGCGGCAGCACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCATCAGACCGAGGGTTGCGGCAGCACATGC
* * * *
13362027 TGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCAGAGAACCGACT
390 TGGACTCAGGCATCTGCTGGTGCCACATTTTTCTTCCTCGGGACACCATCGCCAGAGAACCGACT
* * * *
13362092 GGCGGCATTGGGGTTCCGGCAATCGGGGGGGTCAGGTGGGCGGTGTCCGGACATGATGTACAATG
455 GGCGGCATTGGGGTTCCGGCAATCGGGGGAGCCA---GGGAGGTGTCCGCACATGATGTACAATG
* *
13362157 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAATTCACACCCC
517 GGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCACCAAACCTCGAGAACTCACACCCC
*
13362222 CTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
582 CTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
*
13362287 CACTTATTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
647 CACTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
* * *
13362352 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
712 CCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * *
13362417 AAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAATTAGAGAACGAGTCGTCTTGCCAT
777 AAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCAT
*
13362482 GAAACTTAACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGC
842 GAAACTTAACGTGAAGGCTTAAAGGACCAATGTATGAATTTACAAGC
* * * *
13362529 CATAAAAATGTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATTGA
1 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
13362594 TCCATGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTTGCTCAT
66 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCTTGCTCAT
* * *
13362659 TTCGTCGGTTGGCTTAGGCATACAGTGTTCATTCCCAGTCTAAGATCGGACCGA-ATCGAGGGTT
127 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGATCGAGGGTT
* * * * *
13362723 ACGGCAGCAGGATCGGCAGCCCACAGAGGGGGACCCGATCTATCCCTGGCTTGCGCATCCCATCT
191 ACCGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCATCC
* ** *
13362788 CTCTGGCCGACTGAGTGCCTA-CTTGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
256 CTCTGGCCGACTGAGCGCC-AGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
*
13362852 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTAGACCGAGGGTTGCGGCAGC
320 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCATC-AGACCGAGGGTTGCGGCAGC
**
13362916 ACATGCTGGACTCAGGCATCTGCTGGTGCTGCATTTTTCTTCACT-GAGGCACCATCACTGGAGC
384 ACATGCTGGACTCAGGCATCTGCTGGTGCCACATTTTTCTTC-CTCG-GG----A-CAC-----C
* *
13362980 ATCGCCAGAGAACCTGA-TCGGCGGCATTGGGGTTCCGGCCATCGGGGGAGCCA-GGAGGTGTGC
437 ATCGCCAGAGAACC-GACT-GGCGGCATTGGGGTTCCGGCAATCGGGGGAGCCAGGGAGGTGTCC
* * *
13363043 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACC
500 GCACATGATGTACAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCACCAAACC
*
13363108 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
565 TCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
13363173 AGTGTCTAAAATGGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
630 AGTGTCTAAAATGGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
13363238 TGAATTTTTTTGTGCATCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGTCCAAAACT
695 TGAATTGTTTTGTGCATCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACT
* * * **
13363303 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTTGAAAATCATG-AAATATAGAA
760 CCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAT-TAGAA
** * *
13363367 AACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGG
824 AACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAAGGACCAATGTATGAATTTACAAGC
13363432 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
1 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
13363497 TCCTTGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-AGCTCATTTCG
66 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGCTCATTTCG
*
13363558 TCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
13363605 TAGACCAAGG
Statistics
Matches: 958, Mismatches: 95, Indels: 43
0.87 0.09 0.04
Matches are distributed among these distances:
891 90 0.09
894 2 0.00
895 329 0.34
896 9 0.01
897 1 0.00
899 8 0.01
900 1 0.00
901 3 0.00
902 4 0.00
903 463 0.48
906 15 0.02
907 33 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (888 bp):
CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGCTCATTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGATCGAGGGTTACCGC
AGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCATCCCTCTG
GCCGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCATCAGACCGAGGGTTGCGGCAGCACATGCT
GGACTCAGGCATCTGCTGGTGCCACATTTTTCTTCCTCGGGACACCATCGCCAGAGAACCGACTG
GCGGCATTGGGGTTCCGGCAATCGGGGGAGCCAGGGAGGTGTCCGCACATGATGTACAATGGGTG
CTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
TATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATCCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCATGAAA
CTTAACGTGAAGGCTTAAAGGACCAATGTATGAATTTACAAGC
Found at i:13366443 original size:660 final size:661
Alignment explanation
Indices: 13365175--13366492 Score: 1987
Period size: 660 Copynumber: 2.0 Consensus size: 661
13365165 CTTAGGCATA
* * *
13365175 CGGAGTCCATTCCCAGTCTAAAATTGGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA
1 CGGAGTCCATTCCCAGTCTAAAATCGGATCAGACAGAGGGTTACGGCAGCACATGCTGAGCTCGA
* ** * *
13365240 GCATGTGCTGGTGTCGTATTTTTCTTCGCCGGGGCACCATCACCTGAGCATCGCCGGAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTG
*
13365305 ACCAGCAGCATTGGGGTTCCGACAATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTACGATGG
131 ACCAGCAGCATTGGGGTTCCGACAATCGGGGGGCCCAGGGGGTGTGCGCACATGATGTACGATGG
* *
13365370 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
196 GTGCTGGTACTTGGCCCTTATATCGACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* ** *
13365435 TTAAAGAGTATTTGAGATTTTACGGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAATGGAGAC
261 TTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGACATTAAAGTGTCTGAAATGGAGAC
* ** * *
13365500 ACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTGTGTGCATG
326 AATTTTTTCAAATAGTCACAAAATCTCATACACTTCGAGTCTTCAGCTGATTTTTTGTGTGCATG
*
13365565 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTACTTCCGAAAAAATATAA
391 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATATAA
*
13365630 AAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
456 AAAAATCCCGAACAGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
* * * *
13365695 AAACTTTACATGAAGGCTTTGGGGACCATTGTATGAATTTACAAGCCGTTAAAATGGCATTGGCA
521 AAACTTCACATGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
13365760 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
586 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
13365825 GTCTCTCTCGT
651 GTCTCTCTCGT
* * * *
13365836 CGGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTACGGCAGCACATGCTGAGCTCGG
1 CGGAGTCCATTCCCAGTCTAAAATCGGATCAGACAGAGGGTTACGGCAGCACATGCTGAGCTCGA
* **
13365901 GCATGTGCTGGTGCCACATTTTTCTTCACCGGTGCACCATCGTCGGAGCATCGCCGGAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTG
* * * *
13365966 ACC-GACAGCATTGGGGTTCCGACGATC-GGGGGCCCGGGGGGTGTGTGCACATGATGTGCGATG
131 ACCAG-CAGCATTGGGGTTCCGACAATCGGGGGGCCCAGGGGGTGTGCGCACATGATGTACGATG
* **
13366029 GGTGCTGGTACTTGGCCTTTATATCGACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATCGACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* *
13366094 CTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGACATTAAAGTGTCTGAAATGGAGA
* * *
13366159 CAATTTTTTCAAATGGTCACAAAATCTCATACACTTTGAGTCTTCAGCTGAATTTTTT-TTTGCA
325 CAATTTTTTCAAATAGTCACAAAATCTCATACACTTCGAGTCTTCAGCTG-ATTTTTTGTGTGCA
* * *
13366223 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CATTTCGAAAAGATT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAC-TTCCGAAAAAATA
* * ** * * ** * *
13366287 TTAGAAAATCTTGAACCGTAACGAGTTTAAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCC
453 TAAAAAAATCCCGAACAGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
*
13366352 ATGAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACATGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
13366417 GCATGCGGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCGCAT
583 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
13366482 CTCGTCTCTCT
648 CCCGTCTCTCT
13366493 GGCCGACGTA
Statistics
Matches: 588, Mismatches: 66, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
659 1 0.00
660 441 0.75
661 146 0.25
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (661 bp):
CGGAGTCCATTCCCAGTCTAAAATCGGATCAGACAGAGGGTTACGGCAGCACATGCTGAGCTCGA
GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTG
ACCAGCAGCATTGGGGTTCCGACAATCGGGGGGCCCAGGGGGTGTGCGCACATGATGTACGATGG
GTGCTGGTACTTGGCCCTTATATCGACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGACATTAAAGTGTCTGAAATGGAGAC
AATTTTTTCAAATAGTCACAAAATCTCATACACTTCGAGTCTTCAGCTGATTTTTTGTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATATAA
AAAAATCCCGAACAGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
AAACTTCACATGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTCGT
Found at i:13366747 original size:26 final size:26
Alignment explanation
Indices: 13366699--13366749 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13366689 TTTGACTTAG
**
13366699 GCATACGAAGTTCATTCTTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13366725 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
13366750 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13367641 original size:26 final size:26
Alignment explanation
Indices: 13367605--13367657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13367595 GTTGACTTAG
13367605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13367631 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13367657 G
1 G
13367658 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13368282 original size:904 final size:891
Alignment explanation
Indices: 13365837--13369277 Score: 4532
Period size: 856 Copynumber: 3.9 Consensus size: 891
13365827 CTCTCTCGTC
* * * * *
13365837 GGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CAGAGGGTTACGGCAGCACATGCTGAGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA-AGGGTTGCGACAGCACATGCTGGGCTCGG
** * *
13365901 GCATGTGCTGGTGCCACATTTTTCTTCACCGGTGCACCATCGTCGGAGCATCGCCGGAGAACCTG
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
* * * * * *
13365966 ACCGACAGCATTGGGGTTCCGACGATCGGGGGCCCGGGGGGTGTGTGCACATGATGTGCGATGGG
130 ACCGACGGCATTGGGGTTCTGGCAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
13366031 TGCTGGTACTTGGCCTTTATATCGACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* *
13366096 TAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* ** * * *
13366161 ATTTTTTCAAATGGTCACAAAATCTCATACACTTTGAGTCTTCAGCTGAATTTTTTTT-TGCATG
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTGTGCATG
* * * * *
13366225 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTTCGAAAAGATTTTA
389 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* ** * * *
13366290 GAAAATCT-TGAACCGTAACGAGTTTAAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCAT
454 AAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
13366354 GAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * * *
13366419 ATGCGGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCGCATCT
584 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
13366484 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
649 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * * * * *
13366549 GTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGTAGGATTGACAACACGCAAA
714 GTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATAGGCAGCACGCAGA
* *
13366614 GGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGTGCCCGCACGCT
779 GGGGGACCCGATTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGCT
*
13366679 CATTTCGTGGTTTGACTTAGGCATACGAAGTTCATTCTTAGTCTAAGCATA
844 CATTTCGTGGGTTGACTTAGGCATACG-AGTTCATTC--AGTCTAAGCATA
* * * * ** *
13366730 CGAAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGA
1 -GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGG
* ***
13366795 GCATGTGCTGGTACCACATTTTTCTTCGTCGGGGCACCATTACCGGAGCATCACCGGAGAACCTG
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
* ** *
13366860 ACCGACGGCGTTGGGGTTCTATCAATCGGGGGGGCCGGGGGGGTGTGCCCACATGATGTGCGATG
130 ACCGACGGCATTGGGGTTCTGGCAATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* * *
13366925 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCC
193 GGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
* * *
13366990 CTTAACGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
13367055 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGA-TTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAT
* * *
13367119 GCCAAAAAAAATACAAGGATCATGTTTACCAAGTTT-GGGCTCGAAACTCCTTCCAAAAAAATTT
388 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCAAAAAAATTT
* * *
13367183 TAAAAAATC-CTGAACCGCAATACGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
452 TAAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
13367247 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** *
13367312 GCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
582 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
13367377 CCCGTCTCTCTGGCTGACGTAGTGCTCGCCCGCTGCCCGCCTGCCCGCTCGTTTCATCGGTTGGC
647 CCCGTCTCTCTGGCCGACGTA--G-T-G-CC-C-G--C-CC-GCCCGCTCGTTTCATCGGTTGGC
** *
13367442 TTAGGCATAAAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGTAGGATA
701 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATA
* * * * *
13367507 GGTAGCACGTAGAGTGGGACCCGGTTGATCCCCGGCTTGCGCAT-CTCGCCCCTCTGGCCGACTG
766 GGCAGCACGCAGAGGGGGACCCGATTGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTG
** * *
13367571 AACGCCTAG-ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
830 AGTGCC-CGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTCATT--CAGTCTAAGCAT
13367635 A
891 A
* * *
13367636 TGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCAAGGGTTGCGACAGCACATGTTGGGCTTGG
1 -GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGG
* *
13367701 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTG
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
* *
13367766 ACCGACGGCATTGGGGTTCTGGCAATCGGGGGAGCCGGGGGGTGTGCGCACATGATGTACGGTGG
130 ACCGACGGCATTGGGGTTCTGGCAATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
13367831 GAGCTGGTACGTGGCCTTTATATT-ACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTC
194 GTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * **
13367895 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTATCCATTAAAGTGT-TAGAAATAAGGA
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGA
* *
13367959 CACTTTTTTCGAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAT
* * *
13368024 GCTAACAAAAGTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTT
388 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* *
13368088 AAAAAATCTCT-AACCGTAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCA
453 AAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
13368152 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
13368217 CACATAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCATGACTTGCGCATC
583 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
13368282 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGACTTAGGCATACGG
648 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
** * * * * *
13368347 AGTTCATTCCTAGTCTAAGATTGGACTGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCTCGCAG
713 AGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATAGGCAGCACGCAG
* * * * *
13368412 AGGGGGTCCAGATCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCTGGCTGAGTGCCCGCACGC
778 AGGGGGACCCGATTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGC
**
13368477 TTGTTTCGTGGGTTGACTTAGGCATAC--G---A---AGT-T---C---
843 TCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCAGTCTAAGCATA
* * *
13368511 --A-TTC---CCC-GTCTAAGATCGGATCAGACCGAGGGTTGC-AGCAGCACATGCTGGGCGCGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGA-CAGCACATGCTGGGCTCGG
* * *
13368568 GCATGTGCTGGTGCCGCATTTTTCTTC-ACTAGGGCACCATCGT-------T----GGAGAACCT
65 GCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACCT
** ** * * *
13368621 GACCGGTGGCATTGGGGTTCTGGTGATCGGGGGGCCGGGGGGTATGCGCATATGTTGTGCGATGG
129 GACCGACGGCATTGGGGTTCTGGCAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
13368686 GTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAAACTTGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * *
13368751 TTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCTATTAATGTGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
** *
13368816 ACTTTTTTCAAATTATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTCTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATG
* *
13368881 CCAACAAAAATACAAGGATCATGTCTATCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTA
389 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * * * *
13368946 AAAAAT-TC-AAACCGTAAAAAGTTTTAAAAATCGTAAAAAATAGAAAACAAGTCGTCTTGCCAT
454 AAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
13369009 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGGCATAAAAATGGAATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
13369074 ACACAAAAATATGAAGATGTGCCAAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCC
584 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * *
13369139 CGTCTCTCTGACCGACGTAGTGCCCGCCTGTTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGA
649 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * * * * * *
13369204 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGACAGTAGGATCGACAGCATGTAGA
714 GTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATAGGCAGCACGCAGA
*
13369269 GGGGAACCC
779 GGGGGACCC
13369278 AGCCGACCCC
Statistics
Matches: 2254, Mismatches: 258, Indels: 108
0.86 0.10 0.04
Matches are distributed among these distances:
855 47 0.02
856 531 0.24
857 11 0.00
860 1 0.00
866 2 0.00
867 81 0.04
868 3 0.00
871 3 0.00
872 1 0.00
878 1 0.00
881 1 0.00
882 3 0.00
887 1 0.00
890 1 0.00
892 1 0.00
893 159 0.07
894 147 0.07
895 264 0.12
896 189 0.08
897 2 0.00
898 2 0.00
899 3 0.00
900 3 0.00
901 2 0.00
902 2 0.00
903 1 0.00
904 340 0.15
905 121 0.05
906 328 0.15
907 2 0.00
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
CCGACGGCATTGGGGTTCTGGCAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCC
AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
AAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATAGGCAGCACGCAGAGG
GGGACCCGATTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCA
TTTCGTGGGTTGACTTAGGCATACGAGTTCATTCAGTCTAAGCATA
Found at i:13372640 original size:20 final size:20
Alignment explanation
Indices: 13372615--13372652 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13372605 TTGAAAGTAA
13372615 GAAGCT-AAGCGAAGCTGAGC
1 GAAGCTGAA-CGAAGCTGAGC
13372635 GAAGCTGAACGAAGCTGA
1 GAAGCTGAACGAAGCTGA
13372653 AAGGAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.37, C:0.18, G:0.34, T:0.11
Consensus pattern (20 bp):
GAAGCTGAACGAAGCTGAGC
Found at i:13372651 original size:10 final size:10
Alignment explanation
Indices: 13372615--13372653 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
13372605 TTGAAAGTAA
13372615 GAAGCT-AAGC
1 GAAGCTGAA-C
*
13372625 GAAGCTGAGC
1 GAAGCTGAAC
13372635 GAAGCTGAAC
1 GAAGCTGAAC
13372645 GAAGCTGAA
1 GAAGCTGAA
13372654 AGGAAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 25 0.96
11 1 0.04
ACGTcount: A:0.38, C:0.18, G:0.33, T:0.10
Consensus pattern (10 bp):
GAAGCTGAAC
Found at i:13375094 original size:26 final size:26
Alignment explanation
Indices: 13375058--13375136 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
13375048 GTTGACTTAG
*
13375058 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13375084 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13375110 GCAGACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13375136 G
1 G
13375137 ATCGGATCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13376008 original size:26 final size:26
Alignment explanation
Indices: 13375978--13376030 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13375968 GTTGACTTAG
*
13375978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13376004 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13376030 G
1 G
13376031 ATCGCACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13377377 original size:709 final size:714
Alignment explanation
Indices: 13376004--13377477 Score: 2124
Period size: 709 Copynumber: 2.1 Consensus size: 714
13375994 CCCAGTCTAA
* * *
13376004 GCATACGGAGTTCATTCCCAATCTAAGATCGCACCGGACCAAGGGTTGCGATAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGCG
* * *
13376069 CTCGGGCACGTGCTGGTGCCATATTTTTCTTCGCCGGAGCACCATTTCCGAAGCATCGCTAAAGA
65 CTCAGGCACGTGCTGGTGCCACATTTTTCTTCGCCGGAGCACCATGTCCGAAGCATCGCTAAAGA
* * **
13376134 ACCTGACCGACAGCATTGGGGTTCCGACGATCGTGAGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACAGCATCGGGGTTCCGACGATCGGGAGGGCCGGGGGGGCATGCGCACATGATGTG
*
13376199 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCAC
* *
13376264 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAA
* * * *
13376329 TGGGGACACCTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTT
325 TGGGGACACCTTTTTCAAATAGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAAATTTTTT
* * *
13376394 ATGCGTGACAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAA
390 ATGCGTGACAAAAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
13376459 AATTTTAAAAAATATCGAACCGTAAAAAGGATCTGAAATCGTGAAAAATAAAAAACGAGTCGTCT
455 AATTTTAAAAAATACCGAACCGTAAAAAGGATCTAAAATCCTAAAAAATAAAAAACGAGTCGTCC
*
13376524 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGC
* *
13376589 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGC
585 ATTGGCATACAGAAATATGAAGATGTGCCAAAACCCACCTACCAACCTATCGATCCACGGCTTGC
* * *
13376654 ACATCCTATCTCTCTGGCCGG-GTAGTG-C-CCGC-CCGCCCGCTCGTTTCGTCGGTTCGCTTAG
650 ACATCCCATCTCTCTGGCCGGCATAGTGCCACCCCACCGCCCGCTCGTTTCGTCGGTTCGCTTAG
* * * *
13376715 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGCG
* * * * * * **
13376780 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGT-CGGAGCATCG-TCGGA
65 CTCAGGCACGTGCTGGTGCCACATTTTTCTTCGCCGGAGCACCAT-GTCCGAAGCATCGCT-AAA
* * *
13376843 GAACCTGACCGACGGCATCGGGGTTCCGACGGTCGGGGGGGCC-GGGGGGCATG-GCACATGATG
128 GAACCTGACCGACAGCATCGGGGTTCCGACGATCGGGAGGGCCGGGGGGGCATGCGCACATGATG
**
13376906 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTC
13376971 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-A
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13377035 AATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTT
323 AATGGGGACACCTTTTTCAAATAGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAAATTTT
* * *
13377100 TTGT-CGATGCCAACAAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTTCG
388 TTATGCG-TGACAA-AAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCCG
* * * * *
13377164 AAAAAATTTTAAAAAATCCCGAACCG-CAAAAGGTTTTAAAAATCCTAAAAAATAGAAAACGAGT
451 AAAAAATTTTAAAAAATACCGAACCGTAAAAAGGATCT-AAAATCCTAAAAAATAAAAAACGAGT
* **
13377228 CGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGATGTAAAA
515 CGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAA
* * *
13377293 ATGGCTTTGGCGTACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGG
580 ATGGCATTGGCATACAGAAATATGAAGATGTGCCAAAACCCACCTACCAACCTATCGATCCACGG
* * *
13377358 CTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCACCCCATCCGCCCGCTCGTTTCGTCGGTT
645 CTTGCACATCCCATCTCTCTGGCCGGCATAGTG-CCACCCCA-CCGCCCGCTCGTTTCGTCGGTT
*
13377423 GGCTTAG
708 CGCTTAG
* * * * *
13377430 GCATACGGAGCTCATTCCTACTCTAAGATCAGACCGAACTGAGGGTTG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCG-ACCGAGGGTTG
13377478 TGATAGCAAG
Statistics
Matches: 676, Mismatches: 75, Indels: 20
0.88 0.10 0.03
Matches are distributed among these distances:
707 2 0.00
708 76 0.11
709 367 0.54
710 14 0.02
711 143 0.21
712 2 0.00
713 3 0.00
714 1 0.00
715 68 0.10
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (714 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGACCGAGGGTTGCGACAGCACATGCTGCGC
TCAGGCACGTGCTGGTGCCACATTTTTCTTCGCCGGAGCACCATGTCCGAAGCATCGCTAAAGAA
CCTGACCGACAGCATCGGGGTTCCGACGATCGGGAGGGCCGGGGGGGCATGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAT
GGGGACACCTTTTTCAAATAGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAAATTTTTTA
TGCGTGACAAAAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATACCGAACCGTAAAAAGGATCTAAAATCCTAAAAAATAAAAAACGAGTCGTCCT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCA
TTGGCATACAGAAATATGAAGATGTGCCAAAACCCACCTACCAACCTATCGATCCACGGCTTGCA
CATCCCATCTCTCTGGCCGGCATAGTGCCACCCCACCGCCCGCTCGTTTCGTCGGTTCGCTTAG
Found at i:13378895 original size:873 final size:872
Alignment explanation
Indices: 13376683--13379240 Score: 3529
Period size: 873 Copynumber: 2.9 Consensus size: 872
13376673 GGGTAGTGCC
* *
13376683 CGCCCGCCCGCTCGTTTCGTCGGTTCG-CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGG
1 CGCCCGCACGCTCGTTTCGTGGGTT-GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGG
* ** *
13376747 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
65 ACCAAAATGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTTC
* * * *
13376812 GTCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATCGGGGTTCCGACGGTC
130 GTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
* **
13376877 GGGGGGGCCGGGGGGCATG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
195 GGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
13376941 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
260 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
13377006 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTT
325 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* **
13377071 GTACACTTCAAGTTTTTAGCTGA-AATT-TTTTGTCGATGCCAACAAAAAATACAAGGATCACGT
390 GTACACTTCGAGTTTTTAGCTGATTTTTGTTTTG-C-ATGCCAA-AAAAAATACAAGGATCACGT
* * * * *
13377134 CTACCAAGATTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAGGTT
452 CTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
* * *
13377199 TTAAAAATCCTAAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGG
517 TCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *** * * * *
13377264 ACCATTGTATGAATTTTCAAGATGTAAAAATGGCTTTGGCGTACAGAAATATGAAGATGTGCCAA
582 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTA
13377329 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-TCGGCATAGTGCC
647 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCATAGTGCC
* * * * *
13377393 CACCCCATCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCTACTCTAAGA
711 CGCCGC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA
* * * *
13377458 TCAGACCGAACTGAGGGTTGTGATAGCAAGATTGGTAGCACACAGAGGGGGACCCGACCGATCCC
774 TCAGACCGAACCGAGGGTTGAGATAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCC
*
13377523 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
839 CGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
* * *
13377557 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAGACAGAGTGCATT-CCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG---ATC
* ** *
13377621 GAGTTCATTCCCCATATAAGAATGAACCGGACCAAGGGTTACGATAGCAGATGCTGGGCTCAGGC
63 G-G---A----CC----AA-AAT------G----AGGGTTGCGGCAGCACATGCTGGGCTCAGGC
** **
13377686 ATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCAAA
105 ATGTGCTGGTGCC-TCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * *
13377750 CCGGCGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATG
169 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--AGGGGGTGTGCGCACATGATGTGCGATG
* * * *
13377815 GGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCACGAGAACTCATACCCC
232 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
13377880 CTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
297 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
13377945 CACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAGTTTTTAGCTGAATTTTTG-TGTGCA
362 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTGTTTTGCA
* * *
13378009 TGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCATTCCGAAAAAATTT
426 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTT
* *
13378074 TAAAAAATCTCGAACCGCAAAAAGTTTCCAAAATCATAAAAAATAGAAAAGGAGTCGTCTTGCCA
491 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCA
*
13378139 TGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
556 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
13378204 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
621 CATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
13378269 CCGTCTCTCTGGCTGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
686 CCGTCTCTCTGGCTGGCATAGTGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
13378334 ACAGAGTTCATTCCCATTCTAAGATCGGACC-AGACCGAGGGTTGCAG-TAGCAGGATCGGCAGC
750 ACGGAGTTCATTCCCAATCTAAGATCAGACCGA-ACCGAGGGTTG-AGATAGCAAGATCGGCAGC
* * *
13378397 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTTTGGCCAGCTGAG
813 ACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
* * * *
13378457 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTTTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
13378522 CCAAAATGAGGGTTGTGGCAGCACATGCTAGGCTCGGGTATGTGCTGGTGCCTCATTTTTCTTCG
66 CCAAAATGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTTCG
**
13378587 -CTGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT-
131 TC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
* * * * *
13378650 TGGGGGGCCAGGGAGGTGTGCACACATGATTTGCGATGGGTGCTGGAACTTGGCCCTTATATTAG
195 GGGGGGGCCAGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
13378715 CCCCCTATCCCTCATCAATCCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAAG
259 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
13378780 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAGATTT
324 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
13378845 TGTACACTTCGATTTTTTAGCTGATTTTTGTTTTGCATACCAATAAAAATACAGGGATCACGTCT
389 TGTACACTTCGAGTTTTTAGCTGATTTTTGTTTTGCATGCCAAAAAAAATACAAGGATCACGTCT
* *
13378910 ACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTC
454 ACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
* *
13378975 AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
519 AAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
13379040 CATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
584 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAA
* * * * * ** *
13379105 CCGACGTACCACCCTATCGATCCACGGCTTGTGTATCCCGTCTCTCTGGCCGGCGGAATGCCCGC
649 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCG-
* *
13379170 CCGCCCGCCCACCCGCTCGTTTCGTTGGTTGGCTAAGGCATACGGAGTTCATTCCCAATCTAAGA
713 CCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA
13379235 TCAGAC
774 TCAGAC
13379241 TGGACCAAGG
Statistics
Matches: 1487, Mismatches: 149, Indels: 93
0.86 0.09 0.05
Matches are distributed among these distances:
872 11 0.01
873 474 0.32
874 54 0.04
875 99 0.07
876 3 0.00
877 55 0.04
879 1 0.00
880 1 0.00
884 2 0.00
885 3 0.00
886 2 0.00
888 1 0.00
889 1 0.00
890 2 0.00
894 1 0.00
895 1 0.00
897 1 0.00
898 3 0.00
899 114 0.08
900 181 0.12
901 273 0.18
902 197 0.13
903 2 0.00
904 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
CCAAAATGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTTCG
TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
GGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGATTTTTGTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
AAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCG
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
GAACCGAGGGTTGAGATAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCAGCTGAG
Found at i:13382665 original size:718 final size:711
Alignment explanation
Indices: 13379808--13382978 Score: 4271
Period size: 719 Copynumber: 4.4 Consensus size: 711
13379798 CCAGGTTTAA
* * * * *
13379808 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGATCCGTAAAAGGTTTCAAAAATCGTAA
1 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTTAAAAATCGTGA
* *
13379873 AAAATAGAAAACGAGTCGTCTTGCCAAGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
65 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * **
13379938 TTTACAAGCCATAAAAATGGCATTGGAATGCATAAATATGGAGATGTGCCTAAACTTACCTACCA
130 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * * * *
13380003 CCCTTTCGATCCATGACTTGCGTAACCCGTCTTTCTAACTGGCGTAGTGCCCGCCCGCCCGCCCG
195 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGTCCG
* * * * * * * * * * **
13380068 TCGGTTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGACTAAGATTGGACTGGAC
260 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
* *
13380133 CGAGGGTTGCTGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
325 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* * * * *
13380198 CACCA-C--CGC-CAGAGAACCTGATCGGCTGCATTGGGGTTCCGATGATC-GGGGGGTCAGGGG
390 CACCATCGTCGCACAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGG
* ** *
13380258 GGTATGCGCACATGATGTAAGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
455 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
13380323 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTACCAGTAG
520 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
13380388 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTCGAGT
585 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * **
13380453 TTTTAGCTG-ATTGTTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTATGAAGTTTGG
650 TTTTAGCTGAATT-ATTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGG
* * * *
13380515 CGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATACTGAACCGTAAAAAGTTTTGAAAATTGTGA
1 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTTAAAAATCGTGA
* *
13380580 AAAATAGAAAATGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
65 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
13380645 TTTACAAGCCATAAAAATGGCATCGTCGTGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
130 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * ** *
13380710 CCCTATCAATCCACGGCTTGCGCATCCCATTTCTCTGGA-CGACGTAGTGCCCGCCTACCCGTCT
195 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GACCGGCGTAGTGCCCGCCCGCCCGTCC
** * *
13380774 GCCCGCTCGTTTCGTCGGTTGGCTTAGGGTTACGGAGTTCATTCCCAATCTAAGATCGGACCAGA
259 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGA
* * * * * *
13380839 CCGAAGGTTTCAGCAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
324 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* ** * * * *
13380904 GCAGCATCACCGGAGCATTGCCAGAGAACCTAACCGGCGGCATT-GGGTTTCGACGATCGGGGGG
389 GCA-C--CATCGTCGCA----CAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGG
*
13380968 GCCGGGGGCGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
447 GCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
13381033 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
511 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
13381098 TGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
576 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
13381163 ACTTTGAGTTTTTGGCTGAATTATTTTGTGCATGCTAACAAAAATAAAAGTATCAC-ATCTACCA
641 ACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGA-CTACCA
13381227 AGTTTGG
705 AGTTTGG
* * * * *
13381234 GGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCTCGTACAGCAAAAAGTTTTGAAAATCGTGA
1 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTTAAAAATCGTGA
* * *
13381299 AAAATAGAAAATGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAA
65 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
13381364 TTTAAAAGCCATAAAATTGGCACTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAGCA
130 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
*
13381429 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GGCCGGCGTAGTGCCCG-CCGCCCCGCCC
195 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCG-CCCG---
* * *
13381492 TCCCGCCCGCTCGTTTCGTCTGTTGGCATAGGCATACGGAGATCATTCCCAGTCTAAGATC-AGA
256 T-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-A
** * ** * * *
13381556 CTGGACCGAGGGTTGTGGCAAAACATTCTGGGCTCGGGCATGTGCTGGTGCCGTATGTTTCTTCA
319 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * * * * *
13381621 CCGGGGCACCATCGTCG---A-AGAACCTGACCGACGACATTGGGGTTCCGGTGGTCTGGGGGGT
384 TCGGGGCACCATCGTCGCACAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGC
* **
13381682 CGGGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGTGCTTATATTGGCCCCCTA
449 CGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
13381747 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
513 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
13381812 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAAC
578 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
13381877 TTTGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
643 TTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGT
13381942 TTGG
708 TTGG
* * * **
13381946 GGCCAAAATTCCTTTCGAAAAAATTTTGAAAAATACCGAACTGTAAAAAGTTTTAAAAATTATGA
1 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTTAAAAATCGTGA
*
13382011 AACATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
65 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
13382076 TTTACAAGCCATAAAAATGGCAGTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
130 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
13382141 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCACCGACGTAGTGCCCGTCTGCCCGTCCG
195 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGTCCG
* *
13382206 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
260 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
* ** *
13382271 CGAGGGTTGCGGTAGCACATGCTGGGCTCAGGG-ATGTGCTGGTGTTGCATTTTTCTTCGTCGGG
325 CGAGGGTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* *
13382335 GCACCATCGTCGGAGCATCACCGGTGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGG
389 GCACCATCGTC---GCA-CA---GAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGG
* * *
13382400 GCCGGGGGGGTGTGCACAGATGATGTGCGATGGGTGCTGGTA-TTTGCCCTTATATTGGCCCCCT
447 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
13382464 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
512 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
13382529 GCCAGTAGCCATTAAAGTGTTTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATGTTGTACA
577 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* **
13382594 CTTCGAGTTTTTAGCTGAA-TATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGACTAAAAA
642 CTTCGAGTTTTTAGCTGAATTA-TTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAA
13382658 GTTTGG
706 GTTTGG
* * * * * *
13382664 GGCCAAAAATCCTTTCAAAAAAATTCT-ATAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGA
1 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTTAAAAATCGTGA
* * *
13382728 AAAATAGAAAACCG-GTCGTCTTGTCATGAAAATTCACGTGAAGGCTTAAGGGACCATTATATGA
65 AAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
13382792 ATTTACAAGCCATAAAAATGGCATTGGCATG-AAAAATTATGAAGATGTGCCTAAACCCACCTAC
129 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA-TATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
13382856 CACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCTTAATGCCCGCCCGCCCGCC
193 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGTC
* *
13382921 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
258 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
13382979 AGATCGGATC
Statistics
Matches: 2167, Mismatches: 249, Indels: 86
0.87 0.10 0.03
Matches are distributed among these distances:
707 330 0.15
708 3 0.00
709 119 0.05
710 7 0.00
711 18 0.01
712 474 0.22
713 23 0.01
714 2 0.00
716 7 0.00
717 269 0.12
718 279 0.13
719 478 0.22
720 45 0.02
721 2 0.00
722 111 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTTAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGTCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC
ACCATCGTCGCACAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGG
Found at i:13383144 original size:26 final size:26
Alignment explanation
Indices: 13383108--13383157 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13383098 GTTGACTTAG
13383108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13383134 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
13383158 CAGATCGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13385622 original size:26 final size:26
Alignment explanation
Indices: 13385586--13385638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13385576 GTTGACATAG
*
13385586 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13385612 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13385638 G
1 G
13385639 ATAGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13386502 original size:26 final size:26
Alignment explanation
Indices: 13386473--13386526 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
13386463 GTTGATTTAG
* *
13386473 GCATACGGATTTCATTACCAATCTAA
1 GCATACAGAGTTCATTACCAATCTAA
* *
13386499 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAATCTAA
13386525 GC
1 GC
13386527 TCAGACCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAATCTAA
Found at i:13387177 original size:887 final size:879
Alignment explanation
Indices: 13384717--13388115 Score: 4335
Period size: 899 Copynumber: 3.8 Consensus size: 879
13384707 ATTGGCTTAG
* * * * * *
13384717 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCTCATGCTGGG
* * * * *
13384782 CTCGGTCATGTGCTGGTGCCGTAATTTTT-TTCATTGGGGCACCAT--------CA-C--CAGAG
66 CTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
13384835 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGTGGGGTCTGCGCACATGAT
130 AACCTAACCGG-GACATT-GGGTTCCGGCGATC----GGG-AGGGGT---G--TGCGCACATGAT
* * *
13384900 GTGCGATGGGTGCTGGCACTTGGCTCTTATTTTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
183 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * *
13384965 CACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGGCATTAAAGTGTCTAA
248 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
13385030 AATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
313 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
13385095 TTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
378 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * *
13385160 AAAAGTTAAAAAAACCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
443 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
13385225 CTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATG
508 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
13385290 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
573 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * *
13385355 GCGCATCCTGTCTCTCTCGCC-GGCGTAGCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGT
638 GCGCATCCCGTCTCTCTGGCCGGGCATA----------G--TGCCCGCCCGCTCGTTTCGTCAGT
* * * * * * *
13385419 TAGCTTGGGCATAAGGAGTTAATTCCCATTCTAAGATTC-TACCAGATCGAGGGTTGCGGCAGTA
691 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGTTGCGGCAGTA
* * * * ** *
13385483 GGATCGACAGCACGCAGAGGGGGACCCGGCTGATCCCCGGATTGTGCATCCCACCCCTCTGGCCG
755 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCG
* *
13385548 GCTGAGCGCCCTCACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
820 GCTGAGCGCCCTCACGCTCGTTTCGTGGGTTG--ATAGGCATACGGA-TTCATTACCA-TCTAA
* * * * * *
13385612 GCATACGGAGTTCATTCCCAATCTAAGAT-AGGACTGGACCGAGCGTTGCGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTACGGCAGCTCATGCTGG
* * *
13385676 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
13385741 AACCTAACC-GG-CATTGGGGTTCCGGCGAACGGGGGGGCCGAGGGGTGTGCGCACATAATGTGC
130 AACCTAACCGGGACATT-GGGTTCCGGCGATC-----GG--GAGGGGTGTGCGCACATGATGTGC
* *
13385804 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
13385869 CTCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
13385933 GGGAAACCTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTCAGCTGATTTTTTTTGT
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
13385998 GCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGTCCAAAACTCCTTCCAAAAAAA
382 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
13386063 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
447 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
13386128 CCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
512 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
13386193 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
577 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * *
13386258 ATCCCGTCTGTCTGGCC-GGCGTAATGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAAGCATACGG
642 ATCCCGTCTCTCTGGCCGGGCATAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
* * *
13386322 AGTTCATTCCCAGTCTAAGATCA-AGCCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
707 AGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCA
* * * *
13386386 GAGGGGGACCCGACCGATCCTTGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCTCACG
771 GAGGGGGACCCGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACG
13386451 CTCGTTTCGTGGGTTGATTTAGGCATACGGATTTCATTACCAATCTAA
836 CTCGTTTCGTGGGTTGA--TAGGCATACGGA-TTCATTACC-ATCTAA
* * * * *
13386499 GCATACAGAGTTCATTCCCAGTCTAAGCTCAGACCAGATCGAGGGTCACGGTAGCTCATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCTCATGCTGGG
* * * * **
13386564 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACAATCACCGGAGCATCGTCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
13386629 ACCTCACCGGTGACATTAGGGTTCTGGCGATCGGG-GGGGTGTGCACACATGATGTGCGATGGGT
131 ACCTAACCGG-GACATT-GGGTTCCGGCGATCGGGAGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
13386693 GCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCAACAAACCTCGAGAACCCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* *
13386758 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAATGTCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
13386823 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* **
13386888 AAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
389 -AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
** * * * * *
13386953 AAAATCTTGGACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATAA
453 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
13387018 AACTTCACGTGAAGGCTCAAGGGACCATTGTATGAAATTACAA-CCATAAAAATAGCATTGGCAT
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
13387082 GCAGAAATATGTAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGACTTGCGCATCCCG
583 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
*
13387147 TCTCTCTGGCC-GGTATAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
648 TCTCTCTGGCCGGGCATAGT--------GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
* * * *
13387211 GAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGTAGGATTGGCAGCACGC
705 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGC
* * * *
13387276 AGAGGGGGACCCGGCCGATCCTCGGCTTACGCATCTCGCCCCTCTGGCCGGCTGAGCGGCCGCGC
770 AGAGGGGGACCCGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCAC
* *
13387341 GCTCGTTTCG-CGG--G-T-----T---G-------A-C-T-TAG
835 GCTCGTTTCGTGGGTTGATAGGCATACGGATTCATTACCATCTAA
*
13387364 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAT-ATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGC-TCATGCTGG
* * *
13387428 GCTCGAGCATGTGCTGGTGCCGTA-TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
13387492 AACCTGACCGGCGACATTGGGCTTCCGGTGATCGGGCGGGCCAGGGGTGTGCGCACATGATGTGC
130 AACCTAACCGG-GACATTGGG-TTCCGGCGAT----CGGG--AGGGGTGTGCGCACATGATGTGC
*
13387557 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
13387622 CCCCCTTAAAGAGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13387687 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTT-
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTG
* *
13387751 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAA
381 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
13387816 ATTTTAAAAAATCTCGAACCGAAAAAAGTTTTGAAAAA-CGTGAAAAATAGAAAACAAGTCGTCT
446 ATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13387880 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13387945 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
575 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * * * * *
13388010 GCATCTCATCTCTCT-GCCTGGCGTAGTGCCCGCCCGCTCATTTCGTC-GATTGGCTTAGGAATA
640 GCATCCCGTCTCTCTGGCCGGGCATAGTGCCCGCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATA
*
13388073 CGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTG
704 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
13388116 TGGTAGCACA
Statistics
Matches: 2230, Mismatches: 224, Indels: 132
0.86 0.09 0.05
Matches are distributed among these distances:
862 1 0.00
863 75 0.03
864 58 0.03
865 79 0.04
866 2 0.00
868 5 0.00
869 1 0.00
870 151 0.07
871 306 0.14
872 5 0.00
877 1 0.00
880 1 0.00
882 117 0.05
883 187 0.08
884 154 0.07
885 4 0.00
886 3 0.00
887 297 0.13
888 4 0.00
889 1 0.00
890 18 0.01
891 159 0.07
892 1 0.00
894 6 0.00
895 91 0.04
899 345 0.15
900 110 0.05
902 1 0.00
903 20 0.01
904 8 0.00
905 6 0.00
906 13 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCTCATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTAACCGGGACATTGGGTTCCGGCGATCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
CTCTGGCCGGGCATAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACC
CGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGT
GGGTTGATAGGCATACGGATTCATTACCATCTAA
Found at i:13389234 original size:708 final size:709
Alignment explanation
Indices: 13387353--13389544 Score: 3267
Period size: 708 Copynumber: 3.1 Consensus size: 709
13387343 TCGTTTCGCG
* * * * *
13387353 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * *
13387418 CATATGCTGGGCTC-GAGCATGTGCTGGTGCCGTA-TTTTCTTCGTCGGGGCACCATCGCCGGAG
66 CACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAG
* * ** *
13387481 CATCGCCGGAGAACCTGACCGGCGACATTGGGCTTCCGGTGATCGGGCGGGCC--AGGGGTGTGC
130 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGC
13387544 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
194 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
13387609 TCAACAACTCACACCCCCTTAAAGAGCATTTGAA-ATTTTACAAGTTTGCTGCCAGTAGCCGTTA
259 TCAAGAACTCACACCCCCTTAAAGAGCATTT-AAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
13387673 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
323 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
13387738 CTGAATTGTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
388 CTGAATT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
* *
13387802 TTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGA-AAAAAGTTTTGAAAAACGTGAAAAATAG
452 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC-ACAAAAAGTTTTGAAAATCGTGAAAAATAG
* * * *
13387866 AAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAT
516 AAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
13387931 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
581 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
13387996 GATCCACGGCTTGCGCATCTCATCTCTCT-GCCTGGCGTAGTGCCCG-C-CC-GCTCATTTCGTC
646 GATCCACGGCTTGCACATCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCGCCTGCTCATTTCGTC
* * * * *
13388057 GATTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * * *
13388122 CACAAGCTGGGCTCAGGTATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACTATCGCCAGAGC
66 CACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGC
* * * * *
13388187 ATCGCCGGAGAACCTAACCAGCGGCATTGAGGTTTCGACGATCGGGGGTGCCGGGGGGGTGTGCA
131 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCG
* * * * *
13388252 CACTTGCTGTGCAATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCGTCAAACCT
195 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
13388317 CCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAA
260 CAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
13388382 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACT
325 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * ****
13388447 AAATATTTTTGTGCATGCCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGCATTAAAACTC
390 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTC
* * *
13388512 CTTCCCGCAAAAATTTTAAAAAATATCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAA
455 CTT-CCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* *
13388577 ACGAGTCATCCTGCCATGAAACTTCACATGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCC
519 ACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
13388642 ATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
584 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
13388707 CCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCTGCTCGTTTCATC
649 CCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCTGCTCATTTCGTC
*
13388769 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* *
13388834 CACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGC
66 CACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGC
* * *
13388899 ATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGAT-AGGGGGCCGGGGGGGTGTGCGC
131 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGC
* * **
13388963 AAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCAGCTATCCCTCATCAAACCTC
196 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
13389028 GAGAAGTCACACCCGCTTAAA-AGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
261 AAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
13389092 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTG
326 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
13389157 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTGC
391 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
** * * **
13389222 TTTTGAAAAAATTTTAAAAAATCCCGTATGACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
456 TTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
13389287 GAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
521 GAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
13389352 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCC
586 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
13389417 ACGGCTTGCCCATCCCGTCTCTCTGGCCGACGTAGTGCCCACGCGCCCGCCCGCCTGCTCATTTC
651 ACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCG-CCGCCTGCTCATTTC
13389482 GTC
707 GTC
*
13389485 GGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
13389545 AGTAGCAAGA
Statistics
Matches: 1327, Mismatches: 138, Indels: 34
0.89 0.09 0.02
Matches are distributed among these distances:
704 85 0.06
705 68 0.05
706 6 0.00
707 241 0.18
708 425 0.32
709 164 0.12
710 90 0.07
711 6 0.00
712 163 0.12
716 77 0.06
717 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (709 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGC
ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
AAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
GAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCTGCTCATTTCGTC
Found at i:13389707 original size:26 final size:26
Alignment explanation
Indices: 13389655--13389707 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13389645 GTTGACTTAG
* *
13389655 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATATAA
13389681 GCATATGGAGTTCATTCCCAATATAA
1 GCATATGGAGTTCATTCCCAATATAA
13389707 G
1 G
13389708 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATATAA
Found at i:13391513 original size:719 final size:715
Alignment explanation
Indices: 13389681--13396167 Score: 6331
Period size: 719 Copynumber: 9.1 Consensus size: 715
13389671 CCCAGTCTAA
* * * * * *
13389681 GCATATGGAGTTCATTCCCAATATAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGT-CAAGATCGGACTGAATCGAGGGTTGCGGA-AGCACATGCTGG
* * * * * *
13389745 GCTCAGGCATGTGCTAGTGTCACATTTTTCTTCG-TCGGGGCACCATCGTC-GGAGCATCGTCAG
64 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGCCACCATCG-CAGGAGCATCGCCGG
* * ** **
13389808 AGAACCTAACCGACGGCATTATGGTTCCGATAATC-GGGGGG-CGGG-GGGTGTGCGCACATGAT
127 AGAACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGGGGCCGGGAGGGTGTGCGCACATGAT
* * *
13389870 GTGCGATAGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACT
* * *
13389935 CACACCCCCGTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
13390000 AATGGGGACACTTTTTTCAAATAGTCGCAAAATCTTGTACACTTCGTGTTTTTAGCTGATTTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTT
*** ** * * * *
13390065 TTGTGCATGTTGACAAAAATACAAGGATCATGTTTACTAAGTTTGGGGCCAAAACTCCTTTCGAA
384 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* ** * *
13390130 AAACTTTTAAAAAATCTTGAACCT-CAAAAAGTTGCAAAAATCATGAAAAATAGAAAACGAGTTG
449 AAAATTTTAAAAAATCCCGAA-CTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
13390194 TCTTGCCATGAAACTTCACGTGAAGGCGTGAGGGACCATTGTATGAATTTACATGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
13390259 GGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCATGGCC
578 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
* * * ** * * * *
13390324 TGCCCATCCCGTCTCTCTGACCGATGCAGTG----CCCGCCCGCCCGTCTGCTCGTTTCATCGAT
643 TGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGGT
*
13390385 TGGCTTGG
708 TGGCTTAG
* * * *
13390393 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGC-GACAGCACAAGCTG
1 GCATACGGAGTTCATTCCCAGTC-AAGATCGGACTGAATC-GAGGGTTGCGGA-AGCACATGCTG
* * * *
13390456 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGG-CACCATCGCCA-GAGCATTGTCG
63 GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGCCACCATCG-CAGGAGCATCGCCG
* * * * * *
13390519 GAGAACCTGACCGACGGCATTGGGGTTCCAACGATC-GAGAGGCCGGGGGGGTGTGTGCACATGA
126 GAGAACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGGCCGGGAGGGTGTGCGCACATGA
13390583 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTTGAGAAC
*
13390648 TCACACCCCCTTAAA-ATGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCT
254 TCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
13390712 AAAATAGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACAGTTCGAGTTTTTAGCTGATTTC
318 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTT-
*
13390777 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCA
382 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* *
13390842 AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATTATGAAAAATATAAAACGAGTC
447 AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
13390907 GTCTTGCCATGAAACTTCATGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
13390972 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGC
577 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGC
* *
13391037 TTGCGCATCCCATCTCTCTGGTCGGCATAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGG
642 TTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGG
*
13391102 TTGGCGTAG
707 TTGGCTTAG
* * **
13391111 GCATTCGGAGTTCATTCCCAATCAACGATCGGACTGAATCGAGGGTTGCGGAAGCACATGCTTTG
1 GCATACGGAGTTCATTCCCAGTCAA-GATCGGACTGAATCGAGGGTTGCGGAAGCACATGCTGGG
13391176 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCGCAGGAGCATCGCCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCGCAGGAGCATCGCCGGAGA
* *
13391241 ACCTGACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGAGGGTGTGTGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTG
* *
13391306 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCATCAAAACTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
13391371 ACCCCCTTAAA-ATGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 ACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13391435 TGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTATTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTT-TTTT
* **
13391500 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAATTTGGGGGAAAAACTCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
13391565 AATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATAT
451 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13391630 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
13391695 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
* *
13391760 GCATCCCATCTCTCTGGTCGGCATAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGG
646 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGG
*
13391825 CATAG
711 CTTAG
* **
13391830 GCATTCGGAGTTCATTCCCAGTCAACGATCGGACTGAATCGAGGGTTGCGGAAGCACATGCTTTG
1 GCATACGGAGTTCATTCCCAGTCAA-GATCGGACTGAATCGAGGGTTGCGGAAGCACATGCTGGG
13391895 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCGCAGGAGCATCGCCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCGCAGGAGCATCGCCGGAGA
* *
13391960 ACCTGACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGAGGGTGTGTGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTG
* *
13392025 CGATGGGTGCTGATACTTGGCCCTTATATTGGTGCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
13392090 ACCCCCTTAAA-ATGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 ACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
13392154 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTCTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTT-TTTT
* *
13392219 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAATTTGGGGGCAAAACTCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
13392284 AATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATAT
451 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13392349 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
13392414 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
* * *
13392479 GCATCCCATCTCTCTGGTCAGCATAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGG
646 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGG
*
13392544 CGTAG
711 CTTAG
* **
13392549 GCATTCGGAGTTCATTCCCAGTCAACGATCGGACTGAATCGAGGGTTGCGGAAGCACATGCTTTG
1 GCATACGGAGTTCATTCCCAGTCAA-GATCGGACTGAATCGAGGGTTGCGGAAGCACATGCTGGG
*
13392614 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCGTAGGAGCATCGCCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCGCAGGAGCATCGCCGGAGA
* *
13392679 ACCTGACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGAGGGTGTGTGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTG
* *
13392744 CGATGGGTGCTGATACTTGGCCCTTATATTGGTGCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
13392809 ACCCCCTTAAA-ATGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 ACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13392873 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTT
* * ** *
13392938 GTGCGTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCC-TCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *** * * * * * *
13393002 AATTGTAAAAAATTTGGAACCGTAAAAAGTTTCGAAAATCGTGTAAAACAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13393067 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
13393132 ATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGT
581 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
* ** ** ** * *
13393197 GCATCCCATATCTCTGGCCGATGTAGTGCCTGCCCGCCCGCCCGCCCACTGGTTTCGTCGGTTGG
646 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGG
13393262 CTTAG
711 CTTAG
* * * * * * *
13393267 GCATACGAAGTTCATTCCCAATCTAAG-TACGAACTGGATCGAGGGTTGTGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTC-AAGAT-CGGACTGAATCGAGGGTTGCGGAAGCACATGCTGG
** * *
13393331 GCTC-GAGCATGTGCTGGTGCTACATTTTTCTTCGCCGGG--------GC---ACCATCGCCGGA
64 GCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCGCAGGAGCATCGCCGGA
* * *
13393384 GAACCTGACTGGCGGTATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
128 GAACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATG
* * *
13393448 TGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATTAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTC
* * * * *
13393513 ACACCCCCTTAAAGAGCGTTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTTTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * ** * * * ****
13393578 ATGGGGAAAGTTTTTTCAAATGGTCACAAAA-ATAG-A-AAAT-GAATCATCTT-GC-CATGAAA
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT--TTTTAGCTGATTTTT
* * ** **** * * ** * * * *
13393637 CT-T-CACG-TGA-AGGCTTA-AGGGA-C-CATTGTA-TGAGTTTAGAAGCCACAAAAATGGCAT
384 TTGTGCATGCCAACAAAAATACAAGGATCACA-TCTACCAAGTTT-G-GGGC-CAAAACT--CCT
* * * * * * * ** * ** *** ** * ** *
13393694 TGGCACGAGAAATATGAAGATATGCCTAAAC-CCACCTACCACCCT-ATCAATCCACG---GCTT
443 T-CCA-AAAAAATTTTAAAAAAT-CCCGAACTGCA---AAAAGTTTCAAAAAT-CATGAAAAATA
** * ** * * * * * * * ** *
13393754 GCGCATCCCGTC-TCTCTGGCCGACG-TAGTGCCCGTCGGCCCACCCGCCTGCCCGTCCGCCCG-
501 G-AAAACGAGTCGTCT-T-GCC-ATGAAACTTCACGT--G---A--AG---G--CTTAAG--GGA
* * * ** * * ** * ** * * *
13393816 CCCTCTCGTTTCTTCG-GTTGGCTTAGGCATACGAA-GTTCATTCCCA-GTCTAAGATCAGACCG
548 CCAT-T-G--T-AT-GAATTTAC-AAGCCATAAAAATG-GCATTGGCACG--T-AGA-AATA-TG
* * * * ** ** * * * *
13393878 AACCCGAGGCTGTGCAGTTAGGATCGA-C-AGCCACACAGAGGGGGACCCGACCGATCCTCGGTG
600 AA---GA---TGTGC--CTA-AACCAACCTA-CCAC-CCTA--TCGATCC-A-CG--GCT-TG-C
* * ** * * * * * * ***** *
13393941 GCTTCTCGCCCCTCTGGCC-GTG-AGCGCTCCGCACGCTCATTTTCC-G-TTGACTTAACATACG
646 GCATCCCATCTCTCTGGCCGGCGTAGTGC-CCACCCGCCCGCCCGCCTGCTTG--TT-TCAT-C-
* *
13394002 AAGGCATTCCCAGC-TAA
705 --GG--TT---GGCTTAG
* * * * * * ** *
13394019 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCAGACTGGA-GGTTGCGTTTAGCA-ATGCTA
1 GCATACGGAGTTCATTCCCAGTC-AAGATCGGA-CTGAATCGAGGGTTGCG-GAAGCACATGCTG
** *** *
13394082 GGCTC-GGCAT-TGCTTTTG-C-CA-TTTTCTTCGC-GGTTTTG-CACCATCGTCCCTTA-CCTC
63 GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGG----GCCACCATCG--CAGGAGCATC
* * * * ** *
13394139 -TCGTGAGAA--TGACC-GCGACATTGGCGTTTCG-GTATC----GGG-C---AGATTTTGCGCA
122 GCCG-GAGAACCTGACCGGCGGCATTGGGGTTCCGCG-ATCGGGGGGGCCGGGAGGGTGTGCGCA
* * *
13394191 CAT-ATGTGC-AT-GGT-C-AG-ACCTGG-CC-TATATTGG-CCCT-T---TCATCAAGCC-TGA
185 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGA
13394242 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
250 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
13394307 TCTAAAATCGGGACAC---TTT----T--T-------TC----A-A--TCGAGTTTTTAGGTAAA
315 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GA
* * *
13394349 TTTTCTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
379 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
13394414 CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
444 CCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
13394479 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTCTGAATTTACAAGCCATAA
509 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*** * *
13394544 AAAT-GCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCAC
574 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCAC
* * *
13394608 GGCTTGTGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CT-C--GTTTCGT
639 GGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCAT
13394669 CGGTTGGCTTAG
704 CGGTTGGCTTAG
* * * * * * *
13394681 GCATACGGAGTTCATTCCCAGTTTAAGATCGAACCAGACT-GAGGGTTGTGGCAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAG-TCAAGATCGGA-CTGAATCGAGGGTTGCGGAAGCACATGCTGG
* * * * *
13394745 GCTCAGGCATGAGCTGGTGCCGTATTTTTCTTTGCCGGGCCACCATCGTC-GGAGCATCACCGGA
64 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCG-CAGGAGCATCGCCGGA
* * ** *
13394809 GAACCTGATCGGTGGCATTGGGGTGTCACGGGCGATCGGGGGGGGGGGGGGGGGTGTGCGCACAT
128 GAACCTGACCGGCGGCATTGGGGT-TC-C--GCGATC-GGGGGGGCCGGGAGGGTGTGCGCACAT
* * **
13394874 GATGTGCGATGGGTGCTGGTACTTAGCCCTTATTTTGGCCCACTATCCCTCATCAAACCTCAAGA
188 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTTGAGA
* *
13394939 ACTCACACACCCC-TAAAGAGCGTTTGAGATTTTACAGGTTTGCTCGCCAGCAGCCTATTAAAAG
252 ACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCC-ATT-AAAG
* * * * * *
13395003 TGTCTGAAAACGGGGATA-GTTTTT-AAATAGTCACAAAATCTTGCTTACACTTGGATTTTTTAG
313 TGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG--TACACTTCGAGTTTTTAG
* * *
13395066 CTGGAAATTTTTTTTGTCCAAGCCAAAACAAAATACAA-GATCA-ATGCCTACCAAGTTT-GGGC
375 CT-G--A-TTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACAT--CTACCAAGTTTGGGGC
* * * * * ** *
13395128 CAAAAAATCATTCCGAAAAAATTTTAAAAAATCTCAAACCATTAAAAAAGTTTCAAAAATCGTGA
433 C-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA-C-TGCAAAAAGTTTCAAAAATCATGA
* *
13395193 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAACG-GAAGGCCTAATGGGACCATTGTATG
495 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAA-GGGACCATTGTATG
* * ** ** *
13395257 AATTTACAAGCCATAAAAATGGCAATGGCACGTAGAAGTACAAAGATGTGATTAAACCCACCTAC
558 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTAC
* * * * *
13395322 CACCCTATCGATCCACGGCTTGCACATACTATCTCTCTGGCCGACGTAGT--TCA--CGCCCGCC
623 CACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCC
*
13395383 CGCCCGCTTGTTTCATCGGTTGGCTTAG
688 CGCCTGCTTGTTTCATCGGTTGGCTTAG
* * * * *
13395411 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTC-AAGATCGGACTGAATCGAGGGTTGCGGAAGCACATGCTGGG
* * * * ** **
13395476 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTG-TCGGGGCACCATCGTTGGAGCATCATCGGAG
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGCCACCATCGCAGGAGCATCGCCGGAG
* *
13395540 AACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATTATGT
129 AACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGT
* * * * *
13395604 GTGCTGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCA
* **
13395669 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
13395734 -CGGGACAGTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTGGCTGACTGTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTT
* * * * *
13395798 ATGCAAGCCAA-AAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
386 GTGCATGCCAACAAA-AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* *** * *
13395862 AAATTTTAAAAAATCCCGAACCGTTGAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATC
450 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
13395927 TTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13395992 CATTGGCACGTAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
* * * ** ** *
13396057 CACATCCCATTTCTTTGGCCGATGTAGTG----CCCGCTTGCCCG-CT-C--GTTTCATCGATTG
645 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGGTTG
13396114 GCTTAG
710 GCTTAG
* * *
13396120 GCATACGGAGTTCATTCCCAGTCAAAGATTGGACCGAACCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTC-AAGATCGGACTGAATCGAGGGTTG
13396168 TGGTAGTAGG
Statistics
Matches: 4869, Mismatches: 640, Indels: 535
0.81 0.11 0.09
Matches are distributed among these distances:
661 8 0.00
662 50 0.01
663 7 0.00
664 17 0.00
665 11 0.00
666 7 0.00
667 19 0.00
668 3 0.00
669 2 0.00
670 2 0.00
671 6 0.00
672 1 0.00
673 1 0.00
674 15 0.00
675 11 0.00
676 9 0.00
678 2 0.00
679 1 0.00
680 16 0.00
681 6 0.00
682 7 0.00
683 10 0.00
684 2 0.00
685 6 0.00
686 4 0.00
687 2 0.00
688 9 0.00
689 2 0.00
690 2 0.00
691 4 0.00
692 2 0.00
693 3 0.00
694 14 0.00
695 52 0.01
696 28 0.01
697 16 0.00
698 11 0.00
699 11 0.00
700 3 0.00
701 10 0.00
702 21 0.00
703 16 0.00
704 17 0.00
705 10 0.00
706 176 0.04
707 41 0.01
708 1 0.00
709 62 0.01
710 2 0.00
711 3 0.00
712 140 0.03
713 146 0.03
714 510 0.10
715 18 0.00
716 68 0.01
717 61 0.01
718 492 0.10
719 1681 0.35
720 31 0.01
721 17 0.00
722 50 0.01
723 23 0.00
724 21 0.00
725 137 0.03
726 79 0.02
727 10 0.00
728 67 0.01
729 40 0.01
730 225 0.05
732 3 0.00
733 5 0.00
734 1 0.00
735 81 0.02
736 13 0.00
738 3 0.00
739 2 0.00
740 6 0.00
741 2 0.00
742 13 0.00
743 16 0.00
744 20 0.00
745 2 0.00
746 3 0.00
747 13 0.00
748 6 0.00
749 6 0.00
750 20 0.00
751 4 0.00
752 43 0.01
753 13 0.00
754 3 0.00
756 1 0.00
757 4 0.00
758 13 0.00
759 5 0.00
760 2 0.00
761 8 0.00
762 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
GCATACGGAGTTCATTCCCAGTCAAGATCGGACTGAATCGAGGGTTGCGGAAGCACATGCTGGGC
TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGCCACCATCGCAGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGCGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGGCTTAG
Found at i:13396318 original size:26 final size:26
Alignment explanation
Indices: 13396282--13396331 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13396272 GACTTAGGCT
*
13396282 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
13396308 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
13396332 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:13396752 original size:884 final size:882
Alignment explanation
Indices: 13395411--13397034 Score: 2353
Period size: 884 Copynumber: 1.8 Consensus size: 882
13395401 GTTGGCTTAG
* *
13395411 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
13395476 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGTTGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACAATC----G-G-ATCA-C-GAGA
* * * * *
13395541 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATTATGTGT
123 ACCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGAGCGCACATGATGTGC
* * * * * * *
13395606 GCTGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
188 GATGGGTGCTAGTACTTAGCCCTTATATTCGCCCACTATCCCGCATCAAACCTCGAGAACTCAAA
** *
13395671 CCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTAAAGTGTCTGAAACG
253 CCCCCTTAAAGAGAATTTGAGATTTTACAGATTTGCTGCCAACAGCCATTAAAGTGTCTGAAACG
* * *
13395736 GGACAGTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTGGCTGACTGTTTTTATG
318 GGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATG
* *
13395801 CAAGCCAAAAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
383 CAAGCCAAAAAGAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCCGAAAAAAT
** * *
13395866 TTTAAAAAATCCCGAACCGTTGAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
448 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGC
*
13395931 CATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATT
513 CATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
13395996 GGCACGTAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGCACA
578 GGCACGTAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
* * * * *
13396061 TCCCATTTCTTTGGCCGATGTAGTGCCCGCTTGCCCGCTCGTTTCATCGATTGGCTTAGGCATAC
643 TCCCATCTCTCTGGCCGACGTAGTG-AC-C--GCCCGCTCATTTCATCGATTGGCTTAGGCATAC
*
13396126 GGAGTTCATTCCCAGTCAAAGATTGGACCGAACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGC
704 GGAGTTCATTCCCAGTCAAAGATCGGACCGAACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGC
13396191 AGAGGGGGACCCGATCAATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTAGGCGCCCGCAC
769 AGAGGGGGACCCGATCAATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTAGGCGCCCGCAC
13396256 GCTCATTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
834 GCTCATTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
* *
13396305 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13396370 CTCGGGCATGTGCTGGTGTCGTATTTTTGTTCGTCGGGGCACAATC-G-TCA-GAGAAGCTAACC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACAATCGGATCACGAGAACCTAACC
* * * * * *
13396432 GGTGGCATTGGGGTTCTGGCGATC-GGGGGGTCAGGGGGTGAGCGTACATGATGTGCGATGGGTG
131 AGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGAGCGCACATGATGTGCGATGGGTG
* * * *
13396496 CTGGTACTTAGCCCTTATATTCGTCCACTATCCCGCATCAAACCTCGAGAAGTCATAACCCCTTT
196 CTAGTACTTAGCCCTTATATTCGCCCACTATCCCGCATCAAACCTCGAGAACTCA-AACCCCCTT
** * * *
13396561 AAAGAGAATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACAT
260 AAAGAGAATTTGAGATTTTACAGATTTGCTGCCAACAGCCATTAAAGTGTCTGAAA-CGGGACAG
* * *
13396626 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC-GAAAATG-TTTTGTGCATG
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG--AATGTTTTTATGCAAG
* *
13396689 CCAACAAA-AATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCGAATAAATTTT
387 CCAA-AAAGAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCCGAAAAAATTTT
* * *
13396753 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAATAAGTCATCTTGCCAT
451 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCAT
*
13396818 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
516 GAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
13396883 ACGTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
581 ACGTAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
* * * * * * *
13396948 CGTCTCTCTGGCTGGCGTAGTGACCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATGCGGAGTTC
646 CATCTCTCTGGCCGACGTAGTGACCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTC
* *
13397013 ATTCCCATTCTAAGATCGGACC
711 ATTCCCAGTCAAAGATCGGACC
13397035 AGACCAAAGG
Statistics
Matches: 648, Mismatches: 77, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
880 54 0.08
882 81 0.12
883 89 0.14
884 311 0.48
885 6 0.01
886 3 0.00
888 1 0.00
894 103 0.16
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (882 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACAATCGGATCACGAGAACCTAACC
AGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGAGCGCACATGATGTGCGATGGGTG
CTAGTACTTAGCCCTTATATTCGCCCACTATCCCGCATCAAACCTCGAGAACTCAAACCCCCTTA
AAGAGAATTTGAGATTTTACAGATTTGCTGCCAACAGCCATTAAAGTGTCTGAAACGGGACAGTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCAAGCCAA
AAAGAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAAC
TGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
AAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCT
CTCTGGCCGACGTAGTGACCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCC
CAGTCAAAGATCGGACCGAACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCC
GATCAATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTAGGCGCCCGCACGCTCATTTCGTG
GGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
Found at i:13397585 original size:705 final size:709
Alignment explanation
Indices: 13396451--13397747 Score: 1924
Period size: 705 Copynumber: 1.8 Consensus size: 709
13396441 GGGGTTCTGG
* *
13396451 CGATCGGGGGGTCAGGGGGTGAGCGTACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATAT
1 CGATCGGGGGGTCAGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGCTACTTAGCCCTTATAT
* * *
13396516 TCGTCCACTATCCCGCATCAAACCTCGAGAAGTCATAACCCCTTTAAAGAGAATTTGAGATTTTA
66 TCGCCCACTATCCCGCATCAAACCTCGAGAACTCATAACCCCCTTAAAGAGAATTTGAGATTTTA
* * * *
13396581 CAGATTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAA
131 CAGATTTGCTACAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* ** * *
13396646 ATCTTGTACACTTTGAGTTTTTAGCGAAAATGTTTTGTGCATGCCAACAAAAATACAAGGATCAC
196 ATCTTGTACACTTCGAGCCTTTAGCG-AAATGTTTTGTGCATACCAAAAAAAATACAAGGATCAC
* ** *
13396711 ATCTACCAAGTTTGGAGCCAAAACTCCTTCCGAATAAATTTTAAAAAATCCTGAACCGTAAAAAG
260 ATCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG
* * * *
13396776 TTTCAAAAATTATGAAAAATAGAAAATAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
325 TTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACATCACATGAAGGCTTAAG
* *
13396841 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAAATGTGCC
390 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCC
* * * *
13396906 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGA
455 TAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGA
* * *
13396971 C-C-GCCCG-T-TCATTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCATTCTAAGATCGG
520 CTCTGCCCGCTCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
13397032 ACCAGACCAAAGGTTACGGCAGCACATGCTAAGCTCGGGCATGTGCTGGTGCCACATTCTTCTTT
585 ACCAGACCAAAGGTTACGGCAGCACATGCTAAGCTCGGGCATGTGCTGGTGCCACATTCTTCTTT
13397097 GTCGGGACACCATCGCCGGAGCATCGCCGGAGAACCTGATCGGCGGCATAGGGGTTTCGA
650 GTCGGGACACCATCGCCGGAGCATCGCCGGAGAACCTGATCGGCGGCATAGGGGTTTCGA
* * * *
13397157 CGATCGGGCGGGTCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGCTACTTGGCCCTTAT
1 CGATCGGG-GGGTC-AGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGCTACTTAGCCCTTAT
* * * * *
13397222 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTT
64 ATTCGCCCACTATCCCGCATCAAACCTCGAGAACTCATAACCCCCTTAAAGAGAATTTGAGATTT
* * *
13397286 TACAGGTTTGCTACAAGTAGCCTTTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACA
129 TACAGATTTGCTACAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
** * *
13397351 AAATCTTGTACGGTTCGAGCCTTTAGCTG-AATTTTTTTTGCATACCAAAAAAAATACAAGGATC
194 AAATCTTGTACACTTCGAGCCTTTAGC-GAAATGTTTTGTGCATACCAAAAAAAATACAAGGATC
** * *
13397415 ATGTCTACC-AGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCATAA
258 ACATCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
* * ** *
13397479 AGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCTATGAAACATCACATGAAGGCTTA
323 AGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACATCACATGAAGGCTTA
* *
13397544 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTG
388 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTG
13397609 CCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGT
453 CCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGT
* *
13397674 GCCTGTCTGCCCGCCCTCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
518 GAC--TCTGCCCG--CTCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
13397739 GATTGGACC
579 GATCGGACC
13397748 GGACTGAGGG
Statistics
Matches: 519, Mismatches: 61, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
705 229 0.44
706 46 0.09
707 109 0.21
708 78 0.15
709 5 0.01
712 1 0.00
713 51 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (709 bp):
CGATCGGGGGGTCAGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGCTACTTAGCCCTTATAT
TCGCCCACTATCCCGCATCAAACCTCGAGAACTCATAACCCCCTTAAAGAGAATTTGAGATTTTA
CAGATTTGCTACAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGCCTTTAGCGAAATGTTTTGTGCATACCAAAAAAAATACAAGGATCACA
TCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACATCACATGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCCT
AAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGAC
TCTGCCCGCTCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCAAAGGTTACGGCAGCACATGCTAAGCTCGGGCATGTGCTGGTGCCACATTCTTCTTTG
TCGGGACACCATCGCCGGAGCATCGCCGGAGAACCTGATCGGCGGCATAGGGGTTTCGA
Found at i:13397908 original size:26 final size:26
Alignment explanation
Indices: 13397872--13397924 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13397862 GTTGACTTAG
*
13397872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13397898 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13397924 G
1 G
13397925 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13399388 original size:898 final size:888
Alignment explanation
Indices: 13397007--13400348 Score: 4228
Period size: 878 Copynumber: 3.8 Consensus size: 888
13396997 TAGGCATGCG
* * * *
13397007 GAGTTCATTCCCATTCTAAGATCGGACCAGACCAAAGGTTACGGCAGCACATGCTAAGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTAAGCTCGGGC
* * *
13397072 ATGTGCTGGTGCCACATTCTTCTTTGTCGGGACACCATCGCCGGAGCATCGCCGGAGAACCTGAT
66 ATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
*
13397137 CGGCGGCATAGGGGTTTCGACGATCGG-GCGGGTCGGGGGGGTGTGCGCACATGATGTGTGATGG
131 CGGCGGCATAGGGGTTTCGACGATCGGAG-GGGTCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
13397201 GTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
13397266 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACAAGTAGCCTTTAAAGTGTGTGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGAC
** ** * *
13397331 ACTTTTTTCAAATGGTCACAAAATCTTGTACGGTTCGAGCCTTTAGCTGAATTTTTTT-TGCATA
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATG
*
13397395 CCAAAAAAAATACAAGGATCATGTCTACC-AGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTA
390 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * *
13397459 AAAAATCCCAAACCGCATAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCTATG
455 AAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
13397524 AAACATCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** *
13397589 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCC
585 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
*
13397654 GTCTCTCTGGCCGACGTAGTGCCTGTCTGCCCGCCCTCTCGTTTCGTCAGTTGGCTTAGGCATAC
650 GTCTCTCTGGCCGACGTAGTGCC---C-GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
* * * *
13397719 GGAGTTCATTCCCAGTCTAAGATTGGACCGGA-CTGAGGGTTGCAGTAGTAGGATCGACACCATG
711 GGAGTTCATTCCCAGTCTAAGA-TCGATCGGATC-GAGGGTT-C-GCAG-AGGAT-GGCA-CATG
* * * * * * *
13397783 TAGAGGGGGACCCGACCTATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGTCTGAGCCCCCACA
769 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTAAGCACCCATA
* * *
13397848 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
833 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCCTA-A
* **
13397905 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTACGGCAGCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTACGACAGCACATGCTAAGCTCGGG
* * ** * ** * *
13397969 CATGTGCTGGTGCCGCA-TTTTCCTTCCCTAGGGCACCATCATCGGAGCATCACCGGAGAACTTG
65 CATGTGCTGGTGCCACATTTTTCTTTGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * *
13398033 ACCGGCGGCGTTA-GGGTTTCGGCGAT-GGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
129 ACCGGCGGC-ATAGGGGTTTCGACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGAT
*
13398096 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTC--G-----------
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
13398148 ------AGA--ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAAATGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT-AAATGGG
*
13398204 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTAAATTTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
* * * * * *
13398269 ATGCTAACAAAAATACAAGGATCACGTCTGCCAAGGTTGGGGCCAAAATTCCTTCCGAAAAAATT
387 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATT
* **
13398334 TGAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
452 TTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
13398399 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
13398464 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCATGCACAT
582 GCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
* * * * *
13398529 CCTGCCTCTCTAGCCGACGTAGTGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
647 CCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
* * * *
13398594 TATGGAGTTCATTCCTAGTCTAAGATCAGATTGGATCGAGGGTTACGGCAGCAGGATTGGTAGCA
708 TACGGAGTTCATTCCCAGTCTAAGATC-GATCGGATCGAGGGTT-C-GCAG-AGGA-TGGCA-CA
* *** * *
13398659 TGCAAAGGGGGACCCGGTAGATCCCCGGCTTGCGTATCTCACCCCTCTGGCCGGCTAAGCACCCA
767 TGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTAAGCACCCA
* * * *
13398724 TAGGCTCATTTCGTGGGTTGACTTAGGCATGCGAAGTTCATTCCCAGTGTAAGCCTAA
831 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCCTAA
* * * *
13398782 GGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGC-ATAGCACATGCTAAGCTCGGG
1 -GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTAAGCTCGGG
* * * * * * *
13398846 CATCTACTGGCGTCACATTTTTCTTTATCGGGGCACCATCGCCGGAGGATCGCCGGAGAACTTGA
65 CATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* *
13398911 CCGGCGGCATAGGGGTTCCGATGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGG
130 CCGGCGGCATAGGGGTTTCGACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
13398976 GTGCTGGTATTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACA-CCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
13399040 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGAC
** *
13399105 GGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATG
* *
13399170 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGTGCCAAAACTCCTTCCAAAAAAATTTTA
390 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
13399235 AAAAAT-TCCAAACCGTAAAAATTTTAAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCAT
455 AAAAATCT-CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
***
13399299 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAATCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* **
13399364 ACACAAAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGTATCC
584 ACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
* * * *
13399429 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTAGCTTAGACATACGAA
649 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
* * * *
13399494 GTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTT-GC-GA-CA--GCACA--CAGAGCGAG
714 GTTCATTCCCAGTCTAAGATCG-ATCGGATCGAGGGTTCGCAGAGGATGGCACATGCAGAGGGGG
* * *
13399552 ACCCAACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGTACGCTCGTTT
778 ACCCGACCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTAAGCACCCATACGCTCGTTT
13399617 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA--GT----CT-A
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCCTAA
* * * **
13399657 -AG---------A-TC--AGATCGGA-CTG--C--GCGTTACGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTAAGCTCGGGC
** * *
13399704 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
66 ATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* * * * * * * * *
13399769 CGACGACGTTGGGG-TTCTATCAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGG
131 CGGCGGCATAGGGGTTTCGA-CGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
13399833 CTACTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
13399898 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCCCATTAAAGTGTCTAAAATGGGGA
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTTAAATGGGGA
* * *
13399962 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTTCA
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTTGTGCA
* * **
13400027 TGCCAACAAAAATACAAGGATCCCGTCTACCAAGTTTGG-GACCTGAACTCCTTCCGAAAAAATT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTG-CCAAAACTCCTTCCGAAAAAATT
** * *
13400091 TTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACC
452 TTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
13400156 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
13400221 GCACATAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTACGCAT
582 GCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
* * ** *
13400286 CCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTTGTTGGTTGGCATAGGCATA
647 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
13400349 TGGGGTTTCG
Statistics
Matches: 2136, Mismatches: 257, Indels: 141
0.84 0.10 0.06
Matches are distributed among these distances:
856 8 0.00
857 177 0.08
858 113 0.05
859 301 0.14
860 3 0.00
861 6 0.00
863 2 0.00
864 1 0.00
873 2 0.00
875 2 0.00
876 107 0.05
877 112 0.05
878 535 0.25
879 4 0.00
880 3 0.00
882 94 0.04
883 1 0.00
884 2 0.00
885 2 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 2 0.00
893 1 0.00
894 70 0.03
895 1 0.00
896 3 0.00
897 89 0.04
898 486 0.23
899 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTAAGCTCGGGC
ATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
CGGCGGCATAGGGGTTTCGACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCGATCGGATCGAGGGTTCGCAGAGGATGGCACATGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTAAGCACCCATACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCCTAA
Found at i:13401115 original size:26 final size:26
Alignment explanation
Indices: 13401079--13401131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13401069 GTTGACTTAG
*
13401079 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13401105 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13401131 G
1 G
13401132 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13403545 original size:4 final size:4
Alignment explanation
Indices: 13403531--13403560 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
13403521 GCGACGTAGT
*
13403531 GCCC ACCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
13403561 TCATTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.73, G:0.23, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:13403777 original size:26 final size:26
Alignment explanation
Indices: 13403741--13403793 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13403731 GTTGACTTAG
*
13403741 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13403767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13403793 G
1 G
13403794 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13404680 original size:26 final size:26
Alignment explanation
Indices: 13404642--13404694 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13404632 GTTGACTTAG
** *
13404642 GCATACGTTGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13404668 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13404694 G
1 G
13404695 ATCAGACTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13406041 original size:868 final size:867
Alignment explanation
Indices: 13402013--13408993 Score: 7371
Period size: 868 Copynumber: 7.8 Consensus size: 867
13402003 GCATATGAAT
* * * *
13402013 TTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * * *
13402078 TGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCA---T---AG---T--CGGAGAACCTGATCGG
66 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGACGGAGAACCTGACCGA
* *** * * * * *
13402132 CGGCATTGGGGTTTCAACGATC----TG--GGAGGGTGTGCGCAAATGATGTGCGATGGCTGCTG
131 CGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
* * *
13402191 GTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAGCCTCGAGAACTCACACCCACTTAAAA
196 GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT--AA
** *
13402256 AGAGCATTTGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
13402321 TTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAAGTTTTTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
* * * *
13402386 CAAAATTACAAGGATCATGTCAACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAACTTTT-AAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAA
** * * **
13402450 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAA
452 AATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAA
*
13402515 CTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TG
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-
* * ** *
13402579 CAGAAAA-AGGAAGATGTGCCAAAACCCACCTACCACCCTATTTATCCACGGCTTGCGCATCCCA
581 CA-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
13402643 TCTCTCTGGCCGGCGTA--G--TGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
645 TCTCTCTGGCCGGCGTAGTGTCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
13402704 TCATTCCTAGTCTAAGATTGGACCAGACTAAGGGTTACGGCAGCAGGATCGGCAACACGCAGAGG
710 TCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGG
* *** * * * * *
13402769 GGGACCTGGTAGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCAACTGAGTGCCCGCACGCTCG
775 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCG
* * *
13402834 TTTCGTGTGTTGACTTAGGCAAATGGAG
840 TTTCGTGGGTTGACTTAGGCATACGGAG
** ** ** * * *
13402862 TTCATTCCCAGTCTAAGCATTCGGAGTTC-ATTCC--CTGTCTAAGATC-GAAC-TAGACCAAGG
1 TTCATTCCCAGTCTAAG-A-TCGGA-CCCGA--CCGAGGGT-TGCG-GCAGCACAT-G--C-TGG
* ** * * *
13402922 GTTACGGTAGCACATGCTGG-GCTCGAGCA----TGTGC-T-GGTG--CCATCGTCGGAGCATTG
55 GCT-CGG--GCATGTGCTGGTGC-C-A-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTG
* * **
13402978 CCGGAGAACCTGACCGACGACATTGGGGTTCCGGCAATCGGGGTGGCCGGGCGGGGTGTGCACAC
114 ACGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGG-GGCC-GG-GGGGTGTGCACAC
* * * *
13403043 ATGATGTGCGATGGGTGCTGGTACATGGCCCTTGTATTAGCCTCCTATCCCTCATCAAACCTTGA
176 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGA
* ** *
13403108 GAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTATTGCTAGTAGCCATTAAAGTG
240 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
13403173 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAA
305 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
13403238 TTTTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
370 TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * * *
13403303 CCAAAAAAATTTTAAAAAATCCTGAACAGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGA
435 CCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGA
* *
13403368 GT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAA
500 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
13403432 AAATGGCTTTGGCA-TGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
565 AAATGGCATTGGCACTCAA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
13403496 CGGCTTGCGCATCCCGTCTCTCTGGGCGACGTAGTGCCCACCCGCCCGCCCGCCCGCCCGCCCGC
629 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----------------GTCTGCCCGCCCGC
* * ** *
13403561 TCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGG
678 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGG
* ** * * * *
13403626 GTGGTGGCAGCAGGATCGGCAGCATGCAGAAGGGGACCAGAGCGATCCCCGGCTTGCGCATCCCG
743 GTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * * **
13403691 CCCCTCTGGTCGGCTGAGCGACTGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAG
808 CCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
13403751 TTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC
1 TTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GA-C---CC-GACCGAGGGTTGC
* * * * * * * *
13403816 GGCAGCACATGTTGGCCTCGGGCATGTGTTGGAGTCGCATTTTTCTTCGTCGGGGCACCTTCGCC
40 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC
* * * * * * * ** *
13403881 GGTGC-GTCACCGAAGAACCTGACAGATGGCATTGGGGTTTCGACGATCGGGCGAGCCGGGGGGG
105 GGAGCATTGA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGG-GGGCC-GGGGGG
*
13403945 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
167 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
* * *
13404010 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTTCTGCCAGTAGCC
231 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
13404075 ATTAAAGTGTTTGAAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
296 ATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
13404140 TTTGGCTGAATGTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGC
360 TTTAGCTGAAT-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** *
13404204 TAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAA
424 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * * *
13404269 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGATGGAGCATTGTATGAATTT
489 ATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
13404334 ACAAGTCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
554 ACAAGCCATAAAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
13404398 CTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCTGCCTGCCCACT
618 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--T--CTGCCCGCCCGCT
* * * * **
13404463 CGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGACCAGACCAAGGG
679 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGG
* * * * * *** * **
13404528 TTACTGTAGCAGGATCGACAGCACACAGAGGGGGACCCTTTCGATCCCCAGCTTGCGCATCTTGC
744 TTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * * * **
13404593 CCATTTGG-CTGGCTGAGCGTCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGTTG
809 CCCTCTGGTC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* **
13404652 TTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTTGACTGAGGGTTAT
1 TTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C------C-GAC----C-GAGGGTTGC
* * *
13404717 GGCAGCACATACTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
40 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C
* * * * * * *
13404782 GAAGCATCACCGGAGCATCGTCGGAGAACCTGACCGATGGTAATGGGGTTCCGATGATCGAGGGG
102 ---G--T---CGGAGCATTGACGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGG
* *
13404847 CCGGGCGGGTGTGCGA-ACATGATGTACGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCT
159 CCGGG-GGGTGTGC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCT
*
13404911 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
221 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
13404976 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTCTTCAAATGGTCACAAAATGTTGAAC
286 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAATGGTCACAAAATCTTGTAC
* * * * *
13405040 ACTTCCAATTTTTAGCTGAATTTTTTT-TCACATGCCAACAAAAATACAACGATCACGTC-AGCA
350 ACTTCGAGTTTTTAGCTGAATTTTTTTAT-GCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * **
13405103 ATGTTCGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAA
414 A-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAA
* *
13405168 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCAT
478 AATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
13405233 TATATGAATTTACAAGCCATAAAAATGGCATTGGCACTTAAAAATATGAAGATGTACCTAAACCC
543 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGTGCCTAAACCC
* *
13405298 ACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGTTTGCCCG
608 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGTCTGCCCG
* * * *
13405363 CCCGTTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
673 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * * * *
13405428 TGAGGGTTGTAGTAGTAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCA
738 TGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * *
13405493 TCGCACCCCTCTGGTCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGACTT-GGCATACGGAG
803 TCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * * *
13405557 TTCATTCGCAGTCTAAGATCGGACCCGACCGAGGGTTACGACCGCATATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * *
13405622 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGAAGAATTGACGGAGAACCTGACCGA
66 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGACGGAGAACCTGACCGA
*
13405687 CGGCATTGGGGTTCCGGTGATTGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
131 CGGCATTGGGGTTCCGGTGATCG-GGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
* *
13405752 GGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCATAAA
195 GGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
13405817 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
13405882 TTTCAAATGGTCGCAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTCTTTTGTGCATGCCAA
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTATGCATGCCAA
* *
13405947 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
13406012 ATCTTGAACCGT-AAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
453 ATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAAC
* *
13406076 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCA-TGT
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-C
* * *
13406140 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCGTCCCGTC
582 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
13406205 TCTCTGGCTGGCGAAGTACCCGCCCGCCCACCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCTTA
647 TCTCTGGCCGGCGTAGT----GTCTG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
13406270 CGGAGTTCATTCCTAGTCTAAGATCAGACTC-GACTGAGGGTTGCGGCAGCATGATCGGCAGCAC
704 CGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCAC
* * * * *
13406334 GCAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGG
768 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGC
*
13406399 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
833 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
13406434 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGC
1 TTCATTCCCAGTCTAAG-AT-CG--G---------A--C------C----C-GACCGAGGGTTGC
* * * * * * *
13406499 GGCAGCACATGCTAGACTCAGGCATGTGCTGGTGCCACATTTTTATTCGTCAGGGCGCCATCGCC
40 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC
* * **
13406564 GGAGCATTGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGGT
105 GGAGCATTGACGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATC-GGGGGGCC-GGGGGGT
** *
13406629 GTGCATGCATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGGCCCCTATCCCTCATCA
168 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCA
*
13406694 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCA
232 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
13406759 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
297 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
13406824 TAGCTAAATTTTTTTATGCATGCCAACAAAAATATAGGGATCACGTATACCAAGTTTGGGGCAAA
362 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * ** *
13406889 AAATCATTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAATAGTTTTGAAAATCTTGAAAAATA
427 AACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* *
13406954 AAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
492 GAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
13407019 AGCCATAAAAATGGCATTGTCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
557 AGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
13407084 CGATCCACGCCTTGCGCTTCCCGGCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCTCGTTTCGT
622 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGTCTGCCCGCCCGCTCGTTTCGT
* * * * * * * * *
13407145 CGGTTTGCTTTGGCATACAGAGTTTACTCCCAGTCTAAGATTGGACCAGA-TCGAGGGTTACGGC
687 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACT-GAGGGTTGCAGC
* ** * * *
13407209 AGCATGATCGGTGGCACGCAGACGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTG
751 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
13407274 GCCGACTGCGCGCTCGCACGCTCGTTTCGTGAGTTGACTTAGACATACGGAGTTCATTCCTAGTC
816 GTCGACTGAGCGCCCGCACGCTCGTTTCGTG-G--G---T-----T---GA---C--T--TAG--
13407339 TAAGCATACGGAG
858 ---GCATACGGAG
* * *
13407352 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATTCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** * * * * *
13407417 TACTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGG
66 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGACGGAGAACCTGACCGA
* * * * *
13407482 CGACATTGGGGTTCCAGTGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTTCT
131 CGGCATTGGGGTTCCGGTGATCGGGGG-GCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
13407547 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
13407612 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACCCTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
13407677 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GATGAATTTTTTTTGTGCATGCCAA
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTATGCATGCCAA
* * *
13407741 CAAAATTTCAAGGATCATGTC-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
13407805 AT-TTCGAACC-TCAAAAAGTTTCAAAAATCGTGCAAAATAAAAAATGAATCATCTTGCCATGAA
453 ATCTT-GAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAA
* *
13407868 ACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACC
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT
* * * *
13407933 CATAAATACGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCTCGT
581 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
13407997 CTCTCTGGCCGACGTAATGCCCGTCGGCCCGCCCGCTCGTTTCGTCGATTGGCTTAAGG-ATATG
646 CTCTCTGGCCGGCGT-A-G--TGTCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT-AGGCATACG
** * * **
13408061 GAGTTCATTCCCACACTAAGATCCGATCGGAAGGA-GGTTGCGGCAGCAGGATCGGCAGTAGGAT
706 GAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTT---GCAGC---A---GC---AGGAT
* * * * * * **
13408125 TGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCACGCTGGTCGGTTG
759 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTG
* * *
13408190 AGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAG
824 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
13408234 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATTGGATCGGACCGAGGGTTGC
1 TTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C-----------C-GACCGAGGGTTGC
** *
13408299 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGGCATTTTTCTTCGTCAGGGCACCATCGTC
40 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC
* ** *
13408364 GGAGCA-TCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCTGGGGGTG
105 GGAGCATTGA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTG
** * **
13408428 TGTGCACATGATGTGCGATGGGTTCTGGTACTTGTTCCTTATATTGGCCTCCTATCCCTCATCAA
169 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAA
**
13408493 ACCTCGAGAACTCACACCCGTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
233 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
13408558 TAAAGTGTTTGAAATGGGGACACTTTCTTCAAATGGTCACAGAATCTTGTACATTTCGAGTTTTT
298 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
13408623 AGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAA
363 AGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** * ** *
13408688 ACTCCTTCCAAAAAAATTTTAAAAAATCCAGAACAGTAAAAAGTTTTTAAAATCATGAAAAATAG
428 ACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* * *
13408753 AAAACGACTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
493 AAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
13408818 GCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
558 GCCATAAAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * ** *
13408882 CGATGCACGGCTTACGTATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGACCGGT
622 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GTCTGCCCGCCCG--C--T
* * *
13408947 CGTTTTGTCGGTTGGGTTAGGCAAACGGAGTTCATTCCCAGTCTAAG
679 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
13408994 CATACGGAGT
Statistics
Matches: 5200, Mismatches: 639, Indels: 522
0.82 0.10 0.08
Matches are distributed among these distances:
849 16 0.00
850 1 0.00
851 8 0.00
852 10 0.00
853 3 0.00
854 4 0.00
855 6 0.00
856 6 0.00
857 2 0.00
858 12 0.00
860 1 0.00
861 1 0.00
863 31 0.01
867 4 0.00
868 418 0.08
869 235 0.05
870 227 0.04
871 5 0.00
872 82 0.02
876 165 0.03
877 28 0.01
878 2 0.00
879 65 0.01
880 1 0.00
881 1 0.00
882 26 0.00
883 2 0.00
884 6 0.00
885 2 0.00
886 1 0.00
887 5 0.00
888 2 0.00
889 211 0.04
890 211 0.04
891 233 0.04
892 260 0.05
893 2 0.00
894 4 0.00
895 6 0.00
896 12 0.00
897 58 0.01
898 8 0.00
899 4 0.00
900 6 0.00
901 237 0.05
902 5 0.00
903 201 0.04
904 381 0.07
905 31 0.01
906 170 0.03
907 230 0.04
908 398 0.08
909 56 0.01
910 312 0.06
911 283 0.05
912 272 0.05
913 199 0.04
914 2 0.00
916 2 0.00
917 2 0.00
918 26 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (867 bp):
TTCATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGACGGAGAACCTGACCGA
CGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
TTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAAAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGTCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGGATCAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAG
Found at i:13406461 original size:26 final size:26
Alignment explanation
Indices: 13406424--13406476 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13406414 GTTGACTTAG
13406424 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13406450 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
13406476 G
1 G
13406477 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13407353 original size:26 final size:26
Alignment explanation
Indices: 13407317--13407368 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13407307 TTGACTTAGA
*
13407317 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13407343 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13407369 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13408632 original size:908 final size:901
Alignment explanation
Indices: 13405547--13408993 Score: 4622
Period size: 908 Copynumber: 3.8 Consensus size: 901
13405537 GGTTGACTTG
* * * * *
13405547 GCATACGGAGTTCATTCGCAGTCTAAGATCGGACCCGACCGAGGGTTACGACCGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
13405612 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGAAGAATTGA-CGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCA-TCACCGGAG
** * *
13405676 AACCTGACCGACGGCATTGGGGTTCCGGTGATTGAGGGGGCCGGGGGGTGTGCACACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTG
13405741 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13405806 ACCGCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13405871 GGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTCTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* * *
13405936 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
388 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * *
13406001 AATTTTAAAAAATCTTGAACCGT-AAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
453 AATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCT
*
13406065 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
13406130 ATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTAC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
* * ** * *
13406195 GCGTCCCGTCTCTCTGGCTGGCGAAGTACCCGCCCGCCCACCCGCCCGTTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGC---CGACGTA-ATGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
13406260 CTTAGGCTTACGGAGTTCATTCCTAGTCTAAGATCAGACTCG-ACTGAGGGTTGC-G--GCA-GC
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGAAC-GAGGGTTGCGGCAGCATGC
* * * *
13406320 AT-GATCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGT
771 ATGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGT
* * *
13406384 CGGCTGAGCGCCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
836 CGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
13406449 A
901 A
* * * * * * *
13406450 GCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * **
13406515 CTCAGGCATGTGCTGGTGCCACATTTTTATTCGTCAGGGCGCCATCGCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCACCGGAGA
* * * *
13406580 ACCTGACTGACGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGG-GTGTGCATGCATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCA--CATGATGT
*
13406644 GCGATGGGTGCTGGTACTTGGCTCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13406709 CACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13406774 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
13406838 TATGCATGCCAACAAAAATATAGGGATCACGTATACCAAGTTTGGGGCAAAAAATCATTCCGAAA
387 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
13406903 AAATTTTAAAAAATCCTGAACCGTAAATAGTTTTGAAAATCTTGAAAAATAAAAAATGAGTCATC
452 AAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATC
*
13406968 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
13407033 CATTGTCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
* * * * * *
13407098 CGCTTCCCGGCTCTCTGGCCGGCGT-A-----G-TGCCCGCCCGCTCGTTTCGTCGGTTTGCTTT
647 CGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * *
13407156 GGCATACAGAGTTTACTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGCAGCATG-ATCGG
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACGAGGGTTGCGGCAGCATGCAT-GG
* * * * *
13407220 --T-G--GCACGCAGACGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGAC
775 ATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGC
* * * *
13407280 TGCGCG-CTCGCACGCTCGTTTCGTGAGTTGACTTAGACATACGGAGTTCATTCCTAGTCTAA
840 TGAGCGCCT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
13407342 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
13407407 CTCGGGCATGTACTGGTGCCACATTTTTCTTC-ACCGAGGCACCATCGTCGAAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAG-GGCACCATCGTCGAAGCATCACCGGAG
* * *
13407471 AACCTGACCGGCGACATTGGGGTTCC-AGTGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGT
* *
13407535 GTGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13407600 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
13407665 TGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GATGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
13407729 TGTGCATGCCAACAAAATTTCAAGGATCATGTC-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
13407793 AAATTTTAAAAAATTTC-GAACC-TCAAAAAGTTTCAAAAATCGTGCAAAATAAAAAATGAATCA
452 AAATTTTAAAAAA-TCCAGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCA
*
13407856 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
13407921 GGCATTGGCACCCATAAATACGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCAC-GCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
13407985 TGCGCATCTCGTCTCTCTGGCCGACGTAATGCCCGTCGGCCCGCCCGCTCGTTTCGTCGATTGGC
645 TACGCATCCCGTCTCTCTGGCCGACGTAATGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * *
13408050 TTAAGG-ATATGGAGTTCATTCCCACACTAAGATCCGATCGGAAGGA-GGTTGCGGCAGCAGGAT
709 TT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACGAGGGTTGCGGCAGC---AT
* * * *
13408113 CGGCAGTAGGATTGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCAC
769 --GCA-T-GGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * *
13408178 GCTGGTCGGTTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCC
830 TCTGGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
13408243 AGTCTAA
895 AGTCTAA
* * * *
13408250 GCATACGGAGTTCATTCCCAGTCTAAAATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** *
13408315 CTCGGGCATGTGCTGGTGCGGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCACCGGAGA
* *
13408380 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCTGGGGGTGTGTGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* **
13408445 ATGGGTTCTGGTACTTGTTCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACAC
** *
13408510 CCGTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
13408575 GGACACTTTCTTCAAATGGTCACAGAATCTTGTACATTTCGAGTTTTTAGCTGAA-TTTTTTTAT
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTAT
* *
13408639 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * * * *
13408704 TTTTAAAAAATCCAGAACAGTAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGACTCGTCTTG
455 TTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTG
13408769 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
13408834 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTACGT
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
** * * * *
13408899 ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGACCGGTCGTTTTGTCGGTTGGGT
650 ATCCCGTCTCTCTGGCCGACGTAATGCCCGCC-GCCCGCCCG--C--TCGTTTCGTCGGTTGGCT
*
13408964 TAGGCAAACGGAGTTCATTCCCAGTCTAAG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAG
13408994 CATACGGAGT
Statistics
Matches: 2222, Mismatches: 263, Indels: 108
0.86 0.10 0.04
Matches are distributed among these distances:
889 26 0.01
890 203 0.09
891 225 0.10
892 308 0.14
893 8 0.00
894 2 0.00
895 6 0.00
896 12 0.01
897 56 0.03
898 2 0.00
899 2 0.00
901 5 0.00
902 7 0.00
903 237 0.11
904 354 0.16
905 4 0.00
906 3 0.00
907 227 0.10
908 448 0.20
909 46 0.02
911 1 0.00
912 3 0.00
913 37 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTATG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
TCCCGTCTCTCTGGCCGACGTAATGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACGAGGGTTGCGGCAGCATGCATGGATTGGC
AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCG
CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13409007 original size:26 final size:26
Alignment explanation
Indices: 13408971--13409045 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
13408961 GGTTAGGCAA
13408971 ACGGAGTTCATTCCCAGTCTAAGCAT
1 ACGGAGTTCATTCCCAGTCTAAGCAT
* * *
13408997 ACGGAGTTCATTTCTAGTCTAAGGAT
1 ACGGAGTTCATTCCCAGTCTAAGCAT
13409023 ACGGAGTTCATTCCCAGTCTAAG
1 ACGGAGTTCATTCCCAGTCTAAG
13409046 ATCGGATCGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
ACGGAGTTCATTCCCAGTCTAAGCAT
Found at i:13409915 original size:26 final size:26
Alignment explanation
Indices: 13409885--13409935 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13409875 TGACATAGGC
13409885 ATACGGAGTTCATTCCCAATCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
*
13409911 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
13409936 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:13411876 original size:715 final size:715
Alignment explanation
Indices: 13410102--13412184 Score: 2568
Period size: 734 Copynumber: 2.9 Consensus size: 715
13410092 TCTTCACCGA
* * * * ** *
13410102 GGCACCATCG-TCGGAGCATCACCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGG
1 GGCACCATCGCT-GGAGCATTACCAGAGAACCTGATCGACGACATTGGGGTTCCGAAGATCGGGG
* * * *
13410166 GGGCCGGGGGG-TGTGTGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCC
65 GGGACGGGGGGTTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
13410230 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGCTTTTACAGGTTTG
130 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
13410295 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTA
195 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
13410360 CGCTTCGAGTTTTTAGATGAATTTTTTTATGCATGCCAACAAAAATTCAAGGATCACGTCTACCA
260 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* ** * *
13410425 AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAATGTTTTGAAA
325 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAA
* * * ** *
13410490 ATCGTGCAAAATAAAAAACGAGTCATCTTGTAATGAAACTTCACGTGAATGCTTAAGGGACCATT
390 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*** * *
13410555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCAAAAATACGAAGATGCGCCTAAACCCA
455 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAAGATGTGCCTAAACCCA
* * * * * * *
13410620 CCTGCTACCCTATCGATCCATGGCTTGCGTATCCCATCTCTCTAGCCGAGGTAGTGCCCGTCGGC
520 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC--C-GC
* * * * * *
13410685 CCGCCTGCCCGCTAGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAA-CATCG
581 CCGCCCGCCTGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGAATCG
*
13410749 GACCGAAAGGAGGGTTGCGGCAGCACGCAGAGGGGAACCGACCGATTCTCGGCTTGCGCATCCCA
646 GACCGAAACGAGGGTTGCGGCAGCAC-CAGAGGGG-ACCGACCGATTCTCGGC-TGCGCATCCCA
*
13410814 CCCCTCTG
708 CCCCTCGG
* * * * * ** * * * * * ***
13410822 GCCAGCTGAGT-GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTCATTCCCAG-T
1 GGCA-C-CA-TCG-CTGGA-G--CATTACCAGAG--AACCT--G-AT-CGACGACATT-GGGGTT
* *** * * * * * * *
13410885 -CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCATATGCTGGGC-ATGAGGTGGTGGTACTTGG
52 CCGAAGATCGGGGGGGACGGGGGGTTG-TGC-GCAAATGATGTGCGATG-GGTGCTGGTACTTGG
* * * *
13410948 CCCTAATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTA
114 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
**
13411013 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATGCTTTTTTCAAATG
179 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
13411078 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACA
244 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
* * * * *
13411143 AGGATGACGTCAACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACC
309 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACC
* * *
13411208 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAA
374 GTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
13411273 GGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
439 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAA
* *
13411338 GATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGA
504 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
*
13411403 CATAGTGCCCGCCCGCCCGCCTGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
569 CGTAGTGCCCGCCCGCCCGCCTGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * * * *
13411468 GTGTAAGAAT-GGAGTGAACCGAGGGTTGCGGTAGCA-CATACTGGG-CTCGAGC-ATGTGCT-G
634 GTGTAAGAATCGGACCGAAACGAGGGTTGCGGCAGCACCAGA-GGGGAC-CGACCGAT-T-CTCG
* **** * *
13411528 G-TGCCGCCTTTTTCTTCGTCGG
695 GCTG-CGCATCCCAC-CCCTCGG
* **
13411550 GGCACCATCGCTGGAGCATTGCCAGAGAACCTGATCGACGACATTGGGGTTCCGGTGATCGGGGG
1 GGCACCATCGCTGGAGCATTACCAGAGAACCTGATCGACGACATTGGGGTTCCGAAGATCGGGGG
* *
13411615 GGTCGGGGGGTTGTGCGCAAATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
66 GGACGGGGGGTTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
13411680 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
131 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
13411745 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
196 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * *
13411810 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCACACCAACAAAAATACAAGTATCACTTCTACCAA
261 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
*
13411875 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAA
326 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAA
*
13411940 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT-ACAGGCTTAAGGGA--ATT
391 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATT
* *
13412002 GTATGAATTTACTAGCCATAAAAATGGCTTTGGCATGAAAAAATATGAAGATGTGCCTAAACCCA
455 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAAGATGTGCCTAAACCCA
* * * *
13412067 CCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACTCGCCCGC
520 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
13412132 CCG-CT-C-A-TTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTGCAAGA
585 CCGCCTGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGA
13412185 TCAAACTGGA
Statistics
Matches: 1160, Mismatches: 172, Indels: 73
0.83 0.12 0.05
Matches are distributed among these distances:
709 43 0.04
710 1 0.00
711 1 0.00
712 2 0.00
713 124 0.11
714 1 0.00
715 335 0.29
716 14 0.01
717 19 0.02
718 1 0.00
720 6 0.01
721 1 0.00
722 8 0.01
723 3 0.00
724 3 0.00
725 5 0.00
726 9 0.01
727 9 0.01
728 20 0.02
729 5 0.00
730 78 0.07
731 19 0.02
732 9 0.01
733 7 0.01
734 437 0.38
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (715 bp):
GGCACCATCGCTGGAGCATTACCAGAGAACCTGATCGACGACATTGGGGTTCCGAAGATCGGGGG
GGACGGGGGGTTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
CGCCTGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGAATCGGACCG
AAACGAGGGTTGCGGCAGCACCAGAGGGGACCGACCGATTCTCGGCTGCGCATCCCACCCCTCGG
Found at i:13413182 original size:894 final size:891
Alignment explanation
Indices: 13411448--13413972 Score: 3680
Period size: 893 Copynumber: 2.8 Consensus size: 891
13411438 GTTGGCTTAG
* ** * *
13411448 GCATACGGAGTTCATTCCCAGTGTAAGAAT-GGAGTGAACCGAGGGTTGCGGTAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGAACCGAGGGTTGC-GCAGCACATGCTGG
* * * * *
13411512 GCTCGAGCATGTGCTGGTGCCGCCTTTTTCTTCGTCGGGGCACCATCGCTGGAGCATTGCCAGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCGA-AG
* * * *
13411577 AACCTGATCGACGACATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGTTGTGCGCAAATGATAT
128 AACCTGACCGACGGCATTGGGGTTCC-GTGATCGGGGGGG-CCGGGGGTTGTGCGCACATGATAT
13411642 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13411707 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
13411772 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * **
13411837 ATGCACACCAACAAAAATACAAGTATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCTGAAAA
* * *
13411902 AATTTTAAAAAA-TCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AATTTTAAAAAATTC-CGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
13411966 TTGCCATGAAACTTCACATACAGGCTTAAGGGA--ATTGTATGAATTTACTAGCCATAAAAATGG
514 TTGCCATGAAACTTCACATGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
13412029 CTTTGGCATGAAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCAAGGCTTG
* * *
13412094 CGCATCCCGTCTCTCTGGCCGGCGTAGTACTCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGC
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
** * * **
13412159 ATATGGAGTTCATTCCCAGTGC-AAGATCAAACTGGACTGAAGGTTGCAGCAGCAGCTTCGGCAG
709 ATATGGAGTTCATTCCCAGT-CTAAGATCGGACCGGACTGAAGGTTGCAGCAGCAGCATCAACAG
* * * * * * *
13412223 GACGTAGAGGGGGACCCGGTCGATCCCTGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
773 CACGCAGAGGGGGACCCGCTCGACCCCCGGCTTACCCATCCTGCCCCTCTGGCCGACTGAGCGCC
* * *
13412288 CGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
838 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
* * *
13412342 GCATATGGAGTTCATTCCAAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGC-GCAGCACATGCTGGG
* *
13412407 CTCGGGCATGTGCTAGTGCCGCAGTTTTCTTCATCGGGGCACCATCG-TCGGAGCATCGTCGAAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCT-GGAGCATCG-CGAAG
* * *
13412471 CACCTTACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGTTGTGCGCACATGATATG
128 AACCTGACCGACGGCATTGGGGTTCC-GTGATCGGGGGGGCCGGGGGTTGTGCGCACATGATATG
* * * *
13412536 CAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCGATCCCTCATCAAACCTTGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13412601 TCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13412666 GGGTACATTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
13412731 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAATTCCTTCTGAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCTGAAAAAA
*
13412796 TTTTAAAAAATTCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACCAGTCGTCTTG
452 TTTTAAAAAATTCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
13412861 CCATGAAACTTCACATGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACATGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
13412926 TGGCATGCAGACATATGAAGATGTGCCTAAACCGACCAACCACCCTATCGATCCAAGGCTTACGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCAAGGCTTGCGC
*
13412991 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
* * ** * * *
13413056 TGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGTAGCAGGATCAATAGCACG
712 TGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAAGGTTGCAGCAGCAGCATCAACAGCACG
13413121 CAGAGGGGGACCCGACT-GACCCCCGGCCTT-CCCATGCC-GCCCCTCTGGCCGACTGAGCGCCC
777 CAGAGGGGGACCCG-CTCGACCCCCGG-CTTACCCAT-CCTGCCCCTCTGGCCGACTGAGCGCCC
13413183 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
839 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
* *
13413236 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCG-CAGCACATGCTGGG
** * * * * * *
13413301 CTTAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCCCTGGAACATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATC-GCGAAGA
* * * *
13413366 ACCTGACCGGCGGCATTGGGGTTTCGATGA-CGGGGGGGCCAGGGGG-TGTGCGTACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCG-TGATCGGGGGGGCC-GGGGGTTGTGCGCACATGATATG
**
13413429 CGATGGGTGCTGGTACTTGGCCCTTATATTATCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13413494 ACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13413559 GGGGACACTTTTTTCAAATGGTCACAAAATCTTCTAAACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
13413624 TGCATGCCAA-AAAAGATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCTGAAAAA
387 TGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCTGAAAAA
*
13413688 ATTTTAAAAAATTCTGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATTCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
13413753 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAAATGGCA
516 GCCATGAAACTTCACATGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
13413818 TTGGCATCCAGAAATATCAATATGTGCCTAAACCAAGCTACCAACCTATCGATCCACA-GCTTGC
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCA-AGGCTTGC
* ** *
13413882 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTACTCG-T--TTT-GTCGGTTGGCTTAGGCA
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
*
13413943 TATGGAGTTCATTCCAAGTCTAAGATCGGA
710 TATGGAGTTCATTCCCAGTCTAAGATCGGA
13413973 TCAGACCGAG
Statistics
Matches: 1473, Mismatches: 141, Indels: 39
0.89 0.09 0.02
Matches are distributed among these distances:
889 46 0.03
890 3 0.00
892 113 0.08
893 727 0.49
894 575 0.39
895 9 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCGAAGAAC
CTGACCGACGGCATTGGGGTTCCGTGATCGGGGGGGCCGGGGGTTGTGCGCACATGATATGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCTGAAAAAATTTT
AAAAAATTCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACATGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCAAGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGA
GTTCATTCCCAGTCTAAGATCGGACCGGACTGAAGGTTGCAGCAGCAGCATCAACAGCACGCAGA
GGGGGACCCGCTCGACCCCCGGCTTACCCATCCTGCCCCTCTGGCCGACTGAGCGCCCACACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
Found at i:13413246 original size:26 final size:26
Alignment explanation
Indices: 13413210--13413262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13413200 GTTGACTTAG
13413210 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
13413236 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
13413262 G
1 G
13413263 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:13414847 original size:26 final size:26
Alignment explanation
Indices: 13414817--13414869 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13414807 GTTGACTTAT
*
13414817 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
**
13414843 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
13414869 G
1 G
13414870 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:13415734 original size:26 final size:25
Alignment explanation
Indices: 13415697--13415748 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13415687 GTTGACTTAG
13415697 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAAT-TAA
*
13415723 GCATACGTAGTTCATTCCCAATTAA
1 GCATACGGAGTTCATTCCCAATTAA
13415748 G
1 G
13415749 ATTGAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAATTAA
Found at i:13418688 original size:863 final size:864
Alignment explanation
Indices: 13413867--13419062 Score: 6072
Period size: 887 Copynumber: 6.0 Consensus size: 864
13413857 ACCAACCTAT
* * * * * * * *
13413867 CGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGGC-GTAGTGCCCGC-CTACTCGTTTTGTCG
1 CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTG-AGCGCCCGCAC-GCTCGTTTCGTGG
* * * * *
13413930 GTTGGCTTAGGCATATGGAGTTCATTCCAAGTCTAAGATCGGATCAGACCGAGGGTTTCGGCAGC
64 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGC
* * * *
13413995 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATAGTCGGAGCA
129 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
* * * * * *
13414060 TTGCCAG-GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGTACGGCCGGGGGGGTGTGCGC
194 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG--GGGCC-GGGGGGTGTGCGC
*
13414124 ACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTC
256 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTC
*
13414189 GAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
320 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
13414254 TGTCTAAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAG
385 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
13414319 AATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCATGTCTGCCAAGTTTGGCGCCAAAACTC
450 AATTTTTTTGTGCATGCC-AACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
13414384 CTTCC-AAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
514 CTTCCGAAAAAAA-TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
13414448 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-C
578 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
13414512 ATAAAAATGGCTTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGAT
643 ATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * * * *
13414577 CCACGACTTGCGCATCCTGTTTCTCAGGCCGACGTTGTGCCTGCCCGCCCGCCCGCCCGCTCATT
708 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG-T-AG--T-CCCACCAGCCCGCTCG--C--T
* * * * * * *
13414642 TCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGAACTAAGGGTTGC
764 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTAC
* * * * * **
13414707 GACAGTAGGATTGGTAGCCCGTAGAGGGGGACCCGGT
829 GATAGCAGGA-TCGTAGCACGCAGAGGGGGACCCGAC
* * * * * * *
13414744 CGATCCCTGGCTTGCGCTTCCCGCCCTTCTGGCCGACTAAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
13414809 TGACTTATGCATACAGAGTTCATTCCCAGTCTAAGCATATGGACTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCT----A-A--G-----A-T--C-G-----GATC-
* **
13414874 GACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTCT
109 G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTCT
** * * * *
13414939 TCGTCGGGGCACCATCGCCCAAGTATCGTCGGGGAACCTGATCGGCGGCATTGGGGTTTCGGCGA
169 TCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
* * * *
13415004 TC---GG--GGGGGTTGTGCGCACACGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGC
234 TCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
13415064 CCTCTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
299 CC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
13415129 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
363 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
13415194 GTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTA
428 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTA
* *
13415259 CCAAGCTTGGGGCCAAAACTCCTTCCG-AAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTC
493 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTT-AAAAAATCCCAAACCGTAAAAAGTTTC
** * * *
13415323 AAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCATGTGAAGGCTTAAGGGAC
557 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
13415388 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAAATTAAGATGTGCCTAAA
622 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAA
* * * *
13415453 CCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCT-GACGG-GCAG---GA--
687 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCACC
* ** * * *
13415511 A-CTCGCTCATTTTGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGA
752 AGCCCGCTCGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG
* * * * *
13415575 ACTGGGGGTTGC-AGTAGCAGGATTGGCAGCACGTAGAGGGGGACCC-AGC
817 ACTGAGGGTTACGA-TAGCAGGA-TCGTAGCACGCAGAGGGGGACCCGA-C
* ** * *
13415624 CGATCCCCAGCTTGTTCATCCCGCCCCTCTGGTCGGCTGAGCGCCGGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
13415689 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGTAGTTCATTCCCAATTAAGATTGA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A-T--C----------G-
*
13415754 ACTAGACCGAGGGTTGCGGAAGCACATGCTAGGG-TCGGGCATGTGCTGGTGCCACATTTTTCTT
110 ----GACCGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
* * * ** *
13415818 CGTCGGGGCACTATCGCCGGAAGCATCGTCGGAGAACCTGATCGGCGGCATTGCGGTTCTTGTGA
170 CGTCGGGGCACCATCGCCGG-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
* *
13415883 TCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACGTGGCCCTTATATT
234 TC--GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
13415948 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCGTAAATAGCATTTGAGATTTTACA
296 GG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
13416013 GGCTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAAT
360 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
13416078 CTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
425 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGT
** * * * *
13416143 CTACCAAGTTTATGGCCAAAAATCCTTCC-AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
490 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAA-TTTAAAAAATCCCAAACCGTAAAAAGT
* * * * *
13416207 TTTAAAAATCGTGAAAAATAAAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
554 TTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*** *
13416272 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACGAAAATATGAAGATGTGGCT
619 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCT
* * * *
13416337 AAACCCACCTGCCACTCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGGCGTAGTGCC
684 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-CC
* * * * * *
13416402 TGACC-GTCCGCCTACTCATTTCGTTGGTTGGCTGAGGCATACTGAGTTCATTCCCAGTCTAAGA
748 -CACCAGCCCG-CT-CGC--TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
13416466 TTGGACCAGACTGAGGGTTACGACAGTAGGATCGACAGCATGCAGAGGGGGACCCGAT
808 TTGGACCGGACTGAGGGTTACGATAGCAGGATCG-TAGCACGCAGAGGGGGACCCGAC
* * * * *
13416524 CGAT-CCCGGGTTGCGCATCCTGCCCCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTAT-GTGGG
1 CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT-TCGTGGG
* * *
13416587 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCA
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCA
* * ** *
13416652 CATGCTGGGCTTGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGG-----T-GCC--ATCA-
130 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * * * *
13416708 C--CGGGGAACCTGACCGGCCGCATTGGGGTTCCGGTGATCGGGGGGGCTGGGGGGGGTGCGCAC
195 CGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC--GGGGGCCGGGGGGTGTGCGCAC
*
13416771 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAA
258 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGA
* *
13416836 GAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
322 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
13416901 TTTGAAATGGGGGCACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
387 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
13416966 TTTTTTTTTTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
452 -TTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* ** * *
13417031 TCCGAAAAAATTTTAAAAAAT-CTGAACCGTAAGAAGTTTCAAAAATCATGAAAAATAGAAATCG
516 TCCGAAAAAAATTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
13417095 AGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATA
581 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * * *
13417160 AAAATGGCATTAGCATG-CAGAATATAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCA
646 AAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * ** * * *
13417224 CAGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGT---GTCTGTCCGCTCGTTTCGTCGGTTGGC
711 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCACCAGCCCGCTCGCTTCGTCGGTTGGC
* ** * *
13417286 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGATAGCTGGA-C
776 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGATAGCAGGATC
*
13417350 GATAGCACACAGAGGGGGACCCGAC
841 G-TAGCACGCAGAGGGGGACCCGAC
* * *
13417375 CGATCCCAGGCTTGCACATCCCGCCCCTCTGG-CGGCTGAGTGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
13417439 TGACTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGA-CTGGACCAAGGGTTGCAGCAGCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCA
* * * * *
13417503 CATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTGTTCATCGGGGCACTATCGCCGAAGCAT
130 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * * *
13417568 CGTCAGAGAACCTGACCGACGGCATTGGGGTTTCGGCAATCGGGGGGGCCGGGGGGTGTGCGCAC
195 CGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC--GGGGGCCGGGGGGTGTGCGCAC
* * * *
13417633 ATGAT-TGCGATGGGTGCTAGTACTTGGCCCTTTATTTTGGGCCCCTATCTCTCATCAAACCTTG
258 ATGATGTGCGATGGGTGCTGGTACTTGGCCC-TTATATT-GGCCCCTATCCCTCATCAAACCTCG
* * *
13417697 AGAACTCACACCCCTTTAAAGAGCATTTTAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGT
321 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
13417762 GTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
386 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
13417827 ATTTTTTTGTGCATGCCAACAAAAACAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCT
451 ATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** * * *
13417892 TATGAAAAAAATTGAAAAAATCCCAAATCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACG
516 TCCGAAAAAAATTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
13417957 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATA
581 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
13418022 AAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCA
646 AAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * ***
13418087 CGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTACCCACCAGCCCGCTCGCTTCATCAACTGG
711 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-CCCACCAGCCCGCTCGCTTCGTCGGTTGG
** * * * *
13418152 CTTAGGCATACGGAGTTCATTCCCAACCTAAGATTGGACCGGGCTGAAGGTTACGGTAGCAAGAT
775 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGATAGCAGGAT
* *
13418217 CAGTAGCATGCAGAGGAGGACCCGAC
840 C-GTAGCACGCAGAGGGGGACCCGAC
* *
13418243 CGATCCCCGGCTTGC-CATCCCGCCCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * * *
13418307 TGACTCAGGCTTACGGAGTTCATTCCTAGTCTAAGATCCGATCGGACTGAGGGTTGCGGTAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
* ** * * ** * *
13418372 ATCCTGCACTCTGGCATGTGCTGCTGCCGTATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATC
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
** * * *
13418437 GTCGGAGAACCTGACCGGCAACATT-GGGTTGCGACGATC-GGGGCCTGGGGGGTGAGCGCACAT
196 GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGCC-GGGGGGTGTGCGCACAT
* * *
13418500 GATGTGCGATGGGTGCTGGTAGTTGGCCATTATATTGGCCCCTATCCCTCATCAAACCTTGAGAA
260 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAA
* * *
13418565 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAATAGCCATTAAGGTGTTT
325 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
13418629 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTT
390 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
13418694 TTTTGTGCATGCCAACCAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCTG
455 TTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * ** * *
13418759 AAAAAATTTTAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCATAAAAAATATAAAACGAGTC
520 AAAAAAATTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
13418824 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATTAATTTACAAGCCATCAAAA
585 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
13418889 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGC
650 TGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
13418954 TTGCGCATCCCGTCCCTCTGGCCGGC-TGAG-CGC-CC-GCACGCTTGTTTCATGGGTTGACTTA
715 TTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTCCCACCAGCCCGCTCGCTTCGTCGGTTGGCTTA
* * *
13419015 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
779 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTT
13419063 GTGGCAGCAC
Statistics
Matches: 3731, Mismatches: 471, Indels: 252
0.84 0.11 0.06
Matches are distributed among these distances:
850 2 0.00
851 151 0.04
852 88 0.02
854 1 0.00
855 3 0.00
856 6 0.00
857 3 0.00
859 62 0.02
860 77 0.02
861 402 0.11
862 426 0.11
863 435 0.12
864 68 0.02
865 28 0.01
866 24 0.01
867 99 0.03
868 193 0.05
869 6 0.00
873 4 0.00
874 58 0.02
875 1 0.00
876 1 0.00
877 74 0.02
878 27 0.01
879 88 0.02
880 172 0.05
881 1 0.00
882 1 0.00
884 8 0.00
887 441 0.12
888 9 0.00
889 5 0.00
890 1 0.00
892 2 0.00
893 2 0.00
894 2 0.00
895 5 0.00
896 164 0.04
897 296 0.08
898 8 0.00
899 85 0.02
900 90 0.02
901 2 0.00
903 50 0.01
904 30 0.01
905 30 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGCCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAAATTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCACCAGCCCGCTCGCTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGATAGCAGGATCGTAGC
ACGCAGAGGGGGACCCGAC
Found at i:13419601 original size:703 final size:701
Alignment explanation
Indices: 13418243--13419778 Score: 2182
Period size: 703 Copynumber: 2.2 Consensus size: 701
13418233 AGGACCCGAC
* * * *
13418243 CGATCCCCGGCTTGC-CATCCCGCCCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGTGGGT
1 CGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * * *
13418307 TGACTCAGGCTTACGGAGTTCATTCCTAGTCTAAGATCCGATCGGACTGAGGGTTGCGGTAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTGAGGGTTGTGGCAGCAC
* ** * * *
13418372 ATCCTGCACTCTGGCATGTGCTGCTGCCGTATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATC
131 ATACTGCACTCTGGCATGTGCTGCTGCCACATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATC
* * * *
13418437 GTCGGAGAACCTGACCGGCAACATTGGGTTGCGACGATCGGGGCCTGGGGGGTGAGCGCACATGA
196 GCCGGAGAACCTGACCGACAACATTGAGTTCCGACGATCGGGGCCTGGGGGGTGAGCGCACATGA
* **
13418502 TGTGCGATGGGTGCTGGTAGTTGGCCATTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACT
261 TGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
13418567 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTGCTGCCAATAGCCATTAAGGTGTTTGAA
326 CACACCCCCTTAAAGAGCATTCGAGATTTTACAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
*
13418632 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTT
391 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* **
13418697 TGTGCATGCCAACCAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCTGAAA
456 TGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAA
* * *
13418762 AAATTTTAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCATAAAAAATATAAAACGAGTCATC
521 AAATTTTAAAAAATCTCAAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCATC
* * *
13418827 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATTAATTTACAAGCCATCAAAATGG
586 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATCAAATTACAAGCCATCAAAATGG
13418892 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
651 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
13418943 TGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCATGGGT
1 CGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
13419008 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAC
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTGAGGGTTGTGGCAGCAC
** * *
13419073 ATACTGGGCT-TCGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCGTTGGAGCAT
131 ATACTGCACTCT-GGCATGTGCTGCTGCCACATTTTTCTTCGCCAGGGCACCATCGTCGGAGCAT
**** * *
13419137 CGCCGGAGAACCTGACCGATGGTATTGAAGTTCCGACGATGGGGGCC-GGGGCGGTGTGCGCACA
195 CGCCGGAGAACCTGACCGACAACATTG-AGTTCCGACGATCGGGGCCTGGGG-GGTGAGCGCACA
*
13419201 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAG
258 TGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCC-TATCCCTCATCAAACCTCAAG
*
13419266 AACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCTAATAGCCATTAAAGTGT
322 AACTCACACCCCCTTAAAGAGCATTCGAGATTTTACA-GTTTGCTGCCAATAGCCATTAAAGTGT
*** * *
13419331 CTGAAATGGGGATGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAAT
386 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
** * * ** * *
13419396 TTTTTTGTGCAT-CGTATAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTCCTTC
451 TTTTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTC
* * * *
13419460 CAAAAAAATTTTAAAAAATCTCGAATCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
516 CAAAAAAATTTTAAAAAATCTCAAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAG
* *
13419525 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATCAAATTACAAGCCAT-AA
581 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATCAAATTACAAGCCATCAA
*
13419589 AAGTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
646 AA-TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
13419646 CGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGT
1 CGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGC-T-GAG--CGCCCGCACGCTCGTTTCGT
* * * *
13419711 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCCGATCAGACTGAGGGTTGTGACA
62 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTGAGGGTTGTGGCA
13419776 GCA
127 GCA
13419779 GGATCGACAG
Statistics
Matches: 734, Mismatches: 91, Indels: 15
0.87 0.11 0.02
Matches are distributed among these distances:
700 14 0.02
701 176 0.24
702 72 0.10
703 297 0.40
704 96 0.13
705 2 0.00
707 77 0.10
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (701 bp):
CGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTGAGGGTTGTGGCAGCAC
ATACTGCACTCTGGCATGTGCTGCTGCCACATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATC
GCCGGAGAACCTGACCGACAACATTGAGTTCCGACGATCGGGGCCTGGGGGGTGAGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACT
CACACCCCCTTAAAGAGCATTCGAGATTTTACAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAA
AAATTTTAAAAAATCTCAAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCATC
TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATCAAATTACAAGCCATCAAAATGG
CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
Found at i:13419912 original size:26 final size:26
Alignment explanation
Indices: 13419882--13419960 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
13419872 GTTGACTTAG
13419882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13419908 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13419934 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13419960 G
1 G
13419961 ATCGGATCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13421568 original size:26 final size:26
Alignment explanation
Indices: 13421538--13421590 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13421528 GTTGACTCAG
* *
13421538 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13421564 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13421590 G
1 G
13421591 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13422463 original size:25 final size:26
Alignment explanation
Indices: 13422435--13422486 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
13422425 GTTGACTTAG
* *
13422435 GCATACGGAGTTTA-TCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
13422460 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
13422486 G
1 G
13422487 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:13423129 original size:26 final size:26
Alignment explanation
Indices: 13423093--13423145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13423083 GTTGACTTAG
*
13423093 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13423119 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13423145 G
1 G
13423146 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13425006 original size:706 final size:702
Alignment explanation
Indices: 13423119--13425292 Score: 2854
Period size: 705 Copynumber: 3.1 Consensus size: 702
13423109 CCTAGTCTAA
* * * *
13423119 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
13423184 CTCGGGCAAGTGCTGGTGTCGCATTTTTTTTCGTCAGGGCACCATCGTCAGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCAGAG-A--ACC--TG-
* * *
13423249 ACCTGACTGACAGCTTTGGGCTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGAGCG
125 ACC-GGC-GACA---TTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
13423314 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
185 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13423379 CCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
250 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
13423444 GGACAAC-TTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTCAGCTTAAATTTTTTGT
315 GGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTGT
* **
13423508 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCAAAAAAAT
378 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAT
* * *
13423573 TTTAAAAAATC-CTAGACCGCAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
443 TTTAAAAAATCTCGA-ACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
13423636 CCATTAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGATTTTACAAGCCATAAAAATGGAAT
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAAT
** * * * * *
13423701 CAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACAACCTTATCGATCCACGGCTTACGC
572 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** ** *
13423766 ATCCCGTCTCTCTCGCCGGCGTAGTGCCCGCCCAACCGCCCACCCATTCATTTTGTCGGTTGGCT
637 ATCCCG--TCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCT
13423831 TAG
700 TAG
* * * ** * *
13423834 GCATGCGAAGTTCATT-CCAGTCTAAGATCAGACCGGGGTGAGGGTTGCGATAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
13423898 CTCGGGCATGTGCTGGTTCTGTATTTTTCTTCGCCTGGGCACCATTGCCAGAGAGCATGACCAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCAGAGAACCTGACCGGC
* ** *
13423963 -AGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
131 GA-CATTGGGGTTCCGACGATC-AGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * **
13424027 TGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTTGCACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * **
13424092 ATAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCTGTTAAAGTG-CTTGAAATGGGGACACT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACT
* *
13424156 TTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCAA
322 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* * *
13424221 ACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGACC-AAACTCCTTCCAAAAAATTTTTAAAA
386 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAAA
* * * *
13424285 AATCTTGAGCCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTGGCCATGAAA
450 AATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
** *
13424350 CTTTGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGAATTGGCATGT
515 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGT
* *
13424415 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTC
580 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
13424480 TCTCGACCGGCATAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTTGTCGGTCGGCTTAG
645 TCTCG-CCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAG
* * *
13424539 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
* * *
13424604 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCAGAGAACCTGACCGGC
* **
13424669 GACATTGGGGTTCCGACGATCAACGAAGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 GACATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
13424734 GTAGTTGGCCCTTATATTGGCCCCCTAT-CCTCCGTCAAACCTTGAGAACTCACACCCCCTGAAA
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACTCACACCCCCTTAAA
13424798 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
13424863 TTTCAAATGGTCAGAACATCTTGTACACTTCGAGTTTTTAGCTGACATTTTTTATGCATGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAAC
* * *
13424928 AAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAATTTTAAAAAA
* * *
13424993 TCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACT
452 TCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * **
13425058 TCACGTGAAGGCTTAAGGGCCCATTGTACGAATTTACAAGCCATAAAAAAGGCATTGGCACATAG
517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGTAG
* *
13425123 AAATATGAAGACGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCAG-ATCCCGTCT
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCT
* * * * ** *
13425187 CTCTGGCTGACGTAGTGCCCACCCGCCCTCCCTTCCGCTCGTTTCGTCGGTTGGCTTAG
646 CTC--GCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAG
* * * * *
13425246 GCATACGGAGTTCATTCCCAGACAAAGATTGGACCGGGCCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
13425293 ACGATAATAG
Statistics
Matches: 1262, Mismatches: 177, Indels: 48
0.85 0.12 0.03
Matches are distributed among these distances:
703 13 0.01
704 32 0.03
705 553 0.44
706 477 0.38
707 84 0.07
708 4 0.00
709 1 0.00
711 1 0.00
713 1 0.00
714 82 0.06
715 14 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (702 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCAGAGAACCTGACCGGC
GACATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAAATCTC
GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGTAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCGC
CGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAG
Found at i:13425443 original size:26 final size:26
Alignment explanation
Indices: 13425405--13425455 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13425395 GTTGACTTAG
13425405 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATTCTAAGTCTAA
* *
13425431 GCATACGGTGTTCATTCTCAGTCTA
1 GCATACGGAGTTCATTCTAAGTCTA
13425456 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTAAGTCTAA
Found at i:13426341 original size:26 final size:26
Alignment explanation
Indices: 13426305--13426357 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13426295 GTGGACTTAG
*
13426305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
13426331 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
13426357 G
1 G
13426358 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:13426538 original size:900 final size:890
Alignment explanation
Indices: 13424539--13427330 Score: 3664
Period size: 900 Copynumber: 3.1 Consensus size: 890
13424529 GTCGGCTTAG
* **
13424539 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCACATGCTGGG
*
13424604 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA-T--C---G--C-CGGAGAAC
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCAGAGATCGCGGAGAAC
* ** **
13424660 CTGACCGGCGACATTGGGGTTCCGACGATCAACGAAGCCGGGGGGTGTGCGCACATGATGTGCGA
130 CTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGT-CGCACATGATGTGCGA
* * *
13424725 TGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTAT-CCTCCGTCAAACCTTGAGAACTCACAC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACTCACAC
*
13424789 CCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
13424854 GGACACTTTTTTCAAATGGTCAGAACATCTTGTACACTTCGAGTTTTTAGCTGACATTTTTTATG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTT-TG
* * *
13424919 CATGCCAACAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAAT
* *
13424984 TTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
451 TTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
13425049 AATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTACGAATTTACAAGCCATAAAAAAGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
13425114 GGCACATAGAAATATGAAGACGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCAG-
580 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GC
* * * * *
13425178 ATCCCGTCTCTCTGGCTGACGTAGTGCCCACCCGCCCT-CCCTTCCGCTCGTTTCGTCGGTTGGC
644 ATCCCGTCTCTCTGGCCGGCGTAATG-CC-CGC-CCCTGCCC-GCCG-TCGTTTCGTCGGTTGGC
* * * * **
13425242 TTAGGCATACGGAGTTCATTCCCAGACAAAGATTGGACCGGGCCGAGGGTTACGATAATAGGATC
704 TTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTT-GGGCAATAGGATC
* * * ** *
13425307 GGCAGCATGCAGAAGGGGACCCGACTGATCCCCAGCTTACGCATCCAACCCCTCTGGCCGGCTGA
768 GACAGCATGCAGAAAGGGACCCGACCGATCCCCAGCTTGTGCATCCAGCCCCTCTGGCCGGCTGA
* * **
13425372 GCGCCTGCACAG-TTG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTAAGTCTAA
833 GCGCCTGCAC-GCTCGTTTTC--GGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * **
13425431 GCATACGGTGTTCATTCTCAGTCTATGATCGGACCGGACCGAGGGTTGTGGTAACACATGCCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CGCAGCACATGCTGGG
* * * * *
13425496 CTTGGGCATGTGCTGGTGCTACATTTTTCTTCACCCGGGCACCATCGCCAGAGCATTGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCAGAG-ATCG-CGGAGA
* * * *
13425561 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGTGGTGTCGCACATGATGTGCG
128 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTCGCACATGATGTGCG
*
13425626 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
13425691 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
13425756 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT--G
* * * **
13425821 CAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCAGAAAAACG
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAAT
* *
13425886 TTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAGTCATGAAAAATAAAAAACGAGTCATCTTGC
451 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA-TCATGAAAAATAGAAAACGAGTCGTCTTGC
*
13425950 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
13426015 GGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGTCTTGCGCT
580 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
13426080 TCCCGTCTCTCTGGCCGGCGTAATGCCCGCCTTCCTGCCCGCCCGTTCGTTTCGTTGGTTGGCTT
645 TCCCGTCTCTCTGGCCGGCGTAATGCCCGCC--CCTGCCCG-CCG-TCGTTTCGTCGGTTGGCTT
*
13426145 AGGCATACGGAGTTCATTCCCAGTGC-AAGATCAGACCGGACCGAGGGTTGGGCAATAGGATCGA
706 AGGCATACGGAGTTCATTCCCAGT-CAAAGATCGGACCGGACCGAGGGTTGGGCAATAGGATCGA
* * * *** * *
13426209 CAGCATGTAGAAAGGGACCCGACCAATGCTTGGCTTGTACATCCCGCCCCTCTGGCCGGCTGAGC
770 CAGCATGCAGAAAGGGACCCGACCGATCCCCAGCTTGTGCATCCAGCCCCTCTGGCCGGCTGAGC
*
13426274 GCCTGCACGCTCGTTTTACGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GCCTGCACGCTCGTTTT-CGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13426331 GCATACGGAGTTCATTACCAGTCTAAGATCGGATC-GAAACGAGGGTTGCAGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGC-GCAGCACATGCTGG
*
13426395 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATTGCCAGAGAATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCAGAG-ATCG-CGGAG
* * * *
13426460 AACCTGACCGGTGGCATTGGGGTTTCGATGATC-GGGGGGCCGGGGGGTATACGCACATGATGTG
127 AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGT-CGCACATGATGTG
* * * * *
13426524 CGATGGGTGCTGGTACTTGACCTTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGACCACAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13426589 ATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTC-GAAAA
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAA
* * *
13426653 TGGGGACACTTTTCTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTCTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATT-TTT
* * *
13426718 TTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAACTCCTTCCGAAAA
383 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAA
* * * *
13426783 AATTTTTAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
448 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
13426848 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGAC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13426913 ATTGGCACATAGAAATATGAAGATGTGCTTAAACCCACCTACCACCATATCGATCCACGGCTTGT
577 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13426978 ACATCCCGTCTCTCTGGCCGGCGT-A-G--CG-CCC-GCCCG-C-TCGTTTCATGGGTTGGCTTA
642 GCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCCTGCCCGCCGTCGTTTCGTCGGTTGGCTTA
* * * **
13427035 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
707 GGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTTG-GGCAATAGGATCGAC
* * ** * * * *
13427100 AGCA--CACAGAGGGCAACCCGGTCGATCCCCAGCTTGTGCATCCTGCCCTTCTGGCCAGCCGAG
771 AGCATGCAGAAAGGG--ACCCGACCGATCCCCAGCTTGTGCATCCAGCCCCTCTGGCCGGCTGAG
* ** *
13427163 CCCCTGCACGCTCG-TTTCGTTGGTCGACTTAGGCATGTGGAGTTAATTCCCAGTCTAA
834 CGCCTGCACGCTCGTTTTCG--GGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
13427221 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGG
* * **
13427286 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT
13427331 CACCATACCC
Statistics
Matches: 1669, Mismatches: 191, Indels: 82
0.86 0.10 0.04
Matches are distributed among these distances:
888 9 0.01
889 65 0.04
890 197 0.12
891 2 0.00
892 91 0.05
893 6 0.00
894 2 0.00
895 1 0.00
896 1 0.00
897 2 0.00
898 2 0.00
899 21 0.01
900 511 0.31
901 442 0.26
902 267 0.16
903 50 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCAGAGATCGCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAA
AAAATCTCGAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAATGCCCGCCCCTGCCCGCCGTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTTGGGCAATAGGATCGACAGCATGCAGA
AAGGGACCCGACCGATCCCCAGCTTGTGCATCCAGCCCCTCTGGCCGGCTGAGCGCCTGCACGCT
CGTTTTCGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13427737 original size:26 final size:26
Alignment explanation
Indices: 13427708--13427760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13427698 GTTGACATAG
13427708 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
13427734 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13427760 G
1 G
13427761 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13427810 original size:513 final size:501
Alignment explanation
Indices: 13426851--13427844 Score: 1350
Period size: 513 Copynumber: 2.0 Consensus size: 501
13426841 GTTGTCTTGC
* *
13426851 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGACATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGACATT
* * * *
13426916 GGCACATAGAAATATGAAGATGTGCTTAAACCCACCTACCACCATATCGATCCACGGCTTGTACA
66 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACAGCTCGCACA
* *
13426981 TCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
131 TCCCGTCTCTCTGGACGGCGTAGCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * *
13427046 TTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAG
196 TTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAACACACAGAG
* * **
13427111 GGCAACCCGGTCGATCCCCAGCTTGTGCATCCTGCCCTTCTGGCCAGCCGAGCCCCTGCACGCTC
261 GGCAACCCGATCGATCCCCAGCTTGCGCATCCCACCCTTCTGGCCAGCCGAGCCCCTGCACGCTC
* * ** *
13427176 GTTTCGTTGGTCGACTTAGGCATGTGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
326 GTTTCGTGGGTCGACATAGGCATACGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCA
** *
13427241 GTCTAAGATTGGACCAGACCGAGGGTTACTGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
391 GTCTAAGATCAGACCAGACCGAGGGTTACTGCAGCACATGCTGGGCTCGAGCATGTGCTAGTGCC
*
13427306 GCATTTTTCTTCGTCGGGGCACCATCACCATACCCCGAGAACTCAT
456 GCATTTTTCTTCATCGGGGCACCATCACCATACCCCGAGAACTCAT
**
13427352 CATGAAACTTTGCGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGA-AT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT-GACAT
** * *
13427416 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTCGCGC
65 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACAGCTCGCAC
* * *
13427481 TTCCCGTCTCTCTGGACGGCGTAGTGCCCGCGCGCCTACCCGCCCGCTCGTTTCGTCGTTTGGCT
130 ATCCCGTCTCTCTGGACGGCGTA--------GCG----CCCGCCCGCTCGTTTCATCGGTTGGCT
*
13427546 TAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTGTGGCAGCAGGATCG
183 TAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCG
** * * **
13427611 ACAACACGTAGAGGG-AGACCCGATCGATCCTC-GACTTGCGCATCCCACCCTTCTGGCCGGTTG
248 ACAACACACAGAGGGCA-ACCCGATCGATCCCCAG-CTTGCGCATCCCACCCTTCTGGCCAGCCG
* * *
13427674 AGCGCCC-GTACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAATCTAAGCAT
311 AGC-CCCTGCACGCTCGTTTCGTGGGTCGACATAGGCATACGGAGTTAATTCCCAATCTAAGCAT
* * *
13427738 ATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-GTGACAGCACATGCTGGGCTC
375 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACTG-CAGCACATGCTGGGCTC
* * *
13427802 GGGCATGTGCTAGTGCCGTATTTTTCTTCATTGGGGCACCATC
439 GAGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATC
13427845 GCCGGAGAAC
Statistics
Matches: 426, Mismatches: 50, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
501 135 0.32
502 2 0.00
509 3 0.01
512 4 0.01
513 279 0.65
514 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (501 bp):
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGACATT
GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACAGCTCGCACA
TCCCGTCTCTCTGGACGGCGTAGCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAACACACAGAG
GGCAACCCGATCGATCCCCAGCTTGCGCATCCCACCCTTCTGGCCAGCCGAGCCCCTGCACGCTC
GTTTCGTGGGTCGACATAGGCATACGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCAGACCGAGGGTTACTGCAGCACATGCTGGGCTCGAGCATGTGCTAGTGCC
GCATTTTTCTTCATCGGGGCACCATCACCATACCCCGAGAACTCAT
Found at i:13428880 original size:25 final size:25
Alignment explanation
Indices: 13428842--13428889 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
13428832 ACCACCCTAT
* *
13428842 CGATCCTCGGCTTGCACATCCCGTC
1 CGATCCCCGACTTGCACATCCCGTC
*
13428867 CGATCCCCGACTTGCGCATCCCG
1 CGATCCCCGACTTGCACATCCCG
13428890 CCCCTCTGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.12, C:0.46, G:0.21, T:0.21
Consensus pattern (25 bp):
CGATCCCCGACTTGCACATCCCGTC
Found at i:13428976 original size:26 final size:26
Alignment explanation
Indices: 13428940--13428992 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13428930 GTTGACTTAG
13428940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13428966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13428992 G
1 G
13428993 ATCGGACCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13429866 original size:26 final size:26
Alignment explanation
Indices: 13429836--13429888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13429826 GTTGACTTAG
*
13429836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13429862 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13429888 G
1 G
13429889 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13430783 original size:26 final size:26
Alignment explanation
Indices: 13430747--13430796 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13430737 GACTTAGGCT
*
13430747 TACGAAGTTCATTCGCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
*
13430773 TACGTAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
13430797 ATCGGACCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:13431239 original size:906 final size:900
Alignment explanation
Indices: 13428867--13431884 Score: 4304
Period size: 898 Copynumber: 3.4 Consensus size: 900
13428857 ACATCCCGTC
* * *
13428867 CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
1 CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
13428932 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
13428997 GACCACATCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTATTCTT
131 GACCACACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTATTCTT
* * * * * * * * *
13429062 CGGCGGGGCACCATCACCGGAGCATCGTCAGAGAGCTTGACCGATGGCATTGGGGTTCCAACGAT
196 CGTCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
**
13429127 CGGGGGGGCCGGCAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
261 C-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
13429192 CCCGTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGT
325 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGT
*
13429257 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACAATTTTTTCAAATGGTCACAAAATCTT
390 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACAATTTTTTCAAATGGTCACAAAATCTT
13429322 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
455 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
13429387 CCAAGTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAGAAAATCCCGAACCGCAAAAAGTTTCAA
520 CCAAGTTAGGGCCAAAACTCCTTCCAAAAAAATTTTA-AAAATCCCGAACCGCAAAAAGTTTCAA
13429452 AAATCATGAAAAAT-CGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
584 AAATCATGAAAAATAC-AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
13429516 ATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
648 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* **
13429581 CCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTG-CC-T-
713 CCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTC
* * * *
13429643 GCC-CT-CTCGTCCGCTCATTTCATCAATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAACA
778 GCCGCTCCACGTCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * * *
13429706 TCAGACCAGACTGAGGGTTGTGGTGGCAGGATCGACAGCACACTGTGGGGGAGCCGAT
843 TCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGGGGGACCCGAT
* * * * * * * *
13429764 CGATCCCCAGCTTGCGGATCCCACCCCTTTGGCC-GCTGAGCGCCCGCCCGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* *
13429828 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
*** * * * * *
13429893 GACTGGACCGAGGGTAGCGATAGCACATGCTGGGCTCGGGCATGTGCTAGTGCTACATTTTTCTT
131 GACCACACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTATTCTT
* * * * * * *
13429958 CATCGGGGCACCATCGCCGGAGCATCAAC-AAGGAACCTGACCGACAGCATTGGGGTTCTGGCGA
196 CGTCAGGGCACCATCGCCGGAGCATCATCGGA-GAACCTGACCGACGGCATTGGGGTTCCGACGA
*
13430022 TCGGGGGAGCCGGAGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
260 TCGGGGG-GCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
13430087 AGTG-CCCTATCCGTCATCAAACTTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
323 -G-GCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTAC
* * * *
13430151 AGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
386 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACAATTTTTTCAAATGGTCACAAAA
* * * ** * * *
13430216 TCTTGTACACTTCAACTTTTTACCTGAATTTTTTTGTGCACACCAACAAAAACAGAAGGATCATG
451 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
13430281 TCCACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGT
516 TCTACCAAGTTAGGG-CCAAAACTCCTTCCAAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGT
* * *
13430346 TTCAAAAATCATGAAAACTACAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
579 TTCAAAAATCATGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
13430411 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACGTGCAT
644 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
*
13430476 AAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCC
709 AAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCC
* * * * *
13430541 CGTCCGTCCGCTCGCCCGTCCGCTCGTTTCATCGGTTGGCATAGGCATACGGAGTTCGTTCCCAG
774 CGT-CG-CCGCTC-CACGTCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAG
** * * * ** *
13430606 TCTAAGATCAGACC-GAACCAAGGGTTGCGGTAGTAGGATTGGTATCACACAGAGGGGGACCCGA
836 TCTAAGATCAGACCAG-ACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGGGGGACCCGA
*
13430670 C
900 T
* * * * * * *
13430671 CGATCCCTGGCTTATGCATCCCGTCCCTCTGGCCGGCTAACCGCCCGCATGCTCATTTTGTGGGT
1 CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* * * *
13430736 TGACTTAGGCTTACGAAGTTCATTCGCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
13430801 GACCACACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTATTCTT
131 GACCACACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTATTCTT
* * * *
13430866 CGTCAGGGCACCATCGTCGGAGTATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
196 CGTCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
*
13430931 CGGGGGGCCGGGGGGATGTGCGCCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
261 CGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
13430996 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGT
325 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGT
* * * * *
13431061 TTGCTGTCGGTAGCCATTAAAGTGTCTGAAATGTGGACAATATTTTCAAAAGGTCCCAAAATCTT
390 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACAATTTTTTCAAATGGTCACAAAATCTT
13431126 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
455 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
13431191 GCAAGTTCGGAGCCAAAACACCTTCCAAAAAAATTTTAAAACATCCCGAACCGTAAAAAGTTTCA
520 CCAAGTTAGG-GCCAAAACTCCTTCCAAAAAAATTTTAAAA-ATCCCGAACCGCAAAAAGTTTCA
*
13431256 AAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
583 AAAATCATGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
13431321 ATTGTATGAATTTACAAGCCATAAAAATGACATTGACATGCAGAAATATGAAGATGTGCCTAAAC
648 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * **
13431386 CCACCTACCACCATATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTTGGTGTAGTGCCCG-C
713 CCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTC
* *
13431450 -CCGC-CCAC--CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGA
778 GCCGCTCCACGTCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * *
13431511 TC-GAACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCGAT
843 TCAG-ACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGGGGGACCCGAT
* * * * *
13431569 CGATCCCCGGCTTGTGCATCCCGCCCCTTTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* *
13431634 TAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCC
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
13431699 GACCAGATCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTATTCTT
131 GACCACACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTATTCTT
* * * * * * * *
13431764 CGTCAGGGCACCATCGTCAGAGTATCATTGGAGAACCTGACCGGCGGCATTGGGATTCCGGCAAT
196 CGTCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * * *
13431829 CGGGGGGTCAGGGGGTATGCGCCCATGATGTGCGATGGGTGCCGGTACTTGGCCCT
261 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
13431885 AAAAAGTTTC
Statistics
Matches: 1868, Mismatches: 228, Indels: 50
0.87 0.11 0.02
Matches are distributed among these distances:
895 6 0.00
896 198 0.11
897 117 0.06
898 519 0.28
899 228 0.12
900 6 0.00
901 2 0.00
902 4 0.00
903 1 0.00
904 3 0.00
905 7 0.00
906 411 0.22
907 170 0.09
908 195 0.10
909 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (900 bp):
CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCACACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTATTCTT
CGTCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACAATTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCATGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCGCC
GCTCCACGTCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
GACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGGGGGACCCGAT
Found at i:13431678 original size:26 final size:26
Alignment explanation
Indices: 13431642--13431694 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13431632 GTTAACTTAG
13431642 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13431668 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13431694 G
1 G
13431695 ATCCGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13433208 original size:26 final size:26
Alignment explanation
Indices: 13433172--13433223 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13433162 TTAACTTAGC
*
13433172 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
13433198 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
13433224 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAG
Found at i:13434102 original size:26 final size:26
Alignment explanation
Indices: 13434073--13434125 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13434063 GTTGACTTAG
*
13434073 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
13434099 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13434125 G
1 G
13434126 ATCGGGCAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13434652 original size:903 final size:900
Alignment explanation
Indices: 13431884--13442162 Score: 8791
Period size: 905 Copynumber: 11.3 Consensus size: 900
13431874 TACTTGGCCC
* *
13431884 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCATGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
13431949 ACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACT-CAGAAATATGAA
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAA
* ** * * *
13432013 GATGTG-CTAAACCCACCTACCACCTTATCGATCCACGGCTTAAGCATCCCATTTTTCTGGCC-A
130 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * *
13432076 GCGTAGT-CCCTGCCCGGCCGCCCGTCCGCTCGTTT-ATCGATTGGCTTAGGCATACGGAGTTCA
195 -CGTAGTGCCC-GCCCGCCCGCCC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
13432139 TTCCCAGTCTTAGATCAGATCAGACCGAGGGTTACGATAGCATGATCGGTAGCACGTAGAGGGGG
256 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGG
* * * * * * *
13432204 ACCCGGCCGATCCCCTGCTTGCGCAT-TCTCCCCTCTGGCTGGCTGAGCGCCCGTACACTCATTT
321 ACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTT
* * * **
13432268 CGTGGGTTGACCTAGTCATAC-GAAGTTCATTCCCAGTCTAAGCATGCAAAGTTCATTCCCAGTC
386 CGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
13432332 TAAGATAGGATCA-GATCGAGGGTT--ATGACAGCACATGCTGGGCTAGGGCATGTGCTAGTACC
450 TAAGATCGGA-CAGGACCGAGGGTTGCA-G-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * * *
13432394 GCATTTTTCTTCGCCAGGG---CA---C----CATCGTCGGAGAACCTGATCGACGGTATTGGAG
512 GTATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * * * * * **
13432449 TTCTGGTGGTCGGGGGGGCCGGGGGGTGTGCGCACATGGTGTACGTTGGGTGCTCATACTTGGCC
577 TTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
13432514 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAG
642 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
13432579 ATTTTACAGCTTTGCTGCGAGTAGCCATTAAAGTGTTTGAATTGGGGACACTTTTTTCAAATGGT
707 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
13432644 CACAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTTTGTGCATGCCGAA-AAAAATACAA
772 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC-AACAAAAATACAA
* * * * ** * * *
13432708 GGATAACATCTA-AAACATTTGGGGCCAAACCTACTTCCAAAAAAATTTTAAAAAATCCCGAACC
836 GGATCACGTCTACCAA-GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
13432772 G
900 G
* * * * *
13432773 TAAAAAGTTTTAAAAATCATGAAGAATAGATAACGAGTTGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
13432838 GCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*** * *
13432903 ATGTGCCTAAACCCACCTACCACCCTATCGATCCATTACTTTCGCATGCCGTCTCTCTGGCC-AG
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-
* * * * *
13432967 CATAGTGCCCGCCCGCCCG--CCTGCTCGTTCCGTCAGTTGGCTTAGGGATACGGAGTTCATTCC
195 CGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
13433030 CAGTCTAAGATCATACCAGACTGAGGGTTACAGTAGTAGGATTGGCAGCACGTAGAGGGGGAGCT
260 CAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCC
** * * * * *
13433095 GGTCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTG
325 GACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *
13433160 GGTTAACTTAGCCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
390 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
13433225 TTGGACCA-GACCAAGGGTTGC-GACAGCAGATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTT
455 TCGGA-CAGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
* * * ** *
13433288 TACTTCATCGGGGCACCATCCCCGGAGCATCACCGGAGAACCTGACCGGCGTCATTGGGGTTCCG
518 TTCTTCGTCGGGGCACCAT-CTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * * * *
13433353 GCGATCGCGGGGGTCGGGGGGTGTGTGCACATGATGTACGATGGGTGATGGTACTTGGCCCTTAC
582 GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
13433418 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
647 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
13433483 ACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAA
712 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
13433548 AATCTTGTACAC-TCTGAGTTTTTAGCTGAATT-TTTTTTCCATGCCAACAAAAATACAAGGATC
777 AATCTTGTACACTTC-GAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
13433611 ACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTCTAAAAAATCTCGAACCA
841 ACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
* * * * ** *
13433671 CAAAAAGTTTCAAAAATCATGTAAAATAGAAAATGAGTCACCTTGCCATGAAACTTCACGTGCAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
13433736 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*
13433801 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGAC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* *
13433866 GTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGCA-TTCATT
196 GTAGTGCCCGCCCGCCCG-CC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGTTCATT
* * * * ** *
13433930 CCTAGTCTAAGATCAGACCAAACTGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAAGGGGAC
258 CCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGAC
* * * * * *
13433995 CCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCTGGCTAAGCACCCGCATGCTCGTTTTG
323 CCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCG
* *
13434060 TGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
388 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
13434125 GATCGGGCAGGACCGAGGGTTGCAGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCACATTT
453 GATCGGACAGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
* ** * **
13434190 TTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTTG
518 TTCTTCGTCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
13434255 GCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTA
582 GCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
13434320 TATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
13434385 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
13434450 AAATTTTGTACACTCCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
* * **
13434515 ACGTCTATCAAGTTTGGGGTCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTAAACCG
841 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
**
13434575 TAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
13434639 GCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* **
13434704 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGTTTTGCGCATCCCGTCTCTCTGGCCGAC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* ** *
13434769 GCAGTGCCCGCTTGCCCG--CCCGCTCGTTTCGTCGGTTGGCTTAGACATACGGAGTTCATTCCC
196 GTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * *
13434832 AGTCTAAGATCAGACCGGACTGAGGATTGCCGCAGCAGGATCGACAGCACGCATAGGGGGACCCG
261 AGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
* ** ** * * * * *
13434897 ACCGATCCCC-GACTTGCGCATCTCGCCCCTCTCACCAGCTAAACGCCTGCACACTCGTTTCATG
326 ACCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * ** ** *
13434961 GGTTGACTTAGGCATACGGAGTTGATTGTCAGTCTAAGCATATAGAGTTCATTCCTAGTCTAAGA
390 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
13435026 TCAGACCA-GACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTT
455 TCGGA-CAGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
* *
13435090 TCTTCGTCGGGG---CA---C----CATCGTCGGAGAACCTGTCCGGCGGCA-TGGGCGTTCCGA
519 TCTTCGTCGGGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG-GTTCCGG
*
13435144 CGATC-GGGGGGCTCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
583 CGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
13435208 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGGATTTGAGATTTT
647 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
13435273 ACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAA
712 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
13435338 AATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCA
777 AATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
13435403 TGTCTGCCAAGTTTGGGG-CAAAAACTCCTTTCGAAAATATTTTAAAAAATCCCGAACCG
842 CGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
* * *
13435462 CAAAACGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
13435527 GGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
13435592 ATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTTTGTCAGGCCGAC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * * *
13435657 CTAATGCCTTTCTGCCTGCCCG--CCCGTTCATTTCGTCGGTTGGCCTAGGCATACGGAGTTCAT
196 GTAGTGCC---C-GCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
13435720 TCCCAGTCTAAGATC-GAATCGGA-TAGAGGGTTAAGGCAACAGGA-CTAGCAGCACATAGAGGG
257 TCCCAGTCTAAGATCAG-ACCAGACT-GAGGGTTACGGTAGCAGGATC-GGCAGCACGTAGAGGG
* * * * *
13435782 GGACCCGACCGATCCTCAGCTTGCGCATACCGCCCCTCTAGCTGGCTGAGTGCCCGCACACTCGT
319 GGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGT
* *
13435847 TTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGT
384 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * * * *
13435912 CTAAGATCAGACTGGACCGAGGATTGCGGTAGCACATGCGGGGCTTGGGCATGTGCTGGAGCCGC
449 CTAAGATCGGACAGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
* * * *
13435977 ATTTTTCTTTGTCGGGGCACCATCATCGGAACATCGTTGGAGAACCTGACCGGCGACATTGGGGT
514 ATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* **
13436042 TCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTTTTTGGC
578 TCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
13436107 CCTTATATTGGCCCCCTATCCATCATCAAACCTCAAAAACACACACCCCCTTAAAGAGCATTTGA
641 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
13436172 GATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
706 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
13436237 TCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTGCGA-GCCAAAAAAAATAAA
771 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC-ATGCCAACAAAAATACA
* * *
13436301 ATGATCACGTCTGCCAAGTTTGGGGCCAAAAATCCTTCCGAAAAATTTTTAAAAAATCTCGAACC
835 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
13436366 G
900 G
** *
13436367 CT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
1 -TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* ** *
13436431 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACACAAAAATATGAA
65 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * *
13436496 GATATGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGGATCCCGTCTCTCTGGTCGA
130 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * *
13436561 CGTAGTGCCCGCCCGCCCACTTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
195 CGTAGTGCCCGCCCGCCCGC--CCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * * * *
13436626 CCCTGTTTAAGATCAGACCAGA-TCGAGGGTTGTGGCAGTAGGATGGGCAGCACGTAGAAGGGGA
258 CCCAGTCTAAGATCAGACCAGACT-GAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGA
* * * * * ** * *
13436690 CCCGATCGATCGCCAACTTGTGCATCCCGCCCCTCCGGCCAGCTGAGCGCCTGCACGCTCATTTC
322 CCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTC
* * * * *
13436755 ATGGGTTGACCTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCACAGTCTA
387 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * ** *
13436820 AGATTGGACCGGATTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
452 AGATCGGACAGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
* * * * *
13436885 TTTCTTTGTCGGGGCACCATCACCGGAGCATTGTTGGAGAACCTGACCGGCGGCATTGGGGTTCT
517 TTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * ** *
13436950 GACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATCTGTGCTGGTACTTGGCCCGTA
581 GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
13437015 GTATTGGCCCCCTATTCCTCCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGAT
646 -TATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
13437079 TTTATAGCGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACATTTTTTTCAAATGGTC
709 TTTACAG-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
** *
13437144 ACAAAATCTTGTACACTTCGAGTTTCAAGCTGAATTGTTTTGTGCATGCCAACAAAAATGCAAGG
773 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGG
* * *
13437209 ATCACGTCTACCAAGTTTGGGG-CAAAAACTCTTTCCTAAAAAATTTTTAACAAAATTCACGAAC
838 ATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAAAA-TTTTAA-AAAA-TCTCGAAC
13437273 CG
899 CG
*
13437275 TAAAAAGTTTCAAAAATCATTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
1 TAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* **
13437340 GGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
65 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* *
13437405 GATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGCC-A
130 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* ** * * ** *
13437469 GCGTA--------CTGCTTG--CCCGCTCCTTTCATCGGTTGGCTTAGGCATATAGTGTTCATTC
195 -CGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * ** *
13437524 CTAGTCTAAGATCGGACCGGACCGATGGTTAAGGTAGCAAGATTAGCAGCACGCAGAGGGGGACC
259 CCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACC
* * * * * *
13437589 CGACCAAACCTCAGCTTACGCATACCGCCCCTCTGG-TCGACTGAGCGCCCGCACGCTCGGTTT-
324 CGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTC-GTTTC
* * * *
13437652 GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAATCTA
387 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * *
13437717 AGATCGGATTGAACCGAAGGTTG-AGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTAT
452 AGATCGGACAGGACCGAGGGTTGCA-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
** * *
13437781 TTTTCTTCGTCGGGGTGCCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTC
516 TTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * ** * **
13437846 CGACGATTCGGGGGGGCCTAGGGGGTTGTGCACACAAAATGTGGGATGGGTGCTCATACTTGGCC
580 CGGCGA-TCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
13437911 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAG
642 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
13437976 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
707 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
13438041 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
772 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
13438106 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAACTCTTGAACCC
837 GATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
* ** **
13438170 CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA--------G--ATGAAACTTCAATTGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
**
13438225 GCTTAAGGGACCATTGTATGAATTTACTGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
13438290 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCCGGTCGGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * * *
13438355 ATAGTGCCCGCCCGTCCGCCTACCCACTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTGATTC
196 GTAGTGCCCGCCCGCCCGCC--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * * * *
13438420 CCAGTCTAAGATTGGATCAGACCGAGGGTTGCAGCAGCAGCATCGGCAGCACGTAAAGGGGGACC
259 CCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACC
* *** * * * ** *
13438485 C-AGTCGATCCCC-GACTTGCGCATCCCCGACGTAGTACCCGCCTGCCTGCCCGTCCGTC-CGCT
324 CGA-CCGATCCCCAG-CTTGCGCAT-CCCG-C-CCCT--CTGGCTGGCTGAGCGCCCG-CACGCT
* ** * ** * *
13438547 CATTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-CGGACTGGACTGAG
381 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA---G-TTCA-
*** * * * * * ** *
13438610 GGTT-GTGGTAGCT-GGATCGGTAGCACGTA--GAGGGTTACCCAGTCGATCCCCGGCATGCGCA
441 --TTCCCAGT--CTAAGATCGG-A-CA-GGACCGAGGGTT--GCAG-C-AGCACATGC-TGGGC-
** * * * * * ** *** * *** **
13438671 TCCCGCCCCTCTGGCCGACTGAACG-CCTGCACGCTCGTTTCGTGGG-TTGA-CTTAG-GCAT--
493 T--CGGGCATGT-GCTG-GTG-CCGTATTTTTC-TTCG--TCG-GGGCACCATCTCGGAGCATCG
* * ** * ** * * * * * *** * *
13438730 ACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAG
549 TCGGAGAACCTGACC-GGC--GGCAT-TGG-G---GTT-CC-GGC---GATCGG-GGGGGCCGGG
* * * * *** * ** *
13438795 GGTTGTGGTAGCACATGCTG-G-GCTCGGGCATATGCTGGTGCCACATT-TTTCTT-CACCGAGG
600 GGGTGT-G-CGCACATGATGTGCGAT-GGG----TGCTGGT---AC-TTGGCCCTTATATTG-GC
* * * * * * ** * *** * ** *
13438856 CACC-ATCGCTGGAGC-ATCGCT-GAAGAACCTGACCGACAGCGTTGGGGTTCCGACGATCGGGG
653 CCCCTATCCCT-CATCAAAC-CTCG-AGAA-CTCA-C-ACCCCCTTAAAG---AG-C-ATTTGAG
******** * * **** * ** *
13438918 GGCCGGGGGGTGTGC-GCACA-TGATGTACGATGGGTGCTGGTACTTGGCCATTATATTGGCCCC
707 ATTTTACAGGTTTGCTGC-CAGT-A-G--CCATTAAAG-T-GT-C-T-G--A--A-ATGGGGACA
** * **** ** * * * * **
13438981 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTT
757 CT-T---TTTTCAAA--T---G--GTCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATT
* *** * ** * * * ** ** *
13439045 GCTTCCAGTA-G-CAATTAAAGTGTCTGAAATGGGA-CAC-TTTTTCAA-AAT--GGTCACAAAA
809 GTTTTGTGCATGCCAACAAAAAT-AC---AA--GGATCACGTCTACCAAGTTTGGGGCCA-AAAA
* *** ** *** * * *
13439103 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
867 TCCT-T-C-CGAAAAAATTTTA----AA-AAATCT-CG-A-ACCG
* * ** * * * * * * ** *
13439147 AACAAAAG-TACAAGGATCATGTCTACCAAGATTGGGGACAAA-AATTCTTC-TG--AAAAAATT
1 TA-AAAAGTTTCAAAAATC--GT-GA--AA-AAT--AGA-AAACGAGTCGTCTTGCCATGAAACT
* ** ** * * ** * ** * *
13439207 TTA--AAAAATC-T--CGAACC---GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
56 TCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G---GC-A-TT
* * * * ** *** ** * * *
13439264 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAT-A
112 GGCATG-CA-GAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCA-CCCT-ATCG
* * ** * *** * ** * * ** ***
13439328 ATGGCATTGGCAAGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCGCCCTATCGATCCACG
161 AT-CCA-CGGCTTGC-G---CATCCCG-TCT-CTCT-GGCCGACGTAGTGCCCGCCCG--CC-C-
*** * * * * *** * **
13439392 GCTTGCGCATCCTGTCTC-TCTGGTCGGCGTAGTGCCCGCTTACTCGTTTTGTCGGTTGGCTTAG
213 GCCCCCGC-T-C-GTTTCGTC-GGTTGGCTTA--G---GCATA--CGGAGT-TC-ATT--CCCAG
* * ** * * * * * *
13439456 GCATACGGAGTTCATTCCCA-ATCT-AAGATTGGACCAG-ACCAAGGGTTGTGGCAGCAGGATAG
263 TC-TA---AGATCA-GACCAGA-CTGAGGGTT--A-CGGTAGC-A-GGAT-CGGCAGC-------
* * * *
13439518 GTAGCATGCAGAGGGGGACCTGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
309 --A-C--GTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
* * *
13439583 CGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
369 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * * * *
13439648 GAGTTCATTCCCAATCTAAGATCAGACCA-GACTGCGGGTTACGGTAGCACAAGCTAGGCTCGGG
434 GAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGG
* * * * * * *
13439712 CAAGTGCTGGTGTCGAATTTTTCTTTGTCGGGGCACCATCACCGGAGCATTGCCGGAGAACCTGA
498 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGA
* * * * * *
13439777 CCGGCGGTATTAGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACGTGGTGTGCGATGGG
562 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
13439842 TGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCATCATCAAACCTCGAGAACTCACACCCCCT
627 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
13439907 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGTGACA
692 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
13439972 C-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
757 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
* *** * * * *
13440036 CAGC-AAAATGTGAGGATCATGTCTACCAAGTTTTGGGCCAAAAGTCCTTCCAAAAAAATTTTAA
822 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
*
13440100 AAAATCTCGAACCC
887 AAAATCTCGAACCG
** * *
13440114 TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ***
13440179 GCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* *
13440244 ATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGAC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
13440309 GTAGTGCCCGCCCGCCCGCCCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
196 GTAGTGCCCGCCCGCCCG-----CC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** *** ** ** * ** **
13440374 ATTCCCAGTCTAAGATTGGATTGGACCAAGGGTTGTGGCAGCAGGATTTGCAGCACCCAGAGGGG
255 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGG
* * * * * *
13440439 GACCCGGCTGATCCCCAGCTTGCGCATCCCACCCCTCTGACCGGCTGAGCTCCCGCACGCTCGTT
320 GACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTT
** * ** **
13440504 TTATGGGTCATGACTTA-GCAGATGGAGATTCATTCCCAGTCTAAGCATATAGAGTTCATTTCCC
385 TCGTGGGT--TGACTTAGGCATACAGAG-TTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCC
* * * *
13440568 -GTCAAAGATCAGACCGGACCGAGGGATTAC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGT
446 AGTCTAAGATCGGACAGGACCGAGGG-TTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGT
** * * * *
13440631 GCCGTATTTTTTCTCTCACCGGAGCGCGACCATCCGTCAGAGCATCGTTGGAGAGCCTGAGCTGG
509 GCCGTA-TTTTTCT-TCGTCGG-G-GC-ACCAT-C-TCGGAGCATCGTCGGAGAACCTGA-CCGG
* * * * *
13440696 CAGCATTAGGGTT-CGGATGATTC-GGGGGG-CTGGGGGTGTGACGTACATGATG-GCGACTGGG
566 CGGCATTGGGGTTCCGG-CGA-TCGGGGGGGCCGGGGGGTGTG-CGCACATGATGTGCGA-TGGG
* * *
13440757 TGCTGGT-TTTGGCCC-TATA-TGGCCCCCTAT-CC-CATCAAACCTCAAGAAACATCACA-CGC
627 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AAC-TCACACCCC
* *
13440816 CTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
690 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
13440881 CACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCAC
755 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
* * * * * ** *
13440946 ACCGACATAAATACAAGGATCATGCCTACCGTGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
820 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT
* *
13441011 AAAAAATCCCAAACCG
885 AAAAAATCTCGAACCG
*
13441027 -CAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-TTCACGTGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
13441090 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * **
13441155 ATATGCCTAAACCCACCTACCACCCTATTGATCTACGGCTTGTGCATCCCATCTCTCTGGCCGGT
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
13441220 GCAGTGCCCGCCCGCCCG--CCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGCA-TTCATTCC
196 GTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCC
* * ** * * * * * * *
13441282 CAGTCTAAGATCGGACCGGACTGAGGGTTATTGCAGTAGGATTGGTAGCTCGCAGACGGGGACCT
260 CAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACC-
* * * ** *
13441347 TG-CCG-------GCTGAGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCATGCACGCTCATTTCG
324 CGACCGATCCCCAGCT-TGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCG
13441404 TGGGTTGAC-T-----T----AG----------G--T----ATACGGAGTTCATTCCCAGTCTAA
388 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * * **
13441443 GATCGGACCGGATTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCCCATTT
453 GATCGGACAGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
* *
13441508 TTCTTCATCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
518 TTCTTCGTCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
13441573 ACGATCGGGGGGGCCGGGGCGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
582 GCGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
13441638 TATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCATA-CCCCTTAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
13441701 TACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACATTTTTTTCAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * * *
13441766 AAATCTTGTACTCTTCGAGTTTTTAGCTGATTTTTTTTATGCATACCAAAAAAAATACAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
* *** * *
13441831 ACGTCTGCCAAGTTTTCTGCCAAAACTCC-T--GAAAAAATTTAAAAAAATCTCGAACCG
841 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
* *
13441888 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
13441953 GCTTAAGGGACCACTGTATGAATTTACAAG-GATAAAAATGGCATTGGCATGCAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * **
13442017 ATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGT
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
** * * *
13442082 GTAGCGCTCGCCCGCCTACCCGCATGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTA
196 GTA--G-T-GCCCGCCCGCCCGC--CCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
*
13442147 ATTCCCAATCTAAGAT
255 ATTCCCAGTCTAAGAT
13442163 TGGCTCGGAT
Statistics
Matches: 7588, Mismatches: 1371, Indels: 881
0.77 0.14 0.09
Matches are distributed among these distances:
860 2 0.00
861 46 0.01
862 197 0.03
863 62 0.01
864 182 0.02
865 8 0.00
866 29 0.00
867 7 0.00
868 42 0.01
869 33 0.00
870 48 0.01
873 1 0.00
875 1 0.00
884 137 0.02
886 17 0.00
887 412 0.05
888 348 0.05
889 123 0.02
890 61 0.01
891 10 0.00
892 270 0.04
893 1 0.00
894 18 0.00
895 31 0.00
896 109 0.01
897 354 0.05
898 449 0.06
899 555 0.07
900 47 0.01
901 65 0.01
902 321 0.04
903 544 0.07
904 170 0.02
905 1011 0.13
906 31 0.00
907 69 0.01
908 65 0.01
909 177 0.02
910 19 0.00
911 222 0.03
912 128 0.02
913 71 0.01
914 42 0.01
915 53 0.01
916 7 0.00
917 14 0.00
918 13 0.00
919 6 0.00
920 7 0.00
921 4 0.00
922 8 0.00
923 2 0.00
924 2 0.00
925 4 0.00
926 14 0.00
927 8 0.00
928 13 0.00
929 2 0.00
930 3 0.00
931 5 0.00
932 4 0.00
933 10 0.00
934 18 0.00
935 7 0.00
936 3 0.00
937 18 0.00
938 17 0.00
939 6 0.00
940 7 0.00
941 4 0.00
942 13 0.00
943 2 0.00
944 6 0.00
945 8 0.00
946 6 0.00
947 9 0.00
948 1 0.00
949 3 0.00
950 4 0.00
952 1 0.00
953 1 0.00
954 5 0.00
955 7 0.00
956 2 0.00
957 1 0.00
958 3 0.00
959 17 0.00
960 3 0.00
961 6 0.00
962 10 0.00
963 1 0.00
964 5 0.00
965 9 0.00
966 24 0.00
967 31 0.00
968 19 0.00
969 13 0.00
970 17 0.00
971 3 0.00
973 3 0.00
974 12 0.00
975 9 0.00
976 4 0.00
977 23 0.00
978 20 0.00
979 17 0.00
980 3 0.00
981 1 0.00
982 2 0.00
983 2 0.00
984 6 0.00
985 6 0.00
986 13 0.00
987 10 0.00
988 1 0.00
989 2 0.00
990 3 0.00
991 6 0.00
992 10 0.00
993 5 0.00
994 3 0.00
995 4 0.00
996 1 0.00
997 2 0.00
998 2 0.00
999 1 0.00
1000 5 0.00
1001 5 0.00
1003 1 0.00
1004 16 0.00
1005 6 0.00
1006 1 0.00
1007 7 0.00
1008 5 0.00
1009 10 0.00
1010 5 0.00
1011 6 0.00
1012 17 0.00
1013 9 0.00
1014 3 0.00
1015 10 0.00
1016 11 0.00
1018 11 0.00
1019 7 0.00
1020 17 0.00
1021 16 0.00
1023 1 0.00
1024 82 0.01
1025 64 0.01
1026 88 0.01
1027 73 0.01
1028 63 0.01
1029 60 0.01
1030 77 0.01
1031 91 0.01
1032 98 0.01
1033 102 0.01
1034 108 0.01
1035 94 0.01
1036 73 0.01
1037 78 0.01
1038 68 0.01
1039 62 0.01
1040 64 0.01
1041 57 0.01
1042 77 0.01
1043 68 0.01
1044 52 0.01
1045 53 0.01
1046 16 0.00
1047 21 0.00
1048 75 0.01
1049 29 0.00
1050 36 0.00
1051 19 0.00
1052 28 0.00
1053 48 0.01
1054 92 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
ACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACAGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
TTCGTCGGGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
Found at i:13435900 original size:26 final size:26
Alignment explanation
Indices: 13435864--13435916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13435854 GTTGACTTAG
*
13435864 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13435890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13435916 G
1 G
13435917 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13437702 original size:26 final size:26
Alignment explanation
Indices: 13437666--13437718 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13437656 GTTGACTTAG
* *
13437666 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
13437692 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13437718 G
1 G
13437719 ATCGGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13439644 original size:26 final size:26
Alignment explanation
Indices: 13439615--13439667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13439605 GTTGACTTAG
*
13439615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13439641 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13439667 G
1 G
13439668 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13440275 original size:889 final size:887
Alignment explanation
Indices: 13438557--13442085 Score: 4333
Period size: 889 Copynumber: 4.0 Consensus size: 887
13438547 CATTTCGTCA
* * ** *
13438557 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGTAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGC
* * * ** * * * *
13438622 TGGATCGGTAGCACGTAGAGGGTTACC-CAGTCGATCCCCGGCATGCGCATCCCGCCCCTCTGGC
66 AGGATTGGTAGCACGCAGAGGGGGACCTGACT-GATCCCCAGCTTGCGCATCCCGCCCCTCTGGC
* * * *
13438686 CGACTGAACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
130 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** **
13438751 AGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCACATGCTGG
195 AGCATACGGAGTTCATTCCCA-TCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGG
* * * *
13438816 GCTCGGGCATA-TGCTGGTG-CCACATTTTTCTTCACCGAGGCACCATCGCTGGAGCATCGCTGA
259 GCTCGGGCA-AGTGCTGGTGCCCA-ATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGG
* * *
13438879 AGAACCTGACCGACAGCGTTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
322 AGAACCTGACCGGCAGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
13438944 ACGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
387 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
13439009 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCAATTAAAGTGTCTGAAA
452 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
13439074 T-GGGACACTTTTTCAAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
516 TGGGGACACTTTTTC-AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * * * * *
13439138 GTGCATGCCAACAAAAGTACAAGGATCATGTCTACCAAGATTGGGGACAAAAATTCTTCTGAAAA
580 ATGCATACCAACAAAA-TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
13439203 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
644 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13439268 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAATAATGGC
709 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
13439333 ATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTG
774 ATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
13439397 CGCATCCTGTCTCTCTGGTCGGCGTAGT-GCCCGCTTACTCGTTTTGTCG
838 CGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCTCACTCGTTTTGTCG
* * *
13439446 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGC
* *
13439511 AGGATAGGTAGCATGCAGAGGGGGACCTGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
66 AGGATTGGTAGCACGCAGAGGGGGACCTGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
* *
13439576 GGCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13439641 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGCGGGTTACGGTAGCACAAGCTAGG
196 GCATACGGAGTTCATTCCC-ATCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * *** * *
13439706 CTCGGGCAAGTGCTGGTGTCGAATTTTTCTTTGTCGGGGCACCATCACCGGAGCATTGCCGGAGA
260 CTCGGGCAAGTGCTGGTGCCCAATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
13439771 ACCTGACCGGCGGTATTAGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACGTGGTGTGC
325 ACCTGACCGGCAGCATTAGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
* * *
13439836 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCATCATCAAACCTCGAGAACTCACA
389 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
13439901 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATG
454 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
13439966 GTGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
518 GGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATG
* * *** * * *
13440031 CATGCCAGCAAAATGTGAGGATCATGTCTACCAAGTTTTGGGCCAAAAGTCCTTCCAAAAAAATT
583 CATACCAACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** *
13440096 TTAAAAAATCTCGAACC-CTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCCTGC
648 TTAAAAAATCTCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
13440160 CATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
712 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
13440225 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
777 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
13440290 TCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCTCCCACCCGCTCGTTTCGTCG
842 TCCCGTCTCTCTGGCCGGCGTAGT-------CGCCCG--CT--CA----CTCGTTTTGTCG
* **
13440351 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCAAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGC
* * * * * * *
13440416 AGGATTTGCAGCACCCAGAGGGGGACCCGGCTGATCCCCAGCTTGCGCATCCCACCCCTCTGACC
66 AGGATTGGTAGCACGCAGAGGGGGACCTGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
* ** * *
13440481 GGCTGAGCTCCCGCACGCTCGTTTTATGGGTCATGACTTA-GCAGATGGAGATTCATTCCCAGTC
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGT--TGACTTAGGCATACGGAG-TTCATTCCCAGTC
** * * * **
13440545 TAAGCATATAGAGTTCATTTCCCGTCAAAGATCAGACCGGACCGAGGGATTACGACAGCACATGC
193 TAAGCATACGGAGTTCA-TTCCCATCTAAGATCAGACCAGACCGAGGG-TTACGGTAGCACATGC
* * * * *
13440610 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTCTCTCACCGGAGCGCGACCATCCGTCAGAGCA
256 TGGGCTCGGGCAAGTGCTGGTGCC-CAATTTTTCT-TCACCGG-G-GC-ACCAT-CGCCGGAGCA
** * * * * *
13440675 TCGTTGGAGAGCCTGAGCTGGCAGCATTAGGGTTCGGATGATTCGGGGGG-CTGGGGGTGTGACG
315 TCGCCGGAGAACCTGA-CCGGCAGCATTAGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTG-CG
* *
13440739 TACATGATG-GCGACTGGGTGCTGGT-TTTGGCCC-TATA-TGGCCCCCTAT-CC-CATCAAACC
377 CACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
13440798 TCAAGAAACATCACACGCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTA
441 TCAAG-AAC-TCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
13440863 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAG
504 AAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
* * * **
13440928 CTGAATTTTTTTATGCACACCGACATAAATACAAGGATCATGCCTACCGTGTTTGGGGCCAAAAC
568 CTGAATTTTTTTATGCATACCAACA-AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
* * *
13440993 TCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGC-AAAAGTTTCAAAAATCGTGAAAAATAGAA
632 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
13441057 AACGAGTCGTCTTGCCATGAAA-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
697 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
13441121 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATTGA
762 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * * *
13441186 TCTACGGCTTGTGCATCCCATCTCTCTGGCCGGTGCAGTGCCCGCCCGCCCGCCCGCTCATTTCG
827 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCTCACTCG-T--TTT-G
*
13441251 TCA
885 TCG
** * *
13441254 GTTGGCTTAGGCATACGGCA-TTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATTGCAG
1 GTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAG
* * * * *
13441318 TAGGATTGGTAGCTCGCAGACGGGGACCT---TG----CCGGCTGAGCGCATCCCGCCCCTCTGG
65 CAGGATTGGTAGCACGCAGAGGGGGACCTGACTGATCCCCAGCT-TGCGCATCCCGCCCCTCTGG
** * *
13441376 CCGGCTGAGCGCATGCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCT
129 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
** *
13441441 AAG-AT-C-G-G---------A-C------C-G----GATTGAGGGTTGCGGTAGCACATGCTGG
194 AAGCATACGGAGTTCATTCCCATCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGG
* * * * * *
13441481 GCTCGGGCATGTGCTGGTGCCCCATTTTTCTTCATCAGGGCACCATCGTCGGAGCATCGTCGGAG
259 GCTCGGGCAAGTGCTGGTGCCCAATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
13441546 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGTGGGCGCACATGATGT
324 AACCTGACCGGCAGCATTAGGGTTCCGACGATC-GGGGGGCCGGGG-GGTGTGCGCACATGATGT
*
13441611 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCA
387 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
13441675 TACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
452 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
13441740 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTTTAGCTGATTTTTTTTA
517 GGGGACA-CTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTA
* * * ***
13441805 TGCATACCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTTCTGCCAAAACTCC-T--GAAAAA
581 TGCATACC-AACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
13441867 ATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
645 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
13441932 GCCATGAAATTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAG-GATAAAAATGGCA
710 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
13441996 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGTG
775 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
13442061 CATCCCGTCTCTCTGGCCGGTGTAG
840 CATCCCGTCTCTCTGGCCGGCGTAG
13442086 CGCTCGCCCG
Statistics
Matches: 2306, Mismatches: 270, Indels: 155
0.84 0.10 0.06
Matches are distributed among these distances:
860 2 0.00
861 50 0.02
862 196 0.08
863 62 0.03
864 178 0.08
865 9 0.00
866 18 0.01
867 7 0.00
868 37 0.02
869 7 0.00
873 1 0.00
874 1 0.00
880 1 0.00
888 1 0.00
889 549 0.24
890 214 0.09
891 13 0.01
892 1 0.00
894 2 0.00
895 24 0.01
896 12 0.01
897 49 0.02
899 5 0.00
900 3 0.00
901 1 0.00
902 2 0.00
903 81 0.04
904 1 0.00
905 157 0.07
906 8 0.00
907 64 0.03
908 39 0.02
909 8 0.00
910 17 0.01
911 204 0.09
912 125 0.05
913 70 0.03
914 41 0.02
915 38 0.02
916 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGC
AGGATTGGTAGCACGCAGAGGGGGACCTGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCATCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGGC
TCGGGCAAGTGCTGGTGCCCAATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCGGCAGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCAT
ACCAACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTCGCCCGCTCACTCGTTTTGTCG
Found at i:13443944 original size:26 final size:26
Alignment explanation
Indices: 13443904--13443956 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13443894 GTTGACTTAG
**
13443904 GCATACGGAGCTCATTCTGAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
13443930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
13443956 G
1 G
13443957 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:13444565 original size:903 final size:900
Alignment explanation
Indices: 13442134--13444693 Score: 3539
Period size: 903 Copynumber: 2.8 Consensus size: 900
13442124 ATTGGCTTAG
* * * * * *
13442134 GCATACGGAGTTAATTCCCAATCTAAGATTGG-CTCGGA-TGGAGGGTTGGGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-CAGACCGG-GGGTTGCGGTAGCACATGCTG
*
13442197 GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
64 GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
13442262 GAACCTGACCGACAGCATTAGGGTTCCGACGATCGGAGGGGCCAGGAGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCAGGGGGGTGTGCGCACATGATG
* * * *
13442327 TGCGATGGGTGCTGGTACTTGGCCCTCATATTCGCCTCCTATCCCTCATCAAACCTCGAGAACTT
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13442392 ACACCCCCTGAAAGAGCATTTGAGATTTTAT-AGGTTTGCTG-CTAGTAGCCATTAAAGTGTCTG
258 ACACCCCCTTAAAGAGCATTTGAGATTTT-TCAGGTTTGCTGCCT-GTAGCCATTAAAGTGTCTA
*
13442455 AAATAGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTT
321 AAATAGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTT
* * *
13442519 TTTTGTGCTTGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGTGCCAAAACTCC-TTCT
386 TTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * * *
13442583 GAAAGAATTTTAAAAAATCCCGAACCGTAAAATA-TTTGGAAAATCATGAAAAATAGAAAACGAG
449 AAAAAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCGAAAATCGTGAAAAATAGAAAACGAG
* * * *
13442647 TCGTATTGCCATAAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTATAAGCCATACA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
13442712 AATGGCATTGGCATGCAAAAATATGAAGATGTGCTTAAACGCGCCTACCACCCTATCGATCCACG
577 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
13442777 GCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCACG-C-CCGCTCGTTTCATCGG
642 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCGCCGCTCGTTTCGTCGG
* * * ** * *
13442840 TTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTAAACTGGACTGAGGGTTGCGACAATA
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGATGCGACAACA
* * * * * * *
13442905 GGATCGGCAGCACGTAGAGGGGGACCCGGTTGATCCCCGGCTTGCACATCCTGCCCCTTTGGCCG
772 GGATCGGCAGCACGCAGAGGGGAACCCAGTCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCG
* ** *
13442970 GCTGAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAA
837 ACTGAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGCTCATTCCCAGTCCAA
* * * *
13443034 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCACACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGGGGGTTGCGGTAGCACATGCTGGG
** *
13443099 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
13443164 ACCT-ATCCGACGGCATTGGGGTTCCAACGATC----GG---GGGGGTTGTGCGCACATGATGTG
131 ACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
13443221 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAATCCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
13443286 ACCCCCTTAAAGAGCTTTTGAGATTTTCCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAGAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTAAAAT
* *
13443351 GGGGAA-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTT
325 AGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTT
* * *
13443415 TATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTCCAAAA
389 TGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAA
* ** * *
13443480 AAATTTTTAAAAATATCGAACCGTAAAAAGTTTCAAAAAT-GTTGAAAAAAAGAAAACGAGTCGT
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCG-TGAAAAATAGAAAACGAGTCGT
* * **
13443544 CTTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTGGAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATG
**
13443609 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
13443674 GTGCATCCCGTCTCTCTGGTCGACGTATTGCCCGCCTGCCCGTTCGTCTGCTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-TCG-CCGCTCGTTTCGTCGGTT
* ** *
13443739 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGATGCGGTAGCAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGATGCGACAACAGG
* * *
13443804 ATCGGTAGCATGCAGAGGGGAACCCAGTCGATCCCCGACTTGCGCATCCCGCCCC-CTGGCCGAC
774 ATCGGCAGCACGCAGAGGGGAACCCAGTCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGAC
* * ** *
13443868 TGAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCTGAGTCTAA
839 TGAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGCTCATTCCCAGTCCAA
*
13443930 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGGGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGGGGGTTGCGGTAGCACATGCTGGG
* * * *
13443995 CTCAGGCATGTGCTGGTACCGCT-TTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCC-ATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
13444059 AACCTGACCTACGGCATTGGGGTTCTGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGT
* *
13444124 GCGATCGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
13444189 CACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTAAAA
* *
13444254 T-GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCA-CTGAATTGTT
324 TAGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGATTTTTT
* * **
13444317 TTGTGCATGCCAAAACGAATACAAGGATCACGTCTACTAAGTTTGGGGTGAAAACTCCTTTCAAA
388 TTGTGCATGCCAAAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAA
* * * *
13444382 AAAATTATAAAAAATCCCGCACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCCT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
13444447 CTTGCCATGAAACTTCACGTGAAGGCTTAATGCG-CGATTGTATGAATTTACAAGCCATAAAAAT
517 CTTGCCATGAAACTTCACGTGAAGGCTTAA-G-GACCATTGTATGAATTTACAAGCCATAAAAAT
* *
13444511 GGCAATGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
13444576 TGCCCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCGTTGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGT-CG-CCGCTCGTTTCGTCGGT
* * * *
13444641 TGGCTTAGTCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
13444694 TTATGGCAGC
Statistics
Matches: 1457, Mismatches: 171, Indels: 61
0.86 0.10 0.04
Matches are distributed among these distances:
892 189 0.13
893 262 0.18
894 4 0.00
895 3 0.00
896 204 0.14
897 118 0.08
899 1 0.00
900 139 0.10
901 4 0.00
902 5 0.00
903 335 0.23
904 192 0.13
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGGGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTAAAATA
GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCGCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGATGCGACAACAGGATCGGCA
GCACGCAGAGGGGAACCCAGTCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGACTGAACGC
CCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGCTCATTCCCAGTCCAA
Found at i:13446059 original size:558 final size:564
Alignment explanation
Indices: 13445224--13446293 Score: 1614
Period size: 558 Copynumber: 1.9 Consensus size: 564
13445214 AAGCAAACGG
* * *
13445224 AGTTCATTCCTAGTCTAAGATCGGACTAAACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCT
1 AGTTCATTCCTAGTCTAAGATCGGACCAAACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
* * * *
13445289 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGACCATCACCGGAGAACTTGACT
66 TGTGCTGGTGCCGTATTTTTCTTCATCGGGG---C--CACCGGACCAGCA-CGGAGAACCTGACC
* * * **
13445354 GGCGGCATTAAGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGCG
125 GGCGGCATTAAGGTTCCGACGATCAGGGGGGCCGGGGGGTATGCACACATGATGCACGATGGGCG
* **
13445419 CTGGTACTTTTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
190 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
13445484 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACT
255 AAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* *
13445549 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
320 TTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCA
* * *
13445614 ACAAAAATATAAGGATCACGTCTACCAAGTTTGGGACCCAAACTCCTTCCGAAAAAATTTT-AAA
385 ACAAAAATACAAGGATCACGTATACCAAGTTTGGGACCAAAACTCCTTCCG-AAAAATTTTAAAA
* *
13445678 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGTC-TCTTTGGCCGGCG
449 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTTGGCCGGCG
13445742 TACTGCCCGCCCGCCCGCCCGTTCATTTTGTCGGTTGTTTTAGGCATACGA
514 TACTGCCCGCCCGCCCGCCCGTTCATTTTGTCGGTTGTTTTAGGCATACGA
* * * *
13445793 AGTTCATTCCTAGTCTAAGATTGGACCGAACCGAGGGTTGCTGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCTAGTCTAAGATCGGACCAAACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
13445858 TGTGCTGGTGCCGTATTTTTCTTCATCGGGG-CA-C-GACC-GCA-GGAGAACCTGACCGGCGGC
66 TGTGCTGGTGCCGTATTTTTCTTCATCGGGGCCACCGGACCAGCACGGAGAACCTGACCGGCGGC
** * * * *
13445918 ATTGGGGTTCCGATGATCAGGGGGGTCGGGGGGTATGCCCACATGATGCACGATGGGTGCTAGTA
131 ATTAAGGTTCCGACGATCAGGGGGGCCGGGGGGTATGCACACATGATGCACGATGGGCGCTAGTA
*
13445983 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGC
196 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGC
*
13446048 ATTTGAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
261 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* * *
13446113 AAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTATGCATGCCAACAAAA
326 AAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAA
* *
13446178 ATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAAAATCT
391 ATACAAGGATCACGTATACCAAGTTTGGGACCAAAACTCCTTCCGAAAAATTTT--AAAAAATCC
*
13446243 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
454 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
13446294 GCCCTGAAAC
Statistics
Matches: 453, Mismatches: 44, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
557 9 0.02
558 293 0.65
560 52 0.11
561 8 0.02
562 1 0.00
563 2 0.00
569 88 0.19
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (564 bp):
AGTTCATTCCTAGTCTAAGATCGGACCAAACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
TGTGCTGGTGCCGTATTTTTCTTCATCGGGGCCACCGGACCAGCACGGAGAACCTGACCGGCGGC
ATTAAGGTTCCGACGATCAGGGGGGCCGGGGGGTATGCACACATGATGCACGATGGGCGCTAGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGC
ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
AAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAA
ATACAAGGATCACGTATACCAAGTTTGGGACCAAAACTCCTTCCGAAAAATTTTAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTTGGCCGGCGTACTGCC
CGCCCGCCCGCCCGTTCATTTTGTCGGTTGTTTTAGGCATACGA
Found at i:13447388 original size:26 final size:26
Alignment explanation
Indices: 13447359--13447410 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13447349 TTGACTTAGC
13447359 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
13447385 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13447411 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13448290 original size:26 final size:26
Alignment explanation
Indices: 13448261--13448313 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13448251 GTTGACTTAG
13448261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13448287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13448313 G
1 G
13448314 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13449188 original size:26 final size:26
Alignment explanation
Indices: 13449159--13449209 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13449149 TTAACTTAGT
13449159 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13449185 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
13449210 TATCAAACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Done.