Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 71 of 131
Found at i:13450093 original size:26 final size:26
Alignment explanation
Indices: 13450057--13450109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13450047 GTTTACTTAG
*
13450057 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13450083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13450109 G
1 G
13450110 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13450433 original size:900 final size:896
Alignment explanation
Indices: 13446485--13455180 Score: 10675
Period size: 900 Copynumber: 9.8 Consensus size: 896
13446475 GTTGGCTTTG
* * *
13446485 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * **
13446550 CTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTACGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * *
13446615 ACTTAACCGACGGCATTGGGGTTTCGACGATCGTGGGGGCC-AGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * **
13446679 CGAAGGGTGCTGGTACTTGGCCCTTATATTGGTCGCCTATCCCTCATCAAACCTTAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
13446744 ACCCCCTTAAAGTGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13446809 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * ** * *
13446874 TACATACCAACAAAAATACACGGATCATGTCTTCCAAGTTTGGGGAGAAAACTCCTTTCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** *
13446939 ATTTTAAAAAATCTC-GAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
456 ATTTTAAAAAATC-CAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * **
13447003 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCGATAAAAATGTA
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
13447068 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATTGATCCGCGGCTCGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * *
13447133 GCATCTTGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGC-CCGCTCGTTTCATCGATTGACTT
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CTCCGCTCGTTTCATCGGTTGGCTT
* * * * * * * *
13447197 AGGTATACAGAATTCATTTCCAGTCTAAGATCAGACCAGACCGAGTGTTGCAGCAGCAGGATCGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC--A-C-AGGGTTGCGGCAGCAGGATCGA
* * * * * *
13447262 CAACACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCTTCCCACCCCTCTGGGCGGCTGCGC
775 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
** * *
13447327 GTACGTACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAA
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
13447384 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAACAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
13447449 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCGAAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * *
13447514 ACCTGACCGACGGCATTGGGG-TTCTGGCGAT-AGGGGGGTCGGGGGGGTTGTACGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATG
* * *
13447577 TGAGATGGGTGCTGGTACTTGGCCATTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** *
13447642 ACACATCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13447707 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
13447771 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** *
13447836 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
454 AAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
13447901 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTATAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13447966 CATTGGCACACAGAAATATGAAGATG-GACCTGAACCAACCTACCACCCTATCGATCCACGGCTT
584 CATTGGCACGCAGAAATATGAAGATGTG-CCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
13448030 GCGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCGACCGCCCGCACACTCGTTTCATCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCCTC-CGCTCGTTTCATCGGTT
* * *
13448095 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGGGGGTTACGGCAGCAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC--A-C-AGGGTTGCGGCAGCAGG
** * * * * * * **
13448160 ATCGGTAGCATGCAAAGGGGGACCCGACCGATCCTCGGCTTACTCATCCCGCCCCTCTGGCCGAA
770 ATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
13448225 TGAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13448287 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCGACAACACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
13448351 GCTCGGGCATTTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGAAGCATCGTCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAG
* * ** * *
13448416 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGGGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* **
13448481 GCG-TAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTAAAGAACTC
195 GCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
13448545 ACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCACTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
13448610 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTG
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-
* * * * *
13448674 TTGTGCAAGCCAATAAAAATACAAGGATCACGTCTACTATGTTTGGGGCCAAAACTCCTTCTGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** * *
13448739 AAAATTTAACAAAAATCCCGAACCGCAAAGGGTTTAGAAAATCATGAAAAATAGAAAATGAGTCG
453 AAAATTTTA-AAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
*
13448804 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
13448869 GGCATTGGCACGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATTCATGGCT
582 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
13448934 TGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCG---C-CCACTCATTTCGTCTGTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCTCCGCTCGTTTCATCGGTTGGC
* * * **
13448995 TTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGATCCGACTGGGGGATGCAACAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-C-AC--AGGGTTGCGGCAGCAGGATC
* * * * * * * *
13449060 -AGTAGCACGCAAAGGAGGACCCGACCGATCCTCGGCTTGCTCGTCTCGCCCCTCTGGCCGGCTG
773 GA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
13449124 AGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGTCATACGGAGTTCATTCCCAGTCTAA
837 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13449184 GCATACGGAGTTCATTCCCAGTCTAATATCAAACCGGACCGAGAGTTGCAGCATCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
13449249 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCGAAGCATCACCGAAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * *
13449314 ACATGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
13449379 CGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
13449444 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCTTTAAAGTGTTTGAAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * * * *
13449509 GTAGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTCCAACTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** **
13449574 TACATGCCAA-AAAATATACAAGGATCAC-TACTAAAAAGTTTGGGGCCAAAACTTGTTCCGAAA
391 TGCATGCCAACAAAA-ATACAAGGATCACGT-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
13449637 AAATTTTAAAAAATCCAGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
13449702 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
13449767 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
13449832 TGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCATCCCTCCCGCTCGTTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--CCCT-CCGCTCGTTTCATCGGTTG
** * *
13449897 GCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCA-AGGGTTGTGGCAGTAGGATCGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCACAGGGTTGCGGCAGCAGGATCGA
* ** *
13449961 CAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGACCGGCTGAGC
775 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* ** * *
13450026 GCCTGCACGCTCAATTCGTGGGTTTACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13450083 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
13450148 CTCAGTCACGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * *
13450213 ACCTGACTGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGTGGGGGGTGTACGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
*
13450278 GCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13450343 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCTTTAAAGTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** * * * *
13450408 AGTAGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTCCAACTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** **
13450473 GTACATGCCAA-AAAATATACAAGGATCAC-TACTAAAAAGTTTGGGGCCAAAACTTGTTCCGAA
390 GTGCATGCCAACAAAA-ATACAAGGATCACGT-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
13450536 AAAATTTTAAAAAATCCAGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
13450601 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAGGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13450666 GCATTGGCATGCAGAAATATGAGGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
13450731 GCGCATCCCATCTCTCTGGCCGGCGTAGTGACCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCCTCCGCTCGTTTCATCGGTT
* ** * * * * * *
13450796 GGCTTAGGCATATGGAGTTCATTCGTAGTATAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGA
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC--A-C-AGGGTTGCGGCAGCAGG
* ** * * * *
13450861 ATTTG-CAGCACGGGGAGTGGGACTCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGG
770 A-TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
13450925 CTGAGCGCCCGCACACTCGTTTCGTGGGTTAATTTAGGCATACGAAGTTCATTCCCAGTCTAA
834 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
13450988 G-AT-C-G-G---------A--C------CAGACC-GA-C---GGTTGTGGCAGCACATATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13451027 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGG---CA----C----CATCGTCGGAAA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * * * *
13451081 ACCTGATCGATGGCATTGGGG-TTCTGGCGATCAGAGGGGCCGGCGGGGGTGTGCACACATGATG
131 ACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATG
** * *
13451145 TATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
13451210 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTTTAAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
13451275 ATGGAGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
13451340 TGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCAG-AA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
13451404 AAATTTTAAAAAATCCAAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* ** *
13451469 TTGCCATGAAACTTCACGTGAGGGCTTAAGGGATGATTGTATGAATTTACAAGTCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13451534 CATTGGGATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
13451599 CGCATTCCGTCTCTTTGGCCGGCGTGGTGCCCGCTCGCCTGCCCGTCCGCTCATTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCCTCCGCTCGTTTCATCGGTTG
* * * *
13451664 GCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGATCAGATCAAGGGTTGCAGCAGAACGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC--A-C-AGGGTTGCGGCAGCAGGA
** * * * * * *
13451729 TCGGTAGCAGGCAGAGGAGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGCCCTGCT
771 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
13451794 GAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
13451855 GCATACATAGTTCTTTCCCAGTCTATGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
13451920 ATCAGGCATGTGCTGGTGCCGGATTTTTCTTCGTTGGGGCACCATCGGCGGTGCATCGTGGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * * *
13451985 ACCTGACCCG-CAGCTTTGGGGTTCCAACGATC-GGGGGGCCGCGGGGGTGTGTACGCACATG-T
131 ACCTGA-CCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCG-GGGGG-GTGTGCGCACATGAT
* * *
13452047 GGTGCGATTGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAAC
193 -GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
13452112 TCACACCCCCTT-AAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * **
13452176 AAATGGGGACACTTTTTTCAAATGGTCAC-AAA---TGGAAACTTCGAGTTTTTAGCTGAATTCC
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
13452237 TTTGTGCATGCCAAC-AAAATAACAAGGATCACGTCTACCAAGTTTGGCGTCAAAACGCCTTCC-
387 TTTGTGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * ** *
13452300 AAAAGAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGATAAATAGAAAACGAGT
451 AAAA-AATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
*
13452365 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
**** *
13452430 ATGGCATTGGCACGCAGAAATATGAAGATACATCTAAACCCACCTGCCACCCTATCGATCCACGG
580 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * * *
13452495 CTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCAGTTG
645 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCTCCGCTCGTTTCATCGGTTG
** * * **
13452560 GCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATGAGACTGGATCAAGGGTTGCGATAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-T-CA-C-AGGGTTGCGGCAGCAGGA
* * * * * * *
13452625 TTGGCAGCAGGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCTGGCT
771 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
13452690 GAGCACCAGCACGCTCGTTTTGTGGGTCGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
836 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13452751 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTGCGACAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** * *
13452816 CTC-GAGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGTGGGAGCATCATCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAG
* * * * *
13452880 AACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGCC-GAGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
13452944 GCGAAGGGTGCTGGTACTTGGCCCTT-TAATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13453008 ACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * *
13453073 ATGGGGACACTTTTTTCAAACAGTCAC-AAATCTTGTACACTTTGA-CTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
13453136 TCTGCATG-CAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTTCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
13453200 AAATTTAAAAAAATCCCA-AACCGTAAAAAGTTTTGAAAAT-AGTG-AAATTAAAAAACGAGTCA
454 AAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGTCG
* * * *
13453262 TCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAGTTTACAAGCCATTAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
13453327 GGCATTGGCATGCAGAAATATGAATATGTGCCTAAACCCACCTACCAACCTATCAATCCACGGCT
582 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
13453392 TGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCTGCCCGTCCGTTCGTTTCATCGGTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCTCCGCTCGTTTCATCGGTTGGC
* * * * *
13453457 TTAGGCATACGGAGTTCATTCCCGGTCTAATATCAGACCAGACCGAGGGTTGTGGTAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC--A-C-AGGGTTGCGGCAGCAGGATC
* * *
13453522 GACAACACGCAAAGGGGTACCC-A---A---------T-CG-AT-------C-C---CCGG--GA
773 GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
13453559 -----TGCACGCTTGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13453613 GCATACGAACTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13453678 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCG-A--A-------A-A
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * *
13453732 ACCTGACCGACGGCATTGGGG-TTCTGGCGATTGGGCGGGCCGGTGGGGGTGTGCACACATGATG
131 ACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATG
** * *
13453796 TATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
13453861 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13453926 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
13453991 TATGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCTAAAAATCCCTCCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
13454056 AAATTTTAAAAAATCCCA-AACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
454 AAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
13454120 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** *
13454185 TCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACAATATTGATCCACGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
13454250 GCGCATCCCGTCTCTCTGGCTGGCGTATTGCCCGCCCG----T----TCATTTCGTCGGTTTGCT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCTCCGCTCGTTTCATCGGTTGGCT
* * * * * * * *
13454307 TAGGCATATGAAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGTAAGATCA
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC--AC--AGGGTTGCGGCAGCAGGATCG
* * * * * * *
13454372 ACAGCATGCAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCACACCCCTCTGGCCGACTAAG
774 ACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
13454437 CGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATAAGAAGTTCATTGCCAGTCTAA
839 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13454495 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
13454560 CTCATGG-ATATGTTGGTGCCGTATTTTTCTTC-ACTGGGGCACCATCGCC-AGAGCATCG-CAG
66 CTCA-GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGA-AGCATCGTC-G
* *
13454621 GAGAACCTGACCGGCGACATTGGGG-TTCTGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACAT
127 GAGAACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCC-GGGGGGGTGTGCGCACAT
* * *
13454685 GATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGA
190 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * * *
13454750 ACTCACACCCGCTTAATGAGCATTTGAGATTTTAGAGGTTTGTTGCCAGTAGCTATTAAAGTGTC
255 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
13454815 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGCATT
320 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** ** * *
13454880 TTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTAAGAAGTTTAGGGTCAAAACTCCTTCC
385 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * **
13454945 AAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
450 GAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
* * *
13455010 AGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
13455075 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAG
580 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
13455140 CTTGTGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCG
645 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
13455181 GTGTCAAATT
Statistics
Matches: 6831, Mismatches: 790, Indels: 358
0.86 0.10 0.04
Matches are distributed among these distances:
848 1 0.00
849 83 0.01
850 3 0.00
851 33 0.00
852 2 0.00
853 165 0.02
854 17 0.00
855 24 0.00
856 91 0.01
857 167 0.02
859 1 0.00
861 1 0.00
862 145 0.02
863 8 0.00
864 2 0.00
865 1 0.00
866 4 0.00
867 394 0.06
868 291 0.04
869 9 0.00
871 2 0.00
872 3 0.00
873 1 0.00
875 3 0.00
876 2 0.00
877 1 0.00
879 51 0.01
880 3 0.00
881 2 0.00
882 144 0.02
883 5 0.00
884 5 0.00
885 1 0.00
888 6 0.00
889 2 0.00
890 2 0.00
891 1 0.00
892 4 0.00
893 560 0.08
894 83 0.01
895 343 0.05
896 606 0.09
897 624 0.09
898 35 0.01
899 753 0.11
900 935 0.14
901 6 0.00
902 12 0.00
903 600 0.09
904 259 0.04
905 332 0.05
906 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCTCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCACAGGGTTGCGGCAGCAGGATCGACAGCAC
GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13452724 original size:896 final size:898
Alignment explanation
Indices: 13450962--13455180 Score: 5039
Period size: 893 Copynumber: 4.8 Consensus size: 898
13450952 GTTAATTTAG
* * * * * **
13450962 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTTGTGGCAGCACATATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
13451027 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGG---CA----C----CATCGTCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * * * *
13451081 ACCTGATCGATGGCATTGGGGTTCTGGCGATCAGAGGGGCCG-GCGGGG-GTGTGCACACATGAT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGCG-GGGGTGTGTGCGCACATGAT
** * *
13451144 GTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTTGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
13451209 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTTTAA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
13451274 AATGGAGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAA--TTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
13451339 TTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-CAGA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-A
** * * *
13451403 AAAATTTTAAAAAATCCAAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* ** *
13451468 CTTGCCATGAAACTTCACGTGAGGGCTTAAGGGATGATTGTATGAATTTACAAGTCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13451533 GCATTGGGATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
13451598 GCGCATTCCGTCTCTTTGGCCGGCGTGGTGCCCGCTCGCCTGCCCGTCCGCTCATTTCATCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGTCCGCTCGTTTCATCGGTT
* * * * * * *
13451663 GGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGATCAGATCAAGGGTTGCAGCAGAACG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * * * *
13451728 ATCGGTAGCAGGCAGAGGAGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGCCCTGC
772 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
13451793 TGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
13451855 GCATACATAGTTCTTTCCCAGTCTATGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
13451920 ATCAGGCATGTGCTGGTGCCGGATTTTTCTTCGTTGGGGCACCATCGGCGGTGCATCGTGGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * *
13451985 ACCTGACCCG-CAGCTTTGGGGTTCCAACGATCGGGGGGCCGCGGGGGTGTGTACGCACATG-TG
131 ACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGCGGGGGTGTGTGCGCACATGAT-
* * *
13452048 GTGCGATTGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
13452113 CACACCCCCTT-AAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * **
13452177 AATGGGGACACTTTTTTCAAATGGTCAC-AAA-TGGAAACTTCGAGTTTTTAGCTGAATTCCTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
13452240 GTGCATGCCAAC-AAAATAACAAGGATCACGTCTACCAAGTTTGGCGTCAAAACGCCTTCCAAAA
389 GTGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
13452304 GAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGATAAATAGAAAACGAGTCGTC
453 -AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
13452369 TTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**** *
13452434 CATTGGCACGCAGAAATATGAAGATACATCTAAACCCACCTGCCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
13452499 CGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTT
** * ** * * ** *
13452564 AGGCATACGGAGTTCATTCTTAGTCTAAGATGAGACTGGATCAAGGGTTGCGATAGCAGGATTGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * *
13452629 CAGCAGGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGC
777 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
13452694 ACCAGCACGCTCGTTTTGTGGGTCGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13452751 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTGCGACAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** ** * *
13452816 CTCGAGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGTGGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * * *
13452881 ACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGC-CGAGGG-GTGTGCACACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGCGGGGGTGTGTGCGCACATGATGT
* *
13452944 GCGAAGGGTGCTGGTACTTGGCCCTT-TAATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
196 GCGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13453008 ACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * * *
13453073 ATGGGGACACTTTTTTCAAACAGTCACAAATCTTGTACACTTTGA-CTTTTAGCTGAATTTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAA-ATTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
13453137 CTGCATG-CAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTTCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
* * * * * * *
13453201 AATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAAT-AGTG-AAATTAAAAAACGAGTCATC
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
* * * *
13453264 TTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAGTTTACAAGCCATTAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
13453329 CATTGGCATGCAGAAATATGAATATGTGCCTAAACCCACCTACCAACCTATCAATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
13453394 CGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCTGCCCGTCCGTTCGTTTCATCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTT
* * * * *
13453459 AGGCATACGGAGTTCATTCCCGGTCTAATATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * *
13453524 CAACACGCAAAGGGGTACCC-A---A---------T-CG-AT-------C-C---CCGG--GA--
777 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
13453559 ---TGCACGCTTGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13453613 GCATACGAACTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
13453678 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCG-A--A-------A-A
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * *
13453732 ACCTGACCGACGGCATTGGGGTTCTGGCGATTGGGCGGGCCG-GTGGGG-GTGTGCACACATGAT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGCG-GGGGTGTGTGCGCACATGAT
** * *
13453795 GTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
13453860 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
13453925 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAA--TTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
13453990 TTATGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCTAAAAATCCCTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
* * *
13454055 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
13454120 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** *
13454185 TCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACAATATTGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
13454250 GCGCATCCCGTCTCTCTGGCTGGCGTA-T---TGCCCGCCCGT----TCATTTCGTCGGTTTGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCT
* * * * * * * * *
13454307 TAGGCATATGAAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGTAAGATCA
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * * *
13454372 ACAGCATGCAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCACACCCCTCTGGCCGACTAAG
776 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
13454437 CGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATAAGAAGTTCATTGCCAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13454495 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
13454560 CTCATGG-ATATGTTGGTGCCGTATTTTTCTTC-ACTGGGGCACCATCGCC-AGAGCATCG-CAG
66 CTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGA-AGCATCGTC-G
* * *
13454621 GAGAACCTGACCGGCGACATTGGGGTTCTGACGATCGGGGGGGCCAG-GGGGG-GTGTGCGCACA
127 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GCGGGGGTGTGTGCGCACA
* * *
13454684 TGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGG
190 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * *
13454749 AACTCACACCCGCTTAATGAGCATTTGAGATTTTAGAGGTTTGTTGCCAGTAGCTATTAAAGTGT
255 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
13454814 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGCAT
320 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA--TTGTACACTTCGAGTTTTTAGCTGAAT
** ** * *
13454879 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTAAGAAGTTTAGGGTCAAAACTCCTTC
383 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
** *
13454944 CAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
448 C-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
* * *
13455009 TAGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
13455074 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACA
577 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
13455139 GCTTGTGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCG
642 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
13455181 GTGTCAAATT
Statistics
Matches: 2861, Mismatches: 373, Indels: 180
0.84 0.11 0.05
Matches are distributed among these distances:
849 84 0.03
850 1 0.00
851 31 0.01
852 6 0.00
853 177 0.06
854 12 0.00
855 26 0.01
856 88 0.03
857 160 0.06
859 1 0.00
861 1 0.00
862 146 0.05
863 2 0.00
864 2 0.00
867 2 0.00
869 3 0.00
871 1 0.00
872 2 0.00
873 1 0.00
875 3 0.00
877 1 0.00
880 2 0.00
881 2 0.00
882 142 0.05
883 3 0.00
885 1 0.00
891 1 0.00
892 1 0.00
893 586 0.20
894 87 0.03
895 342 0.12
896 401 0.14
897 41 0.01
898 15 0.01
899 76 0.03
900 205 0.07
902 3 0.00
903 88 0.03
904 113 0.04
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGCGGGGGTGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13452761 original size:26 final size:26
Alignment explanation
Indices: 13452725--13452777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13452715 GTCGACTTAG
*
13452725 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13452751 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13452777 G
1 G
13452778 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13453626 original size:26 final size:26
Alignment explanation
Indices: 13453587--13453639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13453577 ATTGACTTAG
* *
13453587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
13453613 GCATACGAACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
13453639 G
1 G
13453640 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:13454506 original size:26 final size:26
Alignment explanation
Indices: 13454469--13454521 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13454459 GTTCACTTAG
*
13454469 GCATAAGAAGTTCATTGCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
13454495 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGAAGTTCATTCCCAGTCTAA
13454521 G
1 G
13454522 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:13455996 original size:26 final size:26
Alignment explanation
Indices: 13455967--13456018 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13455957 CTTGACTTAG
13455967 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
13455993 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13456019 AATCGGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13456899 original size:26 final size:26
Alignment explanation
Indices: 13456848--13456899 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13456838 CTGACTTAGC
*
13456848 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
* *
13456874 CATATGGAGTTCATTCCCAATTTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
13456900 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:13460552 original size:892 final size:892
Alignment explanation
Indices: 13455263--13463862 Score: 10470
Period size: 880 Copynumber: 9.7 Consensus size: 892
13455253 TCCGATGATC
* * *
13455263 GGGGGGGTGTGCGCACATGATGTGCGATGAGTACTGGTACATGGCCCTTATATTGGCCCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
13455328 CCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
13455393 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
13455458 TGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
196 CGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * **
13455523 TGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATCG
260 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * **
13455588 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGATGATTGTAT
325 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * * * *
13455653 TAATTTTCAAGCCATAAAAATGGTATTGGCACGTAAAAATATGAAGATGTACCTAAACCCACCTA
390 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * *
13455718 TCACCCTATCGATCCACGGCTTGCGTATCTCGTCTCTCTGGCAGACGTAATG-CCCGC-CAGCCC
455 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCC
* *
13455781 ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGA
520 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * *
13455846 CTGAGGGTTGAGGTAGCAGGATCGACAGTATGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGC
585 CTGAGGGTTGCGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGC
* * * *
13455911 ATCCCGCCCCTCTGGCCTG-TTGAGCGCCCGCATGCTCGTTTCGTGGCTTGACTTAGGCATACAG
649 ATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
13455975 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCGGAAT-GGATCGAGGGT
713 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGT
* * * * * *
13456039 TGCGACAGCACATGCTTGGCTCGGGCAGGCGCTGGTGTCGCATTTTTTTTCGTCGGGGCACCATC
777 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * *
13456104 G-C-------C-G---GATGGCATTGGGGTTCCGGCGATCGGGGGGGTC--
842 GTCGGGGAAGCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTGCCGG
*
13456141 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
13456206 CCTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCT
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
13456271 AGTAGCTATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACAGC-
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CT
* * * *
13456335 TCAAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATAAAAGGATCACATCTACCATGTT
195 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** *
13456399 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTG
260 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * * *
13456464 TAAAAAATAGAAAACAAGTCGTCTTGCCATAAAACTTCACGTTAAGGCTTAAGGGACCATTGTAT
325 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
13456529 CAATTTACAAGCCATGAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
390 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
13456594 CCACCCTATCGATCCACGGTTTGCGCAT-CCGATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG
455 CCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTCTGGCCGACGTAGTGCCC-CCCTCC-G
* * * * **
13456658 CCCGCACACTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC
517 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** * * * * *
13456723 AGACCGAGGGTTACACCAGTAGAATCGGCAGCACGCAGAGAGGGACCCGATCGATCCCCGACTTG
582 GGACTGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* *
13456788 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT-GGTCTGACTTAGCCATA
646 TGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT-TGACTTAGGCATA
* * * *
13456852 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATTTAAGATCAGA-CTGGACCGAG
710 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAG
* * * **
13456916 GGTTACGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA-C
774 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * *
13456980 AT--T-------GC---CGGACGACATTGAGGTTCCGGTGATCGGGGG-G--GT
839 ATCGTCGGGGAAGCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTGCCGG
* * * * *
13457019 CGGGGGGTGTGCGCACATGATGCGCGATAGGTGCTGGTACTTGGCTCTTATATTGGACCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
13457084 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13457149 AGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
13457214 CGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAATAGACAATGATCACGTCTACCATGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
13457279 GGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTG
261 GGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
*
13457344 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
325 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
13457409 GAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
390 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
13457474 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAAGTAGTGCCTGCCCATCTGC
455 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC--CCCCTCCGC
* * * * * * **
13457539 CCACCCACTCGTTTCATCGGTTGGCCTAGGTATACGGAGTTCATTCCCAGAC-AAGGATTGGACC
518 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATCAGACC
* * * * * * * * *
13457603 AGACCGAGGGCTGGGGCAGCAAGATCGACAGCATGTAGAGGGGGACCCGGCCGATCCCCTGCTTG
582 GGACTGAGGGTTGCGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * *
13457668 CGCATCCCACCCCTCTGGCCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATAT
646 TGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
** * * * * * * ** *
13457733 AAAGTTCATTCCTAGTCTAGGCATACGGAGTTCATTACCAGTCTAACATCGGATAAGACTGAGGG
711 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG
** * *
13457798 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTATCGGATTTTTCTTCGTCAGGGCACCAT
776 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* ** * * *
13457863 CGTCTGATAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGACGGG-GCC--
841 CGTCGGGGAAGCTGACCGACGGCATTGGGGTTCCGGTGATCG-GGGGTGCCGG
* * *
13457913 GGGGGGGTGTGCGCACATGATGTACGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13457978 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTTATAGGTTTGCTGCC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
13458043 AGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13458108 TGAGTTTTTAGCTGAATTTTTTTGTGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** * * *
13458173 GGGGCCAAAACTCCTTCTGAAAAAGTTTTAAAAAATCCCTAACCGTAAAAAGTTTCAAAAATCGC
261 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * *
13458238 GGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCTTTGTATG
326 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
13458303 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
391 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
13458368 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-----CT-CGCCCG
456 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCCG
* * * *
13458427 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTATTATAAGATCAGATCGGAC
521 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * ** * * *
13458492 CGAGGGTTGCAGCAGCAGGATTGGTGGCACGTAGAGGGGGACCCGACCGATCCTCGACTTGTGCA
586 TGAGGGTTGCGGCAGCAGGA-TCGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCA
* * * * *
13458557 TCCCGGCCCTCTAGCC-AGCCGAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
650 TCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
13458621 GTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC-GAACGGGACCGAGGGTT
714 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTT
** ** ** *
13458685 GTAGCAGCACAAACTGGGCTCGACCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCTCCATCG
778 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * *
13458750 CCGGAGCATCGCAGAAGAACCTAACC-AGCGGCGTTGGGGTTCCGGTGATCTGGGTGGT--C-G
843 TC-G-G----G--GAAG---CTGACCGA-CGGCATTGGGGTTCCGGTGATC-GGG-GGTGCCGG
* ** * *
13458810 GGGGGGGTGTGCGCACTTTTTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13458875 CCTCATCAAACTTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-C
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
13458939 AGTAGCCATTAAAGTGTCTGGAGATTGGGGACAACTTTTTTTCAAGATGGTCAGAAAATACTTGT
131 AGTAGCCATTAAAGTGTCT-GA-AATGGGGAC-AC-TTTTTTCAA-ATGGTCACAAAAT-CTTGT
* * *
13459004 ACACTTTTGAGTTTTTGGCCTGAATTGTTTTCT-TGCATGCCAAGCTAAAATACAAGGATCACGT
190 ACAC-TTCGAGTTTTTAG-CTGAATT-TTTT-TGTGCATGCCAA-CAAAAATACAAGGATCACG-
* * * * *
13459068 TCGACCAAG-TT-GGACCAAAAAACACGTTCCAAAAAAATTTTAAAGAAATCTCGAA-CGTAAAA
249 TCTACCAAGTTTGGGGCC--AAAACTCCTTCCAAAAAAATTTTAAA-AAATCCCGAACCGTAAAA
* * * *
13459130 AGTTT-GAAAATCTGTGAAAAATAGAAAACGAGTCATCTTTGCCATGAAACTTCATGTAAAGGC-
311 AGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCT
* * *
13459193 TAA-GGACCCAGTGTGTATGAATTTACAGGCAAT-AAAATGGCATT-GCATGCCATAAATATGAA
374 TAAGGGA-CCA-T-TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATATGAA
* * *
13459255 GATGTGGCCT-AACCCACCTATCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCG
435 GATGT-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* ** * ** * *
13459319 GCGTA--GCGACCGTCCGCTTGCCCGCTCGTTCCGTCGGTTGGCTTAGGCAAACGGAGTTCATTC
499 ACGTAGTGCCCCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
13459382 CCAGTCTAAGATCAAACCGGA-TGGAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGGGGAC
564 CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCG-CAGCACGCAGAGGGGGAC
* ** ** * * * *
13459446 TCGATTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTAGTGCTA
627 CCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT-TTC
* * *
13459511 TTGCGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCT
691 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCT
* * * *
13459575 AAGATCAGACCGGACCAATGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCAT
755 AAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * *
13459640 TTTTCTTCGCCAGGGCACCATCGTCGGGGAAGCTGACCGACGGCATTGGGGTTCTGGCGATCGGG
820 TTTTCTTCGTCGGGGCACCATCGTCGGGGAAGCTGACCGACGGCATTGGGGTTCCGGTGATCGGG
13459705 GGTGCCGAG
885 GGTGCCG-G
* *
13459714 CGGGGGGGT-TGCGCACATGAGGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 -GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
13459778 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
65 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
13459843 CAGCAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACT
130 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** * * *
13459908 TCGAGTTTTTAGCTGAA-TTTTTCATGAATGCCAAAAAAAATACAAGGATCACGTCTACCACGTT
195 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
13459972 TGGGGCCAAAACTTCATCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
260 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
13460037 TG-AAAA-A-AAAATGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTAT
325 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
13460099 GAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
390 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
13460164 CCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTTTGGCCGACGTAGTGCCCACCCATCCGC
455 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCC-TCCGC
* * * * * * * **
13460229 CCACCCACTCGTTTCGTCGATTGGCCTAGGCATATGGAGTTCATTCCCAGACAAAGATTGGACCG
518 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * *
13460294 GACTGAGGGCTGGGGCAGCAAGATCAGCAGCATGCAGAGGGGGACCCGGCCGATCCCCTGCTTGA
583 GACTGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGT
* * * ** *
13460359 GTATCCCGCCCCTCTGGCCGACTTAACGCCTACACGCTCGTTTCGTGGGTTGACTTAGGCATACA
647 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * * * *
13460424 GAGTTAATTCCCAGTCTAGGCTTACGAAGTTCATTACCAGTCTATGATCGGATCAGATCGAGGGT
712 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGT
* *
13460489 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCGGGGCACCATC
777 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** * ** * *
13460554 GTCGGTTAA-CTTGACCGGCGGCATTACGGTTCCCGTGATCGACGGG-GCC--
842 GTCGGGGAAGC-TGACCGACGGCATTGGGGTTCCGGTGATCG-GGGGTGCCGG
* * * *
13460603 -AGGGGGTGTGCACACATGATGTACGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
13460667 CCTCATCAAACCTCGAGAACCCACACCCCCTTAAAAAGCATTTGTGATTTTACAGGTTTGCTGCC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
13460732 AGTAGCCTTTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATTTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
13460797 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** * *
13460862 GGGGCCAAAACTCCTTCTGAAAAAGTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGT
261 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * * * * *
13460927 GAAAAATAGAAAGCAAGTTGTCTTGCCATGAAACTTCAAGTGAAGGCTTCAGGGACCTTTGTATG
326 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
13460992 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCAACCTAC
391 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
13461057 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACTG-CCCGC-CCGCCCG
456 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCCG
* * * *
13461120 CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGAC
521 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* ** * * *
13461185 TGAGGGTTGCAGCAGCAGGATCGGTGGCACGCAGCGGGGGACCCAACCGATCCTCGGCTTGTGCA
586 TGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCA
* * * * * *
13461250 T-CCGGCCCTCTGGTCGGCCGAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
650 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
13461314 TTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGA-CGGGACCGAGGGTTG
715 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTG
** ** ** * * * *
13461378 TAGCAGCACAAACTGGGCTCGACCACGTGCTGGTGCCGCATTTTTCTTCATCGGGGCTCCATCGC
779 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * *
13461443 CGGAGCATCGCCGGATAACCTGACCGGCGACGTTGGGGTTCCTGTGATC-GGGGTGGCC--
844 CGG-GGA-AG-C---TGACC-GA-CGGC-A--TTGGGGTTCCGGTGATCGGGGGT-GCCGG
* * * *
13461501 GGGAGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCTTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13461566 CGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
13461631 AGTAGCCATTAAAGTGTCTGGAATGGGGACACATTTTTCAAATGGTCAGAAAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13461696 CGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACTAAAATACAAGGATCACATCTACCAAGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * * * *
13461760 GGGACTAAAACACCTACCAAAAAAATTTTAAAAAATCCTGAATCGCAAAAAGTTTTAAAAATCTT
261 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* *
13461825 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATG
326 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
13461890 AATTTACAGGCAATAAAAATGGCATTGGCACGTATAAATATGAAGATGTGCCTAAACCCACCTAC
391 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
13461955 CACCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTGGCCGACGTAGCG-CCCGC-CCGCTCG
456 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCCG
* ** * *
13462018 CCCGCTCGTTTCATCAATTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAAACCGGA-
521 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * * *
13462082 TGGAAGGTTACGGTAGCAGGATCGACGGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTTTGC
586 T-GAGGGTTGCGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGC
* * * * *
13462147 ATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTTG-TGCGATTGGGTTGACTTAGGCGTACG
649 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG--TGGGTTGACTTAGGCATACG
* * * * * *
13462211 AAGTTCATTCTCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCAATGG
712 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGG
* ** * *
13462275 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGCACCGCATTTTTCTTCGCCAGGGCACCAT
776 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * ** *
13462340 CGTCGGAGAAGCTGACCGGCGGCATTGGGGTTCCGGCAATTGGGGGTGCCGAG
841 CGTCGGGGAAGCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTGCCG-G
* * * *
13462393 CGGGGGG-GTGCGCACATGAGGTGGGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
13462457 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
13462522 AGCAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
13462587 TGAGTTTTTAGCTGAATTTTTTTATGAATGCCAAAAAAAATGCAAGGATCACATCTACCAAGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
13462652 GGGGCCAAAACTTCGTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGT
261 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * * *
13462717 G-AAAA-A-AAAATGAGTCATCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATC
326 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
13462779 AATTTACAAGCCATAAAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTGAACCCACCTA
391 AATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * **
13462843 CCACCATATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTTGGC
455 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCC-TCCGC
* * ** *
13462908 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTACTCCCAGTCTAAGATTGGACCA
518 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
** * * * * * *
13462973 GACCAAGGGTTGCGACAGCAGAATCGGCAGCATGTAGAGGGGGACCCAACCGATCCCTGAG-TTG
583 GACTGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCG-GCTTG
* * *
13463037 CT-CATCCAGGCCCTCTGGCCGACT-AGACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
646 -TGCATCCCGCCCCTCTGGCCGACTGAG-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
13463100 ACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGATCATTCCCAGCCTAAGATCGGATGGGACCGA
709 ACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGGACCGA
*
13463164 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAC
773 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * ** * * ** *
13463229 CATCGTCGTAGCATCGCTGGAGAACCTAACCGGTGGCGTTGGGGTTTCGACGATCGGGGGGGCC-
838 CA---TC---G--TCG--GG-GAAGCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTGCCG
13463293 G
892 G
* *
13463294 GGGGCGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
13463359 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC-------ATTTTACAGGTTTGCTGCA
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13463417 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13463482 CGGGTTTTTAGCTGAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* ** **
13463547 GGGGCAAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGT
261 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * * *
13463612 GAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAGGGGACCATTGTATG
326 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
13463677 AATTTACAGGCCATAAAAATGGCATTGGC--GCATAGAAATATGAAGATGTGCCTAAACCCACCT
391 AATTTACAAGCCATAAAAATGGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
13463740 ACCACCTTATCGATCCACGGCTTGCGAATCCCGTTTCTCTGGCCGGCCTAGTG-----C-CCGCC
454 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCC
* * * * * *
13463799 CGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGTGTTGATTCCTAGTCTAAGATCAAACCG
519 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
13463863 ATCCCCGGCT
Statistics
Matches: 6647, Mismatches: 891, Indels: 356
0.84 0.11 0.05
Matches are distributed among these distances:
875 2 0.00
876 254 0.04
877 10 0.00
878 397 0.06
879 91 0.01
880 739 0.11
881 13 0.00
882 1 0.00
883 1 0.00
884 3 0.00
885 260 0.04
886 6 0.00
887 170 0.03
888 321 0.05
889 378 0.06
890 93 0.01
891 207 0.03
892 574 0.09
893 563 0.08
894 297 0.04
895 217 0.03
896 58 0.01
897 130 0.02
898 572 0.09
899 230 0.03
900 160 0.02
901 30 0.00
902 128 0.02
903 54 0.01
904 121 0.02
905 48 0.01
906 31 0.00
907 73 0.01
908 114 0.02
909 22 0.00
911 4 0.00
912 140 0.02
913 132 0.02
914 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCCG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
TGAGGGTTGCGGCAGCAGGATCGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCAT
CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
GGGAAGCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTGCCGG
Found at i:13461917 original size:898 final size:897
Alignment explanation
Indices: 13456992--13463862 Score: 8545
Period size: 898 Copynumber: 7.7 Consensus size: 897
13456982 TGCCGGACGA
* * * *
13456992 CATTGAGGTTCCGGTGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGCGCGATAGGTGCTGG
1 CATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
13457056 TACTTGGCTCTTATATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
13457121 GCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
13457186 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
13457251 ATAGACAATGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAAAT
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAAT
* * * *
13457316 CCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
324 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* *
13457381 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGA
389 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
13457446 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
454 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * *
13457511 CTGGCCGAAGTAGTGCCTGCCCATCTGCCCACCCACTCGTTTCATCGGTTGGCCTAGGTATACGG
519 CTGGCCGACGTAGTGCCCG-CC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * * * * * *
13457576 AGTTCATTCCCAGAC-AAGGATTGGACCAGACCGAGGGCTGGGGCAGCAAGATCGACAGCATGTA
580 AGTTCATTCCCAGTCTAA-GATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
* * * * * *
13457640 GAGGGGGACCCGGCCGATCCCCTGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCTGCACG
644 GAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAACGCCTGCACG
* *** * * * *
13457705 CTCGTTTCATGGGTTGACTTAGGCATATAAAGTTCATTCCTAGTCTAGGCATACGGAGTTCATTA
709 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
* * *** *
13457770 CCAGTCTAACATCGGATAAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
774 CCAGTCTAAGATCAGACGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
** * * * *
13457835 ATCGGATTTTTCTTCGTCAGGG--CA---C----CATCGTCTGATAACCTGACCGGCGG
839 GCCGCATTTTTCTTCGTCGGGGCCCATCGCGGAGCATCGCCGGATAACCTGACCGGCGG
* * *
13457885 CATTGGGGTTCCGGTGATCGACGGGGCCGGGGGGGTGTGCGCACATGATGTACGTTGGGTGCTGG
1 CATTGGGGTTCCGGTGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
13457950 TACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
13458015 GCATTTGTGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
13458080 TCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGGATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** *
13458145 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAGTTTTAAAAAATC
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * * * *
13458210 CCTAACCGTAAAAAGTTTCAAAAATCGCGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
325 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* *
13458275 AAGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
390 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
13458340 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
455 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
*
13458405 TGGCCGACGTAGT----GCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
520 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * **
13458466 ATTCCTATTATAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATTGGTGGCACGTAGAGGGG
585 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
* * * * * * * *
13458531 GACCCGACCGATCCTCGACTTGTGCATCCCGGCCCTCTAGCCAGCCGAACACCCGCACGCTCGTT
650 GACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAACGCCTGCACGCTCGTT
*
13458596 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTC
715 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
** ** **
13458661 TAAGATC-GAACGGGACCGAGGGTTGTAGCAGCACAAACTGGGCTCGACCATGTGCTGGTGCCGC
780 TAAGATCAG-ACGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
13458725 ATTTTTCTTCGTCGGGGCTCCATCGCCGGAGCATCGCAGAAGAACCTAACCAGCGG
844 ATTTTTCTTCGTCGGGGC-CCATCG-CGGAGCATCGCCGGATAACCTGACCGGCGG
* * * * ** *
13458781 CGTTGGGGTTCCGGTGATCTGGGTGGTCGGGGGGGGTGTGCGCACTTTTTGTGTGATGGGTGCTG
1 CATTGGGGTTCCGGTGATC-GGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
13458846 GTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACTTCAAGAACTCACACCCCCTTAAAG
64 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
13458911 AGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGGAGATTGGGGACAACT
129 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GA-AATGGGGAC-AC-
* * *
13458975 TTTTTTCAAGATGGTCAGAAAATACTTGTACACTTTTGAGTTTTTGGCCTGAATTGTTTTCT-TG
190 TTTTTTCAA-ATGGTCACAAAAT-CTTGTACAC-TTCGAGTTTTTAG-CTGAATT-TTTT-TGTG
* * * * *
13459039 CATGCCAAGCTAAAATACAAGGATCACGTTCGACCAAG-TT-GGACCAAAAAACACGTTCCAAAA
249 CATGCCAA-CAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCC--AAAACTCCTTCCAAAA
* * *
13459102 AAATTTTAAAGAAATCTCGAA-CGTAAAAAGTTT-GAAAATCTGTGAAAAATAGAAAACGAGTCA
310 AAATTTTAAA-AAATCCCGAACCGCAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCA
* * * *
13459165 TCTTTGCCATGAAACTTCATGTAAAGGC-TAA-GGACCCAGTGTGTATGAATTTACAGGCAAT-A
373 TC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CCA-T-TGTATGAATTTACAAGCCATAA
* *
13459227 AAATGGCATT-GCATGCCATAAATATGAAGATGTGGCCT-AACCCACCTATCACCCTATCGATCC
434 AAATGGCATTGGCATG-CAGAAATATGAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * ** *
13459290 ACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGCGACCGTCCGCTTGCCCGCTCGTTCCGTCG
497 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
13459355 GTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAAACCGGA-TGGAGGGTTACGGTAG
562 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAG
* * * **
13459419 CAGGATCGACAGCACGCAGAGGGGGACTCGATTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGC
626 CAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGC
* * * * ** * *
13459484 CGGTTGAGCGCCTGCACGCTAGTGCTATTGCGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCT
691 CGGCTGAACGCCTGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
13459549 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAATGGTTGCGGCAGCACATGCTG
755 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
13459614 GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCAT--C---G--TCG--GG-G
820 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC-CCATCGCGGAGCATCGCCGGAT
* *
13459669 AAGCTGACCGACGG
884 AACCTGACCGGCGG
* * * * *
13459683 CATTGGGGTTCTGGCGATCGGGGGTGCCGAGCGGGGGGGTTGCGCACATGAGGTGGGATGGGTGC
1 CATTGGGGTTCCGGTGATCGGGGG-GCCG-G-GGGGGTG-TGCGCACATGATGTGCGATGGGTGC
13459748 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
62 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
13459813 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGATACTT
127 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
** *
13459878 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTCATGAATGCCAA
192 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
13459942 AAAAAATACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTTCATCCAAAAAAATTTAAAAAA
257 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* *
13460007 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTG-AAAA-A-AAAATGAGTCGTCTTGCCATGAAAC
322 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* *
13460069 TTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCA
387 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
13460134 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTT
452 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * *
13460199 CTTTGGCCGACGTAGTGCCCACCCATCCGCCCACCCACTCGTTTCGTCGATTGGCCTAGGCATAT
517 CTCTGGCCGACGTAGTG-CC-CGC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * * * * *
13460264 GGAGTTCATTCCCAGACAAAGATTGGACCGGACTGAGGGCTGGGGCAGCAAGATCAGCAGCATGC
578 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGT
* * * * * * *
13460329 AGAGGGGGACCCGGCCGATCCCCTGCTTGAGTATCCCGCCCCTCTGGCCGACTTAACGCCTACAC
643 AGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAACGCCTGCAC
* * * *
13460394 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAGGCTTAC-GAAGTTCAT
708 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCAT
* * * * *
13460458 TACCAGTCTATGATCGGATC-AGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
772 TCCCAGTCTAAGATCAGA-CGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
13460522 GGTGTCGAATTTTTCTTCGTCGGGG--CA---C----CATCGTCGGTTAACTTGACCGGCGG
836 GGTGCCGCATTTTTCTTCGTCGGGGCCCATCGCGGAGCATCGCCGGATAACCTGACCGGCGG
** * * * * * *
13460575 CATTACGGTTCCCGTGATCGACGGGGCC-AGGGGGTGTGCACACATGATGTACGTTGGGTGCTGG
1 CATTGGGGTTCCGGTGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
13460639 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAAA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
13460704 GCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGAACACTTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
13460769 TCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** *
13460834 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAGTTTTAAAAAATC
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * * * **
13460899 CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAGCAAGTTGTCTTGCCATGAAACTTC
325 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* * *
13460964 AAGTGAAGGCTTCAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
390 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
13461029 ATATGAAGATGTTCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
455 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
13461094 TGGTCGACGTACTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
520 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * ** * *
13461159 ATTCCTAGTCTAAGATCAGATCAGACTGAGGGTTGCAGCAGCAGGATCGGTGGCACGCAGCGGGG
585 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
* * * * * * *
13461224 GACCCAACCGATCCTCGGCTTGTGCAT-CCGGCCCTCTGGTCGGCCGAACACCCGCACGCTCGTT
650 GACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAACGCCTGCACGCTCGTT
*
13461288 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTC
715 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
** ** ** *
13461353 TAAGATCAGACGGGACCGAGGGTTGTAGCAGCACAAACTGGGCTCGACCACGTGCTGGTGCCGCA
780 TAAGATCAGACGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* *
13461418 TTTTTCTTCATCGGGGCTCCATCGCCGGAGCATCGCCGGATAACCTGACCGGCGA
845 TTTTTCTTCGTCGGGGC-CCATCG-CGGAGCATCGCCGGATAACCTGACCGGCGG
* * * *
13461473 CGTTGGGGTTCCTGTGATCGGGGTGGCCGGGAGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
1 CATTGGGGTTCCGGTGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
13461538 TACTTGGCCCTTATATTGTCCCCTTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
13461603 GCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGGAATGGGGACACATTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
13461668 TCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACTA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
13461732 AAATACAAGGATCACATCTACCAAGTTTGGGACTAAAACACCTACCAAAAAAATTTTAAAAAATC
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * * *
13461797 CTGAATCGCAAAAAGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
325 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* * * * * *
13461862 ACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAGGCAATAAAAATGGCATTGGCACGTATAA
390 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
13461927 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTC
455 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * ** *
13461992 TGGCCGACGTAGCGCCCGCCCGCTCGCCCGCTCGTTTCATCAATTGGCTTAGGCAAACGGAGTTC
520 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * *
13462057 ATTCCCAGTCTAAGATCAAACCGGA-TGGAAGGTTACGGTAGCAGGATCGACGGCACGTAGAGGG
585 ATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
* * * *
13462121 GGACCCGACTGATCCCCGGCTTTTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTTG-
649 GGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAACGCCTGCACGCTCGT
* * * * * *
13462185 TGCGATTGGGTTGACTTAGGCGTACGAAGTTCATTCTCAATCTAAGCATACGGAGTTCATTCCCA
714 TTCG--TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * **
13462250 GTCTAAGATCAGACTGGACCAATGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGCACC
777 GTCTAAGATCAGACGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
13462315 GCATTTTTCTTCGCCAGGG--CA---C----CATCGTCGGAGAAGCTGACCGGCGG
842 GCATTTTTCTTCGTCGGGGCCCATCGCGGAGCATCGCCGGATAACCTGACCGGCGG
** * * * *
13462362 CATTGGGGTTCCGGCAATTGGGGGTGCCGAGCGGGGGGGTGCGCACATGAGGTGGGATGGGTGCT
1 CATTGGGGTTCCGGTGATCGGGGG-GCCG-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
13462427 GGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
63 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
13462492 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTTTGAAATGGGGACACTTT
128 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
13462557 TTTCAAATGGTCACGAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGAATGCCAAA
193 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
13462622 AAAAATGCAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCGTCCGAAAAAATTTTAAAAAA
258 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* *
13462687 TCCCAAACCGCAAAAAGTTTCAAAAATCGTG-AAAA-A-AAAATGAGTCATCTTGCCATGAAACT
323 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* *
13462749 TCACGTGATGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACT-CA
388 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCA
* * * *
13462813 AAAATATGAAGATGTGCCTGAACCCACCTACCACCATATCGATCCACGACTTGCGCATCCCGTCT
452 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
13462878 CTCTGGCCGACGTAGTGCCCGCCCGTTGGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
517 CTCTGGCCGACGTAGTGCCCGCCC----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * ** * * *
13462943 GGAGTTTACTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGACAGCAGAATCGGCAGCATGT
578 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGT
* * * * *
13463008 AGAGGGGGACCCAACCGATCCCTGAG-TTGCT-CATCCAGGCCCTCTGGCCGACTAGACAC-CC-
643 AGAGGGGGACCCGACCGATCCCCG-GCTTG-TGCATCCCGCCCCTCTGGCCGGCT-GA-ACGCCT
*
13463069 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGAT
704 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * *
13463134 CATTCCCAGCCTAAGATCGGATGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
769 CATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * *
13463199 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGTAGCATCGCTGGAGAACCTAACCGGTG
834 CTGGTGCCGCATTTTTCTTCGTCGGGGC-CCATCG-CGGAGCATCGCCGGATAACCTGACCGGCG
13463264 G
897 G
* * ** *
13463265 CGTTGGGGTTTCGACGATCGGGGGGGCCGGGGGCGGTGTGCGCACATGATGTACGATGGGTGCTG
1 CATTGGGGTTCCGGTGATC-GGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTG
13463330 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
64 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
13463395 AGC-------ATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
129 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
13463453 TTTAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATCTTTTTGTGCATGCCAACA
194 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
13463518 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAAATTTTAAAAAAT
259 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* ** *
13463583 CCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTT
324 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * *
13463648 CACGTAAAGGCTTAGGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGC--GCATA
389 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC--A
* * *
13463711 GAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGAATCCCGTTT
452 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
13463776 CTCTGGCCGGCCTAGT----GCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGTG
517 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *
13463837 TTGATTCCTAGTCTAAGATCAAACCG
582 TTCATTCCCAGTCTAAGATCAGACCG
13463863 ATCCCCGGCT
Statistics
Matches: 5139, Mismatches: 708, Indels: 265
0.84 0.12 0.04
Matches are distributed among these distances:
884 1 0.00
885 255 0.05
886 4 0.00
887 152 0.03
888 325 0.06
889 426 0.08
890 89 0.02
891 208 0.04
892 545 0.11
893 553 0.11
894 295 0.06
895 214 0.04
896 63 0.01
897 133 0.03
898 594 0.12
899 230 0.04
900 146 0.03
901 29 0.01
902 133 0.03
903 64 0.01
904 125 0.02
905 39 0.01
906 30 0.01
907 73 0.01
908 115 0.02
909 22 0.00
910 1 0.00
912 142 0.03
913 132 0.03
914 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGG
ACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAACGCCTGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
AAGATCAGACGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGTCGGGGCCCATCGCGGAGCATCGCCGGATAACCTGACCGGCGG
Found at i:13462243 original size:26 final size:26
Alignment explanation
Indices: 13462207--13462256 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13462197 GACTTAGGCG
*
13462207 TACGAAGTTCATTCTCAATCTAAGCA
1 TACGAAGTTCATTCCCAATCTAAGCA
* *
13462233 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
13462257 ATCAGACTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCA
Found at i:13463136 original size:26 final size:26
Alignment explanation
Indices: 13463096--13463148 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13463086 GTTGACTTAG
* * *
13463096 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGCCTAA
13463122 GCATACAGAGATCATTCCCAGCCTAA
1 GCATACAGAGATCATTCCCAGCCTAA
13463148 G
1 G
13463149 ATCGGATGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGCCTAA
Found at i:13465620 original size:900 final size:897
Alignment explanation
Indices: 13463879--13470899 Score: 8667
Period size: 900 Copynumber: 7.9 Consensus size: 897
13463869 GGCTTGCACA
**
13463879 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * * **
13463944 TCTAAGATCGGA-ATGAATCGAGGGTTGTGGCAGCACATACTGGGCTCGGGCATGTGCTAATGCC
66 TCTAAGATC--ACCCG-A-CTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
13464008 GCATTTTTCTTCGTCGGGCCACCATCGCGGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGG
127 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* * *
13464073 GTTTCGACGATCGGGCGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGAGTGTTGGTACTTAG
192 GTTTCGACGATC-GG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
13464138 CCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
255 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * * * *
13464203 ATATTTTACAGGTTTGTTACCAGTAGCAATTAAAGTGTCCGGAATGAGGACACTTTTTTCAAATG
320 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * *
13464268 GTCACAAAATCTTGTACAATTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAGAAATATA
385 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* ** * *
13464333 AGGATCACTTCTACCAAGTTTGGTACCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCGAACC
450 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
*
13464398 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
515 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* **
13464463 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAGATGGCATTGGCACATAGAAATATGAA
580 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * *
13464528 GATGTGCTTAAACCCACCAACTACCCTATCGATCCACAGCTTGCGTA-CCCGTCTCTCTGGCCGG
645 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* ** *
13464592 CGTAGTGCCCGCCCGTCAGCCCGT-TTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
710 CGTAGTGCCCG-CCG-CCGCCC-TCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * ***
13464656 TCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCTTGCCTAAGGATTGGCAGCA-AGCAGAGGGG
772 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GGCAGCAGGATTGGCAGCACA-CAGAGGGG
* * * * * *
13464720 GACCCGACCGATCCCCGACTTGCGCATGCCACCCCTCTGGCCGGCTGAGCACCCGCACACTCG
835 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
13464783 TTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* *
13464848 TCTAAGATCAAACCCGACTAAGGGTTGTGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
66 TCTAAGATC--ACCCGACT-AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
*
13464913 CATTTTTCTTCG-CTGGGGCACCATCGCCGGA-CATCGTCGGAGAACCTGACCGGCGGCATTGGG
128 CATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
*
13464976 GTTTCGGCGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGC-ATTGGGTGCTGGTACTTGGC
192 GTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGC
13465039 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
256 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
13465104 GATTTTATC-GGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGAACTCTTTTTTCAAATG
321 GATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * * *
13465168 ATCACAAAATCTTGTACACTTCAAGTTTTTACCTAAATTTTTTTATGCACGCCAACAAAAATACA
385 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * ***
13465233 AGGATCATGTCTACCAATTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAATTTGGAACC
450 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
** ** * *
13465298 CCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
515 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
13465363 GGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATATGAA
580 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * * *
13465428 GATATGCCTAAACCCACCTACCACCATATCAATCCACGGCTTTCGCATCTCGTCTCTCTGACCGG
645 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
13465493 CGTAATGCCCGCCTGGCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTTATT
710 CGTAGTGCCCGCC--GCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
13465558 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATTGGCATCACACAGAGGGGGAC
773 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGAC
* * * * *
13465623 CCGATCGATCCCCGGCTTGCCCATCCCGCCCCTCTAGCCGGTTGAGTGCCCGCATGCTCG
838 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
13465683 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT---TAG---A-T--C-G
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
13465737 -----G---A-CCG---AGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
66 TCTAAGATCACCCGACTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * * * ** *
13465790 TTTTCTTCGTCGGGGCACCATCCCCAGAGCATCACCGGAGAACCTGGCTGGTGGCATTAAGGTTC
131 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTT
* *
13465855 CGACGATCGGGGGTGCTGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
196 CGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
13465920 A-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
260 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
13465984 TTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
325 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
13466049 AAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
390 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
13466114 CATGTCTACCAAGTTTGGGGCTAAAACTCCTTCC-AAAAATATTTTGAAAAATCCCGCACCGTAA
455 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGTAA
* *
13466178 AAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCT
519 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
13466243 TAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATG
584 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* *
13466308 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGCCGGCGTA
649 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * * * * *
13466373 GTGCCAG-C-CCGCCCGCCCGCTCGTTCCATCGGTTGACTTAGGCATACGGAGTACATTCCCAAT
714 GTGCCCGCCGCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
13466436 CTAAGATCAGACCGGACCGAGGGTTGCAGCA-CTAAGATCGACAGCACGCAGAGGGGGACCCGGT
779 CTAAGATCAGACCGGACCGAGGGTTGCGGCAGC-AGGATTGGCAGCACACAGAGGGGGACCCGAT
* * * * *
13466500 CGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACTCTCG
843 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * * * *
13466555 TTTCATGGGATGGCTTTGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *** * * * *
13466620 TCTAGGATCAGACCAGACTGAGGGTTGCAACAGCACACGCTAGGCTTGGGCATGTGCTGGTGCCA
66 TCTAAGATC--ACCCGACT-AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * * * * * *
13466685 CATTTTTCTTCGTCAGGGCACCATCATCAGAGCATCACCAGAGAACCTGACCGGCGACGTTGAGG
128 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
** *
13466750 TACCGACGATCGGGATGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
193 TTTCGACGATCGGG-GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
13466815 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGA
256 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
13466880 GATTTTCCAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAATGA
321 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * **
13466945 TCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAA
386 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
13467010 GGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTTCGAAAAAATTTTAAAAAATCTCGATCCG
451 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* *
13467075 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAG
516 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
13467140 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
581 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * * **
13467205 ATGTACCTAAACCCACTTACCACCCTATCGATCGACGGCTTGCGCATCCAGTCTCTCTGGCCGAT
646 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
** * * **
13467270 GTAGTGCCCGCCCGCCATCCTGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTC
711 GTAGTGCCCG-CCGCCGCCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * ** * ** * ** * * ** *
13467335 TTAGTCTAAGATC-GAACTGGACTAAAGGTCACAGCAGCAAAATCGGTAGCACGTAGAGAGGGAC
774 CCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGAC
* *
13467399 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCG
838 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
13467459 TTTCATGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG-----T-----
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
13467514 TC----AT-----G-CT-GGGCT-TGG--G--CAT--T----T---GC-TG-G-T-GT--CGCAT
66 TCTAAGATCACCCGACTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *** * * ** *
13467548 TTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATTGGAGAACCTAACCGACGATATTGGGGTTC
131 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTT
** * * *
13467613 CGGTGATCGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATGGGTGATGGTACTTGGCCCTTA
196 CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
13467678 TATTGGCCCCCTATCCCTCATCAAACC-CTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
261 TATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13467742 TTACAGGTTTGCTACCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
325 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
13467807 AAAATCTTGTACACTTCAAGTTTTCAGCTGACTTTTTTTGTGTATGCCAA-AAAAATTACAAGGA
390 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGA
* * * * *
13467871 TCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGCAA
454 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
* *
13467936 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCT
519 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
13468001 TAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCATGCAGAAATATGAAGATG
584 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * * ** *
13468065 TGCATCAACCCACCTACCACCTTATCGATCCACATCTTACGCATCCCGTCTCTCTGGCCGGCGTA
649 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * *
13468130 GTGCCCG-C-CCG--CT----CT--TTCCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGT
714 GTGCCCGCCGCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
13468185 CTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAGGATTGGCAGCAC-CTAGAGGGGGACCCGGT
779 CTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACAC-AGAGGGGGACCCGAT
*
13468249 CGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
843 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
13468304 TTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * * *
13468369 TCTAAGATCGGACCGGACCGAGGGTTCCGACAGCACATGCTGGGCTCGGGCATGTGCTTGTGCCA
66 TCTAAGATC--ACCCGA-CTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * **
13468434 CATTTTTCTTCGTCGGGGCACCATCACCAGAGCATAGGTGGAGAACCTGACCGGCGGCATT-GGG
128 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
** *
13468498 TTTCGGTGATCGAAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
193 TTTCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* **
13468563 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTCAA
256 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
13468628 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGG
321 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
13468693 TCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTGTGCATGCCAACAAAAATACAA
386 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
*
13468757 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
451 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* ** * *
13468822 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAG
516 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
13468887 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-ATTTGGCACGCAAAAATATGAA
581 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGGCACGCAGAAATATGAA
* * * * *
13468951 GATGTGCCTAAACCCACCTGCCACCCTATTGATTCACGGCTTGCACATCCCG-CTTCTCTGGTCG
645 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCG
* * * * *
13469015 ACGTAATTCCCGCCGCCAG-CCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
709 GCGTAGTGCCCGCCGCC-GCCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * * *
13469079 TCCTAGTCTAATATCAGACTGGACCAAGAGTTACGGTAGCAGGATTGACAGCACGCAGAGGGGGA
772 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGA
* * ** * * *
13469144 CCCGGTTGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGGACGCTCG
837 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
13469205 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * * * * * **
13469270 TCTAAGATCGGACTGGATCAAGGGTTGCGGTAGCACATACTGGGCTCGAGCATGTGCTGGTGTAG
66 TCTAAGATC--ACCCGA-CTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
13469335 CATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGACGGTATTGGGG
128 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* * **
13469400 TTCCGACGATCGGGGGGCCGGGGGGTCTGCGCACATGATGTGCGATGCATGCTGGTACTTGGCCC
193 TTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
13469465 TTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACCCCCCCTTAAAGAGCATTTGAGA
258 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
13469530 TTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACATTTTTTTCAAATGGTC
323 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * **
13469595 ATAAAATCTTGTACACTTCGACTTTTTGGCTAAATTTTTTTACGCATGCCAACAAAAATACAAGG
388 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
** * * *
13469660 ATCTTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTGAAAAATCCC-ACATCGT
453 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA-ACCGT
13469724 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
517 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
13469789 CTTAAGGGACCATTGTATGAGTTTACAAGCCATAACAATGGCATTGGCACGTAGAAATATGAAGA
582 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * **
13469854 TGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGATCGGCG
647 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* ** * * * * *
13469919 TAGTGCCCGCCCACCTACTTGCCCACTCGTTACGTCGATTGGCTTAGGCATATGGAGTTCATTCC
712 TAGTGCCCG-CCGCCGCCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * **
13469984 CAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGTGCACAGAGGGGGACCC
775 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCC
* * * * * **
13470049 GATCGATCCTCGGCTTACGCATCTCGGCCCTCTGGCCGGTTGAGCGCCCGCTTGCTCG
840 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
13470107 TTTCGTGGTTTGACGTAGGCATATGGAGTTCATTCCTAGTCTAAG-AT-C-G-G---A-T----G
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
13470160 ----GGAT----CG---AGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTACTGGTACCACAT
66 TCTAAGATCACCCGACTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * ** ** *
13470214 TTTTCTTCGCCGGGGCATCATCGTTGGAGCATCGCTAGAGAACCTGACCAGCGGCATTGGGGTTT
131 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTT
*
13470279 CGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
196 CGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
13470344 ATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
260 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
** *
13470409 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCCAAGA-GGGGACACTTTTTTTGAAATGGTC
325 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-ATGGGGACAC-TTTTTTCAAATGGTC
* *
13470473 ACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTATTGTGCATGCCAA-AAAGAATTCAA
388 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TTGTGCATGCCAACAAA-AATACAA
* * * * *
13470536 GGATCACGTCTACCAATTTTGGGGCCAAATCTCTTTCCGAAAAAATTTTAAAAAATCCCAAACTG
451 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
13470601 TAAAATGTTTCAAAAATTGTGAAAATTAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAG
516 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
** *
13470666 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAG
581 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * *
13470731 ATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCAGT
646 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
13470796 GTAGTGCCCGCCCTCCCGTCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTC
711 GTAGTGCCCG-CC-GCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* *
13470861 CCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA
774 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
13470900 CATGCTGGGC
Statistics
Matches: 5314, Mismatches: 668, Indels: 296
0.85 0.11 0.05
Matches are distributed among these distances:
845 179 0.03
846 1 0.00
847 1 0.00
850 1 0.00
852 2 0.00
854 2 0.00
855 3 0.00
857 100 0.02
858 365 0.07
859 5 0.00
860 67 0.01
862 2 0.00
863 1 0.00
864 1 0.00
865 2 0.00
866 3 0.00
868 1 0.00
869 5 0.00
870 1 0.00
871 1 0.00
872 186 0.04
873 3 0.00
874 72 0.01
875 50 0.01
876 514 0.10
877 211 0.04
878 381 0.07
879 6 0.00
880 7 0.00
882 3 0.00
883 3 0.00
884 3 0.00
885 1 0.00
886 4 0.00
887 2 0.00
888 15 0.00
889 237 0.04
890 290 0.05
891 1 0.00
892 3 0.00
893 3 0.00
894 7 0.00
895 1 0.00
896 2 0.00
898 110 0.02
899 55 0.01
900 1148 0.22
901 682 0.13
902 200 0.04
903 47 0.01
904 322 0.06
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCACCCGACTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTT
CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCGCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGATCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
Found at i:13466603 original size:26 final size:26
Alignment explanation
Indices: 13466573--13466623 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13466563 GATGGCTTTG
* *
13466573 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
13466599 GCATACGGAGTTTATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
13466624 GGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13468361 original size:26 final size:26
Alignment explanation
Indices: 13468322--13468374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13468312 GTTGACTTAG
* *
13468322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
13468348 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
13468374 G
1 G
13468375 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:13469253 original size:26 final size:26
Alignment explanation
Indices: 13469223--13469275 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13469213 GTTGACTTAG
*
13469223 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
**
13469249 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13469275 G
1 G
13469276 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13469380 original size:901 final size:895
Alignment explanation
Indices: 13467515--13470899 Score: 4472
Period size: 901 Copynumber: 3.8 Consensus size: 895
13467505 ATACGGAGTT
* * * *
13467515 CATGCTGGGCTTGGGCATTTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCAT
1 CATGCTGGGCTCGAGCATGTGCTGGTG-CACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCAT
** * ** * * *
13467580 CATTGGAGAACCTAACCGACGATATTGGGGTTCCGGTGATCGGGGGGTCAGGGGGTGTGCGCACA
65 CGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACA
*
13467645 TGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CTGA
130 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GA
* *
13467709 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGTG
194 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
13467774 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTCAGCTGAC
259 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AA
* * * *
13467839 TTTTTTTGTGTATGCCAAAAAAATTACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTT
323 ATTTTTTGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
13467904 CCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
387 CCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
13467969 GTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AA
452 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
13468033 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCATCAACCCACCTACCACCTTATCGATCCAC
517 AAATGGCATTGGCACGCAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCAC
** * * * * *
13468098 ATCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--CCC-G-CT---C--T--TTCCATC
582 GGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCCCAGCCTGCCCGTTCGTTTCGTC
* *
13468152 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAG
647 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
*
13468217 CAGGATTGGCAGCACCTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGC
712 CAGGATTGGCAGCACC-AGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCTCGCCCCTCTGGC
13468282 CGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
776 CGGCTGAGCGCCCGCACGCTCGTTTCG-TGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTA
* * * * * * *
13468347 AGCATACGAAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCCGACAGCA
839 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCA
* * **
13468404 CATGCTGGGCTCGGGCATGTGCTTGTGCCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCAT
1 CATGCTGGGCTCGAGCATGTGCTGGTG-CACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCAT
* * * * * *
13468469 AGGTGGAGAACCTGACCGGCGGCATT-GGGTTTCGGTGATCGAAGGGGCCGGGGGGGTGTGCGCA
65 CGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCA
*
13468533 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
128 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
**
13468598 AGAACTCACACCCCCTTAAAGAGCATTCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
193 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
13468663 GTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
258 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
13468728 ATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
323 ATTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ** * *
13468793 CCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGA
387 CCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
13468858 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
452 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
13468923 AAATGG-ATTTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGATTCA
517 AAATGGCA-TTGGCACGCAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCA
* * * *
13468987 CGGCTTGCACATCCCG-CTTCTCTGGTCGACGTAATTCCCGCCGCCAGCCTGCCCGTTCGTTTCG
581 CGGCTTGCGCATCCCGTC-TCTCTGGTCGACGTAGTGCCCGCCCCCAGCCTGCCCGTTCGTTTCG
* * ** * * *
13469051 TCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAATATCAGACTGGACCAAGAGTTACGGT
645 TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGT
* * * *
13469116 AGCAGGATTGACAGCACGCAGAGGGGGACCCGGTTGATCCCCGGCTTATGCATCCCGCCCCTCTG
710 AGCAGGATTGGCAGCAC-CAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCTCGCCCCTCTG
* * * *
13469181 GCCGACTGAGCGCTCGGACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
774 GCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATAC-GAGTTCATTCCCAGTC
* * *
13469246 TAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACTGGATCAAGGGTTGCGGTAGCA
837 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCA
* * * *
13469305 CATACTGGGCTCGAGCATGTGCTGGTGTAGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCAT
1 CATGCTGGGCTCGAGCATGTGCTGGTGCA-CATTTTTCTTCGTCGGGGCACCATCGTCAGAGCAT
* * * * *
13469370 CGCCGGAGAACCTGACTGACGGTATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTCTGCGCACA
65 CGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACA
** *
13469435 TGATGTGCGATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAG
130 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
13469500 AACTCACCCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGT
195 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * *
13469565 CTGAAACGGGGACATTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGACTTTTTGGCTAAAT
260 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT
**
13469630 TTTTT-TACGCATGCCAACAAAAATACAAGGATCTTGTCTACCAAGTTTGGGGCCAAAACTCCTT
325 TTTTTGT--GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
13469694 CCGAAAATATTTTGAAAAATCCCACATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
387 CCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
13469759 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAA
452 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
13469824 CAATGGCATTGGCACGTAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCAC
517 AAATGGCATTGGCACGCAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCAC
* * * * ** *
13469889 GGCTTGCGCATCCCGTCTCTTTGATCGGCGTAGTGCCCGCCCACCTA-CTTGCCCACTCGTTACG
582 GGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC-CC-AGCCTGCCCGTTCGTTTCG
* * * * *
13469953 TCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGC
645 TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGT
* * * *
13470018 AGCAGGATCGGCAGTGCA-CAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCTCGGCCCTCT
710 AGCAGGATTGGCA--GCACCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCTCGCCCCTCT
* **
13470082 GGCCGGTTGAGCGCCCGCTTGCTCGTTTCGTGG-T---TT--G---AC--G-----T---AG---
773 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGACTTAGGCATACGAGTTCATTCCCAGTCT
* *
13470125 --GCATATGGAGTTCATTCCTAGTCTAAGATCGGA-TGGGATCGAGGGTTGTGGCAGCA
838 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACT-GGATCGAGGGTTGCGGCAGCA
* * * * **
13470181 CATGCTGGGCTCGAGCATGTACTGGTACCACATTTTTCTTCGCCGGGGCATCATCGTTGGAGCAT
1 CATGCTGGGCTCGAGCATGTGCTGGT-GCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCAT
* *
13470246 CGCTAGAGAACCTGACC-AGCGGCATTGGGGTTTCGGCGATCGAGGGGGCCGGGGGGTGTGCGCA
65 CGCTGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCA
*
13470310 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCG
128 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
13470375 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
193 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
** * *
13470440 GTCCCAAGA-GGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
258 GTCTGAA-ATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
13470504 GATTTTTATTGTGCATGCCAAAAAGAATTCAAGGATCACGTCTACCAATTTTGGGGCCAAATCTC
321 AAATTTT-TTGTGCATGCCAAAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * * *
13470569 TTTCCGAAAAAATTTTAAAAAATCCCAAACTGTAAAATGTTTCAAAAATTGTGAAAATTAGAAAA
384 CTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
13470634 CGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
449 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** **
13470699 TAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATC
514 TAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATC
* * * *
13470764 CACGGCTTGCGCATCCCGTCTTTCTGG-CCAGTGTAGTGCCCGCCCTCCCGTCC-GCCCGTTCGT
579 CACGGCTTGCGCATCCCGTCTCTCTGGTCGA-CGTAGTGCCCGCCC-CCAG-CCTGCCCGTTCGT
* * * **
13470827 TTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
641 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
*
13470892 CGGCAGCA
706 CGGTAGCA
13470900 CATGCTGGGC
Statistics
Matches: 2197, Mismatches: 257, Indels: 95
0.86 0.10 0.04
Matches are distributed among these distances:
875 2 0.00
876 138 0.06
877 160 0.07
878 382 0.17
879 3 0.00
880 1 0.00
881 2 0.00
884 1 0.00
888 14 0.01
889 261 0.12
890 287 0.13
892 4 0.00
893 1 0.00
894 2 0.00
895 1 0.00
897 3 0.00
899 2 0.00
900 203 0.09
901 568 0.26
902 158 0.07
903 1 0.00
904 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CATGCTGGGCTCGAGCATGTGCTGGTGCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATC
GCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT
TTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACGCAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCCCAGCCTGCCCGTTCGTTTCGTCGGTT
GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGG
ATTGGCAGCACCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCTCGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATAT
GGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCA
Found at i:13473998 original size:26 final size:26
Alignment explanation
Indices: 13473959--13474010 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13473949 TCTGGTCTGA
13473959 TCTTAGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
* *
13473985 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
13474011 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:13474884 original size:26 final size:26
Alignment explanation
Indices: 13474855--13474906 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13474845 CCGATCCGAT
13474855 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13474881 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13474907 GCTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13475806 original size:26 final size:25
Alignment explanation
Indices: 13475757--13475808 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13475747 CTGGTTCAAT
*
13475757 CTTAATTGGGAATGAACTATGTATG
1 CTTAATTGGGAATGAACTACGTATG
*
13475782 CTTAGATTGGGAATGAACTCCGTATG
1 CTTA-ATTGGGAATGAACTACGTATG
13475808 C
1 C
13475809 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (25 bp):
CTTAATTGGGAATGAACTACGTATG
Found at i:13476231 original size:885 final size:892
Alignment explanation
Indices: 13473452--13477565 Score: 5426
Period size: 891 Copynumber: 4.6 Consensus size: 892
13473442 NNNNNNNNNT
* * * * *
13473452 GTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTACGGTTC
1 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
* * * * *
13473517 AGGATTTTTTAAACTTTTTTCGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
66 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
* * * *
13473582 TTTTTTTGGTATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACTATTT
131 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
13473647 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAAT
196 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
13473712 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
261 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAG
*** * * *
13473777 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCATAGCCCCTTCGATCACTGGAACCCCAA
325 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAA
* * * **
13473842 TGCCGTCGGTCAGGTTCTCCGACGATGCTCGGGCGATAATGCCCCGACGAAGAAAAATGCGGCAC
389 TGCCGCCGGTCAGGTT-TCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* ** * * *
13473907 CAGCACATGCCTGAGCCCAGCATGTGCTGCCATAACCCTCGATCTGGTCTGATCTTAGACTAGGA
453 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* *
13473972 ATGAACTCCGTATTCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
518 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * *
13474037 TACGGGTGCTCAGCC-AGCCAGAGGGGTGGCATGCGCAAGCCGGGGAT--ATCCGGTCCCCTTCT
583 TACGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCT
* * * * * * ** * *
13474099 GCATGCTGTC-GTCACTACTAACAGCAACCCTTGGTCCGTCTGATCCTAGACTGTGGAATGGAAC
647 ACATGCTGCCAATC-CTACT-ACCGCAACCCTAGGTCAGTCCAATCTTAGACT-AGGAAT-GAAC
13474163 TCCATATGCCCTAA-CCAACGCGACGAACGACAGTTGGTCAAACGGGCGG-GTGGGCACTA-CAT
708 TCCATATG-CCTAAGCCAAC-CGACGAA--ACAG-TGG----A--GGCGGAG-GGGCACTAGC--
* *
13474225 CGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCT
759 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
13474290 TTATATTTCTGCATGCCAAAACCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTGAAGCCT
824 TCATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
13474355 TCAC
889 TCAC
* * * *
13474359 GTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTGTGGTTC
1 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
* * * *
13474424 GGAATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTTGGTAGACACGATCCTTGTAT
66 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
13474489 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
131 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
13474554 G-AAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
196 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
13474618 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
261 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAG
* *
13474683 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCCGATCACCGGAACCCCAA
325 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCGATCGCCGGAACCCCAA
* ** ** * *
13474748 TGCGGCCGGTCAGG-TT----C----C-CCGGTGATGGCACCCCGGTGAAGAAAAATGTGACACC
389 TGCCGCCGGTCAGGTTTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * * * *
13474803 AGCACATGCCCAACCCCAGCATGTGCTGTCGCAACCCTCAGCCCGATCCGATCTTAGACTGGGAA
454 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* *
13474868 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCAACGAAACGAGCGT
519 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
13474933 ACGGGCGTTCAACCGGCCAGA-GGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTAC
584 ACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTAC
* * * * * * * * ***
13474997 GTGCTGCCAATCCTGCTGCCACAACCCTTGGTCTGGTCCTATTTTAGACTAGGAATGAACTTTGT
649 ATGCTGCCAATCCTACTACCGCAACCCTAGGTC-AGTCCAATCTTAGACTAGGAATGAACTCCAT
* *
13475062 ATGCCTAAGCCAACCGACGAAAAGAGTGGGCGGGCGGGCAAGCGGGCACTACGCCGGCCAGAGAG
713 ATGCCTAAGCCAACCGACG-AAACAGT-GG-AGGC-GG--AG-GGGCACTA-GCCGGCCAGAGAG
** *
13475127 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGGGACATCTTCATATTTCTG
770 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
** * *
13475192 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCAC
835 CATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* **
13475250 GTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTT
1 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
* * * * *
13475315 GGGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCCAGACTTGGTAGACGTGATGCTTGTAT
66 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
* *
13475380 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTT
131 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* ** * *
13475445 GAAAAAAGTATCTACATTTCAAACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAAT
196 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
13475510 GCTCTTTAAGGGGGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGT
261 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGT
13475575 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGCCGGAACCCCAAT
326 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCGATCGCCGGAACCCCAAT
* * *
13475640 GCCGCCGGTCAGGTTATCCGATGATGCTCCGGTGATAGTGCCCCGACGAAGAAAAATGTGGCACC
390 GCCGCCGGTCAGGTT-TCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * * * *
13475705 AGTACATGCCCGACCCCAGCATGTGCTTCCGCAACCCTTGGTCTGGTTCAATCTTA-ATTGGGAA
454 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
** *
13475769 TGAACTATGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
519 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * *
13475834 GCCGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCTGGTCCCCCTCTAC
584 ACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTAC
* * * *
13475899 ATGCTGCCAATCCTGCTACCGCAACCCTCAGTTCAGTCCAATCTTAGACTGGGAATGAACTCCCT
649 ATGCTGCCAATCCTACTACCGCAACCCT-AGGTCAGTCCAATCTTAGACTAGGAATGAACTCCAT
* ** * *
13475964 ATGCCTCAGCCAACCGAC-AAA-A-T-GA-GC-GA-GTTC-CT-GCCCGTCAGAGAGACGGGATG
713 ATGCCTAAGCCAACCGACGAAACAGTGGAGGCGGAGGGGCACTAGCCGGCCAGAGAGACGGGATG
* * *
13476020 CGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATTTTTCTGCATGCCAA
778 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
13476085 TGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCAC
843 AGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
13476135 ATGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
1 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
*
13476200 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTAT
66 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
** *
13476265 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAAGCGAAGTGTACAATATTTTGTGACCATTT
131 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
13476330 CAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
196 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
13476395 GCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAG
261 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAG
* * * ** *
13476460 TACCAGCACCCATTGCACATCGTGTGCGCACA-----AC--CCCCCCGATCGTTGAAACCCCAAT
325 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAAT
* * * * * *
13476518 GCCGCCGATCAGGTTCCCCGGCGATGCTCGGGCGATGGTGCCCCGACGAAGAAAAAATACGGCAC
390 GCCGCCGGTCAGGTT-TCCGACGATGCTCCGGTGATGGTGCCCCGACGAAG-AAAAATGCGGCAC
*
13476583 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
453 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* * *
13476648 ATGAAGTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
518 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
13476713 TGCGGGCGCTTAGTCGGCCAGAGGGGCGGGAAGCGCAAGCCAGGGATCGACCGGGTCCCTCTCTA
583 TACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTA
* * * * * * *
13476778 CGTGCTACCAATCCTACTGCCGCAACCTTTAGTTCAGTTCAATCTTAGACTAGAAATGAACTCCA
648 CATGCTGCCAATCCTACTACCGCAACC-CTAGGTCAGTCCAATCTTAGACTAGGAATGAACTCCA
* * * * *
13476843 TATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGACGGGCAGGCACTACGCCGGCCTGAGA
712 TATGCCTAAGCCAACCGACGAAA-CAG-TGG-AGGCGGA--GG--GGCACTA-GCCGGCCAGAGA
* * * *
13476908 AACAGGATGCGCAAGTCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCT
769 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * *
13476973 ACGTGCCAAAGCCATTTTTAT-GCTTGTAAATTCATACAATGGTCTCTTAAGTCTTCAC
834 GCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* ** *
13477031 GTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTTTAACTTTTTACGGTTT
1 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
* *
13477096 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGCAGACATGATCCTTGTAT
66 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-
13477161 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
130 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
13477226 TGAAAAAAGTGTCTCCATTTCAGCCACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
195 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
13477291 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
260 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAA
* * *
13477356 GTACCAGCACCCACCGCATATCATGTGCGCACACCCCCCCGGCCCTACCGATCGCCGGAACCCCA
324 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGCCGGAACCCCA
* * *
13477421 ATGCCGCCGGTCAGG-TTCCTGGCAATGCTCCGACT-ATGGTGCCCCGACGAAGAAAAATGCGGC
388 ATGCCGCCGGTCAGGTTTCC-GACGATGCTCCG-GTGATGGTGCCCCGACGAAGAAAAATGCGGC
** * *
13477484 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCTGATCCGATCTTAGACTTG
451 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
*
13477549 GAATGAACTCCATATGC
516 GAATGAACTCCGTATGC
13477566 CTAAGCCAAC
Statistics
Matches: 2818, Mismatches: 326, Indels: 130
0.86 0.10 0.04
Matches are distributed among these distances:
878 64 0.02
879 61 0.02
880 191 0.07
881 4 0.00
883 1 0.00
885 402 0.14
886 51 0.02
887 5 0.00
888 6 0.00
889 2 0.00
890 1 0.00
891 404 0.14
892 109 0.04
893 12 0.00
894 40 0.01
895 176 0.06
896 191 0.07
897 298 0.11
898 3 0.00
899 1 0.00
900 4 0.00
901 84 0.03
902 182 0.06
903 92 0.03
904 32 0.01
905 30 0.01
906 192 0.07
907 180 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATG
CCGCCGGTCAGGTTTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAC
GGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACAT
GCTGCCAATCCTACTACCGCAACCCTAGGTCAGTCCAATCTTAGACTAGGAATGAACTCCATATG
CCTAAGCCAACCGACGAAACAGTGGAGGCGGAGGGGCACTAGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
Found at i:13476665 original size:26 final size:26
Alignment explanation
Indices: 13476636--13476688 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13476626 CTGGTCCGAT
*
13476636 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13476662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13476688 C
1 C
13476689 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13478244 original size:705 final size:705
Alignment explanation
Indices: 13476881--13478268 Score: 2102
Period size: 705 Copynumber: 2.0 Consensus size: 705
13476871 GGGCGGGCGG
* * *
13476881 ACGGGCAGGCACTACGCCGGCCTGAGAAACAGGATGCGCAAGTCGTGGATCGATAGGGTGATAGG
1 ACGGGCAGGCACTACGCCGGCCAGAGAAACAGGATGCGCAAGCCGTGGATCGATAGGGTGATAGC
* *
13476946 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGCTTGTAAATTCATACA
66 TGGGTTTAGGCACATATTCATATTTCTACATGCCAAAGCCATTTTTATGCTTGTAAATTCATACA
* * *
13477011 ATGGTCTCTTAAGTCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** ** * **
13477076 TTTTTAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
196 TTTGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* *
13477141 GGCAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
261 GGCAAACATGATCCTTGTATTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
13477206 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGCCACTTTAATGGCTACTGGTAG
326 TACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
13477271 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
* * *
13477336 GGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCATATCATGTGCGCACACCCCCCCGGCCC
456 GGGGACAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGCGCGCACACCCCCCCGGCCC
* * *
13477401 TACCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCCTGGCAATGCTCCGACTATGGTGCCCC
521 -ACCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCCCGGCAATGCTCCGACGATGGTGCCCC
* * *
13477466 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCT
585 GACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCAAAACCCTCGGTCC
* *
13477531 GATCCGATCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA
650 GATCCGATCTTAGACTGGGAATAAACTCCATATGCCTAAGCCAACCGACGAAACGA
* * * *
13477587 ACGGGC-GAGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAG
1 ACGGGCAG-GCACTACGCCGGCCAGAGAAACAGGATGCGCAAGCCGTGGATCGATAGGGTGATAG
* * * * * *
13477651 CTTGGTTTAGGCACATATTGATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCGTA
65 CTGGGTTTAGGCACATATTCATATTTCTACATGCCAAAGCCATTTTTAT-GCTTGTAAATTCATA
13477716 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
129 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
13477781 TTTTTGAAACTTTTTAGGGTTCAGAATTTTTTAAACTTTTTTCAGAAGGATTTTTGG-CCCAAAC
194 TTTTTGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
*
13477845 TTGGTAAACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
259 TTGGCAAACATGATCCTTGTATTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
13477909 TTTAGAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGGC
324 TGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGC
13477974 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
13478039 AGGGGGATAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCATGG
454 AAGGGGACAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGCGCGCACACCCCCC-CGG
* * ** * *
13478104 CCC-CCTATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGTTCC-AGGGATGGTG
518 CCCACCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC-CCGGCAATGCTCCGA-CGATGGTG
** * **
13478167 CCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCG
581 CCCCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCAAAACCCTCG
*
13478232 GTCCGGTCCGATCTTAGACTGGGAATAAACTCCATAT
646 GTCCGATCCGATCTTAGACTGGGAATAAACTCCATAT
13478269 ACTTAGACTT
Statistics
Matches: 612, Mismatches: 65, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
704 34 0.06
705 327 0.53
706 128 0.21
707 123 0.20
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (705 bp):
ACGGGCAGGCACTACGCCGGCCAGAGAAACAGGATGCGCAAGCCGTGGATCGATAGGGTGATAGC
TGGGTTTAGGCACATATTCATATTTCTACATGCCAAAGCCATTTTTATGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
GGCAAACATGATCCTTGTATTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
GGGGACAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGCGCGCACACCCCCCCGGCCC
ACCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCCCGGCAATGCTCCGACGATGGTGCCCCG
ACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCAAAACCCTCGGTCCG
ATCCGATCTTAGACTGGGAATAAACTCCATATGCCTAAGCCAACCGACGAAACGA
Found at i:13479325 original size:894 final size:894
Alignment explanation
Indices: 13477536--13480959 Score: 4925
Period size: 895 Copynumber: 3.8 Consensus size: 894
13477526 GGTCTGATCC
* **
13477536 GATCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCGACG-AA--A-CGAACGGGCGAGC
1 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGC
* * *
13477597 ACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGCTTGGTTTAGG
66 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
13477662 CACATATTGATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCGTACAATGGTCCCT
131 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
13477727 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
196 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
13477792 TTTTAGGGTTC-AGAATTTTTTAAACTTTTTTCAGAAGGATTTTTGGCCCAAACTTGGTAAACAT
261 TTTTAGGGTTCGAG-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACGT
* *
13477856 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTTTAGAAGATTT
325 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
13477921 TGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
390 TGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
**
13477986 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGATAATA
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
13478051 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCAC-ACCCCCCATGG--CCCCCTATC
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCC--GGCCCCCCCGATC
** * ** * * *
13478113 ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGTTCC-AGGGATGGTGCCCCGGTGAA
583 GCCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGGCGAA
* * *
13478177 GAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCT-GTCGCAACCCTCGGTCCGGTCC
647 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACT-GCAACCCTCGGTCCGGTCC
* * * *
13478241 GATCTTAGACTGGGAATAAACTCCATATACTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAA
711 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAA
* * ** * * *
13478306 CCCACGAAACGAGCGTGTGGGCGCTCAGTCAGCCAGAGGGGTGGGATG-GGAAGGCCGGGGGTTG
776 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAA-GCC-GGGATCG
** * * *
13478370 GTCGGGTCCCCCTCTACGTGCTATTGATCCTGCTGCCACAACCCTCAAT-CCGGTCT
839 ACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTC-ATCCCAGTCT
*
13478426 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGC
* *
13478491 ACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
13478556 CACATCTTCATATGTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
13478621 TAAG-CTTGCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TAAGCCTT-CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
13478685 TTTTTAGGGTTCG-GAATTGTTTAAAATTTTTTCAGAAGGAATTTTGGCCCAAACTTGGTAGACG
260 TTTTTAGGGTTCGAG-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACG
13478749 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
324 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
13478814 TTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGT
389 TTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
13478879 AAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCAAGGTTTGATGAGGGATCGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
13478944 ATAAGGGCCAAGTACCAGCAACCATTGCATATCATGTGCGCACAACCCCCCGGCCCCCCCGATCG
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCCGATCG
* * * *
13479009 CTGGAACCCCAATGCCGTCGGTAAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGA
584 CCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGA
* * * *
13479074 AAACTACGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGAT
649 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGGTCCGAT
*
13479139 CTTAGACTTGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCC
714 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCC
*
13479204 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCGACCG
779 ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCC-GGGATCGACCG
* * *
13479269 GGTCCCCCTCTACGTGCTGTCGATGCTGCTGGCCGCAA-CTTCATCCCAGT-T
843 GGTCCCCCTCTACGTGCTGTCGATCCTGCT-GCCACAACCCTCATCCCAGTCT
* *
13479320 GATCTT-GCACTGTGAATGAACTCCATATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGAG
1 GATCTTAG-ACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAG
* * *
13479384 TACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAT
65 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
13479449 GCACATCTTCATATTTTTTCATGCCAAAGCCATTTTTATGGCTAGTAAATTCATAAAATGGTCCC
130 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
13479514 TTAAGCCTGCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* ** * *
13479579 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAATCTTGGTAGAAG
260 TTTTTAGGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACG
* **
13479644 TGATACTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
324 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
13479709 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
13479774 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
13479839 ATAAGGGCCAAGTACCAGCACCCATCACATATCATTTGCGCACAACCCCCCGACCCCCCCGATCG
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCCGATCG
* *
13479904 CCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCTGACGATGGTGCCCTGGCGAAGA
584 CCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGA
* * * * *
13479969 AAACTGTGGCACCAGCACATGCCCGAGCCCAGCACGTGCTACTGCATCCCTCGGTCTGGTCCGAT
649 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGGTCCGAT
* *
13480034 CGTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATTAACTCCGTAAGCCTAAGTCAACCC
714 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCC
* * *
13480099 ACGAAACGAGCTTGCGGGCGC-CAAACCTGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCGACC
779 ACGAAACGAGCGTGCGGGCGCTC-AGCCAGCCAGAGGGGCAGGATGCGTAAGCCG-GGATCGACC
* * * **
13480163 GAGTCCTCCTCTACGTGCTG-CTGATCCTACTGCCACAACCCTCAGTCTGA-TCT
842 GGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCACAACCCTCA-TCCCAGTCT
* * * * * * *
13480216 AATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGGTGGGC
1 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGC-GG-GCG-
* * *
13480281 AGGCACTACGTCGCCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
63 A-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
13480346 TAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
127 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
13480411 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTGCACGATTTTTGA
192 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* ** * * *
13480476 AACTTTTT-GCTGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTAGCCCCAAACTTAGTA
257 AACTTTTTAG-GGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-GGCCCAAACTTGGTA
* * * *
13480540 GACGAGACCCTTGTATTTTTGTTGGCATGCACAAAACATTTCAGCTAAAAACTCGAAGTGTACAA
320 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
13480605 GATTTTGTGACCATTTG-AAAAAATTTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAAC
385 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
13480669 CTGTAAAATCTCAAATGGTCTTTAAAGGGGTGTGAGTTCTAGCA-GTTTGATGAAGGATAGGGGG
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGG
* * * *
13480733 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCCCACACCCCCCCGGCTCCCCC
514 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCC
* * ** * * * * * *
13480798 GATCACCGGAACCCTAATGTTGTCGGTCAGGTTCTCTGGCAATGCTCCGACGATGGTGCCCCGAC
579 GATCGCCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
* * * * * **
13480863 GAAGAAAAAGGCGGCACCAGCACATGCTCGAGCCCAGTATGTGCTACCGCAACCCTCGGTTCACT
644 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGGT
* *
13480928 CC-AGTCTTACACTGGGAATGAACTCCGTATGC
709 CCGA-TCTTAGACTGGGAATGAACTCCATATGC
13480960 CTAAGCCAAT
Statistics
Matches: 2287, Mismatches: 214, Indels: 57
0.89 0.08 0.02
Matches are distributed among these distances:
890 44 0.02
891 2 0.00
893 7 0.00
894 764 0.33
895 801 0.35
896 62 0.03
897 3 0.00
898 3 0.00
899 293 0.13
900 307 0.13
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGC
ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTAGGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCCGATCGCC
GGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGGTCCGATCT
TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCGGGATCGACCGGGT
CCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCATCCCAGTCT
Found at i:13482509 original size:26 final size:26
Alignment explanation
Indices: 13482480--13482530 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13482470 CCGATCCGAT
13482480 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
13482506 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13482531 GCCTATGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:13483399 original size:26 final size:25
Alignment explanation
Indices: 13483370--13483444 Score: 114
Period size: 26 Copynumber: 2.9 Consensus size: 25
13483360 CCGATCCGAT
13483370 CTTAGACTGAGAATGAACTCCGTATC
1 CTTAGACTG-GAATGAACTCCGTATC
*
13483396 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGG-AATGAACTCCGTATC
13483422 CTTAGACTGGGAATGAACTCCGT
1 CTTAGACT-GGAATGAACTCCGT
13483445 TTGCCTAACC
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 1 0.02
26 43 0.93
27 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATC
Found at i:13485070 original size:26 final size:26
Alignment explanation
Indices: 13485041--13485092 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13485031 CTGGTCCGAT
*
13485041 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13485067 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13485093 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13485969 original size:26 final size:26
Alignment explanation
Indices: 13485933--13485985 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13485923 CCGGTCTGAT
13485933 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
13485959 CTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13485985 C
1 C
13485986 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13487755 original size:26 final size:26
Alignment explanation
Indices: 13487717--13487769 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13487707 CAAGTTTGAT
* **
13487717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACAACGTATG
13487743 CTTAGACTAGGAATGAACAACGTATG
1 CTTAGACTAGGAATGAACAACGTATG
13487769 C
1 C
13487770 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACAACGTATG
Found at i:13488665 original size:26 final size:26
Alignment explanation
Indices: 13488614--13488665 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13488604 CTGGTCCGAT
* *
13488614 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
13488640 CTTAAACTGGGAATGAACTTCATATG
1 CTTAAACTGGGAATGAACTCCATATG
13488666 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:13488919 original size:897 final size:896
Alignment explanation
Indices: 13483422--13491201 Score: 9687
Period size: 904 Copynumber: 8.7 Consensus size: 896
13483412 ACTCCGTATG
* * * * *
13483422 CTTAGACTGGGAATGAACTCCGTTTGCCTAACCCAACCGACAAAACGACCTGCTCGGCGGGCAGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGGCGGG
* ** * * *
13483487 CGGGCACTACGCCGGCCAGAGAGGTGGGATACGTAAGCCGTGGATCGATACGGTGGTAGGTGGGT
58 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
13483552 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
123 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
13483617 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTAA
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
13483682 AAACTTTTTACTGTTCTG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCTCGAACTTGGT
253 AAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
13483746 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAATGTACA
317 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
13483811 AGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAAACACTTTAATGGCTAGTGGCAGCAAA
382 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
**
13483876 CCTGTAAAATCTCAAATGCTCTTTAAACGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
447 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * *
13483941 CCAATATAAGGAACAAGTACCAGAACCCATCGCACATCATGTGCGCACA--CCCCAGGCCCCCCG
512 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
*
13484004 ATCGCCGGAACCGCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
577 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
* * * *
13484069 AAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATGTCCTGCCGCAACCCTTGGTCCGATC
642 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * * *
13484134 CAATTTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCA
707 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
13484199 ACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCAGCGGGGCGGGATGCGTAAGTCGAGGATCG
772 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* ** *
13484264 GTCGGGTCCCCCTCTGCGTGCTGCCA-ATCCTACTGTCGATCTTGCTACCGCAA-CCTCCTTCCA
837 ATCGGGTCCCCCTCTGCGTGCTGCCAGAT-C--C--T-G--C-TG---CCGCAACCCTCAGTCCG
**
13484327 GTCGGAT
890 GTCCAAT
** * * *
13484334 CTTAGTGTGGGAATGAACTCCGTATCCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCCGA
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-C-A
* * *
13484399 CGGGCATTACGTTGGCCAGAGAGACGAGATGCGCAAG-CGTGGATCGATAGCGTGGTAGGTGGGT
64 ----C--TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * ** *
13484463 TTAGGCGCATCTTCGTATTTATGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGG
123 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
13484528 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGATTCGTTTTTTATTTTGCACGATTTTTG
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
13484593 AAACTTTTTGA-GGTTCGAAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
253 AAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
13484657 AGACGTGATCCTTGAAATTTTGTTGGCATGCACAAAAAAATTCATC-AAAAACTCGAAGTGTACA
317 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
13484721 AGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAAACACATTAATGGCTACTGGCAGCAAA
382 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
13484786 CCTGTAAAATCTCAAATGCTCTTTAA--GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
447 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
13484849 CCAAT-T------CAAGTACCAGAACCCATCGCACATCATGTGTGCACA-CCCCACGGCACCCCC
512 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCC
* * * *
13484906 GATCACCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-AG
576 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA-
* * * * * *
13484970 TGAAGAAAAATGTGGCACCAGTACATGCCCGAGCCAAGAATGTGCTGCCGCAACCCTCGGTCTGG
640 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
13485035 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGTCTAAGT
705 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * *
13485100 CAACTCACGCAACGAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGCAGGATGTGCAAGCGGGGGAT
770 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * *
13485165 CGGTCGGGTCCCCGTCTGTGTGCCGCC-GATCATGCTACCGTAACCCTC-GATCTGGTCCAAT
835 CGATCGGGTCCCCCTCTGCGTGCTGCCAGATCCTGCTGCCGCAACCCTCAG-TCCGGTCCAAT
* * * ** * * *
13485226 CTTAGACTGGGAGTAAACTCTATATGCCTAAGCAAACCAACGAAACGA----ACGGGCGGGCACT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * * * * *
13485287 ACGCCAGCCAGAGAGCCGGGAAGCGCAAGGCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAC
66 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** *
13485352 ATCTTCATATTTCTGTGTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * ** *
13485417 GCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCAAGATTTTCAAAACTATT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * * *
13485482 TACGGTTTGGGATTTTTTAAAATTTTTTCGGAATGATTTTTTGCCCCAAACTTGGTATACGTGAT
261 TACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
13485547 CCCTGTATTTTTGTTGGCATGCACAAAAAACTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGT
326 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
13485612 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAACAAACGTGTAAAA
391 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
13485677 TCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGCCCAATATAA
456 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
13485742 GAGCCAAGTACCAGCACCCATCGCACATCATGCGTGCGCACCCCCCCGGCCCCCCCGATTGCCGG
521 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGG
** * * * *
13485807 AACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGGCGATGGCGCCCTGACGAATAAAAA
585 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * *
13485872 TGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
650 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * *
13485937 GACTGGGAATGAACTTCGTATGCTTAGAGTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
715 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
13486002 AACGAGCGTGCGGGAGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGAGTC
780 AACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * **
13486067 CCCCTCTGCGTGTTGCC-GATCATGCTGCCGCAACCCTCAGT-CGAGTCTGAT
845 CCCCTCTGCGTGCTGCCAGATCCTGCTGCCGCAACCCTCAGTCCG-GTCCAAT
* * *
13486118 CTTAGACTAGGAATGAACTCCGTATGCCTCAGCCAACCGACGAAACGAACAGGCGGGCGGGCGGA
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--A
* * * *
13486183 CGGGTACTTCGCCAGCCAGAGAGACGGGACGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGGGT
64 C---TACGTCG---GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
13486248 TTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
123 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
13486313 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
13486378 AAAAC-TTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
253 -AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
13486442 AGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGTTAAAAACTCGAATTGTACA
317 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
13486507 AGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
382 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
13486572 CCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGTG
447 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
13486637 CCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCTC
512 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-C
* * *
13486702 AATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCC-GTCAATGCTCCGACGATGGTGCCCCGA
576 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT-GATGCTCCGACGATGGTGCCCCGA
* * * * *
13486766 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATATGCGGTCGTAA-CC-C--T-C-G
640 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
13486825 ---G----T---C--GG---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATG-CTAAGT
705 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
13486869 CAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGTGCGATGCGCAAGCCGGGGAT
770 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * *
13486934 CGATCGGGTCCCCCTTTGCGTGCTGTC-GATCCTACTGCTGCAACCCTCGGTCCGAT-CAGAT
835 CGATCGGGTCCCCCTCTGCGTGCTGCCAGATCCTGCTGCCGCAACCCTCAGTCCGGTCCA-AT
* * * * * **
13486995 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAATGAAATGAGCGGGCGGGCAAGCACT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * *
13487060 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATATGGTGGTAGGTGGGTTTAGGTAC
66 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
**
13487125 ATCTTCATATTT-TTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
13487189 AGCCTTCACGTGCAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
13487254 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCGAACATT-GTTGACGTG
260 TTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTG
* * * *
13487318 A-CCGTTGTATTTTTGTTGGCATGTGA-AAAAAAATTCAGCTAAAAATTGGAAGTGTACAACATT
324 ATCC-TTGTATTTTTGTTGGCATG-CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
13487381 TTGTGACCATTTGAAAAAAATGTTCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACCTGT
387 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
13487446 AAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
452 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * * * *
13487511 ATAAGGGCCAAGCACCAGCACCCATCGTACATCATGTTCGCAGACCTGCCCCGGCCCCTCGATCA
517 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCGATCG
* * * * * * *
13487576 TCAGAACCCTATTACCATCGGTCAGGTTCTCCGACGATGCTCCGGTGATGCTTCGACGATGGTGC
581 CCGGAACCCCAATGCCGTCGGTCAGG---T-------T-CTCCGGTGATGCTCCGACGATGGTGC
* * * * ** *
13487641 CCCGACGAAGAAAAATGCGGTACCAGAACATGCCTGAGCCCAGTATGTGCTGCCATAACCCTCAG
635 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
** ** * **
13487706 TCAAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACAACGTATGCC
700 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
13487771 TAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCC-AGCCAGATGGGCGGGATGCGCAAGCT
765 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCC
** * * * * * **
13487835 GGGGATCGAAAGGGTCCCCCTCTGTGTGCTGTC-GATCCTGCTACAGTAACCCTTGGTCCGGTCC
829 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAGATCCTGCTGCCGCAACCCTCAGTCCGGTCC
13487899 AAT
894 AAT
* * * * *
13487902 CTTATACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACCAAACGAGCGGGCAGGCAGGCACT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * *
13487967 ACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAC
66 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
13488032 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGCTCCCTCAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
13488097 GCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * *
13488162 TATGATTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGAT
261 TACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
13488226 CCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGT
326 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
13488291 GACCATTTGACAAAAGTGTCCCCATTTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
391 GACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
13488356 ATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
455 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
13488421 AGGACCAAGTACCAGCTCCCATCACACATCATGTGCGCACACCCCCCCCGGCTCGCCCGATCGTC
520 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGC-CCCCCGATCGCC
* * * * * * * * * *
13488486 GAAACCCCAATGCCATCTGTCAGGTTCTTCGGTGACGCACTGGCGAAGGTGCCCCGGCGAAGAAA
583 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * *
13488551 AATGCGGCACCAACACATGCCCGAGACCAACATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCT
648 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
* * * * *
13488616 TAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTTCATATGGCTAAGTCAACCCAT
713 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
13488681 AAAATGAGCGTACAGTCGCTCAGCCGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGCTCGGG
778 GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
* * * * * ** *
13488746 TCCCCTTCTGCATGCTG-CATATCCTGCTGCCACCACCCTCAGTTTGGTCTAAT
843 TCCCCCTCTGCGTGCTGCCAGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAAT
* * *
13488799 CTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGGGCACT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
*
13488864 ACGTCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
13488929 ATCTTCATATTTCTTCGTGCCGAA-GCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTA
131 ATCTTCATATTTCTGCATGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
13488993 AGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* *
13489057 TTGCTGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
260 TTACGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
13489121 ATCCTTGTATTTTT-TTTGAAGTGCACAAAAAAATTCAGCTAAGAACTCAAAGTGTACAAGATTT
324 ATCCTTGTATTTTTGTTGGCA-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * **
13489185 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAATAAACCTGTA
388 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
13489250 AAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
453 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
13489315 CAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCGCCCGGCCACCCCGATTG
518 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCC-CCCCGATCG
** *
13489380 CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCTCCGAC---G-
581 CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * *
13489441 ---AT--GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTTCGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * *
13489501 CTTAGA-TAGGGAATGAACTCCGAATGCTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACA
711 CTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * ** * * * ** ** *
13489565 CATGAAACGAGCGTGCGGGCACTTAGTTGGCCAGAGGGACGGGATGCGTAAGCCAAGGATTTACC
775 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * *
13489630 GGGTCCCCCTCTGCGTGTTGCCA-ATCCTGCTGCCGTAACCCTCAGTCTGGTCCAAT
840 GGGTCCCCCTCTGCGTGCTGCCAGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAAT
*
13489686 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGTGGGCACT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* ** * *
13489747 AAGTCGAACAGAGAGACGGGATGCGCAAGCCGTTGATAGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
13489812 ATCTTCCTTTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
13489877 GCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* ** * * *
13489942 TACGGTTC-AGATTTTTTAAAGTTTTTTCAGAAGTAGTTTTGGCCCCAAACTTGGTTGACATGAT
261 TACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
13490006 CCTTGTAATTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAAATTGAAGTGTACAAGATTTTGT
326 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
13490071 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGTAAACCTGTAAAA
391 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
13490136 TCTCAAATGCTCTTTTTAAGGGGGTGTGAGTTCTCTAGGCTTGATGAGGGATAGGGGGCCAATAT
456 TCTCAAATGCTC--TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * *
13490201 AAGGGCCAAGTACCAGCAGCCATCGCACATCATTTACGCACA-----CC--CTCCCAGATCGTCG
519 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCG
* * * * * *
13490259 AAACCCCAATGCCG-C---C--G--AT-CGG-G-TTCTCCGACTATGGTGCCCCGGCGAAAAAAA
584 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * ** *
13490313 ATACTGCACCAGGACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGGTCTGATCTT
649 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * *
13490378 AGACTAGGAATGAAATTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
714 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
13490443 AAACAAGCGTACGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCTG-TCGGG
779 AAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GATCGGG
* * ** * *
13490507 TCCCCCTCTGCGTGCTACC-GATCCTGCTACCGCAACCCTTGGTCTGAT-CAGAT
843 TCCCCCTCTGCGTGCTGCCAGATCCTGCTGCCGCAACCCTCAGTCCGGTCCA-AT
* * * *
13490560 CTTAGA-TAGGGAATGAACTCCATAGGCTTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCGG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGG
* * ** * * *** * *
13490624 GCACTACGCCGGCCAGAGAGGCGAAATGTGCATGTTATGGATCGATAGCGTAGTAGGTGGGTTTA
61 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
13490689 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAGATTCATACAATGGTCC
126 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
13490754 CTTAAACCTTCACGAGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
191 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
13490819 CTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
256 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * **
13490884 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAAATCGAAGCATACAAGAT
321 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
13490949 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGGTAGCAAACCTG
386 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
13491014 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAA
451 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
13491078 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCCCCCTCGATC
516 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATC
* ** *
13491143 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGC-AGTGGTGCCCCG
580 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGA-TGGTGCCCCG
13491202 GTGAAGCTAA
Statistics
Matches: 5957, Mismatches: 749, Indels: 337
0.85 0.11 0.05
Matches are distributed among these distances:
865 19 0.00
867 3 0.00
868 9 0.00
869 464 0.08
870 13 0.00
872 10 0.00
873 4 0.00
874 242 0.04
875 4 0.00
876 22 0.00
877 164 0.03
878 26 0.00
879 5 0.00
880 144 0.02
881 280 0.05
882 294 0.05
883 512 0.09
884 86 0.01
885 89 0.01
886 5 0.00
887 248 0.04
888 31 0.01
889 4 0.00
891 40 0.01
892 372 0.06
893 5 0.00
894 2 0.00
895 7 0.00
896 260 0.04
897 552 0.09
898 12 0.00
899 18 0.00
900 1 0.00
901 40 0.01
902 9 0.00
903 260 0.04
904 561 0.09
905 11 0.00
906 136 0.02
907 507 0.09
908 75 0.01
910 106 0.02
911 240 0.04
912 65 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGA
ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
CCCTCTGCGTGCTGCCAGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAAT
Found at i:13489436 original size:14 final size:14
Alignment explanation
Indices: 13489417--13489444 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13489407 TCTCCGGCAA
13489417 TGCTCCGACGATGG
1 TGCTCCGACGATGG
13489431 TGCTCCGACGATGG
1 TGCTCCGACGATGG
13489445 CACCAGCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.36, T:0.21
Consensus pattern (14 bp):
TGCTCCGACGATGG
Found at i:13490413 original size:26 final size:26
Alignment explanation
Indices: 13490375--13490427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13490365 CCGGTCTGAT
*
13490375 CTTAGACTAGGAATGAAATTCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
* *
13490401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
13490427 C
1 C
13490428 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:13491570 original size:26 final size:26
Alignment explanation
Indices: 13491541--13491593 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13491531 CCGGTCCGAT
13491541 CTTAGAC-AGGGAAAGAACTCCGTATG
1 CTTAGACTA-GGAAAGAACTCCGTATG
*
13491567 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
13491593 C
1 C
13491594 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:13492899 original size:577 final size:576
Alignment explanation
Indices: 13491748--13492900 Score: 1756
Period size: 577 Copynumber: 2.0 Consensus size: 576
13491738 ATGAACTCCG
* * * * *
13491748 TATGCCTAAACCAACCGACGAAACGAGCAGGCGGGCGAGTGGGCGGCACTATGCCGGCCAGAGAG
1 TATGCCTAAACCAACCAACAAAACGAGCAGGCGGACGAGCGGGCGGCACTACGCCGGCCAGAGAG
* *
13491813 ACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTG
66 ACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
13491878 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
131 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
*
13491943 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAACCTTTTTGCGGTTCAGGATTT
196 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAACCTTTTTGCGGTTCAAGATTT
* * * ** *
13492008 TTAAAAATTTTTTCTGTAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCT
261 TTAAAAATTTTTTCGGAAGGAGTTCAGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCT
* * * *
13492073 GGCATGCACAAAACAATTCAGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAA
326 GGCATGAACAAAAAAATTCAGCCAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
13492138 GTGTCCCCATTTTTGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTTTTT
391 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* * *
13492203 AAGGGTGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
456 AAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGCCCAAGCACCAGC
* * *
13492268 ACCCATTGCACATATGTGCGCACACCCCCCCGGCCCCCCAGATTGCCGAAACCCCA
521 ACCCATCGCACATATGTGCGCACACCCCCCCGGCCCCCCAGATTGACAAAACCCCA
** * * *
13492324 TATGCCTATGCCAACCAACAAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGA
1 TATGCCTAAACCAACCAACAAAACGAGCAGGCGGACGAGCGGGC-GGCACTACGCCGGCCAGAGA
* *
13492389 GATGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
65 GACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
**
13492454 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
130 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
13492519 TTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTGTGGTTCAAGAT
195 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAACCTTTTTGCGGTTCAAGAT
* * *
13492583 TTTTTAAATTTTTTTCGGAAGGAGTTCAGGCCCCAAAGTTGGTAGACAG-GATCCTTGTATTTTT
259 TTTTAAAAATTTTTTCGGAAGGAGTTCAGGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTT
* * *
13492647 GTTGGCATGAACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
323 GCTGGCATGAACAAAAAAATTCAGCCAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAA
13492712 AAAGTGTCCCCATTTTAGACACTTTAATGGGC-ACTGGCAGCAAACCTATAAAATCTCAAATGCT
388 AAAGTGTCCCCATTTTAGACACTTTAAT-GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT
*
13492776 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGCAC
452 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGCCCAAGCAC
* * * * *
13492841 CAGTAGCCATCGCACATCATGTGCGCACA-TCCCCCGGCCCCCCCGATTGATAAAACCCCA
517 CAGCACCCATCGCACAT-ATGTGCGCACACCCCCCCGGCCCCCCAGATTGACAAAACCCCA
13492901 ACGCCGTCGG
Statistics
Matches: 519, Mismatches: 53, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
576 36 0.07
577 461 0.89
578 22 0.04
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (576 bp):
TATGCCTAAACCAACCAACAAAACGAGCAGGCGGACGAGCGGGCGGCACTACGCCGGCCAGAGAG
ACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAACCTTTTTGCGGTTCAAGATTT
TTAAAAATTTTTTCGGAAGGAGTTCAGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCT
GGCATGAACAAAAAAATTCAGCCAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGCCCAAGCACCAGC
ACCCATCGCACATATGTGCGCACACCCCCCCGGCCCCCCAGATTGACAAAACCCCA
Found at i:13494386 original size:904 final size:899
Alignment explanation
Indices: 13492324--13495549 Score: 4110
Period size: 895 Copynumber: 3.6 Consensus size: 899
13492314 CGAAACCCCA
* ** * * *
13492324 TATGCCTATGCCAACCAACAAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGA
1 TATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGC-GGCGGACGGGCACTACGTCGGCCAGAGA
* * * *
13492389 GATGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
65 GACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
13492454 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
130 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
13492519 TTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCAAGATT
195 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATT
** * * *
13492584 TTTT-AAATTTTTTTCGGAAGGAGTTCAGGCCCCAAAGTTGGTAGACAGGATCCTTGTATTTTTG
260 TTTTAAAATTTTTTT-GGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTG
* *
13492648 TTGGCATGAACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
324 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
13492713 AAGTGTCCCCATTTTAGACACTTTAATGGGC-ACTGGCAGCAAACCTATAAAATCTCAAATGCTC
389 AAGTGTCCCCATTTAAGACACTTTAAT-GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
13492777 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGCACC
453 TTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACC
* * * * * * *
13492842 AGTAGCCATCGCACATCATGTGCGCACATCCCCCGGCCCCCCCGATTGAT-AAAACCCCAACGCC
517 AGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCTCCGA-TCATCAGAACCCCAACGCC
* * * * ** *
13492906 GTCGGTCAGGTTCTCAGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGGCACCAAC
581 GTCGGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAG-AAAATGTGGCACCAGC
* * ** * * * *
13492971 ACATGCCCGAGCCCAGCATGTGTTGTCGTAATGCGCAGTCCGATCTGATCGTAGACTGGGAATGA
645 ACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
* * * *
13493036 ACTCCGTATGCTTGGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACT-AGCGTGC
710 ACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-TGAGCGTGT
* * * * * * *
13493100 AGGTGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTGGGTCTCGCTCTGTGT
774 GGGTGCTTAGCCGGCCAGAGGGG-GAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGT
* * *
13493165 GCTGTCGATCTTGCTGTCGCAACCCTCGATCTGAT-TCAATCTTAGACTGGGAATGAACTTCG
838 GCTGTCGATCCTGCTGCCGCAACCCTCGATCTGATCT-AATCTTAGACTGGGAATGAACTCCG
* *
13493227 TATGCCTAAGCCAACTGAC-AAA--A-CGAGCGGGC-G-GG-CGGGCACTACGCCGGCCAGA-AT
1 TATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGCGGACGGGCACTACGTCGGCCAGAGA-
** * *
13493284 GACGGGATACGCAAGCCATGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCT
65 GACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** *** *
13493349 GTGTGCCAATGATTTTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAG
130 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * *
13493414 TTTCATGGCAAGACGACTCATTTTCTATTTTTCAGGATTTTTTAAAATTTTTGCGGTTTG-GAAT
195 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAG-AT
*
13493478 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTTTATTTTTG
259 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTG
* * * *
13493543 TTGGCATGCGCAAAAACATTTAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAA
324 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
**
13493608 AACCGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
389 AAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
13493673 TTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAATACCAG
454 TTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
13493738 CACCCATCGCACATCATGTGCGCACACCCCCCGACCCCTCCGATCATCGGAACCCCAATGTCGCC
519 CACCCATCGCACATCATGTGCGCACACCCCCCGACCCCTCCGATCATCAGAACCCCAACGCCGTC
* ** * * * * *
13493803 GGTCAAGTTCTCCGGTAATATTCCGGCGATGGTGCCCCGATGAAGAAAATGTGACGCCAGCAGAT
584 GGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAATGTGGCACCAGCACAT
* * * * *
13493868 GCCCGAGCCTAGCATGTGCTAT-GCAACCCTTGGTCCGGTTTGATCTTAGATTGGGAATGAACTC
649 GCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * *
13493932 CTTAGGCTTACACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACGAAATGAGCCTATGGGTG
714 CTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTG
*** * * ** **
13493997 CTTAGCCGGCCAGAGGGGTGAGATGCGCAAGCCGGGGATCTACCAGGTCCCCCTTTACATGCTAC
779 CTTAGCCGGCCAGAGGGG-GAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGT
* ** * * *
13494062 CAATCCTGCTGCCGCAACCCTCGATCCAATCTGATCTTAGACTAGGAATGAACTCCA
843 CGATCCTGCTGCCGCAACCCTCGATCTGATCTAATCTTAGACTGGGAATGAACTCCG
* *
13494119 TAAGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCAGGCGGACGGGTGGGCACTACGTCGGCTA
1 TATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGC-GGCGGAC----GGGCACTACGTCGGCCA
* * * * *
13494184 GAGAGGCAGGACGTGCATGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
61 GAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
13494249 TTCTACCTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
126 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
13494314 GAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGA
191 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA
* * * *
13494379 GATTTTTTCAAATTTTTTTGGAAGGAGTTTTGGCCCCAACCTTGGTAGACGTGATCCTTGTATTT
256 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTT
*
13494444 TTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
321 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
13494509 AAAAAGTGTCCCCATTTCAA-ACACTTTAATGGCTACTGGCAGCAAACCTGT---A----AAAT-
386 AAAAAGTGTCCCCATTT-AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
13494565 CTC---AA--------A-TTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTA
450 CTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTA
* * ** *
13494618 CCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCCCCCTCC-ATCGCCAGAACCCTAAC
515 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GACCCCTCCGATCATCAGAACCCCAAC
* *
13494682 GCCGTCGGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCTG-GGAAAGGAAAATGTGGCAC
578 GCCGTCGGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACG-AA-GAAAATGTGGCAC
*
13494746 CAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
641 CAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
*
13494811 ATGAACT-CTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
706 ATGAACTCCT-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
* * * *
13494875 GTGTGGGGGCTCAGACGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
770 GTGTGGGTGCTTAGCCGGCCAGAGGGGGA-GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * * *
13494940 ATGTGGTGTCGATCCTACTACTGCAACCCTC-AGTCTGGTCCAATCTTAGACTGGGAATGAACTC
834 ATGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCTGATCTAATCTTAGACTGGGAATGAACTC
13495004 CG
898 CG
* *
13495006 TATGCCTAAGCCAACTGACGAAACGAGCGGGC--G-GGCGGACAGGCACTACGTCGGCCAAAGAG
1 TATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGCGGACGGGCACTACGTCGGCCAGAGAG
* * *
13495068 ACGGGATGTGCAAGCCGTGGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTTTG
66 ACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* * *
13495133 CATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGT
131 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * *
13495198 TTCATAGCACGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTATGCGGTTCGGGATTT
196 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTT
* *
13495263 TTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAAC-TGGTAGACATGATCCTTGTATTTTTTTT
261 TTTAAAATTTTTTTGGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
* ** *
13495327 GGTATGCA-AAAAAAATTCAGCTAAAGGCTCGAAGCGTACAAGA-TTTGTGACCATTTGAAAAAA
326 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * * *
13495390 GTGTCCCCATTTCACACACTTTAAAGGCTACTTGTAGCAAACCTGTAAAATCTCAAATGCTCTTT
391 GTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TT
13495455 TAGAGGGGTGTGAGTTCTCGAGGTTTGAT-A-GGAT-AGGGGCCAATATAAGGGCCAAGT---AG
455 TA-AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG
* * *
13495514 TACCCAT-TCACATCATGTGCGCACACCCCCCTACCC
519 CACCCATCGCACATCATGTGCGCACACCCCCCGACCC
13495550 GATCCGAACA
Statistics
Matches: 2007, Mismatches: 263, Indels: 120
0.84 0.11 0.05
Matches are distributed among these distances:
875 1 0.00
876 60 0.03
877 32 0.02
878 32 0.02
879 227 0.11
883 11 0.01
884 76 0.04
885 60 0.03
886 51 0.03
887 216 0.11
888 1 0.00
889 4 0.00
890 6 0.00
891 17 0.01
892 205 0.10
893 42 0.02
894 147 0.07
895 385 0.19
896 27 0.01
897 7 0.00
898 16 0.01
899 9 0.00
900 2 0.00
901 1 0.00
902 3 0.00
903 16 0.01
904 349 0.17
905 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (899 bp):
TATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGCGGACGGGCACTACGTCGGCCAGAGAG
ACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTT
TTTAAAATTTTTTTGGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCGACCCCTCCGATCATCAGAACCCCAACGCCGTCGG
TCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAATGTGGCACCAGCACATGC
CCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCT
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCT
TAGCCGGCCAGAGGGGGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGTCGA
TCCTGCTGCCGCAACCCTCGATCTGATCTAATCTTAGACTGGGAATGAACTCCG
Found at i:13494850 original size:26 final size:26
Alignment explanation
Indices: 13494799--13494851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13494789 CTGGTCTGAT
*
13494799 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13494825 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13494851 C
1 C
13494852 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13497981 original size:714 final size:713
Alignment explanation
Indices: 13496557--13502326 Score: 5690
Period size: 719 Copynumber: 8.0 Consensus size: 713
13496547 TCTTGACTTA
* * * * *
13496557 GGAATGAACTCCGTATGCCTAAAGCC-ATCGACGAAACGAGC-GG-GAGCAGGCGGGCACTACGT
1 GGAATGAACTCCGTATGCCT-AAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCACTACGT
* * * * *
13496619 C-GCCAAAAGAAATGGGAATGTGGCAAG-CGTGGATCGATAGAAGTGGGTAGGTCGGTTTAGGCA
65 CGGCC-AGAGAGATGGG-ATG-CGCAAGCCGTGGATCGATAG-GGT-GGTAGGTGGGTTTAGGCA
* * * *
13496682 CATCTTCATCTTTCTACGTTGCCAATGCCATTATTATGGCTTGTAAATTAATTACAATGGT-CCT
125 CATCTTCATATTTCTGCG-TGCCAATGCCATTTTTATGGCTTGTAAATTCA-TACAATGGTCCCT
* * **
13496746 TGAGCCTTCACAGTGCAGTTTCATGGCAAGATCGACTTGTTTTCTATTTTTCACGATTTTTGAAA
188 TAAGCCTTCAC-GTGAAGTTTCATGGCAAGA-CGACTCATTTTCTATTTTTCACGATTTTTGAAA
* * * *
13496811 CTTTCAATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-CCCAAACTTGGTAGAC
251 CTTT-TATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
13496875 ATGATCCTTGTATTTTTTTTGGCTTGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGAT
315 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * * ** *
13496940 TTTGTGACCATTTGAAAAAACTAT-CCCGTTTCAGACACTTTAATGGTTGTTGACAGCAAACCTG
380 TTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
13497004 TAAAATCTCAAACGCTCTTTAAGGTGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
445 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
13497069 AATAAGGGCCAAGTACTAGCACCCAGCGCACATAATGTGCGCACA-CCCCCCGGCCCCCTCGATC
510 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATC
* * * * * ** *
13497133 GTCAGAACCCCAATGTCGCTGGCCAGGTTCTCCGACGATGCTACAACGATGGTGCCCCGGCAAAG
574 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAG
* * *
13497198 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCTG
639 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-G
13497262 ATCTTAGACTG
703 ATCTTAGACTG
* *
13497273 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGTGAACTACGTC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCACTACGTC
* * * * * **
13497338 GGCTAAAGAGATAGTATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTT
66 GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
** * *
13497403 TGTACTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
131 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
13497468 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTGTTATGG
196 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTT-TTATGG
* * *
13497533 TTCGAGATTTTTTAAAATTTTTTCGGAATGATTTTTGGCCCCAAACTTGGTAGGCGTGATCCTTG
260 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * * * **
13497598 TATTTTTGTTGGCTTGGACAAAACATTTCAGCTAAAAAATCCAAGTGTACAAGATTTTGTGACTT
325 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
13497663 TTTAAAAAAACTATCCCCGTTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCA
390 TTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
13497728 AACGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCT
455 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
13497793 GAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCC
520 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCC
* ** * * *
13497858 AATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGGCCCGGCAAAGAAAAATACGGC
585 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGC
* * * * * *
13497923 ACCAGCTCATGCTTGAGCCCGGCATGTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAAACTG
650 ACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTG
* * *
13497987 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCACTACGTC
* * *
13498052 GGCCAGAGAGATGGGATGCACAAGCCGTGGATCCATAGGGTGGTAGGTAGGTTTAGGCACATCTT
66 GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *** * *
13498117 CAAATTTCTTTATGCCAATG-CATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAGGCCTT
131 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
13498181 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT-TCGG
196 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTAT-GG
* *
13498245 TTCGAGATTTTTAAAAATTTTTTCGGAAGGAG-TTTAG-CCCAAACTTGGTAGAAACGTGATCCT
260 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG--ACGTGATCCT
* * *
13498308 TGTA-TTTTGTTGGCATGCACAAGAAAATTTACCTAAAAACTCG-AGTGTACAAGATTTTGGTGA
323 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-GTGA
* * * * *
13498371 TCATTTGAAATAAAGTGTCCCGATTTTAGACACTTAAATGGCTACTGGCAGCAAAACCTGTAAAA
387 CCATTT-AAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAA
*
13498436 TCCTCAAATTGCTCTTTAAGGGGGTGTGAGTTCT-GAGGCTTGAATGAGGGATAGGGGGCCAATA
450 T-CTCAAA-TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-ATGAGGGATAGGGGGCCAATA
* * * * * **
13498500 TAAGGGCCAAGGACTAGCACCCATCACACATCATGTGCGCACA-CCCCCCTGCCCCCTGATCACC
512 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
* * * * *
13498564 GAAAACCCAATGCCGCTGGTTAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
577 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAA
* * * * * * *
13498629 AATGCAGCACCAGCACATGCCCGAGCCTAACATGTGCTACCGCAACCCTCAGT-CTGTTCGATCT
642 AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCT
13498693 TAGACTG
707 TAGACTG
* * * ** * * ** *
13498700 AGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCGATGAAATGA
1 GGAATGAACTCCGTATGCCTA-A----G--CCAAC--CG-ATG---AA-ACAAGCG--G--GCGG
* * * * ** * * * * * * **
13498765 GCGTGTGGGCACT-CAGCCGGCCAGAGGGGCGGGAAGCACAAGTCGAGGATCGGTCGGGTTCCCC
48 GCGGGCGGGCACTAC-GTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGG-T--GG
* * * * * *** * * *
13498829 TCTGTGTGCTGTCGATCCTACTGCCACAACCCTCGGCTTGGTCTGATCTTAGACTAGGAATG-AA
109 T-AG-GTG--G--G-T-TTA--GGCAC-ATCTTCATATT--TCTG--CGT-G-C---CAATGCCA
** * * * ** * * ** * * *
13498893 CTTCGTATGCCTAAGCCAACCGA-AGAAACGAGA-GGGCGGGCGGACGGGCAGGCAGGTGGGCCG
154 -TTTTTATGGCT-TG-TAA---ATTCATAC-A-ATGGTC---C---C--TTAAGC--CT---TC-
* * * * * ** *** * **** * ** *** **
13498956 ACGGGCA-CTACGTCGGCCAGAGA-GACGGGATGCGCAAGCCGT--GGATTGAT-AGGGTGGTAG
197 ACGTGAAGTTTCAT-GG-CA-AGACGAC-TCATTTTCTATTTTTCACGATTTTTGAAACTTTTA-
* * * * * * * * * *
13499016 GTGGGTT-TAGGCATATCTTCATA-TTTCTCATGCCAATGCCATTTTTGTG------GCTT-GTA
257 -T-GGTTCGA-G-ATTTTTTAAAATTTTTTC--G-GAA-G-GAGTTTTG-GCCCCAAACTTGGTA
* * ** * *** ** * * *** ** * * *
13499072 AAC-TCATACAATG-GTCCCT-TAAGCCTTCACGTGAAGTTTCATGGC-AAGATGATTC--A-TT
312 GACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA--GCTAA-A-AACTCGAAGTG
* * * * * * * *
13499130 TTCTA-TTTTTGTGACCATTT-GAAAAACTTTCCCCATTTCAGAAACTTTAATGGCTACTAGCAG
372 TACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
13499193 CAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTAATGAGGGATAG
437 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
13499258 GGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCC
502 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* *
13499323 CCCGATCATCGGAACCCCAATGCCGCCAGTCAGG---T-------T-CTCCGGCGATGGTGCCCC
567 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* ** **
13499377 AGCGAAGAAAAATGTAGCACCAGCACATG-CTGGAGCCCAGCATGTGCTGCCATAACCCTCGGTC
632 GGCGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
13499441 CAGTTCG-TACTTAGACTG
696 CGGTTCGAT-CTTAGACTG
* * * * *
13499459 GGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACTAGTGGGCGGGCAGGCGGGCAGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC-A---AGCGGGCGGGCGGGCGGGCACTA
* * * *
13499524 CGTCGGCCAGAGATATGGGATGCACAAGCCGTGGATTGATAGGGTGATAGGTGGGTTTAGGCACA
62 CGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
13499589 TCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAG
127 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
13499654 CCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTACACGATTTTCGAAACTTTTT
192 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTT
* * * * *
13499719 ACGATTCCAGATTTTTTAAAATTTTTTTGG-AGGACGTTTTGGCCCCAAACTTGGTAGA-ATGAT
256 ATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGAT
*
13499782 CCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
320 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
13499847 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
385 GACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* **
13499912 TCTCAATTGCAT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGCACCAATATA
450 TCTCAAATGC-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
13499976 AGGGCCAAGTACCAGTACCCATCGCACATCATGTGCACACACCCTCCCGGCCCCCCCGATCGCCG
514 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCG
* * * * *
13500041 GAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCTGCGATGGTGGCCCAGCGAAGAAAA
578 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAA
** * ** * *
13500106 ATGCGGCACCAGCACATGCCTGAGCAAAGCATGTGCTTCCGCAACCCTCGGTTTGGTCCGACCGT
643 ATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATC-T
13500171 T-GACTG
707 TAGACTG
* * *
13500177 GGAATGAACTCCGAATGCCTAAGCCAACCGATGAAACAAGTGGGCGGACGGGCGAGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAA----GCGGGCGGGCGGGCGGGCACTA
* * *
13500242 CGTCGACCAGAGAGATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACA
62 CGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
13500307 TCTTCATATTTTTGCGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
127 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
13500372 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT-
192 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTA
* * * * *
13500436 TGCAGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGCCCCCAAACTTGGTAGATGTGT
257 TG--GTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
13500500 TCCTTGTATTTTTTTTGGCATGCACAAAAGAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTT
319 TCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
13500564 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
383 GTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* **
13500629 AATCTCAAATGCAT-TTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGCACCAATA
448 AATCTCAAATGC-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
13500693 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCTCACCCTCCCGGCCCCCCCGATCGT
512 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGT
* * * * * **
13500758 CGAAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCTGTGATGGTGGCCTAGCGAAGAA
576 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAA
* ** * *
13500823 AAATACGGCACCAGCACATGCCTGAGCAAAGCATGTGCTTCCGCAACCCTCGGTCCGGTCCGATC
641 AAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATC
13500888 GTT-GACTG
706 -TTAGACTG
*
13500896 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGAGCGGGCGGGCGGGCAGGCAGTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCA--C--TA
* * *
13500961 CGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACA
62 CGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
13501026 TCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACG
127 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
13501091 CCTTCACGTGAAGTTTCATGGGAAGACGACTCATTTTATATTTTTCACAATTTTTGAAACTTTTT
192 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTT
** * * *
13501156 ACAGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAGATGTGAT
256 ATGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
13501220 CCTTGTATTTTTGTTGGCATGCACAAAAGAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTG
320 CCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
13501284 TGACCATTTGAAAAAAA-TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACATGTAA
384 TGACCATTT-AAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
13501348 AATCTCAAATGCAT-TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATA
448 AATCTCAAATGC-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
13501412 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCTCCCCCCCGGCCTCCCGATC
512 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCCGGCCCCCCGATC
* * * *
13501477 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACAATGCTCTGGCGATGGTGCCCTGGCGAAG
574 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAG
* * * * * * *
13501542 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCTTGTGCTGTCACAACCCTCAGTCCGGTCCGA
639 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGA
13501607 TCTTAGACTG
704 TCTTAGACTG
* * * * *
13501617 GGAATGAACTCCATATGCCAAAGCCAATCGATGAAACGAGCAGACGGGCGGGCGGGCAGGCACTG
1 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC-A--AG-CGGGCGGGCGGGCGGGCACTA
* * * * *
13501682 CGTCGGTCAGAGAGA-CGGATGGGCAGGCCATGGATCCG-TAGGGTGGTAGGTGGGTTTAGGCAC
62 CGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGAT-CGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * * *
13501745 ATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATCGTCCCTCAC
126 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
13501810 GCCTTCACGTGAAGTTTCATGGCAAG--TAC-CA---T-GA-----AAC--TTTTTG--------
191 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * *
13501853 A-GGTTCAAGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAAACATGATC
256 ATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
** * * *
13501917 CTTGTATTTTTGTCAGCATGCACAAAAAAAATCAGCTAAAAACACGAAGTGTACAAGATTTTGCG
321 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
13501982 ACTATTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACTGGCAGCAAACCTGTAAAAT
386 ACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
13502047 CTCAAATACTGTTTACGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
451 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
13502112 GGCCAAGTACCAGCACCTATCACACATCATGTGTGCACACCCCCTC-GCCCCCCGATTGTCGGAA
516 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAA
** * ** *
13502176 CCATAATGCCGTCGGTCAGGTTCTCTAACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATG
581 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATG
* * * *
13502241 CGACACTAGCACATGCCTGAGCCCAACATGTGCTGTCGCAACCCTCGGTCCGG-TCTGATCTTAG
646 CGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-GATCTTAG
*
13502305 ATTG
710 ACTG
*
13502309 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
13502327 TTAGACTGGG
Statistics
Matches: 4228, Mismatches: 635, Indels: 406
0.80 0.12 0.08
Matches are distributed among these distances:
691 1 0.00
692 147 0.03
693 6 0.00
695 10 0.00
696 258 0.06
697 8 0.00
698 1 0.00
700 1 0.00
701 16 0.00
702 22 0.01
703 23 0.01
704 21 0.00
705 17 0.00
706 158 0.04
707 35 0.01
708 2 0.00
709 3 0.00
710 30 0.01
711 43 0.01
712 156 0.04
713 267 0.06
714 562 0.13
715 146 0.03
716 41 0.01
717 32 0.01
718 383 0.09
719 875 0.21
720 146 0.03
721 177 0.04
722 23 0.01
723 4 0.00
724 2 0.00
725 17 0.00
726 3 0.00
727 6 0.00
729 5 0.00
730 1 0.00
731 52 0.01
732 5 0.00
734 3 0.00
735 2 0.00
736 3 0.00
738 2 0.00
740 4 0.00
741 2 0.00
742 3 0.00
744 5 0.00
745 49 0.01
746 4 0.00
747 4 0.00
749 5 0.00
750 3 0.00
751 1 0.00
752 3 0.00
754 6 0.00
755 8 0.00
756 1 0.00
757 3 0.00
758 71 0.02
759 36 0.01
760 5 0.00
761 1 0.00
766 2 0.00
768 88 0.02
769 48 0.01
770 14 0.00
771 35 0.01
773 16 0.00
774 32 0.01
775 18 0.00
776 22 0.01
777 12 0.00
778 4 0.00
779 2 0.00
780 1 0.00
781 1 0.00
782 3 0.00
783 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (713 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCACTACGTC
GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTATGGT
TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
CCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTG
Found at i:13498721 original size:26 final size:26
Alignment explanation
Indices: 13498691--13498743 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13498681 TCTGTTCGAT
13498691 CTTAGACTGAGAATGAAC-TCTGTATG
1 CTTAGACTGAGAATGAACTTC-GTATG
*
13498717 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
13498743 C
1 C
13498744 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:13502336 original size:26 final size:26
Alignment explanation
Indices: 13502300--13502352 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13502290 CCGGTCTGAT
*
13502300 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13502326 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13502352 C
1 C
13502353 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13504314 original size:718 final size:705
Alignment explanation
Indices: 13502463--13504669 Score: 2737
Period size: 718 Copynumber: 3.1 Consensus size: 705
13502453 TCTTCCTGCT
* * *
13502463 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCCAAGCCAACCGACGA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
13502528 AACGAGCAGGCGGGTGGGCACTACG-TCAGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATA
66 AACGAGCAGGCGGGCGGGCACTACGCT-AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
13502592 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGCTTGT
130 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
13502657 AAATTCATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
195 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
13502721 TTTTCACGATTTTCAAAACTTTTTGTCGTACGGGATTTTTTAAAATTTTTTCAAAAGCAGTTTTG
260 TTTTCACGATTTTCAAAACTTTTT-TCGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
*
13502786 GCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAA
324 GCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
*
13502851 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGG
389 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
13502916 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAGCGGGTGTGACTTCTCGAGGTTTGA
454 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * *
13502980 TGAGGGATAGCTGGCCCAATATAAGGGTCGAAGTACTAGCACCCATC-AACATCA-TGTGCGA-A
519 TGAGGGATAG-GGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCGCACATCAGTGTGC-ACA
* * * * * *
13503042 CACCCTGG-CCCCCTATCCT-GGAACCCCAATGCCACCCGTGG-TCAGTTCCTCCGGTGATG---
581 CCCCCTGGCCCCCCAATCATCGGAACCCCAATG-C-CGC-TGGTTAAGTT-CTCCGGCGATGCTC
** *** * *
13503101 T-GC-CCGGTG--AAAGT-AA-AAAAATGTGGCACCA-CGACATCCCGAGCCCAGCATGTGCTGC
642 TGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGC-ACATCCTGAGCCCAGCATGTGCTCC
* *
13503159 GAAAACCCTC-GTCCTGGGCTGATCTT-GAC-GGGAAATGAACTCCGTATGCCTAAGCCAACCGA
1 G-CAACCCTCGGTCC-GGTCTGATCTTAGACTGGG-AATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
13503221 TG-AACGAGCAGTGCTGGCGGG-ACTAACGCCAGCCAGAGAGACGGGTATGTGCAAGCCGTGGAT
63 CGAAACGAGCAG-GCGGGCGGGCACT-ACGCTAGCCAGAGAGACGGG-ATGCGCAAGCCGTGGAT
* *
13503284 CCGATAGGGTGGTTAGGTGGGTTGAGAGGCAACATCTTCATATTTCTGCCTGCCAATGCCATTTT
125 -CGATAGGGTGG-TAGGTGGGTT--TAGGC-ACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
13503349 TATGGCTTGTAAATTCAGTACAATGGT-CC-TGAGCCTTCATGTGAAGTTTCATGGC-AGGCTGA
185 TATGGCTTGTAAATTCA-TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-GA
* * * *
13503411 GTCGTTTTTCTATTTTTCACATAACGCGAATTTTCCAAACTTTTTTATGTTCGATA-TTTTTAAA
248 CTCG-TTTTCTATTTTT--C---A--CG-ATTTTCAAAACTTTTTT-CGTTCGAGATTTTTTAAA
* * **** *
13503475 ATTTTTGCGGGAAGGAGTTTTAATGCCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCAT
303 ATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCAT
* * *
13503540 GCACAAAAATATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
367 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
13503605 CCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAAAGCTCTTTAAGGG
432 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
13503670 GGTGTGAGTTCTGGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCA
497 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
13503735 TCGCACAGCAGGTGTGCACACCCCCCGGCACCCCCAATCGTCGAAACCTCAATGCCGCTGGTTAA
562 TCGCACATCA-GTGTGCACACCCCCTGGC-CCCCCAATCATCGGAACCCCAATGCCGCTGGTTAA
*
13503800 GTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGGACCAGCACATACCTG
625 GTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACAT-CCTG
*
13503865 AGCCCAGCTTGTGCTACC
689 AGCCCAGCATGTGCT-CC
** * ** *
13503883 GCAACCCTCGGTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTATTTCTAAGCCAATCGACGA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
*
13503948 AACGAGCGGACGGGCGAGCGGGCGGGCACTACGCTAGGCAGAGAGACGGGATGCGCAAGCCGTGG
66 AACGAGC--A-----G-GCGGGCGGGCACTACGCTAGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
13504013 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
123 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
13504078 GGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
188 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
13504143 TTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTAAACTTTTTTCTGAAGG
253 TTTCTATTTTTCACGATTTTCAAAACTTTTTTC-GTTCGAGATTTTTTAAAATTTTTTCAGAAGG
* *
13504208 AATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
317 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
*
13504273 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACT
382 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * * *
13504338 TTAACGGCTACTGGTAGCAAACTTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTGTTGA
447 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
13504403 GGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
512 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-GTGT
* * * * * *
13504468 GCACATCCCCTGGCCCGCCCGATCACCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGC
576 GCACACCCCCTGGCCC-CCCAATCATCGGAACCCCAATGCCGCTGGTTAAGTTCTCCGGCGATGC
* * ** * * *
13504533 TCCGACGATGGTGCCCCGACGAAG-AAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCT
640 TCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATCCT-GAGCCCAGCATGTGCT
13504597 GCC
704 -CC
** * * * * *
13504600 ATAACCGTCGGTGCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACC-AGCG
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CG
13504664 AAACGA
65 AAACGA
13504670 ACGTGCGGGC
Statistics
Matches: 1292, Mismatches: 152, Indels: 113
0.83 0.10 0.07
Matches are distributed among these distances:
695 15 0.01
696 60 0.05
697 33 0.03
698 11 0.01
699 10 0.01
701 12 0.01
702 74 0.06
703 21 0.02
705 1 0.00
708 1 0.00
710 34 0.03
711 201 0.16
712 37 0.03
713 25 0.02
714 7 0.01
715 10 0.01
716 14 0.01
717 94 0.07
718 339 0.26
719 16 0.01
720 2 0.00
721 3 0.00
722 18 0.01
723 35 0.03
724 34 0.03
725 19 0.01
726 62 0.05
727 34 0.03
728 3 0.00
729 10 0.01
730 11 0.01
731 16 0.01
732 27 0.02
733 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (705 bp):
GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCAGGCGGGCGGGCACTACGCTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTCAAAACTTTTTTCGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
CCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAGTGTGCACACCCCC
TGGCCCCCCAATCATCGGAACCCCAATGCCGCTGGTTAAGTTCTCCGGCGATGCTCTGGCGATGG
TGCCCCGGTGAAGAAAAATGTGGCACCAGCACATCCTGAGCCCAGCATGTGCTCC
Found at i:13505518 original size:26 final size:26
Alignment explanation
Indices: 13505489--13505539 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13505479 GGTCCGATCA
* *
13505489 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGCAATGAACTCCGTATGCT
*
13505515 TAGATTGGCAATGAACTCCGTATGC
1 TAGACTGGCAATGAACTCCGTATGC
13505540 CTAAATCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCGTATGCT
Found at i:13506897 original size:901 final size:898
Alignment explanation
Indices: 13503881--13508195 Score: 5748
Period size: 887 Copynumber: 4.8 Consensus size: 898
13503871 GCTTGTGCTA
* * * * ** *
13503881 CCGCAACCCTCGGTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTATTTCTAAGCCAATCGAC
1 CCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
13503946 GAAACGAGCGGACGGGCGAGCGGGCGGGCACTACGCTAGG-CAGAGAGACGGGATGCGCAAGCCG
66 GAAACGA---G-CGGGCGGGC-GGCGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAAGCCG
13504010 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
125 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
13504075 TATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
190 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * *
13504140 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTAAACTTTTTTCT-G
255 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-TAG
* *
13504204 AAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
319 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAA
*
13504269 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGA
383 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * * *
13504334 CACTTTAACGGCTACTGGTAGCAAACTTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTG
448 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
13504399 TTGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATCGCACATCAT
513 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
13504464 GTGCGCACATCCCCTGGCCCGCCCGATCACCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACG
578 GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* *
13504529 ATGCTCCGACGATGGTGCCCCGACGAAG-AAAATG-CGACACCAGCACATGCTCGAGCCCAGCAT
643 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCCG-CACCAGCACATGCCCGAGCCCAGCAT
**
13504592 GTGCTGCCATAA--C-C-GT-CGG--------T-G-C---G---G---TCCG-AT-CTTAGACTG
707 GTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
13504631 GGAATGAACTCCGTATGCCCAAGTCAA-CCAGCGAAACGAACGTGCGGGCGCTCAGCCGGCCAGA
772 GGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * *
13504695 GGGGCGAGATGCGTAAGCCGAGGATCG-GTCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTA-
836 GGGGCGGGATGCGCAAGCAGAGGATCGAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC-AG
* * * * *
13504757 CTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGAC
1 CCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * **
13504822 GAAACGAGCGGGCGGACGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCATAAGCCGTGGAT
66 GAAACGAGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
13504887 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTCTACGTGCCAATGCTATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* * *
13504952 -TTGTGAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
13505016 TCTATTTTTCACGATTTTTGAAACTTTTTGCTGTCCAAGATTTTTTAAAATTTTTTCAGAAGGAG
260 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAG
* * * *
13505081 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTTTGGCACGCGCAAAAAAATTCAG
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGC-AAAAAAAATTCAG
*
13505146 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTT
388 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
13505211 TAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGGGTTCTCGAG
453 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
13505276 GTTTGTTGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
518 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** * * *
13505341 CACA--------CCCCCCCGATCGCCAGAACCTTAATGTCGCTGGTCAGGTTCTCTGACGATGCT
583 CACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * * * * *
13505398 CCGGTGATTGTGGCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGAGCTG
648 CCGGCGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * * * *
13505463 TCGCGACCCTCGGTCTGGTCCGATCATAGACTGGGAATGAACTCTGTATGCTTAGATTGGCAATG
713 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
13505528 AACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGG
778 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * *
13505593 GATGCGCAAGCCA-AGGATC-AGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG
843 GATGCGCAAG-CAGAGGATCGAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAG
* * * * *
13505648 CCACAACCCTCGGTCTGG-CTTGATCTTACACTGGGAATGAACTCCGTATGCTTAAGCCAACCGA
1 CCGCAACCCTCAGTCTGGTC-TAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
13505712 CGAAACGAGCGGGC--G-GGCGGGCACTACGCCGGCCAGATAGACGGGATGCGTAAGCCGTGGAT
65 CGAAACGAGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
13505774 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
*
13505839 CTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
13505904 TCTATTTTTCACAATTTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG
260 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAG
** *
13505969 TTTTGGAGCCAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAGAAAATTCAGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAA-AAAATTCAGC
* *
13506034 TAAACACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
13506099 AATAGCTACTGGAAGCAAACCTGTAAAATCTCAAATGATTTTTAAGGGGGTGTGAGTTCTCGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
13506164 CTTGATGGGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * *
13506229 ACACCCCCCCTGGCCCCCCCGATCACCGGATCCCTAATGCGGTCGGTCAGGTTCTCCGGCGATGC
584 ACA-CCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
*
13506294 TCCGGCGATGGTGCCCCAGA-GAAGAAAAATGCCGCACCAGCACATGCCCGAGCCTAGCATGTGC
647 TCCGGCGATGGTGCCCC-GACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
13506358 TGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATTCTTAGACTGGGAA
711 TGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * **
13506423 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGTT
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * ** *
13506488 GGGATGTGCAAGCAGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTATCGATCCTGCAG
841 GGGATGCGCAAGCAGAGGATCGAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAG
* * * * *
13506545 CTGCAACCCTCACTCTGGTCCAATTTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
13506610 GAAACGAGCGGGCGGGCAGGCGGGCACT-CTGTCGACCA-AGGAGACGGGATGTGCAAGCCGTGG
66 GAAACGAGCGGGCGGGC-GGCGGGCACTAC-GCCGGCCAGA-GAGACGGGATGCGCAAGCCGTGG
* *
13506673 ATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTACATGCCAATGCCATTTATAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * *
13506738 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGATTCATGGCAAGACAACTCGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
13506803 TTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAAATTTTTTAAAATTTTTTTAGAAGG
258 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTAGAAGG
*** * * *
13506868 AGTTCTT-GCTTGAAACCTAGTAGACGTGATCCTTGTATCTTTGTTGGCATGTACAAAAAAAA-T
323 AGTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG--CAAAAAAAATT
* * * * *
13506931 CAGCTGAAAACTCGGAGTGAACAAGATTTTGTGACCATTTGAAAAAGGTCTCCCCATTTCAGACA
385 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
13506996 CTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGACTTCTC
450 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
13507060 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
515 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
*
13507125 GCGCACACCCCCCGGCCCCCCCGTTCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
580 GCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* ** *
13507190 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTA
645 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * * *
13507255 CTGCCGCAATGCTCGGTCCAGTCCTATCTTAGATTGGGAATGAACTCCGTATGCTTAGAGTGGGA
710 CTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** * * *
13507320 ATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGG
775 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * *
13507385 CGGGATGCGCAATCCGGGGAT-AAGCCGGGTCCCCCTCTGCGTGCTGTCGGTCCTACTG
840 CGGGATGCGCAAGCAGAGGATCGAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAG
* * * * * *
13507443 CCGTAACCCTC-GATCTGGTCGAATCTTAGACTGGGAATGAACTCCTTATGCCCAAGCTAACTGA
1 CCGCAACCCTCAG-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
13507507 CGAAAAGAGCGGGC--G-GGCGGGCGCTACGCCGGCCAGAGAGACAGGATGCACAAGCCGTGGAT
65 CGAAACGAGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *** * *
13507569 CGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTACCAATGCCATTTTTATGC
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
*
13507634 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
13507699 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAACTTTTTTTGGAAGGAT
260 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAG
* *
13507764 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAAATCAGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGC
* * *
13507829 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
13507894 AATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
13507959 TTTGATGAGGGATAGGGGGCCAAAATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
13508024 ACACCCCACCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGG-T-T----C--T-
584 ACA--CC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * * *
13508080 CT--GGCGATGGTGCCCCGATGAAGAAAATTACAGCACCAGCACATGACCGAGCCCAGCATGTGC
646 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATGTGC
**
13508143 TGCCGCAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGC
711 TGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
13508196 CTAAGCCAAT
Statistics
Matches: 3023, Mismatches: 342, Indels: 137
0.86 0.10 0.04
Matches are distributed among these distances:
864 62 0.02
865 38 0.01
866 1 0.00
867 1 0.00
868 1 0.00
869 2 0.00
870 2 0.00
871 151 0.05
872 320 0.11
873 1 0.00
876 64 0.02
878 1 0.00
879 1 0.00
880 1 0.00
883 1 0.00
886 4 0.00
887 410 0.14
888 149 0.05
889 5 0.00
890 4 0.00
891 182 0.06
892 7 0.00
893 9 0.00
894 322 0.11
895 118 0.04
896 4 0.00
897 326 0.11
898 373 0.12
899 7 0.00
900 115 0.04
901 330 0.11
902 6 0.00
903 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (898 bp):
CCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACGAGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
GCGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCAGAGGATCGAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAG
Found at i:13507318 original size:26 final size:26
Alignment explanation
Indices: 13507282--13507334 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13507272 CCAGTCCTAT
*
13507282 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
13507308 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
13507334 C
1 C
13507335 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAGTGGGAATGAACTCCGTATG
Found at i:13509783 original size:26 final size:26
Alignment explanation
Indices: 13509754--13509803 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13509744 ATCCGATCTG
13509754 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
13509780 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
13509804 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:13510625 original size:904 final size:896
Alignment explanation
Indices: 13508171--13510681 Score: 3219
Period size: 904 Copynumber: 2.8 Consensus size: 896
13508161 AATCCAATCT
* * * *
13508171 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGC----GGGCGGGCGGGCT
1 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGAGGGCGGGCGGGCA
* * * * * * * *
13508232 CTACGTCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGC
66 CTAAGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGC
* * * * *
13508297 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGTTTTTAAATTTATACAATGGTCCCTT
131 ACATCTTCATATTTCTACATGCCAATGCCATTTTT-TGGCTTGTAAATTCATACAATGGTCCCTT
* * * * * **
13508362 AAGCCTTCACGTGAAGTTTCATGGCATGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTT
195 AAGCCTTCACGTGAAGTTTCATTGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * * * * * ** * *
13508427 TTT-CTGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTGGATGT
260 TTTAC-GGTTCAGCATTTTATAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTTTTAGACGT
* *
13508491 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAACTCGAAGTGTACAAGATTT
324 GATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * * * *
13508556 TGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
389 CGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACAGGCAGCAAACCTGTA
* * * *
13508621 AAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGG-CAATA
* * * * *
13508686 TAAGGGCCAAGTACC-GCCACCCATAGCACATCATGTCTGCACACACCCTCTGGCCCCCCCGATC
518 TAAGGGCCAAATACCAG-CACCCATCGCACATCA--TCTGCACACACCCCCCGGCCCCCACGATC
* * * * * * * * **
13508750 ACTGGAACCCCAATACCGTCAGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGGTGAAG
580 ACCGAAACCACAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * ** **
13508815 AAAAATACGGCACCAGCAGATGCCC-GAGCCCAACATGTGCTGTCATAA-CC-C--TC-G----G
645 AAAAATGCAGCA-CAGCACAT-CCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCG
13508870 -TC-----C-------G-A-TCC-TAT-CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC
708 ATCTGAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
13508918 TAACGAAATGAGCGTGCGGGCGCTTAGCTGGCCAAAGGGGCAGGATGAGCAAGCCGAGGATCGGT
773 CAACGAAATGAGCGTGCGAGCACTCAGCTGGCCAAAGGGGCAGGATGAGCAAGCCGAGGATCGGT
* * * * * * *
13508983 CTGGTCCCCCTTTACGTGCTACCAATCCTGCTACTGCAACCCTCGGTCTGGTTCGATCC
838 CGGGTCCCCCTCTACGTGCTACCAATCCTGCTACCGCAACCCTAGATCCGATTCGATCC
* * *
13509042 TAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGAGGGCGGGCGGGTA
1 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGAGGGCGGGCGGGCA
* * * *
13509107 CTATGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGC
66 CTAAGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGC
*
13509172 ACATCTTCATATTTCTACATGCCAATGCCATTTTTTGGCTTGTAAATTCATGCAATGGTCCCTTA
131 ACATCTTCATATTTCTACATGCCAATGCCATTTTTTGGCTTGTAAATTCATACAATGGTCCCTTA
* *
13509237 AGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTT
196 AGCCTTCACGTGAAGTTTCATTGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* * *
13509302 TTACGGTTCAGCATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTTTTCGACGTGA
261 TTACGGTTCAGCATTTTATAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTTTTAGACGTGA
* * *
13509367 TCGTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
326 TCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTCG
*
13509432 TGACCATTTGAAAAAAGTGTCTCCATTTCAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAA
13509497 ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGGCAATATAA
456 ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGGCAATATAA
* * * *
13509562 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGAA
521 GGGCCAAATACCAGCACCCATCGCACATCATCTGCACACACCCCCCGGCCCCCACGATCACCGAA
*
13509627 ACCACAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
586 ACCACAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * *
13509692 GCGGCACAGCACATGCCTGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGATCCGATCTGAGA
651 GCAGCACAGCACATCCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTGAGA
* *
13509757 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
716 CTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAA
* * * *
13509822 TGAGCGTGCGAGCACTCAG-TCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
781 TGAGCGTGCGAGCACTCAGCT-GGCCAAAGGGGCAGGATGAGCAAGCCGAGGATCGGTCGGGTCC
** ** * * * *
13509886 CCCTCTGTGTGCTGTCGATCCTGCTTCCGCAACCTTAGATCCGA-TCTGATCT
845 CCCTCTACGTGCTACCAATCCTGCTACCGCAACCCTAGATCCGATTC-GATCC
13509938 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGAGGGCG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGA----GAGGGCG
* * *
13510003 GGCGGGCCCTAAGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
58 GGCGGGCACTAAGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGG
* * *
13510068 GTTTAGGCACATCTTCATATTTTTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAAT
123 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT-TGGCTTGTAAATTCATACAAT
* * *
13510133 GGTCCCTTAAGCCTTCACGTGAATTTTCA-TGACAAGACAACTGGTTTTCTATTTTTCATGATTT
187 GGTCCCTTAAGCCTTCACGTGAAGTTTCATTG-CAAGACAACTCGTTTTCTATTTTTCACGATTT
* * *
13510197 TCGAAACTTTTTACGGTTCAGGA-TTTATAGAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTT
251 TCAAAACTTTTTACGGTTCAGCATTTTATAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTT
* *
13510261 TTAGTCGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAATATTCAGCTAAAAACTCGAAGTGTA
316 TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTA
* *
13510326 CAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
381 CAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACAGGCAGCA
* ** *
13510391 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
446 AACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGG
* **
13510456 GGCCAATATAAGGG-TAAATACCAGCACCCATCGCACATCATCTGTGCACACCCCCCGGCCCCCA
511 GG-CAATATAAGGGCCAAATACCAGCACCCATCGCACATCATCTGCACACACCCCCCGGCCCCCA
* * *
13510520 CGATCACCGGAACC-CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA
575 CGATCACCGAAACCACAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGA
* *
13510584 CGAAGAAAAATGCAGCACTAGCACATCCCTGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGG
640 CGAAGAAAAATGCAGCAC-AGCACATCCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGA
*
13510649 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
704 TCCGATCTGAGACTGGGAATGAACTCCGTATGC
13510682 CTAAGCCAAC
Statistics
Matches: 1448, Mismatches: 145, Indels: 61
0.88 0.09 0.04
Matches are distributed among these distances:
869 2 0.00
870 26 0.02
871 139 0.10
872 1 0.00
873 35 0.02
874 317 0.22
875 104 0.07
879 1 0.00
880 2 0.00
885 1 0.00
892 1 0.00
893 1 0.00
894 3 0.00
895 6 0.00
896 175 0.12
900 4 0.00
903 64 0.04
904 459 0.32
905 107 0.07
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGAGGGCGGGCGGGCA
CTAAGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACATGCCAATGCCATTTTTTGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATTGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
TTACGGTTCAGCATTTTATAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTTTTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTCG
TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGGCAATATAA
GGGCCAAATACCAGCACCCATCGCACATCATCTGCACACACCCCCCGGCCCCCACGATCACCGAA
ACCACAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
GCAGCACAGCACATCCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTGAGA
CTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAA
TGAGCGTGCGAGCACTCAGCTGGCCAAAGGGGCAGGATGAGCAAGCCGAGGATCGGTCGGGTCCC
CCTCTACGTGCTACCAATCCTGCTACCGCAACCCTAGATCCGATTCGATCC
Found at i:13513095 original size:708 final size:710
Alignment explanation
Indices: 13509933--13513113 Score: 4287
Period size: 719 Copynumber: 4.5 Consensus size: 710
13509923 GATCCGATCT
* * *
13509933 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGA
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC---CGA-CGGGC
* * *
13509998 GGGCGGGCGGGCCCTAAGCCAGCCA-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
62 GGGCGGGCGGGCACTACGCC-GCTAGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
13510062 AGGTGGGTTTAGGCACATCTTCATATTTTTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
126 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * * *
13510127 TATAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGACAAGACAACTGGTTTTCTATTTTTCAT
191 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
13510192 GATTTTCGAAACTTTTTACGGTTC-AGGA-TTTATAGAATTTTTTCGAAAGGATTTTTGGCCCCA
256 GATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
** * *
13510255 AACTTTTTAGTCGTGATCCTTGTATTTTTGTTGGCTTGCACAAAA-ATATTCAGCTAAAAACTCG
320 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATA-ATTCAGCTAAAAACTCG
13510319 AAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
384 AAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
**
13510384 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
449 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * * *
13510449 GATAGGGGGCCAATATAAGGG-TAAATACCAGCACCCATCGCACATCATCTGTGCACA-CCCCCC
514 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
13510512 GGCCCCCACGATCACCGGAACCCAATGCCGCCGGTCAGGTTCTC-CGGTGATGCTCCGACGATGG
579 GACCCCCCCGATCACCGGAACCCAATGCCGCCGATCAGGTTCTCTC---GA-G--CCG--G-TGG
* * * * * *
13510576 TGCCCCGACGAAGAAAAATGCAGCACTAGCACAT-CCCTGAGCCCAGCATGTGCTACCGTAACCC
635 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC-GAGCCCAGCATGTGCTGCAGCAACCC
13510640 TCGGTCTGGTCC
699 TCGGTCTGGTCC
* *
13510652 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG-AGCGAGCGGGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACCGA-CGGGCGGG
* *
13510716 CAGGCGGGCACTACGCCGGT-GAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
65 CGGGCGGGCACTACGCCGCTAG-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
13510780 TGGGTTTAGGCACATCTTCATATTTCTACATGCCACTGCCATTTTTATGGCTTGTAAATTCATAC
129 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
13510845 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAT
194 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
13510910 TTTCAAAACTTTTTACGGTTCGGGATTTTTCAAAATTTTTTCGAAAGGAATTTTGGCCCCAAACT
259 TTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
13510975 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTG
* *
13511040 TACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
389 TACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
13511105 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
** *
13511170 GGGGCCAATATAAGCACCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCGCCCGACC
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGACC
** * * * * * * * **
13511235 CCCCATACCGCCGGAACCCCAATGTCGTC-AGTTAGGTTCT-TCG-G-TGATGGTGCCCCGGTGA
583 CCCCCGATCACCGGAA-CCCAATGCCGCCGA-TCAGGTTCTCTCGAGCCGGTGGTGCCCCGACGA
* ** **
13511296 AGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTTTTGCCA-CAACCCTCGGTCCAGTC
646 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAACCCTCGGTCTGGTC
*
13511360 T
710 C
* * * * *
13511361 GATCTTAGACTGGGAATGATCTCCATATGCCTATGCCAACGGACGAAAC-AA--G-CGGGCGGGA
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACCGACGGGCGGGC
* * * *
13511422 GGGCGGGCACTACGCCGGC--CGAGAGACGTGATGCTCAAGCCGTGGATCGATAGGGTGCTAGGT
66 GGGCGGGCACTACGCC-GCTAGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
13511485 GGGTTTAGGTACATCTTCATATTTTTGCATGCCAGTGCCAATTTTATGGCTTGTAAATTCGTACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
13511550 ATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCATTTTCTATTTTTCACGATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
13511615 TTCAAAACTTTTTGCTGTACGAGATTTTTTAAAATTTTTTCGAAAAGAGTTTTCGCCCCAAACTT
260 TTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* * *
13511680 GGTAGATGTGATACTTGTATTTTTGTTAGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGT
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGT
* *
13511745 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGC
390 ACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
13511810 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
455 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* *
13511875 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCTCGGCCC
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGACCC
** *
13511940 CCCCGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGCTGCCCC
584 CCCCGATCACCGGAACCCAATGCCGCCGATCAGGTTCTCT--CGA-G--CCGGTG--G-TGCCCC
** * * * *
13512005 GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCTCAGCAAGTGCTGCTGAAACCCTCGGTCT
641 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCT
13512070 GGTCC
706 GGTCC
* * *** * * * * *
13512075 GATCTTAGATTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGTGGGCAGACGAGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACCGACGGGCGGGC
* * * *
13512140 AGGCGGGCACTACGCCGTTCA-GAGAAATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
66 GGGCGGGCACTACGCCGCT-AGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
13512204 GGGTTTAGGCACATCTTCATATTTCTGCACGGCGATGCCATTTTTATGGCTTGTAAATTCGTACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
13512269 ATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCATTTTTTATTTTTAACGATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
13512334 TTTAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
260 TTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
** * *
13512398 TCATAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAA-ACAATCAGCTAAAAACTCGAAGT
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATA-ATTCAGCTAAAAACTCGAAGT
*
13512462 GTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
388 GTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
13512527 GCAAACCTGAAAAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* *
13512592 GGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCATACCCCCCCGACC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACC
* * * **
13512657 CCCCCGATCATCGAAACCCCAATGCAGCCGATCAGGTTCTCT-G-G-CGGTGGTGCCCCGGTGAA
583 CCCCCGATCACCGGAA-CCCAATGCCGCCGATCAGGTTCTCTCGAGCCGGTGGTGCCCCGACGAA
* *
13512719 GAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTCAGT-TCGGTCC
647 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCT-GGTCC
* * * * *
13512783 GATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAATGAACCGACGGGTGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACCGACGGGCGGGC
* * * *
13512848 GGGCGGGCACTACGCCAGCTAGGA-AGACGGGTTGCGCAAGTCATGGATCGAAAGGGTGGTAGGT
66 GGGCGGGCACTACGCC-GCTAGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** * * * *
13512912 AAGTTTAGGGACATCTCCATATTTATGCATCCCAATGCCATTTTTATGGCTTGTAAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
13512977 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTTACGATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * ** *
13513042 TTTAAAACTTTTTACGGATCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCTTAAACCT
260 TTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
13513107 GGTAGAC
325 GGTAGAC
13513114 ATAATATTAG
Statistics
Matches: 2178, Mismatches: 241, Indels: 97
0.87 0.10 0.04
Matches are distributed among these distances:
703 18 0.01
704 476 0.22
705 25 0.01
706 3 0.00
707 2 0.00
708 344 0.16
709 110 0.05
710 4 0.00
711 8 0.00
712 1 0.00
713 2 0.00
714 106 0.05
715 211 0.10
716 235 0.11
717 35 0.02
718 46 0.02
719 533 0.24
720 19 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (710 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACCGACGGGCGGGC
GGGCGGGCACTACGCCGCTAGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
CCGATCACCGGAACCCAATGCCGCCGATCAGGTTCTCTCGAGCCGGTGGTGCCCCGACGAAGAAA
AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCTGGTCC
Found at i:13518839 original size:26 final size:26
Alignment explanation
Indices: 13518803--13518855 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13518793 TTGGTCTGAT
*
13518803 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13518829 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13518855 C
1 C
13518856 CTAAGTCAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13519743 original size:26 final size:26
Alignment explanation
Indices: 13519707--13519759 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13519697 TCGGTCTGAT
*
13519707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13519733 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13519759 C
1 C
13519760 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:13521223 original size:26 final size:26
Alignment explanation
Indices: 13521184--13521234 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13521174 TGATCCGATC
*
13521184 TTAGACTGGTAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
13521210 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
13521235 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:13522106 original size:26 final size:26
Alignment explanation
Indices: 13522068--13522120 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13522058 CTGATCTAAT
13522068 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
13522094 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13522120 C
1 C
13522121 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13522434 original size:26 final size:26
Alignment explanation
Indices: 13522382--13522434 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13522372 CGATTCTAAT
* * *
13522382 CTTAGACTGGGAATGAGCTCTGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
*
13522408 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGCATG
13522434 C
1 C
13522435 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:13522555 original size:21 final size:21
Alignment explanation
Indices: 13522531--13522579 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
13522521 CTACGTGCTA
*
13522531 TCGGTCCTGCTACTGCAACCC
1 TCGGTCCTGCTACCGCAACCC
13522552 TCGGTCCTGCTACCGCAACCC
1 TCGGTCCTGCTACCGCAACCC
*
13522573 TCAGTCC
1 TCGGTCC
13522580 GGTTCGATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.45, G:0.18, T:0.22
Consensus pattern (21 bp):
TCGGTCCTGCTACCGCAACCC
Found at i:13524219 original size:26 final size:26
Alignment explanation
Indices: 13524183--13524234 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13524173 CGGTCTGATT
13524183 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
*
13524209 TTAGTCTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
13524235 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:13525113 original size:26 final size:26
Alignment explanation
Indices: 13525077--13525129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13525067 CTGGTCAGAT
13525077 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
13525103 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
13525129 C
1 C
13525130 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:13526014 original size:26 final size:26
Alignment explanation
Indices: 13525974--13526026 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13525964 CCGGTCTGAT
13525974 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
*
13526000 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
13526026 C
1 C
13526027 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:13526906 original size:26 final size:26
Alignment explanation
Indices: 13526877--13526932 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
13526867 CTAGTCTGAT
* *
13526877 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13526903 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13526929 CTTA
1 CTTA
13526933 AGTCGACCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13527179 original size:903 final size:900
Alignment explanation
Indices: 13522292--13532192 Score: 11382
Period size: 899 Copynumber: 11.1 Consensus size: 900
13522282 CCCAATGCCG
* * * *
13522292 TCCGACGATGGTGCCCC-AGTGAAGAAAAATGCGGCACCAACACATACCTGAGCCCAGCATGTGC
1 TCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
13522356 TGCCGCAAGCCTCGGTC-GATTCTAATCTTAGACTGGGAATGAGCTCTGCATGCTTAGACTGGGA
65 TACCGCAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
* * * ** * *
13522420 ATAAACTCCGTATGCCTAAGTCAAGCCACGAAATGAGCGTGCGGGCGCTCAGCCAACCAAAAGGG
129 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * *
13522485 TGGGATGCGCAAGCTGGGGATCGACTGGGTCCCCCTCT-ACGTGCTATCGGTCCTGCTACTGCAA
194 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGA-GTGC--T--G-CC-G--A-T----
*
13522549 CCCTCGGTCCTGCTACCGCAACCCTCAGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTAT
245 -CCT--G--CTGCT---GCAACCCTCAGTCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
13522613 GCCTAAGCCAACGGATGAAATGAGCGGACGGGCGGGCGGGCGGGCACTAGGTCGGCCAGAGAGAC
301 GCCTAAGCCAAC-CACGAAACGAGCGGGCGGGCGGGCGGGC--GCACTACGTCGGCCAGAGAGAC
* * * *
13522678 GAGATGCGCAAGCCGTGGATCGATGGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
363 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
*
13522743 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
428 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* ** ** *
13522808 CATGGCAAGACGACTCGTTTTCAATTTTTCACGATTTTCAAAACTTTTTGTGGTTTC-GAATTTT
493 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGGGATTTT
* ** * *
13522872 TTTAAATTTTTTCGGAAGGAGAGTTGGCCCCAAACTTGATAGACGTGATCCTTATATTTTTGTTG
557 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* ** * *
13522937 GTATGCACAAAAAAATTTTGCTAAAATA-TTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAG
622 GCATGCACAAAAAAATTCAGCTAAAA-ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
13523001 GTGCCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
686 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
13523066 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
751 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * **
13523131 ACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCTCCGATCGCCGGAACAGCAATGCCGCCG
816 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
13523196 GTCAGGTTCTCCGGTGATGC
881 GTCAGGTTCTCCGGTGATGC
* * * * *
13523216 TCCAACGATGGCGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
13523281 ACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * **
13523346 GAACTCCATGTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGTCAGCTAGCCAGAGGGGCG
131 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * *
13523411 GGATGCGCAAGTCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGTTGCCGCAACCC
196 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCCTGCTGCTGCAACCC
** * ** **
13523476 TTGGTCTGGTCCGATCTTAGACTTTGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
261 TCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAGC
* * ** *
13523541 GGGCGAGCGGGC-GG-GCACTACGTCGGCCAGAGAGACGAGATGCATAAGTCGTGGATCGATAGG
325 GGGCGGGCGGGCGGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * **
13523604 GTGGTAGGTGAGTTTAGGCACATCTTCATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAA
390 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * *
13523669 ATTTATACAACGGTCCTTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
455 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
13523734 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
520 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* ** *
13523799 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAACCTCAGCTCAAAAC
585 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * * * * *
13523864 TCAAAGTGTATAAGATTTTGTGACTATTTGTAAAAAGTGTCCTCAATTCAAACACTTTAATGGCT
650 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
13523929 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
715 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * * * * *
13523994 AGGGATAGGAGGCTAAAATAAGGGCCAAGTACCAGCACCCATTGCACATCTTATACCCACACCCC
780 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
13524059 CCCGACCCCCCGATCG-CTGAAGCCCCAAT---G-C---C--G---TCC---GA---
845 CCGGCCCCCCCGATCGTCGGAA-CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
* * * * *
13524097 T-----GATGGTGCCCCAACAAAGAAAAATACGGGACCAGCACATGCCCGAGCCTAGCATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * *
13524157 GCCACAACCCTCGGTCCGGTCTGATTTTAGACTGGGAATGAACT-TCGTATGCTTAGTCTGGGAA
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAA
* * * * * *
13524221 TGAACTTCGTATGCCTAAGTCAAGCTACGAAATGAGCGTGCTGGCGCTCAGCCGGCTAGAGGGGC
130 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * ** *
13524286 GGGATGCGCAAGCCGAGGATTGACCGGGTCTCCCTGT-ACGTGCTTTCGATCCTGCT-ATCGCAA
195 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGA-GTGCTGCCGATCCTGCTGCT-GCAA
* * * * * * **
13524349 CCCTCGGTCTGATCCAATCCTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATTAAACG
258 CCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACG
* * *
13524414 A----GCGGGCGGGC-GG-GCACTACGTCGGTCAGAGAGACAGGATGCACAAGCCGTGGATCGAT
322 AGCGGGCGGGCGGGCGGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
13524473 AGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGGCAATGCCTTTTTTATGGCTTG
387 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * *
13524538 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCATTTTTTA
452 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
13524603 TTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTC
517 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
13524668 GGCCCCAAACTTGGTAGACATGATCCTTGTACTTTTT-TTGGCATGCATAAAAAAATTCAGCTAA
582 GGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* ** * *
13524732 AAAATCGACCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAAT
646 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
13524797 GGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCAAGGTTT
711 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
13524862 GATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
776 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * ** *
13524927 CCCCCCGGCCCACCCGATCGTCGGAACGCCAATGCCGTGGGTCAGATTCTCCGGTGATGC
841 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
* *
13524987 TCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * **
13525052 ATCGTAACCCTCGGTCTGGTCAGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * *
13525117 GAACTCCGTATGCCTAAATCAACCCACGAAACGAGCATGTGGGCGCTCAGCCGGCCAGAGGGGCA
131 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* ** ** * * * *
13525182 TGATGCGCAAGCCAAGGATCGGTCGGGTCACCCTCT-ATGTGCTGCCGATCCTACTACCGCAACC
196 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGA-GTGCTGCCGATCCTGCTGCTGCAACC
* * * * **
13525246 CTCGGTCCAGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGAG
260 CTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGAG
* *
13525311 CGGACGGGCGGG-TGG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
324 CGGGCGGGCGGGCGGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * * *
13525374 GGGGGTAGGTGCGTTTAGGCACATCTTTATATTTCTGTGTGGCAATGCCATTTTTATGGCTTGTA
389 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
** *
13525439 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCACAAGACGACTCATTTTCTATT
454 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * ** * * * * * *
13525504 TGTCACTATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAGAATTTTTTTGCAAGAAATTTTGG
519 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * * *
13525569 CCCCAAATTTGGTAAACGTGATCCTTTTATTTTTAG-TGACTTGTC-CAAAAAAATTCAACTAAA
584 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-GTTGGCATG-CACAAAAAAATTCAGCTAAA
13525632 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
647 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
13525697 GCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GCGGTGTGAGTTCTAGAGGTTTG
712 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
13525761 ATGAGGGACAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACAC
777 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * *
13525826 GCCCCGG-CCCCCTGATCGTCGGAACCCTAATGCCGCCGGTCAGATTCTCCAGTGATGC
842 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
*
13525884 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGACCAGCATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
13525949 ATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAACT-TCGTATGCTTAGACTGGGAA
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAA
* * * * *
13526013 TGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGGCCAAAGGGGT
130 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * *
13526078 GGGATGCACAAGCCGGGGATCGACCGGGTCCACCTCTTCA-TGCTGCCGATCCTACTGCTGCAAC
195 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC-TGAGTGCTGCCGATCCTGCTGCTGCAAC
* * * * * *
13526142 CCTC-GATCTGATCCAATCTTAGACTGGGAATGAACACCGTATGCCTACGCCAACAGACGAAACG
259 CCTCAG-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CACGAAACG
* * * * *
13526206 AGCGGGCAGACGGACGGGCGAGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
322 AGCGGGCGGGCGGGCGGGC--GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
13526271 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
385 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
*
13526336 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
450 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** *
13526401 TATTTTTCACGATTATTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGCGTT
515 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * * *
13526466 TTTGCCCCAAACTTGGTAGACATGATCCCTGTAATTTTCTTGGCATGCACAAAAAAATTCAGCTA
580 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * * * *
13526531 AAAACTCAAAATGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAAACACTTGAA
645 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
13526596 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGCGTGAGTTCTCTAGGTT
710 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
13526661 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCTTGTGCGCAC
775 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** *
13526726 ACCCCCCAACCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGC
840 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
* * * * *
13526787 TCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCTTGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
13526852 ATCGCAACCCTTGGTCTAGTCTGATCTTAGACTGGGAATGAGCTCTGTATGCTTAGACTGGGAAT
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * * * *
13526917 GAACTCCGTATGCTTAAGTCGACCAACGAAACGAGTGTGCGGGCGCTTAGCCGGCCAGAGAGGCG
131 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *
13526982 GGATGCGGAAGCCGTGGATCGACCGGGTCCCCCTCTGAGTGGTGCCGATCTTGCTGCTGCAACCC
196 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCCTGCTGCTGCAACCC
* * *
13527047 TCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCATCGAAACGAGC
261 TCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCA-CGAAACGAGC
* * * * *
13527112 GGGCGGGTGGGTGGGCAGCCACTGCGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATGGATA
325 GGGCGGGCGGGCGGGC-G-CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
** * *
13527177 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGTCTTGG
388 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
13527242 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTAT
453 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
13527307 TTTTCAGGATTTTTGAAACTTTTTGCCGTTCGGGATTTTTTAAAATTTTTTTGAAAGGGGTTTTG
518 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* ** *
13527372 GCCCCAAAATTTTTAGACGTGATCCTTGTA-TTTTGTTGGCATGTACAAAAAAATTCAGCTAAAA
583 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
13527436 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGG
648 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
13527501 CTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGA
713 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * *
13527566 TGAGCGATAGGCGGCCAATATGAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACCCC
778 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * *
13527631 CCCTCGG-CCCCCCGATTGTCGGAACCCCAGTGTCGTCAGTCAGGTTCTCCGATGATGC
843 CCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
* *
13527689 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * ** * * *
13527754 GCAGGC-ACCCTC-GACTCGATCCAATCCTAGATTGGGAATGAACTATGTATGCTTAGACTGGGA
66 AC-CGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
* * * * ***
13527817 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTTAGTTTAGCCAGA-GG
129 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGG
** * * *
13527881 GCGGGATGCG-AAG-CGACGATCGACCAGGT---CCTCT-ACGTGCTAACGCTGACTCCTGCTAC
193 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGA-GTGCT---GCCGA-TCCTGCTGC
* * *
13527940 ATGC-ACCCTC-GATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGA
253 -TGCAACCCTCAG-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-A
* * * * ** *
13528003 CGAAACGAGCGGGC-GGCGGGC--AC-TATTAACGCCAACCAGAGAGATCAAGGAATGCGCAAGC
315 CGAAACGAGCGGGCGGGCGGGCGGGCGCACT-ACGTCGGCCAGAGAGA-C--GGGATGCGCAAGC
* *
13528064 CGTGGATCGATA-GGTGGTACGTGGGTTTAGGCAACATCTTCATAGTTTCTGCAT-CCAATGCCA
376 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC-ACATCTTCATA-TTTCTGCGTGCCAATGCCA
*
13528127 GTTTTTATGGCTTGGTAAATTCATACAATGGTCCCTTAAGCGCTTTCA-GTGGAAG-TTCTTGG-
439 -TTTTTATGGCTT-GTAAATTCATACAATGGTCCCTTAAGC-C-TTCACGT-GAAGTTTCATGGC
* *
13528189 AAGAAGCACTCGTTTTCTATTTTTCACGATTTTTTG-AACTTTTTA-GGTTCGAGATTTTTTAAA
499 AAGACG-ACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * *
13528252 ATTTATTTCGAAAGCGAG-TTT--CACCAAAC-TGGTAGA-ATGAT-C-TGTTATTTTTTGTTGG
562 ATTT-TTTCGGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TA-TTTTTGTTGG
13528310 CATGCACAAAAAAATTCAGCT--AAACT-GAAGTGTA-ACAGATTTTGTGACCATTTGAAAAAAG
623 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA-AGATTTTGTGACCATTTGAAAAAAG
* * *
13528371 TGT-CCCATTTTAGACACTTTAATGGCCACTGGCAGCAAACTTGTAAAATCTCAAATGCT-TTTA
687 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * *
13528434 AGGGGGTGTGA-TATCTCCAGGTTTGATGAGGGATAAGGTGCCGAATAT-AGGTCCAAGTA-CAG
752 AGGGGGTGTGAGT-TCTCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAG
* * * * * *
13528496 CACCCATCGCACACCTTGTGATGCAC-CCCCCCCGCCCCCCCGATCG-CAGAACCCCAATGTCGC
815 CACCCATCGCACATCATGTG-CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* *
13528559 CGGTCAGGTTCTCTGGCGATGC
879 CGGTCAGGTTCTCCGGTGATGC
* * * * *
13528581 TTCGACGATGGTGCCCCGGCAAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAGCATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
13528646 GCCACAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACT-TCGTATGCCTAGACTGGGAA
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAA
* * *
13528710 TAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGC
130 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * ** * * * **
13528775 GGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTGCCACAACC
195 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCCTGCTGCTGCAACC
* * * *
13528840 CTCAATCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGAG
260 CTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAG
* * * * *
13528905 CGGGCTGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACAGGATGTGCAAGCCGTGGATCGAT
324 CGGGCGGGCGGGCG-G-GCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
13528970 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
387 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
13529035 TAAATTCATACAATGGTCCCTT-A--C--C-C-----G-TTC-T-------C-A----------A
452 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * * *
13529069 TTTTTCACG-TTTTTCAAAACTTTTTACGGTTCGAGATATTTTAAAATTTTTTTGGAGGGAGCTT
517 TTTTTCACGATTTTT-GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
13529133 TGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTTC-GCTA
581 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTA
*
13529197 AAATA-TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
645 AAA-ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
13529261 ATGGCTACTGGCAGC-AACTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGT
709 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
13529325 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
774 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * * *
13529390 CACCCCCCGGCCCCTCCGATCGCCAGAACCCCAATGCCACCAGTCAGGTTCTCTGAT-ATTGC
839 CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA-TGC
* * * * *
13529452 TCCGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGTACATGCCTGAGCCCAACATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
13529517 GCCGCAA-CC-C--TC--G---G-TC----A-T--G--T---C-C-G-AT-CTTAGACTGGGAAT
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * *
13529556 GAACTCC-TATGCCCAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCATCCGGCAAGAGGGGCG
131 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * *
13529620 GGATGCGTAAGTCGGGGATCGATCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC--CAGAGC
196 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCCTGCTGCTGCA-A-C
* * * * ** * * *
13529683 CCTCGGTTCGATCCAATCTTAGACTTTGAATGAACTCCGTATGCCTAAGCTAACTGACGAAATGA
259 CCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CACGAAACGA
** * * * * **
13529748 ----ATGGGTGGG-TGG-TCATTACGTCGGCCAGAGAGACGGGATGCGCAAGTGGTGGATCGATA
323 GCGGGCGGGCGGGCGGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
**
13529807 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGT
388 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* *
13529872 AAATTCATACAATGGTCTCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTAT
453 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** * * * *
13529937 TTTTCATGATTTTCAAAACTTTTTGCGATTCGGGATTTCTCAAAATTTTTTCGGAAGGAGTTTTG
518 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * *
13530002 GCCCCAAACTTGGTAAACATGATCCTTGTATTTTTTTTTGCCATGCACAAAAAAA-T---CTAAA
583 GCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
13530063 AACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTACCCATTTTAGACACTTTAATG
647 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
13530128 GCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
712 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * *
13530193 ATGAGGGATAGGGGCCCAACATAAGGGCCAAGTACCAGTACCCATCAG-ACATCATGTACGCACA
777 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACA
* * * * * ***
13530257 CCCCCCGACCCCCCTGATCGACGGAACCCCAATGCCCCCAGTCAGGTTCTCCGACAATGC
841 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
*
13530317 TCCGACGATGGTGCCCC-AGTGAAGAAAAATGCGGCACCAG--C-T--------------TGTGC
1 TCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
13530364 TGCCACAACCCTCGGTC----C-G------G--T----CTG-A-TCT-TA------GACTGGGAA
65 TACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
* * *
13530403 TGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGC
130 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * **
13530468 GGGATGCGCAAGCTGGGGATCGACTGGGTCCCTCTCTGCGTGCTGCTGATCCTACTGCTACAATG
195 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCCTGCTGCTGCAACC
* * * *
13530533 CTCAGTCCGGTCTAATCTTAGACTGGGAATCAACCCCGTATGCCTAAGCCAACTGATGAAACGAG
260 CTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CACGAAACGAG
* * **
13530598 AGGGCGGGCGGGC-GG-GCACTACG-CTGACCAGAGAGACGGGATGCATAAGCCGTGGATCGAT-
324 CGGGCGGGCGGGCGGGCGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *
13530659 GAGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
388 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
13530724 AAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
453 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** *
13530789 TTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTG
518 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * *
13530854 TCCCCAAACTTGGTTGACATGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
583 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
13530919 ACTCGATGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
648 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
13530984 CCACTGGCAGGAAACCTATAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCTTAGAGGTTTT
713 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGG-TTT
* * *
13531048 GATGAGGGATAGGGGGCCAATCATAAGGTCC-AGTACCAGCACCCATCGCACATCTTGTGTGCAC
776 GATGAGGGATAGGGGGCCAAT-ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * * *
13531112 ACCCCCTCGGCCCTTCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
840 ACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
* * *
13531174 TCCGACGATGGTGCCTCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * ** * * *
13531239 GCTGCAATGCTCAGTCTGGTCTGATCGTAGACTGGGAATCAACT-TCGTATGCTTAGACTGGGAA
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAA
* * * *
13531303 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGTCGCTCAGTCGGCCAGAGGGGC
130 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * * *
13531368 AGGATGCGTAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCCTACTACTACAACC
195 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCCTGCTGCTGCAACC
* * * * * * * * * *
13531433 CTCGGGCTGATCTAATGTTAGACTGTGAATGAACCCCGTATGCCTAAGCCAAACGACAAAACGAA
260 CTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCACGAAACGAG
* * * * * * * *
13531498 TGGGCTGGCGGGCGAGCGGGCACTACGTTGGCCAGAGAGACCGAATGTGCAAGCCGTGGATCGAG
324 CGGGCGGGCGGGCG-G-GCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
13531563 AGGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCTATTTTTATGTCTTG
387 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
13531627 TAAATTCATACAACGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
452 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
13531692 -TTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-AAATGGAGTTT
517 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTT
*
13531755 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACCAAAAAATTCAGCTAA
581 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
13531820 AAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAGAAAGTATCCCCATTTCAGACACTTTAAT
646 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
13531885 GGCCACTGGCAGGAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
711 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
13531950 GATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA
776 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * **
13532015 CCCCCCCGACCCCCCCGATCG-CTGGAAACCCAATGTCGTCGGTCAGGTTCTCCGACGATGC
841 -CCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
* * * * *** * *
13532076 TCCGGCGATGGTGCCCCGGCAAACAAAAATGCCATACCAGCACATGCCCGAGGCTAGCATGTGCT
1 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
13532141 GCCTCAACCCTCGGGCCGGTCCGATCTTATACTGGGAATGAACT-TCGTATGC
66 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGC
13532193 CTAAGCCATC
Statistics
Matches: 7727, Mismatches: 976, Indels: 570
0.83 0.11 0.06
Matches are distributed among these distances:
836 124 0.02
837 2 0.00
838 1 0.00
839 1 0.00
840 5 0.00
841 1 0.00
842 3 0.00
843 1 0.00
844 155 0.02
845 19 0.00
846 2 0.00
847 2 0.00
848 32 0.00
849 154 0.02
850 4 0.00
851 24 0.00
852 217 0.03
853 46 0.01
854 19 0.00
855 102 0.01
856 57 0.01
857 89 0.01
858 1 0.00
859 6 0.00
860 4 0.00
861 30 0.00
862 23 0.00
863 9 0.00
864 84 0.01
865 224 0.03
866 9 0.00
867 85 0.01
868 89 0.01
869 86 0.01
870 43 0.01
871 94 0.01
872 478 0.06
873 9 0.00
874 17 0.00
875 2 0.00
876 268 0.03
878 1 0.00
879 3 0.00
880 4 0.00
881 1 0.00
884 5 0.00
885 1 0.00
886 1 0.00
887 6 0.00
889 1 0.00
890 2 0.00
891 9 0.00
892 201 0.03
893 140 0.02
894 94 0.01
895 365 0.05
896 72 0.01
897 361 0.05
898 140 0.02
899 915 0.12
900 232 0.03
901 505 0.07
902 756 0.10
903 896 0.12
904 174 0.02
905 3 0.00
906 3 0.00
908 1 0.00
910 3 0.00
915 1 0.00
916 1 0.00
919 2 0.00
920 1 0.00
922 1 0.00
924 203 0.03
925 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCCTGCTGCTGCAACCC
TCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGCG
GGCGGGCGGGCGGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
Found at i:13527817 original size:26 final size:26
Alignment explanation
Indices: 13527781--13527831 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13527771 GATCCAATCC
*
13527781 TAGATTGGGAATGAACTAT-GTATGCT
1 TAGACTGGGAATGAACT-TCGTATGCT
13527807 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
13527832 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:13528709 original size:26 final size:26
Alignment explanation
Indices: 13528673--13528726 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
13528663 GGTCCGATCT
* * *
13528673 TAGATTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATAAACTCCGTATGCC
13528699 TAGACTGGGAATAAACTCCGTATGCC
1 TAGACTGGGAATAAACTCCGTATGCC
13528725 TA
1 TA
13528727 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCC
Found at i:13531302 original size:26 final size:26
Alignment explanation
Indices: 13531266--13531316 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13531256 GGTCTGATCG
*
13531266 TAGACTGGGAATCAACTTCGTATGCT
1 TAGACTGGGAATCAACTCCGTATGCT
*
13531292 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATCAACTCCGTATGC
13531317 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATCAACTCCGTATGCT
Found at i:13533251 original size:706 final size:702
Alignment explanation
Indices: 13531450--13533612 Score: 2864
Period size: 706 Copynumber: 3.0 Consensus size: 702
13531440 TGATCTAATG
* * * *
13531450 TTAGACTGTGAATGAAC-CCCGTATGCCTAAGCCAAACGACAAAACGAATGGGCTGGCGGGCGAG
1 TTAGACTGGGAATGAACTCCC-TATGCCTAAG-CAAACGACGAAACG-A--GGCGGGCGGGCGGG
* * * ** * *
13531514 CGGGCACTACGTTGGCCAGAGAGACCGAATGTGCAAGCCGTGGATCGAGAGGGT-GTAGGTGGGT
61 CGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
13531578 TTAGGCACATCTTCATATTTTTGCATGCCAATGCTATTTTTATGTCTTGTAAATTCATACAACGG
126 TTAGGCACATCTTC-TATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
13531643 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACGATTTTTG
190 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* *
13531707 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-AAATGGAGTTTTGGCCCCAAACTTGGT
255 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGT
*
13531771 AGACGTGATCCTTGTATTTTTGTTGGCATGCACCAAAAAATTCAGCTAAAAACTCGAAGTGTACA
319 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
13531836 AGATTTTGTGACAATTTGAAGAAAGTATCCCCATTTCAGACACTTTAATGGCCACTGGCAGGAAA
384 AGATTTTGTGAC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGGAAA
*
13531901 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGG
448 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
13531966 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGACCCCCCC
513 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCC
* *
13532031 GATCGCTGGAAACCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGC
578 GATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGGC
* * * *
13532096 AAACAAAAATGCCATACCAGCACATGCCCGAGGCTAGCATGTGCTGCCTCAACCCTCGGGCCGGT
632 AAACAAAAATGCCACACCAGCACATGCCCGAGGCCAGCATGTGCTGCCGCAACCCTCGGGCCAGT
*
13532161 CCGATC
697 ACGATC
* * * ** *
13532167 TTATACTGGGAATGAACTTCGTATGCCTAAGCCATCCGACGAAATGAGCGGACGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCCTATGCCTAAG-CAAACGACGAAACGA--GG-CGGGCGGGCGGGC
* * * * ** *
13532232 GGGCACTATGCCGGCCAAAGAGATGGGATGTGTC-AGTCGTGGATCGATAGGATGGTAGGTGGGT
62 GGGCACTACGTCGGCCAGAGAGACGGGATG-CACAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
13532296 TTTGGCACA-----TATTTCTT-CCTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGG
126 TTAGGCACATCTTCTATTT-TTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
13532355 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCA
190 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * * *
13532420 AAATTTTTTGCAGTTCGAGATTTTTTAAAACTTTTTT-GGAAGGAGTTTTGGCCCCAAATTTGGT
255 AAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
13532484 AGAGGTGATCCTTGTATTTTTGTTGGTATGCACACAAAAAA-TCAGCTAAAAAATCGAAGTGTAC
319 AGACGTGATCCTTGTATTTTTGTTGGCATGCACA-AAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
13532548 AAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
383 AAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGGAA
* *
13532613 ACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
447 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
13532678 GCCACTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCTTCGGCCCC
512 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC--CGGCCCC
* ** *
13532743 CCCGATCGCCGGAACCCCAATGTCGTCGGTTAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAAA
575 CCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGCAAACAAAA
*** *
13532808 ATGTGGCACCAGCACATGCCCGA-GCACAGCATGTGCTGCCGCAACCCTCGGTCCAGTACGATC
640 ATGCCACACCAGCACATGCCCGAGGC-CAGCATGTGCTGCCGCAACCCTCGGGCCAGTACGATC
13532871 TTAGACTGGGAATGAACTCCCTATGCCTAAGCAAACTGACGAAACGA-GCGGGCGGGCGGGCGGG
1 TTAGACTGGGAATGAACTCCCTATGCCTAAGCAAAC-GACGAAACGAGGCGGGCGGGCGGGCGGG
*
13532935 CACTACGTCGGCCAGAGGGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTACGTCGGCCAGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
13533000 GCACATCTTCTTATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
130 GCACATCTTC-TATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCT
13533065 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * * *
13533130 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGACCCCAAACTTGTTAGACA
259 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
13533195 TGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATT
324 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
13533260 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGAAGGAAACCTAT
389 TTGTGA-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGGAAACCTAT
* * *
13533325 AAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGATTTGATGAGGGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
13533390 ATAAGGTCCAAGTACCAGCACCCATCGCACATCTTGTGTGCACACCCCCCCGGTCCCTCCGATCG
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCG
* * ** * *
13533455 CCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGTCGATGGTGCCCCAACGAAGA
583 CCGGAACCCCAATGTCGTCGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGGCAAACA
* * * * **
13533520 AAAATGCCACACCAGCACATGCCCGAGCCCATCATGTGCTGCTGCAACCCTCGGTCTGGT-CTGA
637 AAAATGCCACACCAGCACATGCCCGAGGCCAGCATGTGCTGCCGCAACCCTCGGGCCAGTAC-GA
13533584 TC
701 TC
* *
13533586 GTAGACTGGGAAATGAACTCCGTATGC
1 TTAGACTGGG-AATGAACTCCCTATGC
13533613 TTAGACTAGG
Statistics
Matches: 1270, Mismatches: 138, Indels: 77
0.86 0.09 0.05
Matches are distributed among these distances:
699 1 0.00
700 75 0.06
701 1 0.00
703 5 0.00
704 148 0.12
705 15 0.01
706 379 0.30
707 3 0.00
712 93 0.07
713 287 0.23
714 17 0.01
715 121 0.10
716 19 0.01
717 86 0.07
718 20 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (702 bp):
TTAGACTGGGAATGAACTCCCTATGCCTAAGCAAACGACGAAACGAGGCGGGCGGGCGGGCGGGC
ACTACGTCGGCCAGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCTATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGGAAACCTATAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCG
GAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGCAAACAAAAATGCCACACCA
GCACATGCCCGAGGCCAGCATGTGCTGCCGCAACCCTCGGGCCAGTACGATC
Found at i:13533632 original size:26 final size:27
Alignment explanation
Indices: 13533587--13533638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
13533577 GGTCTGATCG
*
13533587 TAGACTGGGAAATGAACTCCGTATGCT
1 TAGACTAGGAAATGAACTCCGTATGCT
13533614 TAGACTAGG-AATGAACTCCGTATGC
1 TAGACTAGGAAATGAACTCCGTATGC
13533639 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (27 bp):
TAGACTAGGAAATGAACTCCGTATGCT
Found at i:13535587 original size:714 final size:708
Alignment explanation
Indices: 13533772--13536897 Score: 3277
Period size: 720 Copynumber: 4.4 Consensus size: 708
13533762 CGGTCTGATG
* * * *
13533772 TTAGACTGTGAATGAATTCCGTATGCCTAATCCAACCGACAAAACGAACGGGCGA----GC-GGG
1 TTAGACTG-GAATGAACTCCGTATGCCTAA-GCAATCGACGAAACG-ACGGGCGAGCGGGCGGGG
* *
13533832 CACTACG-TCGGCCAGAGAGACCGGATGTGCAAGCCGTGGATCGAGAGGGTGGTAGGTGGGTTTA
63 CACTACGCT-GGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
13533896 GGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGTCTTGTAAATTCATACAACGGTTC
127 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
13533961 CTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
192 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
* * *
13534026 CTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC-AAATGGATTTTTGGCCCCAAACTTGGTAGA
257 CTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGAAA-GGAGTTTTGGCCCCAAACTTGGTAGA
* * * ** * * *
13534090 CGTGATCCTTGTATTTTTGTTGGCTTGCATAAAGCAATTCAGCTAAAAACTCAAAGTGTAGAAGA
321 CGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
* * * * *
13534155 TTTTGTGACCAATTGAACAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCTGCAAACCT
386 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
13534220 GTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCA
451 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCA
* * * *
13534285 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGAG-CACACACCCCCCCGCCCCCCCGAT
516 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGACACACCCCCCCGACCCCCCGAT
* * * * **
13534349 CGTCGGAA-ACCCAATGTCGTTGGTCAGGCTCTCTGACGATGCTCTGGCGATGGTGCCCTGGCAA
581 CGTCAGAACACCCAATGTCGTCGGTCAGG-T-TCT-AC-ATGC-C--GAGATGGTGCCCCGGTGA
* * * * * **
13534413 AGAAAAATGCGGCACCAGC-ACAT-GC-CCGAGGCTAGCCTGTGCTGCCGCATCCCTCGGGCCGG
639 AGAAAAATACGG-ACCAGCAACATATCGCCGAGG-TAGCATGTGCTGCCGCAACCCTCGGTCCAA
13534475 TCCAATC
702 TCCAATC
* *
13534482 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCATCTGACGAAATGAGCGGACGGGCGGGCGGGC
1 TTAGACT-GGAATGAACTCCGTATGCCTAAGCAATC-GACG-AA--A-C-GACGGGCGAGCGGGC
** * * * *
13534547 GGGCAGGCACTATACCGGCCAGAAAGACGGGA--AGCATCAGCCGTGGATCGATTGGGTGGTAGG
59 -GG--GGCACTACGCTGGCCAGAGAGACGGGATGTGCA--AGCCGTGGATCGATAGGGTGGTAGG
* * *
13534610 TCGGTTTAGGCACATCTTCATATTTCTTCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
119 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
13534675 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAA-A-GACTCATTTTCTATTTTTCATGAT
184 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
13534738 TTTCAAAACTTTTTACAGTTCGAGATTTTTTAAAATATTTTCGAAAGGAGTTTTGGCCCCAAACT
249 TTTCGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * *
13534803 TGGTAGACATGATCCTTGTATTTTTGTTGGAATGCACAAAAAAAATCAGCTACAAACTCGAAGTG
314 TGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTG
*
13534868 TACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
379 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
13534933 CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGCAG-TCTTGAGGGTTTGACGAGGGAT
444 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCTCGA-GGTTTGATGAGGGAT
* *
13534996 AGAGGGCCAATATATGGGCCAAGTACCAGCAACCATC-CACATCATGTGTGTAACACACCCTCCC
507 AGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG--ACACACCC-CCC
** * * * *
13535060 CGACGGCACGATCG-CCGAACACCCAAT-TTGCCGGTCAGGTT-T-C-TGCCGAGATGGTGCGCC
569 CGACCCCCCGATCGTCAGAACACCCAATGTCGTCGGTCAGGTTCTACATGCCGAGATGGTGC-CC
* *
13535120 CGATTGAAG-AAAATACGGACCAGCAACATATCAGCCGAGTGTA-CATGTGCTGTCGCAACCCTC
633 CG-GTGAAGAAAAATACGGACCAGCAACATATC-GCCGAG-GTAGCATGTGCTGCCGCAACCCTC
* * *
13535183 GGTCC-ATACGATA
695 GGTCCAATCCAATC
* *
13535196 TTAGACT-GAATAAACT-TGTAGTGCCTAAGCAATCGACGAAACGAACGGGCGAGCGGGCTGTGG
1 TTAGACTGGAATGAACTCCGTA-TGCCTAAGCAATCGACGAAACG-ACGGGCGAGCGGGC-G-GG
* *
13535259 GCACTACGCTGGCCAGAGGGACGGGATGTGCAAGCCCGTGGATTTCGATAGGGTGGGTTGGTGGG
62 GCACTACGCTGGCCAGAGAGACGGGATGTGCAAG-CCGTGGA--TCGATAGGGT-GGTAGGTGGG
13535324 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTCTTTATGGCTTGTAAATTCCATGACA
123 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT-TTTATGGCTTGTAAATT-CAT-ACA
*
13535389 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTTCTAATTTTCACGATT
185 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * **
13535453 TTCCAAACTTTTTGCAATTCGAGATTTTTTTAAATTTTTTCGGAAAGTA-TTTTGGCCAAAAACT
250 TTCGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACT
* * *
13535517 TGGTAGACGTGATCCTCGTATTTTTGGTT-GCATGCACAAAAAAATTCACCTAAAAACTCGAAGC
314 TGGTAGACGTGATCCTCGTATTTTT-GTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
* *
13535581 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCT
378 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
13535646 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTCTGATGAGGGATA
443 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13535711 GAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG-CACACCCCCCTGGC
508 GAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGACACACCCCCCCGAC
* *
13535775 CCCCCGATCGTCAGAAC-CTCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
573 CCCCCGATCGTCAGAACACCCAATGTCGTCGGTCAGGTTCT---AC-ATG--CCGA-GATGGTGC
* * * ** * * * *
13535839 CCCGGTGAAGAAAAATAC-TA-CACCAACACAT-GCCCGAGCCCAGCATGTGCTACCGTAAGCAT
631 CCCGGTGAAGAAAAATACGGACCAGCAACATATCG-CCGAG-GTAGCATGTGCTGCCGCAACCCT
* *
13535901 CGATCCAATCCTATC
694 CGGTCCAATCCAATC
* *
13535916 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGA---GC-A---GGC-GGG-
1 TTAGACT-GGAATGAACTCCGTATGCCTAAG-CAATCGACGAAACGACGGGCGAGCGGGCGGGGC
* * * *
13535972 --TAGGC-GG---G-TAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
64 ACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * * *
13536030 CACATCTTAATATCTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATTCATTCACTGGTCCCT
129 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
13536095 TAAGCCTTCACGTGAACTTGCATGGCAAGACGGCTCGTTTTCTATTTTTCATGATTTTTGAAACT
194 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
*
13536160 TTTTACAGTTCGAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACC
259 TTTTACAGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
13536224 TGATCC-CTGTATTTTTGTTGGCAGGCACAAAAAAAAATCAGCGAAAAACTCGAAGTGTACAAGA
323 TGATCCTC-GTATTTTTGTTGGCATGCAC-AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
* * *
13536288 TTTTGTGACCATTTCAAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACC
386 TTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
13536353 TGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
450 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCC
* *
13536418 AATATAAGGGCCAAGAACTAGCACCCATCGCACATCA--TGT-ACACACACCCCCCG-CCCCCCG
515 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGACACAC-CCCCCCGACCCCCCG
* * *
13536479 ATCGTCGGAAC-CTCAATGTCGTCGATCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGT
579 ATCGTCAGAACACCCAATGTCGTCGGTCAGGTTCT--A-C-ATG--CCGA-GATGGTGCCCCGGT
** * ** * *** *
13536543 GAAGAAAAATGTGGCACCAGC-AC--AT-GCTCGAGCTCAGCATGTGCTGCATCAACCATTTTTT
637 GAAGAAAAATACGG-ACCAGCAACATATCGC-CGAGGT-AGCATGTGCTGCCGCAACCCTCGGTC
** *
13536604 CGGTCCGATC
699 CAATCCAATC
* * ** *
13536614 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATAAAACAAACGGGTGGGTGGGTGGGC
1 TTAGACT-GGAATGAACTCCGTATGCCTAAG-CAATCGACGAAAC-GAC------------GGGC
* * * * * * *
13536679 GGGTGGGCGGACGAACGGGCATTACGCCGGCAAGAGAGACGGGAT-CGCAAGCCGTGGATCCATA
51 ----GAGCGGGCG---GGGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATA
*
13536743 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCATCCCAATGCCATTTTTATGGCTTG
109 GGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * * * * *
13536808 TATATTCATACAATGGTCCCTCAAGCCTTGACGTTAAGTTGCATGGCAAGATGACTCGTTTTCTA
173 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
13536873 TTATTCACGATTTCCAAAACTTTTT
238 TTTTTCACGATTTTCGAAACTTTTT
13536898 GGCCCCAAAC
Statistics
Matches: 2045, Mismatches: 247, Indels: 224
0.81 0.10 0.09
Matches are distributed among these distances:
696 1 0.00
697 55 0.03
698 250 0.12
699 69 0.03
700 189 0.09
701 13 0.01
703 7 0.00
704 13 0.01
705 1 0.00
706 25 0.01
707 22 0.01
708 7 0.00
709 16 0.01
710 77 0.04
711 44 0.02
712 64 0.03
713 56 0.03
714 288 0.14
715 68 0.03
716 7 0.00
717 4 0.00
718 9 0.00
719 56 0.03
720 290 0.14
721 20 0.01
722 186 0.09
723 36 0.02
726 3 0.00
729 4 0.00
730 2 0.00
733 49 0.02
734 114 0.06
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
TTAGACTGGAATGAACTCCGTATGCCTAAGCAATCGACGAAACGACGGGCGAGCGGGCGGGGCAC
TACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTT
TTACAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTCGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGACACACCCCCCCGACCCCCCGATCGTCA
GAACACCCAATGTCGTCGGTCAGGTTCTACATGCCGAGATGGTGCCCCGGTGAAGAAAAATACGG
ACCAGCAACATATCGCCGAGGTAGCATGTGCTGCCGCAACCCTCGGTCCAATCCAATC
Found at i:13538570 original size:722 final size:714
Alignment explanation
Indices: 13536894--13538888 Score: 2629
Period size: 722 Copynumber: 2.8 Consensus size: 714
13536884 TTCCAAAACT
* * * *
13536894 TTTTGGCCCCAAACTTGGTGGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
* *
13536959 TAAAAACTCGAAGTGTACAAGATTTTCTGATCC-TTCGAAAAAAGTGTCCCCATTTCAGACACTT
66 TAAAAACTCGAAGTGTACAAGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
13537023 TAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAG
130 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
13537087 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
195 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
* * ** * * * *
13537152 CACACACCCCCCAGCCCCCCGATCCCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACAATGC
260 CACAC-CCACCCGGCCCCCCGATCGTCGAAACCC-AATGCCGTCGATCAGGTTCTCTGACGATGC
* * * * * *
13537217 TCCGACGATGGTGCCTCGGCGTAGAAAAATGTGACACCAGCACATGTCCGAGCCCAGCATGTGCT
323 TCCG-CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * ** * *
13537282 GCCGCAACTCTCAGTCCAATCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGA
387 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GA
* * * * * *
13537347 GGAAAC-ATGCGGGCGGGCAGGC-AC---AACT-C-C-AGCCAGAGAGACGGGATGCGCAAGTCG
451 CGAAACGA-GCGGGCGGGCGGGCGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
13537404 TGGATCAATAGGGTGGTACGTGGGTTTAGGCACATCTTCTTATCTCTGCATGCCAATGCCATTTT
515 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
13537469 TATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
580 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** **
13537534 CATTTTGTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCAGGATTTTTTAAAATTTTTTCGGA
645 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGGA
13537599 AGGAG
710 AGGAG
* * *
13537604 TTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAAC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
13537669 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAA-TGTCCCCATTTCAGACACTT
66 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTT
* * * * *
13537733 TAATGGCTATTGGCAACACACCTGTAAAATCTCAAATGCT-TTTCAGGGGGGTGTGAGTTCTCAA
130 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGA
* * * *
13537797 GGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACATATCATGCGC
194 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* *
13537862 GCACACCCACCTCGGCCCCCTCGATCGTCGAAACCCTAATCCCGTCGATCAGGTTCTCTGAAGAT
259 GCACACCCACC-CGGCCCCC-CGATCGTCGAAACCC-AATGCCGTCGATCAGGTTCTCTGACGAT
* *
13537927 GCTCTTGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCATCATGTG
321 GCTC-CGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * *
13537992 CTGCCGCAACCCTCGGTCCGGTCTAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACC
385 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACG
*
13538057 ATCGAAACGAGCGGGCGGGCGGGCGGTCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGC
450 A-CGAAACGAGCGGGCGGGCGGGCGG-CGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
* * ** ** *
13538122 CGTGGATCGATAGGG-GTTAGGTGGGTTTAGGGACATCTTTTTATTTCTGTGTGCCATTGCCATT
513 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
13538186 TTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACATGA
578 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
13538251 CTCGTTTTCTACTTTTCACGATTTTCAAAACTTTATGCTGTTCAGGATTGTTTAAAAGTTTTTTT
643 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAA-TTTTTTC
13538316 GGAAGGAG
707 GGAAGGAG
* * *
13538324 TTTTGGCCCCAAGCTTGGAAAACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAAATTCA
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC--AAAAAAAAATTCA
*
13538389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACT
64 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
13538454 TTAATGGCTACTGACAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
129 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
** *
13538519 ATTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGC
194 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * * * * **
13538584 GCACACCCACCCCGGCCCCCTCAATTGCCGGAACCCCAATCCCGTCGATCAGGTTCTCTGGTGAT
259 GCACACCCA-CCCGGCCCCC-CGATCGTC-GAAACCCAATGCCGTCGATCAGGTTCTCTGACGAT
** *
13538649 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
321 GCTCC-GCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
13538714 CTACCGCAACACTCGATCCGGTCCGATCTTAGACTGGGACTGAACTCCG-ATGCCTAAGCCAACC
385 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C
* * *
13538778 AACGAAACGAGTC-GACGGGGGGGCGGGCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAA
449 GACGAAACGAG-CGGGCGGGCGGGC-GGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAA
* * * *
13538841 GCCGCGGATCAATAGGGTCGTAGGTGGGTTTAGGCACATTTTC-TATTT
511 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
13538889 TTCATGATTT
Statistics
Matches: 1130, Mismatches: 125, Indels: 49
0.87 0.10 0.04
Matches are distributed among these distances:
709 5 0.00
710 155 0.14
711 94 0.08
712 163 0.14
713 2 0.00
714 1 0.00
717 3 0.00
718 1 0.00
719 151 0.13
720 98 0.09
721 88 0.08
722 358 0.32
723 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
ACACCCACCCGGCCCCCCGATCGTCGAAACCCAATGCCGTCGATCAGGTTCTCTGACGATGCTCC
GCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAA
CGAGCGGGCGGGCGGGCGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
Found at i:13539385 original size:26 final size:26
Alignment explanation
Indices: 13539349--13539421 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
13539339 AACCCTCGAT
*
13539349 CTGGGAATGAACTCCATATGCTTAGA
1 CTGGGAATGAACTCCGTATGCTTAGA
*
13539375 CTGGGAATGAACTCTGTATGCTTAGA
1 CTGGGAATGAACTCCGTATGCTTAGA
13539401 CTGGGAATGAACTCCGTATGC
1 CTGGGAATGAACTCCGTATGC
13539422 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (26 bp):
CTGGGAATGAACTCCGTATGCTTAGA
Found at i:13540270 original size:26 final size:26
Alignment explanation
Indices: 13540234--13540286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13540224 CTGGTCCAAT
* *
13540234 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13540260 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13540286 C
1 C
13540287 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13541874 original size:26 final size:26
Alignment explanation
Indices: 13541844--13541896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13541834 CCAGTTCGAT
* *
13541844 CTTAGAGTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13541870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13541896 C
1 C
13541897 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13543647 original size:26 final size:26
Alignment explanation
Indices: 13543618--13543670 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13543608 CCAACCTGAT
* *
13543618 CTTAGATTGGGAATCAGCTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
13543644 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
13543670 C
1 C
13543671 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:13544996 original size:909 final size:896
Alignment explanation
Indices: 13541116--13550155 Score: 10761
Period size: 897 Copynumber: 10.1 Consensus size: 896
13541106 TGTGGTACCA
* * * *
13541116 CAACCCTTGGTTTGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTACGCCAACCGAC-AA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
13541180 A--A-----TGAGTC-GACGGGCGGGCACTACGTCGGCCAAAGAGACAGGATGCGCAAGCCGTGG
66 ACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*** * *
13541237 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGTCAATGCCATGTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
13541302 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * *
13541367 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTCTTCGGAAG
261 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTT-TTTGGAAG
* * *
13541431 GAGGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCGTGCAC-AAAAAATT-
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
13541494 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
13541559 TTTAACGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
13541624 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** **
13541689 CGCACACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATG
585 CGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * * * *
13541754 CTCCAGTGATGGTGCCC-GACGAAGAAAAATGTGGCACTAGCACATGCCCGGGCCCAGCATGTGC
649 CTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
13541818 TGTCGTAACCCTCAGTCCAGTTCGATCTTAGAGTGGGAATGAAGTCCGTATGCTTAGACTGGGAA
714 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACT-GG---G-A-T-CATATGCTTAGACTGGGAA
* * * *
13541883 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTAAGCCAACCAGAGGGGC
772 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGC
* * * *
13541948 AGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTG-CTGATCCTGCTACCG
837 GGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCG
* * * * ** *
13542008 GAACCCAT-GATTTGGTCTAATCTTAGACTGGGAATGAACTCTATATGCCAAAGCCAACCGACGA
1 CAACCC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
13542072 AACGAGCGGGCGA-ACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
65 AACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
** * *
13542136 GATCGATAGGGTGGTAGGTGGGTTTATTCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
13542201 TGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
13542265 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAA
260 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTT-GGAA
* * *
13542329 GGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGTATGCATAAAAACAAT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AAT
13542394 T-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
388 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
13542458 ACTTTAATGGCTACTGGTAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
13542523 CAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
13542588 TGCGCACACCCCCCCGGCCGCCTCGATCGCCGAAACCCCAATGCCATCGGTCAGGCTCTCCAATG
583 TGCGCACA-CCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* ** * **
13542653 TTGCTTTGGCGATGGTGGCCC-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCGAAGCAT
646 ATGCTCCGGCGATGGT-GCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
**
13542717 GTGCTGTTGCAA-CC-C--T----T--GATC-----C--GG-TC-TGAT-CTTAGACTGGGAATG
710 GTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGATCAT-ATGCTTAGACTGGGAATG
* *
13542762 AACTCTGTATGCCTAAGTCAACCCACCAAACGAGCGTG-GGTGCGCTCAGCC-ACCAGAGGGGCG
774 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-GCGCTCAGCCGACCAGAGGGGCG
* * * * * **
13542825 GGATGCGTAAG-TCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGTTG
838 GGATGCGCAAGCT-GGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
** * * * *
13542884 CAACCCTAAGTCTAGTCTAATCTTAGACTGGGTATGAACTTCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
13542949 ACGAGC--G-GA--CGGACGGGCAGGCACTACGTTGGCCAGAGAGACGGGATGTGCAAGCCGTGG
66 ACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
13543009 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTACGTGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
13543074 GGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * ** *
13543139 TTTCTATTGTTCACAATTTTTGAAACTTTTTACGGTTTGAAATTTTTTAAAATTTTTTTGGAAGG
261 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTGGAAGG
* *
13543204 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTA
326 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
13543269 GCTAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTAT-AGACA
391 GCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACA
* * *
13543333 CTTTAATGGCTACTAG-AGCAAACCTGTAAAATTTCAAATGCTCTTTAAGAGGGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
13543397 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * * *
13543462 GCGCACACCCCCCCGTTCCCCCGATCGTCGAAACCCCAATGCCGCCGATCAGGTTCTCCGATGAT
584 GCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * * * * *
13543527 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCATATGGCCGAGCCCAGTAT-TA
648 GCTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* ** * *
13543591 CTGCCGTAACCCTCAATCCA-ACCTGATCTTAGATTGGGAATCAGCTCCGTATGCTTAGACTGGG
713 CTGCCGCAACCCTCGGTCCAGTCC-GATCTTAGACTGGG-ATCA------TATGCTTAGACTGGG
* * *
13543655 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGGG
770 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGG
* * * * * * ** * *
13543720 GCGGGATGCGTAAGCCGAGGATC-AACGGGGTCCCCCTCTACATGCTACCGATCTTGCTGCCA
835 GCGGGATGCGCAAGCTGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
*
13543782 CAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** * * * * *
13543847 AAGAGCGGGCG-GGCATGCGGGCGGGCACTACGCCAGCCAGAGAGACGAGATGCGAAAGCTGTGG
66 ACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
13543911 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
** * *
13543976 TACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTCGAGTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * * * *
13544041 TTTCTATTTTTCATGATTTTTGAAACTTTTCGCAGTTCGAGATTTTTAAAAAATTTTTTGGATGG
261 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTGGAAGG
* * * * *
13544106 -GTTTTTGGCCTCAAACTTGGTAGATGTGAGCCTTGTATTTTTTTTGGCATGCACATAAAAATTC
326 AG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
13544170 AGCTAAAAACTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
13544235 TTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTGG
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
13544300 AGGTCTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATTGCACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
13544365 C-CACACCCCCCGGCCCACCCGATCGCCAGAACCCCAATGCCGTCGTTCAGGTTCTCCGACGATG
585 CGCACACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* ** * *
13544429 CTCCGACGATGGTGCCCGGACGAAGAAAAATGTAGCACCAGCACATGCTCGAGCCCAGCATCTGC
649 CTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
13544494 TGCCGCAACCCTCGGTCCGGTCCAATCTTATACTGGGACTCAATATGCTTAGACTAGGAATGAAC
714 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGA-TC-ATATGCTTAGACTGGGAATGAAC
* * * *
13544559 TCCGTATGCCTAAGTCAAACCACGAAACAAGCATGCGGGCGCTCAACCGACCAGAGGGGCGGGAT
777 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
* * * * * * * *
13544624 GCGCAAGCTGGGGATCGGTCGAGTCCCCCTTTACGTGCTATCAATCTTGCTACCG
842 GCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
* * * * * * *
13544679 TAACCCTTGGTCTAGTCTGATCATAGACTGGGAATGAACTCCATCTGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
13544744 ACGAGTGGGCGGGCGGGCAGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGC
66 ACGA----GCGGGC--G-AGGCGGGCGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGC
* * ** *
13544809 GCAAGCCGTGGATCGATAGGGTGATAGGTGCGTTT-GATTACATCTTCATATTTCTACATGCCAA
120 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTGCATGCCAA
13544873 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
184 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
13544938 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAACA
249 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAA
*** * *
13545003 TTTTTCACAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCA
314 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
13545068 CAAAAAAATTCAGCTAAAAACTTGATGTGTAAAAGATTTTGTTACCATTTGAAAAAAGTGTCCCA
379 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
13545133 ATTTTAGACACTTTAATGGCTACTAGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
444 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * ** * *
13545198 GTGCGTTCTCGATGTTTGATGAGGGATAGGGGGTGAATATAAAGGTCAAGTACCAGCACCCATCG
509 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
13545263 CACATCATGTGCACACACACCCCCCGGCCCCATCGATCGTCGGAACCCTAATGCCGTCGGTCAGG
574 CACATCATGTG--CGCACACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
** ** * *
13545328 TTCTCCGGTGATGCTCCAACGATGCTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCC-A
636 TTCTCCGACGATGCTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
** ** * *
13545392 GGCCCAGCATGTGCTGCCATAACCCTCGGTCTGGTCGGATCTTAAACTTGGAATGAACTCCATAT
701 -GCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGAC-TGG---G-A-T-CATAT
* *
13545457 GCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
758 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
13545522 CC-AGCCAGAGGGGCGGGATGCGCAAG-TCGGGTATCGATCGGGTCCCCCTCTACGTGCTGTCAA
823 CCGA-CCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGA
* *
13545585 TACTGCTGCTG
886 TCCTGCTGCCG
* * ** * * ** *
13545596 CAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCGTAAGCCAATTGATGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** *
13545661 ACGAGCGGGC-A--------GGAAGGCACTACG-CTGGCCAGAGAGATGGGATGCGCAAGCCGTG
66 ACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
13545716 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCTAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
13545781 TGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTTG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * *
13545846 TTTTCTATTTTTCATGATTTTTGAAACTTTCTACATTTCGGGATTTTTTAAAATTTTTTTCGAAG
260 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTGGAAG
* * *
13545911 GTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
13545976 AGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAGAGTGTCCCTATTTAAGACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
13546041 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGTTGTTTAAGGGGGTGTGAGTTCTCA
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
13546106 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCACACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
13546171 CGCACACCCCCTTCAGACCCCCCGATCGCCGAAACCCCAATACCATCGGTCAGGTTCTCCGACGA
585 CGCACACCCCC--C-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * *
13546236 TGCTCCGGTGATGGTGCCCCGACAAAGAAAAATACGGCACCAGTACATGCCCGAGCCCAGCATGT
647 TGCTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*** * * *
13546301 GCTTATGTAACCCTCAGTTCAGTCCGATC-T----T---A-C--A--C--A-A---GGAATGAAC
712 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGATCATATGCTTAGACTGGGAATGAAC
* * * * * **
13546347 TCCGTATGCCTGAGTCAAACCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAAGAT
777 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
* * * * * * * *
13546412 GCGCAAGAC-GGGGATCGGTTGGGTCCCCCACTGTGCGCTGTTGATCCTACTGCCA
842 GCGCAAG-CTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
* * **
13546467 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACTGACGAC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC---CGAC
* * * *
13546532 ATGAGCGAGCGAGCGGGCG-GGCGGGCTGGCGGGCACTACATCGGCCAGAGAGACGGGATGTGCA
63 --GA---AACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
13546596 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTGCATGCCAATGCC
123 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
13546661 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
188 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
13546726 CGACTCGTTTTCAATTTTTCAAGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTT
253 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTT
** * * **
13546790 TTCCTAAGGATTTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTTACA
318 TT-GGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
13546854 AAAAAATTCAGCTAAAAACTCAAATTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCAT
381 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
13546919 TTTAGATACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGT
446 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
13546984 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCAAATATAATGGCCAAGTACCAGCACCCATCGCA
511 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
13547049 CATCATGTGCGAACACCCCCCCGGCACCCCCGATCGTCGGAACCCCATTGCCGCCGGACAGGTTC
576 CATCATGTGCGCACA-CCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* ** * * ** * * *
13547114 TACGGTGATGCTCTGACGATGGTGCCCCCATGAAGAAAAGTGTGGCACCAGCACATGCCCGAGCC
639 TCCGACGATGCTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
13547179 CAGCATGTGCTGCTGCAACCCTCGGTCCA----G----T---C------CA-AT-CTTAGACTGG
704 CAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGATCATATGCTTAGACTGG
* *** * * * *
13547225 TAATGAACTCCGTATGCCTAAGTCAATAAACAAAACGAGCGTGCAGGCTCTCAGCC-ATTCAGAG
769 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAG
* ** * * **
13547289 GGGCAGGATGCATAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCG
833 GGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
* * ** * *
13547353 TAACCCTCAGTC-GAAACTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCTAACCGACGA
1 CAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** *
13547417 AACGAGCGGGCG-GGCGAGCGGGTAGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTG
65 AACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
13547481 GATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGACAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
13547546 TGGCTTGTAAATTCATACAATGGTCCCTGAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * * * *
13547611 TTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTTGAGATTTTTTAAAAATTTTTCGGAAG
260 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTGGAAG
* * **
13547676 GAGTTTTGGCCCTAAAATTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
325 GAGTTTTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
13547741 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTAAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
13547806 CTTTAATGGCTACCGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * * *
13547871 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATTGAATATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
13547936 GCGCACACCCCGCCGGGCCCCCCGATCGTCGGAACCCCAATCCCGTCGGTCCGGTTCTCCGACGA
584 GCGCACACCCC-CC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
*
13548001 TGCTCCGGCGATGGTGCCCTGG-CGAAG--AAATGCGGCACCAGCAATATGCCCGAG-CCAGCAT
647 TGCTCCGGCGATGGTGCCC-GGACGAAGAAAAATGCGGCACCAGC-ACATGCCCGAGCCCAGCAT
* *
13548062 GTGCTGCTCGCAACCCTTGGTCCAGTCC-ATCTTAGACTGGGATGAATTTGGTATGCTTAGACTG
710 GTGCTGC-CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAT-CA-----TATGCTTAGACTG
** * * * *
13548126 GGACAATGAACTCTATATGACTAAGTCAAACCCCACGGACCAGCGA-CGTGCCGGCGGTCAGTCG
768 GG--AATGAACTCCGTATGCCTAAGTC-AA-CCCAC-GA--AACGAGCGTGCGGGCGCTCAG-C-
* * *** * *
13548190 GGCCCAGATAAGCGGGATGCACAAGAC-GGGGATCTATCGGGTCCCCCTCTGCGTGCTGTCGATC
824 CGACCAGAGGGGCGGGATGCGCAAG-CTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATC
* *
13548254 CTGCTACCA
888 CTGCTGCCG
* * * * ** * * * * *
13548263 TAACCCTCGATTTGATCCAATCTTAGACTAGGAATGAACTTCGTATGACTAAGCCAACCTATGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
13548328 ACAAGCGGGCG-GGCGGGTGGGCGGGCACTACGTCAGCCAGAGAGACGGAATGCGCAAGCCCTGG
66 ACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
13548392 ATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * *
13548457 GGCTTGTAATTTCATACAATGGTTCCATAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
13548522 TTTCTATTTTTCATGATTTTGGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTCGAAAGG
261 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTGGAAGG
* * *
13548587 ACTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
326 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
13548652 GCAAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGT-CCACCCTTTTCAGACAC
391 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCCATTTCAGACAC
* * * *
13548716 TTTAATGGCTACTAGTAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
13548781 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
13548846 CGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAAGGTCCCT-GGTCAGGTTCTCCGTCGA
585 CGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATG-CCGTCGGTCAGGTTCTCCGACGA
* * * *
13548910 CGCTCCGGCGATGGTGCCCAGG-CGAAGAAAAATGCGACACCAGCACATACCCGAGCCTAGCATG
647 TGCTCCGGCGATGGTGCCC-GGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
13548974 TGCTGTCGTAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCCTATGCTTAGATTGG
711 TGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACT-GG---G-A-T-CATATGCTTAGACTGG
* *
13549039 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
769 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGG
* * * * *
13549104 GGCGGGATGCGCAAGCCGGTGATCGATTGGGTCCCCCTTTGCGTGCTGTCGATCCTACTGCCG
834 GGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
** * * * *
13549167 CAACCCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAACCAACGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
13549232 ATGAGCGGGCG-GGCGGTCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGG
66 ACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
13549296 ATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
13549361 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * *
13549426 TTTCTATTTTTCACGATTTTTGAAACTTTTTGTGATTTGGGATTTTTT-AAAATTTTTTCGGAAG
261 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTT-GGAAG
* **
13549490 GAGTTTTGGCCCCAAACTTGGTAGAGGTGATCCTTGTACCTTTGTTGGCATGCAC-AAAAAATTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
13549554 AGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTTAGACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
13549619 TTTAATGGTTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTAG
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
13549684 AGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** * *
13549749 GGCACACCCCCGCCCGTCCCCCCCGATCGCCAAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
585 CGCACA--CCC-CCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * *
13549814 ATGCTCCGGCGATGGTGCACCGG-TGAAGAAAAATGCAGCATCAGCACATGTCCGAGCCCAGCAT
646 ATGCTCCGGCGATGGTGC-CCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
13549878 GTGCTGCCGCAACCCTCGGTCCA----G-TC-----C---G-----AT-CTTAGACTGGGAATGA
710 GTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGATCATATGCTTAGACTGGGAATGA
* * * * *
13549924 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTGCGGGCGCTTAGCCGGCCAGAGGGGCAGG
775 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGG
* * * * ** ** *
13549989 ATGCGTAAGCTGGGGATCGACCGGGTCCCCTTCTACGTGCTACCGATCCTATTACCG
840 ATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
* ** * ** * * * *
13550046 TAACCCTTCATTC-GGT-TCGATCTTAGGCTATGAATGAACTCCCTTTGCCTAAGCCAATCGATG
1 CAACCC-TCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
13550109 AAATGAGCAGGC-AGGTGGGCGGACGGGCACTACGCCGGCCAGAGAGA
64 AAACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
13550156 GGACTCGTTT
Statistics
Matches: 7046, Mismatches: 889, Indels: 439
0.84 0.11 0.05
Matches are distributed among these distances:
871 164 0.02
872 260 0.04
873 234 0.03
874 85 0.01
875 4 0.00
876 121 0.02
877 95 0.01
878 260 0.04
879 519 0.07
880 11 0.00
881 7 0.00
882 3 0.00
883 5 0.00
884 1 0.00
885 6 0.00
886 270 0.04
887 440 0.06
888 16 0.00
890 2 0.00
891 1 0.00
892 52 0.01
893 8 0.00
895 14 0.00
896 4 0.00
897 801 0.11
898 130 0.02
899 108 0.02
900 183 0.03
901 379 0.05
902 480 0.07
903 259 0.04
904 412 0.06
905 131 0.02
906 17 0.00
907 3 0.00
908 21 0.00
909 741 0.11
910 404 0.06
911 41 0.01
912 153 0.02
913 9 0.00
915 1 0.00
916 4 0.00
917 186 0.03
918 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
CCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGATCATATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGC
AAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
Found at i:13545470 original size:26 final size:26
Alignment explanation
Indices: 13545432--13545484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13545422 CTGGTCGGAT
*
13545432 CTTAAACTTGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
13545458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
13545484 C
1 C
13545485 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:13549039 original size:26 final size:26
Alignment explanation
Indices: 13549003--13549055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13548993 CCAGTCTGAT
13549003 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
13549029 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
13549055 C
1 C
13549056 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:13550693 original size:26 final size:26
Alignment explanation
Indices: 13550664--13550716 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13550654 CCGGTCCAAT
13550664 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
13550690 CTTAGATTGGGAATGGACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13550716 C
1 C
13550717 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13551449 original size:25 final size:25
Alignment explanation
Indices: 13551408--13551458 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
13551398 CGGAACCCCA
*
13551408 ATGCTGCCGGTCAGGTTCTCCGACG
1 ATGCTGCCGGTCAGGTTCCCCGACG
*
13551433 ATGCT-CCGGTGATGGTTCCCCGACG
1 ATGCTGCCGGTCA-GGTTCCCCGACG
13551458 A
1 A
13551459 AAAAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.14, C:0.31, G:0.31, T:0.24
Consensus pattern (25 bp):
ATGCTGCCGGTCAGGTTCCCCGACG
Found at i:13551557 original size:26 final size:26
Alignment explanation
Indices: 13551528--13551580 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13551518 TCGGTCCGAT
13551528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13551554 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13551580 C
1 C
13551581 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13552440 original size:25 final size:26
Alignment explanation
Indices: 13552412--13552463 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13552402 CTGGTCCGAT
13552412 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13552437 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13552463 C
1 C
13552464 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13553338 original size:26 final size:26
Alignment explanation
Indices: 13553309--13553361 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13553299 TTCGTCCGAT
*
13553309 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13553335 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13553361 C
1 C
13553362 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13554234 original size:26 final size:26
Alignment explanation
Indices: 13554198--13554250 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13554188 CTAATTCGAT
13554198 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
13554224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
13554250 C
1 C
13554251 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13555126 original size:26 final size:26
Alignment explanation
Indices: 13555097--13555149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13555087 CTGGTCCGAT
13555097 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* * *
13555123 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13555149 C
1 C
13555150 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13555603 original size:903 final size:900
Alignment explanation
Indices: 13550734--13556084 Score: 7167
Period size: 899 Copynumber: 6.0 Consensus size: 900
13550724 AACCCACAAC
* ** * * **
13550734 CCGGGGACCGG-CTGGGTCCCCCTCTACATGCTGCCGATCTTGCTGTCGCA-AAGCTCAATCTGG
1 CCGGGGATCGGTC-GGGTCCCCCTCTATGTGCTGCCGATCCTGCTG-C-CACAACCTTGATCTGG
* * * * *
13550797 TCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGAGGAAACGAGCGGGTGGGCG
63 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-
* *
13550862 GGCGAACGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTG
127 GG-G--C--GCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
13550927 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATT
187 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
* *
13550992 CATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
252 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* **
13551057 ACGATTTTTGAAACTTTTTGA-GGTTCGGGTTTTTTTTAAAA-TTTTTTGGAAGGTGTTTTGGCC
317 ACGATTTTTGAAACTTTTT-ACGGTTCGGG-ATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGCC
* ** * *
13551120 TCAAACATT-GTAGATATGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAAC
380 CCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
13551184 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGT
444 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
13551249 ACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATG
509 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
13551314 AGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
574 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * *
13551379 CCCCGGCCGCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGGTG
638 CCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCG
* * * * * * *
13551444 ATGGTTCCCCGACGAAAAAAAAATGCAGCACCAGCACATGCCCTACCCCAGCATTTGCTGTCGCA
702 ATGGTGCCCCGACG-AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
*
13551509 ACCCTCGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACT
766 ACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* ** * **
13551573 CCGTATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGTGCTCAGCCGGTAAGAAGGGTGGGAT
830 CCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
*
13551637 GCACAAG
894 GCGCAAG
* * * *
13551644 CC----A-------GGTCCCCCTCTGTGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCTGGTC
1 CCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCACAACCTTGA-TCTGGTC
* * * * *
13551698 TGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGCGGACGGGCGGA
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
13551763 CAGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGT
130 C--GCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
13551828 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATCCCATTTTTATGGCTTGTAAATTCATACA
193 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
13551893 ATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACCATTCGTTTTTTATTTTT--C-A--
258 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
13551953 ----AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCTCCAAACTT
323 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTT
* * *
13552014 GATAGACGTGATCCTTGTAATTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACT-GAAAGTG
388 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTG
* * * *
13552078 TAGAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTAGCAG
452 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
13552143 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAG
517 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
13552208 GGGGCCAATATAAGGGCCAAGTACCAGTC-CCCATCGCACATCATGTGCGCACACCCCCCCGGCC
582 GGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * * * *
13552272 CGCCCGATCGTCGGAACACCAATGCCGTCGATCAGGTTCTCCGGCGACGCTCTGACGATGGTGCC
646 C-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * *
13552337 CCGTCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGAT
710 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT
13552402 CTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
775 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
13552466 AAGTCAACCCA-TAATACTAGCGTACGGGCACTCAGCCGGTCAGAGGGGCGGGATGTGCAAG
840 AAGTCAACCCACGAA-ACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* * * * * *
13552527 CCTGGGATCGGTTGGGTCCCCCTCTATGTGCT-CTCAATCCTGCTGCCCCAACCCTTAATCCGGT
1 CCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGC-CGATCCTGCTGCCACAA-CCTTGATCTGGT
* *
13552591 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC-G
64 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
13552655 G-GCGGGCACTAAGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTG
129 GCGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
13552719 GGTTTAGGCACATCTTCATATTTCTCCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
194 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
13552784 TGGTCCCTTAAGCCATCCCGTCAAGTTTTATGGCGAGACGACTCGTTTTCTATTTTTCACGATTT
259 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * * *
13552849 TTGAAACTTTATACGATTCGGGATTTTTTAAAATGTTTTTGGAAGGATTTTTGGCCCTAGACTTG
324 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTTG
* *
13552914 GTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTA
389 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
13552979 CAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCA
454 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
13553044 AACCTGTAAAATCTCAAATGCTCGTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGG
519 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
13553109 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
584 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * * * *
13553174 CGATCG-CTGAACCCCAATGCTGCTGGTCAGGTTCTCCGACGATGCTTCGGCCATGGTGCCCCGG
649 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * * * * * * * * *
13553238 TGAAGAAAAATACGGCAACAGCACATACCCAAGCCCAGCATGTGTTGCCACAACCCTCGATTTCG
714 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGG
* *
13553303 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCCAAGT
779 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * *
13553368 CAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGATGGGCAGGATGCACAAG
844 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
** * ** * ** * *
13553425 CCGGGGATCGACCGGGTCCCCCTCTATGTGTTGTTGATCCTGCTACCGTAACACTCGATCTAGTC
1 CCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCACAAC-CTTGATCTGGTC
* *
13553490 CGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC-GG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
13553554 -GCGGGCACTAAGCCGACCAGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGCAGGTGG
130 CGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
13553618 GTTTAGGCACATCATCATATATTCTCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
195 GTTTAGGCACATCTTCATAT-TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * * * *
13553683 TGGTCCCTTAAACCATCCCGTCAAGTTTTATGGCAAGACGATTCGTTTTCTATTTTTCATGATTT
259 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
13553748 TTTAAACTTTTTACGGTTCGAGATTTTTTAAAATGTTTTTGGAAGAA-TATTTGGCCCCAAACTT
324 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGAAGT-TTTGGCCCCAAACTT
* *
13553812 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGT
388 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
13553877 ACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTTAGACAGTTTAATGGCTACTGGCAGC
453 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
13553942 AAACCTGTAAAATCTCATATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
518 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
13554006 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCGGTCCC
583 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCC
** * * *
13554071 TTCAATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCT-C--CG--G-T-----GATGGTACCCC
647 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * *
13554125 GACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCT
712 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCT
** * *
13554190 AATTCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
777 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** * *
13554255 GTCAACCCACAAAACGAGCATGCGACCGCTCAGCTGGCCAGAGGGGCAGAATGCGCAAG
842 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* * * * * ** * * **
13554314 TCGAGGATC-GACTGGGTCGCCCTCTACGTGCTGCCGATCCTGCTAACACATCCCTCGATCCAGT
1 CCGGGGATCGGTC-GGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCACA-ACCTTGATCTGGT
*
13554378 CCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-G
64 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * * *
13554442 G-GCGAGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTG
129 GCGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
13554506 GGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAA
194 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
13554571 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTT
259 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** *
13554636 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAA-AGAGTTTTGGCCCTAAACTT
324 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGA-AGTTTTGGCCCCAAACTT
* * *
13554700 GGTAGACGTGATGCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGT
388 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
13554765 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGC
453 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
13554830 AAACATGAAAAATCTCAAATGCTCTTAAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
518 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
13554895 GGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCACACCCCTCTGGCCCC
583 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * * * *
13554960 CCGATCGCCAGAACCCCAATGCCGCCGGTCAGGATCTACGGCGATGCTCCAGTGATGGTGCCCCG
648 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* * * *
13555025 ACGAAGAAAAATGCGGCACTAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACACTCGGTCTG
713 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTG
* * *
13555090 GTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAG
778 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
13555155 TCAACCCACGAAACAAGCGTGCGTGCGCTCAACCGACCAGAGGGGCAGGATTCGCAAG
843 TCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* * ** *
13555213 CCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTATTGCCACAACCTTTGATCTGGTT
1 CCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCACAACC-TTGATCTGGTC
* *
13555278 CGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAAACGAGTGGGCGGGCGGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * ** * * *
13555343 CAGACGGGCATTACGTCGGGTAGAGAGACGGGATACGCAAGCCGTGGATTGATACGGTGGTAGGT
130 C-G-CGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** * * * *
13555408 ATGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTCTATGGCATGTAAATTCCTACA
193 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
13555473 ATGGTCCCTTAAGCCTTCACATGAAGTTTTATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
258 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
13555538 TTGGAAACTTTTTACAGTTCAGGATTTTTAAAAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTT
323 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTT
* * *
13555603 GGGAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGT
388 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
13555668 ACAAGATTTTGAGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGC
453 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
13555733 AAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
518 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * ** *
13555798 GGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCTCACACCCCCTAGCCCCC
583 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * *
13555863 CCGATCGCCAGAACCCCAATGCCGCCGATCAGGATCTCCGGCGATGCTCCGGCGATGGTGCCCCG
648 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* * * * *
13555928 ATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCG
713 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTG
* ** * *
13555993 ATTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATACCTAAG
778 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
13556058 CCAACCGACGAAACGAA-CGGGCGGGCG
843 TCAACCCACGAAAC-AAGCGTGCGGGCG
13556085 GGCGGGCGAG
Statistics
Matches: 3940, Mismatches: 434, Indels: 141
0.87 0.10 0.03
Matches are distributed among these distances:
882 3 0.00
883 93 0.02
884 68 0.02
885 84 0.02
886 265 0.07
887 3 0.00
888 334 0.08
889 450 0.11
890 169 0.04
891 2 0.00
892 2 0.00
893 5 0.00
894 97 0.02
895 179 0.05
897 119 0.03
898 390 0.10
899 977 0.25
900 30 0.01
902 1 0.00
903 663 0.17
904 3 0.00
906 1 0.00
910 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCACAACCTTGATCTGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
Found at i:13556029 original size:26 final size:26
Alignment explanation
Indices: 13556000--13556050 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13555990 CCGATTTGAT
13556000 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13556026 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13556051 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13556717 original size:744 final size:744
Alignment explanation
Indices: 13555282--13556817 Score: 2383
Period size: 744 Copynumber: 2.1 Consensus size: 744
13555272 CTGGTTCGAT
* **
13555282 CTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGA
* ** * * *
13555347 CGGGCATTACGTCGGGTAGAGAGACGGGATACGCAAGCCGTGGATTGATACGGTGGTAGGTATGT
66 CGAGCATTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAAGGTGGTAGGTAGGT
* *
13555412 TTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTCTATGGCATGTAAATTCCTACAATGG
131 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTCTATGGCATGTAAATTCATACAATGG
* *
13555477 TCCCTTAAGCCTTCACATGAAGTTTTATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTGG
196 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGG
* *
13555542 AAACTTTTTACAGTTCAGGATTTTTAAAAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTTGGGA
261 AAACTTTTTACAGTTCAGGATTTTTAAAAATTTTTTCGAAAGAAGTTTTGGCCCCAAACTTGGGA
13555607 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAA
* *
13555672 GATTTTGAGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
391 GATTTTGAGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
13555737 CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * * *
13555802 CAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCTCACACCCCCTAGCCCCCCCGA
521 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCCGA
* * *
13555867 TCGCCAGAACCCCAATGCCGCCGATCAGGATCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGA
586 TCACCAGAACCCCAATGCCGCCGATCAGGATCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * *
13555932 AGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGATTT
651 AGAAAAATACGGCACCAGCACATACCCGAGCCCAACATGTGCTATCGCAACCCTCGGTCCGATCT
13555997 GATCTTAGACTGGGAATGAACTCCGTATG
716 GATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13556026 CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGA
** *
13556091 CGAGCATTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
66 CGAGCATTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAAGGTGGTAGGTAGGT
* *
13556156 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTCTATGGCATGTAAATTCATACAATGG
* * * * *
13556221 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGACGACTCGTTTTGTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGG
* * * * *
13556286 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGCAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACAGTTCAGGATTTTTAAAAATTTTTTCGAAAGAAGTTTTGGCCCCAAACTTGGGA
* * * *
13556351 GACGTTATCCTTGTATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAA
* *
13556415 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAAC
391 GATTTTGAGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
13556480 CTTTAAAATCTC-AATAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGTGGGATAGGGGG
456 CTGTAAAATCTCAAAT-GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
*
13556544 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCAC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCC-C
* * * * * *
13556609 GATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCTGGC
584 GATCACCAGAACCCCAATGCCGCCGATCAGGATCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * *
13556674 GAAGAAAAATACGGCACCAGCACATGCCCTAGCCCAACATGTGCTATTGCAACCCTCGGTCCGGT
649 GAAGAAAAATACGGCACCAGCACATACCCGAGCCCAACATGTGCTATCGCAACCCTCGGTCCGAT
13556739 CTGATCTTAGACTGGGAATGAACTCCGTATG
714 CTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13556770 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
13556818 GCGTGTGGGT
Statistics
Matches: 715, Mismatches: 75, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
742 3 0.00
743 216 0.30
744 496 0.69
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (744 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGA
CGAGCATTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAAGGTGGTAGGTAGGT
TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTCTATGGCATGTAAATTCATACAATGG
TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGG
AAACTTTTTACAGTTCAGGATTTTTAAAAATTTTTTCGAAAGAAGTTTTGGCCCCAAACTTGGGA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAA
GATTTTGAGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCCGA
TCACCAGAACCCCAATGCCGCCGATCAGGATCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
AGAAAAATACGGCACCAGCACATACCCGAGCCCAACATGTGCTATCGCAACCCTCGGTCCGATCT
GATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13556773 original size:26 final size:26
Alignment explanation
Indices: 13556744--13556796 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13556734 CCGGTCTGAT
*
13556744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
13556770 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
13556796 C
1 C
13556797 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13557664 original size:26 final size:26
Alignment explanation
Indices: 13557635--13557687 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13557625 CCGGTCTGAT
13557635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13557661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13557687 C
1 C
13557688 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13557747 original size:891 final size:890
Alignment explanation
Indices: 13556026--13571264 Score: 16771
Period size: 891 Copynumber: 17.2 Consensus size: 890
13556016 ACTCCGTATG
* * * *
13556026 CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * *
13556091 CGAGCATTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
66 CG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
13556156 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
13556221 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGACGACTCGTTTTGTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
13556286 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGCAGTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
13556351 GACGTTATCCTTGTATTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
325 GACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
13556416 ATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
13556481 TTTAAAATCTC-AATAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGTGGGATAGGGGGC
455 TGTAAAATCTCAAAT-GCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
13556545 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCACG
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCC-CG
** * * *
13556610 ATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCTGGCG
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCG
* * * ***
13556675 AAGAAAAATACGGCACCAGCACATGCCCTAGCCCAACATGTGCTATTGCAACCCTCGGTCCGGTC
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
13556740 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCA
713 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
13556805 ACCCATGAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGGGGCGAGATGCGTAAGCTGGGGATCG
778 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCG
*
13556870 ACCGGGTCCCCCTCTGCGTGCTGCT-GCAACCCTCAGTCTGGTCCGAT
843 ACCGGGTCCCCCTCTGCGTGCTGCTCGCAACCCTCAGTCTGGTCTGAT
* *
13556917 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGACGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * *
13556982 CGAGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTGGAT
66 CG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
**
13557047 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
13557112 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGACGACTCGTTTTGTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
13557177 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGCAGTTTTGGCCCCAAACTTGCTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
13557242 GACGTTATCCTTGTATTTTTTTGGCATGCATAAAAATATTCAGCTAAAAACTCGAAGTGTACAAG
325 GACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
13557307 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGG-ATGCAAAC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA-GCAAAC
* * * *
13557371 CTTTAAAATCTC-AATAGCTCGTTAAAGGGGTGTGAGTTCTCGAGCTTTGATAAGGGATAGGGGG
454 CTGTAAAATCTCAAAT-GCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
**
13557435 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTTCGCCCCCCAC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCC-C
** ** * *
13557500 GATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCTCTGGC
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
* * * ** *
13557565 GAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTATCGCAACGCTCGGTCCGGT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
13557630 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
712 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** *
13557695 AACCCATGAAACGAGCGTGTAGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGTAAGCTGGGGATC
777 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATC
* *
13557760 GACCGGGTCCCCCTTTGCGTGCTGCT-GCAACCCTCAGTCTGGTCCGAT
842 GACCGGGTCCCCCTCTGCGTGCTGCTCGCAACCCTCAGTCTGGTCTGAT
* *
13557808 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGC---AGGA-GGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * *
13557869 CGG----GCG--GGCCAGAGAGACGAGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTT
66 CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
13557928 TAGGCACATCTTCATATTTCTGTGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
13557993 CCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** * * * *
13558058 AGGTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGG-CCCAAACTTGTTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
13558122 ATGTGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
326 ACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * **
13558187 ATTTTATGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATTGCTACTGGCAATAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
13558252 TATAAAATCTCAAATGCTCTTTCAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
** *
13558317 AATATAAGGGCCAAGTACCAGCACCCATC-CAACATCATGTGCGCACACCCCCTGGTCCCCCCGA
520 AATATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATGTGCGCACACCCCCCCGCCCCCCCGA
* * **
13558381 TCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCCCGATG
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGGCG
* * * * * *
13558445 AAGAAAAATGTGGCACTAGCATATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTT
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
13558510 TGATGTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
713 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * * * * *
13558575 ACCCACGAAACGAACGTGCAGGCACTCAGCCAGCCAGAGGGGC-AGGATGAGGAAGCCGAGGATC
778 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCTGGGGATC
** * * *
13558639 GGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCAGGTCTGAT
842 GACCGGGTCCCCCTCTGCGTGCT---G---CT-C-G-C--AACCCTCAGTCTGGTCTGAT
* *
13558699 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGACGGG
** * *
13558764 CGGGCAGGCGGGCACTACACCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGT
62 C--G--GGC-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
13558829 AGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
122 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
**
13558894 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGTGACTCGTTTTCTATTTTTCAT
187 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * *
13558959 GATTTTTGAAACTTTTTACGGTTCGGG-TTTTTTTATATTTTCTCAGATGGAGTTTT-GCCCCAA
252 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
13559022 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
317 ACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * * *
13559087 GTGTACAAGATTTTTTGACCATTCGAAAACAGTGTCCCCATTTCATATACTTTAATGGCTACTGG
381 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
13559152 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCA-TTCTTGAGGTTTGATGAGGG
446 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG-AGTTCTCGAGGTTTGATGAGGG
* * *
13559216 ATAGGGGGCCAATATATGGGCCAAGAACCAGCACCCATCGCACAT-ATGTGCGCACA-CCCCCGG
510 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * *
13559279 CCCCCCCGATCATCGG-ACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCC-AGCGATGGT
575 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGT
** * * *
13559342 GCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTC
639 GCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * *
13559407 GGTCCGG-CTTGATCTTAGATTGGGAATGAAGTCCATATGCTTAGATTGGGAATGAACTCTGTAT
704 GGTCCGGTC-TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * *
13559471 GCCTAAGTCAACCCACAAAATGAGCGTGTGGGTGCTCAGTCGGCCAAAGGGTCGGGATGCACAAG
768 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAG
** * * * *
13559536 CCAGGGATCGACTGGGTCCCCCTCTGGGTACTGTCGATCTTGCTACCGCAACCGT-TGGCTCGGT
833 CTGGGGATCGACCGGGTCCCCCTCT--G--C-GT-G--C-TGCT--CGCAACCCTCAGTCT-GGT
**
13559600 CCAAT
886 CTGAT
** * * ** *
13559605 CTTAGACTGAAAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGAACGGACGGGAGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * * *
13559670 TGGGCACTATGCCGGCCAGAGAGATGGGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 -CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
13559735 TTAGGCACATCTTCATATTTTTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
13559800 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
13559865 AAACGTTTTACGGTTCGAGATTTTTTAAAAGTTTTTCGGAAGGAGTTTTGG---C---CTTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * **
13559924 GACATGATCCTTGTGTTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCTTAGTGTACAA
325 GACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
13559988 CATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
13560053 CTGTAAAATCTCAAAAGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * * *
13560118 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACACACACCTCCTCGATCCCCTCG
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCCG
* * * * *
13560183 ATCGTCGGAAGCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGACG
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCG
* * **
13560248 AAGAAAAATACGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGTTGCAA----C---CC--TC
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
13560304 TG-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCGAAGTCA
713 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * **
13560352 ACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCAGGGATCG
778 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCG
** * * * * *
13560417 GTCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCACAACCATCGGTCTAGTTTGAT
843 ACCGGGTCCCCCTCTGCGTGC--T-G---CT-C-G---CAACCCTCAGTCTGGTCTGAT
* * *
13560476 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGC-GA---GCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
** *
13560537 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
66 C-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
13560602 TTCAGGCACATCTTCATATTTCTGCAT-CCACT-CCATTTTTTATGGGGC-TGTAAATTCATACA
130 TT-AGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTTTTAT--GGCTTGTAAATTCATACA
* * *
13560664 ATGGGTGCCCTCTAAGCCCTTCACATGAAGTTTCCATAGCAAGACGACTCGTTTTTTATTTTTCA
191 AT-GGT-CCCT-TAAG-CCTTCACGTGAAGTTT-CATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
13560729 TGATTTTTGAAACTTTTTACCGTTCGGGA-TGTTTAAAATTTTTTTGGAAGGAGTTTTGGCACCA
251 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC-CCC
* * * * *
13560793 AAACTTGCTCGAACCATGATCCTTGTATTTTGTTGGCAATGCCATACAAAAAATTCAGCTAAAAA
315 AAACTTGGTAG-A-CGTGATCCTTGTATTTTTTTGGC-ATG-CACA-AAAAAATTCAGCTAAAAA
* * *
13560858 CTCGAAGTGGTACAAGATTTTGGGACCATTTGAAAAAATTGTCCACATTTCAGACACTTTAATGG
375 CTCGAAGT-GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
13560923 CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGA
439 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGA
* *
13560988 TGAGGGAAAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
504 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * **
13561052 CCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGGT
569 CCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * * * * * *
13561117 GATGGTGCCTCAGTGAATAATAATGCGGCACCAGCACATGCCCAAGCCTAGCATGTGCTGTCGCA
633 GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
** ** *
13561182 ACCCTCGGTGTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTC
698 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
13561247 CGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCGGGATGC
763 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGC
* * * * * *
13561312 GTAAGTTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCAATCCTACAACCGCAACCATCGGTC
828 GCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTG----C--TGCT-----CGCAACCCTCAGTC
13561377 TGGTCTGAT
882 TGGTCTGAT
* * * *
13561386 CTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGATGAAACGAAC--G-GG-TGGGC--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * *
13561445 -GGCACTACG-CTGGCCAGAGAGACGGGATGCGTAAGCCAG-GAATCGATAGGGTGGTCGGTAGG
66 CGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGGTGGG
* * * * *
13561507 TTTAGCCACATCTTCATATTTTTGCATGCCAATGACATTTTTGTGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
13561572 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTTTATTTTTCATAATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* ** * *
13561637 GAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGGCCCAAACTTGGT
259 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
13561702 AGACGTGATCCTTGTATTTTTGTTGGCACGC-CTCAAAACATTCAGTTAAAAACTCGAAGTGTAC
324 AGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
13561766 AAGATTTTGTGACTATTTGAGAAAAGTGTCCCCATTTCAAACACCTTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
** * * * * *
13561831 ACCTGTAAAATCTCAAATGCTCTTTATGGGGGAGTGAGCTCTCAAGGTTTGATGACGGATGGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
13561896 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCCGGACCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GCCCCCC
* * * ** *
13561961 TGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTAGGCGATGCTCC-AGCGATGGTGCCCCG
581 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCG
* * ** *
13562025 ACGAAGAAAAAT-TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAACAACCCTCAGTCCG
645 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * *
13562089 ATCCT-ATCTTAGACTGGGAATGAAGTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
710 GT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
13562153 GTCAACCCACGAAACGAGTGTACGGGTGCTCAGCCAGCCAGAGGGGCGAGATGCGAAAGCTGGGG
774 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGG
* * *
13562218 ATC-AGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTTAGTCCGGTCTGAT
839 ATCGA-CCGGGT-CCCC-CT-C-TGC-GT-G---CTGCT--CGCAACCCTCAGTCTGGTCTGAT
** *
13562281 CTTAGACTGGGAATGAACTCCGTATAACTAAGCCAACCGATGAAACGA--------ACGGGC---
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * **
13562335 AGGCACTACGTCGGCCAGAGAGTCGGGATGAACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
13562400 TAGGCACATCTTAATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * *
13562465 CCCTTAAGCCTTCACGTAAAGATTCATGGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * **
13562530 AACTTTTTACGGTTC-TGATTTTTTAAAATTTTTTCGAAAATAGTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
13562594 ACGTGATCCTTGTATTTTTGTTGGCATTCAAAAAAAAATTCATCCAAAAACTCGAAGTGTACAAG
326 ACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
13562659 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * ** *
13562724 AGTAAAATCTCAAATGCTCTTT-AAGGTGGTGTGAGTTCTTGACGTTGGCCGAGGGATAAGGGGC
455 TGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
13562788 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAAACCCCCCCGGCCCCCCCG
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GCCCCCCCG
* * * ** **
13562853 ATCGCCGAAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATG
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCG
** ** * *
13562918 AAGAAAAATATGGCACCAGCACATGCCCGAGCTGAGCATGTGCTACCGTAA-CC-C--T-C---C
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
13562975 --A--TT----T-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
713 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * * *
13563022 ACCCATGAAACAAGCCTGCGGGCGCTCAGTCGCGCCAGAGGGGCGAAACGCACAAG-TCGGGGAC
778 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCG-GCCAGAGGGGCGAGATGCGCAAGCT-GGGGAT
** *
13563086 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCTGGTCTGAT
841 CGACCGGGTCCCCCTCTGC--G-T---G---CTGC--TCGCAACCCTCAGTCTGGTCTGAT
* * *
13563147 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAATGAGCGGACGGGTGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C-GA---GCGGGCGGA
*
13563212 CGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
58 CGGGCGGGCG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
13563277 AGGTGGGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCA
122 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
13563342 TATAATGGTCCCTTGAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCAT
187 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * *
13563407 GATTTTTTAAACTTTTTACGGTTCGGGATATTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAA
252 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
13563472 ACTTGGTAGATGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCTGCTAAACACTC-AA
317 ACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
13563536 GGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAGTTTAATGGCTATTG
381 -GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
13563601 GTAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
445 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
13563666 AAAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
510 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-
* * *
13563731 GCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTGCTCCGGCGATGCTCC-AGCGATGG
574 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGG
** * ** * * *
13563795 TGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCATAGAATGTGCTACTGCAA-CC-
638 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
13563858 C--T-CAGTCTGGTC-----C----AAT---CT---TA-GC-T----TGGGAATGAACTTCGTAT
703 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** *
13563899 GCCTAAGTCAACACATGAAACGAGCGTGCGGACGCTCAGCCGGCCAAAGGGAG-G-GATGCGCAA
768 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG-GCGAGATGCGCAA
** * * **
13563962 GCTGGGGATCGAAAGGGTCCACCTCTGTGTGCTACCGATCCTACTGCCGCAACCCTC-GATCCAG
832 GCTGGGGATCGACCGGGTCCCCCTCTGCGTGCT---G------CT--CGCAACCCTCAG-TCTGG
*
13564026 TCCGAT
885 TCTGAT
* * * * * ** *
13564032 CTTAGACTAGGAATGAACTCCATATGCCCAAGCCAATCGACGGAACGAGCAAGCGGGCGGGC--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * * * * * *
13564095 -GGCACTACATCGTCCAGAGAGACGGGATGCGCAAGCTGTGTATTGTTAGGGTGGTAGGTTGCTT
66 CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
13564159 TAGGCATATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATATAATGGT
131 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * **
13564224 CCCTTAAGCCTTCACGTGAATTTTCATGGCGAGACGAGTCGTTTTCTATTTTTCATGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** * * *
13564289 AACTTTTTACGGTTCAAGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAC
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
13564354 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAAG
326 ACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
13564419 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * * * * **
13564484 TATAAAATATCAAATGCTCTTT-TAGAGGTGTGAGTTCTCAAGGTTTGGTGAAGGATAGGATGCC
455 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
13564548 AATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGAT
** * * * * *
13564613 CACCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAA
585 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAA
* * * *
13564678 GAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCGGTCCG
650 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
* * *
13564743 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTAGGAATGAACTCCGTATGCCAAAGTCAAC
715 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *** *
13564808 CCACAAAACCAGCGTGCGGGCGCTCAGCCGGTCATAGGGGCGGGATGCGAAAG-TCAAAGATCGG
780 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCT-GGGGATCGA
* * * * * * *
13564872 CTGGTTCCCTCTCTGGGTGCT-ATCGCAACCCTCTGT-TCGGTCTAAT
844 CCGGGTCCCCCTCTGCGTGCTGCTCGCAACCCTCAGTCT-GGTCTGAT
* * * *
13564918 CTTAGACTGGGAATGAACTCCGTATGCCGAAACCAACCGACG-AA--A-CGTGTGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * * *
13564979 CAGGCACTGCATCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
66 C-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * **
13565044 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATTTCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
13565109 TCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** * ** * *
13565174 AAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTTCCCCAGACCTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
13565239 GAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
13565304 GATTTTGGGACCATTTAAAAAAATTGTCCACATTTCAGACACTTTAATGGCTACT-G--G--AA-
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
13565363 --G--------CAAA--C-CTATAAA--------A--TCTCGAGGTTTGATAAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * * **
13565405 CAATATAAAGGCCAAGTACCAGCAACCATCACACATCATGTGCACACA-CCCCCTGGTCCCCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGA
* * * * * * *
13565469 TCATCGGAACCCCAATGCCGTC-GTTAGATTCTCCGATGATGCTCTGACGATGGTGCCCCAGCGA
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGA
* * * * ** ** * *
13565533 AGAAAAATGCGACACCAGCACCTGCCCGAGCCTAGCATGTGCCGTTGCAACCCTCAATCAGGTCC
649 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
** * * *
13565598 GATCTTAGACTGGGAATGAACTCTATATGCTTAGACTAGGAATGAACTCTGTATGCCAAAGTCAA
714 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** ** *
13565663 CCCATGAAATGAGCATGCGAATGCTCAGCCGGCCAGAGGGGCGAGATGCATAAGCCGGGGATCGA
779 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGA
** * * *
13565728 AAGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTTACT-TCGGTCTGAT
844 CCGGGTCCCCCTCTGCGTGCT---G------CT--CGCAACCCTCAGTCT-GGTCTGAT
* * ** *
13565786 CTTAGACTGGGAATGAAATCCGTATGCCTAAGCCAACCGAGGAAACGAGCAAGCGGGA-GGACGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGACGGGCGG
* *
13565850 GCGGGCACTACGTCGGCCAGAGAGACGGGATACGGAAGCCGTGGATCGATAGGGTGGTAGGTGGG
65 GC-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
13565915 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
13565980 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
13566045 GAAACTTTTTACGGTTTGGTATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCTCGAAA-TTGG
259 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CCAAACTTGG
* * **
13566109 TAAACATGATCCTTGTATTTTTTTGATATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACA
323 TAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
13566173 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
13566238 CCTGTAAAATCTTAAATGCTCTTTAAAGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
13566303 CCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACAGCCCCCCGGCCCACCT
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGCCCCCCC
* * * * * *
13566368 GATCATCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCTGGA
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
* * * *
13566433 GAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
** * *
13566498 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTC
712 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
13566563 AACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATC
777 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATC
* * * * *
13566628 GATCGGGTCTTCCTCTACATGCTGCCAATCCTGCTACCACAACCCTC-GATCTGGTCAGAT
842 GACCGGGTC--CC-C--C-T-CTG-C-GTGCTGCT--CGCAACCCTCAG-TCTGGTCTGAT
* *
13566688 CTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCAGG-CGTGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGACGGGCGG
* * * ** * * *
13566752 GTGGGTACTATGTCGGTGAGAGAGACGGGATGCGAAAGTCAT-GATCGATAGGGTGGTAGGTGGG
65 G-CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
13566816 TTTAGGCAAATCTTCATATTTCTACGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
13566881 GTCACTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC---A-TTTC
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * *
13566942 AAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAATGAGTTTTAGCCCCAAACTTGGT
259 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
13567007 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAATCTCAAAGTGTACA
324 AGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* ** *
13567072 AGATTTTGTGACCATTTGAAAAAAATGTGACCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
13567137 CCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * ** *
13567202 CCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTTCACACACCCCCCCGGTCCCCCA
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCG
* * * * * * *
13567267 ATCGTCGAAACCCTAATGCCACCGATCAAGTTCTCCGACGATGCTCCGACGATCGTGCCCCGGTG
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCG
* * * *
13567332 AAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAA-CC-C--T-C-G--
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
13567389 -G-TC-----C--GG--T----T-CG-AT-CTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCA
713 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
13567436 ACCCACGAAACAAGCGCGTGGGCGCTCAGCCGGCCAAAGGGGCG-GCATGCGCATG-TCGAGGAA
778 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAG-ATGCGCAAGCT-G-GGGA
* * * * * ***
13567499 TAG-TCGGATCCCCCTCTGTGTCCTGGCGATCCTGTTGCCGTAACCCTC-GATCCAATCTGAT
840 TCGACCGGGTCCCCCTCTGCGTGCT-GC--T-C----G-C--AACCCTCAG-TCTGGTCTGAT
* * *
13567560 CTTAGACTGGCAATGAACTCCGTTTGCCTAAGCCAACCGACGATACGAGCGGGC--A--GGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* ** * * * *
13567621 CGGGCACTACGCCGGCCAGAGAGGTGGGATCCGCAGGCTGTGGATTGATAGGGTGGTAGGTGGGT
66 C-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
13567686 TTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
13567751 ACCCTTAAG----C-C--G-A----C-T-----------T-GTTTTTTATTTTTCATGATTTTCG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
*** * *
13567791 AAA-TCTTTTACGGTTCAATATTTTTTAAACTTTTTTCGGAAGGAGTTTTCGCCCCAAACTTGGT
260 AAACT-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
13567855 AGACCTGATGCTTGTGTTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAA-T-GCAAGTGTAC
324 AGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTAC
*
13567918 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
13567983 ACCTGTAAAATCTCAAATGCTCTTT-AAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * *
13568047 GGCCAATATAAGGGCCAAGTACCAGCACCCATTGAACATCATGTGTGCACA-CCCCCTGACCCCT
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCC
* * * * * * *
13568111 CGATCATCGGAACCCCAACGCCACCAGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCAG
581 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
* ** *
13568176 TGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA-CC-C--T-C-G
646 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
*
13568235 ---G-TC-----C-----A-G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGT
711 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
13568280 CAACCCACGAAACGAGCGTGCGGGTGGTCAGCCGGCCAGAGGGGTGAGATGCGCAAGGC-GGGGA
776 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAA-GCTGGGGA
* * * * * *
13568344 TCGATCGGGACCCCATCTGTGTGCTACCAATCCTGCTGCTGCAACCCTCAGTCCGATCTGAT
840 TCGACCGGGTCCCCCTCTGCGTG---------CTGCT-C-GCAACCCTCAGTCTGGTCTGAT
* * * * * *
13568406 CTTAGACTAGGAATGAACTCCGTACGTCTAAGCCAACCGACAAAACGAGC---CGG-CGGGCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* ** **
13568467 CGGGTACTAC-TCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGAA
66 C-GGCACTACGT-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** *
13568530 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTACAGCTTGTAAATTCATATAATG
129 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
13568595 GTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * *
13568660 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGT
259 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
13568725 ATACGTGATCCTTGTATTTTTGTCGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACA
324 AGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
13568790 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
13568855 CTTGTAAAATCTCAAATGCACTTT-AAGTGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAAGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
13568919 GCCAATATAAGGGCC-AGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCGGCCCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCC
* * * * ** ** *
13568983 GATCGTCGGAACCCCAATGCCACCGATTAGGATCTCCGGTGATGCTCCGGTGATGGTGCCCTGGC
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
* * * *
13569048 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGCAACCCTCGATCTGGT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * * * *
13569113 CTGATCTTGGA-TGGGGAGTGCACTACGTATGCTTAGACTAGGAATGAACTCCGTTTGCCTAAGT
712 CTGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** ** * * * *
13569177 CAACCCACGAAACGAGCGTACGGACGCTCAATCGACCAGAGGGGTGGGATGTGCAAG-TCGGGGA
776 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCT-GGGGA
* * *
13569241 TCGACCGGGTCCCCCTTTGCATGTTGTCGATTTGACAGCCACAACCCTCAGTCTGGTCTGAT
840 TCGACCGGGTCCCCCTCTGC--G-TG-C----TG-C--TCGCAACCCTCAGTCTGGTCTGAT
* * * * ** *
13569303 CTTACACTTGGAATGAACTCTGTATGCTTAAGCCAGTCGACGAAACGAGTGGGC--A--GGC--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* *
13569362 -GGCACTACGTCGGCTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
13569426 TAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
13569491 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * *
13569556 AACTTTTTACGGTTCGGGATTTTTTATAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
13569621 ATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAAG
326 ACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
13569686 ATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
13569751 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
13569816 AATATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCACAGCCCCCCTGGCCCCTCCG
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-CGCCCCCCCG
* *** *
13569881 ATCGTCGAAACCCCAATGCTATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCG
* * * *
13569946 AAGAAAAATGCGGAACCAGCACATGCTCGAGCCCAGCATATGCTGCCGTAA-CC-C--T-C-G--
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
13570003 -G----T---CT-GG--TG---T--G-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
713 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
13570050 ACCAACAAAACTG-GCGTGCGGGTGCTCAGTCAGCTAGAGGGGCGGGATGCGCAAGCCGGGGATC
778 ACCCACGAAAC-GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATC
* * * * *** *
13570114 -AGTCGAGTCCCCCTCTACGTGCTGCCGATCCTGTTGCTGCAACCCTCGGTCCAAT-TCAAT
842 GA-CCGGGTCCCCCTCTGCGTGCT---G---C---T-C-GCAACCCTCAGTCTGGTCT-GAT
* * * * *
13570174 CTTAGACTGGGAATGAACTCTGCATGCCTAACCCAACTGACGAAAC-A------AG-CGGGC--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * * * *
13570229 -GGTACTACGTCAGCCAGAGAGACGGGATGCCCAAGCCGTGGATTGATAGTGCGGTAGGTGGGTT
66 CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
13570293 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
13570358 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * **
13570423 AAATTTTTGCTGCTT-GAAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AACTTTTTAC-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* ** *
13570487 GACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTTGCTAAAAACTCGAAGCGTACAA
325 GACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
13570552 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGATACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
** * *
13570617 CCATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGC
454 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
13570682 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--TA----CGC-CCCCCCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGA
* * * * ** *
13570740 TCGTCGGAACCCTAATG-CGACCGGTAAAGTTCTCTGGTGATGCTCCGATGATGGTGCCCCAGG-
584 TCGTCGGAACCCCAATGCCG-CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GGC
* * * * **
13570803 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCCCAGTCCAAT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
13570868 CCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGG-ATGAACTCCGTATGCCGAAGTT
712 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * ** * *
13570932 AACCCACGAAACAAGCGTGCGGGTGCTCAACCGGATAAAAAAGGGCGAGATGCGCAAG-TCGGGG
777 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGG--CCAGAGGGGCGAGATGCGCAAGCT-GGGG
* * **
13570996 ATCGACCGAGTCCCCCTATGCATGCTGTCGATGCTGCTATCGCAACACTCAGTCTGGTCCAAT
839 ATCGACCGGGT-CCCC----C-T-CTG-CG-TGCTGC--TCGCAACCCTCAGTCTGGTCTGAT
* * * * * * *
13571059 CTTAGACTGGGAATCAACTTCGTATGCCTAAGCCAACTGACGAAATGAGTGGGCGGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
** * * * *
13571124 CGGGCACTTTGCCGGCC-GAAGAGACGGAATGCGCAAGCTGTGGATCAATAGGGTGGTAGGTGGG
66 C-GGCACTACGTCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
13571188 TTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
13571253 GTCCCTTAAGCC
194 GTCCCTTAAGCC
13571265 AGAACCCTAA
Statistics
Matches: 12316, Mismatches: 1504, Indels: 1050
0.83 0.10 0.07
Matches are distributed among these distances:
843 1 0.00
844 13 0.00
845 87 0.01
846 326 0.03
847 177 0.01
848 105 0.01
849 3 0.00
850 1 0.00
852 3 0.00
853 1 0.00
854 2 0.00
855 2 0.00
856 212 0.02
857 35 0.00
858 168 0.01
859 3 0.00
860 3 0.00
861 1 0.00
862 5 0.00
863 10 0.00
864 7 0.00
865 73 0.01
866 106 0.01
867 546 0.04
868 139 0.01
869 104 0.01
870 256 0.02
871 697 0.06
872 537 0.04
873 439 0.04
874 9 0.00
875 10 0.00
876 10 0.00
877 13 0.00
878 5 0.00
879 281 0.02
880 444 0.04
881 32 0.00
882 25 0.00
883 53 0.00
884 152 0.01
885 343 0.03
886 599 0.05
887 447 0.04
888 18 0.00
889 11 0.00
890 339 0.03
891 1194 0.10
892 15 0.00
893 240 0.02
894 430 0.03
895 444 0.04
896 134 0.01
897 629 0.05
898 370 0.03
899 304 0.02
900 73 0.01
901 215 0.02
902 332 0.03
903 8 0.00
904 10 0.00
905 43 0.00
906 349 0.03
907 23 0.00
908 24 0.00
909 248 0.02
910 364 0.03
911 5 0.00
912 2 0.00
913 1 0.00
914 5 0.00
915 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGACC
GGGTCCCCCTCTGCGTGCTGCTCGCAACCCTCAGTCTGGTCTGAT
Found at i:13558551 original size:26 final size:26
Alignment explanation
Indices: 13558515--13558566 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13558505 TGGTTTGATG
13558515 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13558541 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13558567 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13561237 original size:26 final size:26
Alignment explanation
Indices: 13561201--13561253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13561191 GTGGTCCAAT
13561201 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13561227 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13561253 C
1 C
13561254 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13562126 original size:26 final size:26
Alignment explanation
Indices: 13562096--13562148 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13562086 CCGATCCTAT
*
13562096 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13562122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13562148 C
1 C
13562149 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13564774 original size:26 final size:26
Alignment explanation
Indices: 13564745--13564797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13564735 CCGGTCCGAT
*
13564745 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13564771 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13564797 C
1 C
13564798 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13565639 original size:26 final size:26
Alignment explanation
Indices: 13565601--13565653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13565591 CAGGTCCGAT
*
13565601 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
*
13565627 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
13565653 C
1 C
13565654 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:13566541 original size:26 final size:26
Alignment explanation
Indices: 13566503--13566555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13566493 CTGGTCCAAT
*
13566503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13566529 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13566555 C
1 C
13566556 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13570921 original size:25 final size:26
Alignment explanation
Indices: 13570873--13570924 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13570863 CCAATCCGAT
*
13570873 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13570899 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13570924 C
1 C
13570925 CGAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13572245 original size:59 final size:59
Alignment explanation
Indices: 13572075--13572663 Score: 707
Period size: 59 Copynumber: 9.9 Consensus size: 59
13572065 TTTTGTTAAG
* * *
13572075 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTCTTGAAATTTTAATTTC-GA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTCTAA
*
13572133 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TA----TTTTTTTTGAAAATTTATTTCTAA
*
13572198 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
* *
13572257 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGGAAATTTAGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT--ATTTCT-AA
* *** *
13572316 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
* * *
13572373 GGAAAATTGATACTTTCGACTTTTCCCCAAAAATA-TTTTTTGGAAATTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTCT-AA
* * * * *
13572432 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAAATTTTTTTTTTTGAAATTTTGTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC--CAAAAA-TATTTTTTTTGAAAATTTATTTCTAA
**
13572494 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTTAATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAA-TTT-ATTTCT-AA
*
13572555 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
*
13572612 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTTGAAAATTT
13572664 TTATTTTTAT
Statistics
Matches: 468, Mismatches: 33, Indels: 58
0.84 0.06 0.10
Matches are distributed among these distances:
57 96 0.21
58 43 0.09
59 155 0.33
60 31 0.07
61 43 0.09
62 32 0.07
63 17 0.04
64 5 0.01
65 46 0.10
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
Found at i:13572387 original size:116 final size:114
Alignment explanation
Indices: 13572075--13572652 Score: 721
Period size: 116 Copynumber: 4.9 Consensus size: 114
13572065 TTTTGTTAAG
* **
13572075 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTGAAATTTTAATTTCGAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTT-TTGAAA-TTTATTTTTAAGGAAAAT
13572140 TGATACTTTCAACTTTT-CCTCAAAAATTTATTTTTTTTTTTTGAAAATTT-A-TTTCTAA
64 TGATACTTTCAACTTTTCCCT-AAAAA--TA------TTTTTTGAAAATTTAATTTTC-AA
**
13572198 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTG-AAATTTATTTTTAAGGAAAA
*
13572263 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTAGATTTTCAA
63 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTA-ATTTTCAA
* **
13572316 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGAAATTTATTTTTAAGGAAAATT
* * * *
13572381 GATACTTTCGACTTTTCCCCAAAAATATTTTTTGGAAATTTTGATTTTCAA
65 GATACTTTCAACTTTTCCCTAAAAATATTTTTT-GAAAATTTAATTTTCAA
* * *
13572432 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAAATTTTTTTTTTTGAAATTTTGTTTTTAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCC--CAAAAA---TATTTTTTGAAA-TTTATTTTTAAGGA
*
13572497 AAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTTAATTTTCAA
60 AAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGAAAA-TTTAATTTTCAA
*
13572555 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT-GAAATTTATTTTTAAGGAAAATT
13572620 GATACTTTCAACTTTTCCCTAAAAATATTTTTT
65 GATACTTTCAACTTTTCCCTAAAAATATTTTTT
13572653 TTTGAAAATT
Statistics
Matches: 407, Mismatches: 30, Indels: 43
0.85 0.06 0.09
Matches are distributed among these distances:
116 104 0.26
117 13 0.03
118 90 0.22
119 8 0.02
120 10 0.02
121 47 0.12
122 6 0.01
123 79 0.19
124 40 0.10
125 10 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (114 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAATTTATTTTTAAGGAAAATTG
ATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTAATTTTCAA
Found at i:13572659 original size:298 final size:296
Alignment explanation
Indices: 13572070--13572644 Score: 910
Period size: 298 Copynumber: 1.9 Consensus size: 296
13572060 TTTTTTTTTG
*
13572070 TTAAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTGAAATTTTAATTTCGAGG
1 TTAAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTGAAATTTTAATTTCAAGG
*
13572135 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTTTTTTGAAAATTTATTTCTAAGG
66 AAAATTGATACTTTCAACTTTTCCTCAAAAA--TAATTTTTTTTTTTGAAAATTTATTTCTAAGG
13572200 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCCAAGGAAAATT
129 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCCAAGGAAAATT
*
13572265 GATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTAGATTTTCAAGGAAAATTGATACT
194 GATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTA-ATTTTCAAGGAAAATTGATACT
*
13572330 TTCAACTTTTCCTCAAAAACCCTTTTTTGAAATTTATTT
258 TTCAACTTTTCCTAAAAAACCCTTTTTTGAAATTTATTT
* *
13572369 TTAA-GGAAAATTGATACTTTCGACTTTTCCCCAAAAATATTTT-TTGGAAATTTTGATTTTCAA
1 TTAAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTT-GAAATTTT-AATTTCAA
* * *
13572432 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAA-AATTTTTTTTTTTGAAATTTTGTTTTTAAG
64 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATAATTTTTTTTTTTGAAAATTTATTTCTAAG
** *
13572495 GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTTAATTTTCAAGGAAA
128 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAA-TTT-ATTTCCAAGGAAA
13572560 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTT-A-TTTCTAAGGAAAATTGAT
191 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTAATTTTC-AAGGAAAATTGAT
13572623 ACTTTCAACTTTTCCCTAAAAA
255 ACTTTCAACTTTT-CCTAAAAA
13572645 TATTTTTTTT
Statistics
Matches: 257, Mismatches: 12, Indels: 16
0.90 0.04 0.06
Matches are distributed among these distances:
295 4 0.02
296 98 0.38
297 12 0.05
298 102 0.40
299 41 0.16
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.44
Consensus pattern (296 bp):
TTAAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTGAAATTTTAATTTCAAGG
AAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTTTTTTTGAAAATTTATTTCTAAGGAA
AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCCAAGGAAAATTGA
TACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTAATTTTCAAGGAAAATTGATACTTTC
AACTTTTCCTAAAAAACCCTTTTTTGAAATTTATTT
Found at i:13572757 original size:1 final size:1
Alignment explanation
Indices: 13572723--13572776 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
13572713 TCTAATAAAT
* * * * * *
13572723 AAAAAATAAAATAAACAAATAAACAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13572777 CCTGGAGCGG
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.89, C:0.04, G:0.02, T:0.06
Consensus pattern (1 bp):
A
Found at i:13573132 original size:20 final size:20
Alignment explanation
Indices: 13573104--13573155 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
13573094 CACCGGTGGG
*
13573104 ATTTCGCCGGATTCTGG-AA
1 ATTTCGCCGGAATCTGGAAA
13573123 ATTCTCGCCGGAATCTGGAAA
1 ATT-TCGCCGGAATCTGGAAA
13573144 ATTTCGCCGGAA
1 ATTTCGCCGGAA
13573156 GTTCGCCGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 3 0.10
20 22 0.73
21 5 0.17
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (20 bp):
ATTTCGCCGGAATCTGGAAA
Found at i:13573162 original size:11 final size:11
Alignment explanation
Indices: 13573146--13573185 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
13573136 TCTGGAAAAT
13573146 TTCGCCGGAAG
1 TTCGCCGGAAG
13573157 TTCGCCGGAAG
1 TTCGCCGGAAG
*
13573168 TT-GCCGAAAG
1 TTCGCCGGAAG
*
13573178 ATCGCCGG
1 TTCGCCGG
13573186 TTTCTGGGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.20, C:0.28, G:0.35, T:0.17
Consensus pattern (11 bp):
TTCGCCGGAAG
Found at i:13573326 original size:25 final size:25
Alignment explanation
Indices: 13573279--13573332 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
13573269 AATCTGGAAA
*
13573279 TTTCCCAGAAATTTCCAGAAAATTT
1 TTTCCCAAAAATTTCCAGAAAATTT
*
13573304 TTTCGCCAAAAATTTCTAG-AAATTT
1 TTTC-CCAAAAATTTCCAGAAAATTT
13573329 TTTC
1 TTTC
13573333 TCACTCCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (25 bp):
TTTCCCAAAAATTTCCAGAAAATTT
Found at i:13573690 original size:3 final size:3
Alignment explanation
Indices: 13573682--13573707 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
13573672 GATAATTAAA
13573682 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
13573708 AAAATAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:13573750 original size:3 final size:3
Alignment explanation
Indices: 13573744--13573860 Score: 66
Period size: 3 Copynumber: 37.3 Consensus size: 3
13573734 TACAAAAAAA
13573744 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT ATAT AACT ATAT ACAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT A-AT AA-T A-AT A-AT
* * *
13573791 -AT AA- ATCT AAT -CT AAT AA- AAA AAT AAAT AAAT ATAT ACAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT -AAT A-AT A-AT AAT
13573834 AAT AAT AAT AAT AA- AAT ACAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT A
13573861 CAAAAGAAGA
Statistics
Matches: 93, Mismatches: 7, Indels: 28
0.73 0.05 0.22
Matches are distributed among these distances:
2 10 0.11
3 53 0.57
4 29 0.31
5 1 0.01
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:13574046 original size:6 final size:6
Alignment explanation
Indices: 13574035--13574075 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
13574025 TCAACTCAAC
*
13574035 ATTTTT ATTTTT GA-TTTT -TTTTT ATTTTT GTTTTT ATTTTT
1 ATTTTT ATTTTT -ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
13574076 TTTGATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
5 4 0.13
6 25 0.83
7 1 0.03
ACGTcount: A:0.12, C:0.00, G:0.05, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:13574053 original size:1 final size:1
Alignment explanation
Indices: 13574049--13574147 Score: 81
Period size: 1 Copynumber: 99.0 Consensus size: 1
13574039 TTATTTTTGA
* * * ** ** ** *
13574049 TTTTTTTTTATTTTTGTTTTTATTTTTTTTGATTTTTTTGATTTTTTTGATTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
13574114 GTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
13574148 GGCCGAAGCT
Statistics
Matches: 75, Mismatches: 23, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 75 1.00
ACGTcount: A:0.05, C:0.00, G:0.08, T:0.87
Consensus pattern (1 bp):
T
Found at i:13574058 original size:17 final size:16
Alignment explanation
Indices: 13574036--13574148 Score: 120
Period size: 17 Copynumber: 6.8 Consensus size: 16
13574026 CAACTCAACA
*
13574036 TTTTTATTTTTGATTT
1 TTTTTTTTTTTGATTT
13574052 TTTTTTATTTTTG-TTT
1 TTTTTT-TTTTTGATTT
*
13574068 TTATTTTTTTTGATTT
1 TTTTTTTTTTTGATTT
13574084 TTTTGATTTTTTTGATTT
1 TTTT--TTTTTTTGATTT
*
13574102 TTTTGTTTTTTTGTTTT
1 TTTT-TTTTTTTGATTT
**
13574119 TTTGTTTTTTTTTTTGTT
1 TTT-TTTTTTTTGAT-TT
13574137 TTTTTTTTTTTG
1 TTTTTTTTTTTG
13574149 GCCGAAGCTC
Statistics
Matches: 84, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
15 6 0.07
16 19 0.23
17 37 0.44
18 22 0.26
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTTTGATTT
Found at i:13574325 original size:83 final size:80
Alignment explanation
Indices: 13574155--13574719 Score: 807
Period size: 83 Copynumber: 6.9 Consensus size: 80
13574145 TTTGGCCGAA
* * *
13574155 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATTGCTCCTCTAAACAGAGGCAACGG
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAAC-G
*
13574219 ACTTTGGAAAGTAAATT
64 ACTTTGAAAAGTAAATT
* * *
13574236 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAAATAAATTGCTCCTCTCAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCA--AC
13574301 GACTTTGAAAAGTAAATT
63 GACTTTGAAAAGTAAATT
* *
13574319 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATTGCTCCTCTCAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCA--AC
13574384 GACTTTGAAAAGTAAATT
63 GACTTTGAAAAGTAAATT
13574402 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACG-
13574465 ACTTTGAAAAGTAAATT
64 ACTTTGAAAAGTAAATT
13574482 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACG-
* *
13574545 ACTTGGAAAAATAAATT
64 ACTTTGAAAAGTAAATT
*
13574562 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA--ACG
*
13574627 ACTTTGGAAAAATAAATT
64 ACTTT-GAAAAGTAAATT
* *
13574645 GCTCCTCTCAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCTCCTCTAAATAGAGGCAACGA
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACG-
13574710 ACTTTGAAAA
64 ACTTTGAAAA
13574720 AATAAATACT
Statistics
Matches: 456, Mismatches: 15, Indels: 25
0.92 0.03 0.05
Matches are distributed among these distances:
79 3 0.01
80 116 0.25
81 91 0.20
82 47 0.10
83 164 0.36
84 35 0.08
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.22
Consensus pattern (80 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAC
TTTGAAAAGTAAATT
Found at i:13574732 original size:40 final size:40
Alignment explanation
Indices: 13574155--13574719 Score: 784
Period size: 40 Copynumber: 13.8 Consensus size: 40
13574145 TTTGGCCGAA
* *
13574155 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCAC-ACGAC-TTTGAAAAGTAAATT
*
13574196 GCTCCTCTAAACAGAGGCA-ACGGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACAC-GACTTTGAAAAGTAAATT
* *
13574236 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTT-GAAAAGTAAATT
*
13574278 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAGTAAATT
*
13574319 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTT-GAAAAGTAAATT
*
13574361 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAGTAAATT
13574402 GCTCCTCTAAACAGAGGCA-ACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAGTAAATT
13574442 GCTCCTCTAAACAGAGGCA-ACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAGTAAATT
13574482 GCTCCTCTAAACAGAGGCA-ACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAGTAAATT
* *
13574522 GCTCCTCTAAACAGAGGCA-ACGAACTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAGTAAATT
*
13574562 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAGTAAATT
*
13574603 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTT-GAAAAGTAAATT
*
13574645 GCTCCTCTCAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGAC-TTTGAAAAGTAAATT
*
13574687 GCTCCTCTAAATAGAGGCA-ACGAACTTTGAAAA
1 GCTCCTCTAAACAGAGGCACACG-ACTTTGAAAA
13574720 AATAAATACT
Statistics
Matches: 490, Mismatches: 22, Indels: 25
0.91 0.04 0.05
Matches are distributed among these distances:
39 9 0.02
40 195 0.40
41 136 0.28
42 147 0.30
43 3 0.01
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.22
Consensus pattern (40 bp):
GCTCCTCTAAACAGAGGCACACGACTTTGAAAAGTAAATT
Found at i:13575969 original size:8 final size:8
Alignment explanation
Indices: 13575956--13575986 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
13575946 TTCGGATCTC
13575956 TTTTTTCA
1 TTTTTTCA
13575964 TTTTTTCA
1 TTTTTTCA
*
13575972 TTTTCTCA
1 TTTTTTCA
13575980 TTTTTTC
1 TTTTTTC
13575987 TTCTTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.16, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTCA
Found at i:13576418 original size:1 final size:1
Alignment explanation
Indices: 13576412--13576439 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
13576402 CCTTTTGTGG
13576412 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
13576440 CAAAAATTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:13578741 original size:15 final size:15
Alignment explanation
Indices: 13578721--13578767 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
13578711 TTGTAAGTGT
13578721 AATGAATGAGAATGC
1 AATGAATGAGAATGC
*
13578736 AATGAATGAGAATGT
1 AATGAATGAGAATGC
13578751 AATGAATGAGAAATGC
1 AATGAATGAG-AATGC
13578767 A
1 A
13578768 TGTATGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 24 0.83
16 5 0.17
ACGTcount: A:0.49, C:0.04, G:0.26, T:0.21
Consensus pattern (15 bp):
AATGAATGAGAATGC
Found at i:13582113 original size:57 final size:56
Alignment explanation
Indices: 13581929--13582480 Score: 851
Period size: 57 Copynumber: 9.8 Consensus size: 56
13581919 TTTTGTTAAG
* *
13581929 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTGAAATTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAA-TTT-ATTTCAA
*
13581987 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTG-AAATTTATTTC-AA
13582047 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTATTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAATTTATTTCAA
* *
13582104 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTA-TTTCAA
* *
13582161 GGAAAATTGATACTTTCAACTTTTCCTC-AAAA-ATTTTTTTGAAATTTATTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTCAA
* *
13582215 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTGGAAATTTATTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTCAA
* *
13582270 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAATTTATTTCAA
* *
13582327 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTCAA
*
13582383 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTC-AA
*
13582439 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
13582481 TTGAAAATTT
Statistics
Matches: 463, Mismatches: 19, Indels: 25
0.91 0.04 0.05
Matches are distributed among these distances:
53 2 0.00
54 33 0.07
55 86 0.19
56 98 0.21
57 138 0.30
58 45 0.10
59 13 0.03
60 45 0.10
61 3 0.01
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTCAA
Found at i:13582304 original size:223 final size:223
Alignment explanation
Indices: 13581924--13582479 Score: 918
Period size: 223 Copynumber: 2.4 Consensus size: 223
13581914 TTTTTTTTTG
**
13581924 TTAAGGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTGAAATTTTAATTTCGAGG
1 TTAA-GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTT-TTGAAA-TTT-ATTTTAAGG
13581989 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAAATTTATTTCTAAGGAAAAT
61 AAAATTGATACTTTCAACTTTTCC-CAAAAA--TA-TTTTTTGAAAATTTATTTCTAAGGAAAAT
13582054 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTATTTCAAGGAAAATTGATACTT
122 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTATTTCAAGGAAAATTGATACTT
13582119 TCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATT
187 TCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATT
13582156 TTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTGAAATTTATTTTAAGGAAA
1 TT-AAGGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGAAATTTATTTTAAGGAAA
*
13582220 ATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAATTTATTT-TAAGGAAAATTGATACT
64 ATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGATACT
* *
13582284 TTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTAAGGAAAATTGATACTTTCAACTT
129 TTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTATTTCAAGGAAAATTGATACTTTCAACTT
*
13582349 TTCCCTAAAAATATTTTTTTGAAATTTATT
194 TTCCCTAAAAATATTTTTTGGAAATTTATT
13582379 TTAAGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAA
1 TTAAGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTT-GAAATTTATTT-TAAGGAAA
13582444 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
64 ATTGATACTTTCAACTTTTCCC-AAAAATATTTTTT
13582480 TTTGAAAATT
Statistics
Matches: 312, Mismatches: 6, Indels: 19
0.93 0.02 0.06
Matches are distributed among these distances:
221 7 0.02
222 34 0.11
223 122 0.39
224 47 0.15
225 15 0.05
227 6 0.02
228 31 0.10
229 3 0.01
230 6 0.02
231 6 0.02
232 33 0.11
233 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (223 bp):
TTAAGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTATTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGATACTTT
CAACTTTTCCCCAAAAATATTTTTTTTGAAATTTATTTCAAGGAAAATTGATACTTTCAACTTTT
CCCTAAAAATATTTTTTGGAAATTTATT
Found at i:13582584 original size:1 final size:1
Alignment explanation
Indices: 13582550--13582601 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
13582540 TCTAATAAAT
* * * * * *
13582550 AAAAAATAAAATAAACAAATAAACAAAGAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13582602 CCTGGAGCGG
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.88, C:0.04, G:0.02, T:0.06
Consensus pattern (1 bp):
A
Found at i:13582973 original size:20 final size:19
Alignment explanation
Indices: 13582923--13582974 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
13582913 ACACCGGTGG
*
13582923 ATTTCGCCGGATTCTGGAA
1 ATTTCGCCGGAATCTGGAA
13582942 ATTCTCGCCGGAATCTGGAAA
1 ATT-TCGCCGGAATCTGG-AA
*
13582963 ATTTCGTCGGAA
1 ATTTCGCCGGAA
13582975 GTTCGCCGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 3 0.10
20 21 0.72
21 5 0.17
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (19 bp):
ATTTCGCCGGAATCTGGAA
Found at i:13583524 original size:3 final size:3
Alignment explanation
Indices: 13583516--13583549 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
13583506 GATAATTAAA
13583516 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
13583550 GATAAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:13583589 original size:3 final size:3
Alignment explanation
Indices: 13583583--13583690 Score: 50
Period size: 3 Copynumber: 35.3 Consensus size: 3
13583573 AAAAAAAAAA
*
13583583 AAT AAT AAT AAT AAT AAT AAAT ATAT AACT ATAT ACAT -AT AA- ATCT
1 AAT AAT AAT AAT AAT AAT -AAT A-AT AA-T A-AT A-AT AAT AAT A-AT
* * *
13583629 AAT -CT AAT AA- AAA AAT AA- AAA AAT ATAT ACAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT
13583673 AAT AA- AAT ACAT AA- AAT A
1 AAT AAT AAT A-AT AAT AAT A
13583691 CAAAAGAAGA
Statistics
Matches: 83, Mismatches: 8, Indels: 28
0.70 0.07 0.24
Matches are distributed among these distances:
2 12 0.14
3 48 0.58
4 22 0.27
5 1 0.01
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:13584905 original size:26 final size:26
Alignment explanation
Indices: 13584876--13584928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13584866 CCCGTTCGAT
13584876 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
13584902 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13584928 C
1 C
13584929 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13586500 original size:718 final size:718
Alignment explanation
Indices: 13585132--13586535 Score: 2100
Period size: 718 Copynumber: 2.0 Consensus size: 718
13585122 CGGGCGAGCA
* *
13585132 GGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGTCGTGGATTGATAGGGTGGTAG
1 GGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*** * *
13585197 GTGGGTTTAGACACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTGATA
66 GTGGGTTTAGACACATCTTCATATTTCTACAAGCAAATGCCATTTTTATGGCTTGTAAATTCATA
* *
13585262 CAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
13585327 TTTTCGAAACATTTTACGATTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTAGCCCCAAAG
196 TTTTCAAAACATTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAAC
** ** * *
13585392 TTGGTAGATGTGATCCTTGTATTTTTGCTAGCATGCACAAAAACATTCAGCTAAAAACTCCAAGT
261 TTGAAAGACCTGATCCATGTATTTTTGCTAGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGT
*
13585457 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACGGGCA
326 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACGGGCA
* *
13585522 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTTGAGCTTTGATGAGGGATA
391 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATA
* * * *
13585587 GGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
456 GGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCAAATCATGTGCGCAAACCCCCCGGCCC
* * ** * * *
13585652 CCCCGATCGCCGGAACCCCAATGACGTCGGTCAAATTCTCCTGCGATGTTCCGGCAACGGTGCCT
521 CCCCGATCACCGAAACCCCAATGACGTCGACCAAATTCTCCTGCGATGCTCCGGCAACGATGCCC
*
13585717 CGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
586 CGACAAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
13585782 TGGTCCAATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGGCGG
651 TAGTCCAATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGGCGG
13585847 ATG
716 ATG
*
13585850 GGCGGGCGGGCACTACG-TAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGCGGGCGGGCACTACGCT-GGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
13585914 GGTGGGTTTATG-CACATCTTCATATTTCTGCAAGCAAATGCCATTTTTATGGCTTGTAAATTCA
65 GGTGGGTTTA-GACACATCTTCATATTTCTACAAGCAAATGCCATTTTTATGGCTTGTAAATTCA
*
13585978 TACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
129 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
13586043 GATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTGGCCCCA
194 GATTTTCAAAACATTTTACGATTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTAGCCCCA
* * * * **
13586107 AACTTGAAAGACCTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAAATACTTGA
258 AACTTGAAAGACCTGATCCATGTATTTTTGCTAGCATGCACAAAAAAATTCAGCTAAAAACTCCA
**
13586172 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTG
323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACGG
* * *
13586237 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
388 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGG
* * *
13586302 ATATGGGGCCAATATAAGGGCCAAGTACCAACGCCCATCGTAAATCATGTGCGCAAACCCCCCCG
453 ATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCAAATCATGTGCGCAAA-CCCCCCG
* * ** ** *
13586367 G-CCCCTCGATCACCGAAACCCCAATGCCGTCGACCAGGTTCTCC-GACGATGCTCCGGTGATGA
517 GCCCCCCCGATCACCGAAACCCCAATGACGTCGACCAAATTCTCCTG-CGATGCTCCGGCAACGA
* * *
13586430 TGCCCCGGA-AAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCT
581 TGCCCC-GACAAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCC
* *
13586494 TCGGTCTAGTCCGATCTTAGATTGGGAACGAACTCCGTATGC
645 TCGGTCTAGTCCAATCTTAGACTGGGAACGAACTCCGTATGC
13586536 TTAGACTGGG
Statistics
Matches: 612, Mismatches: 68, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
717 2 0.00
718 592 0.97
719 18 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (718 bp):
GGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGACACATCTTCATATTTCTACAAGCAAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTCAAAACATTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAAC
TTGAAAGACCTGATCCATGTATTTTTGCTAGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACGGGCA
GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCAAATCATGTGCGCAAACCCCCCGGCCC
CCCCGATCACCGAAACCCCAATGACGTCGACCAAATTCTCCTGCGATGCTCCGGCAACGATGCCC
CGACAAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
TAGTCCAATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGGCGG
ATG
Found at i:13586538 original size:26 final size:26
Alignment explanation
Indices: 13586509--13586561 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13586499 CTAGTCCGAT
*
13586509 CTTAGATTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
13586535 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
13586561 C
1 C
13586562 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:13588356 original size:709 final size:707
Alignment explanation
Indices: 13586686--13588859 Score: 3119
Period size: 709 Copynumber: 3.0 Consensus size: 707
13586676 CTCGATCCAA
* * *
13586686 TCCGATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
*
13586751 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
66 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
13586816 GTGGGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
13586881 CAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCACAA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAA
* * * *
13586946 TTTTGGAAACTTTTTGCGGTTTGGGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAAC
261 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAAC
* ** *
13587011 TTGGAAGACGTGATCCCCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
326 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCAAAGT
13587076 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
13587141 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
455 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13587206 GGGGGCCAATATAAGGGCCAAGTGCTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-C
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * *
13587270 CCCATATCGTCGGAACCCCAATGCCACCGGCCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCC
584 CCCA-ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCC-GCG-TG--CC--TGATGGTGCCC
** *
13587335 CGGTGAAGAAAAATGT-GGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCAC-AACCCTCGG
642 CGACGAAG-AAAAT-TCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-C-CTAACCCTCGG
*
13587398 TCTGA
703 TCTGG
* * * *
13587403 TCCGATCTTACACTGGGAATGAACTTCGTATGACTAAGCCAACCGACGAAACGAGCGGGCGGGAG
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * *
13587468 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAATCCGTTGATCGATAGGGTGGTAG
66 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
13587533 GTGGATTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCCTT-TAAATTCAT
131 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG-CTTGTAAATTCAT
* * * *
13587597 ACAATGGTCCCTTAAGCGTTCATGTGAAGTTTCATGGCATGACGACTCGTTTTCTATTTTTCATG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA
* * * ** * * *
13587662 ATTTTCCAAATTTTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGGAAGGAGTTTTGACGCCA
260 ATTTTCGAAA-CTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTAGGAAGGAGTTTTGGCCCCA
* *
13587727 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTAAAAACTCAA
323 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCAA
* * *
13587792 AGTGTACAAAATTTTGTGACCAATTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTG
387 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
13587857 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
452 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* ** * * *
13587922 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGTTCATCATGTTCACACAGCCCCTCG
517 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
* *
13587987 GTCCCCCAATCGTCGAAACCCCAATGCCGTCGGTTAGGTTCT-C-CG-G-C-GATGGTGCCCCGA
581 G-CCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGCGTGCCTGATGGTGCCCCGA
13588047 CGAA-AAAAGTTACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTG
645 CGAAGAAAA-TT-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-TAACCCTCGGTCTG
13588111 G
707 G
* *
13588112 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCG
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* *
13588177 GGCGGGTGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
66 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
** *
13588242 GTGGGCGTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
** *
13588307 CAATGGTCGTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAA
* * * *
13588372 TTTTTGAAACTTTTTGCGGTTCGGGATTTGTTAAGATTTTGTAGGAAGGAGTTTTGGCCCCAAAC
261 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAAC
* * * *
13588437 TTGGTAGACGGGATCCTTGTTTTTTTGTTGGCATGCACAAGAAATTCAGCAAAAAACTCAAAGTG
326 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTG
* *
13588502 TACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
391 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
13588567 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
456 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
13588632 GGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCC
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCC
*
13588697 CCTATCGTC-AGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGTTGCTCCTGTGATGGTGCCCCG
585 CCAATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGCG-TG--CC--TGATGGTGCCCCG
* * ** * * * * *
13588761 ACGAAGAAAAATGCGACAGTAGCACTTGCTCGAGCACAGCACGTGCTGCCTCAACCCTCGGTCCG
644 ACGAAG-AAAATTCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCT-AACCCTCGGTCTG
13588826 G
707 G
* *
13588827 TCTGATCTTTGACTGGGAATGAACTCCGTATGC
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
13588860 TTAGACTGGG
Statistics
Matches: 1297, Mismatches: 133, Indels: 56
0.87 0.09 0.04
Matches are distributed among these distances:
704 1 0.00
705 41 0.03
706 192 0.15
707 72 0.06
708 26 0.02
709 301 0.23
712 2 0.00
714 1 0.00
715 91 0.07
716 1 0.00
717 247 0.19
718 30 0.02
719 258 0.20
720 29 0.02
721 5 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (707 bp):
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAA
TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CAATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGCGTGCCTGATGGTGCCCCGACGAAGA
AAATTCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCTAACCCTCGGTCTGG
Found at i:13590506 original size:26 final size:26
Alignment explanation
Indices: 13590455--13590507 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13590445 CCGGTCTGAT
* * *
13590455 CTTAGACTGGGAATGCACTCCATATG
1 CTTAAACTGGGAATGAAATCCATATG
*
13590481 CTTAAACTGGGAATGAAATCCGTATG
1 CTTAAACTGGGAATGAAATCCATATG
13590507 C
1 C
13590508 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAAATCCATATG
Done.