Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 72 of 131
Found at i:13591522 original size:26 final size:26
Alignment explanation
Indices: 13591486--13591538 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13591476 TCGATCCGAT
13591486 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13591512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13591538 C
1 C
13591539 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13591528 original size:129 final size:129
Alignment explanation
Indices: 13591298--13591548 Score: 364
Period size: 129 Copynumber: 1.9 Consensus size: 129
13591288 GAAGAAAAAT
* * * *
13591298 ACGGCACCAGCACATGCCCGAGCCCTGTATGTGATGCAGGAACCCTCGGTCTCGTCCGATCTTAG
1 ACGGCACCAGCACATGCCCGAGCCCGGCATGTGATCCAGCAACCCTCGGTCTCGTCCGATCTTAG
* * *
13591363 ATTGGGAATGAGCTCCTATGCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCCGATG
66 ACTGGGAATGAACTCCTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCCGATG
* *
13591427 ACGGCACCAGCACATGCCCGA-CCCGGCATGTGCTACCA-CAACCCTCGG-GTCGATCCGATCTT
1 ACGGCACCAGCACATGCCCGAGCCCGGCATGTGAT-CCAGCAACCCTCGGTCTCG-TCCGATCTT
*
13591489 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
64 AGACTGGGAATGAACTCC-TATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAAC
13591549 ACATAAAATG
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
127 3 0.03
128 44 0.40
129 62 0.57
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (129 bp):
ACGGCACCAGCACATGCCCGAGCCCGGCATGTGATCCAGCAACCCTCGGTCTCGTCCGATCTTAG
ACTGGGAATGAACTCCTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCCGATG
Found at i:13592396 original size:26 final size:26
Alignment explanation
Indices: 13592367--13592419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13592357 CTGATCCGAT
* *
13592367 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13592393 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13592419 C
1 C
13592420 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13593276 original size:876 final size:864
Alignment explanation
Indices: 13591509--13593104 Score: 2318
Period size: 876 Copynumber: 1.8 Consensus size: 864
13591499 TGAACTCCAT
* * ** * *
13591509 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACATAAAATGAGTGTGCGGGTGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGCGATC
* * * * * *
13591574 AGTCGGCCAGAGAGGTGGGATGCACAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGA
66 AGCCGGCCAGAGAGGCGGGATGCACAAGCCGAGGATCGACCGAGTCCCCCTCTGCATGCTGCCGA
* * * **
13591639 TCCTGCTACTGCAACCCTCATTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
131 TCCTGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
13591704 CAACCGATGAAACGAGCGGGCGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCG
196 CAACCGACGAAACGA---GGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
13591769 CAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCCTATTTTTGCATGCCAATG
258 CAAGCCGTGGATCGATAGGATGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
13591834 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCTA
323 CCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAA
* *
13591899 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTT
388 GACGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTT
*
13591964 TTTCGGAAGTAGTTTGGGCCCCAAACTTGGTAGAAATGATCCTTACATTTTTGTTGGCATGCACA
453 TTTCGGAAGGAGTTTGGGCCCCAAACTTGGTAGAAATGATCCTTACATTTTTGTTGGCATGCACA
*
13592029 AAAAAAGTCAGCTAAACAATCAAAGTGTACAAGATTTTATGACCATTTGAAAAAGGTGTCCCCAT
518 AAAAAAGTCAGCTAAACAATCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCAT
* *
13592094 TTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCTTGCTCTTTAAGGGGGTGTGA
583 TTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCATGCTCTTTAAGGGGGTGTAA
*
13592159 GTTCTGGAGGTTTGATGAGGGATAGGAGGCCAACATAAGGGCCAAGTACCAGCAGCCATCGCGCA
648 GTTCTGGAGGTTTGATGAGGGATAGGAGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCGCA
13592224 TCAACCCCCCGACCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGGT
713 TCAACCCCCCGACCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGGT
* * * * **
13592289 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTC
778 GCCCCGACGAAAAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTCCCGTAACCCTC
13592354 GGTCTGATCCGATCTTAGATTGGGAATGAACTCCG
843 -GTC---TCCGATC-----TTGGG-A-G-A-TCCG
* *
13592389 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGAT
1 -ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGCGAT
* * * * *
13592454 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGATGATCGGCCGGGTCCCCCTCTGCATGCTGCCG
65 CAGCCGGCCAGAGAGGCGGGATGCACAAGCCGAGGATCGACCGAGTCCCCCTCTGCATGCTGCCG
* *
13592519 ATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGTCTGGGAATGAACTCCGTATGCCTAAG
130 ATCCTGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
13592584 CCAACCGACGAAACGA-GCGGGTGGACGGGCGGGCACTACGCCGGCTAGAGAGACGTGATGCGCA
195 CCAACCGACGAAACGAGGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * **
13592648 AGCCGTTGATCGATAGGGTGGTAGGTGAGTTTAGGCAGATCTTCATATTTCTGTGTGCCAATGCC
260 AGCCGTGGATCGATAGGATGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
13592713 ATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGA
*
13592778 CGACTCGTTTTCTATTTTTCA-AAATTTTGAAACTTTTTGCTGTTTGGGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTT
* ** **
13592842 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
455 TCGGAAGGAGTTTGGGCCCCAAACTTGGTAGAAATGATCCTTACATTTTTGTTGGCATGCACAAA
* * * *
13592907 AAAATTCCGCTAAA-AACTCGAAGTGTACAAGATTTTGT-AGCCATTTGAAAAAAGTGTCCCCAT
520 AAAAGTCAGCTAAACAA-TCAAAGTGTACAAGATTTTATGA-CCATTTGAAAAAAGTGTCCCCAT
* *
13592970 TTTAGACACTTTAATGGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTC--ATGCTCTTTAAGGGGGTGT
* * * * * *
13593035 AAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCATCACCCATCGCA
646 AAGTTCTGGAGGTTTGATGAGGGATAGGAGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCG
13593100 CATCA
711 CATCA
13593105 TGCGCGCACA
Statistics
Matches: 644, Mismatches: 67, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
875 3 0.00
876 194 0.30
877 184 0.29
878 80 0.12
881 183 0.28
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (864 bp):
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGCGATC
AGCCGGCCAGAGAGGCGGGATGCACAAGCCGAGGATCGACCGAGTCCCCCTCTGCATGCTGCCGA
TCCTGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGATGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTGGGCCCCAAACTTGGTAGAAATGATCCTTACATTTTTGTTGGCATGCACAAAA
AAAGTCAGCTAAACAATCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCATGCTCTTTAAGGGGGTGTAAGTT
CTGGAGGTTTGATGAGGGATAGGAGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCGCATCA
ACCCCCCGACCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGGTGCC
CCGACGAAAAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTCCCGTAACCCTCGTC
TCCGATCTTGGGAGATCCG
Found at i:13593969 original size:718 final size:715
Alignment explanation
Indices: 13592523--13594023 Score: 2058
Period size: 718 Copynumber: 2.1 Consensus size: 715
13592513 CTGCCGATCC
* *
13592523 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13592588 CCGACGAAACGAGCGGGTGGACGGGCGGGCACTACGCCGGCTAGAGAGACGTGATGCGCAAGCCG
66 CCAACGAAACGAAC-GGTGGACGGACGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCA
* * * **
13592653 TTGATCGATAGGGTGGTAGGTGAGTTTAGGCAGATCTTCATATTTCTGTGTGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCATTTT
13592718 TATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
195 TATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
13592783 CGTTTTCTATTTTTCAAAATTTTGAAACTTTTTGCTGTTTGGGATTTTTTAAAATTTTTTCGGAA
260 CGTTTTCTATTTTTCAAAATTTTAAAACTTTTTGCTGTTCGGAATTTTTTAAAATTTTTTCGGAA
* * *
13592848 GGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
325 GGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATT
* * *
13592913 CCGCTAAAAACTCGAAGTGTACAAGATTTTGTAGCCATTTGAAAAAAGTGTCCCCATTTTAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTAGCCATTTGAAAAAAGTATCCCCATTTCAGACA
* *
13592978 CTTTAATGGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTT
455 CTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTC
* * *
13593043 GAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCATCACCCATCGCACATCATGC
520 GAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGC
* * ** * * *
13593108 GCGCACACCCAATCCCGGCCCCCCCGATCGTCGGAACCCTAATGTCGCTGGTCAGGTTCTCCGGC
585 GCGCACACCCAACCCCGACCCCCCCGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGAC
* * * * ** * * * *
13593173 GATGCTCCGACGATGGTGCCCTGGCGAAAAAAAATACGACACTAGTACGTGCTCGAGCCCAGCGT
650 GATGCTCCGACGATGGTGCCCCGACGAAAAAAAATACGACACCAGCACAAGCCCAAGCCCAACAT
13593238 G
715 G
* *
13593239 TGCTCCCGTAACCCTCCCGTCTGGGTCC-ATCTTAGACTGGGGAATGAAACTCCGTATGCCTAAG
1 TGCTGCCGTAACCCT-CAGTCT-GGTCCAATCTTAGACT-GGGAATG-AACTCCGTATGCCTAAG
*
13593303 CCAACCAACGAAAACGAAC-G-GG-CGGACGGGCACTATGGCTCGGCTAGA-AGACGGGATGCGC
62 CCAACCAACG-AAACGAACGGTGGACGGACGGGCACTA-CGC-CGGCTAGAGAGACGGGATGCGC
* *
13593364 -AGCCATGGATCGATTAGGAGTGGTAGGTGGGTTTAAGG-ACATC-CCATATTTCTGCATGCCGA
124 AAGCCATGGATCGA-TAGG-GTGGTAGGTGAGTTT-AGGCACATCTCCATATTTCTGCATGCCAA
* * *
13593426 TGCCATTTTTATGGCTTTTAGATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
186 TGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** *
13593491 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAGTTTTTG-TGGTTCGGAATTTTTTAAAA
251 AAGACGACTCGTTTTCTATTTTTCAAAATTTT-AAAACTTTTTGCT-GTTCGGAATTTTTTAAAA
* *
13593555 TTTTTTCGGAAGGAGTTTTGGCGCAAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGGATGC
314 TTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGC
* *
13593620 ATAAAAAAATTCAGCTAAAAACT-GACTGTGTACAAGATTTTGT-GACCATTTGAAAAAAGTATC
379 ACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTAG-CCATTTGAAAAAAGTATC
* *
13593683 CTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
442 CCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
13593748 GGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
507 GGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
13593813 TCGCACATCATGTGCGCACAGCC-GCCCTCGACCCCCCCGATCACCGGAACCCTAATGCCGCCGG
572 TCGCACATCATGCGCGCACACCCAACCC-CGACCCCCCCGATCACCGGAACCCTAATGCCGCCGG
** * * *
13593877 TCAGGTTCTTTGACGATGCTCC-AGCGGTGGTGCCCCGACGAAGAAAAATGC-AGCACCAGCACA
636 TCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAAAAAAATACGA-CACCAGCACA
13593940 AGCCCAAGCCCAACATG
699 AGCCCAAGCCCAACATG
* ** * * * *
13593957 TGCTGTCGTAACCCTTGGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGCATGCCTAAGTCAA
1 TGCTGCCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
13594022 CC
66 CC
13594024 CAAAAATGAG
Statistics
Matches: 691, Mismatches: 76, Indels: 37
0.86 0.09 0.05
Matches are distributed among these distances:
715 21 0.03
716 47 0.07
717 163 0.24
718 424 0.61
719 29 0.04
720 7 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
TGCTGCCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCAACGAAACGAACGGTGGACGGACGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCAT
GGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCAAAATTTTAAAACTTTTTGCTGTTCGGAATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTAGCCATTTGAAAAAAGTATCCCCATTTCAGACAC
TTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCG
AGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCG
CGCACACCCAACCCCGACCCCCCCGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACG
ATGCTCCGACGATGGTGCCCCGACGAAAAAAAATACGACACCAGCACAAGCCCAAGCCCAACATG
Found at i:13596172 original size:714 final size:713
Alignment explanation
Indices: 13594201--13596315 Score: 3180
Period size: 714 Copynumber: 2.9 Consensus size: 713
13594191 GAGCGAGCAG
* * * * *
13594201 GCACTACGCCCACCAGAGAGACGGGATGCGCAAGTCGTGAATCGATAGGGTGGTAGGTGGGTTTT
1 GCACAACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
13594266 GGCACATCTTCATATTTCTACATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-G
* * * * *
13594331 CTTAAGCATTGATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
130 CTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * *
13594396 CTTTTTGCGGTTCGAGATTTTTTAAGATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAC
195 CTTTTTGCGGTT-GGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA-
* * *
13594461 TTGATCCCTGT-ATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
258 TTGATCCTTGTAATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
*
13594525 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCT
322 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
13594590 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
387 GTAAAATCTCAAATGCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
13594655 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCACCCTCGGTCCCGCCGA
451 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGG-CCCCCCGA
* * * * * *
13594720 TCGTCGAAACCCTAATGCCGTTGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCTCAACAA
515 TCGTCGAAACCCTAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGA
* * *
13594785 AGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGGTCC
580 AGAAAAATGCG-CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCC
* * * * *
13594850 GATCTTAGA-TAGGGAAAGAACTCCGTATGCCTAAGCCAACTGACGAAAGGAGCGGGCGGACGGG
644 GATCTTAGACTA-GGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGGGCGGACGGG
13594914 CGGGCA
708 CGGGCA
* *
13594920 GGCACAACGCCGACCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
1 -GCACAACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
13594985 AGACATATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTG
65 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTG
* * * **
13595050 CCTTAAGCCTTCACGTCAAGTTTCATGGAAAGAGGGCTCGTTTTCTATTTTTCACGATTTTCAAA
130 -CTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
13595115 AATTTTTACGGTTTGGGATTTTTTAAAATTTTATC-AGAAGGAGTTTTGGTCCCAAACTTGGTAG
194 ACTTTTTGCGG-TTGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAG
* *
13595179 ACATGATCCTTGTAATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
257 A-TTGATCCTTGTAATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
*
13595244 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
321 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
13595309 TGTAAAATCTGAAATGCTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
386 TGTAAAATCTCAAATGCTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
13595374 ATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCACCCCCGGCCCCCCCGA
451 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGG-CCCCCCGA
* * ** *
13595439 TCGTTGAAACCCTAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTAACTCGGCGA
515 TCGTCGAAACCCTAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGA
*
13595504 AGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGTATGTGCTGCCACAACCCTCAGTCTGGTCC
580 AGAAAAATGC-GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCC
* *
13595569 GATCTTAGACTAGGAATGAACTCTGTATGCTTAAGCTAACCGACGAAACGAGCGGGCGGGCGGGC
644 GATCTTAGACTAGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGGGCGGACGGGC
13595634 -GG-A
709 GGGCA
* *
13595637 -CACAACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTA
1 GCACAACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
13595701 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGC
66 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGC
** *
13595766 TTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTACCTTTCACAATTTTTGAAAC
131 TTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
13595831 TTTTTGCTGTCTGGGATTTTTTAAAATTTTTTCGAAAGGAGTGTTGGCCCCAAACTTGGTAGATG
196 TTTTTGCGGT-TGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAT-
*
13595896 TGATCCTTGTAATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGTAGTGTACAAGATT
259 TGATCCTTGTAATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATT
13595961 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
324 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
13596026 AAAATCTCAAATGCTGTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
389 AAAATCTCAAATGCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * * * *
13596091 ATAAGGGCCAGGTACCAGCACCCATCGTACATCATATGCGTATACCCCCCCCGGCCCCCTGATCG
453 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGGCCCCCCGATCG
* * * *
13596156 TCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGGTCCTACGATGGTGCCTCGACGAAGA
518 TCGAAACCCTAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGAAGA
* **
13596221 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCTGGTCCGAT
583 AAAATGC-GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCCGAT
* * *
13596286 CATAGACTGGGAATGAACTTTGTATGCTTA
647 CTTAGACTAGGAATGAACTCTGTATGCTTA
13596316 GACTGGGAAT
Statistics
Matches: 1265, Mismatches: 120, Indels: 26
0.90 0.09 0.02
Matches are distributed among these distances:
713 1 0.00
714 405 0.32
715 216 0.17
717 1 0.00
718 2 0.00
719 273 0.22
720 360 0.28
721 7 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (713 bp):
GCACAACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGC
TTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTGCGGTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATTG
ATCCTTGTAATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGGCCCCCCGATCGTCG
AAACCCTAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGAAGAAAA
ATGCGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCCGATCTTA
GACTAGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCA
Found at i:13596336 original size:26 final size:26
Alignment explanation
Indices: 13596288--13596338 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13596278 GGTCCGATCA
**
13596288 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
13596314 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
13596339 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:13598198 original size:717 final size:714
Alignment explanation
Indices: 13596468--13598875 Score: 3286
Period size: 717 Copynumber: 3.4 Consensus size: 714
13596458 AATTTGGTCT
* * * * * *
13596468 GATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAGCTAACAAAATGAGCAGACGGGTGGAC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCAGGCGGGTGGGC
* * * * *
13596533 GGGCGGGCATTACGTCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * *
13596598 AGCTTAGGCACATCTTCATATTTCTACGTGCAAATGCCATATGTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
** *
13596663 TGGTCCCTTAAGCCTTCACACGAAT-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATT
196 TGGTCCCTTAAGCCTTCACGTG-ATGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACAATT
* * * *
13596727 TTTGAAACTTTTTGTGGTTCAGGATCTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACCT
260 TTTGAAACTTTTTGTGGTTCAGGAT-TTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
13596792 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
324 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
13596857 ACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCTCATTTCAAACACTTTAATGGCTACTGGCAGC
389 ACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
13596922 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATA-G
13596987 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGGCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCC
* * * *
13597052 CCCGATCGCCGGAACCCTAATGCCGCTGG-CAAGGTTCTACGGTGATGCTTC-GACGATGGTGCC
580 CCCGATCGTCGGAACCCTAATGCCGCCGGTC-AGGTTCTCCGATGATGC-TCAGACGATGGTGCC
* * * * *
13597115 TCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGCGCTTCCACAACCCTCGGT
643 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGT
*
13597180 CTGATCC
708 CCGATCC
* * ** *
13597187 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGAGCAGGCGGGT----
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCAGGCGGGTGGGC
* * * * * *
13597248 GGGCGGGCATTACATCGACTAAAGAGGCGAGATGCGCAAG-CGTGGATTGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
13597312 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
13597377 TGGTCCCTTAAGCCCTCATGTGATGTTTCATGGCAAGAAGTCTCATTTTCTATTTTTTACAATTT
196 TGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACAATTT
**
13597442 TTGAAACTTTTTACGGTTCAGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
261 TTGAAACTTTTTGTGGTTCAGGATTTTTTAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
*
13597507 GTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAGAA-TCAGCTAAAAACTCGAAGTGT
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGT
13597571 ACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
389 ACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
13597636 AACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-CATTCTCAAGGTTTGATGAGGGATAGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAC-TTCTCGAGGTTTGATGAGGGATAGG
*
13597700 GGCCAAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCC
518 GGCC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * * *
13597765 CAGATCGTTGGAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCAG-TGATGGTGCCCC
582 C-GATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCT-CAGACGATGGTGCCCC
* * * *
13597829 GACGAAGAAAATTACGGCACCAGCTCATGCCCGAGCCCAGTATGTGCTGCCACAACCCTCAATCC
645 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCC
*
13597894 -AGTTC
710 GA-TCC
* * * * *
13597899 GATCTTAGACTAGGAATGAGCTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGTGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCAGGCGGGTGGGC
* *
13597964 GGGCGGGCACTACGTCGACCAGAGAGACAAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* ** *
13598029 GGTTTTGGCACATCTTCATATTTCTGGGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
13598094 TGGTCCTTTAAGACC-TCACGTGATGTTTTATGGCAAGAAGACTCGTTTTCTATTTTTCACGATT
196 TGGTCCCTTAAG-CCTTCACGTGATGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACAATT
* *
13598158 TTTGAAACTTTTTGTGGTTC-GAGATTTTTTGAAATTTTTTCGGAAAGAGTTTTGGCCCTAAACT
260 TTTGAAACTTTTTGTGGTTCAG-GATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
13598222 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG-TAAAAAAGTCGAAGT
323 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGT
* * * *
13598286 ATATAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAACGGCTATTGGCA
387 GTACAAGATTTTGTGACCATTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
13598351 GCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGACTTCTCGA-GTTTGATGAGGGATA
451 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATA
* * *
13598415 GGGGTCCAATATAAGGGCCAAGTACTAGCAACCATCACACATCATGTGCGCACACCCCCCGGCCC
516 GGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CC
* * * * ** *
13598480 CCCCGATCATCGAAACCCTAATGCCGCCGATCAGGTTCTCTGATGATTATCAGACGATCGTGCCC
579 CCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCAGACGATGGTGCCC
* ** * * * *
13598545 CGACGAAGAAAAATGCAACACCAACACATGCCCGAGCCCGGCATATGCTGCC-CTAACCCTCTGT
644 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC-AACCCTCAGT
13598609 CCGATCC
708 CCGATCC
* * * * *
13598616 GATCTTAGACTGGGAATGAACTCCGTATACATAAGCCAACCAACAGAACGAGCGGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCAGGCGGGTGGGC
** ** * *
13598681 ATGTAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
13598746 GGTTTAGGCATATCTTCATATTTCTACGTGCCAATGCCATTTTTCTGGCTTGTAAATTAATACAA
131 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * ** * *
13598811 AGTTCCCTTAAGCCTTCACCAGAAGTTTCATGGCAAGACA-ACTCGTTTTCTATTTTTCACGATT
196 TGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGA-AGACTCGTTTTCTATTTTTCACAATT
13598875 T
260 T
13598876 CAAAAAATTT
Statistics
Matches: 1495, Mismatches: 165, Indels: 60
0.87 0.10 0.03
Matches are distributed among these distances:
711 12 0.01
712 166 0.11
713 157 0.11
714 265 0.18
715 37 0.02
716 43 0.03
717 668 0.45
718 93 0.06
719 54 0.04
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (714 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCAGGCGGGTGGGC
GGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACAATTT
TTGAAACTTTTTGTGGTTCAGGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
CGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCAGACGATGGTGCCCCGACGAA
GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCGATCC
Found at i:13599449 original size:26 final size:26
Alignment explanation
Indices: 13599420--13599472 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13599410 CTGGTCCAAT
*
13599420 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
13599446 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
13599472 C
1 C
13599473 CTGAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:13601052 original size:26 final size:26
Alignment explanation
Indices: 13601023--13601073 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13601013 GCTTCGATCT
13601023 TAGACTGGGAATGAAC-TCTGTATGCG
1 TAGACTGGGAATGAACTTC-GTATGCG
13601049 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
13601074 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCG
Found at i:13602744 original size:874 final size:876
Alignment explanation
Indices: 13600275--13603729 Score: 4240
Period size: 902 Copynumber: 3.9 Consensus size: 876
13600265 GCCCAGCATG
* * * * *
13600275 TGCTGCCACAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
13600340 CCGATGAAACAAGCGGGCGAACAGGCGGGCGGGCACTACGTCGGCCAGAAAGATGGGATGCACAA
66 CCGACGAAACGAGCGAGCGAACA-GCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
* **
13600405 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTATGTGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
13600470 TTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGAC
* *
13600535 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
260 GACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
** * * **
13600600 CGGAAGGAGTTTGGCCCCAAACTTGGTAGGCATGATCCTTGTATTATTGTTGGCATTTACAAAAA
325 CATAAGGAGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
13600665 AATTCAGCTTAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTTA
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
13600730 GACACTTTATTGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
13600795 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACAAGCACCCATCACACATC
520 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* * ** * *
13600860 ATGCGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCGTAAT-TCTTCCGGTCAGGTTCTCCG
585 ATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTC--GCGATCAGGTTCTCCG
* *
13600924 ACGATGCTCCGGCGATGGTGCCCCGACGAGGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
647 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGGGCCCAGC
* *
13600989 ATGTGCTGCCGCAACCCTCAGTCTGCTTCGATCTTAGACTGGGAATGAACTCTGTATGCGTAGAC
712 ATGTGCTGCCGCAACCCTC-G---G-TACGA----A-TCT--GAAT--A--C----T---TAGAC
* * * *
13601054 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCTCTCAGTC-AGCCA
754 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGA-CCA
* ** * * * *
13601118 GAGGGGCGGGATGCAAAATTCGGGGATCAATCGGG-CCCACCTCTGCGTGCTGCCGATCC
818 GAGGGGCGAGATGCGTAAGTCGAGGATCAGTCGGGTCCC-CCTCTGCGTGCTGTCGATCC
* * * * *
13601177 TGCTACCGCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCTGCATGCCTAGGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * *
13601242 CCGATGAAACGAGCGAACGGGCGGGCGGGCAGTCACTACGCCGGCCAAAGAGACAGGATGCACAA
66 CCGACGAAACGAGCGAGCGAAC-AGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
* * * *
13601307 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAAATCTTCATATTTTTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
13601372 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGAC
** *
13601437 GACTTGTTTTCTATTTTTCACAATTTTTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTT
260 GACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTT
* *
13601502 TGA-AAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 TCATAAGGAGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
13601566 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13601631 AGACACTTTAATGGCTACT-GCTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 AGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
13601695 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* *
13601760 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCG
583 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCGA-TCAGGTTCTCCG
* * * * *
13601825 ACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCTCATCCCCGGGCCCAGC
647 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGGGCCCAGC
* *
13601890 ATGTGCTGCCGTAACCCTCGGTACG-ATCTG-AT-CTTAGACTGGGAATGAACTCAGTATGCCTA
712 ATGTGCTGCCGCAACCCTCGGTACGAATCTGAATACTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
13601952 AGTCCAA-CCACAAAATGAGCGTACGGGCACTCAATCGACCAAAGGGGCGAGATGCGTAAGCCGA
777 AGT-CAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACCAGAGGGGCGAGATGCGTAAGTCGA
*
13602016 GGATCAGTCGGGTCCCCCTCTACGTGCTGTCGATCC
841 GGATCAGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
13602052 TACTGTCGCAACCCTCGAT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCA
1 TGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** *
13602116 ACCGACGAAATGAGCGAGCGAACGAGCGGGCGGGCACTATGCCGATC-GAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCGAGCGAAC-AGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACA
* * *
13602180 AGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATTTTCATATTTCTGTGTGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * * * *
13602245 ATTTTTATGGCTTGTAAATTAATGCAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGA
* * **
13602310 TGACTCATTTTCTATTCTTCACAATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTT
259 CGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
13602375 TCATAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGAATGCATAAA
324 TCATAAGGAG-TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
13602440 AAAA-TCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
13602504 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * **
13602569 GTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGTACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* ** * * * *
13602634 TCATGTGTGCACACCCCTTGGGCCCCCGATCGTCGGAACCCTAATGTCGCTGATTAGGTTCTCCA
583 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGC-GATCAGGTTCTCCG
* * * * * *
13602699 ACGATGATCCGGTGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCC-GACCTAGC
647 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGGGCCCAGC
* *
13602763 ATGTGCTTCCGCAACCCTCAGACCGGTCCGATCATAGACTGGGAATGAACTCCATATGTTTAGGC
712 ATGTGCTGCCGCAACCCT-----CGGTACGA--AT---CT--GAAT--ACT---TA-G---A--C
* * * *
13602828 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGGGCGGGCGCTCAGTCGGCCAG
754 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACCAG
* * ** * * * *
13602893 AGGGGCGTGATGCGTAAGTCAAGGATTGGCCGGGTCCGCTTCTGCGTGCTATCGATCC
819 AGGGGCGAGATGCGTAAGTCGAGGATCAGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
13602951 TGCTGCCGCAACCCTCAGTCTGATATGATCTTAGACTGGGAATGAA-TGCCCTATGCGTAAGCGA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCA
* * ** * * * * *
13603015 ACCGACGAAA-GTAGCGGGTGGGCAGATGGGCAGGCACAACGTCGGCTAGAGAGACGGGATGCGC
65 ACCGACGAAACG-AGCGAGCGAACAG-CGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCAC
* *
13603079 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAATGC
128 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * *
13603144 CATTTTTATGGCTTGAAAATTCATACAATGGGCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAG
** * * * * *
13603209 ACGACTCATGTTT-TATTTTTCACAATTTTCCAAACTTTTTTCAGTTTGGGATTTTTGAAAATTT
258 ACGACTCAT-TTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
*
13603273 TTTCGAT-AGGAGTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTAGCATGCA
322 TTTC-ATAAGGAG-TTTGGCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCA
* *
13603336 CAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCC
384 C-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
13603401 CATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGG
448 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
13603466 TGTGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
513 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
13603531 ACATATCATGTGCACACACCCCCTGGCCCCCCCGATCGAT-GGAACCCCAATGCTAC-CGGTTAG
578 ACACATCATGTGCGCACACCCCCCGG-CCCCCCGATCG-TCGGAACCCCAATG-T-CGCGATCAG
* * * *
13603594 GTTCTTCGACGATGCTCCGGCGATGGT-ACCCAACGAAGAAAAATGTGGCACCAGTACATGCCCG
639 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
* ** * * * * *
13603658 GGCCCAGTATGTGCTATCGCAACCCTCAGTCCG-GTCCG-AT-CTTAGACTGCGAATGAACTCCG
704 GGCCCAGCATGTGCTGCCGCAACCCTCGGTACGAATCTGAATACTTAGACTGGGAATGAACTCCG
13603720 TATGCCTAAG
769 TATGCCTAAG
13603730 CCGACGGATG
Statistics
Matches: 2233, Mismatches: 265, Indels: 135
0.85 0.10 0.05
Matches are distributed among these distances:
873 29 0.01
874 475 0.21
875 245 0.11
876 7 0.00
877 25 0.01
878 7 0.00
879 1 0.00
881 2 0.00
882 2 0.00
883 2 0.00
884 2 0.00
886 3 0.00
887 4 0.00
888 1 0.00
889 2 0.00
890 5 0.00
891 1 0.00
892 1 0.00
893 2 0.00
894 1 0.00
895 1 0.00
896 3 0.00
897 2 0.00
898 13 0.01
899 181 0.08
900 243 0.11
901 131 0.06
902 762 0.34
903 76 0.03
904 3 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (876 bp):
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGAACAGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGACG
ACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
ATAAGGAGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
TGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCGATCAGGTTCTCCGACGA
TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGGGCCCAGCATGT
GCTGCCGCAACCCTCGGTACGAATCTGAATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCACTCAGTCGACCAGAGGGGCGAGATGCGTAAGTCGAGGATC
AGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
Found at i:13604347 original size:715 final size:718
Alignment explanation
Indices: 13603057--13604752 Score: 2550
Period size: 715 Copynumber: 2.4 Consensus size: 718
13603047 GGCACAACGT
* *
13603057 CGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCT
* * *
13603122 TCATATTTCTGCGTGCTAATGCCATTTTTATGGCTTGAAAATTCATACAATGGGCCCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
13603187 TCACGTAAAGTTTCATGGCAAGACGACTCATGTTT-TATTTTTCACAATTTTCCAAACTTTTTTC
131 TCACGTGAAGTTTCATGGCAAGACGACTCAT-TTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * *
13603251 AGTTTGGGATTTTTGAAAATTTTTTCGATAGGAGTTTTGGCCCCAAACTTGGTAGA-AGTGATCC
195 GGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACA-TGATCC
* *
13603315 TTGTATTTTTGTTAGCATGCACAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTG
259 TTGTATTTTTGTTAGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAG
* *
13603380 ACCTTTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
324 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* ** * * *
13603445 GTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
389 CTCAAATGCTCTTTAACAGGGTGTGAGCTATCGAGCTTTGATGAGGGATAGGGGGCAAATATAAG
* *
13603510 GGCCAAGTACCAGCACCCATCACATATCATGTGCACACACCCCCTGGCCCCCCCGATCGATGGAA
454 GGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCCGATCGATGGAA
* * * * *
13603575 CCCCAATGCTACCGGTTAGGTTCTTCGACGATGCTCCGGCGATGGTACCCAACGAAGAAAAATGT
519 CCCCAATGCCACCGGTTAAGTTCTTCGACAATGCTCCGACGATGGTACCCAACGAAGAAAAATGC
* ** * *
13603640 GGCACCAGTACATGCCCGGGCCCAGTATGTGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGAC
584 GGCACCAGCACATGCCCGAACCCAGCATGTGCTATCGCAACCCTCAGTCCGGTCCGATCTAAGAC
* * * * *
13603705 TGCGAATGAACTCCGTATGCCTAAGCCGACGGATGAAACGAGC-GAGCGGGCGGGCGAGC-GAGT
649 TGCGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGACCAGA-CGGGCGGGAGAGCAG-GC
**
13603768 ACTATGC
712 ACTACAC
* * *
13603775 CGGCCAGAGAGACGGGATGCGCAAGCTAAGGATCGATAAGGTGGTAGGTGGGTTTAAGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCT
** * *
13603840 TCATATTTCTATGTGCCAATGCCA-TTTTATGGCTTGTAAATTCGTAGAATGGTCCCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * ** **
13603904 TCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCG
131 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
*
13603969 GTTTGGGATTTTTTTAAATTTTTTCGAAAGGA-TTTTGGCCCCAAACTTGGTAGACATGATCCTT
196 GTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
*
13604033 GTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGAC
261 GTATTTTTGTTAGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGAC
*
13604097 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
326 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13604162 CAAATGCTCTTTAACAGGGTGTGAGTTATCGAGCTTTGATGAGGGATAGGGGGCAAATATAAGGG
391 CAAATGCTCTTTAACAGGGTGTGAGCTATCGAGCTTTGATGAGGGATAGGGGGCAAATATAAGGG
* *
13604227 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATC-ACTGGAAC
456 CCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCCGATCGA-TGGAAC
** * * *
13604290 CCCAATGCCGTCGGTTAAGTTC-TCTGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
520 CCCAATGCCACCGGTTAAGTTCTTC-GACAATGCTCCGACGATGGT-ACCCAACGAAGAAAAATG
* * *
13604354 CGTCACCAGCACATGCCCGAACCCAGCATGTGCTGTCGCAACCCTCAGTTCGGTCCGATCTAAGA
583 CGGCACCAGCACATGCCCGAACCCAGCATGTGCTATCGCAACCCTCAGTCCGGTCCGATCTAAGA
* *
13604419 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGACCAGACGGGCGGGAGGGCAGGCA
648 CTGCGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGACCAGACGGGCGGGAGAGCAGGCA
13604484 CTACAC
713 CTACAC
* *
13604490 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTTGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCT
*
13604555 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
13604620 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
131 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
* * * *
13604685 GATCGAGATTTTTTAAAATTTTTTC-AGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCT
196 GTTTGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
13604749 TGTA
260 TGTA
13604753 CAAGATTTTG
Statistics
Matches: 880, Mismatches: 88, Indels: 21
0.89 0.09 0.02
Matches are distributed among these distances:
713 3 0.00
714 51 0.06
715 414 0.47
716 178 0.20
717 153 0.17
718 81 0.09
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (718 bp):
CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
GTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
GTATTTTTGTTAGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAACAGGGTGTGAGCTATCGAGCTTTGATGAGGGATAGGGGGCAAATATAAGGG
CCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCCGATCGATGGAACC
CCAATGCCACCGGTTAAGTTCTTCGACAATGCTCCGACGATGGTACCCAACGAAGAAAAATGCGG
CACCAGCACATGCCCGAACCCAGCATGTGCTATCGCAACCCTCAGTCCGGTCCGATCTAAGACTG
CGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGACCAGACGGGCGGGAGAGCAGGCACTA
CAC
Found at i:13605122 original size:26 final size:26
Alignment explanation
Indices: 13605084--13605136 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13605074 CCTATCTGAT
*
13605084 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13605110 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13605136 C
1 C
13605137 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13607707 original size:26 final size:26
Alignment explanation
Indices: 13607678--13607730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13607668 CCGGTCTGAT
* *
13607678 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13607704 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13607730 C
1 C
13607731 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13609304 original size:26 final size:26
Alignment explanation
Indices: 13609275--13609327 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13609265 CCAATCCGAT
* *
13609275 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGAGAATGAACTCCGTATG
13609301 CTTAAACTGAGAATGAACTCCGTATG
1 CTTAAACTGAGAATGAACTCCGTATG
13609327 C
1 C
13609328 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGAGAATGAACTCCGTATG
Found at i:13610563 original size:876 final size:875
Alignment explanation
Indices: 13607756--13612862 Score: 6108
Period size: 877 Copynumber: 5.8 Consensus size: 875
13607746 AAACGAGTGA
13607756 GCGGGCACT-CAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
1 GCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
**
13607820 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
65 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
13607885 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCATTTTCTATTTTTCACGATTTT
130 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* ** *
13607950 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAAGATTTTTGG-CCCAAACTTGG
195 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGG
* * *
13608014 TAGACGTAATCCTTGTATTTTTGTTGGTATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
13608079 AAGATTTTATGACCATTCGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
13608144 ACCTATAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTTGAGGTTTGATGATGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
13608209 GCCAATATAAGGGCCAACTACCAGCACCCATCGCACAACATGTGCGCACACCCCCCCTCGGCCCC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCTCGGCCCC
* * * * * * *
13608274 CCCGATTGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGGCAATGGTGCCCC
518 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * * * *
13608339 -AGTGAAGAAAAATGTGGCACCAGCATATGCCTGAGACCAGTATGTGCTG-CTGCAACCCTCGGT
583 GAGT--AGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGTC-GTAACCCTCGGT
* * *
13608402 CCGATCCGATCTGAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
644 CCGATCCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAACTAAACCCACGAAACGAGCGTGC
*** * * * **
13608466 GGGCACTCAGAAAGCCAAAGGGGTGGGATGCGCAAGCCGGGGATC-AGT-TGGTCCCCTTCTACG
708 GGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGTG
* * * * *** * * * * *
13608529 TGCTACCGATCCTACTACCACAAATGTAGGTCCGATCCAATCTGAGACTGGGAATGAACTCTGTA
772 TGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
13608594 TGCCTAACCCAACCGATGAAACGAGCGG-GTGAACGGGCGG
837 TGCCTAAGCCAACCGACGAAACGAGCGGCG-G-GCGGGCGG
*
13608634 GCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG-GGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
13608698 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
13608763 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTC
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
13608828 AAAACTTTTTACGGATCGAGATATTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
196 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGT
* * *
13608893 GGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAGAATTCAGCTAAAAACTCGAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
13608958 AGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGTAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
13609023 CCTGTAAAATCACAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
13609086 CCAATATAAGGGCCAAGTACCAGCA-CCATCGCACGTCATGTGCGCACA----------CCCCCC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCC
* * * *
13609140 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCCGCGATGCTCTGACAATGGTACCCCGAT
521 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-
* * * *
13609205 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGTAACCCTCGGTCCAAT
585 GTAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGAT
*
13609270 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGAGAATGAACTCCGTATGCCTAAGTC
649 CCGATCTTAGACTGGGAATGAACT-C---TG-------T----ATG----CC-TA--ACT-A---
* * * * ** **
13609335 AACCCATGAAACAAGTGTGCGAGCGTTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
688 AACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC
* * * ** * * * * *
13609400 GCTCAGGTTCCCCTCTACGTGCTACCGATCCTGCAGCCGCAACCCTCGATCCAATCTGACCTTAG
753 GATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAG
* * *
13609465 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGAGCGGACGGGCGG
818 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGCGG
* *
13609524 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
13609589 TTTAGCCACATCTTCACATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
13609654 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGTCTCGTTTTCTATTTTTCATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
13609719 GAAACTTTTTACGGTTCGAGATTTTTTAAAGTTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGT
196 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGT
* *
13609784 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* **
13609849 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACAC-TTAATGGCTACTGATAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
13609913 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
13609978 CCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCT-GGCCCCCCC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCC
* *
13610042 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGAC
521 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-
* * *
13610107 GCTA-AAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGG
585 G-TAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGA
* * *
13610171 TCCGATCTTAAACTGGGAATGAACTCTATATGCCTAACTAAACCCACGAAACGAGCGTACGGGCA
648 TCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAACTAAACCCACGAAACGAGCGTGCGGGCA
* * *
13610236 TTCAGCCGGCCAGAGCGGTGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTAT
713 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTAT
* * * * *
13610301 GGATCCGGCTGCCGCAAGCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
778 CGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * **
13610366 AGCCAACCGACAAAATGAGCAGGCGGGTTGGCGG
843 AGCCAACCGACGAAACGAGC-GGCGGGCGGGCGG
* * * *
13610400 GCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAGGCCGTGTATCGATAGGGTGGTACGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
13610465 TTTAGGCACATCTTCATATTTTTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
13610530 GTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATATTTCAAGAATTTG
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
13610595 GAAACTTTTTACAGTTCGGGATTTTTTAAACTTTTTT-TGAAAGAGTTTTGGCCCCAACCTTGGT
196 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGT
*
13610659 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
13610724 CGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAACGGCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
13610789 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG-GGTTTGACGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
13610853 CCAATATGAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTCGGCCCCCTC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCC
* * ** * *
13610917 GATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTTGATGATAGTGCCCCGAT
521 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-
* * * **
13610982 GAAGAAAAATGCGGCACCAGCACATGCTCGAGTCCAGCATCTGCTACCGTAACCCTCGGTCCGAT
585 GTAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGAT
* * * * ** * * * ** **
13611047 CTGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGA---ATGAACTCCA-TATGC-CT
649 CCGATCTTAGACTGGGAATGAACTCTGTATGCCTA-ACT-AAACCCACGAA-ACGAGCGTGCGGG
* * * ** * * * * * * *
13611107 AAGTCAACCCACGAAACGAGCGTACGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTGTA
711 CACTCAGCCGGCCAGA-G-GGGT--GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTG
* * * * * *
13611172 TGTTGTCGATCCTGCTGCCGCAACCCTCTG-TCTGGTCTGATCTTACACTGGGAATGAACTCCGT
772 TGCTATCGATCCTGCTGCCGCAACCCTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCCGT
*
13611236 ATGCCTAACCCAACCGACGAAACGAATG-GGCGGGCGGGCGG
836 ATGCCTAAGCCAACCGACGAAACG-A-GCGGCGGGCGGGCGG
* * *
13611277 GCAGGCACTATGCCGGCCAGCGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
13611342 TTTAGGCACATCTTTATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
13611407 GTCCCTTAAGCCTTCGCGTCG-AGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTT
131 GTCCCTTAAGCCTTCACGT-GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
13611471 TGAAACTTTTTGCGGTT-TATTATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
195 TGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTG
* *
13611535 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
13611600 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACATTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
13611665 AACCTGTAAAATCTCAAATGCTCTTTAAGCGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
13611730 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCAGCCCA
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTC-G----
* * * * * *
13611795 CCGATCGCCAGAACCCCAATGCCGTCGGTACTCCAATGTCGTCGGTTAGGTTCTCCGACGATGCT
513 --G--C-CC----CCCCGAT--CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT
* * * * *
13611860 CCGACGATGGTGCCTC-AGTGAAGAAAAATGTGGCACCAACACAAGCCTGAGCCCAGTATGTGCT
567 CCGACGATGGTGCCCCGAGT--AGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCT
*
13611924 GTCTTAACCCTCGGTCCAGTCCGATCTTTGACTGGGAATGAACTCGTATGCTTAGACTGGGAATG
629 GTCGTAA-CC-C--T-C-G---G-TC-----C---G-AT---C-CG-AT-CTTAGACTGGGAATG
* * * * * ** *
13611989 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAGCCGGCCAGTGGGGTGG
669 AACTCTGTATGCCTAACTAAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGG
* * * * * * * *
13612054 GATGCGCATGCCAGGGATCG-GCTGGGTCCCCCTCTGTGTGCTGTTGATCCTGGTGCTGTAACCC
734 GATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCC
* * *
13612118 T-TAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAG
798 TCGA-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
*
13612182 CGGACGGGCAGGCGG
862 CGG-CGGGCGGGCGG
* * * * * * ** * *
13612197 GCAGGCATTACGTCGACTAGAGAGATGGGATGCATAAGCCATGGATTGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** * *
13612262 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATTTCATGTAAATTCATATAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
13612327 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
13612392 GAAACTTTTTACGATTCGAGATTTTTTAAACTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTTGT
196 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGT
* * * * * * *
13612456 AGACATGATCTTTGTGTTATTGTTGGCATGCACAAATAAATTCAGATAAAAACTTGAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
13612521 AGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAACACTTTAATGGCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
13612586 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
13612651 CCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCC-CGGCCGCCCC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCC
** * * ** *
13612714 GATCACCGAAACCCCAATGCCGTCGGTCAGGCTCTCCGGCGATGCTCCGGTGATAGTGCCCCGAC
521 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-
* * * * * * *
13612779 GAAGATAAATTCGACACTAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCGAT
585 GTAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGAT
*
13612844 -CGAATCTTAGATTGGGAAT
649 CCG-ATCTTAGACTGGGAAT
13612863 AACCTTCGTA
Statistics
Matches: 3647, Mismatches: 451, Indels: 265
0.84 0.10 0.06
Matches are distributed among these distances:
863 135 0.04
864 4 0.00
865 1 0.00
867 1 0.00
868 1 0.00
873 9 0.00
874 14 0.00
875 381 0.10
876 459 0.13
877 531 0.15
878 397 0.11
879 71 0.02
880 2 0.00
881 8 0.00
882 6 0.00
883 4 0.00
885 2 0.00
887 3 0.00
888 1 0.00
889 54 0.01
890 192 0.05
891 326 0.09
892 29 0.01
893 21 0.01
895 7 0.00
896 3 0.00
897 86 0.02
898 4 0.00
899 3 0.00
900 83 0.02
901 6 0.00
902 151 0.04
903 2 0.00
906 2 0.00
907 3 0.00
909 1 0.00
912 1 0.00
915 2 0.00
916 3 0.00
917 4 0.00
918 1 0.00
919 262 0.07
920 318 0.09
921 5 0.00
922 32 0.01
923 9 0.00
924 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCC
GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAG
TAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGATCC
GATCTTAGACTGGGAATGAACTCTGTATGCCTAACTAAACCCACGAAACGAGCGTGCGGGCACTC
AGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTATCGA
TCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGCGGCGGGCGGGCGG
Found at i:13614743 original size:8 final size:8
Alignment explanation
Indices: 13614711--13614802 Score: 68
Period size: 8 Copynumber: 11.4 Consensus size: 8
13614701 TTGAAATAAA
*
13614711 ATAATATG
1 ATAATATT
13614719 ATAATATT
1 ATAATATT
13614727 ATATTATATT
1 ATA--ATATT
13614737 ATAATATT
1 ATAATATT
13614745 A-AATA--
1 ATAATATT
13614750 ATAATTATT
1 ATAA-TATT
13614759 ATAATATT
1 ATAATATT
*
13614767 ATTATTATTT
1 A-TAATA-TT
*
13614777 TTAATATT
1 ATAATATT
13614785 -TAATAATT
1 ATAAT-ATT
13614793 A-AATATT
1 ATAATATT
13614800 ATA
1 ATA
13614803 TTAAATTAGT
Statistics
Matches: 69, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
5 1 0.01
6 2 0.03
7 14 0.20
8 30 0.43
9 12 0.17
10 10 0.14
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (8 bp):
ATAATATT
Found at i:13614766 original size:40 final size:39
Alignment explanation
Indices: 13614710--13614802 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 39
13614700 TTTGAAATAA
*
13614710 AATAATATGATAATATTA-TATTATATTATAATATTAAAT
1 AATAATATTATAATATTATTATTAT-TTATAATATTAAAT
* *
13614749 AATAATTATTATAATATTATTATTATTTTTAATATTTAAT
1 AATAA-TATTATAATATTATTATTATTTATAATATTAAAT
13614789 AATTAAATATTATA
1 AA-T-AATATTATA
13614803 TTAAATTAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
39 5 0.11
40 26 0.55
41 14 0.30
42 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (39 bp):
AATAATATTATAATATTATTATTATTTATAATATTAAAT
Found at i:13614929 original size:26 final size:26
Alignment explanation
Indices: 13614900--13614953 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13614890 ACCGGTCTGA
*
13614900 GCTTAGACTGGGAATAAACTCTGTAT
1 GCTTAGACTGGGAATAAACTCCGTAT
*
13614926 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATAAACTCCGTAT
13614952 GC
1 GC
13614954 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATAAACTCCGTAT
Found at i:13615817 original size:26 final size:26
Alignment explanation
Indices: 13615788--13615840 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13615778 CCAATCCGAT
*
13615788 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13615814 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13615840 C
1 C
13615841 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13616713 original size:26 final size:26
Alignment explanation
Indices: 13616684--13616739 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
13616674 CCGGTCCGAT
13616684 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
13616710 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
13616736 CTTA
1 CTTA
13616740 AATCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:13617294 original size:893 final size:892
Alignment explanation
Indices: 13614831--13619358 Score: 5820
Period size: 895 Copynumber: 5.1 Consensus size: 892
13614821 GTGCCCTAGT
* * * *
13614831 GAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCACGTGCTACCGCAACCCTCAGACCGGT
1 GAAGAAAAATACGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
13614896 CTGAGCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
65 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
13614961 AACCCAC-AAA-A--------CG---AG-CGACCAGAGGGGTGGGATGC-CGAAGTCGGGGATCG
130 AACCCACGAAACAGCGTCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCAC-AACTCGGGGATCG
** * * * * * *
13615011 ACCGGGTCCCCCTCCGTGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTAATCTTACA
194 GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGATCTGGTCTAATCTTAGA
* *
13615076 TTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGGGCAGGCGGGCGGGCA
259 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCG-A----C---CGGGCGGGCA
*
13615141 CTACGCC-GACCAGAGAGACGGGATGCGCAAGTCGTGCATCGATAGGGTGGTAGGTGGGTTTAGG
316 CTACGCCAG-CCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
13615205 TACATCTTCATATTTTTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCT
380 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
13615270 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
445 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * *
13615335 TTTTACGGTTCAAGATTTTTTATAATTTTTTCGGAAGGAGTTTTAGCACCAAACTTGGTAGATGT
510 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGT
* ** * * *
13615400 GATCCTTGTATTTTTTTTGGCATTTATAAAAAAATTCAGCCAAAAACTCGAAGTGTATAAGATTT
575 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
13615465 TGTGACTATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
640 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
13615530 AAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATA
705 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
13615595 TAAGGGCCAAGTACCAGCAGCCATCGCACATCAT-TCGCGCACACCCCCCAGCCCCCCCGATCGT
770 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-GCGCACACCCCCCGGCCCCCCCGATCGT
* * * *
13615659 CGGAACCCCAATGACGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC-AGC
834 CGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-C
* * * **
13615718 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGAAACCCTCGGTCCAAT
1 GAAGAAAAATACGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
13615783 CCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
65 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
13615848 AACCCACGAAATGAGCGTGTGGGCGTTCAGCGGGCCAGAGTGGCGGGATGCGCAAGC-CGGGGAT
130 AACCCACGAAA-CAGCGT-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAA-CTCGGGGAT
* * * * * *
13615912 TGGTCGGGTCCCCCTCTGCGTGCCACCGATCCTGCTACCACAACCC-TCAGTCTGATCCATTCTT
192 CGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGA-TCTGGTCTAATCTT
* * * * *
13615976 AGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGTAGA-CGGGCAGGCAGTAC
256 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-CGACCGGGCGGGCACTAC
* * * * *
13616040 GTCGGTCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
320 GCCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
13616105 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGC
385 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** **
13616170 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATTATTTTTGAAACTTTTTA
450 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA
* * ** * *
13616235 CTGTTCGAGATTTTTTAAAATTATTTCGGGTGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCC
515 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCC
* * * *
13616300 TTTTATTTTTGTTCGTATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGA
580 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
13616365 CCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAGAATC
645 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
13616430 TCGAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
710 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
13616495 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAA
775 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGAAA
* * * *
13616560 CCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTTCGACAATGGTGCCCCAAC
839 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * *
13616614 GATGAAAATTACGGCACCAGCACATGTCCGAGCCCAGCATGTGCTGCCGCAATCCGCGGTCCGGT
1 GAAGAAAAATACGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
13616679 CCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCTTAAATC
65 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
13616744 AACCCACGAAACGATCGTCCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAACTCGAGGATC
130 AACCCACGAAAC-AGCGT-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAACTCGGGGATC
** * * * * *
13616809 GGTCGGGTCCCCCTCTATGTGTTATCGGAT-CTACTACCACAACCCTTGATGTGGTCTGATCTTA
193 GGTCGGGTCCCCCTCTGCGTGCTA-CCGATCCTGCTACCACAACCCTTGATCTGGTCTAATCTTA
13616873 GACTGGGAATGAACTCCGTAT-CCTAAGCCAACCGATGAAACGAGCGACCGGGCGGGCACTACGC
257 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGACCGGGCGGGCACTACGC
** * *
13616937 CAG-CTTAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCT
322 CAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** * *
13617001 T-ATATTTCTGTGTGCCAATGCCATTTTTATTGCTTGTAAATTTATACAATGGTCCCTTAAGCCT
387 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
13617065 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACAATTTTCAAAACTTTTTACG
452 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
* * * * *
13617130 GTTTGAGATTTTTCAAAATTTTTTCGGAAGGAGTTTCAGCCCCAAACTTGGTGGACGTGATCCCT
517 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTT
* * * * *
13617195 GTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCTAAGTTTATAAGATTTTGTGACC
582 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
13617260 ATTTGAAAAAAGTGTCCCCATTTTAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
647 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
13617325 AAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGGTGAGGGATAGGGGACCAATATAAGGGC
712 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
13617390 CTAGTACCAGCACCCATCACACATCATGTGCGCACA--------CCCCCCTGATCATCGAAACCC
777 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCC
* * * **
13617447 CAATGCCGTCGGCCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGT
842 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * *
13617498 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA-CATGTGTTGCCGCAACCCTCGGTTCGGT
1 GAAGAAAAATACGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* *
13617562 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTA-AC------TCAAC-CC--A----T--G--
65 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** ** ** *
13617609 AA---AC-AAGCA-TG-CGGGCGCTCAGCTGGCCAGAGGGGCGCTATGCGTATGTCGGGGATCAG
130 AACCCACGAAACAGCGTCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAACTCGGGGATCGG
* * * * * * *
13617668 TCGGGTCCCCCTCTACCTGCTTCCAATCCTGCTACCACAACCCTTGGTCTGAT-TCGATCTTAGA
195 TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGATCTGGTCT-AATCTTAGA
**
13617732 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGTGGGCGGGCACTAC
259 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC--G-A-CCGGGCGGGCACTAC
* *
13617797 GTCAGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
320 GCCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
13617862 CTTCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
385 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
13617926 CTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTT-AGAAACTTTTT
450 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA-AAACTTTTT
* * *
13617990 ACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATC
514 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATC
* * *
13618055 CTTGTATTTTTGTTGGCATACACAAAACAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTG
579 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
13618120 ACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGCAGCAAATCTGTAAAAT
644 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
13618185 CTGAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
709 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
13618250 GGCCAAGTACCAGCACCCTTGGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGAAA
774 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAA
*** * * *
13618315 CCCCAATGCCTTTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTTCCCCGAT
839 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * *
13618369 GAAGAAAAATGCGGCACAAGCACATGCCTGAGCCTAGCATGTGCTGTCGCAACCATCGGTCCGGT
1 GAAGAAAAATACGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* *
13618434 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTC
65 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * ** *
13618499 AATGCACGAAACAAGCATGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATTTGCA-AGC-CGGGGA
130 AACCCACGAAAC-AGCGT-CGGGCGCTCAGCCGGCCAGAGGGGCGGGA--TGCACAACTCGGGGA
* * * * * * * * *
13618562 TCGGTCGGGTTCCCCTCTGCCTGCTGCTGAACCGGCTACCGC-ACCCTTCAGTCTGGCCTAATCT
191 TCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGA-TCTGGTCTAATCT
* * * * ** ** *
13618626 TAGAGTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAATGAGCGGGCGGGTAGGCATTAC
255 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGACCGGGCGGGCACTAC
** * * * * *
13618691 GCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAAATGGTGTTAGGTGGGTTTAGGCACAT
320 GCCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * * *
13618756 CTTCATATTTCTGCTTGCTAGTGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGG
385 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
13618821 CTTCAAGTGAAGTTTCATGGCAAGACGACTCG-TTTCTATGTTTCACGATTTTTAAAACTTTTTA
450 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA
* * * * *
13618885 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTATACATGATCC
515 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCC
13618950 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTG
580 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTG
*
13619015 ACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
644 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
** *
13619080 CTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
709 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
13619145 GGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCGGCCCCCCCGATCGTCGTA
774 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGAA
* * *
13619210 ACCCCAATGCCGCCGATCAAGTTCTCCGACGATGCTCGGACGATGGTGCCCCGAC
838 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * *
13619265 GAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGTATGTGTTGCCGTAACCCTCGGTCCGGT
1 GAAGAAAAATACGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* *
13619330 CTGATCTTAGATTGGGAATGAACTCCGTA
65 CCGATCTTAGACTGGGAATGAACTCCGTA
13619359 CGCCTAAGCC
Statistics
Matches: 3170, Mismatches: 386, Indels: 161
0.85 0.10 0.04
Matches are distributed among these distances:
856 4 0.00
857 106 0.03
858 24 0.01
859 1 0.00
860 2 0.00
861 4 0.00
862 20 0.01
863 421 0.13
864 20 0.01
865 2 0.00
869 1 0.00
870 2 0.00
871 95 0.03
872 57 0.02
873 3 0.00
875 1 0.00
876 4 0.00
879 4 0.00
880 2 0.00
882 3 0.00
883 57 0.02
884 91 0.03
886 1 0.00
887 123 0.04
888 5 0.00
890 3 0.00
893 384 0.12
894 282 0.09
895 741 0.23
896 450 0.14
897 14 0.00
898 115 0.04
899 4 0.00
900 3 0.00
902 2 0.00
903 117 0.04
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GAAGAAAAATACGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACAGCGTCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAACTCGGGGATCGGT
CGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGATCTGGTCTAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGACCGGGCGGGCACTACGCCAGC
CAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC
GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAAT
GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
Found at i:13618468 original size:26 final size:26
Alignment explanation
Indices: 13618439--13618491 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13618429 CCGGTCCAAT
*
13618439 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
13618465 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
13618491 C
1 C
13618492 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:13620042 original size:715 final size:705
Alignment explanation
Indices: 13618622--13620066 Score: 2095
Period size: 715 Copynumber: 2.0 Consensus size: 705
13618612 GTCTGGCCTA
* * * *
13618622 ATCTTAGAGTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAATGAGCGGGCGGGTAGGCA
1 ATCTTAGACTGGGAATGAACTCCGTACGACTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCA
* * *
13618687 TTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAAATGGTGTTAGGTGGGTTTAGGC
66 CTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAAATGGTGGTAGGTGGGTTTAGGC
* * * * *
13618752 ACATCTTCATATTTCTGCTTGCTAGTGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
13618817 AAGGCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTCTATGTTTCACGATTTTTAAAACTTT
196 AAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTCAATGTTTCACGATTTTTAAAACTTT
* * *
13618882 TTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTATACATGA
261 TTACGGTTCGAGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
13618947 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTT
326 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTT
13619012 GTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
391 GTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
13619077 AATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
456 AATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCAACGTTTGATGAGGGATAGGGGGCCAATAT
* *
13619142 AAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCGGCCCCCCCGATCGTC
521 AAGGGCAAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCACCGG-CCCCCCGATCGCC
*
13619207 GTAACCCCAATGCCGCCGATCAAGTTCTCCGACGATGCTCGGACGATGGTGCCCCGACGAAGAAA
585 GGAACCCCAATGCCGCCGATCAAGTTCTCCGACGATGCTCGGACGATGGTGCCCCGACGAAGAAA
* * * * *
13619272 AATGCGGCACCAGCACATGCTCGAGCCCAGTATGTGTTGCCGTAACCCTCGGTCCGGTCTG
650 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT-C---C-G
* * *
13619333 ATCTTAGATTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTACGACTAAGCCAACCGACGAAACGA----GCGGGCGGGCA
* * *
13619398 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGCTC-AATTGGGTGGTAGGTGGGTT
62 GGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAAAT-GGTGGTAGGTGGGTT
*
13619462 TAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
126 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
13619527 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCAAT-TTATCATGATTTTTG
191 CCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCG-TTTCAATGTT-TCACGATTTTTA
*
13619591 AAACTTTTTACGGTTC-AGGATTTTTTAAAATTCCTTT-GGAAGGAGTTTTGGCCCCAAACTTGG
254 AAACTTTTTACGGTTCGA-GATTTTTTAAAATT-CTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* *
13619654 TAGACGTGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTA
317 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTA
*
13619718 CAAGATTTTGTGACCATTTGAAAAAAGTGTCTCC-ATTTCAGATACTTTAATGGCTACTGGCAGC
382 CAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCTATTTCAGACACTTTAATGGCTACTGGCAGC
**
13619782 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAACGTTTGATGAGGGATAGG
446 AAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCAACGTTTGATGAGGGATAGG
* * * *
13619847 GGGCCAATATAAGGGC-AAGTATCGGCACTCATCGCACATGATATGCGCACACCCC-CCGG-CCC
511 GGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCACCGGCCCC
* * * * * * *
13619909 CCTATCGCCGGAACCCC-ATGCCATCTG-TCAGGTTCTCCGGCGATGGTCCGG-TGATGGTGCCC
576 CCGATCGCCGGAACCCCAATGCC-GCCGATCAAGTTCTCCGACGATGCT-CGGACGATGGTGCCC
* * *
13619971 CGACGAAGAAAAATGTGGCACCGGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGATC
639 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C--T-
13620036 CGGTCCG
699 CGGTCCG
13620043 ATCTTAGACTGGGAATGAACTCCG
1 ATCTTAGACTGGGAATGAACTCCG
13620067 CATGCTTAGA
Statistics
Matches: 661, Mismatches: 56, Indels: 35
0.88 0.07 0.05
Matches are distributed among these distances:
710 104 0.16
711 71 0.11
712 1 0.00
713 4 0.01
714 39 0.06
715 313 0.47
716 126 0.19
717 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (705 bp):
ATCTTAGACTGGGAATGAACTCCGTACGACTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCA
CTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAAATGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTCAATGTTTCACGATTTTTAAAACTTT
TTACGGTTCGAGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCAACGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCAAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCACCGGCCCCCCGATCGCCG
GAACCCCAATGCCGCCGATCAAGTTCTCCGACGATGCTCGGACGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCG
Found at i:13620097 original size:26 final size:26
Alignment explanation
Indices: 13620045--13620097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13620035 CCGGTCCGAT
*
13620045 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
13620071 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
13620097 C
1 C
13620098 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:13621890 original size:26 final size:26
Alignment explanation
Indices: 13621861--13621913 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13621851 CCGATCTGAT
* *
13621861 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13621887 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13621913 C
1 C
13621914 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13622366 original size:902 final size:902
Alignment explanation
Indices: 13619315--13622676 Score: 4862
Period size: 914 Copynumber: 3.7 Consensus size: 902
13619305 GTGTTGCCGT
* * * *
13619315 AACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
*
13619380 CGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGCT
66 CGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
13619441 CAATTGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
13619506 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
13619571 TCAATTTATCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTCCTTTGGAAGGA
261 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTCTTTTGGAAGGA
** * *
13619635 GTTTTGGCCCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCAACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
13619700 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGATACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
13619765 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAC
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAC
* * * * *
13619830 GTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTATCGGCACTCATCGCACATGATATGCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** * *
13619894 CACACCCCCCGG-CCCCCTATCGCCGGAACCCC-ATGCCATCTGTCAGGTTCTCCGGCGATGGTC
585 CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* * * *
13619957 CGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCGGCACATGCCCGAGCCCAGCATGTGCTAT
650 TGGTGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * *
13620022 CGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGA
715 CGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
13620087 ACTCCATATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG
780 ACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * * *
13620152 ATGCACAATCCAGGGATCAACCGTGTCCCCCTTTGTGTGCTACTGCTGCTGCTGCCAC
845 ATGCGCAAGCCAGGGATCGACCGTGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCAC
* * * * *
13620210 AACCCTTGGTTTGGTCTGATCTTACACAGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* *
13620275 CGAGTGGGCGGGTGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
13620340 CGAAAGGGTGGTAGGTGGGTTTAGACACATCTTCGTATTTCTACATGCCAATGCCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* *
13620405 CTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
13620470 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATT-TTTTCGGAAGGA
261 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTCTTTT-GGAAGGA
13620534 GTTTTGGCAACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCAACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
13620599 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* ***
13620664 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGGG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAC
* * *
13620729 GTTTGATGAGGGATAGGGGCCCGATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * * **
13620794 CACACCCCCCGGCCCCCCGATCATCGGAACCCAAATGCCGCCAGTCAGGTTCTCCGATGATGCTC
585 CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* *
13620859 TGAT-ATTGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAAGCCCAAGCC
650 TGGTGA-TGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCC--G----AGCCC-AG--
* * *
13620923 CAACATGTGCTGCCGCAACCCTCGGTCC-AGTCTGATCTTCGACTGGGAATGAACTCCGTATGCT
705 ---CATGTGCTACCGCAACCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
13620987 TAGACTGAGAATGAACTCCGTATACCTAAGTTAAACCATGAAACAAGCGTGCGGGCGCTCAGCCG
766 TAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** *** * *
13621052 GCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGACCGAGTACAACTCTCCATGCTGCCGATCTTG
831 GCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGTGTCCCCCTCTGTGTGCTACCGATCCTG
13621117 CTGCCAC
896 CTGCCAC
* * * * *
13621124 AACTCTCGGTCTGATCTGATCTTAGACTGTGAATGAAGTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* * * * *
13621189 CGAGCGGACGGGCGTGCGGGCGGTCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGAT
66 CGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*** *
13621254 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCGATGCCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* *
13621319 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCATGAAGTTTCATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
13621384 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGAG
261 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTCTTTTGGAAGGAG
*
13621449 TTTTGGCAACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATTCACAAAAAAATTCAGC
326 TTTTGGCAACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
13621514 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
13621579 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGG
456 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAACG
*
13621644 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGC
521 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
**
13621709 ACACCCCCCGGCCCCCCGATCGCCAAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCT
586 ACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCT
* * * * *
13621774 GGTGATGGTGCCTCGATGAAAAAAAATGTGGCACCTGCACATGCCCGTGCCCAGCATTTGCTACC
651 GGTGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * * *
13621839 GTAACCCTTGATCCGATCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA
716 GCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
13621904 CTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
781 CTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
** * * **
13621969 TGCGCAAGCCAGGGATCGATTGTGTCCCCCACTGTGTGCTACCGATCCTGCTACTGC
846 TGCGCAAGCCAGGGATCGACCGTGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCAC
* ** * * * *
13622026 AACCCTTGGTCCAGT-TCGATCTTAGATTGGGAATGAACTTCGTATGCCGAAGCCAATCGACAAA
1 AACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* * * *
13622090 ACGAGTGGGCGGACGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGTCGTGGA
65 ACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
13622155 TCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTCCATGCCAATGCCATTTTTTTG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* *
13622220 GCTTATAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
13622285 TTCTATTTTTCATGATTTTTTAAACTTTTTG-GGATTCGAGATTTTTTAAAATTCTTTTGGAAGG
260 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TTCGAGATTTTTTAAAATTCTTTTGGAAGG
* * ** * *
13622349 ATTTTTGTCCCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
324 AGTTTTGGCAACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
13622414 ACTAAAAACTCAAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCTCCATTTTAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
** * *
13622479 TTAATAACTACTGGAAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * *
13622544 CATTTGATGAGGGATACGGGGCCAAT-TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
519 CGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
*
13622608 GCACACCCCCCCAGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
584 GCACA-CCCCCC-GG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
13622673 GCTC
646 GCTC
13622677 AAGCGATGCT
Statistics
Matches: 2194, Mismatches: 242, Indels: 53
0.88 0.10 0.02
Matches are distributed among these distances:
895 59 0.03
898 3 0.00
899 444 0.20
900 38 0.02
901 61 0.03
902 717 0.33
903 3 0.00
904 51 0.02
907 2 0.00
908 9 0.00
909 2 0.00
912 1 0.00
914 799 0.36
915 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
CGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTCTTTTGGAAGGAG
TTTTGGCAACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAACG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCT
GGTGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
GCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCCAGGGATCGACCGTGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCAC
Found at i:13624399 original size:26 final size:26
Alignment explanation
Indices: 13624370--13624422 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13624360 CCGGTAGGAT
*
13624370 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13624396 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13624422 C
1 C
13624423 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13625663 original size:886 final size:889
Alignment explanation
Indices: 13623493--13629825 Score: 7637
Period size: 905 Copynumber: 7.1 Consensus size: 889
13623483 CCGATCCAAT
* *
13623493 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
13623558 CGGCCAGAGGGTCGGGATGCGCAAG-TCAGGGATTGGCCAGGG-CCCCCTTTGCATGTTGCCGAT
66 CGGCCAGAGGG-CGGGATGCGCAAGCT-GGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGAT
** * ** * * *
13623621 CCTGCTATCGCAA-CCTTCAATCCGGT-TCGATCTTGGATTGGGAATGAACTCCATATGCCTAAG
128 CCTGCTGCCACAACCCTT-GGTCCAGTCT-GATCTTAGACTGGGAATGAACTCCATATGCCTAAG
* **
13623684 CCAACCGACGAAACGAGCGGGCGGGCAGGCGGGAGGGCACTTTGCCGGCCAGAGAGACGGGATGC
191 CCAACCGACGAAACGA----GCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
13623749 GCAAACCGTGTATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAAT
252 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
13623814 GCCA-TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCA
317 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
13623878 AGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATT
382 AGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTCT-GTTCGGGATTTTTTAAAATT
* ** ** *
13623943 TTTTCGGAAGGAGTTTTGGCCCCAAACTTTTTAGACATGATCCTCATATTTTTTTTGGCATGCAC
446 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* * *
13624008 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTGTGTGGCCATTTAAAAAAAGTGTCCCCA
511 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
13624073 TTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
* **
13624138 TGAGTTCTCAAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTT
640 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
13624203 ACATCATGTGTGCACACCCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCTGCCGGTCAGGTT
705 ACATCATGTGCGCACA------C--CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* ** * * * **
13624268 CTCCGATGATGCTTCGACGATGGTGCCCCGGCGAAGAAAAATCCTACACCAGCACATGCCCGAGC
762 CTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * ** *
13624333 CCAGCATGTGCTACCGCAACCCTTGATCCGGTAGGATCTTAGTCTGGGAATGAACTCCGTATG
827 CCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13624396 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACCAGTGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** ** ** * *
13624461 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATTGATCATGTCCTGCTCTGTATGCTGTCAATCC
66 CGGCCAGA-GGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** **
13624526 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCGGAAGCCAA
130 TGCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
*
13624591 CCGACGAAACGAGCGGGC-GGACGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCC
195 CCGACGAAACGAGCGGGCAGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
13624655 GTGGATCGATAGGGTGGTCGGTGGGTTTGGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
13624720 TTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGAT
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* * *
13624785 TCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTCCTGTTCGGGATTTTTTAAAATTTTTTTGA
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CTGTTCGGGATTTTTTAAAATTTTTTTGG
** *
13624850 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
13624915 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGCCCCCATTTCAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
13624980 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGTGTGAGTTCT
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCT
* *
13625045 CAAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATG
648 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * **
13625110 TGCGCACA-CCCCCCCGATCTTCAGAA-CCTAATGCCGCCGGTCAGGTTCTTTGGTGATGCTTTG
713 TGCGCACACCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCG
* ** * * * * *
13625173 GCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACGTGCCTGAGCCTAGCATGTGCTGTCA
778 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CC
* *
13625238 G-AACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATG
842 GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13625285 CTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACCAAATGAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
13625349 CGGCTAGAGGG-GGGACGCATAAGCTGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCT
66 CGGCCAGAGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* *
13625413 GCTGTCACAACCCTTGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
131 GCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * * *
13625478 TGACGAAACGAGCGGGCAGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCAT
196 CGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
13625543 GGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGTCAATGCCATTTTT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
13625608 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
326 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
* * * * * *
13625673 GTTTTCAATTTTTAACGATTTTTGAAACTTTTTGC-GATTCAGGATTTTGTAAAATTTTTTCGGA
391 GTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CTG-TTCGGGATTTTTTAAAATTTTTTTGGA
* * * *
13625737 AGGAGTTTTGGCCCCAAACATAGTAGACATGATCCTTGTATTTTTCTTTGCATGCACAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
13625802 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCGCCATTACAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
** *
13625867 ACTTTAATGGCTACTGATAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGTGTGAGTTCTT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC-T
* * * * *
13625932 GAA-GTTTAATGAGGGATAGGGGGCCCATATAAGGGTCAAGTACCAGCACCCATCGAACATCATG
648 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ***
13625996 TGCGGACACCCCCCGGCCCCTCGGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCAACGA
713 TGC-G-CA-CACCC--CCCC-C-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGA
* * * *
13626061 TGCTCCGATGATGGTGCCCTGATGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCAGCATGT
771 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
13626126 GCTGCTGCAACCCT-AG---G-T-C---C----A----G--T---CT--G-AT-
836 GCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
13626154 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATAAGCTTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * ** * * * *
13626219 CAACCAAAGGGGCAAGAAGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTGCGTGCTGTCGATCC
66 CGGCCAGA-GGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** *** * * * * *
13626284 TATTGCTGTAACCCTCGATTCGGTCTGATCTGAGACTGGGAATGAACTCCATATGCCTAAGCCAA
130 TGCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * *
13626349 CTGACGAAACAAGCGGG-TGGACGGGCAGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
195 CCGACGAAACGAGCGGGCAGG-C-GG--G-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
13626413 AGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
13626478 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTCAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
13626543 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
385 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CTGTTCGGGATTTTTTAAAATTTTT
* * *
13626608 TTGGAATGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGGATGCACAAA
449 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13626673 ACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13626738 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGA
*
13626803 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACA
643 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13626868 TCATGTGCGCACACCCCCCTGGCCCCCCCGATCATCGGAAGCCCAATGCCGTCGGTCTGGTTCTC
708 TCATGTGCGCACA-----C---CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
*
13626933 TGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
765 TGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
13626998 ACATTTGCTGCCACAACCCT---T--G----G----T---CT--G---G---TCCG-AT-
830 GCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
13627032 CTTAGACTGGTAATGAACTCTGTATGCCTAAGTTAACCCACAAAATGAGCTTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** *
13627097 CGGCCAGAGGGGCGGGATGCGCAAG-TCGGGGATCGGCCGGGTCCCCCTC-GACGTGCTGCAGAT
66 CGGCCAGA-GGGCGGGATGCGCAAGCT-GGGGATCGATCGGGTCCCCCTCTG-CGTGCTGCCGAT
* * * * * * *
13627160 CCTGTTGCTATAACCCTTGGTTCAGTCTGATCTGAGACTGGAAATGAACTCCGTATGCCTAAGCC
128 CCTGCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* ** *
13627225 AACCAACGAAA--A------AAACGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGC
193 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
13627282 CGTTGATCAATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
13627347 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGATGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
* *
13627412 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTG
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CTGTTCGGGATTTTTTAAAATTTTTTTG
* * * *
13627477 GGATGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
13627542 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
13627607 ACACTTTAATAGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGTTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTT
* * *
13627672 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACTCATCGCACATCA
646 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
13627737 TGTGTGTACACCCAACCCCCAGCCCCCCGATCGCCGGAACCGCAATGTCGTCGGTCAGGTTCCCT
711 TGTGCG--CA--C-A---CC--CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
* * ** * * * *
13627802 GGC-ATGCTCCGGCAATGGCACCCCGGCGAAGAAAAATGCCGCACCAGCACATGCTCGAGCCCAA
766 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
13627866 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
831 CATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13627925 CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACAAAACGAACGTTCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
13627990 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGA-GGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
13628055 TGCTGCCATAACCCTTGATCTAGTCTGATCTTAGACTTGGAATGAACTTCC-TATGCCTGAGCCA
130 TGCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAAC-TCCATATGCCTAAGCCA
* * * *
13628119 ACCGACGAAGCGAGCGGGCTGGCAGGCGGGCGGGCACTACGTCGGCCAAAGAGACAGGATGCGCA
194 ACCGACGAAACGAGC--G--GGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
13628184 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCCTCATATTTCTACGTGCCAATACC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
13628249 ATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
13628314 TGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
385 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTCT-GTTCGGGATTTTTTAAAATTTTT
* * ** * * * *
13628379 TTGGTAGAAGTTTTTACCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTCGGCATGTACAAA
449 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
13628444 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACAATTTGAAAAAAGTTTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13628509 CAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
* ** *
13628574 GTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGTCAAGTACCAGCACCCATCGCACA
643 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* **
13628639 TCATGTGCACACACACCCCCCGGCCCCCTCGATTTTCGGAACCCCAATGCCGTCGGTCAGGTTCT
708 TCATGTG--CGCACA----CC--CCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * *
13628704 CCGGTGATGCTCCGACGATGGTACCCCGAAGAAGAAAAATACGACACCAGCACATGCCCGAGCCC
764 CTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
13628769 AGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATG
829 AGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13628830 CTTAAACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
13628895 CGGCCAGAGAGGCGGGATGTGCAAGCCGGGGATCGA-CTAGGCCCCCCTCTACGTGCTACCGATG
66 CGGCCAGAG-GGCGGGATGCGCAAGCTGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * * * * *
13628959 CTACTACCGCAACCTTTAGT-CTGATCTAATCTTAGACTGGGAAAGAACTTCGTATGCCTAAGCC
129 CTGCTGCCACAACCCTTGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * * * *
13629023 AACTGACGAAATGAAC--G--GGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGC
193 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
13629084 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGGCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
13629149 TTTATGCCTTGTAAATTCATACAATGGTCCCTTAGGCTTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
* *
13629214 CTCGTTTTCTATTTGTT-AAGATTTTTGAAACTTTTT-TCGATTCAGGATTTTTTAAAATTTTTT
388 CTCGTTTTCTATTT-TTCATGATTTTTGAAACTTTTTCT-G-TTCGGGATTTTTTAAAATTTTTT
* * * *
13629277 CGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
450 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
13629342 AAATT-AGTTAAAAACTCGAA-CGCACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
** * * *
13629404 AGACACTTTAACAGCTACAGGCAACAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
* *
13629469 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACAT
644 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
13629534 CATGTGCGCACACCCCCCCTCGGCCCCCTTGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCT
709 CATGTGCGCACA-----CC-C--CCCCC--GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
*
13629599 CCT-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
764 -CTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
13629663 CAGTATGTGCTGCCGCAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATAAACTCTGTATG
828 CAGCATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13629725 CTTAGACTGGGAATGAACTCCATATGCCTAAGTGAACCCACGAAACGAGCTTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
13629790 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
66 CGGCCAGA-GGGCGGGATGCGCAAGCTGGGGATCGA
13629826 CCGCGTGGTA
Statistics
Matches: 4757, Mismatches: 553, Indels: 248
0.86 0.10 0.04
Matches are distributed among these distances:
866 478 0.10
867 72 0.02
868 40 0.01
869 14 0.00
870 57 0.01
871 6 0.00
872 114 0.02
873 4 0.00
874 1 0.00
875 3 0.00
876 383 0.08
877 78 0.02
878 285 0.06
879 2 0.00
880 5 0.00
882 3 0.00
883 2 0.00
885 2 0.00
886 562 0.12
887 9 0.00
888 59 0.01
889 132 0.03
890 20 0.00
891 4 0.00
892 12 0.00
893 181 0.04
894 155 0.03
895 350 0.07
896 18 0.00
897 272 0.06
898 4 0.00
899 183 0.04
900 287 0.06
901 1 0.00
902 2 0.00
903 178 0.04
904 47 0.01
905 732 0.15
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
CGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTCTGTTCGGGATTTTTTAAAATTTTTTTGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13628833 original size:26 final size:26
Alignment explanation
Indices: 13628804--13628856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13628794 CTGATCCGAT
* *
13628804 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13628830 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13628856 C
1 C
13628857 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:13629750 original size:26 final size:26
Alignment explanation
Indices: 13629699--13629751 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13629689 CCAGTCCGAT
**
13629699 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
13629725 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
13629751 C
1 C
13629752 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:13630562 original size:26 final size:26
Alignment explanation
Indices: 13630531--13630589 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
13630521 CAAGCCGGGG
13630531 ACCGATCGGGTCCCCCTCTGTGTGCT
1 ACCGATCGGGTCCCCCTCTGTGTGCT
*
13630557 ATCGATCGGGTCCCCCTCTGTGTGCT
1 ACCGATCGGGTCCCCCTCTGTGTGCT
13630583 ACCGATC
1 ACCGATC
13630590 CTGCAACCGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.10, C:0.37, G:0.25, T:0.27
Consensus pattern (26 bp):
ACCGATCGGGTCCCCCTCTGTGTGCT
Found at i:13632083 original size:26 final size:26
Alignment explanation
Indices: 13632054--13632103 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13632044 GTCCGATCTT
13632054 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
13632080 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
13632104 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:13633655 original size:26 final size:26
Alignment explanation
Indices: 13633626--13633678 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13633616 TCGGTCCGGT
13633626 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13633652 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13633678 C
1 C
13633679 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13635451 original size:26 final size:26
Alignment explanation
Indices: 13635400--13635452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13635390 CTGATCCGAT
*
13635400 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13635426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13635452 C
1 C
13635453 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13636316 original size:26 final size:26
Alignment explanation
Indices: 13636287--13636339 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13636277 CTGGTCTGAT
* *
13636287 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
13636313 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
13636339 C
1 C
13636340 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:13637030 original size:890 final size:884
Alignment explanation
Indices: 13632886--13637207 Score: 5339
Period size: 888 Copynumber: 4.8 Consensus size: 884
13632876 AGCATGTGCA
*
13632886 GCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** * * *
13632951 CGAAACGAGC---C-AACAGGCGGGCAATACACCGGCCAGAGAGACGGGGTGCGCAAGCCGTGGA
66 CGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * * **
13633012 TCGATAGGGTGATAGGTGGGTTTAGGCACAACTTCATATTTATGTGTGCCAATGATATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTTTGCGTGCCAATGCCATTTTTATG
**
13633077 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGATAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * * *
13633142 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTCAAATTTTTTCGGAAAGA
260 TTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * * * *
13633207 GTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTATAGAAAAATT-AG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
13633271 CTAAAAACTCGAAGTGTACAAATTTTGTGACCATTTG--AAAAGTGTCCCCTATTTCAGACCACT
390 CTAAAAACTCGAAGTGTACAAATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGA-CAC-
* * *
13633334 TCTTAACGGCTACTGGCAAACAATCCTGTAAAAATCTGAAATGCTC-TTAAGGGGGTGTGGAGCT
452 T-TTAATGGCTACTGGC-AGCAAACCTGT-AAAATCTGAAATGCTCTTTAAGGGGGTGT-GAG-T
* * *
13633398 TCTCAAGGGTTTGATGAGGGATATGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCGTACA
512 TCTCGA-GGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13633463 TCATGTGCGCACACCCCCCGGCCCCCTCGATCGTTGGAACCCCAATGCTGTCGGTCAGGTTCTCC
575 TCATGTGCGCACACCCCCC-GCCCCCT-GATCGTCGGAACCCCAATGCT-AC---C-GG---TCA
* *
13633528 TGTGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
630 AGT--T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * **
13633593 CATGTGCAGCCGCAACCCTCGAT-TCGGTCCGGTCTTAGACTGGGAATGAACTCCGTATGCTTAG
692 CATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAG
* ** * *
13633657 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCGTGAAACGAGTGTGGGGGCGCTCAGCCGGCC
756 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * ** * * *
13633722 AGAGGGGCGAGATGCGTAAGCTGGAGATCGA-CTAGGTCCCCCTCTACGTGCTGCCCAT-CTGCT
821 AGAGGGGCGGGATGCGCAAGCCAGCGATCGATC-GGGTCCCCCTCTACGTGCTGCCGATCCTGCT
* * * *
13633785 GCTGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCGAACCGA
1 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * **
13633850 CGAAACAAGCGAAAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCTA
66 CGAAACGAGC----GGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
13633915 TGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
127 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTTTGCGTGCCAATGCCATTTT
* * * *
13633980 TATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCATCACGTGAAGTTTAATTGCAAGACGACT
191 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * ** * *
13634045 CGTTTTCTATCTTTCACGATTTTCAAAACTTTTTGCAATTTGGGATTTTTTAAAATTTTTTCGGA
256 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
* *
13634110 AGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGGATTTTTGTTGGCATGCACAAAAAAAT
321 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
13634175 TTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGAC
386 TCAGCTAAAAACTCGAAGTGTACAA-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
13634239 ATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCT
450 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
13634304 TGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCAATCGCATAT-ATG
515 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *** * **
13634368 TGCGCACACCCCCCGACCCCCCGATCGTCGAAATCCCAATGCCGTCGGTCAGGTTCTCCGGTGAT
580 TGCGCACACCCCCCG-CCCCCTGATCGTCGGAACCCCAATGCTACCGGTCAAGTTCTCCGACGAT
** *
13634433 GGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
644 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
13634498 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-TCATATGCTTAGACTGGGAATGAACTCCG
709 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCT-ATATGCTTAGACTGGGAATGAACTCCG
** * * ** *
13634562 TATTTCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCCTGATGCGT
773 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * *
13634627 AAGTCAGCGATCGATTGGG-CCCCCTTCTACGTGCTGTCGATCCTGCT
838 AAGCCAGCGATCGATCGGGTCCCCC-TCTACGTGCTGCCGATCCTGCT
* ** * * * * * *
13634674 GCCGCAACCCTCGATCTAATCTGATCTTAGACGGGGAATGAACTTCATACGGCTAAGCCAATCGA
1 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** * * *
13634739 TGAAACGAGCGGGCGGGCAAGCGGGCACTATACCAGCCAGAGAGACGGGAGGCGCAAGCCATGGA
66 CGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
13634804 TCGATAGGGTGGTAGG-AGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTTTGCGTGCCAATGCCATTTTTATG
* * *
13634868 GCTTGTAAATTCATACAATGGTCCC-TAACCCTTCACGTGAAGCTTCATGGCAAGACGAGTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * **
13634932 TTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCAGGATTTTTTAAAATTTTTT-TGCATCG
260 TTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGG
** * *
13634996 AGTTTTGGATCCAAACTTGGTAGACATGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
13635061 GCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACT
389 GCTAAAAACTCGAAGTGTAC-AAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
13635126 TTAATGGCTACAGGCAGCAAACCTGTAAAATC-GCAATTGCTTTTTAAGGGGGTGTGAGTTCTCG
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTG-AAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
13635190 AGGTTTGATGAGAGATAGGGGGCCAGTATAGGGGCCAAGTACCAGCACCCTTTGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** * * * * *
13635255 CG-A-TCCCCCCGATCGACGGATCATC--AATGCCACCGATCAGGTTCT-CCGG-CCA-TGCTCC
582 CGCACACCCCCCG-CCCCCTGATCGTCGGAA--CC-CC-A--A--TGCTACCGGTCAAGTTCTCC
* * * * *
13635313 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGGCCAGCTTGTGCTGTC
638 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
*
13635378 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAA
703 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAA
* * * *
13635443 CTCCGTATGCCTAAGTCAACCGACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAAGGGCGGGA
768 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * *
13635508 TGCGCAAGCCGAG-GATCGATCGGGTCCCCCTCTGCATGCTGCTGGTCCTGCT
833 TGCGCAAGCC-AGCGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
* * * ***
13635560 ACCGCAACCCCCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* ** * *
13635625 CGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCTAGAGAGATTGGATGTGCAAGCTGTGGA
66 CGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
13635690 TCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTACGTGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTTTGCGTGCCAATGCCATTTTTATG
* *
13635755 GCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
13635820 TTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTCGAGATTTTTAAAAATTTTTTCAGCAGGA
260 TTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* *
13635885 GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
13635950 CTAAAAACTCGAAGTGTACAAATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
390 CTAAAAACTCGAAGTGTACAAA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * * * *
13636015 TAAAGGCTACTGGTAGGAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAG
454 TAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
13636080 GTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
519 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
*
13636144 CACACCCCCCAGCCCTCCTGATCGTCGGAACCCCAATGCTACCGATCAAGTTCTCCGACGATGGT
584 CACACCCCCC-GCCC-CCTGATCGTCGGAACCCCAATGCTACCGGTCAAGTTCTCCGACGATGGT
** * * *
13636209 GCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAACCTAGCATGTGCTGCCGCAACCCTC
647 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
13636274 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATCAACTCCGTATG
712 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATG
* * *
13636339 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGACGGGATGCGCAAGC
777 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* **
13636404 CAGCGATCGATCGGGTCCCCATCTGTGTGCTGCCGATCCTGCT
842 CAGCGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
* *
13636447 GCCGCAACCCTTGGTCTGGTC-GAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
1 GCCGCAACCCTCGGTCTGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
13636511 ACGAAAAGAGTGGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGACACGTGATGCGCAAGCC
65 ACGAAACGA----GCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
13636576 GTGGATCGATAGGATGGTAGGTGGGTTTAGACACATCATT-TATTTTTGCGTGCCAATGCCATTT
126 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TTATATTTTTGCGTGCCAATGCCATTT
* *
13636640 TTATGGCTTGCAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
13636705 TCATTTTCTGTTTTTCATGATTTTCGAAACATTTTACGGTTCGGGATTTTTTAAAATTCTCTCAG
255 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
** * *
13636770 AAGGAGTTTTGGATCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
13636835 ATCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
385 TTCAGCTAAAAACTCGAAGTGTACAA-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
13636900 CACTTTAATGG-TACTGCCAGCAAACC-GATAAAATCTGAAATGCTCTTTAAGGGGGTTTGAGTT
449 CACTTTAATGGCTACTGGCAGCAAACCTG-TAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTT
* ** ** *
13636963 CTCGAGGCTTGATGAGGGATAGGGGGCCAATATAATTGTGAAGTACCAGCACCCGTCGCACATCA
513 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
13637028 TGTGCGCACACCCCCCTGACCCCCCTGAAT--TCCGGAACCCCAATGCCACCGGTCAGGTTCTCC
578 TGTGCGCACACCCCCC-G--CCCCCTG-ATCGT-CGGAACCCCAATGCTACCGGTCA--------
* * * * * *
13637091 GACGATGCTCCGACGATGGTGCTCCGGCGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCTCAG
630 -A-G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *** *
13637156 CATGTGCTGCCGCAACCCTTGATCCAAT-CAATCTTAGACTGGGAATGAACTC
692 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
13637208 CGTATGCCTA
Statistics
Matches: 2960, Mismatches: 390, Indels: 144
0.85 0.11 0.04
Matches are distributed among these distances:
881 2 0.00
882 1 0.00
883 193 0.07
884 207 0.07
885 72 0.02
886 344 0.12
887 411 0.14
888 489 0.17
889 146 0.05
890 329 0.11
891 107 0.04
892 9 0.00
894 2 0.00
895 1 0.00
899 87 0.03
900 23 0.01
901 60 0.02
902 90 0.03
903 5 0.00
904 18 0.01
905 20 0.01
906 15 0.01
907 268 0.09
908 25 0.01
909 24 0.01
910 12 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTTTGCGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGCCCCCTGATCGTCGGAACCCCAATGCTACCGGTCAAGTTCTCCGACGATGGTGCCC
CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
TGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGC
GATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
Found at i:13638804 original size:715 final size:711
Alignment explanation
Indices: 13636443--13639177 Score: 3953
Period size: 715 Copynumber: 3.8 Consensus size: 711
13636433 CTGCCGATCC
* *** *
13636443 TGCTGCCGCAACCCTTGGTCTGGTCGAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTGATCCAATC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13636508 CCGACGAAAAGAGTGGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGACACGTGATGCGCAA
65 CCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13636573 GCCGTGGATCGATAGGATGGTAGGTGGGTTTAGACACATCATT--TATTTTTGCGTGCCAATGCC
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-ATTCATATTTCTGCGTGCCAATGCC
* * *
13636636 ATTTTTATGGCTTGCAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* * * *
13636701 CGACTCATTTTCTGTTTTTCATGATTTTCGAAACATTTTACGGTTCGGGATTTTTTAAAATTCTC
255 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTC
* *
13636766 TCAGAAGGAGTTTTGGATCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAA
320 TCGGAAGGAG-TTTGGATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCA-AAA
*
13636831 AAAAATCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
383 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13636896 CAGACACTTTAATGGTACTGCCAGCAAACCGATAAAATCTGAAATGCTCTTTAAGGGGGTTTGAG
448 CAGACACTTTAATGGTACTGCCAGCAAACCGATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAG
** ** *
13636961 TTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAATTGTGAAGTACCAGCACCCGTCGCACAT
513 TTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
13637026 CATGTGCGCACACCCCCCTGACCCCCCTGAATTCCGGAACCCCAATGCCACCGGTCAGGTTCTCC
578 CATGTGCGCACACCCCCCCGACCCCCCCGAATTCTGGAACCCCAATGTCGCCGGTCAGGTTCTCC
* * *
13637091 GACGATGCTCCGACGATGGTGCTCCGGCGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCTCAG
643 GACGATGCTCCGGCGATGGTGCTCCGACGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCCCAG
13637156 CATG
708 CATG
*
13637160 TGCTGCCGCAACCCTTGATCCAATCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
1 TGCTGCCGCAACCCTTGATCCAATCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
13637225 CGACGAAACGAGCAGGCGGGTGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
66 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
13637290 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGTGTGCCAATGCCATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCGTGCCAATGCCATTTTT
*
13637355 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTC
196 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
* * * * * * *
13637420 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGAAA
261 GTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTCTCGGAA
** * * *
13637485 GGA-TTTTTAGCCACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
326 GGAGTTTGGA-TC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCAAAAAAAAAT
* *
13637549 CAGCTAAAAACTCAAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
13637614 CTTTAAAGGCTACTGGCAGCAAACCTG-TAAAATCTCAAATGGTCTTTAAGGGGGAGTGAGTTCT
454 CTTTAATGG-TACTGCCAGCAAACC-GATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
13637678 CAAGGTTTGATCAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
517 CGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
13637743 TGCGCACACACCCCCCGGCCCCTCCG-A-TCGTCGGAACCCCAA--T-GCC-ATC-GG---T-C-
582 TGCGCACAC-CCCCCCGACCCCCCCGAATTC-T-GGAACCCCAATGTCGCCGGTCAGGTTCTCCG
* * * * * * * *
13637796 A-GGTTCTCCGGCGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGG
644 ACGATGCTCCGGCGATGGTGCTCCGACGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCCCAGC
13637860 ATG
709 ATG
** * * * * * * * * *
13637863 TGCTATCACAACCATCGGTTCGATTCGATCTTAGACTGGGAATGAACTCTGTTTGCCTAAGCCAA
1 TGCTGCCGCAACCCT-TGATCCAATCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
13637928 CCGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGTCAGCCAGAGAGACGGGATGCACAAGCTA
65 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
13637993 TGGATCGATAGGGTGGTAGGTGGGTTTCA-GCACATCTTCATATTTCTACGTGCCAATGCCATTT
130 TGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATATTCATATTTCTGCGTGCCAATGCCATTT
*
13638057 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
* *
13638122 TCGTTTTCTATTTTTCACGATTTTCT-AAACATTTTACGGTTTGGGATTTTTTAAAATTTTCTCG
259 TCGTTTTCTATTTTTCATGATTTT-TGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTCTCG
13638186 GAAGGAGTTTGGATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCAGAAAAAAA
323 GAAGGAGTTTGGATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGC--AAAAAAA
*
13638251 AATTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
386 AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
13638316 ACACTTTAATGGTACTGCCAGCAAACCGATAAAATCTGAAATGCTCTTTAAGGGGGTTTGAGTTC
451 ACACTTTAATGGTACTGCCAGCAAACCGATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTC
** * *
13638381 TCGAGGCTTGATGAGGGATAGGGGGCCAATATAATTGCGAAGTACCAGCACCCGTCGCACATCAT
516 TCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
13638446 GTGCGCACACCCCCCCGACCCCCCCCCGAATTCTAGAACCCCAATGTCGCCGGTCAGGTTCTCCG
581 GTGCGCACACCCCCCCGA--CCCCCCCGAATTCTGGAACCCCAATGTCGCCGGTCAGGTTCTCCG
13638511 ACGATGCTCCGGCGATGGTGCTCCGACGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCCCAGC
644 ACGATGCTCCGGCGATGGTGCTCCGACGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCCCAGC
13638576 ATG
709 ATG
* *
13638579 TGCTGCCGCAACCCTTGATCCAATCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAT
1 TGCTGCCGCAACCCTTGATCCAATCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
13638644 CGACGAAACGAGCGGGCGGGTGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
66 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
13638709 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTTTGTGTGCCAATGCCATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCGTGCCAATGCCATTTTT
*
13638774 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTC
196 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
* *
13638839 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
261 GTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTCTCGGAA
* * * * *
13638904 GGATTTTTGG-TGCCAAACTTGGTAAACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
326 GGA-GTTTGGAT-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCA-AAAAAAAA
13638968 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
388 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
13639033 ACTTTAATGGTACTGCCAACAAACCGGTAAAATCTGAAATACTCTTTAAGGGGGTGTGAGTTCTT
453 ACTTTAATGGTACTGCCAGCAAACCGATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * * * *
13639098 GAGGCTTGATGTGGGATAGGGGGCCGATATAAGGGCCAACTACTAGCACACATCGCACATAATGT
518 GAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
13639163 GCGCACACCCCCCCG
583 GCGCACACCCCCCCG
13639178 GCGATGCTCT
Statistics
Matches: 1787, Mismatches: 195, Indels: 74
0.87 0.09 0.04
Matches are distributed among these distances:
703 113 0.06
704 394 0.22
705 103 0.06
706 3 0.00
707 3 0.00
708 3 0.00
709 4 0.00
710 4 0.00
711 9 0.01
712 162 0.09
713 295 0.17
714 27 0.02
715 485 0.27
716 161 0.09
717 21 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (711 bp):
TGCTGCCGCAACCCTTGATCCAATCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTCTCGGAA
GGAGTTTGGATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCAAAAAAAAATCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGTACTGCCAGCAAACCGATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGACCCCCCCGAATTCTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGC
TCCGGCGATGGTGCTCCGACGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCCCAGCATG
Found at i:13641988 original size:26 final size:26
Alignment explanation
Indices: 13641911--13641990 Score: 124
Period size: 26 Copynumber: 3.1 Consensus size: 26
13641901 AATCCGATCT
* *
13641911 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCGTATGCC
* *
13641937 TAGACTCGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13641963 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13641989 TA
1 TA
13641991 AGTCAACCCG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:13642849 original size:26 final size:26
Alignment explanation
Indices: 13642813--13642865 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13642803 CCGGTTTGAT
13642813 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
13642839 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13642865 C
1 C
13642866 CTAAAATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13644080 original size:871 final size:874
Alignment explanation
Indices: 13639178--13644625 Score: 6171
Period size: 871 Copynumber: 6.2 Consensus size: 874
13639168 CACCCCCCCG
* * **
13639178 GCGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
1 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * ** * *
13639243 ATTTGCTGTCGCAACCCTATGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGT
66 ATGTGCTGCCGCAACCCTCGGTCC-AT--GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
13639308 CAACCCATGAAATGAGTGTGCGGGTGCTCAGTCGGCCAGAGGGG-AAGGATGCGTATGCCGGGGA
128 CAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGA-GATGCGCAAGCCAGGGA
* * * * * * * *
13639372 TCGACCAGGTCCCCCTCTGGGTGCTGCCGATCTTACTGTCGCAACCGTTGG-CTCGGTCCAATCT
192 TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-CGGTCCGATCT
* * * *
13639436 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCTATG-AACGAG-GGGACAGACGGGCGGGC
256 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGG-CGGGCGGGCGGGC
* * * * * *
13639499 AGGCACTAAGCCGATCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTTGGTT
319 GGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
13639564 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGT
384 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
13639629 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTCTTTTTCACGATTTTTGA
449 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
13639694 AACTTTTTACGGTTCGAGATTTTTTAAAAGTTTTTCGGAAGGAGTTTTGG---C---CTTGGTAG
514 AACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * **
13639753 ACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACTTAGTGTACAAG
579 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
* * *
13639818 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCAACTGGCAACAAACC
644 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
13639883 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCC
709 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
13639948 AATATAAGGGCCAAGTACCAGCACCCATCACACAT-ATGTGCGCACA-CCCCCCGGCCGCCCCGA
774 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* *
13640011 TC-ATCGGAACCCCAATGTCGCCGATCAGGTTCTCCA
839 TCGA-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCA
* * *
13640047 GCAATGCTCC-AGCGATGGTGCCCCGATG-AGCAAAAATGCGGCACCAGCAACATGCCCGAGCCC
1 GCGATGCTCCGA-CGATGGTGCCCCGACGAAG-AAAAATACGGCACCAGC-ACATGCCCGAGCCC
* * * ** * *
13640110 AAACATGTGCTACCAGCAACCCTCAGTCTGGTCCGATCTTCGACTGGGAACGAACTCCGTAAATG
63 -AGCATGTGCTGCC-GCAACCCTCGGTC-CAT--GATCTTAGACTGGGAATGAACTCCGT--ATG
* * * * * *
13640175 CATAAGTCAAACCCACGAAATGAGCGTAGCGGGCGTGCTCAAGTCAGCCAGAGGGGCGGGATGCA
121 CCTAAGTC-AACCCATGAAACGAGCGT-GC-GG-GTGCTC-AGTCGGCCAGAGGGGCGAGATGCG
* * * *
13640240 CAAGCCAGGGATCGACTTGGGT-CCCCTCTAGCATGCCCTACCAGATCCATGCTG-CACAACCCT
181 CAAGCCAGGGATCGAC-CGGGTCCCCCTCT-GCGTG--CTGCC-GATCC-TGCTGCCGCAACCCT
* * * * *
13640303 CGGTTCGGTCCGATCTTAGATTGGGCAATGAAACTTCCGTATGCCTTAAGCCAATGATGAAAGGA
240 CGGTCCGGTCCGATCTTAGACTGGG-AATG-AAC-TCCGTATGCC-TAAGCCAACGACGAAACGA
* * * * * *
13640368 GCGGGCAGGCGAACGGGCGGGCGTGCACATACGCCGGCCAAAGAGACGAGATGCGCACGCCGTGG
301 GCGGGC-GG-G--CGGGCGGGCGGGCAC-TACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGG
*
13640433 ATCGATAGCGGTGGTAGGTGGGGTTTTAGGCATATCTTCATATTTCTGCATGCCAATGCC-TTTT
361 ATCGATAG-GGTGGTAGGT-GGG-TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
13640497 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
423 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * *
13640562 CGATTTCTATTTTTCATTATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCGAA
488 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAA
* *
13640627 AAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTATCGGCATGCACAAAAAAA
553 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAA
* * *
13640691 TTCAGCTAAAAAATCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
617 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
13640756 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
682 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
13640821 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAACACCCATCGCACATCAT
747 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * **
13640886 GTGCGCACACCCCCCCGGCCCCCTCAATCGCCAAAACCCCAATGCCGCCGGTCAGGTTCT-C-
812 GTGCGCACACCCCCCCGGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCA
* * *
13640947 -CG--G---C-A--ATGGCGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCCGC
1 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* *
13641003 ATGTGCTGCTGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 ATGTGCTGCCGCAACCCTCGGTCCA-T--GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
13641068 CAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCC-GAGGA
128 CAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCAG-GGA
* ** * * * *
13641132 TTGACCGGGT-CCATTTTGCGTGCTGCCGATCCTGCTGCAGCAACCCTCGGTCCAGTCTGATCTT
192 TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * * * *
13641196 AGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGA----GCGGGCAGGTGGGTGG
257 AGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGCGGGCGGGCGGGCGGGCGG
* * * * *
13641257 GTACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTA
321 GCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
13641322 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTATGGCTTGCAAATTCATACAATGGTC
386 GGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
13641387 CCTTAAGCCTTCACGTGAAGTTTCCTGGCTAGACGACTCATTTTCTATTTTTCACGATTTTCGAA
450 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * **
13641452 ACTTTTTAT-GGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCTGAACTTGGTAG
515 ACTTTTT-TCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
*
13641516 ACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
579 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
* *
13641581 ATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC-GAACACTTTAATGGCCACTGGCAGCAAAC
644 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAAC
* *
13641645 CTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
708 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
13641710 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCACCCGG-CCCCCC
773 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCC
* * * * *
13641774 GATCGCCGGAACCCCAATACTGTCGGTCAGGTTCTCCG
837 GATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCA
* * * **
13641812 GCGATGCTTCGACGATGGAGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
1 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
** * * *
13641877 ATGTGCTGCCATAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
66 ATGTGCTGCCGCAACCCTCGGTCC-AT--GATCTTAGACTGGGAATGAACTCCGTATGCCTA-AG
* * * * ** ***
13641942 TCGGA---ATGAACTTCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGA
127 TC-AACCCATGAA--ACG-A-GCGT-G-C-GGG--TG--CTCAGTCGGCC--AG---AGGGGCG-
*** * * * * *** * * *
13642004 AACGAACGTGCGGGCGCTCAGCCGACCAGAGGAGCGAGTTGT-GCAAGCTG-GGGATCGGCCGGG
174 -A-G-A--TGCGCAAGC-CAG-GGATC----GACCG-G--GTCCCCCTCTGCGTG--CTGCC-GA
* * *
13642067 TCCCCCTCTGCATGCTGTCGCAA-CCTCGGTCCGGACTGATCTTAGACTAGGAATGAACTCCGTA
222 T----C-CTGC-TGC---CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
** * *
13642131 TGCCTAAGCCAACCGACGAAACGAGCGTACGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
278 TGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGA
* * * * *
13642196 TGGGATGCGTAAGCCGTGGATCGATAAGGTGGTAGGTTGGTTTAGGCACATCTTTATATTTCTTC
342 TGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
13642261 ATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
407 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * *
13642326 TCATGGCAAGACGACTCGTTTTTTGTTTTTCACAATTTTTGAAACATTTTAT-GGTTCGGGACTT
472 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTTCGGTTCGAGATTT
** ** * * *
13642390 TTTAAAATTTTTTCGCGAGGAGTTTTGGATCCAAACTTTGTAGACGTGATCCTCGTATTTTTATT
536 TTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* * *
13642455 GGCATGCCCAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
601 GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
13642520 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC--ACCTATAAAATCTCAAGTGCTCTTT
666 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
13642583 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGC
731 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
13642648 ACCCATCGCACATTATGTGCGCACACCCCCCCGGCCCCTCCGATC-ATCGGAACCCCAATGTCGC
796 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGA-CGGAACCCCAATGCCGC
13642712 C-G--A-----T-CA
860 CGGTCAGGTTCTCCA
* *
13642718 G-G-TTCTCCGACGATGGTGCCCC-AGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAG
1 GCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * *
13642780 CATGTGCTGCCACAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
65 CATGTGCTGCCGCAACCCTCGGTCC---ATGATCTTAGACTGGGAATGAACTCCGTATGC-----
* * * *
13642845 CTGGGAATGAACTCTGTATGCCTAAAATCATCCCACGAAACGAGCGTGCGGGCGCCCAGCCGGCC
122 C------T-AA----G--T--C----A--A-CCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCC
* * * ** * * *
13642910 AGAGGGGTGGGATGTGCAAGCTGGGGATCGACCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTA
165 AGAGGGGCGAGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* * * *
13642975 CTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAAC
230 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGAC
* * *
13643040 GAAACGAGCGGGCGGGAGGGTGGGTGGGCACTACGCC-AGCCAGAGAGATGGGATGCGCAAGCCG
294 GAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGATGGGATGCGCAAGCCG
* ** *
13643104 TGGATCAAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCGCCTATGCCATTT
358 TGGATC-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
13643169 TTATGGCTTGTAAATTCATACAATGGTCCCTTAA-CCTTCACGTGAAGTTTCATGGCAAGACGAC
422 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
13643233 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTTCG
487 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAA-TTTTTTCG
*
13643298 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAA
551 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * *
13643362 ATTCAGCTAAAAA-TGCAAAGTGTACAAGATTTTGTGATCGTTTGAATAAAGTG-CCCCAATTTC
616 ATTCAGCTAAAAACT-CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTC
*
13643425 AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
679 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
13643490 TTCTCAAGGTTTGATGAGGGACAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGCACAT
744 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
13643555 CATGTGCGTACA-CCCCCTGGCCCCCCCGATCGACAGAAGCCCAATGCCGCCGGTCAAGTTCTCT
809 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCC
*
13643619 G
874 A
* * *
13643620 GCGATGCTCCGACGATGGTGCCCCAATGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGC
1 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * *
13643684 ATGTGCTGCCGCAACCCTAGGT-C-TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAT
66 ATGTGCTGCCGCAACCCTCGGTCCATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
*
13643747 CCCATGAAACGAGCGTGTGGGTGCTCAG-CTGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCG
131 CCCATGAAACGAGCGTGCGGGTGCTCAGTC-GGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCG
** * * * *
13643811 ACCGGGTCCCCCTCTGCAAGCTGCCCATCCTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGA
195 ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * * *
13643876 CTGGAAATGAACTCCGTATGCCTAAGCCAACGAACGAAATGAGTGGGCGGGCGGACGGGTGGGCA
260 CTGGGAATGAACTCCGTATGCCTAAGCCAACG-ACGAAACGAGCGGGCGGGCGGGCGGGCGGGCA
* * * *
13643941 CTACGCTGACCAGAGAGATAGGATGCGCAAGCCGTGGATCAATAGGGTGGCAGGTGGGTTTAGGC
324 CTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
**
13644006 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
389 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * **
13644071 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTCCATGATTTTCAAAACTT
454 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * * * *
13644136 TTTGCGGTTCGGGATTTTTTAAAAATTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTAGATGTG
519 TTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
13644201 ATCCTTGTATTTTTTTTGGCATGCACAACAAAATTCAGCTAAAAACTTAAAGCGTACAAGATTTT
584 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
**
13644266 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATACCTACTGGCAGCAAACCTGTAA
649 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
13644331 AATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
714 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
13644396 AAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGGCCCCCCCAATCGTC
779 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGAC
*
13644460 GGAACCCCAATGCTGCCGGTCAGGTTCTCCA
844 GGAACCCCAATGCCGCCGGTCAGGTTCTCCA
* * * * * * * *
13644491 GCGATGCTCTGGCAATGGCGCCCCAACGAAGAAAATTACGGCACCAGAACATGCCCAAGCCCAGC
1 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* *
13644556 ATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGC
66 ATGTGCTGCCGCAACCCTCGGTCCA-T--GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
13644621 CAACC
128 CAACC
13644626 GACGAAATGA
Statistics
Matches: 3909, Mismatches: 479, Indels: 374
0.82 0.10 0.08
Matches are distributed among these distances:
861 35 0.01
862 4 0.00
863 412 0.11
864 51 0.01
865 10 0.00
866 2 0.00
867 1 0.00
868 5 0.00
869 41 0.01
870 110 0.03
871 620 0.16
872 82 0.02
873 23 0.01
874 113 0.03
875 31 0.01
876 38 0.01
877 48 0.01
878 8 0.00
879 44 0.01
880 19 0.00
881 33 0.01
882 10 0.00
883 33 0.01
884 16 0.00
885 21 0.01
886 27 0.01
887 15 0.00
888 42 0.01
889 13 0.00
890 13 0.00
891 55 0.01
892 358 0.09
893 135 0.03
894 247 0.06
895 44 0.01
896 3 0.00
897 5 0.00
898 29 0.01
899 6 0.00
900 219 0.06
901 23 0.01
902 47 0.01
903 38 0.01
904 158 0.04
905 6 0.00
906 5 0.00
907 1 0.00
908 3 0.00
909 1 0.00
910 6 0.00
911 4 0.00
912 5 0.00
913 1 0.00
914 64 0.02
915 142 0.04
916 4 0.00
917 248 0.06
918 105 0.03
919 2 0.00
921 7 0.00
923 2 0.00
925 3 0.00
926 1 0.00
927 1 0.00
928 4 0.00
929 1 0.00
930 2 0.00
932 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (874 bp):
GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCCATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGA
CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACT
ACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGG
AACCCCAATGCCGCCGGTCAGGTTCTCCA
Found at i:13645240 original size:718 final size:718
Alignment explanation
Indices: 13643841--13645325 Score: 2300
Period size: 718 Copynumber: 2.1 Consensus size: 718
13643831 CTGCCCATCC
* *
13643841 TGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * *
13643906 CGAACGAAATGAGTGGGCGGGCGGACGGGTGGGCACTACGCTGACCAGAGAGATAGGATGCGCAA
66 CGAACGAAATGAGCAGGCGGGCGGACGGGCGGGCACTACGCAGACCAGAGAGACAGGATGCGCAA
**
13643971 GCCGTGGATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
131 GCCGTGGATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATGCCA
*
13644036 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGAC
* * *
13644101 GACTCGTTTTTTATTTTCCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTT
261 GACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAAATTTTT
* * * *
13644166 CGAAAGGATTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAACA
326 CGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAACA
*
13644231 AAATTCAGCTAAAAACTTAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
391 AAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13644296 AGACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAG
456 AAACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAG
* * * *
13644361 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACAT
521 TTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACACAT
*
13644426 CATGTGCACACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCA
586 CATGTGCACACACCCCCCGCCCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCA
* * * *
13644491 GCGATGCTCTGGCAATGGCGCCCCAACGAAGAAAATTACGGCACCAGAACATGCCCAAGCCCAGC
651 GCGATGCTCCGACAATGGCGCCCCAACGAAGAAAAATACGACACCAGAACATGCCCAAGCCCAGC
13644556 ATG
716 ATG
* *
13644559 TGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
13644624 CCG-ACGAAATGAGCAGGTGGGCGGACGGGCGGGCACTACGCCAG-CCAGAGAGACAGGATGCGC
66 -CGAACGAAATGAGCAGGCGGGCGGACGGGCGGGCACTACG-CAGACCAGAGAGACAGGATGCGC
* * * **
13644687 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATTT
129 AAGCCGTGGATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATGC
*
13644752 CATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAG
* * *
13644817 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCAGGA-TTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAAATTT
* *
13644881 TTTGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAA
324 TTCGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
13644946 -AAGAATTCAGCTAAACACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
389 CAA-AATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* ** *
13645010 TTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
453 TTCAAACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGC
13645075 GAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACA
518 GAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACA
* * *
13645140 CATCATTTGCGTACAC-CCCCCCGCCCCCCCCGATCGTCGGAACCCCAATG-TCGTCGGTCAGGT
583 CATCATGTGC--ACACACCCCCCGCCCCCCCCAATCGTCGGAACCCCAATGCT-GCCGGTCAGGT
* * * * * * *
13645203 TCT-CTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGA
645 TCTCCAG-CGATGCTCCGACAATGGCGCCCCAACGAAGAAAAATACGACACCAGAACATGCCCAA
13645267 GCCCAGCATG
709 GCCCAGCATG
* * * *
13645277 TGCTGCCGCAACCCTCGATCTAGTCTGATCTTCGACTGGGTATGAACTC
1 TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTC
13645326 TATAGGCTTA
Statistics
Matches: 696, Mismatches: 64, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
716 2 0.00
717 262 0.38
718 424 0.61
719 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (718 bp):
TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CGAACGAAATGAGCAGGCGGGCGGACGGGCGGGCACTACGCAGACCAGAGAGACAGGATGCGCAA
GCCGTGGATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGAC
GACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAAATTTTT
CGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAACA
AAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AAACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAG
TTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACACAT
CATGTGCACACACCCCCCGCCCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCA
GCGATGCTCCGACAATGGCGCCCCAACGAAGAAAAATACGACACCAGAACATGCCCAAGCCCAGC
ATG
Found at i:13646236 original size:26 final size:26
Alignment explanation
Indices: 13646200--13646252 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13646190 CCAATCTGAT
13646200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13646226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13646252 C
1 C
13646253 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13646392 original size:894 final size:890
Alignment explanation
Indices: 13644559--13647122 Score: 3657
Period size: 896 Copynumber: 2.9 Consensus size: 890
13644549 GCCCAGCATG
* * ** *
13644559 TGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13644624 CCGACGAAATGAGCAGGTGGGCGGACGGGCGGGCACTACGCCAGCCAGAGAGACAGGATGCGCAA
66 CCGA--AAA--A--A--TGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT-TGCAA
* * **
13644689 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATTTCA
122 GCCGTGGATCGATAGGGTGGTAGG-AGGTTTAGGCACATCTTCATATTTCTC-GTGCCAATGCCA
* *
13644754 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGAC
185 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
13644819 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTAAAATTTTTTT
250 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTT
* * *
13644884 GAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAG
315 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
13644949 AATTCAGCTAAACACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
380 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
13645014 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
445 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
13645079 TCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACACATC
510 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACACATC
* * * * *
13645144 ATTTGCGTACACCCCCCCGCCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCTG
575 ATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
*
13645209 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
639 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG-CACCAGCACATGCCCGAGCCCAGC
* * * * *
13645274 ATGTGCTGCCGCAACCCTCGATCTAGTCTGATCTTCGACTGGGTATGAACTCTATAGGCTTAGAC
703 ATGTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
*
13645339 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGACGCTCAGCCAGCCAG
768 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGACGCTCAGCCAGCCAG
* * *
13645404 AGGGGCGGGATGCACAAGTCGGGGATCGGTCGAGTCCTCTTCTTCGTGCTGCCGATCC
833 AGGGGCGGGATGCACAAGTCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCC
* * *
13645462 TGCTGCTGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAG
1 TGCTGCTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13645527 CCGATAAAATGAGCGGGCGGGCGGGCAGTACACCGGCCAGAGAGACGGGATATGGAAGCCGTGGA
66 CCGAAAAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT-TGCAAGCCGTGGA
*
13645592 TCGATAGGGTGGTAGGCAGGTTTAGGCATATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGG-AGGTTTAGGCACATCTTCATATTTCT-CGTGCCAATGCCATTTTTATG
* * * *
13645657 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAATATGACTCATT
193 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * * * *
13645722 TTTTATTTTTCATGATTTTCAAAACTTTATACGGTTCGGGATTTTTTAAAATTGTTTCGGAGGGA
258 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTTGAAAGGA
13645787 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
13645852 CTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
13645917 TAATGGCTACTGGCAGCAAACTTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
13645982 GTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACACATCATGTGCG
*
13646047 CACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
582 CACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * *
13646111 CCGGCGATGGTTCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTA
647 CCGGCGATGGTGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
13646176 CCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
711 CCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATG
** * * * * *
13646241 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTATGGGCGCTCAGTCGGCCAGAGGGGCGG
776 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGACGCTCAGCCAGCCAGAGGGGCGG
*** *
13646306 GATTTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
841 GATGCACAAGTCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
13646356 TGCTG-TCGTAACCCTCGGTCTGG-CTCGATGTTAGACTAGGAATGAACTCTGTATGCCTAAGCC
1 TGCTGCT-GCAACCCTCAGTCTGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
13646419 AACCGACGAAACGAACGGGCGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATTCGCAAGC
64 AACCGA--AAA--AATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATT-GCAAGC
* * * **
13646484 CGTGGATCGATAGGGTGATAGGTGAGTTTAGGCACATCTTCATATATCTATTTGCCAATGCCATT
124 CGTGGATCGATAGGGTGGTAGGAG-GTTTAGGCACATCTTCATATTTCT-CGTGCCAATGCCATT
*
13646549 TTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
187 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
13646614 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAATTTTTTTGA
252 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTTGA
* *
13646679 ATGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCAT----AAAAAAA
317 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * **
13646740 TTCAGCTGAAAACTTGAAGTGTACAAGATTTTTTGATAATTTGAAAAAAGTGTCCCCATTTCAGA
382 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
13646805 CACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTC
447 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** *
13646870 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTTCCAAGTACCAGCACCCATCGCACATCAT
512 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACACATCAT
* * * *
13646935 GTGCGCACACCACCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGG
577 GTGCGCACACC-CCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * *
13647000 TGATGCTCTGGCGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
640 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG-CGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
13647065 TGTGCTGCTGTAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGC
704 TGTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGC
13647123 CTAAGCTAAC
Statistics
Matches: 1485, Mismatches: 161, Indels: 37
0.88 0.10 0.02
Matches are distributed among these distances:
893 197 0.13
894 324 0.22
895 213 0.14
896 418 0.28
897 70 0.05
898 199 0.13
899 1 0.00
901 2 0.00
903 61 0.04
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TGCTGCTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGAAAAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATTGCAAGCCGTGGAT
CGATAGGGTGGTAGGAGGTTTAGGCACATCTTCATATTTCTCGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTTGAAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
CCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGG
CGATGGTGCCCCGACGAAGAAAAATGCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGACGCTCAGCCAGCCAGAGGGGCGGGATGC
ACAAGTCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCC
Found at i:13649058 original size:719 final size:715
Alignment explanation
Indices: 13646356--13650879 Score: 6263
Period size: 713 Copynumber: 6.3 Consensus size: 715
13646346 CTGCCGATCC
* * * * * *
13646356 TGCTGTCGTAACCCTCGGT-CTGGCTCGATGTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCGTAACCCTCGGTCCAGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13646420 ACCGACGAAACGAACGGGC-G--GGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATTCGCAA
65 ACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * ***
13646482 GCCGTGGATCGATAGGGTGATAGGTGAGTTTAGGCACATCTTCATATATCTATTTGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
13646547 TTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
13646612 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
13646676 -TGAATGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCAT--A-AAA
325 CAGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * **
13646737 AAATTCAGCTGAAAACTTGAAGTGTACAAGATTTTTTGATAATTTGAAAAAAGTGTCCCCATTTC
389 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
13646802 AGACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAG
454 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
13646867 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTTCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*** * *
13646932 CATGTGCGCACACCACCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCCGTCGGTCAAGTTCTC
584 CATGTGCGCACA-C-CCCCCGGCCCCCCCGATCATCGGAA-CCCAATGCCGCCGGTCAGGTTCTC
* * * * **
13646997 CGGTGATGCTCTGGCGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
646 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
13647062 GCATG
711 GCATG
* * * *
13647067 TGCTGCTGTAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCTAA
1 TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
13647132 CCGACGAAACAAGCGGTCGGGCGGGCGGGCGGGCACTACACCGGCCAGAAAGATGGGATGCGCAA
66 CCGACGAAACGAGCGGGC-GGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ***
13647197 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
13647262 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCGTGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
13647327 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTA-GTTTCAGCATTTTTTAAAATTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTT-TACGGTTCGGGATTTTTTAAAATTTT
*
13647391 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
323 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
13647456 AAAAACTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CGCATT
388 AAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13647520 AT-AGACACTTTAATGGCTACTGGCAACAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
452 -TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
13647584 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCA
516 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
13647649 CATCATGTGCGCACATCCCCCAGGCCCCCTCGATCA-CTGGAACCGCAATGCCGGCGGTCAGGTT
581 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCATC-GGAACC-CAATGCCGCCGGTCAGGTT
* *
13647713 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAATTACGGCACCAGCACATGCCCGAGC
643 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
*
13647778 CCAACATG
708 CCAGCATG
** ** * * *
13647786 TGCTGCCCCAACCCTCGGTCTGGTCTGATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13647851 CCGACGAAACGAGC--G-GGCAGGCGGGCGGGCACTACGTCGACCATAGAGACGAGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
13647913 CCGTGGATTGATGGGGTGGTAGGTGGGTTTAGGCAAATATTCATATTTTCTACATGCCAATG-CA
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCA
** * *
13647977 TTTTCGTGGCTTGT-AATTCATACAATGGTCCCTTAAG-CTTTACCTGAAG-TTCATGGCAAAGA
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGA
* * **
13648039 CGACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTAAGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
13648104 TCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGTATGCACAAA
324 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
13648169 ATAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTT
389 A-AAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** * *
13648234 TTGACACTTTAATAGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAA
453 CAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
13648299 GTTCTCGACGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** *
13648364 TCATATGTGCACACCCCCCTAGCCCCCCCGATCATCGGAACCTCAATGTTGTCGGTCAGGTTCTC
583 TCATGTGCGCACACCCCCC-GGCCCCCCCGATCATCGGAACC-CAATGCCGCCGGTCAGGTTCTC
* * * *
13648429 TGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATATGGCACCAGCACATGCTCGAGCCCA
646 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
*
13648494 CCATG
711 GCATG
* * *
13648499 TGATGTCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * *
13648564 CCGATAAAACGAGTGGGCAGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
66 CCGACGAAACGAGCGGGC-GGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
13648629 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
13648694 TTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
13648759 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
*
13648824 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAC
325 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-
*
13648889 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTT
389 AAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13648954 CAGACACTTTAATGACTACTGG-AAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
453 CAGACACTTTAATGGCTACTGGCAA-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
13649017 AGTTCTCAAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATTGCAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * *
13649082 ATCATGTGCGCACACCCCCCGGCCCCCTCGATTGTCGAAACCCCAAT-CCTGCCGATCAGGTTCT
582 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAA-CCCAATGCC-GCCGGTCAGGTTCT
* * ** * * * * *
13649146 CCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGACACCAACACATTCTCGAGCCT
645 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
13649211 AGCATG
710 AGCATG
* * * * * * *
13649217 TGCTGCCGCAACCCTTGGTCCGGTTCGATCGTAGACTTGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13649282 CCAACCAAACGAGCGAGTGG-A--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
13649344 CCGTGGGTCGATAGGGTGGTAAGTCGGTTTAGGCACATCTTAATATTT-TCGCGTGCCAATGCCA
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCA
*
13649408 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13649473 GACTCATTTT-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * ** * *
13649537 CGGAAGGTGTTTTGAACCCAAACTTGGTAGACGTGATCCTTTTATTGTTGTTGGCATGCACAAAA
325 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * *
13649602 AAATCAGCAAAAAAATCGAAGCGTACAAGATTTTGTTACCATTTGAAAATAGTGTCCCCATTTTA
390 AAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
13649667 GACACTTTAATGGCTACTGGCAGCAAACCTGTAACATCTCCAATGCTCTTTAA-GGGGTGTGAGT
455 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
13649731 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATTAGGGCCAAGTACCAGCACCCATCGCACATC
520 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * * *
13649796 ATGTGCGCACACCCTCCCGGCCCCCCCGATCGCCGGAACCCTAATGTCACCGGTCAAGTTCTCCG
585 ATGTGCGCACACCC-CCCGGCCCCCCCGATCATCGGAACCC-AATGCCGCCGGTCAGGTTCTCCG
* ** *
13649861 GCGATGCTCAGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGC
648 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
13649926 ATG
713 ATG
* * ** * *
13649929 TGCTGCCGCAAACCTCGGTCTGGTCCGATCTTAGCCTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13649994 CCGACCAAATGAGCGGGCGGGCGGACGGACGGGCGGGCGGGCATTACGCCGGCTAGAGAGACGGG
66 CCGA-CGAA--A-CGAGCGGGCGG-C--A--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
13650059 ATGCGCAAGCCGTGGATCCATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTTTGCATGC
122 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
*
13650124 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAT
187 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * ** * *
13650189 GGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGTATTTTTTAA
252 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
13650254 AATTTTTTCAGAAGGA-TATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
317 AATTTTTTCAGAAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
13650318 TGCACAAAAAAACTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
381 TGCACAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
13650383 CCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGG
445 CCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
13650448 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCC
510 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * **
13650513 ATCACACATCATGTGTGCACACCCCACCCCGG-CCCCCCAATTATCGGAACCCAAATGCCGCCAT
575 ATCGCACATCATGTGCGCACA--CC-CCCCGGCCCCCCCGATCATCGGAACCC-AATGCCGCCGG
* *
13650577 TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATG
636 TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
13650642 CCCGAGCCCAGCATG
701 CCCGAGCCCAGCATG
* * ** * *
13650657 TGCTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTTGTATGCGTAAGCCAT
1 TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13650722 CCAACGAAACGAGCGGGC-G-A-GCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
13650784 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCAAGCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
13650849 TTTCATGGCTTGTAATTTCATACAATGGTCC
196 TTTTATGGCTTGTAAATTCATACAATGGTCC
13650880 ATTACTTCGG
Statistics
Matches: 3381, Mismatches: 370, Indels: 119
0.87 0.10 0.03
Matches are distributed among these distances:
711 258 0.08
712 310 0.09
713 470 0.14
714 193 0.06
715 284 0.08
716 173 0.05
717 164 0.05
718 187 0.06
719 394 0.12
720 265 0.08
721 47 0.01
723 1 0.00
724 174 0.05
725 111 0.03
726 105 0.03
727 85 0.03
728 152 0.04
729 7 0.00
730 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:13651345 original size:26 final size:26
Alignment explanation
Indices: 13651309--13651361 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13651299 CCGATTCGAT
*
13651309 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
13651335 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
13651361 C
1 C
13651362 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:13653106 original size:26 final size:26
Alignment explanation
Indices: 13653070--13653122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13653060 TTGGTCCGAT
*
13653070 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
13653096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13653122 C
1 C
13653123 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:13654020 original size:26 final size:26
Alignment explanation
Indices: 13653969--13654021 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13653959 TCGGTCTGAT
**
13653969 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13653995 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13654021 C
1 C
13654022 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13654908 original size:26 final size:26
Alignment explanation
Indices: 13654879--13654929 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13654869 AGTCCGATCA
*
13654879 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
13654905 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
13654930 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:13655802 original size:26 final size:26
Alignment explanation
Indices: 13655766--13655818 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13655756 CCGGTCTGAT
*
13655766 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
13655792 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
13655818 C
1 C
13655819 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:13657612 original size:26 final size:26
Alignment explanation
Indices: 13657574--13657626 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13657564 CCAGTTTGAT
* *
13657574 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
*
13657600 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
13657626 C
1 C
13657627 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:13658496 original size:26 final size:26
Alignment explanation
Indices: 13658460--13658512 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13658450 CCGGTCCGAT
*
13658460 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
13658486 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
13658512 C
1 C
13658513 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:13659313 original size:899 final size:899
Alignment explanation
Indices: 13651744--13661166 Score: 12142
Period size: 886 Copynumber: 10.5 Consensus size: 899
13651734 CTTTTCACAA
* * *
13651744 TTTTTGAAACTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * * * **
13651809 TTGGCATGCATAACAAAATTCAGATAAAAACTCGACGTGTACAAGAATTTGTGACCATTCAAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGAAA
* * ** *
13651874 AAAATGTCCCCATTTCAGACACTTTAAGGGCTACTGGTGGCAAACCTGTAAAATCTCAAGTGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* **
13651939 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTAGA
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* ** * *
13652004 AGCACCCATCGCACATCATGTGCGCATACCCCCCCGGTTCCCCGATCGTCGGAACCCTAATGCTG
260 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * *
13652069 CTGGTCAGGTTCTCCGAC---G-T---G-G-T-AT--CCCGGCGTAGAAAATTGCGGCACC-GAC
325 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG-C
* ** * * **
13652121 ACATGCCTGATTCCAGCATGTGCTGCCGCAACCCTTGGGCCAATCCGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * * *
13652186 ACTCCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACTCACGAAACAAGCGTGCG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
13652251 GGCTCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCTGGGGATCGGTCGGGTCCCTCTGTGCGTG
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTG
* ** * * ** * * *
13652316 CTGTCGATCCTGCTGTCGTAACCCTTGGTCCAATCTAATCTTCGACAGGGAATGAACTCCGTATG
584 CTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
*
13652381 CCTAAGCCAACCGACGAAACGAGTGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
649 CCTAAGCCAACCGACGAAAC----GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
13652446 GGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGT
710 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT
**
13652511 GCCAATGCCATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
775 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *
13652576 ATGGCAAGATGACTTGTTTTCTATTTTTCACAATTTTGGAAACTTTTTACGGTTCGGGAT
840 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
* * * * * *
13652636 TTTTTAAAATTTTTTC-GAAAGACGTTTTAGCCCCAAATTTGGTAGACGCGATGCTGGTATTTTT
1 TTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
13652700 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTATAAGATTTTGTGACCATTTGAAA
65 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
13652765 AAAGTGTCCCCAGTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * ** *
13652830 TTTAAGGGGGTGTGACTTTTCGAGGTTTGATGAAGGATAAAGGGCCAGTATAAGGGCCAAGTACC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * * *
13652895 AGCACCCATCGCACATCATGTGCCCATA-GCCCCCGACCCCCCCGATCGCCGGATCCCCAATGTC
260 AGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCC
* * * * *
13652959 GCCGGTCAGGTTCTCCGACGATGCTCCGACGA---CGCCCTGATGAAGAAAAATGTGGCACCAGC
324 GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* ** *
13653021 ACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTTTGGTCCGATCTTAGAATGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * *
13653086 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * ** * *
13653151 GGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGATCGGATCCCCCTCTGCTTG
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTG
* * * * * **
13653216 CTGTCGATCCTGCTACCGCAACCCTCAGTTTGGTCTGATCTTATACTGGGAACAAACTCCGTATG
584 CTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13653281 CCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGAT
649 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
13653346 ACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TAGCGTGCC
714 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-TGTGCC
* *
13653410 AATGCCATTTTTATGGCTTGTAAATTGATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATG
778 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
** * ** * *
13653475 GCTGGACGACTCGTTTTCTATTTTCCACGATTTTCAAAACTCTTTACGGTTCAGGAT
843 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
* * * * * *
13653532 TTTTGAAACTTTTTTCGAAAGGAGTTTTGGCCCCCAACTTGGAAGACGTGATCCTTGTATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
** * *
13653597 TTGGCATGCACAAAAAAATTCAAATAAAAACTTGAAGTG-ACAAGGTTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
13653661 AAGTGTCCTCA-TTCTAGACACTTTAATGGCTACTGGCAGTAAATCTGTAAAATCTCAAATGCTC
131 AAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
13653725 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATGAA-GGCCAAGTAC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTAC
* ** * *
13653789 CAGCACCCATCACACATCATGTGCTTACACCCCCCCGACCCCCCCGATCG-CTGGAACCCCAATT
259 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTC-GGAACCCCAATG
** * * * * *
13653853 ATGCCAGTCATGTTTTCCGACGATGCTCCGGCGATGGTGCCTCGACGAACAAAAATGCGGCACCA
322 CCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
** * * *
13653918 GCACATGAACGAGCCCAGCATGTGCTGCCGCAACACTCGGTTCGGTCTGATCTTAGACTGGGAAT
387 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * *
13653983 GAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGGAACGAACGTG
452 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
13654048 CGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCA
517 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCG
* * * ** **
13654113 TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCAGA-CCAATCTTAGACTGGGAATGAACTTTGT
582 TGCTGCCGATCCTGCTACCGCAACCCTCGGT-CTGATCTGATCTTAGACTGGGAATGAACTCCGT
* * **
13654177 AT-ACTAAGCCAATCGACGAAACGAGCAAGCAGGCGGGCGGGCAGGCGGGCACTACGTTGGCCAG
646 ATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGC--G--GGCGGGCACTACGCCGGCCAG
* * * * *
13654241 AGAGACGAGATGCGCAAGTCGCGGATCGATAGGGTGGCAGGTTGGTTTAGGCACATCTTCATATT
703 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*** *
13654306 TCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTG
768 TCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * *
13654371 AAGTTTCTTGGCAAG-CTGACTCATTTTCTATTTTTCATGA-TTTTGAAAACTCTTTGCGGTTCA
833 AAGTTTCATGGCAAGAC-GACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCG
13654434 GGAT
896 GGAT
* * * *
13654438 TTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCCAACTTGGAAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
13654503 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
13654568 AAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
13654633 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
13654698 GCACCCATTGCACATCATGTGCGCACACCCCCCCCGGCCCTCCCGATCGCCGGAACCCCAATGTC
261 GCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCC
* * *
13654763 GCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGC
324 GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *
13654828 ACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCATAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* **
13654893 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCATAAAACGAGCGTGCG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * ** *
13654958 GGCGCTCAGCTGGCCAGAGGGGCGGGAGGTGCAAGCCGGGGATCGGTAGGGTCCCCCTCTACGTG
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTG
* * * * * * * *
13655023 GTGCTGATCTTGCCACCGCAACCCTTGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATC
584 CTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
13655088 CCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGGCGGGC-C-A-----G--AG-G-GACGGGAT
649 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
13655142 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTAGGTGCCA
714 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCA
* * *
13655207 ATGCCATTTTTATGGCTTGTAAAATCATGCAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGG
779 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * ** * * *
13655272 CAGGACGACTCCTTTTTTATTTTTCATGATTTTCAAAACTCTTTGCGGTTTGGGAT
844 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
* * *
13655328 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCCAACTTGGAAGACGTGATCCTTGTATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
13655393 TTGGCATGCACAAATAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGTAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
13655458 AAGTGTCCCTATTCCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
13655523 TTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * ***
13655588 GCACCCATCGCACATCATTTGCGCACACACCCCCGGCCCACCCGATCGTCGGAATCCCAATTATG
261 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCG
* * * * * *
13655653 CCGGTCAGGTTCTCTGACGATGCTCCAGCGATGGTGCCCCGATGAACAAAAATACGGCAACAGCA
325 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
** *
13655718 CATGCCCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
13655783 CTCCATATGCTTAGACTGGGAATGAACCCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
13655848 GCGCTCAGCCGGCCAGAAGGGCGGGATGCACAAG-TCGGGGATCGGCTGGGTACCCCTCTGTGTG
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGGCCGGGTCCCCCTCTGCGTG
* * * *
13655912 CTGCCGATCCTACTACTGCAACCCTCGGTCTGGTCAG-TCTTAGACTGGGAATGAACTCCGTATG
584 CTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
13655976 CCTAAGCCAAATGATGAAACGAGTGGGCAGGCGGGCAGGCGGGCACTACGTCGACCAGAGAGACG
649 CCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * * *
13656041 GGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATATTCATATTTTTGTGT
710 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT
13656106 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-CCTTTCACGTGAAGTTT
775 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAGTTT
* * * **
13656170 CATGGCAAGACGACTCATTTTCGATTTTTCACGATTTTTGAAAGTTTTTGGGGTTCGGGAT
839 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
* *
13656231 TTTTTCAAATTTTTTCGGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTGTATTGTTT
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTT
* *
13656296 -TTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAA
65 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
13656360 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
13656425 TTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * *
13656490 TGCACCCATCGGACATCATGCGGGCACA-CCCCCCAGCCCCCTGATCG-CTGGAACCCCAATGCC
260 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCC
* * * **
13656553 GCCGGTCAGGTTCTCCGGCGATACTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGC
324 GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
** * * * * * *
13656618 ACATGCCCGAGCCGGGCATGTGCTGCTGCAACCTTCGGTCTGATCCGATCTTAAACTAGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
*** * *
13656683 ACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAACGTGCG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * * *
13656748 GGCACTCAACCAGCCAGAGGGGCAGGATACGCAAGCTGGGGATCGACCGGGTCCCCCTCTACATG
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTG
** * * ** *
13656813 CTATCGATCCTACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTCCGTATG
584 CTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
13656878 CCTAAGCCAACCGACGAAACGAGCGGACGGGCGGTCGGGTGGGCGGGCACTACGTCGGCCAGAGA
649 CCTAAGCCAACCGACGAAACGA---G-C--G-GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGA
** * *
13656943 GATAGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
706 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
13657008 GCAT-T-CCAATGCCATTTTTATGGCTTGTAAATTGATACAATGATCCCTTAAGCCTTCACGTGA
771 --ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * ** * *
13657071 AGTTTCATGG-AAGAAGGACTCATTTTCTATTTTCCACGATTTTCAAAACTCTTTGCGGTTCGGG
834 AGTTTCATGGCAAG-ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG
13657135 AT
898 AT
* * * *
13657137 TTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCCAACTTGGAAGACGTGATCATTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
13657202 TTGGCATGCGCAAAAAAATTCAGCTAAAACCTCGAAGTG-ACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
13657266 AAGTGTCCCAATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
13657331 TTAAGGGGGTGTGGGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * **
13657396 GCACCCATCGCACATCATGGGCGCACACCCCCCCCGTCCCCCCGATCGTCGGAACCCTAATATCG
261 GCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
** * * * * *
13657461 TTGGTCAGGTTCTCCGGCGATGCTCCGACGATTGTGCCTCGACGAAGAAAAATGCGGTACCAGCA
325 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * ** *
13657526 CATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCAGTCCAGTTTGATCTTAGACTAGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
13657591 CTCCGTATGCTTAGACTGGGAATAAACTCCATATGCCTAAG-CTAACCCATGAAACAAGCGTGTG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC-AACCCACGAAACGAGCGTGCG
* * * * * * *
13657655 GGTGCTCAGCTGGCCAGAGGGGCGAGATGCGCAAG-TCGGGGATCAGTCGGGTCCCCCTTTGCAT
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGGCCGGGTCCCCCTCTGCGT
* ** * * * * *
13657719 GCTGTCGATCCTGCTATAGCAACCCTCAGT-TCAGTCTGATCTGAGAGTGGGAATGAACTACGTA
583 GCTGCCGATCCTGCTACCGCAACCCTCGGTCTGA-TCTGATCTTAGACTGGGAATGAACTCCGTA
* *
13657783 TGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGACAGGTGGGCACTACGCCGGCCAGAGAGA
647 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-G---GGCGGGCACTACGCCGGCCAGAGAGA
* * *
13657848 CGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTAC
708 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT
* *
13657913 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTT
773 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
*
13657978 TCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTT-AAA------A-----C-----
838 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
*
13658023 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * *
13658088 TTGGCATGCATAAAAACATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
13658153 AGGTGTCCCCATTTCAGACACTTGACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
13658218 TTAAGGTGGTGTAAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
13658283 CCACCCATCGCACATCACGTGCGCACA-CCCCCCGGCCCTTCCGATCGAT-GGAACCTCAATGTC
261 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCG-TCGGAACCCCAATGCC
* * ** *
13658346 GTCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCTAACGAAGAAAAATGCGGCTCCAGC
324 GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* *
13658411 ACATGCCCGAGCCCAGCATGTGTTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * *
13658476 ACTCCATATGCTTAGACTGGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* *
13658541 GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTG
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTG
* * * ** * * * *
13658606 CTGCCGATCCTACTGCCGTAACCCTCGGTCCAATCTGATCTTAAACTAGGAATGAACTACGTGTG
584 CTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13658671 CCTAAGCCAATCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGGCAGAGAGACGGGAT
649 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
13658736 GCGCAAGCCGTGGATCGATAAGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCA
714 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCA
13658801 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
779 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
13658866 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTCCTGTTCGGGAT
844 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
** * ** * *
13658922 TTTTTAAAATTTTTTCAAAAAGAGTTTTAACCCCAAACTTGGTAGATGTGATACTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
13658987 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
13659052 AAGTGTCCCCATTTCAAACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAGATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
13659117 TTAA-GGGGTGTGAGTTCTCAAGGTTTGGTGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
13659181 GCACCCATTGCACATCATGTGCGCACACGCCCCTGGCAGCCCCAATCATCGGAACCCCAATGCCG
261 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCG
* ** * **
13659246 TCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGA-GAAGAAAAATATGGCACCAGC
325 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGC
* * * *
13659310 ACATGCCCGAGCCTAGCATCTTCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * * * *
13659375 ACTCTGCATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCG
** * * * * *
13659440 ACCGCTCAGCCGGCCAGAGGGGCGGAATGCGCAAGCTGGGGATCGGCTGGGTCACCCTTTACGTG
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTG
* * * * * **
13659505 CTGCTGATCCTGCTACCACATCCTTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
584 CTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
13659570 CCTAAGCCAATCGACGAAATGAATGGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGAT
649 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * *
13659635 TCGCAAGCCATGGATCGA-AGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATTTTCCA
714 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCA
*
13659699 ATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
779 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
** * *
13659764 CAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGATTCGAGAT
844 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
* ** ** * *
13659820 TTTTT-TAATTTTTTCAAAAGGAGTTTTGGTGCCAAACTTGGTAGATGTGATCCTTGTATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
13659884 TTGGTACGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
13659949 AAGTGTCCCCATTTGAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
13660014 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGCA-A-GGGGCCAATATAAGGG-CAAGTACC
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG-ATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
13660076 AGCACCCATCGCACATCATGTGCGCATAACCCCCCCCGGCCCCCCTATCATCGGAACCCCAAT--
260 AGCACCCATCGCACATCATGTGCGCA-CA-CCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
* * * ** * *
13660139 -ACC-GTC-GG---T-C-AAG-TTCTCCGGCGATGGTGCCCCGGTGAAGAAAAATACGACACCAG
323 CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * * **
13660195 CACATGCCCAAGCCCAGCATGTACTACCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATG
388 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
* * * * *
13660260 AACTCCGAATGCTTCGATTGAGAATGAACTCCATATGCCTAAGTCAAACCACGAAACGAGCGTGC
453 AACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * *
13660325 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-TCAGAGATCGGCCGGGTCCCCCTCTGCA
518 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGGCCGGGTCCCCCTCTGCG
* * * * ** *
13660389 TGCTCCCAATCTTGCTGCCGCAACCCTTTG-CTTGATCCGATCTTAGACTGGGAATGAACTCCGT
582 TGCTGCCGATCCTGCTACCGCAACCCTCGGTC-TGATCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
13660453 ATGCCTAAGCCAATCGACGAAACAATCGGGCGGGCGGGC-GGCACTACGTCGGCCAGAGAGACGG
646 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* *
13660517 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
711 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
* * * *
13660582 CCAATGCCATTTTTAAGGCTTGTAAATTCGTAGAATGGTCCCGTAAGCCTTCACGTGAAGTTTCA
776 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
** * *
13660647 TGGCAAGACGACTTATTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGTTCGAGAA
841 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
*
13660705 TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
13660770 TTGGCATGCATAAACAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
13660834 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
13660899 TTAAGGGGGTGTGACTTCTCAAGGTTTGAAGATGGATAGGGGGCCAATATAAGGGCCAAGTAACA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * ** *
13660964 GCACCCATCGCACATCATGTGCGCA-A-ACCCCCGGCCCCCCCGATCATCAAAACCCCAATACCG
261 GCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCG
* * *
13661027 TCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCACGACGAAGAAAAATGCGGCACCAGCA
325 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * ** * *
13661092 CATGCTCGAGCGCAGCATGTGCTGCTGCAACCCTCCGTTTGGTCTGATCTTAGACTAGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
*
13661157 CTCCGCATGC
455 CTCCGTATGC
13661167 CTAAGCCAAC
Statistics
Matches: 7455, Mismatches: 936, Indels: 277
0.86 0.11 0.03
Matches are distributed among these distances:
882 186 0.02
883 10 0.00
884 22 0.00
885 173 0.02
886 961 0.13
887 208 0.03
888 50 0.01
889 293 0.04
890 446 0.06
891 193 0.03
892 122 0.02
893 5 0.00
894 10 0.00
895 260 0.03
896 384 0.05
897 218 0.03
898 299 0.04
899 809 0.11
900 268 0.04
901 277 0.04
902 68 0.01
903 608 0.08
904 8 0.00
905 191 0.03
906 569 0.08
907 485 0.07
908 310 0.04
909 22 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
GCCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
Found at i:13659411 original size:26 final size:26
Alignment explanation
Indices: 13659359--13659411 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13659349 CCGGTCCGAT
* *
13659359 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
*
13659385 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGCATG
13659411 C
1 C
13659412 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:13663313 original size:26 final size:26
Alignment explanation
Indices: 13663284--13663336 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13663274 CTGATCCGAT
13663284 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13663310 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13663336 C
1 C
13663337 CTAATTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13664130 original size:11 final size:11
Alignment explanation
Indices: 13664109--13664142 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
13664099 GGTCAGGTTC
*
13664109 TCCGGCAATGG
1 TCCGACAATGG
*
13664120 TCCGACGATGG
1 TCCGACAATGG
13664131 TCCGACAATGG
1 TCCGACAATGG
13664142 T
1 T
13664143 GGCCCGACGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (11 bp):
TCCGACAATGG
Found at i:13664250 original size:26 final size:26
Alignment explanation
Indices: 13664221--13664273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13664211 TTGGTCCGAT
*
13664221 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13664247 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13664273 C
1 C
13664274 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13665148 original size:26 final size:26
Alignment explanation
Indices: 13665119--13665171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13665109 CTGGTCCAAT
*
13665119 CTTAGACTGTGAATGAATTCCATATG
1 CTTAGACTGGGAATGAATTCCATATG
*
13665145 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAATTCCATATG
13665171 C
1 C
13665172 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCATATG
Found at i:13666055 original size:26 final size:26
Alignment explanation
Indices: 13666019--13666074 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
13666009 TCGATCTGAT
13666019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13666045 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13666071 CTTA
1 CTTA
13666075 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13666656 original size:899 final size:893
Alignment explanation
Indices: 13662468--13667995 Score: 6470
Period size: 899 Copynumber: 6.1 Consensus size: 893
13662458 ATGTGCAGGT
* * * * * * *
13662468 GCTCAGCC-GACCAGAGGGGCAAGATGGGCAAGCCGGGGGTCGATCGGGTTCCCCTTTGCGTGCT
1 GCTCAGCCTG-CCAGAGGGGC-GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCT
* * * * * * *
13662532 ACCAATCCTACTG-CTGCAACCCTCGGTCCGGTCTGATCTTAGACGGGGAATGAACTCCGTATGC
64 GCCGATCCTGCTGCCT-CAACCCTCAGTCTGTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
** * * * *
13662596 CTAAGCCAACC-AACAAA--A-CGAGTGGG-TG--GGCGGGCACTACGCCGGCCAGAGAGACGGG
127 CTAAGCCAACCGATGAAACGAGCGGGCGGGCAGCAGGCGGGCACTACGCC-ACCAGAGAGACGGG
* * * *
13662654 ATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCAAATTTTTGCATGC
191 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * * *
13662719 GAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCCTCACGTGAAGCTTCAT
256 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
13662784 GGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAA
321 GGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAA
* ** * * *
13662849 AATTTTATCGGAAATAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGAAT
386 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
13662914 GCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTTACCATTTGAAAAAAGTGTC
451 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
13662979 CTCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
516 CACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
13663044 GGTGTGAGTTCTTGAGCTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCA
581 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
13663109 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGTCGTCGGTCAG
646 TCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * * * * * *
13663174 GTTCTCCGGTGATGCACCGATGTTGGTGCCCCGATGAAGAAAAATGTGACACCAGCAAATGCTCG
710 GTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
13663239 AGCCCAGCATATGCTGCCCCAACCCTCGGTCTGATCTGATCCGATCTTAGACTGGGAATGAACTC
775 AGCCCAGCATGTGCTGCCGCAA-CC-C--TC-GATC---T--GATCTTAGACTGGGAATGAACTC
*
13663304 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAATGAGCGTGCGGGC
830 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* *
13663368 GCTCAG-CTGGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCT
1 GCTCAGCCT-GCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCT
* *
13663432 GCCGATCCTGCTG-CTGCAACCCTCAGTCTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGC
64 GCCGATCCTGCTGCCT-CAACCCTCAGTCTGTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
* *
13663496 CCAAGCCAACCGATGAAACGAGTGGGCGGGCGGTCGGGCAGTCGGGCGGGCGGGCACTACGCCAG
127 CTAAGCCAACCGATGAAACGA----GC--G-GG-CGGGCA-----GCAGGCGGGCACTACGCCA-
*
13663561 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCA
178 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
13663626 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
243 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
** *
13663691 CGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTT
308 CGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTT
* * * *
13663756 TGGGATTTTTTAAAATTTTTTCGAAAGGAGATTTGGCCCCAAACTTGGTAAACGTGATCCTTGTA
373 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
13663821 TTTTTGTTGGCATGAACAAAAAAATTGAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATT
438 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
13663886 TGAAAAAAGTGTCC-CATTTCAGACACTTTAATGGCTACT-GCAGCAAACATGTAAAATCTCAAA
503 TGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
13663949 TGCTCTTTAATGGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGTCAAT
568 TG--C---------TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
** * *
13664014 ATAAGGGAAAAATACCAGCGCCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATC
622 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGG-CCCCCCGATC
* * * *
13664079 GTTGGAACCTCAATGCCGCCGGTCAGGTTCTCCGGCAATGGTCCGACGATGGTCCGACAATGGTG
684 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT-C--CGA---T--G---ATGGTG
* * * * * * *
13664144 GCCCGACGAAAAAAAATGCAGCACC-GTCACATGCTCAAGCCCAGCATGTGCTACCACAACCCTC
738 CCCCGACGAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
13664208 GGTTTGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATG
802 -----GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
13664273 CCTAAGTCAACCAACGAAACGAGCGTGCGGGC
862 CCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* * * * * *
13664305 GCTCAGCC-GACCAGAGGGGCCGGATGCGCAAGCCGAGGATCAGTCAGGTCCCCCTATTCATGCT
1 GCTCAGCCTG-CCAGAGGGG-CGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCT
* * * * * *
13664369 ACCGATCTTGCTGCCACAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
64 GCCGATCCTGCTGCCTCAACCCTCAGTCT-GTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
* *
13664433 CTAAGCCAATCGATGAAACGAGCGGGCGGGC-G--GGCGGGCACTACGCCAGCCAGAGAGATGGG
127 CTAAGCCAACCGATGAAACGAGCGGGCGGGCAGCAGGCGGGCACTACGCCA-CCAGAGAGACGGG
* * *
13664495 ATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
191 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * *
13664560 TAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGTAGTTTCAT
256 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * ** *
13664625 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAA
321 GGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAA
* * * **
13664690 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGTTAGACATGATCCTCATATTTTTGTTGGCAT
386 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
13664755 GCA-TAAAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
451 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
13664819 CACATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG
516 CACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * ** **
13664884 GGTGTTAGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGAAAAGTACCAGCGTCCA
581 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
13664949 TTGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG-CTGGAACCCCAATGCCGCCAGTCA
646 TCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCA
* * *
13665013 GGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCC
709 GGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
13665078 GAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGTGAATGAATTCCATA
774 GAGCCCAGCATGTGCTGCCGCAACCCTCGATCT-G----ATCTTAGACTGGGAATGAACTCCGTA
* * * *
13665143 TGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGC
834 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* * * * *
13665203 GCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCTGGCGATCGATCGGGTCCCCCTCTACGTGCTG
1 GCTCAGCCTGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG
* * * * * *
13665268 CCCATCCTGCTACCACAACCCTCGGTCTGGTCCGACCTTAGACTGGGAATGAACTCCGTATGCCT
65 CCGATCCTGCTGCCTCAACCCTCAGTCT-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** *
13665333 AAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGA
129 AAGCCAACCGATGAAACGAGCGGGCGGGCA-GCAGGCGGGCACTACG-CCACCAGAGAGACGGGA
* * * *
13665398 TTCACAAGCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACACTCTTCATATTTCTGCGTGC
192 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA-TCTTCATATTTCTGCATGC
* * * * *
13665463 CAATGCGATTTTTTTGGCTTGTAAATTCGTATAATGGTCCCTTAAGCCTTCACGTGTAGTTTCAT
256 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * * * *
13665528 TGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTTCAGGATTTTTTTA
321 GGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAA
* * * * * *
13665593 AATTTTTTCGGAAGGATTTTTGGCCCGAAACATGGTAGACATGATCCTTGTATTTTTTTTGGCAC
386 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
13665658 ACACAAAAAAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
451 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
13665723 CCCATTTCAGACACTTTAATGGGTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
516 CACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * *
13665788 GGTGTGAGTTCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCTAGCACCCA
581 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * *
13665853 TCGCACATCATGTGCTTACACCCCCACGGCCCCCGCGATCGTCGGAACCTCAATGCTGCCGGTCA
646 TCGCACATCATGTGCGCACACCCCC-CGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * * *
13665918 GGTTCTCTGGCGATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGCCGCACTAGCACATGCCC
709 GGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* *
13665983 GAGCCCAGCATGTGCTGTCGCAATCCTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
774 GAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
13666048 AGACTGGGAATGACCTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTACGGGC
839 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* * * ** * * *
13666103 ACTCAGCCTGCTAGAGGGGCGGTATGCGTAAGCCGATGATTGGCCGGGTCCTCCTCTACGTGCTG
1 GCTCAGCCTGCCAGAGGGGCGG-ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG
* ** * * * * *
13666168 CCGGTCCTATTGCCTTAACCCTCAGACTGATTCGATCTTGGATTGGGAATGAACTTCGTATGCCT
65 CCGATCCTGCTGCCTCAACCCTCAGTCTG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * * * *
13666233 AAGCCAACCGATGAAACGAACGGGCGGGCAAGCAGAAGGGCATTATGTCAACATGAGAGACGGGA
129 AAGCCAACCGATGAAACGAGCGGGCGGGC-AGCAGGCGGGCACTACGCCACCA-GAGAGACGGGA
*
13666298 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
192 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
13666363 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATG
257 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
13666428 GCAAGACGACTTGTTTTCTATTTTTCATGATTTTCGAAACGTTTTGCGGTTCGGGATTTTTTAAA
322 GCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAA
* ** *
13666493 ATTCTTTCGGAAGGAGTTTTCACCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATG
387 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
13666558 CACAAAACAATTCAGCTGAAAACTCGAAGGGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCC
452 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
13666623 ACATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAACTCTCAAATCCTCTTTAAGTGG
517 ACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
13666688 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
582 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
13666753 CGCACATCATGTGCACACACCCCCCCGGCCCCCTCGATTGCCAGAACGCCAATACCGCCGGTCA-
647 CGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAG
*
13666817 --------G-G-T--T-C--------T---CCGACGAAGAAAAATGCGGCACCAGTACATGCCCG
710 GTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * *
13666858 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGCAATGAACTCTGTAT
775 AGCCCAGCATGTGCTGCCGCAACCCTCGATC---T--GATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
13666923 GCTTAGACTGGCAATCAACTCCGTATGGCTAAGTCAACCCATGAAATGAGCATGCGGGA
835 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* * *
13666982 GCTCAG-CTGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCAGTCAGGTCCCCCT-AAGCGTGC
1 GCTCAGCCTG-CCAGAGGGGCG-GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTA-CGTGC
* * * * *
13667045 TGCCGATCCTACT-ACTGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
63 TGCCGATCCTGCTGCCT-CAACCCTCAGT-CTGTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
13667109 CCTAAGCCAACCGACGAAACGAGAGGGCGGGC-G-A-G-GGGCACTACACGGGCCAGAGAGACGG
126 CCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGCAGGCGGGCACTACGC-CACCAGAGAGACGG
*
13667170 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATG
190 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
13667235 CCAATGCCATTATTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
255 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * *
13667300 T--C---TC-A----TTTTCTATTTTTCACAATTTTCAAAACATTTTGTGGTTCAGCATTTTTTA
320 TGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* *
13667355 AAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTGTT-GCA
385 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
13667419 TGTACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
450 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
13667484 CCACATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAACTCTCAAATCCTCTTTAAGG
515 CCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
13667549 GGGTGTGGGTTCGCGAGGTTTGATGAGGGATAGAGGGCCAATCTAAGGGCCAAGTACCAGCACCC
580 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
13667614 ATCACACAT-ATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCTGCTGGTCAA
645 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * ** *
13667678 GTTCTCCGGTGATGCTCCAACGATCATGCCCCGATCGAAGAAAAATGCGGCACCAGCACACGCCC
710 GTTCTCCGGCGATGCTCCGATGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * * * * *
13667743 AAGCCTAACATGTGTTGCTGTAACCCTCGGTCCGACCTGATCTTAGATTGGGAATGAACTCCGTA
774 GAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGATCTGATCTTAGACTGGGAATGAACTCCGTA
* *
13667808 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGT
834 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* * * * * * * * ** *
13667868 GCTCAGTCGGCTAGAGGGGCGGGATGCACAAGCCTGGGATCGATTGGGTCCCCCTTTGGGTGCTA
1 GCTCAGCCTGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG
* * * * * * * *
13667933 TCGATCCTACTGCCGCAACCCTCGGTCCGATCAGATCTTAAACTGGGAATGAACTCTGTATGC
65 CCGATCCTGCTGCCTCAACCCTCAGTCTGTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
13667996 TTAGACTGGG
Statistics
Matches: 3999, Mismatches: 497, Indels: 278
0.84 0.10 0.06
Matches are distributed among these distances:
860 23 0.01
861 12 0.00
862 10 0.00
863 193 0.05
864 98 0.02
868 1 0.00
869 2 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 1 0.00
874 205 0.05
875 2 0.00
876 1 0.00
877 3 0.00
878 6 0.00
879 197 0.05
880 3 0.00
882 1 0.00
885 8 0.00
886 215 0.05
887 6 0.00
888 3 0.00
889 1 0.00
890 2 0.00
891 3 0.00
893 4 0.00
894 1 0.00
897 1 0.00
898 266 0.07
899 423 0.11
900 389 0.10
901 7 0.00
902 68 0.02
903 199 0.05
904 199 0.05
905 111 0.03
906 4 0.00
908 2 0.00
909 45 0.01
910 4 0.00
911 93 0.02
912 3 0.00
918 26 0.01
919 24 0.01
920 384 0.10
921 296 0.07
922 25 0.01
923 1 0.00
929 91 0.02
930 7 0.00
931 48 0.01
932 1 0.00
933 2 0.00
934 3 0.00
936 2 0.00
937 205 0.05
938 6 0.00
939 1 0.00
940 1 0.00
941 3 0.00
942 55 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GCTCAGCCTGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGC
CGATCCTGCTGCCTCAACCCTCAGTCTGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGATGAAACGAGCGGGCGGGCAGCAGGCGGGCACTACGCCACCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
CGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTGCCGCAACCCTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
Found at i:13666927 original size:26 final size:26
Alignment explanation
Indices: 13666898--13666949 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13666888 CTGGTCCGAT
* *
13666898 CTTAGACTAGCAATGAACTCTGTATG
1 CTTAGACTAGCAATCAACTCCGTATG
*
13666924 CTTAGACTGGCAATCAACTCCGTATG
1 CTTAGACTAGCAATCAACTCCGTATG
13666950 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGCAATCAACTCCGTATG
Found at i:13667813 original size:26 final size:26
Alignment explanation
Indices: 13667784--13667836 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13667774 CCGACCTGAT
*
13667784 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13667810 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13667836 C
1 C
13667837 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13668096 original size:185 final size:185
Alignment explanation
Indices: 13667764--13668179 Score: 534
Period size: 185 Copynumber: 2.2 Consensus size: 185
13667754 GTGTTGCTGT
* *
13667764 AACCCTCGGTCCGACCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* ** * **
13667829 CTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGGCTAGAGGGGCGGGATG
66 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCAAGATG
* * * * * *
13667894 CACAAGCCTGGGATCGATTGGGTCCCCCTTTGGGTGCTATCGATCCTACTGCCGC
131 CACAAGCCTGCGATCGATCGAGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGC
* * *
13667949 AACCCTCGGTCCGATCAGATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-
* * *
13668014 TCAT-T-TGCCTAAGTCAACCCTCGAAACGATCGTGCGGGCACTCAGTTGGCCAGAGGGGCAAGA
65 TC-TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCAAGA
* * *
13668077 TGCGCAAGCC-GACGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
129 TGCACAAGCCTG-CGATCGATCGAGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGC
* * *
13668134 AACCTTCAGTCC-AGTCTGATCTTAGACTGGGAATGAAATCCGTATG
1 AACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATG
13668180 ACTAAGCCAA
Statistics
Matches: 198, Mismatches: 29, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
184 2 0.01
185 192 0.97
186 3 0.02
187 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCAAGATG
CACAAGCCTGCGATCGATCGAGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGC
Found at i:13669619 original size:26 final size:26
Alignment explanation
Indices: 13669583--13669634 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13669573 CTGGTCCAAT
13669583 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13669609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13669635 TCTAACTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13670513 original size:4 final size:4
Alignment explanation
Indices: 13670504--13670529 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
13670494 GACGAAATGT
13670504 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
13670530 ACTACATCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:13671255 original size:26 final size:26
Alignment explanation
Indices: 13671178--13671247 Score: 133
Period size: 25 Copynumber: 2.7 Consensus size: 26
13671168 CCTGTCAGAT
13671178 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13671204 CTTAG-CTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13671229 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
13671248 TCGTATGCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 25 0.58
26 18 0.42
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13672136 original size:26 final size:26
Alignment explanation
Indices: 13672100--13672151 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13672090 TGATCCAATT
*
13672100 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
13672126 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
13672152 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:13672735 original size:904 final size:895
Alignment explanation
Indices: 13670427--13673016 Score: 3305
Period size: 904 Copynumber: 2.8 Consensus size: 895
13670417 GCGCAGCATA
* * *
13670427 TGCTGCCGCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
13670492 TTGACGAAATGTGCGGGCGGGCGGGCGGGCGGGCGGGCACTAC-ATCGACCAGAGAGACGGGATG
66 CCGACGAAA----CGAGCGAGCGGGCGGGC-GGCGGGCACTACGCT-GGCCAGAGAGAC-GGATG
* * * * *
13670556 CGTAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACGTCTCCATA-TTTCTGCCTGCCA
124 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCA
*
13670620 ATGCCATTTTTATGGCGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
189 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
13670685 CGAGACGACTCGTTTTCTATTTTTCACGATTTTTGACACTTTTTGTGGTTCGAGA-TTTTTAAAA
254 CAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA
* * *
13670749 TTTTTTCGAAAGGGATTTTTGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
319 TTTTTTCG-GA-GGATTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
*
13670814 AC-AAAACAATTCAG-TAAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTC
381 ACAAAAAC-ATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
13670877 ACCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTGAGGG
444 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
* *
13670942 GGTGTGAGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCA
509 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCA
* * * *
13671007 TCGCATATCATGTGCGCACTCCCTCCCCGACCCCCCCGATCACCGGAACCCCAATGCTGTCGGTC
573 TCGCACATCATGTGCGCAC-ACC-CCCCG-GCCCCCCGATCGCCGGAACCCCAATGC-GTCGGTC
* * * *
13671072 GGGTTCTCTGATGTTGCTCCGATGATGG-GCCCCGATGAAGAAAAATACGGCACCAGCACATGCT
634 AGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCC
* * * *
13671136 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCTGTCAGATCTTAGACTGGGAATGAACTCCAT
699 CGAGCCCAGCATGTGATGCCGCAACCCTCAGT-C--T--GATC-----C----AAT----T--TT
* *
13671201 ATGCTTAGCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAACTCAAC
744 A-G---A-CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAACTCAAC
* * *
13671266 CCATGAAATAAGCGTTCGGGCGCCTAGCTTGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCATC
804 CCATGAAATAAGCGTGCGGGCGCCTAGCCTGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAT-
* *
13671331 CGGGTCCCCCTCTACGTGCTGCCGATCC
868 CGAGTCCCCCTCTACGTGCTGCCAATCC
* * * * *
13671359 TACTGCCGCAACCCTCGATTCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13671424 CCGACG-AA--A-CGAGCGGGC--G-GGCGGGCACTATGCCGGCCTGAGAGACGAGATGCGCAAG
66 CCGACGAAACGAGCGAGCGGGCGGGCGGCGGGCACTACGCTGGCCAGAGAGACG-GATGCGCAAG
* * **
13671482 CCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTT-TGTGTGCCAATGCCA
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGCCA
*
13671546 TTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
13671611 AAGTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
260 AACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* *
13671676 CGGAAGGATTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA
325 CGG-AGGA-TTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
13671741 AAAATCAGCTAAAAACTCGAAGTGTACAAGACTTTTG-GACCATTTGAAAAAAGTGTCCCCATTT
387 ACATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
13671805 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTTATATGCTCTTTAAGAGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
13671870 GGTCTCGGGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATTGCACA
516 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC-CATCGCACA
* * *
13671935 TCATGTGCGCACACCCCCGTCGGCCCCCTGATCGCCGGAACCCCAATGTCATCGGTCAAGTTCTC
580 TCATGTGCGCACACCCCC--CGGCCCCCCGATCGCCGGAACCCCAATG-CGTCGGTCAGGTTCTC
* * * * *
13672000 CGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACACGCCCGAGCCCT
642 CGATGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * *
13672065 GTATGTGATGCTGCAACCCTCAGTCTGATCCAATTTTAGACTGGGAATGAACTCCGTATGCTTAG
707 GCATGTGATGCCGCAACCCTCAGTCTGATCCAATTTTAGACTGGGAATGAACTCCATATGCTTAG
* *
13672130 ACTGGGAATGAACTCCATATGCCTAACTCAACCCATGAAATGAGCGTGCGGGCG-ATCAGCCTGC
772 ACTGGGAATGAACTCCATATGCCTAACTCAACCCATGAAATAAGCGTGCGGGCGCCT-AGCCTGC
* * * * * *
13672194 CAGAGGGGCAGGATTCGCATGCCGGTGATCGGT-GAGTCCCCCTCTGCGTGTTGCCAATCC
836 CAGAGGGGCAGGATGCGCAAGCCGGGGATC-ATCGAGTCCCCCTCTACGTGCTGCCAATCC
* *
13672254 TGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
13672319 CCGACGAAACGAGCGAGCGGGCGGGCGAGCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAA
66 CCGACGAAACGAGCGAGCGGGCGGGCG-GCGGGCACTACGCTGGCCAGAGAGAC-GGATGCGCAA
* *
13672384 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGGC
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGCC
** * *
13672449 A-TTTTATTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAAGAGGTTTGATGGCAAG
194 ATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
13672513 ACAACTCATTTTCTATTTTTCACGATTTTTAAAAATTTTTACGGTTCGAGATTTTTTAATATTTT
258 ACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
*
13672578 TTAGGAGGAAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
323 TTCGGAGG-A-TTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
13672643 AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATT
385 AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
13672708 TCAGACAGTTTAATTGCTACAGGCAGCATACCTATAAAATCTCAAATGCTCTTTAAGGGGGTTTG
450 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13672773 AGTTCTTGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCAC
515 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-ATCGCAC
*
13672838 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
579 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATG-CGTCGGTCAGGTTCTC
* ** * * **
13672903 CGATGATGCTCCTACAATGGTGCCCCG-TCGAA-AAAAATACGACACCAGCAAATGCCTAAGCCC
642 CGATGATGCTCCGATGATGGTGCCCCGAT-GAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * *
13672966 AGCATGTGAAGCCGCAACCCTCAGTCCGATCCGATCTTAGACT-GGAATGAA
706 AGCATGTGATGCCGCAACCCTCAGTCTGATCCAATTTTAGACTGGGAATGAA
13673017 ATTTGTATGC
Statistics
Matches: 1456, Mismatches: 169, Indels: 97
0.85 0.10 0.06
Matches are distributed among these distances:
895 88 0.06
896 108 0.07
897 2 0.00
898 1 0.00
899 9 0.01
900 1 0.00
901 11 0.01
902 66 0.05
903 156 0.11
904 366 0.25
907 3 0.00
911 1 0.00
916 4 0.00
918 1 0.00
919 4 0.00
920 247 0.17
921 304 0.21
922 13 0.01
924 8 0.01
931 2 0.00
932 61 0.04
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGGCGGGCGGCGGGCACTACGCTGGCCAGAGAGACGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACA
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
GGAGGATTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCGTCGGTCAGGTTCTCCGATGATGC
TCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGAT
GCCGCAACCCTCAGTCTGATCCAATTTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
GAACTCCATATGCCTAACTCAACCCATGAAATAAGCGTGCGGGCGCCTAGCCTGCCAGAGGGGCA
GGATGCGCAAGCCGGGGATCATCGAGTCCCCCTCTACGTGCTGCCAATCC
Found at i:13673667 original size:716 final size:717
Alignment explanation
Indices: 13672259--13673771 Score: 2234
Period size: 716 Copynumber: 2.1 Consensus size: 717
13672249 AATCCTGCTA
* *
13672259 CCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CCGCAACCCTCG-TCCGGTCCGATCTTAGACTAGGAATGAAATCCGTATGCCTAACCCAACCGAC
* *
13672324 GAAACGAGCGAGCGGGCGGGCGAGCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGT
65 GAAACGAGCGAGCGGACGGGCGAGCGAGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGT
* * * *
13672389 GGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGGCATTTT
130 GGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTACATGCCAATGCCATTTT
* * * *
13672454 ATTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAAGAGGTTTGATGGCAAGACAACT
195 AATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACAAGAAGTTTCATGGCAAGACAACT
13672519 CATTTTCTATTTTTCACGATTTTTAAAAATTTTTACGGTTCGAGATTTTTTAATATTTTTTAGGA
260 CATTTTCTATTTTTCACGATTTTTAAAAATTTTTACGGTTCGAGATTTTTTAATATTTTTTAGGA
* * * * *
13672584 GGAAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACAT
325 GGAAGTTTTGGCCCCAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
13672649 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGAC
390 TCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
13672714 AGTTTAATTGCTACAGGCAGCATACCTATAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCT
455 AGTTTAATGGCTACAGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** * * *
13672779 TGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATG
520 CAAGGTTTGATGAGGGACAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
13672844 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGA
585 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGA
*
13672909 TGCTCCTACAATGGTGCCCCGTCGAAAAAAATACGACACCAGCAAATGC-CTAAGCCCAGCATGT
650 TGCTCCTACAATGGTGCCCCGTCGAAAAAAATACGACACCAGCAAATGCTC-AAGCCCAGCATCT
13672973 GAAG
714 GAAG
* **
13672977 CCGCAACCCTCAGTCCGATCCGATCTTAGACT-GGAATGAAATTTGTATGCCTAACCCAACCGAC
1 CCGCAACCCTC-GTCCGGTCCGATCTTAGACTAGGAATGAAATCCGTATGCCTAACCCAACCGAC
* * * *
13673041 GAAACGAGCGGGCGGACGGGCGGGCGAGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGT
65 GAAACGAGCGAGCGGACGGGCGAGCGAGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGT
*
13673106 GGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTACGTGCCAATGCCATTTT
130 GGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTACATGCCAATGCCATTTT
*** **
13673170 AATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACT
195 AATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACAAGAAGTTTCATGGCAAGACAACT
* * * * *
13673235 CATTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGGGATTTTTTTAA-ATTTTTTTGG
260 CATTTTCTATTTTTCACGATTTTTAAAAATTTTTACGGTTCGAGA-TTTTTTAATATTTTTTAGG
*
13673299 AAGG-ATTTTTGGCCCCAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
324 -AGGAAGTTTTGGCCCCAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
13673363 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTATGACCATTTTAAAAAAGTGTCCCTATTTCAG
388 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
13673428 AC-GCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGT
453 ACAG-TTTAATGGCTACAGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
13673492 TCTCAAGGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
517 TCTCAAGGTTTGATGAGGGACAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
13673557 ATGTGCGCACACCCGCCGG-CCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
582 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * * *
13673621 TGATGCTCCGT-CAATGGTGCCCCGTCGAAGAGAAATGCGGCACCAGCACATGCTCGAGCCCAGC
647 TGATGCTCC-TACAATGGTGCCCCGTCGAA-AAAAATACGACACCAGCAAATGCTCAAGCCCAGC
**
13673685 ATCTGCTG
710 ATCTGAAG
* * * * * ** *
13673693 CCCCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCC-TAGGCCTAAGTCAACCCAC
1 CCGCAACCCTC-GTCCGGTCCGATCTTAGACTAGGAATGAAATCCGTATGCCTAACCCAACCGAC
*
13673757 GAAACGAGCGTGCGG
65 GAAACGAGCGAGCGG
13673772 GTGCTCAACC
Statistics
Matches: 712, Mismatches: 75, Indels: 18
0.88 0.09 0.02
Matches are distributed among these distances:
715 72 0.10
716 463 0.65
717 147 0.21
718 29 0.04
719 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (717 bp):
CCGCAACCCTCGTCCGGTCCGATCTTAGACTAGGAATGAAATCCGTATGCCTAACCCAACCGACG
AAACGAGCGAGCGGACGGGCGAGCGAGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTG
GAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTACATGCCAATGCCATTTTA
ATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACAAGAAGTTTCATGGCAAGACAACTC
ATTTTCTATTTTTCACGATTTTTAAAAATTTTTACGGTTCGAGATTTTTTAATATTTTTTAGGAG
GAAGTTTTGGCCCCAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
GTTTAATGGCTACAGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
AAGGTTTGATGAGGGACAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGAT
GCTCCTACAATGGTGCCCCGTCGAAAAAAATACGACACCAGCAAATGCTCAAGCCCAGCATCTGA
AG
Found at i:13674497 original size:11 final size:11
Alignment explanation
Indices: 13674481--13674507 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
13674471 CGGTCAGGTT
13674481 CTCCGGTGATG
1 CTCCGGTGATG
13674492 CTCCGGTGATG
1 CTCCGGTGATG
13674503 CTCCG
1 CTCCG
13674508 ACGATGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.33, G:0.33, T:0.26
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:13675038 original size:912 final size:899
Alignment explanation
Indices: 13672980--13676281 Score: 4261
Period size: 867 Copynumber: 3.7 Consensus size: 899
13672970 TGTGAAGCCG
* * * * * * *
13672980 CAACCCTCAGTCCGATCCGATCTTAGACT-GGAATGAAATTTGTATGCCTAACCCAACCGACGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
* * * *
13673044 ACGAGCGGGCGGACGGGCGGGCGAGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAGC-GGC-G-CAGGCGGGCGGGCACTAC-TCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGA
* * * *
13673109 ACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTAATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
13673174 GCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
13673239 TTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTGGAAGGA
257 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
* * *
13673304 TTTTTGGCCCCAAAC-TAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
322 GTTTTGTCCCCAAACTTA-GAAGAC-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
13673368 GCTAAAAACTCGAAGTGTACAGGATTTTATGACCATTTTAAAAAAGTGTCCCTATTTCAGACGCT
385 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* **
13673433 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCAA
450 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
* * *
13673498 GGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * *
13673563 GCACACCCGCCGGCCCCCCGATTGTCGGAACCCCAATGCCGTCGG----TCAGGTTCTCCGATGA
580 GCACACCCCCCGGCCCCCCGATCG-CGGAACCCCAATGCCGTCGGTCAATCAGGTTCTCCGGTGA
* * * * * *
13673624 TGCTCCGTCAATGGTGCCCCGTCGAAGAGAAATGCGGCACCAGCACATGCTCGAGCCCAGCA--T
644 TGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
13673687 -CTGCTG---CCC-CA----A--CC---CT----C--GG-TTCG--GTCCG-AT-CTTAGACTGG
709 CCTGCTGTAACCCTCAGTCCAGTCCAATCTCAAACTGGGAAT-GAACTCCGTATGCTTAGACTGG
* *
13673727 GAATGAACTCC-TAGGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGG
773 GAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAGG
* * * * * * * *
13673791 GGTGGGATGT-GTAAGCTGGGGATCGACCGGGTGCCCCTCTGTGTGCTGCCGATCCTGCTGCTA
838 GGCGGGAT-TCGCAAGCTGGGGATCG-GCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCA
* * ** * * * *
13673854 CAATCCTTGGTCTGCCCTGATCTTAGAATGGGAATGAAC-TCTGTATACCTAAGCCATCCGATGA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGA
* * * *
13673918 AACGA-----GCAGGCGGGCGGGCACTACGCCGACCTGAGAGACGGGATGCGCAAGCCGTGGATC
65 AACGAGCGGCGCAGGCGGGCGGGCACTAC-TCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATC
* *
13673978 GATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
13674043 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGGCTCGTTTT
194 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* **
13674108 CTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTTAATTTTTTTGGAAGGAGT
259 CTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
* * *
13674173 TTTGTCCCCAAACTTGGAAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCT
324 TTTGTCCCCAAACTTAGAAGAC-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
13674238 AAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
13674303 ATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
** *
13674368 TTGATGAGGGATA-GGGGCCAATATAAATGCCAAGTACCAGCACCCATCTCACATCATGTGCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* *
13674432 CACCCCCCGGCCCCCCGATCGCGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCG
583 CACCCCCCGGCCCCCCGATCGC-GGAACCCCAATGCCGTCGGTCA----ATCAGGT--T-CTCCG
* * *
13674497 GTGATGCTCCGACGATGGTG-CCTCGGTGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCTAG
640 GTGATGCTCCGACGATGGTGCCCT-GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * ***
13674561 CATGTGCTGCTGTAACCCTCGGTCCAGTCCGATCTTGGACTGGGAATGAACTCCGTATGCTTAGA
704 CATGTCCTGCTGTAACCCTCAGTCCAGTCCAATCTCAAACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
13674626 CGGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGGCCA
769 CTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCA
* * * * * * *
13674691 AAGGGGCAGGATTCACAAGCCGAGGATCGGCGAGTCCCCCTCTGCGTGCTACCAATCCTACTACC
834 AAGGGGCGGGATTCGCAAGCTGGGGATCGGCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCC
*
13674756 G
899 A
* *
13674757 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGTATGAACTTCGTATGCCTAAGCCAACCAACGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
*
13674822 ACGAGCGGGCGGGCAGGCGGGCGGGC-CTTACTCTGGCCAGAGAGATGGGATGCGCAAGCCGTGG
66 ACGAGC-GGC--GCAGGCGGGCGGGCAC-TACTC-GGCCAGAGAGAAGGGATGCGCAAGCCGTGG
13674886 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTA
126 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTA
13674951 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
190 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
**
13675016 TTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAG
255 TTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAG
* * *
13675081 GGGTTTTGGT-CCCAAACTTAGTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAGAAA-
320 GAGTTTT-GTCCCCAAACTTAGAAGAC-TGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAAT
* * *
13675144 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAGAGTGTCCCCATTTCAAAC
382 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
13675209 ACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-
447 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
13675273 TCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCAT
512 TGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * ** *
13675338 GTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCTAAT----TTTGTCAATCAGGTTCTT
576 GTGCGCACA-CCCCCCGG-CCCCCCGATC-GCGGAACCCCAATGCCGTCGGTCAATCAGGTTCTC
* *
13675399 CGGTGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCA
638 CGGTGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** *
13675464 GCATGTCCTGCTGTAACCCTCAGTCTGGTCCAATCTCAAACTGGGAATGAACTCCTTATGCTTAG
703 GCATGTCCTGCTGTAACCCTCAGTCCAGTCCAATCTCAAACTGGGAATGAACTCCGTATGCTTAG
* * ** *
13675529 ACTAGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCC
768 ACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCC
* * * * ** *
13675594 ATAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGGCCCCCTCTACGTGCTTTCAATCTTGCTG
833 AAAGGGGCGGGATTCGCAAGCTGGGGATCGG-CGGGTCCCCCTCTGCGTGCTACCAATCCTGCTG
13675659 CCA
897 CCA
* * * * *
13675662 CAACCCTCAGCCCGGTCCT-ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGA
13675726 AACGAGCAGGCG--GGCGGGCGGGCACTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGAT
65 AACGAGC-GGCGCAGGCGGGCGGGCACTAC-TCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGAT
* **
13675789 CGATAGGGTGGTTA-GTTGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
128 CGATAGGGTGG-TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
13675853 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ***
13675918 TTCTATTTTTCATGATTTTTTAAACTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
257 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
* * * * *
13675983 GTTTTGACCCCAAAGTTAGATG-C-GATCCTTGTATTTTTGTTGGCATGCACAAAAACATTAAGC
322 GTTTTGTCCCCAAACTTAGAAGACTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
13676046 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
13676111 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
* * * *
13676176 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCATCCATCGCACATCATCTGCGC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* * * *
13676241 ATACCGCCCCAGCCCCCCCAATCGTCGAAACCCCAATGCCG
582 ACACC-CCCC-GGCCCCCCGATCG-CGGAACCCCAATGCCG
13676282 CCAGTCATTG
Statistics
Matches: 2127, Mismatches: 221, Indels: 133
0.86 0.09 0.05
Matches are distributed among these distances:
865 1 0.00
866 85 0.04
867 422 0.20
868 2 0.00
874 27 0.01
875 31 0.01
876 3 0.00
877 60 0.03
879 1 0.00
880 6 0.00
883 3 0.00
884 1 0.00
888 1 0.00
890 2 0.00
893 2 0.00
896 4 0.00
897 238 0.11
898 2 0.00
899 5 0.00
900 165 0.08
901 82 0.04
902 7 0.00
903 105 0.05
904 261 0.12
905 95 0.04
906 2 0.00
907 5 0.00
910 2 0.00
911 89 0.04
912 335 0.16
913 54 0.03
914 8 0.00
915 20 0.01
916 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (899 bp):
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGCGCAGGCGGGCGGGCACTACTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTT
TGTCCCCAAACTTAGAAGACTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
CCCCCGGCCCCCCGATCGCGGAACCCCAATGCCGTCGGTCAATCAGGTTCTCCGGTGATGCTCCG
ACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTCCTGCTG
TAACCCTCAGTCCAGTCCAATCTCAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAGGGGCGGGAT
TCGCAAGCTGGGGATCGGCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCA
Found at i:13677220 original size:26 final size:26
Alignment explanation
Indices: 13677191--13677242 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13677181 TCCGATCTTG
* *
13677191 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAAAGAACTCCGTATCCTTA
13677217 GACTGGGAAAGAACTCCGTATCCTTA
1 GACTGGGAAAGAACTCCGTATCCTTA
13677243 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
GACTGGGAAAGAACTCCGTATCCTTA
Found at i:13678730 original size:909 final size:898
Alignment explanation
Indices: 13676443--13678980 Score: 3537
Period size: 904 Copynumber: 2.8 Consensus size: 898
13676433 GCCAAGCATG
* * * * * * * * * *
13676443 TGCTACTGCAACCATCGGTCCGATCTAATCCTAGACTAGGAATGCACTCCGTATGCCTAAGCTAA
1 TGCTCCTGCAACCCTCGATCTGATCCAATCTTAGACTAAGAATGAACTCCATATGCCTAAGCCAA
* * * * *
13676508 TCGACGAAACGAGC----GGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGATGGGATACGCAA
66 CCGACCAAACGAGCGGGGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
13676569 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
13676634 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
13676699 GACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGATTCAAGATTTTTTAAAATTTTTT
261 GACTCGTTTTTTATTTTTCACGATTTT-GAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTT
* * * *
13676764 CGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCATAAAA
325 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATT-GCATGCA-CAAA
** *
13676829 AAATTCAGCTAAAAACTCGTGGTGAACAAA-ATTTTGTGACCATTTGAAAAAAGTATCCCCATT-
388 AAATTCAGCTAAAAACTCGAAGTGAA-AAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
* * *
13676892 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
452 T-AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13676957 AGTTCTCGAGGTTTGATGAGGGATAGGGGACCAACATAAGGGCCAAGTACCAGCACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13677022 ATCATGTGCGCACAACCCCCCGGCCTCCCCGATCGTAGGAACCCCAACGCCGTCGGTTAGGTTCT
580 ATCATGTGCGCACAACCCCCC-GCCT-CCCGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCT
* * * *
13677087 CTAGCGATGCTCCGGTGACGGTGCCCCGATGAAGAAAAATCCGGCACCAGCACATGCCCAACCCC
643 CTGGCGATGCTCCGGTGACGGTGCCCCGATGAAGAAAAATCAGGCACCAGCACATGCCCGAGCCC
* * * ** * * * *
13677152 AACATGTGCTACCGCAACTGTCGGTCCGATCCGATCTTGGACTGGGAATGAACTCCGTATGCTTA
708 AGCATGTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAAGCTTA
13677217 GACTGGGAAAGAACTCCGTATCCTTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACTGGC
773 GACTGGGAAAGAACTCCGTATCCTTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACTGGC
* *
13677282 CAGAAGGGCGGGATGCGTAAGCAGAGGATCGATCGAGTCTCCCTCTGCGTGCTTCTGATCC
838 CAGAAGGGCAGGATGCGTAAGCAGAGGATCGATCGAGTCTCCCTCTACGTGCTTCTGATCC
** **
13677343 TGCTCCTGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTCCTGCAACCCTCGATCTGATCCAATCTTAGACTAAGAATGAACTCCATATGCCTAAGCCAA
* *
13677408 CCGACCAAACGAGCGGGTGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACCAAACGAGCGGGGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * **
13677473 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATGTTTTTATGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * * *
13677538 TTTTTATGGCTTGCAAATTCATACAATTGCCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *** * *
13677603 GACTCGTTTTTTATTTTTCACAATATTTGAAACTTTTTAAAGTTCGAGATTTTTTAAAAATTTTT
261 GACTCGTTTTTTATTTTTCACGAT-TTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTT
* *
13677668 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTCGCAGGTACAAAA
325 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATT-GCATGCAC-AAA
* **
13677733 AAATTCAGCTAAAAACTCAAAGTTTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGAAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTC
*
13677798 ATAG--ACTTTAATGGCTGCTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
452 -TAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
13677861 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
13677926 ATCATGTGCGCACAACCCCCCCAGCCTCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
580 ATCATGTGCGCACAA-CCCCCC-GCCTCCC-GATCGTCGGAACCCCAATGCCGCCGGTAAGGTTC
* * * * *
13677991 TCCGGAGATGCTCCGGTGACGGTGCCCCGACGAAGAAAAATCTGGCACCAGCACATGCTCGAGCC
642 TCTGGCGATGCTCCGGTGACGGTGCCCCGATGAAGAAAAATCAGGCACCAGCACATGCCCGAGCC
* * *
13678056 CAGCATGTGCTGTCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATAAGCTT
707 CAGCATGTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAAGCTT
* * * *
13678121 AGACTGGGAATGAACTCCGTATGCC-TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC-AGTC
772 AGACTGGGAAAGAACTCCGTAT-CCTTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACT-
* *
13678184 GGCCAGAAGGGCAGGATGCGTAAGCCGAGGATCGATCGAGTC-CTCTTCTACGTGCTTCTGATCC
835 GGCCAGAAGGGCAGGATGCGTAAGCAGAGGATCGATCGAGTCTC-CCTCTACGTGCTTCTGATCC
** * * * *
13678248 TGCTGTTGCAACCCTTGGTCTGATCCAATCTTAGACTAAGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTCCTGCAACCCTCGATCTGATCCAATCTTAGACTAAGAATGAACTCCATATGCCTAAGCCAA
* * * * *
13678313 CTGACCAAACGAGCGGGCGGGCAGACGGGCGGGCGGGCACTACGCCAGTCAAAGAGACGGGATGC
66 CCGACCAAACGAGCGGG-GGG--G-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
13678378 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
127 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
* * * * *
13678443 GACATTTCTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTTACATGAAGTTTCATGGCA
192 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
13678508 AGATGACTCCTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATT
257 AGACGACTCGTTTTTTATTTTTCACGATTTT-GAAACTTTTTGCGGTTCAAGATTTTTTAAAATT
** * *
13678573 TTTTCGAAAGGA-TTTGTGGTGCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGACATGCA
321 TTTTCGAAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTG-CATGCA
*
13678637 GCAAAAAATTCTGCTAAAAACTCGAAGTGAAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
384 -CAAAAAATTCAGCTAAAAACTCGAAGTGAAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
13678702 ATTCTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGT
448 ATTCTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** * *
13678767 GTGAGTTCTCGACATTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAATACCAGCACCCATTG
513 GTGAGTTCTCGAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
13678832 CACATCATGTGCGCAC-A----CC-CCTCCCGATCGTCGGAACCTCAATGTCGCCAGTAAGGTTC
577 CACATCATGTGCGCACAACCCCCCGCCTCCCGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTC
* * * * *
13678891 TCTGGCGATGCTCCAGCGATGGTGCCTCGATGAAGAAAAATGAGGCACCAGCACATGCCCGAGCC
642 TCTGGCGATGCTCCGGTGACGGTGCCCCGATGAAGAAAAATCAGGCACCAGCACATGCCCGAGCC
*
13678956 CAGCATGTGCTGCCAGAACCCTCGA
707 CAGCATGTGCTGCCACAACCCTCGA
13678981 AATGAGCGTA
Statistics
Matches: 1454, Mismatches: 157, Indels: 54
0.87 0.09 0.03
Matches are distributed among these distances:
900 175 0.12
901 6 0.00
903 5 0.00
904 458 0.31
905 342 0.24
906 6 0.00
907 4 0.00
908 16 0.01
909 441 0.30
910 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
TGCTCCTGCAACCCTCGATCTGATCCAATCTTAGACTAAGAATGAACTCCATATGCCTAAGCCAA
CCGACCAAACGAGCGGGGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTTTATTTTTCACGATTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTC
GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGCATGCACAAAAAA
TTCAGCTAAAAACTCGAAGTGAAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGA
CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACAACCCCCCGCCTCCCGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCTGGCGAT
GCTCCGGTGACGGTGCCCCGATGAAGAAAAATCAGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAAGCTTAGACTGGGA
AAGAACTCCGTATCCTTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACTGGCCAGAAGGG
CAGGATGCGTAAGCAGAGGATCGATCGAGTCTCCCTCTACGTGCTTCTGATCC
Found at i:13679520 original size:26 final size:26
Alignment explanation
Indices: 13679491--13679541 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13679481 GGTCCAATCG
*
13679491 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
13679517 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
13679542 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:13680424 original size:26 final size:26
Alignment explanation
Indices: 13680395--13680446 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13680385 CCGGTCTGAT
* *
13680395 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13680421 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13680447 ACAAAGTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:13681204 original size:897 final size:900
Alignment explanation
Indices: 13679103--13682235 Score: 4194
Period size: 901 Copynumber: 3.5 Consensus size: 900
13679093 GGATCTTAGA
* *
13679103 CCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* * *
13679168 GACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGAAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
13679233 TCGCAAAGGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
13679298 GGGCCAAGTACCAGCACCCATCGCACATCATGCGCACACACCCCCTCGGCCCCCTCGATCGTCGG
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC-CGGCCCCCCCGATCGTCGG
* * * * * **
13679363 AACCCCAATGTCGTCGGTCAGGCTCTCCGATGATGCTCC-AGTGATAGTGCCCTGACGAAGAAAA
260 AACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGA-CGATGGTGCCCCGGTGAAGAAAA
* * * * ** *
13679427 ATGCAGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCAATCGT
324 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCCGGTCTGATCTT
* *
13679492 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACA
389 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACG
* * * * *
13679557 AAACGAGCGTGCGGTCA-TTCAGCCGACCAGAGGGGTGGGATGCACAAGCCGGGGATCAATCGGG
453 AAACGAGCGTGCGG-GAGCTCAGCCGGCCAGAGGGGCGAGATGCACAAG-CGGGGATCAATCGGG
* * * * *
13679621 TCCCTCTCTACGTGCTACCGATCTTGCT-ACGACAACCCTCGGTCTG-GTCTAATCTTACACTGG
516 TCCCCCTCTACGTGCTGCCGATCCTGCTGACG-CAACCCTTGGTCTGATTC-AATCTTACACTGG
* ** * *
13679684 GAATGAACT-TCGTATGCCTAAGCCAACCTACCAAACGAGCGGGCGGGCGGACAGGCGGGCGGGC
579 GAATGAACTCT-GTATGCCTAAGCCAACCGATGAAACGAGCGGGC--GAGG-CAGGCGGGC--AC
13679748 -ACGATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
638 TACG-T-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
13679812 GCA-CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTCC
701 GCATCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
13679876 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAA
766 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * *
13679941 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTGTGAT-GCCAAACTTGGTAGA
831 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-TCCCCAAACTTGGTAGA
13680005 CGA-GAT
895 C-ATGAT
* * *
13680011 CCTTGTATTTTTGTTGGCATGCACCAAAAAATTCAGCTAAAAACTCAAAGTGAAAAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* *
13680076 GACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATTGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
** * *
13680141 TCTCAAATGCTCTTTAACTGGGTGTGAGTTTTGGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * **
13680206 GGGCCTAGTACCAGCACCCATCGGACATCGTGTGCGCACACCCCCCCGG-ATCCCCGATCGTCGG
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGGCCCCCCCGATCGTCGG
* *
13680270 AACCCCAATGCCGTCGGTTAGGTTCTCCGATGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAA
260 AACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAA
**
13680335 TGCGGCACCAGCACACACCCGAGCCCA-CATGTGCTGCCGCAACCCTCGGCCCGGTCTGATCTTA
325 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCCGGTCTGATCTTA
* * * * *
13680399 GACTGGGAATGAACTCTGTATGCTTAAACTGGGAATGAACTCCGTATGACAAAGTCGAGCCACGA
390 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCACGA
* * * * * * *
13680464 AACGAGCGTGCGGGAGCTCAACTGGCCAGAAGGGG-GCGATGCGCATGTCGAGGATCAACCGGGT
454 AACGAGCGTGCGGGAGCTCAGCCGGCCAG-AGGGGCGAGATGCACAAG-CGGGGATCAATCGGGT
* * * *
13680528 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGATTCAATTTTATACTGGGAA
517 CCCCCTCTACGTGCTGCCGATCCTGCTGACGCAACCCTTGGTCTGATTCAATCTTACACTGGGAA
* *
13680593 TGAGCTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-AGGCAGGCGGGCACTACGT-CGA
582 TGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGGCAGGCGGGCACTACGTCCGG
*
13680656 CCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCATC-TCTTC
647 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATCATCTTC
** *
13680720 ATATTTCTGTGTGCGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
712 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* **
13680785 ACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
777 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGT
* *
13680850 TC-AGGATTTTTTAAAATTTTTTTGGAATGAGTTTTGTCCCCAAACTTGGTAGACATGAT
842 TCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACTTGGTAGACATGAT
* *
13680909 CCTTGTATTTTT-ATGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* * *
13680973 GACCATTTGAAAATAGTGTCCCAATTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
13681038 TCTCAAATGCTCTTTAATGCGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
13681103 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGACGGA
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGA
* * * * * *
13681168 ACCCCAATGCCGTCGATTAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGGTGAAGAAAAAT
261 ACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAAT
* * * * * *
13681233 GTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGGTC-GATCTTAG
326 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCCGGTCTGATCTTAG
* * *
13681297 ACTGGGAATGAGCTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTGCGAA
391 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC-ACGAA
* * * * **
13681362 ATGAGCGTGCGAGCGGTCAGCCGGCCAGAGGGGCGAGATGCACAAGCTGGGGATCGGTCGGGTCC
455 ACGAGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGC-GGGGATCAATCGGGTCC
* * * * * ** * *
13681427 CCCTCTACTTGCTGCCGATCCTGCTGTCACAACCCTTGATC-CATTTTGATCTTAGACTAGGAAT
519 CCCTCTACGTGCTGCCGATCCTGCTGACGCAACCCTTGGTCTGA-TTCAATCTTACACTGGGAAT
* * * *
13681491 GAACTCCGTATGCCTAAGCCAACTGATGAAAAGAGCGGGCGGGAGGGC-GTGCGGGCATTAC-TC
583 GAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGC--GA-GGCAG-GCGGGCACTACGTC
* * * *
13681554 CGGCCAAAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG-TTCATC
644 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATCATC
* * *
13681618 TTCATATTTCTACATTCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCC
709 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
13681683 TTCCCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAG
774 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
* **
13681748 GGTTCGAGATTTTTTAAAATTTTTTCGGAGGGAGTTTTAG-CCCCAAACTTGGTAGATGTGAT
839 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GTCCCCAAACTTGGTAGACATGAT
* *
13681810 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* * * *
13681875 GACCATTTG-AAAAAGTCTCCCTATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
13681939 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTCGATGAGGGATAGGGGGGCC-ATATA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGGCCAATATA
* * * * * * *
13682003 AGGGCCAAATACCAGCACCCATCGCACAACATGGGCGCACACCCCCCGGCCCCCCCAACCGCCGG
195 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGG
** * ** *
13682068 AACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCTCGGTGAAGAAAAA
260 AACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAA
* * * * * ** *
13682133 TACGGTAACAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTC-GCTTTGGTTTGATCTT
325 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGC-CCGGTCTGATCTT
*
13682197 AGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGA
389 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
13682236 TTTCCTTATG
Statistics
Matches: 1958, Mismatches: 235, Indels: 70
0.87 0.10 0.03
Matches are distributed among these distances:
896 18 0.01
897 490 0.25
898 270 0.14
899 1 0.00
900 8 0.00
901 511 0.26
902 117 0.06
903 2 0.00
905 1 0.00
906 218 0.11
907 100 0.05
908 217 0.11
909 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGA
ACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCACGAAA
CGAGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCGGGGATCAATCGGGTCCCC
CTCTACGTGCTGCCGATCCTGCTGACGCAACCCTTGGTCTGATTCAATCTTACACTGGGAATGAA
CTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGGCAGGCGGGCACTACGTCCGGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATCATCTTCATAT
TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGA
GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACTTGGTAGACATGAT
Found at i:13681328 original size:26 final size:26
Alignment explanation
Indices: 13681292--13681344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13681282 TCTGGTCGAT
* *
13681292 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13681318 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13681344 C
1 C
13681345 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13682827 original size:12 final size:12
Alignment explanation
Indices: 13682810--13682840 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
13682800 TCCCTTAAGC
13682810 CTTCACGTGAAG
1 CTTCACGTGAAG
13682822 CTTCACGTGAAG
1 CTTCACGTGAAG
13682834 CTTCACG
1 CTTCACG
13682841 GCAAGATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (12 bp):
CTTCACGTGAAG
Found at i:13683387 original size:26 final size:26
Alignment explanation
Indices: 13683336--13683388 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13683326 CCGGTCCGAT
* * *
13683336 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTACATATG
*
13683362 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACATATG
13683388 C
1 C
13683389 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACATATG
Found at i:13683722 original size:159 final size:158
Alignment explanation
Indices: 13683362--13683735 Score: 534
Period size: 158 Copynumber: 2.4 Consensus size: 158
13683352 ACTCCATATG
* * *
13683362 CTTAGACTAGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGCGCTCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAAC
* * *
13683427 CGGCCAGAGGGGTGGGATACGCAAGCCGGGGATCGGTTGGTCCCCCTCTGCGTACTACCGATCTT
66 CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTGGGTCCCCCTCTGCGTACTACCGATCCT
**
13683492 GCTGTCGCAACCCTTGATTTGGTCTAAT
131 GCTACCGCAACCCTTGATTTGGTCTAAT
* * *
13683520 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAAC
* * *
13683585 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGG-TGGGTCCCCCTCTGCGTACTACCGATCC
* *
13683650 TGCTACCGCAA-CCTTCGGTTTGGTCTGAT
130 TGCTACCGCAACCCTT-GATTTGGTCTAAT
* * ** *
13683679 CTTAGACTAGGAATGAACTCCGTATACCTAAGGCAACTGACGAAACGAGCGGGAGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGG
13683736 TGGGCGGGCA
Statistics
Matches: 191, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
158 96 0.50
159 95 0.50
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAAC
CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTGGGTCCCCCTCTGCGTACTACCGATCCT
GCTACCGCAACCCTTGATTTGGTCTAAT
Found at i:13684429 original size:26 final size:26
Alignment explanation
Indices: 13684390--13684442 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13684380 CCAGTCCAAT
13684390 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13684416 CTTAGACT-GTGAATGAACTCTGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
13684442 C
1 C
13684443 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13686927 original size:26 final size:26
Alignment explanation
Indices: 13686891--13686943 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13686881 CTGGTTTGAT
13686891 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13686917 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13686943 C
1 C
13686944 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13687085 original size:897 final size:898
Alignment explanation
Indices: 13685128--13687814 Score: 3684
Period size: 897 Copynumber: 3.0 Consensus size: 898
13685118 GGTCCGATCA
* * *
13685128 TAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
* * * ** * * *
13685193 GCCAGAGGGGCAGGATGCGTAAGTCGGGGATCAACCGGGTCACCCTCTGCGTGCTGCCAATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCTATCCTG
* * *** ** * **
13685258 CTGCTGCAGCCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACT-TCGTTTGCCTAAGCTTAC
131 CTGCTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAAC
* * * * *
13685322 CGATGAAATGA----ACGGGCAGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
195 CGACGAAACGAGCGGATGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* * * **
13685383 GGATCGATAGGGTGGTATGTGGGTTTAGGTACATCTTCATATTTCTACGCGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
13685448 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
13685513 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGAAA
390 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* * *
13685578 GGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAACATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
13685643 CAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGAGA
520 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
13685708 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTT-TGTGTTAT
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTTGTGAGTTAT
* *
13685772 TGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
649 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * * * * * * *
13685837 TGCGCACA-CCCCTTGGCCCATCGATCGTCGGAATCCC-AATACCGCCAGTCAGATTCTTC-AGC
714 TGCGCACACCCCCCAGCCCCCTCGATCGCCGGAA-CCCTAATGCCGCCGGTCAGGTTCTCCGA-C
* ** * *
13685899 AATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCTT
777 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCAGAGCCCAGCAT
* * * *
13685964 GTGCTGCCACAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCCGTACGCT
842 GTGCTGCCGCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCC-TATGCT
** * * *
13686022 TAGACTGGGAATGAACTTTGTATGCCTATGTCAACCCACGAAACGAGCGTCCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
*
13686087 GCCAGAGGGGCGGGATGCACAAGCCGGGGATC-GATCGGGTCCCCCTCTACGTGCTG-CTGATCC
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAG-TCGGGTCCCCCTCTACGTGCTGCCT-ATCC
* * * * *
13686150 TACTACTGCAACCCTCAAT-TCGGTTTGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCCA
129 TGCTGCTGCAACCCTCGATCT-GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * * * **
13686214 ACTGACGAAACGAGTGGATGGGCGGGCGGGTACTACGCCGGCCAGAGAGATGGGATGCGCAAGCC
193 ACCGACGAAACGAGCGGATGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC
*
13686279 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
13686344 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
13686409 TCGTTTTCTATTTTTCATGATTTTCAAAACATTTTACGGCTCGGGATTTTTTAAAATTTTTTTGA
388 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* **
13686474 AAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATTTTTGTATTTTTGTTGGCATGCAC-AAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
13686538 TTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
518 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
13686603 CATTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTA
* **
13686668 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGTCAAGTACCAGCACCCATCGCACATGTT
648 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
13686732 GTGTGCACACCCCCCAGCCCCCCCGATCGCCAGAACCCTAATGCCGTCGGTCAGGTTCTCCGACG
713 GTGCGCACACCCCCCAGCCCCCTCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACG
* * *
13686797 ATGCTCCGACGATGGTGCCTCGACAAAGAAAACTGC-GACACCAGCACATGCCAGAGCCCAGCAT
778 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCAGAGCCCAGCAT
* * * **
13686861 GTGCTGTCGCAGCCCTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCT
842 GTGCTGCCGCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCC-TATGCT
* *
13686919 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
13686984 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCTATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCTATCCTG
* ** **
13687049 TTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
131 CTGCTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
* * * * * *
13687114 GGCGAAACTAGCGGTCTCGCTGGC-GGACGGGCACTACACTGGCCAGAGAGACAGGATGTGCAAG
196 GACGAAACGAGCGG-AT-G--GGCAGG-CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
* * * * * ** *
13687178 CTGTGGATCGATAGGGTGGTAGGTAGCTTTAGGCACACCTTCATATTTTTGTGTGCCAATACCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
13687243 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
13687308 AATCGTTTTCTTTTTTTCACGA-TTTCTGAAACTTTTTACGATTTGGGATTTTTTCAAATTTTTT
386 ACTCGTTTTCTATTTTTCACGATTTTC-AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
13687372 CGAAAGGATTTTTTGCCCCAAAACTTGGTAGACGTGATACTTTTATTTTTGTTGGCATGCACAAA
450 CGAAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
13687437 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13687502 CAGACACTTTAACGGCTACT-GCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 CAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTG
* *
13687566 AGTTATTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCAATCGCAC
643 AGTTATTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
13687631 ATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGCTGGAACCCTAATGCCACCGGTCAGGTTCT
708 ATCATGTGCGCACA-CCCCCCAGCCCCCTCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCT
* *
13687696 CCGATGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCA-AGCC
772 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATG-CCAGAGCC
* * * * * *
13687760 TAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGCTCTTAGACTGGGAATAAACT
836 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACT
13687815 TCGTATGCCT
Statistics
Matches: 1575, Mismatches: 189, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
893 1 0.00
894 165 0.10
895 1 0.00
896 44 0.03
897 472 0.30
898 286 0.18
899 1 0.00
900 6 0.00
901 218 0.14
902 41 0.03
903 161 0.10
904 33 0.02
905 142 0.09
906 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCTATCCTG
CTGCTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
GACGAAACGAGCGGATGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTATTG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCAGCCCCCTCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCAGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCTATGCT
Found at i:13689417 original size:26 final size:28
Alignment explanation
Indices: 13689388--13689442 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
13689378 CCGGTTCGAT
13689388 CTTAGACT-GGGAATG-AACTCCGTATG
1 CTTAGACTGGGGAATGAAACTCCGTATG
13689414 CTTAGACTGGGGAATGAAACTCCGTATG
1 CTTAGACTGGGGAATGAAACTCCGTATG
13689442 C
1 C
13689443 CCTAAGTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 8 0.30
27 7 0.26
28 12 0.44
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (28 bp):
CTTAGACTGGGGAATGAAACTCCGTATG
Found at i:13691214 original size:26 final size:26
Alignment explanation
Indices: 13691163--13691215 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13691153 TTGGTCCGAT
* **
13691163 CTTAGACTGGGCATAAACTCTTTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
13691189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13691215 C
1 C
13691216 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13693620 original size:718 final size:719
Alignment explanation
Indices: 13692260--13693735 Score: 2268
Period size: 718 Copynumber: 2.1 Consensus size: 719
13692250 ACAACCCTTA
* *
13692260 GTCTGATCCAATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
1 GTCTGATCCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG
* * * *
13692324 GCGGGAGGGCGGGCAGGCACTACGTCGGCGAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
65 GCAGGAGGGCGGGCAGGCACTACGTCGGCGAGAGAGACGGGATGCGCAAGCCATAGATCGATAAG
* *
13692389 GTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATTCTTATCGCTAGTAA
130 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTCTTATCGCTAGTAA
*
13692454 ATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCATTTTCTATTT
195 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
** * *
13692519 TTCACAATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTCTTGGC
260 TTCACAATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTCTTTCGAAAGGAGTCTTAGC
**
13692584 CCCAAACTTGGAAGACATGATCCTTCTATTTTTGCTGGTGTGCACAAAAAAATTCAGCTAAATAC
325 CCCAAACTTGGAAGACATGATCCTTCTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAATAC
*
13692649 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATAGTCCCCATTACAGACACTTTAATGGCT
390 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATAGTCCCAATTACAGACACTTTAATGGCT
* *
13692714 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATG
455 ACTAGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
13692779 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCACACACCCG
520 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCG
*
13692844 CCCAACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCAACGA
585 CCCAACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCAACGA
*
13692909 TGGTGCCCTAACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-
650 TGATGCCCTAACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAT
13692973 CTCTCG
715 CT-TCG
*
13692979 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTCAA-CCAATCGACGAAACGAGCAG
1 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGCAG
* * * *
13693043 GCAGGCGGGCGGGCGGGCACTACG-CTGGCTAGAGAGACGGGATGTGCAAGCCATAGATCGA-AA
65 GCAGGAGGGCGGGCAGGCACTACGTC-GGCGAGAGAGACGGGATGCGCAAGCCATAGATCGATAA
* * *
13693106 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTTTATGGCTTGTA
129 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTCTTATCGCTAGTA
*
13693171 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
194 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
* * * * *
13693236 TTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTCTTTCGAAAGGAGTTTTAG
259 TTTCACAATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTCTTTCGAAAGGAGTCTTAG
* * **
13693301 CCCCAAACTTGGTAGACGA-GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA-
324 CCCCAAACTTGGAAGAC-ATGATCCTTCTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAT
* *
13693364 ATCTCGAAGTGTACAAGATTTTGTGACCATTTTGAAAAAAGT-GTCCCAATTTCAGGCACTTTAA
388 A-CTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAA-TAGTCCCAATTACAGACACTTTAA
* * * *
13693428 TGGCTATTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGTTGTGGGTTCTCGAGGTT
450 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
13693493 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCAC
515 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACAC
** * *
13693558 ACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
580 ACCCGCCCAACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCC
*** * * * *
13693622 GGTGATGATGGCCTGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
645 AACGATGATGCCCTAACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
13693687 GCAATCTTCG
710 GCAATCTTCG
* * *
13693697 GTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGC
1 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
13693736 TTTGACTGGG
Statistics
Matches: 688, Mismatches: 61, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
717 1 0.00
718 418 0.61
719 265 0.39
720 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (719 bp):
GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG
CAGGAGGGCGGGCAGGCACTACGTCGGCGAGAGAGACGGGATGCGCAAGCCATAGATCGATAAGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTCTTATCGCTAGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
TCACAATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTCTTTCGAAAGGAGTCTTAGCC
CCAAACTTGGAAGACATGATCCTTCTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAATACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATAGTCCCAATTACAGACACTTTAATGGCTA
CTAGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCGC
CCAACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCAACGAT
GATGCCCTAACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATC
TTCG
Found at i:13694629 original size:26 final size:26
Alignment explanation
Indices: 13694600--13694652 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13694590 CCGGTCTGAT
*
13694600 CTTAGACT-GCGAATGAACTCTGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
13694626 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13694652 C
1 C
13694653 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13694686 original size:891 final size:891
Alignment explanation
Indices: 13693050--13723367 Score: 19955
Period size: 891 Copynumber: 33.8 Consensus size: 891
13693040 CAGGCAGGCG
* * * * * *
13693050 GGCGGGCGGGCACTACGCTGGCTAGAGAGACGGGATGTGCAAGCCATAGATCGA-AAGGTGGTAG
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
13693114 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
13693179 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
13693244 TTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTCTTTC-GAAAGGAGTTTTAGCCCCAAA
196 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAA
* *
13693308 CTTGGTAGACGA-GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAATCTCGAA
260 CTTGGTAGAC-ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * *
13693372 GTGTACAAGATTTTGTGACCATTTTGAAAAAAGTGTCCCAATTTCAGGCACTTTAATGGCTATTA
324 GTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
13693437 GCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGTTGTGGGTTCTCGAGGTTTGATGAGGG
388 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
13693502 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACACCCCCCGG
453 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* *
13693567 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGATG
518 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * * * * *
13693632 GCCTGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATCTTCG
583 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCG
* * * * *
13693697 GTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTTGACTGGGAATGAACTCCGTATGC
648 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* ** * * *
13693762 CTAAGTGAACCCACGAAATAAGCGTGGGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGTAAGCC
713 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * * * **
13693827 AGAGATTGGTCGGGTCCCTCTCTACGTGCTGCCGAACTTGCAGCCCAACCCTCGGTCCGGTTCAA
778 GGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCCAACCCTCAATCCGGTTCAA
* * *
13693892 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAATCGACGAAACGA
843 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * **
13693941 -GCGGGCGGGCACTACTCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCCG
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
13694005 GTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
13694070 CAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * * *
13694135 TTTTCAAAACTTTTTACGGTTCGGGATATTTCAAAATTTTTTCACAAGGTGTTTTGGCCCCAAAC
196 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * * *
13694200 TTGGTAGACATGATCCTTCTATTTTTATTGGCATGCACAAAAAAATTCAGCAAAAAAATCGAAGT
261 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* **
13694265 GTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTAAAGACACTTTAATGGCTACTGGCA
326 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
13694330 GCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
391 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
13694395 GAGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCTCCTCGGC
456 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CC-CGGC
* * *
13694460 CCCCCCGATCAG-AGGAACCCCATTGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTG
519 CCCCCCGATC-GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * ** *
13694524 CCCTGACGAAGAAGAATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCTACCCTCG
583 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCG
* * * *
13694588 ATCCGGTCTGATCTTAGACTGCGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGC
648 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
13694653 CTAAGTCAACCCATGAAACGAGCTTACGGGCGCTCAGTCGACCAGAGGGGCAGGATGCACAAGCT
713 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * *
13694718 GGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTATCGCAACCCTCAATCCGGTCCA
778 GGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCCCAACCCTCAATCCGGTTCA
* *
13694783 ATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCGACGAAACGAGTGGA
842 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-----GA
*
13694838 GGGGCGGGCGAGCGAGCGCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
1 --GGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* **
13694903 TGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGAGATTTTTATGGCTTGTAAA
60 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
13694968 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTT
125 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
*
13695033 TCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
190 TCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
*
13695098 CCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAAC
255 CCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
13695162 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCTGACACTTTAATGGCT
319 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
13695227 ACTGTCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
384 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
13695292 AGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACTTCATGTGCGCACACCCT
449 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-
* ****
13695357 CCCCGGCCCCCCCGATCAG-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTAAT
512 CCCCGGCCCCCCCGATC-GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGC
** * *
13695421 GATGGTGCCCCGGTGAAGAAAAATGCAGCACCGGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
576 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
* * * * * * *
13695486 AACCTTGATCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTT
641 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ***
13695551 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGTATGGGATGC
706 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * ** * **
13695616 GCAAGTCAGGGAACGGCAAGGTCCCCCTCTACATG-TGACCGATCCTGCTGCCGCAACCCTCGGT
771 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTG-CCGATCCTGCTGCC-CAACCCTCAAT
* * * *
13695680 CTGATCCAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
834 CCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
13695738 GCTGGCGGGCGGGCGGGCACAACGTCGGCCAGAGAGACAGGATGCGCAAGCTGTGGATCGATAGG
1 -------GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
13695803 GTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
59 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
13695868 ATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGATTCTTGGCAAGACGACTCATTTTTTATTT
124 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
13695933 TTCATGATTTTTGAAACTTTTTGCGATTAGGGATTTTGTAAAATTTTTTCAGAAGGAGTTTTGGC
189 TTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
** * *
13695998 CCCAAACTTATTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAAC
254 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* **
13696063 TCGAAGTGTACAAGATTTTGTGACCATTTGTAAAAAGTGTCTGCATTTCAGACACTTTAATGGCT
319 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
13696128 ACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
384 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
13696193 AGGGATAGGGGGCCAATATAAGGGCCAAGTACAACCACCCATCGCACATCAGGTGCGCACACCCC
449 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** * * * *
13696258 CCGGCCCCCCTAATCGTCGAAACCTCAATGCCGTTGGTGAGG-T-T----C--T-CT--GGCGAT
514 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
** * *
13696312 GGTGCCTTGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGCAACC
579 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
* * *
13696377 CTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
644 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
13696442 ATGCCTAAGTTAA-CCACGAAATGAGCGTGCGGTCGCTCAGCCGGCCAGAGTGGCGAGATGCGCA
709 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* *** * * * ** * ** *
13696506 AGCCGGGGATCGACCGGGTCTGACTCTCCATGCTGGCGATATTGCTGCTACAACCCTCGGTCCAG
774 AGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGC-CCAACCCTCAATCCGG
** * ** *
13696571 TTGGATGTTAGACTACGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGA
838 TTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C-GA
* * * *
13696630 CGGGCGGACGGGCGGTCACTACGCCAGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAAGG
1 -----GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
13696695 TGGTAGGTGGGTCTAGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
60 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
13696760 TTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTT
125 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
13696825 TCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
190 TCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
*
13696890 CCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAAC
255 CCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
13696954 TCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCT
319 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
13697019 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGATG
384 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
13697084 AGGGATAGGGAGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCAAGTGCGCACA-CCC
449 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** * *
13697148 CCGGCCCCCCTAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT---TCGA---T-----GAT
514 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
* * *
13697202 GGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATATGCTGTCGCAACC
579 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
* * * * **
13697267 CTC-AGTCTGGTCCGATCTGAGATTGGGAATAAACTCTATATGCTTAGACTGGGAATGAACTCCG
644 CTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * ** * *
13697331 TATGCCTAAGTTAACCCACGAAACGAGCGTCCGGGTGCTGAATCGGCCA-ACGGGGCGAGATGTG
708 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCGGGATGCG
* * *** * * * *
13697395 TAAGCCGGGGATCGACCGGGTCTGACTCT-CTGTGCTGCCAATCTTGCTGCCATAACCCTCATTC
772 CAAGCCGGGGATCGGCCGGGTCCCCCTCTAC-GTGCTGCCGATCCTGCTGCC-CAACCCTCAATC
** * ** * * *
13697459 CGGTTGGATGTTAGACTATGAATGACCTCCGTATGCCTAAGCCAACTGATGAAACGA
835 CGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
13697516 GCGGACGGGCGGACGGGCGGTCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
1 --GG-C--G-GG-C--G-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * **
13697581 TAAGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATGCCAATGATATTTTTATGGCTT
55 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
13697646 ATAAATTCATACAATGGTACCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
120 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
13697711 ATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTT
185 ATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
*** * * *
13697776 TGGTATCGAACGTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
250 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
13697841 AAACTCAAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
315 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
13697906 GGCTACCGGCAGCAAACCTATAAAATCTCAAATGCTATTTAAGGTGGTGTGAGTTCTCGAGGTTT
380 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
13697971 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
445 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
13698036 CCCCTCCCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATG
510 ------CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
* * * * * * * *
13698101 CTCCGGTGATGGTGCCTCAATGAAGAAAAAGGTGGCACCAGCAAATGCCCGAGCCCAGCATATGC
569 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** *
13698166 TACCGTAACCCTCGGTCCGATCCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAA
634 TGTCGCAA----C---CC--T-CGATC-----C--G----G---TCCG-AT-CTTAGACTGGGAA
* * *
13698231 TGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTTAGTCAACCCACGAAACGAGCGT
673 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * **
13698296 GCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGTGTCCTCCACTGT
738 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTAC
* * * * * * *
13698361 GTGCTACCGATCCTACTACCGTAACCCTCGATCCGG-TCTGATCTTAGACTGGGAATGAACTCTG
803 GTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGGTTC-AATCTTAGACTGGGAATGAACTCCG
*
13698425 TATGCCTAAGCCAATCGACGAAATGAGTGGGCGGA
866 TATGCCTAAGCCAACCGACG-AA--A-----C-GA
* * * * * *
13698460 CGGGCGAGCGGGCACTACGCCGACTAGAGAGACGGGATACGCAAGCCATGGATCAATAGGGTGGT
1 --GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
13698525 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTATAAATTCA
64 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
13698590 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCAT
129 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * ** * ** *
13698655 GACTTTT-GAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGCGTTTCAGCCGCA
194 GA-TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * * * * * *
13698719 AACTTGGTAGACGTGATCCTTGTATTTTTTTTCGTATGCACAAAAAAATTTAGCTAAAAACTTGT
258 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13698784 GGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG
323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
13698849 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGG
388 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
13698914 ATAGAGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCGG
453 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
** * * * * *
13698979 -CCCCCTAATCGCCGTAACCCCAATGCCATCTGTCAGGTTCTCCTGCGATGCTCCGGCGATGGTG
518 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * * *
13699043 CCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGTCGCAACCCTCG
583 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCG
* * * *
13699108 AGCCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCTGTATGC
648 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * * * **
13699173 CTATGCCAACCCACAAAACAAGCGTGCGGGCGCTTAGTCAGCTAGAGGGGCGGGATGCGTAATTC
713 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * ** *
13699238 GGGGATCGACCATGTCCCCCTCT-CTGTGCTTCCTATCCTGCTGCCACAATTCTCAATCCGATTC
778 GGGGATCGGCCGGGTCCCCCTCTAC-GTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGGTTC
* * *
13699302 GATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACGAGTGGGCA
841 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC------G-A
13699360 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGATGGATCGATAGGGT
1 ----GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATAGGGT
* * * *
13699424 GGTAGGTGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGACATTTTTATGGTTTGTAAAC
61 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
13699489 TC-TCACAATGG-CCCTTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGATTCGTTTTCTATTT
126 TCAT-ACAATGGTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*
13699552 TTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATATTTTT-GGAAGGAGTTTTGG
189 TTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT-TTTTTCAGAAGGAGTTTTGG
* * *
13699616 CCCCAAACTTTGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAA
253 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
**
13699681 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTACCCCCATTTCAGACACTTTAATGGC
318 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
13699746 TACTGGCAGCAAACTTGTAAAATTTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTGAGGTTTGAT
383 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
13699811 GAGGGATAGGGGGCCAATATAAGGGCTAGGTACC-GACACCCATCGCACATCATGTGCGCACACC
448 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACACC
* * * * *
13699875 CCCCGG-CCCCCCAATCATCGGATCCCCAATGTCATCGGTCAGG---T-------T-CTCCGGCG
512 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCG
** * * * *
13699928 ATGGTGCCCCGGTGAAGAAAAACGCGGCACTAGCACATGCCCAAGCCCAGCATGTGCTGTCACAA
577 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
* * *
13699993 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
642 CCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** * * * * *
13700058 GTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCACTCAGCCGGCCAGAGCGACGAGATGCG
707 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** ** * * * * * *
13700123 CAAGCTGGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCAATCCTACTACCGTAACCCTCAGTCT
772 CAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATCC
* * * * *
13700188 GG-TCTAATCTTACACAGGGAATGAACTCCGTATGCCTAAGCGAACTGACGAAATGAGCAGGCG
836 GGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-A
* *
13700251 GGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
13700316 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGGCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
13700381 CAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGATGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * ** * * * *
13700446 TTTTTGAACCTTTTTATGATTTGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAAC
196 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
** * * * *
13700511 TTGGTAGATGTGATCCATGTACTTTTT-TTGGCATGCACAAAAAAATTCATCTAAAAACTCAAAC
261 TTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * * *
13700575 TGTACAAGATTTTGTGACCATTTGCAAAAACTATCACCATTTTAGACACTTTAATGGCTACTGGC
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
13700640 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATAAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
13700705 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-C
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * ** * * *
13700769 CCCCCTATCGTCGGAACCTCAATACCACCGATCAGGTTCT-C--CG--G-T-----AATGGAGCC
520 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * ** * * *
13700823 TCGACGAAGAAAAATACGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGTAACCCTCGGT
585 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGAT
* * * * *
13700888 CGGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGGCTGGGAATGAACTTCGTATGCCT
650 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
13700953 AAGTCAACACACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCTG
715 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * *
13701018 GGATC-GCTTGGGTCCCCCTCTGCATGCTGCCGATCCTACTGTCGCAACCCTCAGTTCGG-CCTA
780 GGATCGGC-CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG-CCCAACCCTCAATCCGGTTC-A
* * *
13701081 AACTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGA
842 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-----C-GA
* *
13701140 CGGGCGGGCGGGCACTACGCCGGCCAGAGACACGGGATGCGCATGCCGTGGATCGATAGGGTGGT
1 --GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* ** **
13701205 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGTAATTTTTATCCCTTGTAAATTCA
64 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
13701270 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGAC
129 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT--C
** ** *
13701335 AAAATTTT-GAAACTTTTTAAGGTTCGGGATTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCC
192 ATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* * * *
13701399 AAACTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
257 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
13701464 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
322 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
13701529 GGTAGCAAACTTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
387 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
13701594 GATAAGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCG
452 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * * * *
13701659 G-CCCCACGATCGTCGGAACCCCATTGCCG-CTGGTTAGGTTCTCCGACGATGCTTCGACAATGG
517 GCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* * * *
13701722 TGCCCCGACGAAGAAAAATGCCGCACCAACACATGTCCGA-CCCTAGCATGTGCTGCCGCAACCC
581 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGTCGCAACCC
13701786 TC-A---------ATC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTA
645 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
13701825 TGCCAAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGAAA
710 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * ** ** *
13701890 GTCGGGGATCAGTCGGGTCCCCCTCTGCATGCTGCCGATCCTATTGTTGCAACCCTCCATCCGG-
775 GCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG-CCCAACCCTCAATCCGGT
* * *
13701954 TCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGA
839 TC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-----C-GA
* * * * *
13702017 CGGACGGGTGGGCACTACGCCGGCCAGAGACACGGGACGCGCACGTCGTGGATCGATAGGGTGGT
1 -GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
13702082 AGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
64 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
13702147 TACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
129 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
13702212 GATTTTCAAAACTTTTTACGGTTAGGGATTTTTTAAAATTTTTTC-GAAAGGTGTTTTGGCCCCA
194 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCA
* * * *
13702276 AACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCATAAAAAATTTCAGCTAAAAACTC-A
258 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13702340 ATTTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACT
323 A-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
13702405 GGCAGCAAACCTGTTAAATCTGAAATGCTTTTTAAGGCGGTGTTAGTTCTCGAGGTTTGATGAGG
387 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
13702470 GATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACA-----C-
452 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * *
13702529 -CCCCCCCGATCGAT-GGAACGCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
517 GCCCCCCCGATCG-TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* * * * * *
13702592 TTCCCCGTCGAAGAAAAATGCTGCAACAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
581 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
*
13702657 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
646 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
13702722 GCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAG
711 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *** ** *
13702787 CCGAGGATCGGCCGGGTCCTCCTCTGCATGCTGCTGATCCTGCTATTGCAACCCTCGGTTCGG-T
776 CCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCCCAACCCTCAATCCGGTT
*
13702851 CTAATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
840 C-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
13702904 GCAGACGAGCGGGCACTATGCCAGCCAGAGAGAC-GGATGCGTAAGCCGTGGATCGATAGGGTGG
1 G--G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
13702968 TAGGTGGGTTTAGGCACATCTACATATTTCTACATGCCAATGTCATTTTTATGGCTTGTAAATTC
63 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
13703033 AAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCA
128 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
13703098 TGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTAAAAAAATTTTCCA-AAGGAGTTTTGGCCCC
193 TGATTTTCGAAACTTTTTGCGGTTCGGGATTTTT-TAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* *
13703162 AAACTAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
257 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
13703227 AAGTGTACAAGATTTCGTGGCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
322 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
13703292 GGCAGCAAACCTGTAAAATCTCAAATGCTATTTAA-GGTGTGTGAGTTCTCGAGGTTTGATGAGG
387 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
13703356 GATAGGGGGCCAATATAAGGTCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCC
452 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCC
* * ** * * *
13703421 CGGCCCCCCTGATCATCGGAACCCCAATGCCACCAGTTAGGTTCTCCGGCGATGCTCCGACGATG
515 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
* * * *
13703486 GTGCCCCGACGAAGTAAAATGCGGCACCAGCACATGCCTGATCCCAGCATGTGCTGTCACAACCC
580 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
* * * * *
13703551 TC-AGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGT
645 TCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * **
13703615 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGAGGGATTCATA
709 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
** * * * * ** *
13703680 AGTTGGGGACCGGCTGGGTCCCCCTCTACGTGCTACCAATCCTAATGCCGTAACCCTCAATCCGG
774 AGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGG
* * *
13703745 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAA
838 TTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A
* * * *
13703800 TTGGCGGGCGGGCGGCATGGCATTACGCCGGCCAGAGAAATGGGACGTGCAAGCCGTGGATCGAT
1 --GGCGGGC--G-GGCA---C--TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
13703865 AGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCATGCCAATGACATTTTTATGGCATG
56 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * *
13703930 TAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCCTTTTCTA
121 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * ** * * *
13703995 TTTTTCATGATTTTGGAAACTTTTTG-AGTTCAAGATTTTTTTAAATTTTTTGA-AAGGATTTTT
186 TTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
* *
13704058 GGCCCCATACTTGGTAGACATGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
251 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * * * *
13704123 AACTCTATGTGTACAAGATTTCGTGGCCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATG
316 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
13704188 GCTACTGGTAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTT
381 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG-GTTT
*
13704253 GATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
445 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
13704318 CCCCCTGGCCCCCCCGATAG-CTGGAACCCTAATGTCAC-T-GGTCAGGTTCT-C--CGA-----
510 CCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATG-C-CGTCGGTCAGGTTCTCCGGCGATGCTC
* * * * * *
13704372 ---CGATGGTGCCCCAACAAAGAAAAATACGGCATCAGCACATGCCCGAGCCCAGCATGTGTTAT
572 CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT
* * * * * *
13704434 CGTAACCCTTGATCTGGTCCGATCTTAGACTGGTAATAAACTCCATATGCTTAGACTGGGAATGA
637 CGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
13704499 ACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGGGGGCGCTCAACCGGCCAGAGGGGCGGG
702 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* ** * * * ** *
13704564 ATGTGCAAGCCGGGGATCGGCCAAGTCCCCCTTTACGTGCTACTGATCCTGCTGTGGCAACTCTC
767 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG-CCCAACCCTC
* * * *
13704629 AATCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATTAGTG
831 AATCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--CG-A
* * * * ** **
13704693 GGCGGGCAGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATTTATAATGTGGTAG
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
13704758 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
13704823 CAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AGCACAACTGGTTTTCTATTTTTCACG
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-ACGACTCGTTTTCTATTTTTCATG
*
13704887 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-AGGAAGGAGTTTTGGCCCCAA
195 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCA-GAAGGAGTTTTGGCCCCAA
* * * *
13704951 ACTTGGTAGGCGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGAA
259 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
13705016 GTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTTCCCATTTCAGACACTTTAATGGCTACTGG
324 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
13705081 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
389 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
13705146 TAGAGGGCCAATATAAGGGCCAAGTACCAGTACCCAACGCACATCATGTGCGCACACCCCCCAGC
454 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * ** *
13705211 CCCCTCGATCG-CTGGAACCCCAATGTCACCGGTCAGG--CT----C--T--T-CGACGATGGTG
519 CCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * ** * *
13705264 CCCCGACGGAGAAAAATACGAAACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCT-T
583 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCG
* * * ** * * **
13705328 AGCCTGGTCTGATCTTACACTACGAATGAACTCCGCATGCGTA-A----G--CCAA--CCG-A--
648 ATCC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * ** ** * * * * *
13705381 -CGAA-ACGA-GCGGGCAGGCG-GTCGGGCGGGCACT-ACGCCGGCCAGAGAGACGGCATGCGCA
712 CCTAAGTCAACCCACG-AAACGAG-CGTGCGGGCGCTCA-GCCGGCCAGAGGGGCGGGATGCGCA
* *** ***** * * ** ** ** *
13705441 AGCCGTGGATCGATAGGGTTTAGGTGGGTTTAGGAACGT-CTTCATATTTTTGCCTGCTGATGCC
774 AGCCGGGGATCGGCCGGG--T--CCCCCTCT----ACGTGCTGCCGA-TCCTG-CTGCCCA-ACC
* *** ** * * * *** * * ** * *
13705505 ATTTTTATGGTTTGCACAATCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAA--
828 CTCAATCCGG-TT---CAATCTTAGACTGG-GAATGAA--C-TC-CGT-ATGCCT-AAGCCAACC
* ** *
13705568 AACGACTCGTT
882 GACGAAACG-A
********** * ** * * * * * **** **** *** *
13705579 TTTTATTTTTCA-TGATTGTTGAAACTTTCTGTG-GTTCGAGATTTTTTAAAATTTTTTTGGA-A
1 GGCGGGCGGGCACT-A-CGCCG--GC---CAGAGAG-ACGGGA-TGCGCAAGCCGTGGATCGATA
** * * ** * ** * * * **** **
13705641 GGAGTTTTTGCCCTGAACTTGGTAGACGTTATCTTTGTATTTTTGTTGGCATG-CAAAAAAAAAT
57 GG-GTGGTAG--GTG-GGTT--TAGGC-ACATC-TT-CATATTT-CT-GCATGCCAATGCCATTT
* ** * * * ** * **
13705705 TCA--GC-TAAAAACTCGAAGTGTACAA-GAT--TTTGTGACCATT--TGAAAAAGGTGTTCCCA
111 TTATGGCTTGTAAATTC--A---TACAATGGTCCCTTAAG-CC-TTCACG-TGAA-GT-TT--CA
** **** *** * *
13705762 TTTC-AGAC-ACT--TTTATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTATTTAAG-G
164 TGGCAAGACGACTCGTTT-T--CTA-T-TTTTC--A--TG-ATTTTC-GAAA--CT-TTT-TGCG
* * * * ** ** ** * ** ** *
13705822 GGT-GTGAGTTCTCGAGGTTTGAT--G-AGG-GATAGGGGGCCAATA-TAAGGTCCAAGTACCA-
214 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA-ACT-TGGT---AG-A-CAT
* * * * ** ********* ** * ** ****
13705880 GCACCCATCGCACATCATG-TGCGCA--CACCCCCCCGGCCCCCCTGATCA-TCGAA-ACCCCAA
272 G-ATCC-TTGTA-TTTTTGTTG-GCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
***** * ** ** *** * * * **
13705940 TGCCGCCAGTTA-GGTTCTCCAGCGA-TGCTCCGACGATTGTGCCCCGACGAAGTAAAATGTGAC
332 -G-ATTTTGTGACCATT-TGAAAAAAGTG-TCC--CCATT-T---CAGAC--ACTTTAATG-G-C
** ** * * * **** * *
13706003 -ACCAGCA-CATGCCTG----ATCCCAGCATG-TGCTGTCACAACCCTCAGTCTGAG---TCGAT
383 TACTGGCAGCAAACCTGTAAAATCTCA-AATGCT-CT-T--TAA--GGGGGTGTGAGTTCTCGAG
* * * **** * ** * * * **
13706058 CTTAGACTG-GGAAT-GAACTCC-GTAT----GCTTAG-ACTAGGA---AT-GAAC-TC-TGTAT
441 GTTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** * * * * * *
13706109 GC-CTA------AGTCAACCC-A---T--GAA--ACGA-G-CGTGCGGGC--GCTCAACCGGCCA
505 GCAC-ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGT-CGGTCAGGTTC-TCCGGCGA
* * * * ** * **** * * *
13706155 -G---AGGGGAGGGATTCACAAGCCCG-AGACCGGTTG-GGTC-CC-CCTC-TG--CGTGCTGCC
567 TGCTCCGGCGATGG-TGC-CCCG-ACGAAGA-AAAATGCGG-CACCAGCACATGCCCGAGC--CC
* * * * * *
13706209 A--ATCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
625 AGCAT-GTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * **** ** ** *
13706272 A-A----G-CT-AACT--G-A---CGAA-ACGAATGGGCG-GGC-AGGCG-GTAAGGCACT-ACG
689 AGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGA-GCGTG-CGGGCGCTCA-G
* **** * * *** ****** ** *
13706319 TCGGCCAGAGAAATGGGATGTGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGT-TTAGGCAC-
750 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCT--GC-CG
** *** ** ** ** * * * *
13706381 AT-CT--TG-ATATTTCTGC-ATGCCAATGAAAT-TTTTA-T-GGCATGTAAATTCATACAATGG
812 ATCCTGCTGCCCAACCCT-CAAT-CCGGTTCAATCTTAGACTGGGAATG-AACTCCGT---AT-G
** * *
13706438 TCCCTTAAGCCTTCACG-TGAAGTTTC-A
870 --CC-TAAGCCAAC-CGACGAA---ACGA
** * * * * ****** * **** * ** ***
13706465 TGGAAAGACGGCTCATTTTCTATTTTTCATGATTTTGGAAACTTTTTGAGTTCAAG-ATTTTTTA
1 -GG-CGGGCGG-GCA-CTAC-GCCGGCCA-GA-----GAGACGGGATGCG--CAAGCCGTGGAT-
** **** * * * * ** ** *
13706529 AAATTTTTTCGGAAGGAT---TTTTGGCCCCAAACTTGGTA-GACATG-AT-CC--T-CGTATTT
52 CGATAGGGT-GGTAGG-TGGGTTTAGG-CAC-ATCTTCATATTTC-TGCATGCCAATGC-CATTT
* * * * * * ** * *
13706585 TTGTTGGCATGCACAA---A-AAAAT--TCAACTAAAAAC-TCGATGTGTACAAGATTTCGTGGC
111 TT-ATGGCTTGTA-AATTCATACAATGGTC-CCTTAAGCCTTC-ACGTG---AAG-TTTCATGGC
** * * ** * * **
13706643 AATTTGAAAAAAGT-GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
168 AA---G--ACGACTCGT-----TTTC-TA-TTTTTCAT-G--ATTTTC-G-AAA-CT-T----T-
** * * * * * * ** **
13706707 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGA--TTTTGATG-AGG-GATAGGGGGCCAATA
209 T----TGC-GGTT--CGGGAT-T---TT-TTAAAATTTTTTCA-GAAGGAGTTTTGGCCCCAA-A
* * * * **** **** * * *
13706768 -TAATGGCCAAGTACCA-GCACCCATCGCACACCATG-T-GC--GCAC---CCCCTCCGGC---C
260 CT--TGG--TAG-A-CATG-ATCC-TTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
** * * * * * * ** ** ** ***
13706821 CCCCCGATAGCTGGAACCCTA-ATGTCGCCGGTCAGGTTCTCCGATGATGGTG-CCCCGA-CAAA
316 AACTCGA-AG-T-GTA--CAAGATTTTG-TGACCA--TT-T--GAAAAAAGTGTCCCC-ATTTCA
*** ** ** * *** * ** * ** *** *
13706883 GA-AAAAT-ATGGC-ACCAGCA-CATGCCCG--AGCCCAGCATGTGCTGTCGCAACCCTCGGTCT
369 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCT-TTAA--GGGGGTGT
* * * ** * ** *
13706942 G-GTCCGATCTTAGACTGGTAATGAACTCTGTATGCTTAGACTGGG--AATGAACTCTGTATGCC
430 GAGT----TC-TCGA--GGT-TTG-A---TG-AGGGATAG--GGGGCCAAT--A-TAAG--GGCC
* * * ** *** ** **
13707004 TAAGT--CA--ACCCA---CAAAACAAGCGTGCGGGCACTTAGCCGGCCAAAGGGGCGGGAT-GT
475 -AAGTACCAGCACCCATCGCACATC-A-TGTGCGCACAC-CCCCCGGCC-----CCCCCGATCGT
* *** *** * * * * *
13707061 -GCAAGCCGGGGATCGGCCG--GGTCCCCTTTTACGTGCTGCCGATCCTGCTACGGCAACT-CTC
531 CGGAA-CC-CCAAT--GCCGTCGGT--CAGGTT-C-T-CCGGCGA---TGCTCCGGCGA-TGGT-
* ** * * ** * * * ** * * ** * *
13707122 AGTCTGGTCCAATTTTAGACTG-GGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAG-T
582 -GCCCCGACGAA--GAAAAATGCGGCACCAGC-AC--ATGCCCGAG-C--CC-A-G-CATGTGCT
* * *** * *** * *
13707185 G-GGCAGGCGGGCAATACGCCGG-CC-A-GGGAGAC-GGG-ATGCGCAA-GCCGTGGAT-TTATA
635 GTCGCA-ACCCTCGAT---CCGGTCCGATCTTAGACTGGGAAT--G-AACTCCGT--ATGCT-TA
* * * * * ** * * * **** * **
13707242 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG-GTTTG
690 -----G-A-CTGGG--AATG-A-A-CTCCGTATGCCT--AAGTCAA-CCCA-CGAAACGAGCGTG
****** ** ** * * *** * * * ** * * ** ***
13707306 TAAATTCATACA-ATGGTCCCTTA-AGCCTTCACGTG-AAGTTTCATGG--CAAGACGACTCGTT
739 CGGGCGC-T-CAGCCGG--CCAGAGGGGCGGGATGCGCAAG--CCGGGGATC-GGCCGGGTCCCC
* ** * * ** *** * * * *
13707366 TTCTA--TTTTTCACGAT--T--T--TCAAAACTTTTTGCGGTTCATGATTTTTTAAAATTTTTT
797 CTCTACGTGCTGC-CGATCCTGCTGCCCAACCCTCAATCCGGTTCA--A--TCTT-AGA----CT
* * ** ** ** * * * * * ***
13707423 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC-TCG-TATTT
852 GGGAATGA--ACT--CCGTATGCCT--AAGCCA--A-CCGACGAAACGA
* * * * ******* * * * * * *** * **
13707470 TGCTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGA-CCAT-TTG
1 GGCGGGCGGGCACTACGCCGGCCAG--AGAGAC-GGGA-TGCGCAAG-CCGTG-GATCGATAGGG
**** *** * * ** * *
13707533 AAAAATGTGTCCCCATTTCAGACAC-T-TTAATGGCTACTAGCA-GCAAACCTGTAAAATCTCAA
60 TGGTA-G-GT--GGGTTT-AGGCACATCTTCAT-ATTTCT-GCATGCCAA--TG------C-C--
* ** ** * * **** * *** * * * * *
13707595 ATGCTCTTTAAGGGGGTGCGAGTTC-T-CGA-GGTTTGATGAGGGAT-AGGGGGCCAA-TATAAG
107 AT--T-TTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-CGTG--AAGTTTCAT
* * ** * * * * * ***** ** **
13707655 GGCCAAGTACCAGCAC----TC-ATCGTACATCATGTGCGCACAC-CCCCCCGGCCCCCCTGATC
165 GG-CAAG-ACGA-CTCGTTTTCTATTTTTCATGATTTTCG-AAACTTTTTGCGG--TTCGGGAT-
* *** **** * * * ** ** ** * *
13707714 GTCGGAACCCCAATGCCATC-GATCAGG-CTTCCGGCGATGGTGCCCAGGCGAAGAAAAATCAGG
223 TTTTTAA----AATTTTTTCAGA--AGGAGTT------TTGG-CCCCAAAC-TTGGTAGA-CATG
* * **** * * * ** ** * * ** **
13707777 AACC---AACACATGCTCG-A-GC-CCAGCATGTGCTGTCGT-AACCCTCGGCCCG-GCCTGATC
273 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-C-TAAAAACTC-G-AAGTG--T-A-C
* * ** * * *** * ** * **
13707834 TTAGACTGGGATTGAAC-TTCGCATGCCTAAGCT-ACCCGACGAAATGAGCGGACGGACGGTCGG
330 -AAGATTTTG--TGACCATTTG-A--AAAAAG-TGTCCC--C---AT-TTCAGAC--AC--T-TT
*** * ** * * *
13707897 GCGGGCACTACGTCGGCCAG-AGAGACGGGATGTGCAAGC-CATGGATCGATAGCGTTGT-AGGT
377 AATGG--CTAC-T-GG-CAGCA-A-AC---CTGTAAAATCTCA--AAT-GCT--C-TT-TAAGG-
* ** * ** * ** * ***
13707959 GGGTTTAGGCACATCTTCATATTTTTGCTTGCCGATGCCATTTTTATGGCTTGTAAAATCATACA
424 GGGTGT--G-AGTTC-TC-GAGGTTTG-AT---GA-GGGA----TA-GG--GGGCCAAT-AT--A
* ** * ** * * ** *******
13708024 ATGGTCC-TTTA--AGC-CTTCACAT-GAAGTTTAATG-GCAAG-ATGACTCGTTTTCTATTTTT
469 A-GGGCCAAGTACCAGCAC--C-CATCGCA-CATCATGTGC--GCA-CAC-C---CCCCGGCCCC
** * ** * **** * * * ****** ** * **
13708082 CATGAT-TTTTGAAACTTTTTGCGGTTTGG---GATT-TTTTAAAATTTTTTCGAAAG-GAGTTT
522 CCCGATCGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCGGCGA-TGCTCCG---GCGA-TGG
* ** * * * **** ** * * * *
13708141 TGGCCCCGAACTTGGTAGAAGTGATCCTTGTA-TTTTAGTTGGCAG-GCACAAAACAAT-TCAGC
581 T-GCCCCG-AC---GAAGAA-AAATGC-GGCACCAGCACATGCCCGAGC-C-CAGC-ATGT--GC
** ** * * * * ** * *
13708203 TGAT-G--A---GGGATAAGGGGCCAAT-ATA-A-TGGCCAA-GTACCAC-CACCCAT-CGTACA
634 TG-TCGCAACCCTCGAT-CCGGTCCGATCTTAGACTGG-GAATG-A--ACTC-CGTATGCTTAGA
* * * **** * * * * *
13708256 TCAT--GTACGCACACCCCCCGGCCCCCTGATCGTCGGAACCC-C-AATGCCG-CCAGT-CAGGT
692 -C-TGGGAATG-A-A--CTCCGTATGCCT-A-AGTC--AACCCACGAA--ACGAGC-GTGCGGGC
* * ** * ** **** **
13708315 TCTCCGGTGATGCTTCGACGATGGTGCCCCGA--CG-AAG--AAAAATACGGCACCTGTACATGC
744 GCTCAGCCG--GC--C-A-GA-GG-GGCGGGATGCGCAAGCCGGGGAT-CGGC-CGGGT-C---C
* * * * * * ** * * * *
13708375 CCGAACCCAACATGTGTTGTTGCAACCCTCGATCTGATTCGA-TCTTAGA-CTAGGAATGAACTC
795 CC---CTCTAC--GTGCTG--CCGATCCT-G--CTG-CCCAACCCTCA-ATC-CGG--T----T-
* * * * * *
13708438 CGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGA
840 C-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
** * * * * * * * * * * ** **
13708492 -GCGTACGGGCGCT-CAACCAGCCAGAGGGGCAGGATTCGTAAGTCGGGGATC-AGCCGGGTCCC
1 GGCGGGCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGT-GG
**** * *** * * * * ** * *
13708554 CCTCTGTGTGCCGCCA-ATC--C-TGTTGCCGCAACCCTCGAT-CCAGTCTGATCTTA-GACTTG
63 TAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGC-CAATGCCA-T-T--T-TTATGGCTTG
* ** * * ** ** ** * * * **
13708613 -GAATGAACTCCGTAT-G--CC-TAAGCCAACCGACGAAACGAGTGGGC-GGGC-GGGC-AGGCG
121 TAAATTCA-TAC-AATGGTCCCTTAAGCC-TTC-ACGTGA--AGT-TTCATGGCAAGACGACTCG
**** ** **** ** * * * ** * *** **
13708670 AGCACTA--CGTCA-G-CCAGCGAAACGGGATGTGCAAG-CCGTGGA---TAGATAGGGTGGT-A
179 TTTTCTATTTTTCATGATTTTCGAAAC--TTTTTGC-GGTTCG-GGATTTTTTAAAATTTTTTCA
** * * * ** ** ** * * * *
13708726 GGTGG-GTTTAGG-CAC-ATCTTCTTATTTC-TGCATGCGAATGCCATTTTT-ATGGCTTGTA-A
240 GAAGGAGTTTTGGCCCCAAACTTGGTA-GACATG-AT-C-CTTG-TATTTTTGTTGGCATGCACA
* * * ** * * *
13708785 ATTCATACAATTGTC-CCTTAAGCCTTCACGTGAAGTTTCACGGAAAGATGACTCGTTTTCTATT
300 A---A-A-AAAT-TCAGCTAAAAAC-T--C--GAAGTGT-AC---AAGAT---T--TTGT-GA--
** *** * * * * **
13708849 TTTCACGATTTTGGAAACTTTTTGAGT-TCAGGATTTTTTA-AAATTTTTTCGGAA-GGAGTTTT
342 ---C-C-A-TTT-GAAA-----AAAGTGTCCCCA--TTTCAGACA--CTTT---AATGG-CTACT
** * * * ** * ** ** ** *** ** **
13708911 GGCCCCAAACTTGGTAGACATGATC-CTTG-TATTTTTGTTGGCATGCA---CAAAAACATTCAA
387 GGCAGCAAACCT-GTA-AAAT-CTCAAATGCTCTTTAAGGGGGTGTG-AGTTC-TCGAGGTTTGA
* ** * * * ** * ** **
13708971 CTAAAAGCTCGAAGTGTACAAGATTTTGTGGCCATTTCAG-AAAAGTGTC-CCCATTTCAGACAC
447 -TGAGGGAT--AGGGGGCCAATA-TAAG-GGCCA----AGTACCA--G-CACCCA--TC-G-CAC
* * * * ** *** ****** * * * ** *** * **
13709034 TTTAATG-GC-TACTAGCAGCAAACCTGTAAAATC-TC-AAATGCTCTTTAAAG-GGGTTTGAGT
496 -ATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGGAA-CCCCAATGCCGTCGGTCAG-GT
* * ** * * * * * * *
13709094 TCT-C-GAGATTTAGATAAGG-GACAGG-G----GGCCAA-TATAA-G-GGC-CAAGTACCA-GC
557 TCTCCGGCGA--T-GCTCCGGCGA-TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA-CATGC
* ** * * * * *** *
13709146 ACCCATCGTACATCATGTGC-G-CACACCCCCCGA-CCCCCCCGATC---G-C--CG-A--AAC-
617 -CCGA--GCCCAGCATGTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT
* * * ** ** * * * * ***
13709198 CC-TAATAC--CG-CCGGTCATGTTCTTCG-ACG-AT-GGTGC--CCCGACG-AA-GAAAAATGC
679 CCGT-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT-CAACCC-ACGAAACG-AGCGTGC
* * * * *** * ** * ** *** * **
13709252 -GACAC-CAG-C-ACC-----TGC-CTTTGC-CTAGCATGTG--CTACCGCAACCCTCGGT-C-T
740 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGT
* * * ** ** * * *
13709302 GGT-CCAATCTTAGACTG-GTAA-TGT-ACTCC--AT--ATGCTTAGA-TAGGGAATGAACTTCG
805 GCTGCCGATCCT-G-CTGCCCAACCCTCAATCCGGTTCAAT-CTTAGACT-GGGAATGAACTCCG
* *
13709358 TATGCCTAAGTCAACCCACGAAAC-A
866 TATGCCTAAGCCAACCGACGAAACGA
** ** * * *
13709383 AACGTACAGGCGCT-CAGCCGGCCAGATG-GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
1 GGCGGGCGGGCACTAC-GCCGGCCAGA-GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* ***
13709446 AGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
64 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
13709511 TACAGTGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAT
129 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * ** * * *
13709576 GATTTTCAAAACTTTTTACGGTTCAAGATTTTTTTAAATGTTTTT-GGAAGGATTTTTGGCCCCA
194 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT-TTTTTCAGAAGGAGTTTTGGCCCCA
* ** * * * *
13709640 AACATGGTAGATGTGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAAATTGA
258 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
13709705 AGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTG
323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
13709770 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
388 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
13709835 ATAGGGGGCTAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCC
453 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CC
* * * *
13709900 GACCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGG
516 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* * ** * * * *
13709965 TGCCCC-AGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGTAGGATATGCTGCCACAACCC
581 TGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
* * * * * *
13710029 TTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAA-TATCGT
645 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CCGT
* * **
13710093 ATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCATA
709 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * ** *
13710158 AGCCGGGGATCGGTCAGGTCCCCCTCTACGTGGTGCTGATCCTGCTACCGCAACCCTCGGTCCGA
774 AGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGG
* * * *
13710223 TCCGATCTTAGACTGGGAATGAACTTCGTATGCCCAAGCCAACCGACGAAGTAAGCG-
838 TTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A--AA-CGA
* * * * * *
13710280 GGCTGGTGGGCACCACGCCGGCCAGAGAGACGAGATGCGCAAGCTGTGAATCGATAGGGTGGTAG
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
13710345 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
13710410 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * * * * * *
13710475 TTTTTGAAGCTTTTTACGATTTGGGATTTTTTTAAATTTTTTCGGTAGAAGTTTTGGCCCCAAAC
196 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * * * *
13710540 ATGGTAGACGTGATCCTTTTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
261 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
13710605 GTACAAGATTTTGTGACCGTTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
326 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * **
13710670 GCAAACCTATAAAATCTAAAATGCTCTTTATGGGGATGTGAGTTCTCGAGGTTTGATGATAGATA
391 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13710735 GGGGGCCAAAATAAGGGCCAAGTACTAGC-CCGCATCGCACATCATGTGCGCACA---------C
456 GGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * * * * ** *
13710790 CCCCCGATGGCCGGAACCCCAATGCCGTTGGTCTGATTCTCTGACGATGCTCCGATGATAGTGCC
520 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* *
13710855 CCGACGAATAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTC-A-
585 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGAT
* *
13710918 -------G-TC-----C---G---G---TCC-AAT-CTTAGACAGGGAATGAACTCCGTATGCCT
650 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
13710959 AAGTCAACCCA-GAAAATGAGGGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCG
715 AAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * ** *** **
13711023 GGGATCGGTCGGGTCCCCCTTTGCATGCTGTCGATCCTGCTATCGTAACCCTCAATCTAATTTGA
779 GGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCCCAACCCTCAATCCGGTTCAA
* * *
13711088 TCTTAGACGGGGAATGAACTCCGTATGACTAAGCCAACCGGCGAAACGA
843 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
13711137 -GCGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGTCGTGGATCAATAGGGTGGTAG
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
13711201 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATATTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
13711266 CCATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGACGACTTAG-TTTCTATTTTTCATG
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-TCGTTTTCTATTTTTCATG
* * * *
13711330 ATTTTTGAAACTTTTTGCGGTTC-AGATTTTTTTAAATTTTTTGAGAAGGAGTTTTGGCCCCAAA
195 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* *
13711394 CTTGGTAGACGTGATCCTTGTTATTTTT-TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
260 CTTGGTAGACATGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
13711458 GTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGG
324 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
13711523 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
389 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
13711588 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
454 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * *
13711653 CCACTCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCT-C--CGA--------CGATGCTGC
519 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * * * * * *
13711707 CTCGGCGAAGAAAAATGCGGCACCAGTACATGTCTGAGCCTAGCATGTGCTGCCGCAACCCTTGG
584 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGA
** * * * *
13711772 TCCTATCTGATTTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCC
649 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
** * ** *
13711837 TAAGTCAACCCACGAAATTAACGTGCGGGCGCTCAGCTAGCCAGAGGGGCGGGATGCGCAAGCCA
714 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * *** * *
13711902 GGGATCGGTCGAGTCCCCCTCTACGTGCTACCGATCCTGCTACTGCAACCCTTGGTCCGATCCAA
779 GGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGC-CCAACCCTCAATCCGGTTCAA
* ** *
13711967 TCTTAGACTAGGAATGAACTATGTATGCCTAAGCCAACTGACGAAACGAGCA
843 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A
* *
13712019 GGCGGACGGGCGGGCACTACGCCGGCCAGGGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTG
1 ---GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * **
13712084 GTAGGTGGGTTTAGGCACATCTTCGTATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
62 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
13712149 CATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTC
127 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *** *
13712214 ACGATTTTTGAAACTTTTTGCAGTTCAATATTTGTTAAAATTTTTTC-GAAAGGAGTTTTGGCCC
192 ATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCC
* * *
13712278 CAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAATAACTC
256 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
**
13712343 GGGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
321 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
13712408 TAGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
386 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * ** *
13712473 GGATAGGGGGCCAATATAAGGGCCAAGTACTAGTATTCATCGCACATCATGTGCCCACATCCTCC
451 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CC
* * * * * *
13712538 CCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCG-CTGGTTAAGTTCTTCGACCATGCTCCGGC
512 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGGC
* * * * *
13712602 GACGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAGCACAGCATGTGCTGCCGCA
576 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
13712667 A-CC-C--T-C-G---G-TC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTC
641 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** * * **
13712706 CGTATGCCTAAGTCAAATCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGTGGGTAGGGATGC
706 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** * ** *
13712771 GCAAGCTGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCTGATCCTGCTGCCGCAACCCTTGATT
771 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATC
* *
13712836 CGGTTCGATCTTAGACTGGGAATGAACTCTC-TATGCCTAAGCCAACTGACGAAACGAGCGGGCA
835 CGGTTCAATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACG-AA--A-C--G-A
* *
13712900 GGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
1 GGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
13712965 GTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTGATGGCTTGTAAATT
62 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
13713030 CATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTC
127 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
13713095 ACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCC
192 ATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
** *
13713160 AAACTTGGTAGATGTGATCCTTGTATATTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC
257 AAACTTGGTAGACATGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
13713225 TAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTCAGACACTTTAATGGCTAC
321 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
13713290 TGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGCTCTCAAGGTTTGATGAG
386 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
13713355 GGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATTGCACATCATGTGCGCATACCCCCC
451 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* ** * * * * * *
13713420 GGCCCCCCCAATCACCGAAATCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
516 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* * *
13713485 TACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCT
581 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * * * * * *
13713550 CGGTCCGGTCTGATCTTAGACTAGGAATCAACTCCATATGCTTAGGCTGGGAATGAACTCTGTAA
646 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * **
13713615 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAACTAGCCAGAGGGGCGGGATGCGCAAG
711 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * **
13713680 CGGGGGATCAGTCGAGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCTGTCCGG-T
776 CCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGGTT
*
13713744 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
840 C-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
** * *
13713797 GCGGGCGGGCGGGGGGAGGGCACTACGTTGACCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
1 ---GGCGGGC-------GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* **
13713862 AAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
56 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
13713927 TAAAATT-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
121 T-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * * *
13713991 ATTTTTCATGATTTTTGAAACTTTTTGGGGTTTGGGATTTTTTTAAATGTTTTCGGAAGGAGTTT
185 ATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
* * *
13714056 TGGCCCCAAACTTGGTAGACATGATTCTTGAATTTTTGTTGGCATGCATAAAAAAAATTCAGCTA
250 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTA
* * * * *
13714121 AAAACTCGAAGTGTACAAGATTTTGAGACCATTTCAAAAAAAGTGTCCCCGTTTTAGACACTGTA
314 AAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTA
*
13714186 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGT
378 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
13714251 TTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
443 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* ** * * * *
13714316 CACCCCCCCCGG-CCCCCCAATCACCGAAACCCCGATGCCGTCGAAT-AGGTTCTCCGACGATGC
508 CA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCG-GTCAGGTTCTCCGGCGATGC
* * * *
13714379 TCTGGTGATGGTGCCCAGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
570 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
13714444 ATCGCAACCCTCGGTCTGGTCCGATCTCAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAAT
635 GTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
*
13714508 GAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
700 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * *** * * * * *
13714573 GGATGTGCAAGTCGGGGATCGACCGAGTCCCCCTCTGTTTACTGTCGATCCTACTACCGCAAGCC
765 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCC
** * * *
13714638 TCGGTCTGG-TCTGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
829 TCAATCCGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-
13714702 CGGGA
889 C--GA
*
13714707 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCACGCCGTGGATCGATAGGGTGGTA
1 -GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
13714772 GGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
65 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * ** *
13714837 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTCCCTATTTTTCACG
130 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * * *
13714902 ATTTTTGAAACTTTTTGCGATT-GGAGGTTTTTTAAAATTTTTT-TGAAAAGAGTTTTGGCCCCA
195 ATTTTCGAAACTTTTTGCGGTTCGG-GATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCA
* * *
13714965 AACTTGGTAGACATGATCCCTATATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGA
258 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
13715030 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTG
323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
13715095 GCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTGGGGTTTGATGAGGG
388 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * * * * *
13715160 ATAAGGGGCCAATATAATGGCCAAATATCAGCACCCATTGTACATCATGTGCGCACACCCCCCAG
453 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * *
13715225 CCCCCCCGATCG-CTGAAACGCTAATGCCGCCGGTCAGGTTCT-C--C-A--AT-----GATGGT
518 CCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
* * *
13715278 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCGTGTGCTG-C-C-A----C
582 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTC
* * * * ** *
13715336 AAT--GCT-CG--GTT---C---G---G---TCC-AAT-CTTAGACTCAGAATGAACTTCGTATG
647 GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
13715382 CCTAAGTCAAAACACGAAACTAGC-AGCGGGCGCTAAGTCGGCCAGAGGGGCGGGATGCGCAAGT
712 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * ** * *
13715446 TGGGGATTC-ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGCTC
777 CGGGGA-TCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGGTT
* *
13715510 CTATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCA
840 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A
* * * *
13715565 GGCGGACGGGCGTGCTGCACTACACTGGCCAGAGAGACGGAATGCGCTAGCCGTGGATCGATAGG
1 ---GG-CGGGCG-G--GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * **
13715630 GTGGTAGGTGGGTTTAGGGATATCTTCATATTTCTGCATGCCAATGCCTTTTTTATCACTTGTAA
59 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
13715695 ATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTT
124 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * **
13715760 TTCACGATTTTCGAAACTTTTTACGGTT-GGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG
189 TTCATGATTTTCGAAACTTTTTGCGGTTCGG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* * * *
13715824 CCGCAAACTGGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAA
253 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * * *
13715889 CTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTACAAACACTTTAATGGC
318 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
13715954 TACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTCAAGGTTTGAT
383 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
13716019 GCGAGATAGGGTGCCAATATAAGGGCCAAATACCAGCACCCTTCGCACATCATGTGCGCACACCC
448 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
13716084 CCCGGCCCCCCCGATCATCGGAACCCCAAAGCCGTCAGTCAGGTTCT-C--CG--G-T-----GA
513 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
* * ** * *
13716138 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACAAGCCCGAGCCCAGCATACGTTGCCGCAAC
578 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAC
* * * **
13716203 CCTCGGTCCGATCTGATCTTAGGTTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
643 CCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
13716268 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCAGAGGGGCGGGATGCAC
708 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * **
13716333 AAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGTCGATCCTGCTGATACAACCCTCAATCCG
773 AAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG-CCCAACCCTCAATCCG
* * *
13716398 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCA
837 GTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A
* * * *
13716456 GGCGGGTAGGTGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTG
1 GGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * *
13716521 GTAGGTGGGTTTAAGCACATCTTCATATTTCTATC-TGCCAAAGCCATTTTTATGGCTTGTAATT
62 GTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
13716585 TCATTCAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
126 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
13716650 CACGATTTTTGAAAATTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCAC
191 CATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * *
13716715 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGAC-AACAAATTCAGCTAAAAACTC
256 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
13716779 GAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTAC
321 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
13716844 TGGCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
386 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
13716909 GGTTAGGGGGCCAATATAAGGGCCGAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC
451 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
13716974 GGCCCCCCCGATCGTCGGAACCCCAATGCCG-C---C-GG-TCT-----GATTCTCCGACGA---
516 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* * *
13717025 TGCTCCGACGAAGAAAAATACGAG-ACCAGCACATGCCCGAGCCCTGCATGTGCTG-C-C-A---
581 TGCCCCGACGAAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
* * * * *
13717083 -C-A---AG-CC--TC--GGTCT--G---G---TCCG-GT-CTTAGACTGGGAATGAACTCTGTA
645 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * ** * * * * * * * *
13717128 TACCTAAGCCAACTGATGAAACGAGCGGGTGGACGCT-ATGCCGACCAGAGAGACGGGGTGCGCA
710 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGGGGCGGGATGCGCA
* * ** *** ** * ** *
13717192 AGCCGAGGATCGGTCGGGTCCCATTCTACGTGCAATCGATCCAACTACCGCAACCCTCGGTCTGG
774 AGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGG
* * * * * *
13717257 -TCTGATCTTAGACTAGGAATGAACTCTGTATGCATATGCCAACCGATGAAACGAGCGGGCGGGC
838 TTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A---------C
13717321 GA
890 GA
* *
13717323 GCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGG
1 --GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*** *
13717388 TAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAACTC
63 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
13717453 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCA
128 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * **
13717518 TGATTTTCGAACCTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTCGGGTGGAGTTTTGGCCCCA
193 TGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * * * * * *
13717583 AACTTGGTAGGCGTGATCCTTCTATTTTTTTTCGCATGCACAAAAAAATTCAGGTAAAAACTTGA
258 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13717648 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTG
323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
13717713 GCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGACGG
388 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
13717778 ACAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCTT
453 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--
* * * * * * ** **
13717843 GTCCCCCCCGATTGCCAGAACCCCAATGCCGCCAGTCAGGTTCTTTGTTGATGCTCCGGCGATGG
516 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* **
13717908 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCTACCGCAACCCT
581 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * * * *
13717973 CGGTCCAGTCTGATCTTAGACTAGGAATAAACTCCGTATTCTTAGACTGGGAATGAACTCCGTAT
646 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
13718038 GCCTAAGTCAACCTACAAAATGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAG
711 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * ** * * *
13718103 TCTGGGATTGGTCGGGTCCCCCTTTGCGTGCTATCGATCCTACTACCGCAACCCTCAATCCAGTT
776 CCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGGTT
** * * * *
13718168 TGATCTTAGACTGGGAGTGAACTCTGAATGCCTAAGCCAACCGACAAAACGA
840 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * **
13718220 GCGGACGGGCGAGCACTACGCCGGCCAGAGAGATGGGATGCGCAAATCGTGGATCGATAGGGTGG
1 --GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
** *
13718285 TAGGTGGGTTTAGGCTTATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTCGTAAATTC
63 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
13718350 ATACAATGGTCCCTTAAGCCTTCACGTGAAGATTCCTGGCAAGACGACTCGTTTTCTATTTTTCA
128 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
13718415 CGATTTT-GAAACTTTTTGCGGTTCGAGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCA
193 TGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
** * * *
13718478 AACTTGGTAGATGTAATCCTTGTATTTCTGTTGGCATGCACAAAAAAATTCAGCTAAACACTCGA
258 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
13718543 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTG
323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
13718608 GTAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGG
388 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
13718673 ATATGAGGCCCATATAAGGGCCAAGTACCAGCA-CCATCACACATCATGTGCGCACACCCCCTCG
453 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CG
* * * * *
13718737 G-CCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATTCTCCAGCGATGGT
517 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
* * *
13718801 GCCCCGACGAAGAAAAATGTGGCAACAGCACATGCCCAAGCCCAGCATGTGCTG-CTGCAA-CC-
582 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCT
* *
13718863 C--T-C-G---G-TC-----C-----A-G---TCCG-AT-CTTATACTGGGAATGAACTCCATAT
646 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
13718904 GCCTAAGTCAACCCATGAAATGAACGTGCGGACGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAG
711 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* *** * * ** * * *
13718969 CCAGGGATCGAAAGGGTCCACCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCAGTCC-GAT
776 CCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCTCAATCCGGTT
* *
13719033 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCACCAATGAAACGAGCAAGCG-
840 C-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC---G--ACGA--AA-CGA
* *
13719093 GGCGGGCAGGCGGGCACTACGCCGTCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTG
1 GGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
13719158 GTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATT
62 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * * * *
13719223 CATACAATGGTCCTTTAAGCCTTCAAGTGAAGTTTCGTGGCGAGACGAGTCATTTTCTATTTTTC
127 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * ** * * **
13719288 ATGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCGGAATGTCTTTTGGCCCC
192 ATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* * *
13719353 AAACTTGGTAGACATGATCCTTGTGTTTTTGTTGGCATGCATAAAAAATTTCAGCTAAAAACTCG
257 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
13719418 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
322 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
13719483 GGCAGCAAACCTGCAAAGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTTGGTGAGG
387 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
13719548 GATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATATGCGCACA-------
452 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * **
13719606 --CCCCCCGATCGCCGGAACCCCAACGTCGTCGGTCAGGTTCTCCGACGATGCTTTGGCGATGGT
517 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
** * * * *
13719669 GCCCCGGTGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTC
582 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA-CC-C
*
13719734 GGTCCGATCCGATATTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGCATG
645 --T-CGAT-C---------C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATG
* * *
13719799 CTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
686 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
13719864 CGGCCATAGGGGCGGGATGCGCATGTCGAAGATCTGCTGGATCCCCCTCT--GTG-T---G---C
751 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
*** * * * *
13719920 TGCTG--CAACCCTTGGTCC-GATCTGATCTTAGACTGGGGATCAACTCCGTATGCCTAAGCCAA
816 TGCTGCCCAACCCTCAATCCGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13719982 CCGATGAAACATA
880 CCGACGAAAC-GA
* * *
13719995 CGGGCGGGCGAGCGGGAGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCAAT
1 --GGC--G-G-GC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
** * **
13720060 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTCATTTCTTG
56 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
13720125 CAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
121 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
13720190 TTTTTAATGATTTTGGAAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTT-TGAAAGGAGTTT
186 TTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTT
** ** * ** * *
13720254 TTTCCTTAAACCTGGTAGAGGTGATCCTTGTATTTTTTTTTTTGCATGCACAAAAAAATTCAGCT
250 TGGCCCCAAACTTGGTAGACATGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCT
13720319 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
313 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
13720384 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGT
378 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* **
13720449 TTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCACATGCGCA
443 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
13720514 CACCCCCCGACCTCCCGGA-CG-CAGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTC
508 CACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* * * *
13720577 TGACGATGGTGCCCCGACGAAGAAAAATGCGACACCA--ACATTGCCCGAGCCCATCATGTGCTG
572 CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTG
* * * * *
13720640 TTGCAACCCTCGGTCAGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
636 TCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * ** * **
13720705 AACTCTGTATGCCAAAGTGAACCCATGAAACGAGCGTGCGGATGCTCAGCTGGCCAGAGGGGCAA
701 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * *** * * * * * *
13720770 GATGCGTAAGCCGAGGATCGAAAGGATCCACCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCT
766 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCCCAACCCT
* * * * * *
13720835 CAGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACAAAACGA
830 CAATCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
13720897 GCGGGCGGGAGGACGACCGGGCAGTATC-CTGACCAGAGAGACGAGATGCAG-AAGCCGTGGATC
1 ---GGC----GG--G--CGGGCACTA-CGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATC
* * **
13720960 GATAGGGTGGTAGGTGGGTTTAGGCATATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGC
53 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
13721025 TTGTAAATTCATACAATGGTCCCTT-AGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
118 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
13721089 CTATTTTTCATGATTTTTGAAACATTTTACGGTTCGGTATTTTTTAAAACTTTTTT-GGAAGGAG
183 CTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCAGAAGGAG
* * * **
13721153 TTTTGGCCCCAAAATTGGTAAACGTGATCCTTGTATTTTTGTTGATATGCACAAAAAAATTCAGC
247 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
13721218 T-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTT
312 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
13721282 AATGGCTACTGGCAGCAAACATATAAAATCTCAAATGC-CTTTAAGGGGGTGTGAGTTCTCGAGG
377 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
13721346 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
442 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
13721411 ATAGCCCCCCGGCCCACCCGATCGTCGGAACCCCAATGCCGTAGGTCAGGTTCTCCGACGATGCT
507 ACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT
* * * * *
13721476 CCGGTGATGCTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATCTGCTA
571 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * * *
13721541 CCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGTCTGTGAATG
636 TCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
13721606 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAAAGGGGCGG
701 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
** * ** * **
13721671 GATGCGCAAGCCGGGGATCGATCGGGTCTCCCTCTGTGTGTTTTCGATCCTGCTGCCGCAACCCT
766 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC-CAACCCT
*** * ** * * *
13721736 TGGTCTGG-TCTGGTCTTAGATTGGGAAATGAACTTCGTATGCCTAAGCTAACCGACGAAACGA
830 CAATCCGGTTC-AATCTTAGACTGGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
** * * *
13721799 GCGGGCGGGCGGGCGGGCACTACATCAGCCAGAGAGACGGGAAGTGCAAGCCGTGGATCGATAGG
1 -------GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
**
13721864 GTGGCT-GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTA
59 GTGG-TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
13721928 AATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
123 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * ** *
13721993 TTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATCTTTTAAAATTTTTTTGGAAAGAGTTTTGG
188 TTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* *
13722058 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAA
253 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
** * *
13722123 CTCGAAGTGTACAAGATTTTGTGACCATTTCCAAAAAGTGTCCCTATTTAAGACACTTTAATGGC
318 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
13722188 TACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTTGAGATTTGAT
383 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
13722252 GTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTATCCATCGCACATCATGTGCGCACACCC
448 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * * * * * **
13722317 CCCCGGCCCACCCGATCGTCGAAACCCCAATGCCGCCGGTCATGTTCTCCGGTGTTGCTCTAGCG
512 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCG
* ** * ** * *
13722382 ATGGTGCCCAGGTGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTGGT-GTA
577 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GTCGCA
13722446 A-CC-C--T-C-G---G----T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTC
641 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** * * *
13722485 TATATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGC
706 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** * * * * *
13722550 ATAAGCCGGGGATCGGCCGTGTCCCCCTCTACGTGATGCCAATCCTGCT-ACCATAGCCC-CAGT
771 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCCA-A-CCCTCAAT
* * **
13722613 CCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGTGTAAGCCAACCGACGAAACGAGCGGGC
834 CCGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-----C
13722677 GA
890 GA
* * * ** * *
13722679 GCGGGCGGGCAGGTGAGCACTTCGTCGGCCAGAGAGGCGGGATGCGCAAGATGTGGATTGATGGG
1 ---GGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*** ** **
13722744 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCTGATGCCATTTTCGTGGCTTGTAA
59 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
*
13722809 ATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGC-AGAC-ACTCGTTTTCTATTT
124 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * * * *
13722872 TTCACGATTTTTAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCCGAAGGATTTTTGGC
189 TTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
* * *
13722937 CCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGGAC-AAAAAATTCAGCTAAAAAC
254 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
**
13723001 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTAGAATGGCT
319 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
13723066 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTGGAGGTTTGGTG
384 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
13723131 AGGGATACGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
449 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* ** * * *
13723196 CCCGGCCCCCCCGATCGCCGGAACCCCAATGTTGTCGGTCAGGTTC-CCTAGTGATGCTCCGACG
513 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GGCGATGCTCCGGCG
* * * * *
13723260 ATGGTGCCCCGATGAAGAAAAATGTGGCACCACCACATGCCCGAGCCCTGCATGTGCT-ACTGCA
577 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCA
* * * *
13723324 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
641 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
13723368 CCACGAAGTG
Statistics
Matches: 23539, Mismatches: 4215, Indels: 3334
0.76 0.14 0.11
Matches are distributed among these distances:
843 4 0.00
844 6 0.00
845 4 0.00
846 14 0.00
847 16 0.00
848 12 0.00
849 3 0.00
850 2 0.00
851 2 0.00
852 10 0.00
853 66 0.00
854 18 0.00
855 277 0.01
856 206 0.01
857 24 0.00
858 182 0.01
859 9 0.00
860 172 0.01
861 144 0.01
862 57 0.00
863 9 0.00
864 582 0.02
865 11 0.00
866 433 0.02
867 204 0.01
868 127 0.01
869 40 0.00
870 161 0.01
871 25 0.00
872 44 0.00
873 30 0.00
874 306 0.01
875 46 0.00
876 539 0.02
877 699 0.03
878 442 0.02
879 194 0.01
880 173 0.01
881 270 0.01
882 233 0.01
883 266 0.01
884 275 0.01
885 215 0.01
886 226 0.01
887 1729 0.07
888 742 0.03
889 30 0.00
890 471 0.02
891 2549 0.11
892 762 0.03
893 101 0.00
894 58 0.00
895 590 0.03
896 236 0.01
897 671 0.03
898 319 0.01
899 479 0.02
900 473 0.02
901 965 0.04
902 1196 0.05
903 698 0.03
904 1369 0.06
905 416 0.02
906 37 0.00
907 10 0.00
908 305 0.01
909 224 0.01
910 220 0.01
911 19 0.00
912 22 0.00
913 9 0.00
914 5 0.00
915 19 0.00
916 19 0.00
917 43 0.00
918 110 0.00
919 28 0.00
920 98 0.00
921 7 0.00
922 8 0.00
923 10 0.00
924 13 0.00
925 15 0.00
926 17 0.00
927 6 0.00
928 110 0.00
929 6 0.00
930 1 0.00
933 6 0.00
934 4 0.00
935 630 0.03
936 10 0.00
937 3 0.00
938 1 0.00
939 4 0.00
940 7 0.00
941 4 0.00
942 4 0.00
943 4 0.00
944 7 0.00
945 2 0.00
946 2 0.00
947 2 0.00
948 7 0.00
951 1 0.00
952 3 0.00
954 5 0.00
955 10 0.00
956 5 0.00
957 2 0.00
958 2 0.00
959 1 0.00
961 2 0.00
962 1 0.00
963 7 0.00
964 10 0.00
965 6 0.00
966 10 0.00
967 17 0.00
968 4 0.00
969 8 0.00
970 3 0.00
971 1 0.00
972 2 0.00
973 3 0.00
974 1 0.00
975 7 0.00
976 5 0.00
977 4 0.00
978 17 0.00
979 7 0.00
980 8 0.00
981 11 0.00
982 7 0.00
983 1 0.00
984 15 0.00
985 7 0.00
986 8 0.00
987 7 0.00
988 12 0.00
990 13 0.00
991 17 0.00
992 13 0.00
993 3 0.00
994 19 0.00
995 18 0.00
996 25 0.00
997 15 0.00
998 28 0.00
999 29 0.00
1000 34 0.00
1001 33 0.00
1002 22 0.00
1003 27 0.00
1004 18 0.00
1005 10 0.00
1006 8 0.00
1007 10 0.00
1008 15 0.00
1009 6 0.00
1010 13 0.00
1011 5 0.00
1012 10 0.00
1013 13 0.00
1014 15 0.00
1015 9 0.00
1016 10 0.00
1017 20 0.00
1018 18 0.00
1019 12 0.00
1020 12 0.00
1021 29 0.00
1022 6 0.00
1023 13 0.00
1024 89 0.00
1025 78 0.00
1026 106 0.00
1027 82 0.00
1028 77 0.00
1029 89 0.00
1030 83 0.00
1031 99 0.00
1032 102 0.00
1033 108 0.00
1034 113 0.00
1035 96 0.00
1036 83 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATC
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCCAACCCTCAATCCGGTTCAATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
Found at i:13696422 original size:26 final size:26
Alignment explanation
Indices: 13696393--13696445 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13696383 CTGGTCCGAT
*
13696393 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13696419 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13696445 C
1 C
13696446 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13698221 original size:26 final size:26
Alignment explanation
Indices: 13698192--13698275 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
13698182 CCGATCCGAT
*
13698192 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13698218 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13698244 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13698270 CCTTAG
1 -CTTAG
13698276 TCAACCCACG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 49 0.91
27 5 0.09
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13700047 original size:26 final size:26
Alignment explanation
Indices: 13700011--13700063 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13700001 CCGATCCGAT
13700011 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13700037 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13700063 C
1 C
13700064 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13700934 original size:26 final size:26
Alignment explanation
Indices: 13700898--13700950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13700888 CGGGTCCGAT
13700898 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
13700924 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
13700950 C
1 C
13700951 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:13702700 original size:26 final size:26
Alignment explanation
Indices: 13702671--13702723 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13702661 CCGGTCCGAT
13702671 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13702697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13702723 C
1 C
13702724 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13703595 original size:26 final size:26
Alignment explanation
Indices: 13703566--13703618 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13703556 CCGATTCAAT
*
13703566 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13703592 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13703618 C
1 C
13703619 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13706096 original size:26 final size:26
Alignment explanation
Indices: 13706058--13706110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13706048 CTGAGTCGAT
*
13706058 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13706084 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13706110 C
1 C
13706111 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13706979 original size:26 final size:26
Alignment explanation
Indices: 13706950--13707002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13706940 CTGGTCCGAT
*
13706950 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13706976 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13707002 C
1 C
13707003 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13708454 original size:26 final size:26
Alignment explanation
Indices: 13708418--13708470 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13708408 CTGATTCGAT
13708418 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13708444 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13708470 C
1 C
13708471 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13711821 original size:26 final size:26
Alignment explanation
Indices: 13711784--13711835 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13711774 CTATCTGATT
*
13711784 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
*
13711810 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
13711836 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:13714500 original size:25 final size:26
Alignment explanation
Indices: 13714472--13714520 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13714462 GTCCGATCTC
13714472 AGACT-GGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
13714497 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
13714521 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:13718025 original size:26 final size:26
Alignment explanation
Indices: 13717986--13718037 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13717976 TCCAGTCTGA
13717986 TCTTAGACTAGGAATAAACTCCGTAT
1 TCTTAGACTAGGAATAAACTCCGTAT
* *
13718012 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATAAACTCCGTAT
13718038 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TCTTAGACTAGGAATAAACTCCGTAT
Found at i:13719825 original size:26 final size:26
Alignment explanation
Indices: 13719748--13719818 Score: 142
Period size: 26 Copynumber: 2.7 Consensus size: 26
13719738 CGATCCGATA
13719748 TTAGACTGGGAATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCGCATGC
13719774 TTAGACTGGGAATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCGCATGC
13719800 TTAGACTGGGAATGAACTC
1 TTAGACTGGGAATGAACTC
13719819 TGTATGCCAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGCATGC
Found at i:13720700 original size:26 final size:26
Alignment explanation
Indices: 13720664--13720716 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13720654 CAGGTTCGAT
13720664 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13720690 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13720716 C
1 C
13720717 CAAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13721604 original size:26 final size:26
Alignment explanation
Indices: 13721565--13721617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13721555 CTGGTCTGAT
13721565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
13721591 CTTAGTCTGTGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13721617 C
1 C
13721618 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13722260 original size:900 final size:897
Alignment explanation
Indices: 13718879--13723367 Score: 5436
Period size: 900 Copynumber: 5.0 Consensus size: 897
13718869 CCAGTCCGAT
* ** * * * *
13718879 CTTATACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAACGTGCGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
13718944 CGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGAAAGGGTCCACCTCTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAAAGGGTCC-CCTCTGCGTGCTGTCGATCC
* * *
13719009 TGCTACCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCA
130 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13719074 CCAATGAAACGAGCAAGCGGGCGGGCAGGCGGGCACTACG-CCGTCCAGAGAGACGGGATGCGCA
195 CCGACGAAAC--G--AGCGGGCGGGCGGGCGGGCACTACGTCAG-CCAGAGAGACGGGATGTGCA
* * **
13719138 AGCCGTGGATTGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
* * * *
13719203 ATTTTCATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCAAGTGAAGTTTCGTGGCGAGA
320 ATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * **
13719268 CGAGTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * ** * * *
13719333 TCGGAATGTCTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTGTTTTTGTTGGCATGCATAAA
450 TTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
13719398 AAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13719463 CAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAGTCTCAAATGCTCTTTAAGGGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
13719528 GTTCTCGTGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
13719593 TCATATGCGCACA--------CCCCCCGATCGCCGGAACCCCAACGTCGTCGGTCAGGTTCTCCG
710 TCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCG
* * * * *
13719650 ACGATGCTTTGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGC
775 ATGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
13719715 ATGTGCTGCCGTAACCCTCGGTCCGATCCGATATTAGACTGGGAATGAACTCCGCATGCTTAGAC
840 ATGTGCTGCTGCAA-CC-C--T-CG----G----T---CT-GG--T---CT--G-AT-CTTAGAC
*
13719780 TGGGAATGAACTCCGCATG
879 TGGGAATGAACTCCGTATG
* *
13719799 CTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** ** *
13719864 CGGCCATAGGGGCGGGATGCGCATGTCGAAGATCTG-CTGGATCCCC-CT-C-TG-TGT-G---C
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GAAAGGGTCCCCTCTGCGTGCTGTCGATCC
** * * *
13719920 TGCT---GCAACCCTTGGTCCGATCTGATCTTAGACTGGGGATCAACTCCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13719982 CCGATGAAACATACGGGCGGGCGAGCGGGAGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAA
195 CCGACG--A-A-ACGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGTGCAA
*
13720047 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
** * *
13720112 TTTTCATTTCTTGCAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGAC
321 TTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13720177 GACTCGTTTTCTATTTTT-AATGATTTTGGAAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTT
386 GACTCGTTTTCTATTTTTCAA-GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
** ** * * * *
13720241 TT-GAAAGGAGTTTTTTCCTTAAACCTGGTAGAGGTGATCCTTGTATTTTTTTTTTTGCATGCAC
450 TTGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCAC
13720305 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
512 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
13720370 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
577 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
13720435 TGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGC
642 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * * * *
13720500 ACATCACATGCGCACACCCCCCGACCTCCCGGA-CGCAGGAACCCCAATGTCGCCGGTCAGGTTC
707 ACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTC
* * * *
13720564 TCCGGTGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGACACCA--ACATTGCCCGAGC
771 TCCGATGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACA-TGCCCGAGC
* * * *
13720627 CCATCATGTGCTGTTGCAACCCTCGGTCAGGT-TCGATCTTAGACTGGGAATGAACTCTGTATG
835 CCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATG
* * * **
13720690 CTTAGACTGGGAATGAACTCTGTATGCCAAAGTGAACCCATGAAACGAGCGTGCGGATGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
13720755 TGGCCAGAGGGGCAAGATGCGTAAGCCGAGGATCGAAAGGATCCACCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAAAGGGTCC-CCTCTGCGTGCTGTCGATCC
* * ** *
13720820 TGCTATCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
13720885 TCGACAAAACGAGCGGGCGGGAGGACGACCGGGCAGTATCCTGA-CCAGAGAGACGAGATGCAG-
195 CCGACGAAACGAGCGGGCGGGCGG--G--CGGGCACTA-CGTCAGCCAGAGAGACGGGATG-TGC
* *
13720948 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTTATATTTCTGTGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
* *
13721013 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AGGCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
13721077 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCGGTATTTTTTAAAACTTT
384 ACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * **
13721142 TTTGGAAGGAGTTTTGGCCCCAAAATTGGTAAACGTGATCCTTGTATTTTTGTTGATATGCACAA
449 TTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
13721207 AAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13721271 TCAGACACTTTAATGGCTACTGGCAGCAAACATATAAAATCTCAAATGC-CTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
13721335 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13721400 ATCATGTGCGCATAGCCCCCCGGCCCACCCGATCGTCGGAACCCCAATGCCGTAGGTCAGGTTCT
709 ATCATGTGCGCACA-CCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCT
* * * * * *
13721465 CCGACGATGCTCCGGTGATGCTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
772 CCGATGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * **
13721530 AGCATCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
837 AGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13721591 CTTAGTCTGTGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
13721656 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCTCCCTCTGTGTGTTTTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAAAGGGTC-CCCTCTGCGTGCTGTCGATCC
* ** * * * * *
13721721 TGCTGCCGCAACCCTTGGTCTGGTCTGGTCTTAGATTGGGAAATGAACTTCGTATGCCTAAGCTA
130 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGG-AATGAACTCCGTATGCCTAAGCCA
* *
13721786 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACATCAGCCAGAGAGACGGGAAGTGCAAGCC
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGTGCAAGCC
13721851 GTGGATCGATAGGGTGGCT-GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
259 GTGGATCGATAGGGTGG-TAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
* *
13721915 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGA
323 TTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
13721980 CTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATCTTTTAAAATTTTTTTG
388 CTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTG
*
13722045 GAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAA
453 GAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
** * *
13722110 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCCAAAAAGTGTCCCTATTTAAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
13722175 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
13722239 CTTGAGATTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTATCCATCGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
13722304 TGTGCGCACACCCCCCCGGCCCACCCGATCGTCGAAACCCCAATGCCGCCGGTCATGTTCTCCGG
713 TGTGCGCACA-CCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGA
* * * * * ** *
13722369 TGTTGCTCTAGCGATGGTGCCCAGGTGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAACA
776 TGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
13722434 TGTGCTGGTGTAA-CC-C--TC--G---G----T---C------TG-A-TCCG-AT-
841 TGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13722465 CTTAGACTGGGAATGAACTCTATATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *** * * * * *
13722530 CGGCCAGAGGGGTGGGATGCATAAGCCGGGGATCGGCCGTGTCCCCCTCTACGTGATGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAAAGGGT-CCCCTCTGCGTGCTGTCGATCC
** * * **
13722595 TGCTACCATAGCCC-CAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGTGTAAGCCAA
130 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13722659 CCGACGAAACGAGCGGGCGAGCGGGCGGGCAGGTGAGCACTTCGTCGGCCAGAGAGGCGGGATGC
195 CCGACGAAACGAGC--G-G-GCGGGCGGGC--G-G-GCACTACGTCAGCCAGAGAGACGGGATGT
** * * * **
13722724 GCAAGATGTGGATTGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCTGAT
252 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
* *
13722789 GCCATTTTCGTGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGC-
317 GCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
13722853 AGAC-ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTTCGAGATTTTTTAAAATT
382 AGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
** * * * *
13722917 TTTTCCGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGGAC
447 TTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
13722982 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
512 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
**
13723046 TTTCAGACACTAGAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
577 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
13723111 TAAGTTCTGGAGGTTTGGTGAGGGATACGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGC
642 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
13723176 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTTGTCGGTCAGGTT
707 ACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTT
* * * * *
13723241 C-CCTAGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCACCACATGCCCGAG
770 CTCCGA-TGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
13723305 CCCTGCATGTGCTACTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
834 CCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
13723368 CCACGAAGTG
Statistics
Matches: 3086, Mismatches: 390, Indels: 203
0.84 0.11 0.06
Matches are distributed among these distances:
872 35 0.01
873 19 0.01
874 120 0.04
875 4 0.00
876 14 0.00
877 117 0.04
878 298 0.10
879 11 0.00
880 140 0.05
882 2 0.00
884 1 0.00
887 2 0.00
890 1 0.00
891 118 0.04
892 4 0.00
893 4 0.00
894 4 0.00
895 2 0.00
896 5 0.00
897 5 0.00
898 212 0.07
899 282 0.09
900 389 0.13
901 211 0.07
902 168 0.05
903 175 0.06
904 4 0.00
907 4 0.00
908 298 0.10
909 2 0.00
910 218 0.07
911 6 0.00
912 4 0.00
913 1 0.00
914 1 0.00
915 3 0.00
916 7 0.00
917 24 0.01
918 75 0.02
919 7 0.00
920 88 0.03
921 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAAAGGGTCCCCTCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGTGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTC
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAA
AGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATG
CTCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13725145 original size:25 final size:26
Alignment explanation
Indices: 13725098--13725149 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13725088 CTGGTCTGAT
13725098 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
13725124 CTTAGATT-GGAGTGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
13725149 C
1 C
13725150 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:13727483 original size:882 final size:886
Alignment explanation
Indices: 13723412--13727771 Score: 5232
Period size: 882 Copynumber: 4.9 Consensus size: 886
13723402 GATCGGTCAA
* ** * * * *
13723412 GTCCCCCGCTACGTGCTGTTGATCCTGCTGTCGCAACCCTCGGTCCAGTCCTAATCTTAGACTAG
1 GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTAGT-CTGATCTTAGACTGG
* *
13723477 GAATGAACTCCCTATGCCTAAG-CATCCGATGAAACAAGCAGGCGGGCGGGTGGACGGGCACTAC
65 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC--G-A-GCGGGC--G-GG-CGGGCACTAC
* * *
13723541 GTCGGCCAGAGAGACGGGATACGCAAGCCAT-AATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
122 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * * *
13723605 CTTAATATTTTCTGTGTTCCAAAGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAG
187 CTTCATA-TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
13723670 -CTTCACGTGAAGTTTCATTGCAAGACGATTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
251 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * * * * *
13723734 GCTGTTCGAGA-TTTTTAAAATTTTTTTGCAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATC
316 ACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
13723798 CTTCGTATTTTTGTTGGCTTGC-C-AAAAAAGTCAGCT-AAAACAACGAAGTGTAACAAGATTTT
381 CTT-GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGT-ACAAGATTTT
* * * * *
13723860 CTGACCATTTGAGAAAAGTGTCCCCATTTAAGACACTTTAATGGCTTACTTGCAGTTAAACCTGT
443 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-TACTGGCAG-CAAACCTGT
* * *
13723925 AAAATGTC-AATGCGCTTTAAAAGGCGTGTTGAGTTCTCGAGGTTTGAATGAGGGATAGGGAGGG
506 AAAATCTCAAATGCTCTTT-AAAGGGGTG-TGAGTTCTCGAGGTTTG-ATGAGGGATA-GG-GGG
*
13723989 CCAATATAAGGGCCAAGGTAACCAG--CCCATCAGACATCAATGTGCGGCACA-CCCCCCGACCC
566 CCAATATAAGGGCCAA-GT-ACCAGCACCCATCACACATC-ATGTGC-GCACACCCCCCCGACCC
* * * * * *
13724051 CCACGATGCGTCGGGAAACCTAATACCG-TCGATCAGGTTCTCCGGTGATGCACCGACGATGGTG
627 CC-CGAT-CG-CCGGAACCCCAATGCCGCT-GGTCAGGTTCTCC------G---CGATGATGGTG
* * * * *
13724115 CCCTAAGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTACTGCTGCAACCCT
679 CCC--CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * * *
13724180 CGGAT-TGGTCCGATCTTAGACTGGGAATGACCTCCGTATCCTTAGATTGGGAATGAACTTCATA
742 CGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTA
* * * * * *
13724244 TGCCTAAGTCAACCCACCAAATGAGCGTGCGGGCACTCAGTCGGGCAAAGGGGCGGGATTCCCAA
806 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCCAA
* * *
13724309 G-CTGGGGATTGGCCCG
871 GTC-GGGGATCGACCGG
* * * * * * * *
13724325 ATCCCCCTCTACGTGCTACCGATCTTGCTACTGCAACCCTCGATCCAGTCTGATCTTAGATTGGG
1 GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGG
* *
13724390 AATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCATTCGGGCGGGCACT-CTGTCG
66 AATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGG----CGGGCGGGCACTAC-GTCG
13724454 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGCACATCTT
126 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTT
* * * *
13724519 CATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCCT
190 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
13724584 CACGTGAAGTTTCATGGCAAGAGGATTCATTTTCTTTTTTTCATGATTTTTGAAACTTTTTACGG
255 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * *
13724649 CTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCGAAA-TTGGGTAGACATGATCCT
320 TTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTT-GGTAGACGTGATCCT
* * * * * *
13724712 TGTGTTTTTGTTGGCATGTATAAAAAAATTTAGCTAAAAACGCAAAGTGTACAAGATTTTGTGAC
383 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
13724777 CATTTGAGAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAAACCTGTAAAATC
448 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATC
* * * *
13724842 TCAAATGCTCTTTAAAGGGGTGTGAATTTTCGATGTTTGATGAGGGATAAGGGGCCAATATAAGC
512 TCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-
* *
13724907 GGCCAAGTACTAGCACCCATCAAACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCCGGAA
576 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCCGGAA
* *
13724972 CCTCAATGCCG-TCGGTCGGAGTTCTCCGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAA
641 CCCCAATGCCGCT-GGTCAG-GTTCTCCG-CGA----T----GATGGTGCCCCGACGAAGAAAAA
** *
13725036 TGCTACACCAGCACATGCCCGAGCCCAGCATGTTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
695 TGCGGCACCAGCACATGCCCGAGCCCAGCATG-TGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
* *
13725101 AGATTGGGAATGAACTCCGTATGCTTAGA-TTGGAGTGAACTCCGTATGCCTAAGTC-ACCCACG
759 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACG
* * *
13725164 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCCCAAGTCGGGGATCGCCCGG
824 AAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCCAAGTCGGGGATCGACCGG
* ** * * * *
13725227 GTCCCCCTCTGCGTGCTGCTTATCCTGCTGCCACATACCCTTGATCTCA-TCTGATCTTAGACTA
1 GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCA-ACCCTCGGTCT-AGTCTGATCTTAGACTG
* * * * * *
13725291 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGACGGGAGCGCAATACGCCGGC
64 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGG-CGGGCGGGCACTACGTCGGC
* *
13725356 CAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCAT
128 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
13725420 ATTTCTACGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCT-CCTTAAGGCCTTCA
193 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTTCA
** * *
13725484 CGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTTCTCATTATTTTTGAAACTTTTTACGGTT
257 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* * *
13725549 TGAGATTTTTT-AAA-TTTTTCGGTAGGAGTTTTGG-CCCAAACTTGGTAGACATGATCCTTGTA
322 TGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
13725611 TTTTT-TCGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATT
387 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
13725675 TGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAA
452 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
13725740 TGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAA
517 TGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
13725805 GTACCAGCACCCATCGCACATCATCTGCGCACACCCCCCCGGCCCCCCGATCGCCAGAACCCCAA
582 GTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAA
* **
13725870 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTAGCAC
647 TGCCGCTGGTCAGGTTCTCC-GCGA--------TGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * *
13725935 CAGCACATGCCCGAGCCCAACA-----T------A---T--G-C---TCC---CATA-AC--GGT
703 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* * * *
13725974 CTG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGTGCG
768 ATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
* * * * * *
13726035 TGTGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGACCGACAGG
833 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCCAAGTCGGGGATCGACCGG
* * * ** * * *
13726089 GTGCCCCTCTGCATGCTATCGATCCTACTGTCGCAACCCTCGGT-TCGGTCTGATCTTAGACTGG
1 GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-AGTCTGATCTTAGACTGG
*
13726153 GAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGTGGGCTGGCGGGCACTAC
65 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC------G--GGCGGGCACTAC
* *
13726218 GTCGGGCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
122 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
** **
13726283 CTTCATATTTCTATGTGCCAATGCCATTTTTATGAATTGTAAATTCATACAATGGTCCCTTAAGC
187 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
13726348 CTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
252 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
** * *
13726413 CGGTTCT-GGATTTTTTAAAATATTTTTTAGAAGGAGTTTTGGCCCCGAACTTGGTA-ATTGTGA
317 CGGTT-TGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGA
13726476 TCCTTGTATGTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
379 TCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
13726540 GTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
443 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
13726605 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATAT
508 AATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * *
13726670 AAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACAACCCCCTGGCCCCCCGATCGTCG
573 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCCG
*
13726735 GAACCCCAATGCCGCTGGTCAGGTTCTCCG-G-TGATGGTGCCCCGACGAAGAAAAATACGGCAC
638 GAACCCCAATGCCGCTGGTCAGGTTCTCCGCGATGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * *
13726798 CAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
703 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* * *
13726863 ATGAACTCCGTATGCTTAGACTGGGTGTGACCTCCGTAAGCCTAAGTCAACCCACGAAATGAGCG
768 ATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
* * * * **
13726928 TGCAGGTGCTCAGTCGGCCAGAGGGGTGGGATGTGCAAGTCGGGGATCGACCGG
833 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCCAAGTCGGGGATCGACCGG
* * * *
13726982 GTCCCCCTCTACGTGCTGCCGATCCTGTTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGG
1 GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGG
* * ** *
13727047 AATGAACTCCGTATGCCTAAGCGAACCGATGAAACGAGC-GGCGGGCGTGCACTACACCAGCCAG
66 AATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAG
**
13727111 AGAGACGATATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
131 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
13727176 CCTGCATGCCAAAGCCATTTTTAT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
196 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
13727240 AAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGG
261 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGG
*
13727305 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTT
326 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
13727370 TGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAA
391 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
13727435 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
456 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
13727500 CTTTAAGGGGGTGTGAGTTCTCGAGGTCTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTAC
521 CTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
13727565 CAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCGCCGATCACTGAAACCCCAATGC
586 CAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCC-CCGATCGCCGGAACCCCAATGC
** * **
13727630 CGCAAGTCAGGTTCTCCGGCGCTGCTCCGATGATGGTGCCCCGACGAAAAAAAATATGGCACCAG
650 CGCTGGTCAGGTTCT----C-C-G---CGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
*
13727695 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATG
706 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
*
13727760 AACTCCATATGC
771 AACTCCGTATGC
13727772 GTAAGCCAGC
Statistics
Matches: 3005, Mismatches: 332, Indels: 239
0.84 0.09 0.07
Matches are distributed among these distances:
860 9 0.00
861 89 0.03
862 89 0.03
863 50 0.02
864 4 0.00
866 2 0.00
867 3 0.00
868 59 0.02
869 135 0.04
870 12 0.00
872 19 0.01
873 26 0.01
874 264 0.09
876 1 0.00
877 1 0.00
879 2 0.00
880 1 0.00
881 4 0.00
882 268 0.09
883 143 0.05
884 97 0.03
885 1 0.00
886 4 0.00
887 3 0.00
888 1 0.00
889 5 0.00
890 1 0.00
891 63 0.02
892 80 0.03
893 254 0.08
894 200 0.07
895 27 0.01
896 5 0.00
897 27 0.01
898 126 0.04
899 9 0.00
900 60 0.02
901 1 0.00
902 83 0.03
903 129 0.04
904 72 0.02
905 19 0.01
906 13 0.00
907 34 0.01
908 20 0.01
909 52 0.02
910 94 0.03
911 157 0.05
912 114 0.04
913 68 0.02
914 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGG
ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCC
GCTGGTCAGGTTCTCCGCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCCCAAGTCGGGGATCGACCGG
Found at i:13731443 original size:27 final size:26
Alignment explanation
Indices: 13731402--13731454 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
13731392 TCCAGTCTGA
*
13731402 TCTTAGATTGGGAATAAACTCCGTAT
1 TCTTAGACTGGGAATAAACTCCGTAT
*
13731428 TCTTAGACCTGGGAATGAACTCCGTAT
1 TCTTAGA-CTGGGAATAAACTCCGTAT
13731455 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
TCTTAGACTGGGAATAAACTCCGTAT
Found at i:13732324 original size:26 final size:26
Alignment explanation
Indices: 13732286--13732338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13732276 CCAGTTCGAT
* *
13732286 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13732312 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13732338 C
1 C
13732339 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13733236 original size:26 final size:27
Alignment explanation
Indices: 13733184--13733236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
13733174 CGGTCTGATA
*
13733184 TTAGAACTGGGAATGAACTTCGCATGC
1 TTAGAACTGGGAATGAACTCCGCATGC
*
13733211 TTAG-ACTGGGAATGAACTCCGTATGC
1 TTAGAACTGGGAATGAACTCCGCATGC
13733237 CAAAGTCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (27 bp):
TTAGAACTGGGAATGAACTCCGCATGC
Found at i:13734102 original size:26 final size:26
Alignment explanation
Indices: 13734066--13734118 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13734056 CAGGTTCGAT
13734066 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13734092 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13734118 C
1 C
13734119 CAAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13735009 original size:26 final size:26
Alignment explanation
Indices: 13734970--13735022 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13734960 CTGGTCTGAT
13734970 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
13734996 CTTAGTCTGTGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13735022 C
1 C
13735023 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13735238 original size:901 final size:897
Alignment explanation
Indices: 13731133--13736774 Score: 7039
Period size: 901 Copynumber: 6.3 Consensus size: 897
13731123 CCCCATTTAG
* * *
13731133 GCAAACCTGT-AAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGACGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
13731197 GGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGTC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-C
* * * * ** *
13731262 CCCCCGATTGCCAGAACCCCAATGTCGCCAGTCAGGTTCTTTGTTGATGCTCCGGCGATGGTGCC
129 CCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCC
* * * * *
13731327 CTGACGAAGAAAAATGCGGCACCCAGCACATGCCTGAGCCCAGAATGTGCTACCGCAACCCTCGG
194 CCGACGAAGAAAAATGCGGCA-CCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
* * * *
13731392 TCCAGTCTGATCTTAGATTGGGAATAAACTCCGTATTCTTAGACCTGGGAATGAACTCCGTATGC
258 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-CTGGGAATGAACTCCGTATGC
* * * * * * * * *
13731457 CTAAGTCAACCTACAAAATGAGCGTGCGAGTGCTCAGCTGGCTAGAGGGGCGGGATGTGCAAGTC
322 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * * * *
13731522 TGGGATCGGTCGGGTCCCCCTTTGTGTGCTTTCGATCCTACTACCGCAACCCTCAATCCGGTTTG
387 GGGGATCGAACGGGT-CCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTG
* * *
13731587 ATCTTAGACTGGGAATGAAC-TCTGAATGCCTAAGCCAACCGAC-AAA--A-CGAGCGGACGGGC
451 ATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * **
13731647 GAGCACTACGGCGGCCAGAGAGACGGGATGCGCAAATCGTGGATCGATAGGGTGGTAGGTGGGTT
515 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** ** * *
13731712 TAGGCTTATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGT
580 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGT
* * *
13731777 CCCTTAAGCCTTCACGTGAAGATTCCTGGCAAGACGACTTG-TTTCTATTTTTCACGA-TTTTGA
645 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
13731840 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
710 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
13731905 ATGTAATCCTTGTATTTCTGTTGGCATGCACAAAAAAATT---C--AAAACTCGAAGTGTACAAG
775 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
13731965 ATGTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
840 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
13732023 GCAAACCTGTAAAATTTCAAATGCTCTTTAA-GGGGTATGAGTTCTCGAGGTTTGATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
13732087 TGAGGCCCATAT-AGGGCCAAGTACCAGCA-CCATCACACATCATGTGCGCACACCCCCCGGCCC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * *
13732150 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATTCTCCAGCGATGGTGCCCC
131 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC
* *
13732215 GACGAAGAAAAATGTGGCA--AGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
196 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
* * *
13732278 AGT-TCGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTA
261 GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * **
13732342 AGTCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGTCAAG
325 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
13732407 GATCGAAAGGGTCCACCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCAGTCCGATCTGATC
390 GATCGAACGGGTCC-CCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATC
* * * * * *
13732472 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAAGGAGCAAGCGGGCGGGCAGGC
454 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGC
* * *
13732537 GGGCACTACGTCGTCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTTGGTT
515 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
**
13732602 TAGGCACATCTTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGG
580 TAGGCACATC-TTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGG
* * * * *
13732667 TCCTTTAAGCCTTCAAGTGAAGTTTCATGGCGAGACGAGTCGTTTTCTATTTTTCACGATTTTTA
644 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * **
13732732 AAAC-TTTTACGGTT-TAGGATTTTTTAAAATTTTTTCAGAACGTCTTTT-GCCCCAAACTTGGT
709 AAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
13732794 AGACATGATCCTTGTGTTTTTGTTGGCATCCATAAAAAAATTTCAGCTAAAAACTCGAAGTGTAC
773 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTAC
13732859 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
837 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
13732920 GCAAACCTGCAAAGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTTGGTGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
13732985 GGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGTACATCATATGCGCACA----CC--CCC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* ** * * * **
13733044 CCCGATCCGCCGGAA-CCCAACATCGTCGGTCATGTTCTCCGACGATGCTTTGGCGATGGTGGCC
131 CCCGAT-CGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGT-GCC
* * * ** *
13733108 CCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTGACCCTCGAT
194 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGT
* * *
13733173 CCGGTCTGATATTAGAACTGGGAATGAACTTCGCATGCTTAGACTGGGAATGAACTCCGTATGCC
259 CCGGTCTGATCTTAG-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * *
13733238 AAAGTCACCCCACGAAACGAGTGTACGGGCGCTCAGCCGGCCATAGGGGCGGGATGCGCATGTCG
323 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * *
13733303 GAGATCG-GCTGGATCCCC-CT-C-TG-TGT-G---CTGCT---GCAACCCTCGGTCCGATCTGA
388 GGGATCGAAC-GGGTCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGA
* * * * *
13733356 TCTTAGAATGGGAATCAACTTCGTATGCCTAAGCCAACCGATGAAACGTGCGGGCGGGTGGGCGG
452 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* *
13733421 GCACTACGTCGGCCAGAGAGACGGGATGTGC-AG-CGTGG-TCAATA-GGTGGTAGGTGGGTTTA
517 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
13733482 GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTCAT-TCTTTGCAAATTCATACAATGGTC
582 GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGC-TTGTAAATTCATACAATGGTC
* * * *
13733546 CCTTAAGGCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTAATGATTTTTGGA
646 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-GA
* * * ** ** *
13733611 AACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTTTCCTTAAACCTGGTAG
710 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
13733676 AGGTGATCCTTGTATTTTTTTTTTGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAA
775 ACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
13733740 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
839 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
13733799 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* ** *
13733864 GGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCACATGCGCACACCCCCCGACCT
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-
* * * *
13733929 CCCGGA-CG-CAGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCC
130 CCCCGATCGTC-GGAACCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCC
* * *
13733992 CCGACGAAGAAAAATGCGACACCA--ACATTGCCCGAGCCCATCATGTGCTGTTGCAACCCTCGG
194 CCGACGAAGAAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
* * *
13734055 TCAGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGC
258 TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * ** *
13734119 CAAAGTGAACCCATGAAACGAGCGTGCGGATGCTCAGCTGGCCAGAGGGGCAAGATGCGTAAGCC
322 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * **
13734184 GAGGATCGAAAGGATCCACCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCAGTCTGGTCCA
387 GGGGATCGAACGGGTCC-CCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTG
* * *
13734249 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACAAAACGAGCGGGCGGGAGGACG
451 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG--G
* * * *
13734314 ACCGGGCAGTATCCT-GACCAGAGAGACGAGATGCAG-AAGCCGTGGATCGATAGGGTGGTAGGT
514 --CGGGCACTA-CGTCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
13734377 GGGTTTAGGCATATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
575 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACA
* *
13734442 ATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
640 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
13734507 TTTGAAACATTTTACGGTTCG-GTATTTTTTAAAACTTTTTT-GGAAGGAGTTTTGGCCCCAAAA
705 TTTGAAACTTTTTGCGGTTCGAG-ATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* **
13734570 TTGGTAAACGTGATCCTTGTATTTTTGTTGATATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
768 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
13734635 GTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCA
833 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
13734700 GCAAACATATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
13734765 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATAGCCCCCCGGCC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* ** * * *
13734830 CACCCGATCGTCGGAACCCCAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGGTGATGCTGCC
130 C-CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCC
* * * **
13734895 TCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATCTGCTACCACAACCCTCGGT
194 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGT
* * * *
13734960 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGTCTGTGAATGAACTCTGTATGCCT
259 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
13735025 AAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGG
324 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * ** * *
13735090 GGATCGATCGGGTCTCCCTCTGTGTGTTTTCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGGT
389 GGATCGAACGGGTC-CCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
* *
13735155 CTTAGATTGGGAAATGAACTTCGTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGGCGGGCGG
453 CTTAGACTGGG-AATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* * * *
13735220 GCACTACATCAGCCAGAGAGACGGGAAGTGCAAGCCGTGGATCGATAGGGTGGCT-GGTGGGTTT
517 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG-TAGGTGGGTTT
*
13735284 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
581 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTC
* *
13735349 CCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAA
646 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
13735414 ACTTTTTGCGGTTCGGGATCTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
711 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
13735479 CGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
776 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
** * *
13735544 TTTTGTGACCATTTCCAAAAAGTGTCCCTATTTAAGACACTTTAATGGCTACTGGCA
841 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * *
13735601 GCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGTGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13735666 GGGGGCCAATATAAGGGCCAAGTACCAGTATCCATCGCACATCATGTGCGCACACCCCCCCGGCC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * * * * **
13735731 CACCCGATCGTCGAAACCCCAATGCCGCCGGTCATGTTCTCCGGTGTTGCTCTAGCGATGGTGCC
130 C-CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCC
* ** * ** * * *
13735796 CAGGTGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTGGTGTAA-CC-C--T
194 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGT
**
13735857 -C-G---G----T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTCTATATGCCT
259 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * **
13735900 AAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCATAAGCCGG
324 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
** * * * * * ** * * *
13735965 GGATCGGCCGTGTCCCCCTCTACGTGATGCCAATCCTGCTACCATAGCCCCCAGTCCAGTCTGAT
389 GGATCGAACGGGT-CCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
* **
13736030 CTTAGACTGGGAATGAACTCCGTATGTGTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGG
453 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGCGGG
* * ** * *
13736095 CAGGTGAGCACTTCGTCGGCCAGAGAGGCGGGATGCGCAAGATGTGGATTGATGGGGTGGTAGGT
514 C--G-G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** *
13736160 GGGTTTAGGCACATCTTCATATTTCTATGTGCTGATGCCATTTTCGTGGCTTGTAAATTCATACA
575 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACA
*
13736225 ATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGC-AGAC-ACTCGTTTTCTATTTTTCACGATT
640 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
13736288 TTTAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCCGAAGGATTTTTGGCCCCAAACTT
705 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
13736353 GGTAGACGTGATCCTTGTACTTTTGTTGGCATGGAC-AAAAAATTCAGCTAAAAACTCGAAGTGT
770 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
**
13736417 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTAGAATGGCTACTGGCA
835 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
13736480 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTGGAGGTTTGGTGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13736545 CGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-C
* * * * *
13736610 CCCCCGATCGCCGGAACCCCAATGTTGTCGGTCAGGTTC-CCTAGTGATGCTCCGACGATGGTGC
129 CCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGA-TGATGCTCCGGCGATGGTGC
* * * * *
13736674 CCCGATGAAGAAAAATGTGGCACCACCACATGCCCGAGCCCTGCATGTGCTACTGCAACCCTCGG
193 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
* *
13736739 TCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
258 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
13736775 CCACGAAGTG
Statistics
Matches: 4106, Mismatches: 519, Indels: 240
0.84 0.11 0.05
Matches are distributed among these distances:
874 35 0.01
875 138 0.03
876 5 0.00
877 109 0.03
878 41 0.01
879 523 0.13
880 155 0.04
881 31 0.01
882 453 0.11
883 122 0.03
884 36 0.01
885 43 0.01
886 141 0.03
887 11 0.00
888 25 0.01
889 23 0.01
890 124 0.03
891 160 0.04
892 57 0.01
893 10 0.00
894 116 0.03
895 33 0.01
896 5 0.00
897 152 0.04
898 174 0.04
899 22 0.01
900 64 0.02
901 816 0.20
902 154 0.04
903 73 0.02
904 205 0.05
905 50 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
ATCGAACGGGTCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTT
AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAC
TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
Found at i:13738526 original size:26 final size:26
Alignment explanation
Indices: 13738490--13738542 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13738480 CTGGTCTGAT
13738490 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
13738516 CTTAGATTGGGAGTGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
13738542 C
1 C
13738543 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:13738676 original size:899 final size:896
Alignment explanation
Indices: 13736790--13741169 Score: 5745
Period size: 899 Copynumber: 4.9 Consensus size: 896
13736780 AAGTGAGCGT
* * ** * * *
13736790 GCGGGATGCGCAAGCCGAGGATCGGTCAAGTCCCCCGCTACGTGCTGTTGATCCTGCTGTCGCAA
1 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGCAA
** * * *
13736855 CCCTCGGTC-CAGTCCAATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCATCCGATGAAAC
66 CCCTCGGTCTCA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
** * * **
13736919 AAGCAGGCGGGCGGGTGGACGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCATAAATC
130 --G-A-GCGGGCACG-GG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* ** * *
13736984 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGTGTTCCAAAGCCATTTTTCTGGC
189 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGC
* * *
13737049 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGATTTGTTTT
254 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * *
13737114 CTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTTGCAAGGAGT
319 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
13737179 TTGGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAAGTCAGCT
384 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * *
13737244 AAAAACACGAAGTGTACAAGATTTTCTGACCATTTGAGAAAAGTGTCCCCATTTAAGACACTTTA
449 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
13737309 ATGGCTACTTGCAGTAAACCTGTAAAATGTCAAATGCTCTTTAAAGGCGTGTGAGTTCTCGAGGT
514 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGT
* *
13737374 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAGACATCATGTGCGCA
579 TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* * * * * *
13737439 CA-CCCCCCGACCCCCACGATCGTCGGAACCCTAATACCGTCGATCAGGTTCTCCGGTGATGCAC
644 CACCCCCCCGACCCCC-CGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTC
** * * * *
13737503 CGACGATGGTGCCCTAACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTACTGC
707 CGACGATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
13737568 TGCAACCCTCGGAT-TGGTCCGATCTTAGACTGGGAATGACCTCCGTATCCTTAGATTGGGAATG
772 CGCAACCCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * * *
13737632 AACTTCATATGCCTAAGTCAACCCACCAAATGAGCGTGCGGGCACTCAGTCGGGCAAAGGG
836 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * * * * * *
13737693 GCGGGATTCCCAAGCTGGGGATTGGCCCGATCCCCCTCTACGTGCTACCGATCTTGCTACTGCAA
1 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGCAA
* * * *
13737758 CCCTCGATC-CAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC
66 CCCTCGGTCTCA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
13737822 GAGCGGGCATTCGGGCGGGCACT-CTGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
130 GAGCGGGCA--CGGGCGGGCACTAC-GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
13737886 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTG
192 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTG
* * * * * *
13737951 TAAATTCATACAACGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGAGGATTCATTTTCTT
257 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
13738016 TTTTTCATGATTTTTGAAACTTTTTACGGCTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
322 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * * * *
13738081 AGCCCCGAAA-TTGGTAGACATGATCCTTGTGTTTTTGTTGGCATGTATAAAAAAATTTAGCTAA
387 GGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * *
13738145 AAACGCAAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTAAGACACTTTAAT
451 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
13738210 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAATTTTCGATGTTT
516 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTT
* *
13738275 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCAAACATCATGTGCGCACA
581 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
* * * *
13738340 CCCCCCCGACCCCCCGATCGCCGGAACCTCAATGCCGTCGGTCGGGTTCTCCGACGATGCTTCGA
646 CCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGA
*
13738405 CGATGGTGCCCCGACGAAGAAAAATGCTACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
710 CGATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * *
13738470 AACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAGTGAACT
775 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
*
13738535 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
840 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * *
13738592 GTGGGATGCCCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTTATCCTGCTGCCACAA
1 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGCAA
* * * *
13738657 CCCTTGATCTCATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
66 CCCTCGGTCTCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
* * * * * * *
13738722 AG-TGG-ACGGGAGCGCAATACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGG
131 AGCGGGCACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * **
13738785 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGGCAATGCCATTTTTATGGCTTGTAAA
196 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAA
* ** *
13738850 TTCATACAATGCT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTTC
261 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
13738914 TCATTATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTTCGGTAGGAGTTTTGGCC
326 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
13738979 CCAAACTTGGTAGACATGATCCTTGTATTTTT-TTCGGCATGCACAAAAAAATTCAGCTAAAAAT
391 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAAC
*
13739043 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCT
455 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
13739108 ACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATG
520 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATG
* *
13739173 AGGGAT-AGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGCACACCC
585 AGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
* * **
13739237 CCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTG
649 CCCC-GACCCCCCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACG
*
13739302 ATGGTGCCCCGACGAAGAAAAATG-TAGCACCAGCACATGCCCGAGCCCAACA-----T------
712 ATGGTGCCCCGACGAAGAAAAATGCT-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* **
13739355 A---T--G-C---TCC---CATA-AC--GGTCTG-A-TCCG-AT-CTTAGACTGGGAATGAACTC
776 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
13739401 CGTATGCCTAAGTCAACCCATGAAATGTGCGTGTGGGTGCTCAGCCGGCCAGAGGG
841 CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * * * *
13739457 GCGGGATGCGCAAGCCGGGGACCGACAGGGTGCCCCTCTGCATGCT-ATCGATCCTACTGTCGCA
1 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTGCCGCA
* *
13739521 ACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAA
65 ACCCTCGGTCTC-ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
* * * *
13739585 CGAGCGGGCGGGTGGGCTGGCGGGCACTACGTCGGGCAGAGAGACGGGATGCGAAAGCCGTGGAT
129 CGAGCGGGC------ACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
13739650 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGTGCCAATGCCATTTTTAT
188 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT-T-CCAATGCCATTTTTAT
** *
13739713 GAATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGT
251 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * **
13739778 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATATTTTTTAGAAG
316 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGGAAG
* *
13739843 GAGTTTTGGCCCCGAACTTGGTA-ATTGTGATCCTTGTATGTTTT-TTGGCATGCACAAAAAAAT
380 GAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAAT
*
13739906 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
443 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
13739971 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
508 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
* * *
13740036 CGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACG
573 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
* * * *
13740101 TGCGCACAACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT-C--CG-
638 TGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGGCGA
* * *
13740162 -G-T-----GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGT
702 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
13740220 GCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
767 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
** * * * * *
13740285 TGTGACCTCCGTAAGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCTCAGTCGGCCAGAGGG
832 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * *
13740350 GTGGGATGTGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGTTACCGCAA
1 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGCAA
* ** *
13740415 CCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGATGAAACG
66 CCCTCGGTCTCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
* ** * **
13740480 AGCGGG--CGGGCGTGCACTACACCAGCCAGAGAGACGATATGCGCAAGCCGTGGATCGATAGGG
131 AGCGGGCACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
13740543 TGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCATGCCAAAGCCATTTTTAT-GCTTGTAAA
196 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAA
* *
13740607 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTT
261 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
*
13740672 TCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
326 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
13740737 CCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACT
391 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
13740802 CGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
456 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
13740867 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTCTGATGA
521 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGA
13740932 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
586 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
* * * * * *
13740997 CCGACCCCGCCGATCACTGAAACCCCAATGCCGCAAGTCAGGTTCTCCGGCGCTGCTCCGATGAT
651 CCGACCCC-CCGATCGCCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGGCGATGCTCCGACGAT
* *
13741062 GGTGCCCCGACGAAAAAAAAT-ATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
714 GGTGCCCCGACGAAGAAAAATGCT-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
13741126 CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGC
778 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
13741170 GTAAGCCAGC
Statistics
Matches: 3052, Mismatches: 344, Indels: 170
0.86 0.10 0.05
Matches are distributed among these distances:
863 48 0.02
864 3 0.00
865 177 0.06
866 4 0.00
867 4 0.00
868 3 0.00
869 5 0.00
871 4 0.00
872 3 0.00
873 119 0.04
874 124 0.04
875 254 0.08
876 10 0.00
877 1 0.00
878 1 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 4 0.00
883 269 0.09
884 142 0.05
885 97 0.03
886 3 0.00
887 6 0.00
889 5 0.00
890 3 0.00
891 4 0.00
892 2 0.00
893 192 0.06
894 335 0.11
895 321 0.11
896 1 0.00
897 1 0.00
898 4 0.00
899 773 0.25
900 21 0.01
901 2 0.00
903 103 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGCAA
CCCTCGGTCTCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
AGCGGGCACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
CCGACCCCCCGATCGCCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
TGCCCCGACGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
Found at i:13741902 original size:26 final size:26
Alignment explanation
Indices: 13741851--13741903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13741841 CCGGTCTGAT
*
13741851 CTTAGACTGGGAATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
13741877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
13741903 C
1 C
13741904 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:13743326 original size:895 final size:895
Alignment explanation
Indices: 13741116--13744578 Score: 4608
Period size: 895 Copynumber: 3.9 Consensus size: 895
13741106 CCAGCATGTG
* * * ** * *
13741116 CTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCGTAAGCCAGCC
1 CTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
* * * * * * * *
13741181 AACAAAATGAGCGGGC-GG--GCACTACGCCGGCCAGAAATACGGGATGTACAACCCATGGATCG
66 GACGAAATGAGCGGACGGGCAGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCG
* * * * * *
13741243 GTAGAGTGGTAGGTTGGTTTAGGCACATCTTGATATTTCTGCATGCCAATGCCATTTTTGTAGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATAGCT
* * *
13741308 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATGAGTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
13741373 TATTTTTCACGATTTTTGAAACTTTTTAGGGCTCGAAATTTTTTAAAATTTTTTC---AGGAGTT
261 TATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAAGAGTT
* * *
13741435 TTGG-CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTA
326 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
13741499 AAAACTTGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
391 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
13741564 TGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
456 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
13741629 TGATGAGGGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGC
521 TGATGA----GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * * ***
13741694 ACACAACCCCCCTGGCCCCTCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGAT
582 GCACAACCCCCC-GGCCCCACCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACAAT
* * * * * *
13741759 G-TTCTAGGGATGGTGCCCTGGTGAAGAAAAATGTGACACCAGCACATGCCCGAACCCAGCATGT
646 GCTCCGA-CGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
13741823 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATAAACTCTATATGCTTAGACTGGG
710 GCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * * **
13741888 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGCACTCAGTCGGCCAGAAAG
775 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGGCCAGAGGG
* * * * * * * * *
13741953 GCGGGATGGGCAAGCCGGGGGTAGGTCGGGTCCCTCTCTATGAGCTATCGATCCTG
840 GCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTATGTGCTACCGATCCTA
* *
13742009 CTGCCACAACCCTCGGTTCT-GTCTAATCTTAGACTGGGAATGACCTCCATATGCCTAAGCCAAC
1 CTGCCACAACCCTCAG-TCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * *
13742073 TGACGAATTGAGCGGACGGGCAGGTACTACGCTGGCCAG-GAGACGGGATGCGCAAGTCGTGGAT
65 CGACGAAATGAGCGGACGGGCA-GCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGAT
* * * *
13742137 CGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATGTCTACGTGCCAATGCCATTTTTATGG
129 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATAG
** * *
13742202 CTTGTAAATTCATACAACCGTCCTTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTT
194 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
13742267 TCTATTTTTCATGATTTTTTAAACTTTTTGCGGTT-TGAGATTTTTTAAAATTTTTTCGGAAAGA
259 TCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGA-ATTTTTTAAAATTTTTTCGGAAAGA
* * *
13742331 GTTTTTGCCCCAAACTTGGTTGACGTGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
323 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
13742396 CTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
388 CTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
13742461 TAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAG
453 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
13742526 GTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGTG
518 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
13742591 CACAACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCTGCCGGTAAGGTTCTCCGACGATGC
583 CACAACCCCCCGGCCCCACCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGC
* * * *
13742655 TCCGACGATGGTGCCCCGGTGAAGAAAACTACGGCACCAGCACATGCCCGAGCCCAGCATATGCT
648 TCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCT
*** * * * *
13742720 GTTGCAACCCTTGATCTAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
713 ACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
* * *
13742785 GAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAATCGGCCAGAGGGGCA
778 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCG
* **
13742850 GGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCGGCCGATCCTA
843 GGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTATGTGCTACCGATCCTA
** **
13742903 CTATCGTAACCCTCAGTCTGGT-TAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
1 CTGCCACAACCCTCAGTCTGGTCTA-ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * *
13742967 CGACGAAACGAGCGGACGGGCGAGCATTATGCCGACCAGAGAGACGGAATGCGCAAGCCGTGGAT
65 CGACGAAATGAGCGGACGGGC-AGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGAT
* * *
13743032 CGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATAC
129 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATAG
*
13743097 CTTGTAAATTCATACAATGGTCCATTAAG-CTTGCACGTGAAGTTTCATGGCAAGACGACTCGTT
194 CTTGTAAATTCATACAATGGTCCCTTAAGCCTT-CACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * **
13743161 TTCTGTTTTTCACGATTTTTGAAAATTTTTACAGTTCGGAATTTTTTAAAATTTTTTTGGATGGA
258 TTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAAGA
* *
13743226 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCCTGCACAAAAAAATTCAG
323 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
**
13743291 CTAAAAA-TTCGAAGTGTACAAGATTTTACGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
388 CTAAAAACTT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
13743355 TTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CAG
452 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-G
*
13743419 AGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAATATAAGGGCCAAGTACCAGCACCCATT
516 AGGTTTGATGAGGGATA--GGG----------GGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
13743484 GCACATCATGTCCGCACACCCCCCTCGGCCCCACAGATCGTTGGAACCCTAATGCCGCCAGTCAG
569 GCACATCATGTGCGCACAACCCCC-CGGCCCCACCGATCGTCGGAACCCCAATGCCGCCAGTCAG
* * * *
13743549 GTTCTCCGACAATGCTTCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCC
633 GTTCTCCGACAATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCG
* * * * *
13743614 AGCCAAGCATTTGCTACCGAAACCCCCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
698 AGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* *
13743679 GCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
763 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * * * * * *
13743744 CCGGCTAGAGGGGCGGGTTGCGTAAGCCGGGGATCCACCGGGTCCCCATCTATGTGCTACTGATC
828 TCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTATGTGCTACCGATC
13743809 CTA
893 CTA
* *
13743812 CTGCCACAACCCTCAGTCCGGTCTAATCTTACG-CTGGGAATGAACTCCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCAGTCTGGTCTAATCTTA-GACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * *
13743876 CGACGAAATGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGT
65 CGACGAAATGAGCGGAC----GGGC-AGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGT
* *
13743941 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTT
125 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * *
13744006 ATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTC
190 ATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
13744071 GTTTTCTATTTTTCATGATTTTTGAAAATTTTTGCTGTTCGGGATTTGTTAAAATTTTTTCGAAA
255 GTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAA
**
13744136 AGAGTTTTGGCCCCAAACTTGGTAGACCAGA-CCTTGTATTTTTGTTGGCATGCACAAAAAAATT
320 AGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
13744200 CAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACA
385 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
13744265 CTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
450 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
13744330 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
515 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
13744395 GCACAC-ACCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACAA
580 GCGCACAACCCCCCGGCCCCACCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACAA
* * * * * * *
13744459 TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCCCCAGCACATGCTCGAGCCCAGTATGT
645 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
* ** *
13744524 GCTACCGCAACCTTCGGT-TTGCTCCGATCTTACACTGGGAATGAACTCCATATGC
710 GCTACCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCATATGC
13744579 CTAAGCCAAC
Statistics
Matches: 2247, Mismatches: 280, Indels: 81
0.86 0.11 0.03
Matches are distributed among these distances:
893 70 0.03
894 333 0.15
895 393 0.17
896 244 0.11
897 18 0.01
898 146 0.06
899 14 0.01
900 231 0.10
907 52 0.02
908 7 0.00
909 322 0.14
910 6 0.00
912 169 0.08
913 239 0.11
914 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
GACGAAATGAGCGGACGGGCAGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATAGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAAGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
AACCCCCCGGCCCCACCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGCTCC
GACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACC
GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGGGA
TGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTATGTGCTACCGATCCTA
Found at i:13743456 original size:12 final size:12
Alignment explanation
Indices: 13743438--13743468 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
13743428 GAGGGATAGG
13743438 GGGCCAATATAA
1 GGGCCAATATAA
*
13743450 TGGCCAATATAA
1 GGGCCAATATAA
13743462 GGGCCAA
1 GGGCCAA
13743469 GTACCAGCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.39, C:0.19, G:0.26, T:0.16
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:13743683 original size:26 final size:26
Alignment explanation
Indices: 13743654--13743706 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13743644 CCAGTCCGAT
*
13743654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13743680 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13743706 C
1 C
13743707 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13745308 original size:26 final size:26
Alignment explanation
Indices: 13745268--13745320 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13745258 CTGGTCCGAT
*
13745268 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13745294 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13745320 C
1 C
13745321 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13746938 original size:26 final size:26
Alignment explanation
Indices: 13746887--13746939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13746877 CTGGTCCGAT
*
13746887 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13746913 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13746939 C
1 C
13746940 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.