Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 73 of 131
Found at i:13749404 original size:26 final size:26
Alignment explanation
Indices: 13749375--13749427 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13749365 CCTATCCGAT
13749375 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13749401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13749427 C
1 C
13749428 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13750936 original size:26 final size:26
Alignment explanation
Indices: 13750907--13750959 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13750897 CTGGTCCGAT
*
13750907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
13750933 CTTAGATTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
13750959 C
1 C
13750960 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:13751582 original size:892 final size:887
Alignment explanation
Indices: 13749749--13752737 Score: 3923
Period size: 894 Copynumber: 3.3 Consensus size: 887
13749739 CTTGTAAAAT
* * * * * *
13749749 CTGTAAAATGTCAAATGCTTTTTAAAGTGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
13749814 CAATATTAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCTCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CG
* * * ** * * * * * *
13749879 ATCGTCGGAACCCCAATGCCGTTGCTCAGGTTCTCCAATGATGCTCCGGCAATGGTGCCCC-AGT
130 ATCGCCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-C
* * * *
13749943 GAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGT
194 AAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGT
* * *
13750008 CTGATCCTAGACTGAGAATGAACTCCGTATGCTTAGA-TGGGAATGAACT-TCGTATGCCTAAGT
259 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCT-GTATGCCTAAGT
* * * * * *
13750071 AAACCCACGAAACGAGCGTGCAGGCACTCAACTGCCCGGAGGGGTGGGATGCACAAGTCGGGGAT
323 CAACCCACGAAACGAGCGTGCGGGCGCTCAAC-GACCAGAGGGGTGGGATGCGCAAGTCGGGGAT
** * * * * *
13750136 CGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTACCGTGACCCTCATTCTGGTATGATCTTA
387 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTA
* *
13750201 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAT-GAAAAGAGCGGGCGGGTCGGCACTACG
452 GACTAGGAATGAACTCCGTATGCCTAAGCCAA-CG-TCGAAACGAGTGGGC--G--GGCACTACG
* * * *
13750265 -CTGGTCAGAGAGATGCGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
511 TC-GGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
13750329 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGC
575 CTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
13750394 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCA-CAATTTTCAAAATTTTATG
640 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCATGATTTTTGAAACTTTT-TG
*
13750458 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
704 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * **
13750523 TTGTATTTTTGTTGGCATGCGTAAAAAC-ATTTTGCTAAAAACTCGAAGTGTACAAGATTTTGTG
769 CTGTATTTTTGTTGGCATGC-AAAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
13750587 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
833 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GCTACTGGCAGCAAAC
* *
13750643 CTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
13750708 CAATATAATGGCCAAGTACCAGCACCCTTCGCACATCATGTGCACACACCCCCCCGGCCCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCG
* * * * *
13750773 ATCACCGAAACCCCAATGTCGCCAGTTAGGTTCTTCGACGATGCTCCGACGATGGTACCCCGACA
130 ATCGCCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACA
* * * ***
13750838 AAGAAAAATACGGGACCAGCACATGCTCGAGCCTAGCATGTGCTGTTGCAACCCTCGGTCTGGTC
195 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTC
* *
13750903 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGCAATGAACTCTGTATGCCTAAGTC
260 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG-AATGAACTCTGTATGCCTAAGTC
* * ** * * *
13750967 AACCCATGAAACGAGCGTGCGGGTGCTCTGTCGACTAGAGGGGCGGGATGCGCAAGCCGGGGATC
324 AACCCACGAAACGAGCGTGCGGGCGCTC-AACGACCAGAGGGGTGGGATGCGCAAGTCGGGGATC
* * * * * * *
13751032 GGTCAGGTCTCCGTCTGCATGCTGCCAATCCTACTACCGTAACCCTCAGTCTGATCTGATCTTAG
388 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAG
* *
13751097 ACTAGGAATGAACTCCGTATGCCTAAGCCAATCGTCGGAACGATTGGGCGGGCACTACGTCGGCC
453 ACTAGGAATGAACTCCGTATGCCTAAGCCAA-CGTCGAAACGAGTGGGCGGGCACTACGTCGGCC
* * *
13751162 AGAGAGACGGGATGTACAAGCCATGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATA
517 AGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
13751227 TTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
582 TTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
13751292 TGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCA
647 TGAAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTCATGATTTTTGAAACTTTTTGCGGTTCG
* *
13751357 GGATTTTTTAAAATTTTTTCAGAAGTAGTTTTGGCCTCAAACTTGGTAGACGTGATCCCTGTATT
711 GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATT
*
13751422 TTTGTTGGCATGCAAAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTG
776 TTTGTTGGCATGCAAAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
13751487 GAAAAGGTGTCCCCATTTCAGACACTTTAATGACTACTGACAGTAAAC
841 AAAAAAGTGTCCCCATTTCAGACACTTTAATG-CTACTGGCAGCAAAC
*
13751535 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTTGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
13751600 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGG-CCCCCTA
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
* * * *
13751664 TCGCCGGAACCCCAATATCGCTGGTCAGGTTCTCTGACGATGCTCCCG-CGATGGTGCCCCGACA
131 TCGCCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCT-CCGACGATGGTGCCCCGACA
* *** *
13751728 AAGAAAAATACGGCACAAGCACATGCCCGAGCATGGCATGTGCTGCCGCAACCCTCGGTCT-GTC
195 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTC
**
13751792 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTACACCTAAGTCA
260 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCA
* * * * ** *
13751857 ATCCACGAAACGAGCGTGTGGGCGCTCAACCAGCCAGTGGGGTAAGATGCGCAAGTCGGGGATCA
325 ACCCACGAAACGAGCGTGCGGGCGCTCAACGA-CCAGAGGGGTGGGATGCGCAAGTCGGGGATCG
* * * * * * * *
13751922 GTCGGGTCCCCCTCTGCGTGCCGTCGATCCTGCTGCCGCAATCTTCAGTCCGGTCTAATCTTAGA
389 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGA
* ** * * *
13751987 CTGGGAATGAACTTTGTATGCCTAAGCTAACTGACGAAACGAGTGGGCGGGCGGACGGGCAC-TA
454 CTAGGAATGAACTCCGTATGCCTAAGCCAAC-GTCGAAACGAGTGGGCGGGC--AC---TACGT-
* *
13752051 CCGGCCAGAGAGAC-GGA-GTTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCAAA
512 -CGGCCAGAGAGACGGGATG-T-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
**
13752114 TCTTCATATTTCT--ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTTTTA
574 TCTTCATATTTCTGCAT-T-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
13752177 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTACTTTT-ATGATTTTTGAAACTTT
637 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTCATGATTTTTGAAACTTT
* * *
13752241 TTGCGGTTTGGGATTTTTTAAAATTTTTTCCA-ATGGAGTTTTGGCCCCAAACTTGGTAGGCGTG
701 TTGCGGTTCGGGATTTTTTAAAATTTTTT-CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
13752305 ATCCCTGTATTTTTGTTGGCATGCACAAAAA-ATTTCAGCTAAAAACTCGAAGTGTACAAGATTT
765 ATCCCTGTATTTTTGTTGGCATGCA-AAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
13752369 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAAC
829 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGCTACTGGCAGCAAAC
*
13752429 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCCCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
13752494 CAATATAAAGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACA-CCCCCCGTGCCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCG
* * * * * * *
13752558 ATCGCC-AGAACCCCAATGACGTCGGTCAGGTTCTCCGGCAATGCTCCGATGATTGTGCCCCGAT
130 ATCGCCGA-AACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * ** * * * * * *
13752622 GAAGAAAATTGTGGCATCAGCGCATACCCGAGCCCAGCGTGTGCTATCGCAACCCTCGGTCTAGT
194 AAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGT
* **
13752687 CTAATCTTAGACTGGGAATGAACTCTATATGCTTAGACTAGGAATGAACTC
259 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTC
13752738 ATTATGCTTA
Statistics
Matches: 1836, Mismatches: 225, Indels: 66
0.86 0.11 0.03
Matches are distributed among these distances:
888 3 0.00
889 201 0.11
890 114 0.06
891 177 0.10
892 284 0.15
893 24 0.01
894 550 0.30
895 431 0.23
896 52 0.03
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
TCGCCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACAA
AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAACGACCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGT
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACT
AGGAATGAACTCCGTATGCCTAAGCCAACGTCGAAACGAGTGGGCGGGCACTACGTCGGCCAGAG
AGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCATTTTCTATTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGT
TGGCATGCAAAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGCTACTGGCAGCAAAC
Found at i:13752721 original size:26 final size:26
Alignment explanation
Indices: 13752692--13752763 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
13752682 CTAGTCTAAT
13752692 CTTAGACTGGGAATGAACTC-TATATG
1 CTTAGACTGGGAATGAACTCAT-TATG
*
13752718 CTTAGACTAGGAATGAACTCATTATG
1 CTTAGACTGGGAATGAACTCATTATG
13752744 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
13752764 CGTATGCCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCATTATG
Found at i:13753241 original size:766 final size:761
Alignment explanation
Indices: 13751981--13753476 Score: 2169
Period size: 766 Copynumber: 2.0 Consensus size: 761
13751971 CCGGTCTAAT
** * * * * *
13751981 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCTAACTGACGAAACGAGTGGGCGGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACAAAACGAGTGGGCGGGCGGACGAG
* *
13752046 CACTACCGGCCAGAGAGACGGAGTTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGC
66 CACTACCGGCCAGAGAGACGGAGTGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGATTAGGC
** **
13752111 AAATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTTTT
131 AAATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
13752176 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTACTTTTATGATTTTTGAAACTTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTACTTTTATGATTTTTCAAAC-TC
** * *
13752241 TTGCGGTTTGGGATTTTTTAAAATTTTTTCCAATGGAGTTTTGGCCCCAAACTTGGTAGGCGTGA
260 TTGCGGTTCAGGATTTTTTAAAATTTTTTCCAATGGAGTTTTAGCCCCAAACTTGGTAGACGTGA
*
13752306 TCCCTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
325 TCCCTGTATTTTTGTTGGCACGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
13752371 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
390 TGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
*
13752436 ATCTCAAATGCTCTTTAAGGGGGTGTGAATTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATA
455 ATCTCAAATGCTCTTTAAGAGGGTGTGAATTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
13752501 AAGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCGTGCCCCCCGATCGCCAG
520 AAGGCCAAGTACCAGCACCCATCGCACACCATGTGCGAACACCCCCCG-GCCACCCAATCGCCAG
* * *
13752566 AACCCCAATGACGTCGGTCAGGTTCTCCGGCAATGCTCC-GATGATTGTGCCCCGATGAAGAAAA
584 AACCCCAATGACGTCGGTCAGGTTCTCCGACAATGCTCCAG-CGATGGTGCCCCGATGAAGAAAA
* * * ** ** * * *
13752630 TTGTGGCATCAGCGCATACCCGAGCCCAGCGTGTGCTATCGCAACCCTCGGTCTAGTCTAATCTT
648 ATGTGGCACCAGCACATACCCGAAACCAGAATGTGCTACCACAACCCTCGGTCCAGTCTAATCTT
13752695 AGACTGGGAATGAACTCTATATGCTTAGACTAGGAATGAACTCATTATG
713 AGACTGGGAATGAACTCTATATGCTTAGACTAGGAATGAACTCATTATG
* *
13752744 CTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACAAAACGAGGGATCTGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACAAAACGA--G-T-GGGCGGGCGGA
* * *
13752809 CGAGCACTACTCCGGCTAGAGAGGCGG-GATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGG
62 CGAGCACTA--CCGGCCAGAGAGACGGAG-TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
* * * *
13752873 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATG
124 ATTAGGCAAATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
13752938 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGA-TTTT
189 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTACTTTT-ATGATTTTT
** *
13753002 CAAAC-CTT-CGGTTCAGGATTTTTTAAAATTTTTTTGGAA-GGAGTTTTAGCCCCCAACTTGGT
253 CAAACTCTTGCGGTTCAGGATTTTTTAAAA-TTTTTTCCAATGGAGTTTTAGCCCCAAACTTGGT
*
13753064 AGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAACA-TTCAGCTAAAAACTCGAAGTGTAC
317 AGACGTGATCCCTGTATTTTTGTTGGCACGCACAAAAA-ATTTCAGCTAAAAACTCGAAGTGTAC
13753128 AAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAA
381 AAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAA
* * *
13753193 ACCTGTAAAATCTCAAATGCTCTTTCAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
446 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAATTCCCGAGGTTTGATGAGGGATAGGGG
* * * *
13753258 GCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGAACACCCCCTGGCCACCCA
511 GCCAATATAAAGGCCAAGTACCAGCACCCATCGCACACCATGTGCGAACACCCCCCGGCCACCCA
* * * * *
13753323 ATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCTGGTG
576 ATCGCCAGAACCCCAATGACGTCGGTCAGGTTCTCCGACAATGCTCCAGCGATGGTGCCCCGATG
* * * * *
13753388 AAGAAAAATGTGGCACCAGCACATTCTCGAAACCAGAATGTGCTGCCATAACCCTTGGTCCAGTC
641 AAGAAAAATGTGGCACCAGCACATACCCGAAACCAGAATGTGCTACCACAACCCTCGGTCCAGTC
* *
13753453 TGATCTTAGATTGGGAATGAACTC
706 TAATCTTAGACTGGGAATGAACTC
13753477 CGTATACGAA
Statistics
Matches: 649, Mismatches: 73, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
763 42 0.06
765 134 0.21
766 277 0.43
767 28 0.04
768 1 0.00
769 163 0.25
770 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (761 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACAAAACGAGTGGGCGGGCGGACGAG
CACTACCGGCCAGAGAGACGGAGTGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGATTAGGC
AAATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTACTTTTATGATTTTTCAAACTCT
TGCGGTTCAGGATTTTTTAAAATTTTTTCCAATGGAGTTTTAGCCCCAAACTTGGTAGACGTGAT
CCCTGTATTTTTGTTGGCACGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGAGGGTGTGAATTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
AGGCCAAGTACCAGCACCCATCGCACACCATGTGCGAACACCCCCCGGCCACCCAATCGCCAGAA
CCCCAATGACGTCGGTCAGGTTCTCCGACAATGCTCCAGCGATGGTGCCCCGATGAAGAAAAATG
TGGCACCAGCACATACCCGAAACCAGAATGTGCTACCACAACCCTCGGTCCAGTCTAATCTTAGA
CTGGGAATGAACTCTATATGCTTAGACTAGGAATGAACTCATTATG
Found at i:13757084 original size:866 final size:868
Alignment explanation
Indices: 13754964--13760039 Score: 6406
Period size: 865 Copynumber: 5.8 Consensus size: 868
13754954 CTCTGTTTGG
* * * * *
13754964 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTTAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * *
13755029 GGCTAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCAGTTCCCCCTCTGCGTGCTGCCGATCTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCT
* * ** * * * *
13755094 GCTACCGGAACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
131 ACTGCCACAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* **
13755159 CGACGAAACGAGCGGGCGGGCGGGCACTACGCC-G---GAGAGACGGGATGCACAAGCTATGGAT
196 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
13755220 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* * *
13755285 CTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* **
13755350 TCTATTTTTCACGATTTTTGAAACTTTTTGT-GGTTTGGGATTTTTTTTAATTTTTTCGGAAGGA
391 TCTATTTTTCACGATTTTTGAAACTTTTT-TCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGA
* *
13755414 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAATTTTGTTGGCATGCACAAAAAAAATT-A
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCA
* * *
13755478 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCGTTTTAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
13755543 TTAATGGCTACTGGCAGCAAACCTCTAAATTCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
13755608 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATTGCACATCATGTGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
13755673 GCATACCCCCC-G-GCCCCC-ATCGTCGGAACCCCAATGGCGCCGGTCAGGTTCTCAGGCGATGG
714 GCACACCCCCCAGCCCCCCCGATCGTCGG-ACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGC
** * * **
13755735 TCCAGTGATGGTGCCTTGACGAAAAAAAATGCGGCACCAGCACACGCTTGAGCCCAGCATGTGCT
778 TCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
13755800 GCTGCAACCCTCGGTCCGGTCTGATC
843 GCCGCAACCCTCGGTCTGGTCCGATC
* *
13755826 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCA-CC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
13755890 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCAGGTCCCCCTCTGCATGCTGCCAATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCT
* ** * * * * *
13755955 ACTACCGTAA-CCTTCGGTCTGATCCAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAA
131 ACTGCCACAACCCTT-GGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13756019 CCGACGAAACGAACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
13756084 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTCTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* *
13756149 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAGGACGACTCATT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* *
13756214 TTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTTGAGATGTTTTAAAATATTTTT-GGAAGG
390 TTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTTGAGATTTTTTAAAAT-TTTTTCGGAAGG
* * *
13756278 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCAGAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
13756343 GCTAAAAACTTGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAA-TGTCCCCATTTTAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
13756407 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
13756471 GGATTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTC-CACATCAAGTG
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTG
* * *
13756535 CGCACACCCCCCAGCCCCCCCGATCGTCGGACCCCGATGCTGCCGGTCAGGTTCTCTGGTGATGC
713 CGCACACCCCCCAGCCCCCCCGATCGTCGGACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGC
* ** * *
13756600 TCCAGTGATGGTGCCTCGGTGAAGAAAAATGCGGTACCAGCACATGCCCAAGCCCAGCATGTGCT
778 TCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
13756665 GTCGTAACCCTCGGTTTGGTCAGATC
843 GCCGCAACCCTCGGTCTGGTCCGATC
* *
13756691 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
13756756 GGCCAGAGGGGTGGGATGCTCAAGCTGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCT
* * ** * * *
13756821 GCTGTCGTAACCCTTGGTTCGGTTCGATCTTAGACTAGGAATGAACTACGTATGCCTAAGCCAAC
131 ACTGCCACAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
13756886 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGAAGGGATGCGCAAGCTGTGGAT
196 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
13756951 CTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATTG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* * *
13757016 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCCCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * * *
13757081 TCTATTTTTCACAATTTTTGAAAATTTTTGT-GGTTTGAGATTTTTGAAAATTTTTTCGGAAGGG
391 TCTATTTTTCACGATTTTTGAAACTTTTT-TCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGA
* * *
13757145 GTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
13757210 CT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
13757274 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
585 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
13757339 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATAATGTGCG
650 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * *
13757404 CACACCCCCTGGCCCTCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTC---CGA----
715 CACACCCCCCAGCCCCCCCGATCGTC-GGACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCT
** * *
13757462 -C---GATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCTCGAGCCCAGCATGTGCTA
779 CCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
13757523 CCGTAACCCTCGATCCGGTCCGATC
844 CCGCAACCCTCGGTCTGGTCCGATC
* ** * ** * *
13757548 TTAGACTGAGAATGAACTCAATATGCCTAAGTCAACCCACGAAATGATAGTGCGGGTGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* *** ** *
13757613 GGCCAGAGGGGCGGGATGCACAAAAAGGGGATCGGTTGGGTCCCCCTCTACGTGCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCT
* * * * * * * *
13757678 GCTGCCACAACCCTCGATCCAG-TCTGATCTCAGACTGGGAATAAACCCCATATGCCTAAGCCAA
131 ACTGCCACAACCCTTGGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13757742 CCGACGAAATGAGC--GC--ACGGGCACTACGCCGGTCAGAGAGACGAGATGCGCAAGCCGTGGA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
13757803 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
13757868 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* * * *** ** * *
13757933 TTTTATTTTTTATGATTTGCAAAACTTTTTAAGG-TTCAGGATTTTTTAAAATTTTTTTGGAAGG
390 TTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTTGA-GATTTTTTAAAATTTTTTCGGAAGG
* * *
13757997 AGTTTTGGCCCCAAACATGGTAGACGCGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
13758062 GCTACAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
13758127 TTAGTGGCTACTGGTAGCAAGCCTGTAAAAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
13758192 GGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** * ** * * **
13758257 GCACACTCCCCTAGCACCCCTAATCGTCGAAACCCCAATGCCATCAGTCAGGTTCTCCGATGATG
714 GCACAC-CCCCCAGCCCCCCCGATCGTCG-GACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATG
* * * *
13758322 CTCCGGTG-TGGCGCCCCGACGATGAAAAATGCGGCACCAGTACATGCCCGAGCCCAGCATGTGC
777 CTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
13758386 TGCCGCAACCCTCAGTCTGGTCCGATC
842 TGCCGCAACCCTCGGTCTGGTCCGATC
* *
13758413 ATAGACTGGGAATGAACTCCGTATGATTAGACTAGGAATGAACTCCGTATGCCTAACTCAAACCA
1 -T----T----A-G-A---C-------T-G----GGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * *
13758478 CTAAACGAACGTGTGGCCGCTC-GAACAGCCAGAGGGCCGGGATGCGCAAGCCGGGGATCGACTG
40 CGAAACGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG
* *
13758542 GGTCCCCCTTTACGTGCTGCCAATCCTACTGCCACAA-CCTTCGGTCTGGTTCGATCTTAGACTG
104 GGTCCCCCTCTACGTGCTGCCAATCCTACTGCCACAACCCTT-GGTCCGGTTCGATCTTAGACTG
* * *
13758606 GGAATGAACTCCGTATACCTAAGCCAACCGATGACACGAGCGGGCGGCGGACGGGCGGGCACTAC
168 GGAATGAACTCCGTATGCCTAAGCCAACCGACGA-A--A-CGAGC-G-GG-CGGGCGGGCACTAC
* * *
13758671 GCCGGCCAGAGAGATGGCATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
226 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
***
13758736 CTTCATATTTCTTTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
291 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
13758801 CTTCACGTGGAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTG
356 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTT
* * * * * *
13758866 CAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAA-TTGGTAGACATGATCC
421 CGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
13758930 TTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAAGTCGAAGTGTACAAGATTTTGTGA
486 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
13758995 CCATTCGAAAAAAATGTCCCCATTTCGGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATC
551 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
13759060 TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGG
616 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
13759125 GCCAAGTTCCAGCACCCATCGTACATCATGTGCGCACACCCGCCGGCCCCCCCGATCGTCGGAAC
681 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGG-AC
* * * *
13759190 ACCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGC
745 CCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGC
* * ** *
13759255 GGCACCAGCACATGCCCGAGGCCAACATGTGCTATCACAACCCTCAGTCCGGTCCGATCTTAGAC
810 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G----T---C
*
13759320 TGGGAATGAACTCCTTATGC
859 T--G---G---TCC-GAT-C
* * * * * *
13759340 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACCAGCGTACGAGCACTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
13759405 GCCCAGAGGGGCGAGATGCGCAAGTCGTGGATCGGCCGGGTCCCCCTCTACGTGCTGTCAATCTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCT
** *
13759470 ACTGCCACAACCCTCAGTCCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGA
131 ACTGCCACAACCCTTGGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13759534 CCGACGAAACGA----GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTTGA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
13759595 TCGATAGGGTGGCAGGTGGGTTTAGGCACATGTTCATATTTCTATGTTCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
*
13759660 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
** * * **
13759725 TTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCT-AGATTTTTTAAAATTTTTTCAAAAGG
390 TTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTT-TGAGATTTTTTAAAATTTTTTCGGAAGG
* ** * * * *
13759789 TGTTTTGGCCCCAAACATTTTTAAACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAATTTT
454 AGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
13759854 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
** *
13759919 TTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
** * *
13759984 AATTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTAACAGCACCCGATCGC
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGC
13760040 CGGAACCCCA
Statistics
Matches: 3669, Mismatches: 432, Indels: 195
0.85 0.10 0.05
Matches are distributed among these distances:
852 3 0.00
853 269 0.07
854 189 0.05
855 42 0.01
856 2 0.00
857 244 0.07
858 2 0.00
860 5 0.00
861 145 0.04
862 58 0.02
863 86 0.02
864 73 0.02
865 576 0.16
866 480 0.13
867 103 0.03
868 25 0.01
870 1 0.00
874 1 0.00
875 1 0.00
876 1 0.00
879 1 0.00
886 1 0.00
887 1 0.00
890 239 0.07
891 151 0.04
892 206 0.06
893 4 0.00
894 1 0.00
895 3 0.00
897 2 0.00
898 1 0.00
899 1 0.00
900 54 0.01
901 438 0.12
902 236 0.06
903 2 0.00
905 2 0.00
906 2 0.00
910 1 0.00
913 1 0.00
914 1 0.00
916 1 0.00
917 3 0.00
918 1 0.00
919 1 0.00
922 2 0.00
925 3 0.00
926 3 0.00
927 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (868 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCT
ACTGCCACAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
TCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCAGCCCCCCCGATCGTCGGACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCC
AGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCTGGTCCGATC
Found at i:13758443 original size:26 final size:26
Alignment explanation
Indices: 13758414--13758463 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13758404 GGTCCGATCA
*
13758414 TAGACTGGGAATGAACTCCGTATGAT
1 TAGACTAGGAATGAACTCCGTATGAT
13758440 TAGACTAGGAATGAACTCCGTATG
1 TAGACTAGGAATGAACTCCGTATG
13758464 CCTAACTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGAT
Found at i:13759286 original size:901 final size:888
Alignment explanation
Indices: 13757650--13760039 Score: 3319
Period size: 901 Copynumber: 2.7 Consensus size: 888
13757640 GGGATCGGTT
* * * *
13757650 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTC-GATCCAGTCTGATCTCAGACT
1 GGGTCCCCCTCTACGTGCTGCCAATCCTACTGCCACAACCCTCAG-TCCGGTCTGATCTTAGACT
* * * * * ** *
13757714 GGGAATAAACCCCATATGCCTAAGCCAACCGACGAAATGAGCGCACGGGCACTACGCCGGTCAGA
65 GGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGA
*
13757779 GAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
130 GAGACG-GATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
**
13757844 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
194 CTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * *
13757909 AGTTTCATGGCAAGACGACTCATTTTTTATTTTTTATGATTTGCAAAACTTTTT-AAGGTTCAGG
259 AGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCA-GTTCAGG
*
13757973 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACA-TGGTAGACGCGATCCTTGTATTT
323 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG-CCCAAA-ATTGGTAGACGTGATCCTTGTATTT
* *
13758037 TTGTTGGCGTGCACAAAAAAATTCAGCTACAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGA
386 TTGTTGGCATGCACAAAAAAATTCAGCTA-AAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * * *
13758102 AAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGTAGCAAGCCTGTAAAAGCTCAAATGC
450 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGT
13758167 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTA
515 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTA
* *
13758232 CCAGCACCCATCGCACATCATGTGCGCACACTCCCCTAGCACCCCTAATCGTCGAAACCCCAATG
580 CCAGCACCCATCGCACATCATGTGCGCACACTCCCCTAGCACCCCCAATCGTCGAAACACCAATG
* * * *
13758297 CCATCAGTCAGGTTCTCCGATGATGCTCCGGTGTGGCGCCCCGACGATGAAAAATGCGGCACCAG
645 CCACCAGTCAGGTTCTCCGACGATGCTCCGGCGTGGCGCCCCGACGAAGAAAAATGCGGCACCAG
* * * * *
13758362 TACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCATAGACTGGGAATG
710 CACATGCCCGAGCCCAACATGTGCTACCACAACCCTCAGTCCGGTCCGATCATAGACTGGGAATG
* *
13758427 AACTCCGTATGATTAGACTAGGAATGAACTCCGTATGCCTAACTCAAACCACT-AAACGAACGTG
775 AACTCCGTATGATTAGACTAGGAATGAACTCCGTATGCCTAACTCAAACCA-TGAAACCAACGTA
* * * *
13758491 TG-GCCGCTC-GAACAG-CCAGAGGGCCGGGATGCGCAAGCCGGGGATCGACT
839 CGAG-CACTCAG-AC-GCCCAGAGGGCCGAGATGCGCAAGCCGGGGATCGACC
* * * *
13758541 GGGTCCCCCTTTACGTGCTGCCAATCCTACTGCCACAACCTTCGGTCTGGT-TCGATCTTAGACT
1 GGGTCCCCCTCTACGTGCTGCCAATCCTACTGCCACAACCCTCAGTCCGGTCT-GATCTTAGACT
* *
13758605 GGGAATGAACTCCGTATACCTAAGCCAACCGATGACACGAGCGGGCGGCGGACGGGCGGGCACTA
65 GGGAATGAACTCCGTATACCTAAGCCAACCGACGA-A--A-----C-G-AG-CGGGCGGGCACTA
*
13758670 CGCCGGCCAGAGAGATGGCATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
119 CGCCGGCCAGAGAGACGG-ATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
13758735 TCTTCATATTTCTTTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
183 TCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* **
13758800 CCTTCACGTGGAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTT
248 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTT
* * *
13758865 GCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAATTGGTAGACATGATCC
313 GCAGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAATTGGTAGACGTGATCC
* *
13758930 TTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAAGTCGAAGTGTACAAGATTTTGTGA
378 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA-AACTCGAAGTGTACAAGATTTTGTGA
* * * *
13758995 CCATTCGAAAAAAATGTCCCCATTTCGGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATC
442 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
13759060 TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGG
507 TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGG
* * * * * *
13759125 GCCAAGTTCCAGCACCCATCGTACATCATGTGCGCACAC-CCGCC-GGCCCCCCCGATCGTCGGA
572 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACTCC-CCTAGCACCCCCAATCGTCGAA
* * * * * *
13759188 ACACCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAAT
636 ACACCAATGCCACCAGTCAGGTTCTCCGACGATGCTCCGGCG-TGGCGCCCCGACGAAGAAAAAT
* * *
13759253 GCGGCACCAGCACATGCCCGAGGCCAACATGTGCTATCACAACCCTCAGTCCGGTCCGATCTTAG
700 GCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCACAACCCTCAGTCCGGTCCGATCATAG
* * * * *
13759318 ACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
765 ACTGGGAATGAACTCCGTATGATTAGACTAGGAATGAACTCCGTATGCCTAACTCAAACCATGAA
* * * * * *
13759383 ACCAGCGTACGAGCACTCAGTCGCCCAGAGGGGCGAGATGCGCAAGTCGTGGATCGGCC
830 ACCAACGTACGAGCACTCAGACGCCCAGAGGGCCGAGATGCGCAAGCCGGGGATCGACC
* *
13759442 GGGTCCCCCTCTACGTGCTGTCAATCTTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTG
1 GGGTCCCCCTCTACGTGCTGCCAATCCTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTG
* * *
13759507 GGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCGGGCGGGCACTACGTCGGCCAGAG
66 GGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAG
* * *
13759572 AGACGGGATGCGTAAGCCGTTGATCGATAGGGTGGCAGGTGGGTTTAGGCACATGTTCATATTTC
131 AGAC-GGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
13759637 TATGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
195 TATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
13759702 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCTA-GA
260 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTC-AGGA
*** * ** *
13759766 TTTTTTAAAATTTTTTCAAAAGGTGTTTTGGCCCCAAACATTTTTAAACGTGATCCTTGTATTTT
324 TTTTTTAAAATTTTTTTGGAAGGAGTTTTGG-CCCAAA-ATTGGTAGACGTGATCCTTGTATTTT
* * *
13759831 TGCTGGCATGCACAAAAAATTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
387 TGTTGGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* **
13759896 AAAAGTATCCCCATTTCAGACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAATGCT
451 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-T
**
13759961 T-TTTAAGGGGGTGTGAGTTCTCGAATTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTA
515 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTA
*
13760025 ACAGCACCCGATCGC
580 CCAGCACCC-ATCGC
13760040 CGGAACCCCA
Statistics
Matches: 1326, Mismatches: 142, Indels: 60
0.87 0.09 0.04
Matches are distributed among these distances:
890 230 0.17
891 91 0.07
892 204 0.15
893 9 0.01
894 1 0.00
898 1 0.00
900 56 0.04
901 500 0.38
902 233 0.18
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GGGTCCCCCTCTACGTGCTGCCAATCCTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAG
AGACGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
ATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAGGATT
TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTT
GGCATGCACAAAAAAATTCAGCTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACTCCCCTAGCACCCCCAATCGTCGAAACACCAATGCCACCA
GTCAGGTTCTCCGACGATGCTCCGGCGTGGCGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAACATGTGCTACCACAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCC
GTATGATTAGACTAGGAATGAACTCCGTATGCCTAACTCAAACCATGAAACCAACGTACGAGCAC
TCAGACGCCCAGAGGGCCGAGATGCGCAAGCCGGGGATCGACC
Found at i:13759349 original size:26 final size:26
Alignment explanation
Indices: 13759313--13759365 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13759303 CCGGTCCGAT
*
13759313 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13759339 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13759365 C
1 C
13759366 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13760207 original size:26 final size:26
Alignment explanation
Indices: 13760169--13760221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13760159 CCGGTTTGAT
* *
13760169 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13760195 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13760221 C
1 C
13760222 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13769907 original size:26 final size:26
Alignment explanation
Indices: 13769878--13769928 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13769868 TCGGTCCGAT
*
13769878 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13769904 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13769929 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13770358 original size:882 final size:880
Alignment explanation
Indices: 13768476--13770916 Score: 3454
Period size: 882 Copynumber: 2.7 Consensus size: 880
13768466 CTGCAGTTCA
* * *
13768476 TTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
1 TTCACGTGGAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* * * * * * *
13768541 GGTTCAGGATTTTATAAAATTTTTTTGGAAGGTGTTTTAGCCCCGAACTTGGTAGACATGATCCC
66 -GTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
13768606 TGTATTTTTGTTGGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
130 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * * * *
13768671 CATTTGAAAAAAGTGTACCCATTTCAGACACTTTAGTGGCTACTGGCAGTAAACCTATAAAATCT
195 CATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACTTGTAAAATCT
* * * *
13768736 CAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATGAGGG
260 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * * * * *
13768801 CCAAGTACTAGCACCCAT-GACACATCATGTGTGCACA-GCCCCCGACCCCCTCGATCGTCGAAA
325 CCAAGTACCAGCACCCATCG-CACATCATTTGCGCACACCCCCCCGGCTCCC-CGTTCGTCGGAA
* * *
13768864 CC-CTAATGCCG-CTGGTCAGTTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACAAAGAAAAA
388 CCAC-AATGCCGTC-GGTCAGGTTCTCC-G----G-T-----GA---TGCTCCGACGAAGAAAAA
* * ** * * *
13768927 TGCGACACC-GACACATGCCTGAGCCCAGCATGTGCTGTTGTAACCCTCGATTTGGTCCGATCTT
437 TGTGGCACCAG-CACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTTGGTTCGGTCCGATCTT
* * * * * * * * *
13768991 AGACTAGGAATGAACTCCGTGTGCTTAGAATGGGAATGAGCTCCGTCTGCCTAAGTTAACCCACG
501 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCATCCCACG
* * * ** * *
13769056 AAACGAGTGTGTGGGAGCTCAG-TCGACCAGAGGGGCAGGATGCATAAGTCGAGGATCGATCGGG
566 AAACGAGTGTGTGGGAGCTCAGCT-GGCCAGAGGGGCGGGACGCGCAAGCCG-GGATCGGTCGGG
** * *
13769120 TCTTTCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATTGCAGACTGGGA
629 TCTCCCTCTATGTGCTGCCGATCCTGCGGCCGCAA--CT-A-TCTGATC--ATT-CAGACTGGGA
** * * * *
13769185 ATGAACTCTGTATGCCTAAGCCAACCGACTAAACGAAAGGGCGGGCGGGTGGGTGGGCACTACGT
687 ATGAACTCCATATGCCTAAGCCAACCAACGAAACGAAAGGGCGGGCGGGCGGGCGGGCACTACGT
* *
13769250 CGGTCAGAAAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
752 CGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
13769315 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
817 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
13769379 TTCACGTGGAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
1 TTCACGTGGAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* *
13769444 GATTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCT
66 G-TTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
13769509 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
130 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
13769574 CATTTGAAAAAAGGGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACTTGTAAAATCT
195 CATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACTTGTAAAATCT
*
13769639 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGG
260 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
13769704 CCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCGTCCCCGTTCGTCGGAAC
325 CCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGC-TCCCCGTTCGTCGGAAC
*
13769769 CACAATACCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAAGAAAAATGTGGCACCAGCACATG
389 CACAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAAGAAAAATGTGGCACCAGCACATG
13769834 CCTGAGCCCAGCATGTGCTGCCGTAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTTC
454 CCTGAGCCCAGCATGTGCTGCCGTAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTTC
*
13769899 GTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCATCCCACGAAACGAGTGTGTGGGCGC
519 GTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCATCCCACGAAACGAGTGTGTGGGAGC
* *
13769964 TCAGCTGGCCAGAGGGGCGGGACGCGCAAGCCGGCGATTGGTCGGGTCTCCCTCTACGTGCTGCC
584 TCAGCTGGCCAGAGGGGCGGGACGCGCAAGCCGG-GATCGGTCGGGTCTCCCTCTATGTGCTGCC
*
13770029 -ATAACCCT-CGGTC-CAA-T-TC-GATC-TT-AGACTGGGAATGAACTCCATATGCCTAAGCCA
648 GAT---CCTGCGGCCGCAACTATCTGATCATTCAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * *
13770086 ACCAACGAAACGAGCGGACGGGTGGGCGGGCGGGCGGGTACTACGTCGGCCAGAGAGGCGGGATG
710 ACCAACGAAACGA----AAGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATG
* *
13770151 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAA
771 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
*
13770216 TGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
836 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
13770261 TTCACGTGGAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGC
1 TTCACGTGGAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
*
13770326 AGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
66 -GTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
13770391 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
130 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
13770456 CATTTGAAAAAAATGTCCCCATTTCAGACTCTTTAATAGCTACTGGCAGCAAACTTGTAAAATGT
195 CATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACTTGTAAAATCT
*
13770521 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGG
260 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
13770586 CCAAGTACCAGCACCCATCGCACATC-TTGTGCGCACACCCCCCCGGCATCCCCGTTCGTCGGAA
325 CCAAGTACCAGCACCCATCGCACATCATT-TGCGCACACCCCCCCGGC-TCCCCGTTCGTCGGAA
* * *
13770650 CCACAATGTCGTCAGTCAGGTTCTCCGGTGATGCTCCGACGAAGAAAAATATGGCACCAGCACAT
388 CCACAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAAGAAAAATGTGGCACCAGCACAT
* * *
13770715 GCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAGTGAACTT
453 GCCTGAGCCCAGCATGTGCTGCCGTAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTT
* * *
13770780 CGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCATCCAACGAAACGAGCGTGTGGGTG
518 CGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCATCCCACGAAACGAGTGTGTGGGAG
** *
13770845 CTCAGCCAGCCAGAGGGGTGGGACGCGCAAGCCGGGGATCGGTCGGGTCTCCCTCTATGTGCTGC
583 CTCAGCTGGCCAGAGGGGCGGGACGCGCAAGCC-GGGATCGGTCGGGTCTCCCTCTATGTGCTGC
13770910 CGATCCT
647 CGATCCT
13770917 ACAGTTCATT
Statistics
Matches: 1405, Mismatches: 113, Indels: 63
0.89 0.07 0.04
Matches are distributed among these distances:
878 41 0.03
880 5 0.00
881 2 0.00
882 760 0.54
883 8 0.01
884 2 0.00
887 1 0.00
889 3 0.00
890 197 0.14
891 5 0.00
892 3 0.00
893 2 0.00
898 1 0.00
899 1 0.00
902 1 0.00
903 330 0.23
904 38 0.03
905 5 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (880 bp):
TTCACGTGGAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
GTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCTCCCCGTTCGTCGGAACCA
CAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAAGAAAAATGTGGCACCAGCACATGCC
TGAGCCCAGCATGTGCTGCCGTAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGT
ATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCATCCCACGAAACGAGTGTGTGGGAGCTC
AGCTGGCCAGAGGGGCGGGACGCGCAAGCCGGGATCGGTCGGGTCTCCCTCTATGTGCTGCCGAT
CCTGCGGCCGCAACTATCTGATCATTCAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAAC
GAAACGAAAGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
Found at i:13770796 original size:26 final size:26
Alignment explanation
Indices: 13770760--13770810 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13770750 CCGGTCCGAT
* *
13770760 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13770786 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13770811 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13772719 original size:903 final size:905
Alignment explanation
Indices: 13770925--13778115 Score: 9058
Period size: 903 Copynumber: 8.0 Consensus size: 905
13770915 CTACAGTTCA
* * * *
13770925 TTCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCACGATTTTTTGAAACTTTTTA
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTG
* * * * * *
13770990 CGGTT-CAGGATTTTAT-CAATTTTTTTTAGAAGGTGTTTTGGCCCCGAACTTGGTAGACATGAT
65 CGGTTCCA-GATTTTTTAAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
13771053 CCCTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
128 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
13771118 GACCATTTGAAAAAAGTGTACCCATTTCAGACACTTTAGTAGCTACTGGCAGCAAACCTGTAAAA
193 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
13771183 TCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATGA
258 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
13771248 GGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCTCGATCGTCGGA
323 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGA
* * * * *
13771313 ACCCTAATGCCGCTGGTCAGGTTCTCCGGCAATGCTCCGACGACGGTGCCCCGATGAAGAAAAAT
388 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * *
13771378 GCGACATCGGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAG
453 GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * * *
13771443 ACTGGGAATGAACTCCGTGTGCTTAGAATGGGAATGAGCTCCATCTGCCTAAGTTAACCCATGAA
518 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * * * * *
13771508 ACGAGCGTGCAGGCGCTCATCCGACCAGAGGGG-TAGGATCCGTAAGTCAGGGATCGGC-CGGGT
583 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCGGGT
* * * * * * *
13771571 CCCCCTCTGCGTGCTGCCTATCTTGCTGCCGCAACCTTTGGTCTGGTCTAATCGTGGACTGGGAA
648 CCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAA
* * * * * * *
13771636 TGAACTCTGTATGCCTAAGCCAACCGACTAAACGAAAGGGCA-G-GCAGGTGGGTGGGCACTACG
713 TGAACTCCGTATGCCTAAGCCAACCGACGAAACG--AGCGAACGAGCGGGCGGGCGGGCACTACG
* *
13771699 TCGGCCAGAAAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
776 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
13771764 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
841 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
13771829 TTCACGTGGAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTAC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * ** *
13771894 GGTTCCAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAGCTTTTTAGATGTGATCCT
66 GGTTCCAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
13771959 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGGC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
13772024 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
13772089 CAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * * *
13772154 CCAAGTACAAGCTCCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGCCGAAACC
326 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
* * * * ** ** * *
13772219 CTAATGCCACCAGTCAGGTTCTCTGGTAATGCTCCGGTGATGGTGCCCCAACGAAGAAAAATGTG
391 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * *
13772284 ACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGATCCGATCTTAGACT
456 ACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* *
13772349 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACG
521 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * *
13772414 AGCGTGCGGGCGCCCAACCGGCCAGAGGGGCT-GGATGTGCAAGCCGGGAATAGGCT-GGGTCCC
586 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCGGGTCCC
** * * * * * ** *
13772477 CCTCTGTGTGCTACCAATCTTGCTACCGCAACCCTCAATCTGGTCTGATTTTAGA-TAGGGAATG
651 CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACT-GGGAATG
* *
13772541 AACTCCGTATGCCTAAGCTAACTGACGAAACGAGCGAACGAGCGGGCGGGCGGGCACTACGTCGG
715 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGAGCGGGCGGGCGGGCACTACGTCGG
* * *
13772606 CTAGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCA
780 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
13772671 TATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACC
845 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
13772732 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* ** * *
13772797 GGTTCAAGATTTTTTAAAATTTTTTCAAAAGGCGTTTTGGCCCCAAACTTGGTAGACATGATCCT
66 GGTTCCAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
13772862 TGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAATATTTTGTGAC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
13772927 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13772992 CAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
13773057 CCAAGTTCCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCTCCCGATCGTCGGAACC
326 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
* * * * * ** *
13773122 CCAATACCACCGGTCAGGTTCTACGACGATGCTTCGGTGATGGTGCCTCGACGAAG-AAAATGCG
391 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * *
13773186 ACACCAGCACATGCCCTAACCCAGCATGTGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACT
456 ACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
** * *
13773251 GGGAATGAAGACC-TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
521 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * * *
13773315 AGCATGCGGGCGCTCAGTCGGCCAGA-GGGATGGGATGCGCAAGCTGGGGATTGG-TCGGGTCCC
586 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCGGGTCCC
* * ** * * * * *
13773378 CGTCTGCAAGCTGCCGATCCTACTGCAGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGA
651 CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGA
* *
13773443 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGAGCGGGCGGGGCGGGCGGGCGGGCAT
716 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA---A-----C-GAGCGGGCGGGCGGGCAC
* * * * *
13773508 TACG-CTTGCCAGTGAGATGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTACGC
772 TACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
13773572 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTT
836 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
13773637 AAGCC
901 AAGCC
* * * *
13773642 TTCACGTAAAGTTCCATGGC-A-A-GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * * *
13773704 GGTT-CAGGATATTTCACAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
66 GGTTCCA-GATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
13773768 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGTGA
130 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
13773833 CCATTTGAAAAAAGTGTCTCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATC
195 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
13773898 TCAAATGCTCTTTAA-GGGGTGTAAGTTCTTGAGGTTTGATGAGGGATATGGGGCCAATATAATG
260 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
13773962 GCCGAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGACCCCCCTGATCGTCGGAAC
325 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAC
* * * * **
13774027 CCCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATAT
390 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * * * *
13774092 GGCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGCAACCCACAGTCCGGTCCGATCTTAGAC
455 GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
** * *
13774157 TGGGAATGAACTTTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
520 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * *
13774222 GAGCGTGAGGGCGCTCAGCCGGCCAGAGGGG-TGGGATGCGCAAGCCGGGGATCGAC-CTGGTCC
585 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCGGGTCC
* * * *
13774285 CCCTCTACGTGTTGCCGATCTTGCTGCTGCAACCTTCGGT-TCGGTCCGATCTTAGACTGGGAAT
650 CCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCT-GGTCTGATCTTAGACTGGGAAT
* * * * *
13774349 GCACTCCGTATGCCTAAGCCAA---TCG-ATC-A---AACGA----GTGGGCGGACACTACGTCG
714 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGAGCGGGCGGGCGGGCACTACGTCG
* * *
13774402 GCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTC
779 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
13774467 ATATTTCT--ATGAGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
844 ATATTTCTGCAT--GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * ** *
13774529 TTCACATGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTCC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
** * **
13774594 GGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGTGCCAAACTTGGTAGACGTGATCCT
66 GGTTCCAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * * * *
13774659 TGTATTTTTTTTGGCATGGACAAAAAAATTCAGCCACAAACTAGAAGTGTACAAGATTTTGTGGC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
13774724 CATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13774789 CAAATGCTCTTTAAGGGGGTGTGAGTTCTAC-AGCTTTGATGAGGGATAGGGGGCCAATATAAGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCT-CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
13774853 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGG-CCCCCCGATCATCGAA
325 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCCCGATCGTCGGA
* * * *
13774917 ACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGGAAAAT
388 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA-GAAAA-
*
13774982 ATG-G-CACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAA---------C---CC--TC--
451 ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* *
13775029 AG--T----CTG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
516 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
* * * * *
13775084 AAA-GTAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAATCCAGGGATC-GATCG
581 AAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCG
* * * * *
13775146 GGTCCCCCTCTATGTGCTGCTGATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGG
645 GGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGG
* * ** * ** *
13775211 GAATGAACTCCGTTTGCCTAAGCCAACCGATC-AAACAAGCGGGCGAACGGGTAGGCGGGCATTA
710 GAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGAACGAGCGGGCGGGCGGGCACTA
* * * **
13775275 CATCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTATTCACA
774 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
13775340 TCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAG
839 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
13775405 CC
904 CC
** * * *
13775407 TTCACGTGAAAATTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTTGAAACATTTTGT
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
*** *** *
13775472 GGTTTGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCTTGAAACATGGTAGACGTGATCCT
66 GGTTCCAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
13775537 TATAATTTTGTTGGCATGC-CAAAAAACATTCAGCTAAAAACTTGAAGTGTACATGATTTTGTGA
131 TGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
13775601 CCATTTGAAAAAGGTGTCCCCATTTCAG--------A---C--CTGGCAGCAAACCTGTAAAATC
195 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
13775653 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
260 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
13775718 GCCAAGTACCAGCACACATCGTACATCATGTGTGCACACCCACCCCGGCCCCCCCGATTGTCGGA
325 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCGTCGGA
* * * * * * *
13775783 AACCCAATGTCGTCGGTCAGGTTCTCCAGCAATGCTCCGGCGATGGTGCCCCGACAAAGAAAAAT
388 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * * * *
13775848 TC-AGCACCAGCACATGCCTGAGCCCAGAATGTGCTGTCGCAACCATTGGTTCAGTCCGATCTTA
453 GCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * * *
13775912 GACTGGAAATGAACTCCATATGCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCATGA
517 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * *
13775977 AACGAGCGTGCGAGCGCTCAGCCGGCC-GAAGGGGCGA-GATGCGCAAGCCGGGGATCGG-TCAG
582 AACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCGG
* ** * * *
13776039 ATCCCCCTCTGTGTGCTGCCAATCCTACTGCGGCAACCTTCGGTCTGGTCTGATCTTAGACTGGG
646 GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGG
* ** *
13776104 AATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-AGGCGGGCGAGCGGGCACTAC
711 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGA-GCGGGCGGGCGGGCACTAC
*
13776168 GTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
775 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
13776233 CTTCATATTTCT-AAGTGCCAAAT-CCATTTTTATGGCGTGTAAATTCATACAATGGTCCCTTAA
840 CTTCATATTTCTGCA-TGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
13776296 GCC
903 GCC
* * *
13776299 TTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGGAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * * *
13776364 AGTT-TAGGATTTTTTAAAATTTTTTTGGAAGGA-TTGTTGGCCCCAAACTAGGTAGAGGTGATC
66 GGTTCCA-GATTTTTTAAAATTTTTTTGAAAGGAGTT-TTGGCCCCAAACTTGGTAGACGTGATC
** *
13776427 CTTGTATTTTTGTTGGTGTGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
129 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
13776492 ACCATTTAAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAA-CTCTAAAA
194 ACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
13776556 TCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAA
258 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * * * **
13776621 GGGCCAACTACTAGCACCAATCACACATCATATGCGTACACCCCCCGGCCCCTTCGATCGTCGGA
323 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGA
* * * * * *
13776686 ATCTCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAAT
388 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * *
13776751 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTCGGTCCGGTCCGATCTTAG
453 GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
**
13776816 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAA
518 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* *
13776881 ACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGGC-CGGGT
583 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCGGGT
* * * * * * * *
13776944 CCCCCTTTACGTGTTGCCAATCCTGCTACTGCAACCTTTGGT-TCGATCTAATCTTAGACTGGGA
648 CCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCT-GGTCTGATCTTAGACTGGGA
* * * * * *
13777008 ATGAGCTCCGTATGCCTAAGCCAATCGACGAAACGAGCG---G-GCAGGCGAGCAGGCACTACGC
712 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGAGCGGGCGGGCGGGCACTACGT
* * *
13777069 CGGCCAGAGAGATGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCT
777 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
13777134 TCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATACATACAATGGTCCCTTAAGCC
842 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
13777198 TTCACGTGATGTTTCATGGCAAGATGACCCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGT
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* ** * * *
13777263 GCTTCGGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCTT
66 GGTTCCAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
13777328 TCTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGACTTTGTGAC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
13777393 CATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13777458 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
13777523 CCAAGTACCAGCAACCC-T-GCACATCCGTGTTCGCACGACCCCCTGGCCCCCCCGATCGCCTGA
326 CCAAGTACCAGC-ACCCATCGCACAT-CATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGGA
* * * * ** *
13777586 ACCCCAATGCCACTGGTCAGATTCTCCGACGATGCTCTAACGATGGTGCCCCGATGAAGAAAAAT
388 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * ** * * ** *
13777651 GCGGCACCAGCACAAGCTGGATCCCAGCATGTGCTACCGCAACCCTCAATCCGGTTCGATCTTAG
453 GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * *
13777716 ACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
518 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * * ** * * *
13777781 ACGAGGGTGCAGGCGCTCAACCGGCCAGAGGGG-TAGGATGCACAAGCCTAGAAT-TGATCGGGT
583 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCGGGT
* * * * *
13777844 CCCCCTCTACATGCTGCCGATCCTGTTGCCACAACCTTCGATCTGGTCTGATCTTAGACTGGTAA
648 CCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAA
* * * * * *
13777909 TGAACTCCGTATTCTTAAGCCAACCGATGAAACGAGTG---GA-CGGGCGGACGGGCACTACGCC
713 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGAGCGGGCGGGCGGGCACTACGTC
* *
13777970 GGCCAGAGAGACGAGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGG-TTAGGCACATCTT
778 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
13778034 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCTTTAAGCC
843 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
13778097 TTCACCTGAAGTTTCATGG
1 TTCACGTGAAGTTTCATGG
13778116 TAGACGTGAT
Statistics
Matches: 5473, Mismatches: 680, Indels: 273
0.85 0.11 0.04
Matches are distributed among these distances:
864 2 0.00
865 132 0.02
866 268 0.05
867 4 0.00
868 2 0.00
869 1 0.00
870 6 0.00
871 1 0.00
874 4 0.00
875 1 0.00
876 2 0.00
877 7 0.00
878 318 0.06
880 6 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 2 0.00
887 144 0.03
888 4 0.00
889 2 0.00
890 228 0.04
891 88 0.02
892 582 0.11
893 38 0.01
894 2 0.00
897 1 0.00
898 52 0.01
899 487 0.09
900 399 0.07
901 183 0.03
902 77 0.01
903 1466 0.27
904 62 0.01
905 102 0.02
906 157 0.03
907 304 0.06
908 174 0.03
909 6 0.00
910 155 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (905 bp):
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
GGTTCCAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
ACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGGATGCGCAAGCCGGGGATCGGCTCGGGTCCC
CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGAGCGGGCGGGCGGGCACTACGTCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
Found at i:13774200 original size:26 final size:26
Alignment explanation
Indices: 13774150--13774202 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13774140 CCGGTCCGAT
* **
13774150 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13774176 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13774202 C
1 C
13774203 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13777740 original size:26 final size:26
Alignment explanation
Indices: 13777711--13777763 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13777701 CCGGTTCGAT
13777711 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
13777737 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13777763 C
1 C
13777764 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13778541 original size:26 final size:26
Alignment explanation
Indices: 13778512--13778564 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13778502 CAGGTCCGAT
*
13778512 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13778538 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13778564 C
1 C
13778565 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13779453 original size:26 final size:26
Alignment explanation
Indices: 13779416--13779466 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13779406 CAGTCCGATC
*
13779416 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
13779442 TTAGACTTGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13779467 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:13779993 original size:899 final size:895
Alignment explanation
Indices: 13778113--13785693 Score: 8308
Period size: 881 Copynumber: 8.5 Consensus size: 895
13778103 TGAAGTTTCA
* * *
13778113 TGGTAGACGTGATCTTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
13778178 TAGAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTCATGGCTACT-AGCA
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CA
* * *
13778242 GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTAATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *** *
13778307 TGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGTACATCATGTGCGTACACCCCCCCGACC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCG-CC
* * * * *
13778372 CCCCCGATCATCTGAACCCCAATGCCACCGGTCAGATTCTCCGGTGATGCTCCGATGATGGTGCC
259 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC---GATG-TCCGACGATGGTGCC
* * * *
13778437 CCGACGAAGAAACATACGGCACCAGCACAAT-C-CGGAGCCCAGCATGTGCTACCGTAACCCTCG
320 CCGACGAAGAAAAATGCGGCACCAGCAC-ATGCTC-GAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
13778500 GT-CAGGTCCGATCTTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATG
383 GTCCA-GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** * * **
13778564 CCTAAGTCAACCTACGAAACGAGCGTATGGGCACTCAGCATGCCAGAGGGGCAGGATGCGCAAGC
447 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGGCAGGATGCGCAAGC
** * * * ** * * * *
13778629 CGAAGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGTTGCCGTAACCCTC-AGTCTGGTC
512 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTC-GATC
** * * * **
13778693 CGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACTGATGAAAAAAGCGAATGGGTGGG
576 TAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG---AAA-CGAACGGGCAGG
* * *
13778758 CGGGCGAGCGCTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGT
637 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** *
13778823 GGGTTTAGGCACATCTTCATATTTCTACATTTCGATGCCATTTTTATGGCTTGTAAATTCATACA
702 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
13778888 ATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATT
767 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
13778953 TTTGAAAC-TTTTAGCGGTTCGAGATTTTTTAAAATTTTTTTC-GAAGGACTTTTGGCCCCAAAC
832 TTTAAAACTTTTTA-CGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGATTTTTGGCCCCAAAC
*
13779016 C
895 T
* * *
13779017 TAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAACATTCAGCTAAAAACT-GAAAGT
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGT
* * *
13779081 GTACAATATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGACA
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACA
* *
13779146 GTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
13779211 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTACACATCATGTGCGCACACCCCCCCGCCC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCC
*
13779276 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
260 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--CGATG-TCCGACGATGGTGCCC
*
13779341 CGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
321 CGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
13779406 CAGTCCGATCTTAGACTGGGAATGAACTCTGTATGGTTAGACTTGGAATGAACTCCGTATGCCTA
386 CAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
13779471 AGTCAACCCATGAAACGAGTC-TGCAGGCGCTAAGCCGGCCAGAGGGGCAGGATGCACAAGTCGG
451 AGTCAACCCATGAAACGAG-CGTGCGGGCGCTAAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * * * * * *
13779535 GGATCGACCGGGTCCACCTCTGCCTGCTACCGATCTTGCTGCCGCAACACTCGATTCGATCTGAT
515 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTCGATCTAAT
*
13779600 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAACGGGCAGGCGGGCGGG
580 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCAGGCGGGCGGG
* * * * *
13779665 CACTACGACGGCTAGAGAGACAGGATGCACAAGCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAG
645 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
**
13779730 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
710 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
13779795 TTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
775 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* *
13779860 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTTGCCCCAAACT
840 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACT
* * * *
13779916 TGGTAGTCATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
13779981 TACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTAATGGCTACTGACAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAG
* *
13780046 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGTGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
13780111 TGGGCCAATATAAGGGCCAAGTATCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCC
* * * * *
13780176 CCCGATCGTCGAAACCCCAATGCTGCCAGTCTGGTTCTCCGTTGATGCTCCGACGTTGGTGCCCC
261 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC---GATG-TCCGACGATGGTGCCCC
** * * * *
13780241 GGTGAAGAAAAATGCGGCACCAGCACATACCCAAGCCCAGGATGTGCTGCCGCAA-CC-C--T-C
322 GACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
13780301 --T--GA-C-----C-------G-A-TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
387 AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * * *
13780345 CTCAACCCGTGAAATGAGGGTGCGGGTGCTCAGCCGGCGAAAGGGGCAGGATGCACAAGCCGGGG
452 GTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
** * ** * * * * * * *
13780410 ATCGGCCGGGTCCCCCTCTGCATGCTGTTGATCCTACTGTCGTAACCCTCGGTCCGCTCTGATCT
517 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTCGATCTAATCT
* * ** * * *
13780475 TAGACTGGGAATGAACTCCGTATTCCTAAGCCAA-TCAACGAAACGAGTGGGCAGGCAGGCGAGT
582 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAACGGGCAGGCGGGCGGGC
* * * *
13780539 AATACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTT-GG
646 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
13780603 CACACCTTCATATTTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGCCCCT
711 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
13780668 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTTAAAACT
776 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * * *
13780733 TTTAACAGTTTGGGATTTTTAAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACT
841 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACT
* * *
13780788 TGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
13780853 TACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATCTCAAACACTTTAATGGCTACT-AGCA
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CA
** *
13780917 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGATGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13780982 GGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCCCCCGGCC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCC-GCC
* * * *
13781047 CCCCCGATCGTCGAAACCCCGATGTCGCCAGTCAGG-T-T----T-TCCGACGATGGTGCCCCGA
259 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCCGACGATGGTGCCCCGA
* * * * * **
13781105 CGAAGAAAAATACGGCACCAGCACATGC-CCAGGCCCAGCATGTACTGCTGCAACCCTCTGTCTG
324 CGAAGAAAAATGCGGCACCAGCACATGCTCGA-GCCCAGCATGTGCTGCCGCAACCCTCGGTCCA
* * ** * *
13781169 GTCCCATCTTAGATTGTTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAG
388 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * * **
13781234 TCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGACCAGAGGGGTACGATGCGTC-AGCTAGGG
453 TCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGGCAGGATGCG-CAAGCCGGGG
* * * * *
13781298 ATCGATCGGGTCCCCTTCTGCATGCTGTCGATCCTACTGCTGCAACACTCGATTTGATCTAATCT
517 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTCGATCTAATCT
* * * * *
13781363 GACACTGGGAATGAACTCCATATGCCTAAGCCAACCGATG--A--AAC--G-A-GCGGGCGGGCA
582 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCAGGCGGGCGGGCA
* * *
13781420 CTACGCTGGCTAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
647 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
13781485 ACATCTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
712 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
13781550 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
777 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* * **
13781615 TTTCCGGTTCGGGATTTTTTAAAATTTCTTCGGAAGG-TGTTTTGGCCCTGAACT
842 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT-TTTTGGCCCCAAACT
* *
13781669 TGGTA-AGCGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTGGAAGT
1 TGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
**
13781733 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACA
* *
13781798 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGGGGTTTGATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
** *
13781863 TAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCCGGCC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCC-GCC
* * *
13781928 CCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--TG---G-CGATGGTGCCCCGG
259 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCCGACGATGGTGCCCCGA
* * * * **
13781986 TGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGTTGCCGCACCCCTCGGTCTGG
324 CGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
* *
13782051 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGGCTGGGAATGAACTCTGTATGCCTAAGT
389 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * **
13782116 CAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGGCCAGAGGGGCGGGATGTGGAAGCCAAGGA
454 CAACCCATGAAACGAGCGTGCGGGCGCT-AAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * *** * * *
13782180 TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTATTGCAACACTCG-GTCTAGTTTAATCT
518 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTCGA-TCTAATCT
* ** * * *
13782244 TAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCTGGCGGGCGGGCGGGCA
582 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCAGGCGGGCGGGCA
* * * *
13782309 CTATGCCGGCTAGAGAGACGGGATGTGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGC
647 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*** *
13782374 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTT
712 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
13782439 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAATT
777 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
** * * * *
13782504 TTTACATTTCTGGATATTTTAAATTTTTTTC-GATAGGATTTTTGGCCCCAAACG
842 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA-AGGATTTTTGGCCCCAAACT
* * * *
13782558 TGGTAGACGTGATCCTTGTGTTTTTGTTGGCATTCCCAAAAACATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
** *
13782623 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCCTACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAG
*
13782688 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
13782753 GGAGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATAATGTGCGCACACCCGCCCCGGCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC-CCCC-GCC
* * ** * * *
13782818 CCCCCGATTGTTGGAACCCCAATTTCGCCAGTCAGGTTCTCCG--GT-----GA---TGCTCCGG
259 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCCGACGATGGTGCCCCGA
* * * * * *
13782873 CGAAGAAAAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCTG
324 CGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
* * *
13782938 TCCGATCTTAGACTGGAAATGAAATCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
389 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * *
13783003 CAACCCATTAAACAAGCGTGCGGGTGCTCAGGCAGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
454 CAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * *** * * * *
13783068 CGATCGGGTCCCCCTCTACGTGCTGTCGATCCTACTATGGCAACCCTC-AGTCTGGTCTGATCTT
519 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTC-GATCTAATCTT
* * * * *
13783132 AGATTGGGAATGAATTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCGG
583 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA--------ACGGGC---AGG
* * * * * *
13783197 ACGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGTGTAAGCCGTTGATCGATAGGATGGTAGG
637 -CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** * *
13783262 TGTGCCTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGC--------T--T--
701 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
13783315 -ATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
766 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * * ** *
13783379 TTTCAAAACCTTTTATGGTTTGGGATTTTTTTAAATTTTTTCAGAAGGAGATTTGTCCCCAAACT
831 TTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACT
* ** *
13783444 TGGTAGACATGATCCTCATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-ATAGT
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGT
* *
13783508 GTACAAGATTTTGTGACGATTTG-AAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGACA
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACA
* * *
13783572 GCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCAATGTTTGATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
13783637 AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGTGCACA-CCCCCCGACC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCG-CC
* * * *
13783701 CCCCCGATCGTCGGAACCCCAATGCCGCCAGTCATGTTC-CCTGGTGATACTCTGGCGATGGTGC
259 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GATG-T-C-C-GACGATGGTGC
* * * * *
13783765 CCCGACGAAGAAAAATGTGGCACCAACACATGC-CAGAGCCCAGCATGTGTTGTCACAACCCTCG
319 CCCGACGAAGAAAAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * ** * * *
13783829 GTTCGGTCCGATCTTAGACTGAGAATGAACTCCATATTCTTAGATTGGGAATGAACTCCGCATGC
383 GTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
* *
13783894 CTAAGTCAACCCATGAAACGAGCG-GACGGGAGCTCAA-CCGGCCAGAGGGGC-GGTATGTGCAA
448 CTAAGTCAACCCATGAAACGAGCGTG-CGGGCGCT-AAGCCGGCCAGAGGGGCAGG-ATGCGCAA
* * * * *
13783956 GCCGAGGATCGATAGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGATTC-AT
510 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTCGA-
* * * *
13784020 TCTAATCTTAGACTGGGAATGAATTCCGTATGCCTAATCCAA-TCGACAAAATGAACGGGCGGGC
574 TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAA----CGGGC
* * *
13784084 CGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
634 AGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
13784149 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
699 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13784214 ACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATG
764 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
13784279 ATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAAATTTTTT-GAAAGAAGTTTTGGCCCCAA
829 ATTTTTAAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGATTTTTGGCCCCAA
13784343 ACT
893 ACT
* * * * *
13784346 TGGTAGACGTGATCCTTTTATGTTT-TTGGCATGCACAAAAAAATTCAGGTAAAAACTTGAAGTC
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
13784410 TACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACT-AGCA
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CA
*
13784474 GCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGG-TTGATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13784538 GGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCC-GCC
* * * * * * * *
13784603 CCTCCGATCGCCGGAACCCCAATGCCGTCGATCATTATGGAGGGTGATTTTTTACAATGTTTTCG
259 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTC-------A--G-G---TTCTCCGATG---TCC
* ** * *** * * * *** ** ** ** * *
13784668 GAAAGAGTTTTGGCCCCAAACTTGGTAGACT-CGATTCTTGCATTTTTATTG-GCATCCA-CAAA
308 G-ACGA-TGGT-GCCCC-GACGAAGAAAAATGCGGCACCAGCA-CATGCTCGAGC--CCAGC-AT
*** * * ** * * * ** *** ***
13784730 AAACTTCAGCTAAAAACTCGAAGT---GTACAAGATTTTGTGACCGTTTGAA--AAAAATGTCCC
365 GTGCTGCCGC--AACCCTCG--GTCCAGT-C-CGATCTT-AGA-C-TGGGAATGAACTCTGTATG
* * * * * * * * * *** * **
13784790 CATTTAAGACACTTTAAGGGAGTGTGAGTTCTCGAGGTTTG-ATGAG-GAA--TAGGGGTCCAAT
421 C--TT-AG--AC--T--GGGA--ATGA--ACTC--CGTATGCCTAAGTCAACCCATGAAACGAGC
* ** * ** * ** ** *
13784851 ATAAGGGC-C-AAGTACCAGCACCCATTGCACATCATGTGCGTAAGCCAGGGG-TCGATCGGGTC
471 GTGCGGGCGCTAAG--CCGGC-CAGA-GGGGCAGGA--TGCGCAAGCC-GGGGATCGATCGGGTC
* * * * * * * **
13784913 CCCCTCTACGTGCTGCCAATCCTACTGCCGTAACACTCGGTCCGGTCCAATCTTAGACTCAGAAT
529 CCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTCGATCTAATCTTAGACTGGGAAT
* ** ** * *
13784978 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGTGGGCGGGGACTACGCCGGCCA
594 GAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCAGGCGGGCGGGCACTACGCCGGCCA
* ** *
13785043 GAGAGACGGAATGCGCAAGCCGTGGATCGATAGATTGGTAGGTGGGGTTAGGCACATCTTCATAT
659 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
13785108 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGT
724 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
13785173 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCAG
789 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGG
13785238 GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACT
854 GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACT
*
13785280 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
13785345 TACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAG
* *
13785410 CAAACCTGTAAAATCTCAAATGCTCATTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
13785475 GGGGACAATATAAGGGCCAAGTACCATCACCCATCACACATCATTTGCGCACACCCCCGTCGGCG
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC--CCGCC
*
13785540 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-A-----G-CGATGGTGCCCTGA
259 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCCGACGATGGTGCCCCGA
* * * * * *
13785598 CAAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCTTATGCTGCCACAACCCTCAGTCCAG
324 CGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
* *
13785663 TCTGATTTTAGACTGGGAATGAACT-TGTATG
389 TCCGATCTTAGACTGGGAATGAACTCTGTATG
13785694 GCTAGGCCAA
Statistics
Matches: 5661, Mismatches: 802, Indels: 428
0.82 0.12 0.06
Matches are distributed among these distances:
861 2 0.00
862 60 0.01
863 2 0.00
864 2 0.00
866 1 0.00
869 1 0.00
871 3 0.00
872 404 0.07
873 276 0.05
874 2 0.00
875 4 0.00
876 1 0.00
877 1 0.00
880 66 0.01
881 692 0.12
882 9 0.00
883 43 0.01
884 6 0.00
885 151 0.03
886 192 0.03
887 270 0.05
888 164 0.03
889 570 0.10
890 50 0.01
891 3 0.00
892 1 0.00
893 5 0.00
894 3 0.00
895 5 0.00
896 5 0.00
897 255 0.05
898 16 0.00
899 677 0.12
900 8 0.00
901 119 0.02
902 246 0.04
903 321 0.06
904 243 0.04
905 7 0.00
906 7 0.00
907 6 0.00
908 2 0.00
909 9 0.00
910 10 0.00
911 11 0.00
912 3 0.00
913 2 0.00
914 1 0.00
915 7 0.00
916 4 0.00
917 12 0.00
918 9 0.00
919 6 0.00
920 2 0.00
921 7 0.00
922 5 0.00
923 9 0.00
924 5 0.00
925 6 0.00
926 2 0.00
927 1 0.00
928 2 0.00
930 2 0.00
931 2 0.00
932 4 0.00
933 11 0.00
934 269 0.05
935 145 0.03
936 75 0.01
937 34 0.01
938 102 0.02
939 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCC
CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCCGACGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACACTCGATTCGATCTAATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCAGGCGGGCGGGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTA
CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACT
Found at i:13782086 original size:26 final size:26
Alignment explanation
Indices: 13782057--13782109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13782047 CTGGTCCGAT
13782057 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
13782083 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13782109 C
1 C
13782110 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13782995 original size:26 final size:26
Alignment explanation
Indices: 13782944--13782996 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13782934 CCTGTCCGAT
**
13782944 CTTAGACTGGAAATGAAATCTGTATG
1 CTTAGACTGGAAATGAAATCCATATG
* *
13782970 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAAATCCATATG
13782996 C
1 C
13782997 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAAATCCATATG
Found at i:13783194 original size:12 final size:12
Alignment explanation
Indices: 13783177--13783206 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
13783167 GACGAAACGA
13783177 GCGGGCGGACGG
1 GCGGGCGGACGG
13783189 GCGGGCGGACGG
1 GCGGGCGGACGG
13783201 GCGGGC
1 GCGGGC
13783207 ACTACGTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.27, G:0.67, T:0.00
Consensus pattern (12 bp):
GCGGGCGGACGG
Found at i:13786405 original size:700 final size:701
Alignment explanation
Indices: 13784962--13787805 Score: 3894
Period size: 700 Copynumber: 4.0 Consensus size: 701
13784952 GTCCGGTCCA
** * * *
13784962 ATCTTAGACTCAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGTGGGCG
1 ATCTTAGACTGGGAATGAACT-TGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGCGGGCG
* * * ** *
13785027 GGGACTACGCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGATTGGTAGGTGGGGTT
62 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTT
*
13785092 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCC
127 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
**
13785157 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * *
13785222 ACTTTTT-ACAGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
257 ACTTTTTGTCAGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
*
13785285 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
321 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
13785350 GATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
386 GATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
13785415 CTGTAAAATCTCAAATGCTCATTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGA
451 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
13785480 CAATATAAGGGCCAAGTACCATCACCCATCACACATCATTTGCGCACA-CCCCCGTCGGCGCCCC
516 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCG-CGACCCCCC
* *
13785544 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-AGCGATGGTGCCCTGACAAAGAAAAA
580 CGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGA-CGATGGTGCCC-GACAAAGAAAAA
* *
13785608 TGCAGCACCAGCACATGCTCGAGCCCAGCTTATGCTGCCACAACCCTCAGTCCAGTCTG
643 TGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCAGTCTG
* * *
13785667 ATTTTAGACTGGGAATGAACTTGTATGGCTAGGCCAACCGACGAAACGA-GCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTTGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCGGGCA
* * * *
13785731 CTACGCCGGCCAGAGAGACGGGATGCGCAAGATGTAGATTGATAGGGTGGTAGGTGCGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
13785796 AGATCTTCATATTTCTACGTGCCAGTGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTT
131 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
13785861 AAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * *
13785926 TTTGTGA-TTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGTCCCAAAACTTGGTAGATG
261 TTTGTCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCCAAACTTGGTAGACG
* * * *
13785990 TGATCCTTGTGTTTTTGTTGGCATGCTCAAAACAATTCAGCTAAAAACGCGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
13786055 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAACGGCTACTGGCAGCAAACCTGT
390 TTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
13786120 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
13786185 ATTAGGGCCAAGTACCAGCACCCATCACAC-TCACGTGCGCACACCCCCC-CGATCCCCCCGATC
520 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCGACCCCCCCGATC
** * * *
13786248 ATCGAAACCCCAATGCCACCGGTTAGGTTCTCCGACGATGGTGTCTCGACAAAGAAAAATG-AGG
585 GCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTG-CCCGACAAAGAAAAATGCA-G
**
13786312 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTTAAGTCTG
648 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCAGTCTG
*
13786366 ATCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCGACGAAACGA-GCGAGCGGGCGGGC
1 ATCTTAGACTGGGAATGAACT-TGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCGGGC
* * * * *
13786430 ACTACGTCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTTGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
13786495 CACATCTTCATATTTTTGA-GTGCCAGTGCCATTTTTATGGCCTGTAAATTCGTACAATGGTCCC
130 CACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
13786559 TTAAGCCTTCACGTGAAGTTTCATGTCAAGAGGACTCGTTTTCTAATTTTCAAGATTTTTTAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* *
13786624 TTTTTG-CATTTCGTGATTTTTTAAAATTTTTTCGCAAA-GAGTTTTGGCCCCAAACTTGGTAGA
259 TTTTTGTCAGTTCGAGATTTTTTAAAATTTTTTCG-AAAGGAGTTTTGGCCCCAAACTTGGTAGA
** *
13786687 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAGCAATTCAGCTAAAAACTCGAACTGTACAAGA
323 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
13786752 TTTTGTGACCATTTGAAAAAGGTATCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
388 TTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
13786817 GTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
13786882 ATATAAGGGCCAAGTACCAGCACCCATCGCAC-TCATGTGTGCACACCCCCCTCGACCCCCCCGA
518 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCGACCCCCCCGA
***
13786946 TCGCCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGA-GGTGCCCCGACGAAA-AAAAATGC
583 TCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTG-CCCGAC-AAAGAAAAATGC
* * * *
13787009 AGCGCCAGCACATGCTCGAGCCCAGCATGTGCTG--AGCAACCCTCGGTCCGGTCCG
646 AGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCA-CAACCCTCAGTCCAGTCTG
* * * *
13787064 AGCTTAGACTGCGAATGAACTTCATATGCCTAAGCCAACCGACAAAACGAACGGGCGGGCGGGCT
1 ATCTTAGACTGGGAATGAACTT-GTATGCCTAAGCCAACCGACGAAACG-A--GGCGGGC--G--
* * * *
13787129 GGCGGGCACTACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGG
58 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGG
* *
13787194 GTTTAGGCACATCTCCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
123 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
13787259 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
188 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * **
13787324 TGAAACTTTTTGT-GGTTCGAGATTTTTTAAAATTTTTTTTG-AAGGAGTTTTAGCCCCAAACCA
253 TGAAACTTTTTGTCAGTTCGAGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* * * * **
13787387 GGTAGACATGATCCCTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTACAAACTAAAAGTGT
317 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* ** *
13787452 ACAAGATTTTATGACCATTTGAAAAAAATGTCCTTATTTCAGACACTTTAATGGCTACTTGCAGC
382 ACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
13787517 AAACATGTAAAATGTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
447 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
13787582 TGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCGCTGGCC
512 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGC-GACC
* *
13787647 CCCCCGATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCTGGTGATTCTCTGGCGATGGTGCC
576 CCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGG-T-TC-------TC-C-GACGATGGTG-C
*** ** * * * *
13787712 CCGGTGATTAAAAATGCGGCACCAGCACATGC-CTAAGCCCAGCATGTGCTTCCACAACCCTCGG
629 CCGACAAAGAAAAATGCAGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGCCACAACCCTCAG
*
13787776 TCCGGTCTG
693 TCCAGTCTG
13787785 ATCTTAGACTGGGAATGAACT
1 ATCTTAGACTGGGAATGAACT
13787806 CCGTATGCTT
Statistics
Matches: 1907, Mismatches: 186, Indels: 76
0.88 0.09 0.04
Matches are distributed among these distances:
697 2 0.00
698 58 0.03
699 427 0.22
700 541 0.28
701 239 0.13
702 5 0.00
704 26 0.01
705 21 0.01
706 431 0.23
707 25 0.01
708 37 0.02
709 1 0.00
710 2 0.00
717 2 0.00
718 1 0.00
719 6 0.00
720 45 0.02
721 37 0.02
722 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (701 bp):
ATCTTAGACTGGGAATGAACTTGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTGTCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCGACCCCCCCGATCG
CCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTGCCCGACAAAGAAAAATGCAGCAC
CAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCAGTCTG
Found at i:13787816 original size:26 final size:26
Alignment explanation
Indices: 13787787--13787839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13787777 CCGGTCTGAT
*
13787787 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
13787813 CTTAAACTGGGAATGAACTCCTTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13787839 C
1 C
13787840 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:13789899 original size:26 final size:26
Alignment explanation
Indices: 13789861--13789910 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13789851 CGGTCCGATT
*
13789861 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGAGAATGAACTCTGTATGC
*
13789887 TTAGATTGAGAATGAACTCTGTAT
1 TTAGACTGAGAATGAACTCTGTAT
13789911 CCCAAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCTGTATGC
Found at i:13793622 original size:713 final size:713
Alignment explanation
Indices: 13791657--13794062 Score: 3469
Period size: 713 Copynumber: 3.4 Consensus size: 713
13791647 GCGCACACCC
* *
13791657 TAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
13791722 CACCCATCGTACATCATGTGCGCACACCCCCC-GACCCCCCGATCGTCGGAACCCCAAT---GCC
66 CACCCATCGCACATCATGTGCG-ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGCC
*
13791783 -G-CAGG---TCAGGT--T-CTCCGACGATGGTG-CCTCGGTGAAGAAAAATACGGCACCAGCAC
130 GGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCT-GGTGAAGAAAAATACGGCACCAGCAC
** * * * *
13791839 ATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGATC-CAGTCTGATCTTAGACTGGGAATGAA
194 ATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAA
* * * *
13791903 CTCCGTATGCCTCAGCCAACTGACGAAACGAGCGGGCA--G-GCGGGC---ATTACGTCGGCCAG
258 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGGTGCGGGCGGGACTACGCCGGCCAG
* * *
13791962 AGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
323 AGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATT
* *
13792027 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
387 TCTACATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
13792092 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGTGGTTTTG-
452 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGG-TTCGA
* *
13792156 GATTTTTTAAAATTTTTTCAGAAGGAGGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
516 GATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
13792221 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
581 TTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCG-
***
13792286 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAAAAGGCAAACCTGTAAAATCTCAAATG
645 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATG
13792351 CTCTT
709 CTCTT
* *
13792356 TAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
13792421 CACCCATCGCACATCATGTGCGGACACCCCCTGGCCCCCCCGATCGTCGGAAACCCAATATCGTC
66 CACCCATCGCACATCATGTGC-GACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGCC
** * ** **
13792486 GGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCTGGTGAAGAAAAATGTGGCACCAGCTTA
130 GGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACA
*
13792551 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
195 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
* *
13792616 CCGTATGCCTAAGCCAATCGACGAAACAAGCGGGCGGACGGTTGGGTGGGCGGGCGGGCACTACG
260 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--A-----GGGT--GCGGGCGGG-ACTACG
*
13792681 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGAGTTTAAGCACATC
315 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTG-GTTTAGGCACATC
* * * *
13792746 TTCATATTTCTGCATGCCAAAGTCTTTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCC
379 TTCATATTTCTACATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
13792811 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGA
444 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGA
* * *
13792876 GGTTCGAGATTTTTAAAAACTTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCC
509 GGTTCGAGATTTTTTAAAA-TTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
13792940 TTGTATTTTTGATGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
573 TTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
13793005 CCATTCGAGAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAATATC
638 CCATTCGA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
13793070 TCAAATGCTCTT
702 TCAAATGCTCTT
13793082 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
13793147 CACCCATCGCACATCATGTGTG-CACCCCTCAGCCCCCCCGATCG-C-CAACCCCAATGCCGCCG
66 CACCCATCGCACATCATGTGCGACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGCCG
* *
13793209 GTCGGGTTCTCCGGTGATGCTCCGGCGATGGTG-CCTCGGTGAAGAAAAATACGGCACCAGCACA
131 GTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCT-GGTGAAGAAAAATACGGCACCAGCACA
* ** * *
13793273 TGCCCGAGCCCAGCATGTGCTTTCGTAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACT
195 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
*
13793338 CCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGCGTGCGGGCGGGTACTACGCCGGCCAG
260 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG-GTGCGGGCGGG-ACTACGCCGGCCAG
* *
13793403 AGAGACGGGATGAGGAAGCCGTGGATTGATAGGGTGGTAGGTGGTTTAGGCACATCTTCATATTT
323 AGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGTTTAGGCACATCTTCATATTT
* * * * *
13793468 CTACCTGCCGATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTTATGTGA
388 CTACATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * ** *
13793533 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGA
453 AGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGAGA
*
13793598 TTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTCGACGTGATCCTTGTATTTTT
518 TTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
*
13793663 GTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAA
583 GTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAA
*
13793728 AAGGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
648 AA-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
13793793 TT
712 TT
* * *
13793795 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAGGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
13793860 CACCCATCACACAACATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGTC
66 CACCCATCGCACATCATGTGCG-ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGCC
* * *
13793925 GGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCGGCACTAGCACA
130 GGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACA
* * * * * * *
13793990 TGCTCAAGCCTAGCATGTGCTGCCACAACCCTCGGTCAGGTCCGATCCTAGACTAGGAATGAACT
195 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
*
13794055 CTGTATGC
260 CCGTATGC
13794063 TTAGACAGGG
Statistics
Matches: 1520, Mismatches: 143, Indels: 70
0.88 0.08 0.04
Matches are distributed among these distances:
699 89 0.06
700 25 0.02
703 2 0.00
704 1 0.00
705 4 0.00
708 3 0.00
710 1 0.00
711 124 0.08
712 13 0.01
713 394 0.26
714 64 0.04
715 22 0.01
716 3 0.00
717 129 0.08
718 3 0.00
720 2 0.00
721 3 0.00
722 154 0.10
723 7 0.00
724 19 0.01
725 1 0.00
726 114 0.08
727 337 0.22
728 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (713 bp):
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGCCG
GTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACAT
GCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGGTGCGGGCGGGACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGTTTAGGCACATCTTCATATTTCTA
CATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGAGATTT
TTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
GGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
Found at i:13794960 original size:26 final size:26
Alignment explanation
Indices: 13794931--13794983 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13794921 CCAATCCGAT
13794931 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
*
13794957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
13794983 C
1 C
13794984 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:13795835 original size:26 final size:26
Alignment explanation
Indices: 13795806--13795858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13795796 CTGGTCTGAT
*
13795806 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
13795832 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
13795858 C
1 C
13795859 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:13796741 original size:26 final size:26
Alignment explanation
Indices: 13796705--13796757 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13796695 CTGGTATGAT
*
13796705 CTTAGATTGGGAA-AGAACTCCATATG
1 CTTAGACTGGGAATA-AACTCCATATG
*
13796731 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
13796757 C
1 C
13796758 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:13796909 original size:899 final size:898
Alignment explanation
Indices: 13795172--13799673 Score: 6181
Period size: 899 Copynumber: 5.0 Consensus size: 898
13795162 GAGCCAGCGG
* * *
13795172 GAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
13795237 TTCTGCATGCCAATGTCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * *
13795302 GAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTAA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG
* ** *
13795367 GATTTCTTAAAATTTTTTCGGAAGGCTTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTT
* * *
13795432 TTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTATGTGACCATTTGA
261 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
13795497 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-GC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * * *
13795561 TCTTTAAGGGGGTCTGAGTTCTTGAGGTTTGATGAGGAATAGCGGGTGAATATAAGGGCCAAGTA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCGAATATAAGGGCCAAATA
* **
13795626 CCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATAT
456 CCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * ** *
13795691 CGTCGGTCAGGTTCTCCGGCAATGCTCTAGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAG
521 CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAG
*
13795756 CACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
586 CACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* * * *
13795821 AACTCTGTATGCTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCCCGAAACGAGCGTGC
651 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
** * * *
13795886 AAGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGATCGGGTCCCCCTCTGCGT
716 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
* ** ** *
13795951 GCTGTCGATCCTACTACTGCAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
781 GCTGTCGATCCTGCT-CCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
13796016 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCAGGCACTACGTCGGCCA
845 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCAGGCACTACGTCGGCCA
13796070 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
13796135 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
13796200 GAAGTTTCATGGCAAGACAACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG
*** * * *
13796265 GATTTTTTTTTATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTT
* * * * *
13796330 TTTATAGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCTTTTGA
261 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
13796395 GAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
13796460 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGCGGGTGAATATAAGGGCCAAGTT
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCGAATATAAGGGCCAAATA
13796525 CCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
456 CCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * *
13796590 CCCCGGCCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAG
521 CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAG
* * * * * * *
13796655 CACATGCCCGAGCCTAGCATGTGCTACCGCATCCCTCGATCTGGTATGATCTTAGATTGGGAAAG
586 CACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* * * *
13796720 AACTCCATATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTAC
651 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * **
13796785 GGGCGCTCAGCCAGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCGGTCGTGTCCCCCTCTATGT
716 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
* * * *
13796850 GCTGTCGATCCTGCTATCACAAACCTTGGTCCGGTCCAATCTTAGACCGGGAATGAACTCCGTAT
781 GCTGTCGATCCTGCT-CCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * ** * * *
13796915 GCCTAAGCCAACCGATGAATCGAGCGGATGGGCGGGCGGGCACTAC-ACAGGCCA
845 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCAGGCACTACGTC-GGCCA
* * *
13796969 GAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*** *
13797034 TTCTATGTGCCAATGCCA---TT-T-GCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
13797094 GAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTC-G
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG
* * * * * * *
13797158 ATATTTTTTAAAATTTTTTTGAAAGAAGTTTTGTCCCCAAACTTATTAGACGTGATCCTTATATT
196 -GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATT
13797223 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
260 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
13797288 AAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
325 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * *
13797353 CTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCTAAAT
390 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCGAATATAAGGGCCAAAT
* * *
13797418 ACCAGAACCCATCGCACATCATGTGCGCACAACCCCCCCGGCCCCCCCGATCGACGGAACCCCAA
455 ACCAGCACCCATCGCACATCATGTGCACAC-A-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
* * * * * * * *
13797483 TGTCACCGGTCAGGTTCTCCGACGATGCTTCGACGACGGTACCCCGGTGAAGAGAAATGCGGCAC
518 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCAC
* * ** * * * *
13797548 CAGCACATGCTCGAGCCCAGCACATGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGA
583 CAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
* * * *
13797613 ATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGCGCA
648 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * ** * * *
13797678 TGCGGGTGCGCAGTCGACCAGAGGGGCGGGATGCGCAAGTTGAGAATCGATCGGGTCCCCCTCTA
713 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTG
* * * * * ** *
13797743 TGTGCTGTCGATCCGGGTGCCACAACCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCA
778 CGTGCTGTCGATCCTGCT-CCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* * * *
13797808 TATGCCTAAGCCAACTGACGAAACGAGCTGGCGGGAGGGC-GAGCACTACGCCAGCCA
842 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCAG-GCACTACGTCGGCCA
* * * *
13797865 GAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATTTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
**
13797930 TTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* ** *
13797995 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTGTTGCGGTTCAG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG
* * * *
13798060 GATTTTTTAAAATTTTTTCGCAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTT
* *
13798125 TTTTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGA
261 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
13798190 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
13798255 TCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCGAATATAAGGGCCAAATA
* * * * * *
13798320 CCAGCACCCATCGCGCATCATGTGCACACACCACCCCCGACCCCCTGATCACCGGAACCCCCATG
456 CCAGCACCCATCGCACATCATGTGCACACACC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * * * **
13798385 CCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATAGTTCCCCTACAAAGAAAAATGCGGCACCA
520 CCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCA
* * **
13798450 GCACAAGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAAT
585 GCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
* * * *
13798515 GAACTCCGTATGCTTATACT-AGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTG
650 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** *
13798579 CGGGCACTCAGCCGGCCAGAGGGGCGGGAAGTGCAAGTAGGGGATCGACCGGGTCCCCCTCTGCG
715 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCG
* * * ** * * *
13798644 TGCTGCCAATCCTACTGCTGCAACCCTCGGTTCGGACCAATCTTAGACTGGGAAAGAACTCCGTA
780 TGCTGTCGATCCTGCT-CCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA
* *
13798709 TGCGTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGTC-GCCTA
844 TGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGAGGGCAGGCACTACGTCGGCC-A
*
13798768 GAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
13798833 TTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
** * *
13798898 GAAGTTTCAT-GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCATTTGAGGTTCGG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG
* **
13798962 GATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTAGTAGATATGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTT
* *
13799027 TTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
261 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
** *
13799092 AAAAAGTGTCCTTATTTCTGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
13799157 TCTTTAAGGGGGGGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGGGTAATATAAGGGCCAATT
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCG-AATATAAGGGCCAAAT
* * * * * *
13799221 ACTAGCATCCATCGCACATCATGTGCGCACACCTCCCCCAGCCCCCCCGATCGTCAGAACCCCAA
455 ACCAGCACCCATCGCACATCATGTGCACACA-C-CCCCCGGCCCCCCCGATCGCCGGAACCCCAA
* * * * * * *
13799286 AGCCGCCAGTCAGGTTCTCAGGCGATGCTCCGGCGATGCTGCCCCGACGAAGAAAAATACGGCAC
518 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCAC
13799351 CAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
583 CAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
* * *
13799416 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCGGTATGCCTAAGTCAA-CCACCGAAACGAGT
648 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGC
* * * *** * *
13799480 GTGCGGGCGCTCAACCGGCTAGAGGGGCGGGATGTGTTGGCCAGGGATCG-GCTGGGTCCCCCTC
712 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTC
* * * * *
13799544 TGCGTGCTGTCGATCCTGCCTCCACAACCCCCGATCTGGTCTAATCTTAGACTGAGAATGAACTC
776 TGCGTGCTGTCGATCCTG-CTCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTC
* * *
13799609 CGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGAGGGCAGGCACTACATTGGCCA
840 CGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGAGGGCAGGCACTACGTCGGCCA
13799672 GA
1 GA
13799674 CATTTTAATT
Statistics
Matches: 3161, Mismatches: 411, Indels: 58
0.87 0.11 0.02
Matches are distributed among these distances:
893 1 0.00
894 354 0.11
895 3 0.00
896 424 0.13
897 1 0.00
898 352 0.11
899 692 0.22
900 152 0.05
901 364 0.12
902 312 0.10
903 317 0.10
904 184 0.06
905 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG
GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTT
TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCGAATATAAGGGCCAAATA
CCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAG
CACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
GCTGTCGATCCTGCTCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCAGGCACTACGTCGGCCA
Found at i:13797630 original size:26 final size:26
Alignment explanation
Indices: 13797601--13797653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13797591 CTGGTCCGAT
*
13797601 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
13797627 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
13797653 C
1 C
13797654 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13799440 original size:26 final size:26
Alignment explanation
Indices: 13799404--13799456 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13799394 CTGGTCTGAT
13799404 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13799430 CTTAGATTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13799456 C
1 C
13799457 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13800869 original size:26 final size:26
Alignment explanation
Indices: 13800840--13800890 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13800830 GGTCCGACCA
13800840 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
13800866 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
13800891 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:13801769 original size:26 final size:26
Alignment explanation
Indices: 13801733--13801785 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13801723 CCGGTCCGAT
* *
13801733 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13801759 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13801785 C
1 C
13801786 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:13801934 original size:895 final size:889
Alignment explanation
Indices: 13799964--13806053 Score: 7340
Period size: 899 Copynumber: 6.8 Consensus size: 889
13799954 CCGATCCAAT
* *
13799964 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
13800029 CAGCCAAAGGGGTGGGATACGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** * *
13800094 TGTTGCTGCAACCCTCTCTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTACGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
13800159 ACGATGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGGGAGACGGGATGCACAAGCCG
196 CCGACG-AA--A-CGAGC-GGCGGGCGGGCACGATGCTGGCCAGAGAGACGGGATGCGCAAGCCG
** * * *
13800224 AAGATCGATAGGGTGGTAGGCGGGTTTCGGCTCATCTTCATATTTCTACATGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
13800289 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
13800354 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTTTTTC-G
386 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA-ATTTTTTCAG
* * * * * * *
13800418 AAGGAGTTTTAGCCCTAAAGTTGGTACACGTCATCGTTGTATTTTTGTTGGCATGCA-AAAAAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* *
13800482 GTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAG
515 -TTCAGCT--AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
13800547 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTTAGTT
577 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
13800612 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
642 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
13800677 TGTGCGCACACCTCCCCCAGCCCCCCCGATCATCGGAACCCCAATGTCGCCGGTCAGGTTCTCGG
707 TGTGCGCACA-C-CCCCC-G-GCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * * * *
13800742 GCGATGCT-CGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGTCTGAGCCCAGT
768 ACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
13800806 ATGTGCTACCGGAACCCTCGATCCGGTCCGACCATAGACTGGGAATGAACTCCGTATG
832 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13800864 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
13800929 CGACCA-ATGGGGCGGGATGCGTAAGTCGGGGATCGG-CAGGGTCCCCCTCTACGTGCTGCCAAT
66 CGGCCAGA-GGGGTGGGATGCGTAAGCCGAGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGAT
* * * * * * ** *
13800992 CCTGCTGCTGCAACCCTTGGTTCAGACCAATCTTATACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * *
13801057 AACCGACGAAACGAGCGGAAAGGCGGGCACGATGCTGGCCAGAGAGACGGGATGCGCAAGTCGAG
194 AACCGACGAAACGAGCGG-CGGGCGGGCACGATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
13801122 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGGCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
13801187 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
13801251 TTTTCTATTTTTCACGATTTTCGAAACCTTTTGCGGTTTGGGATTTTTTTTTTTAAAATTTTTTC
388 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGA-----TTTTTTAAAATTTTTTC
* ** * *
13801316 AG-A-GATTTTATGG-CCCAAACTTGGTAAAGAAATGATTCCTTTTTATTTTTGTTGGCATGCAC
448 AGAAGGAGTTT-TGGCCCCAAACTTGGT--AGACGTGA-TCC-TTGTATTTTTTTTGGCATGCAC
**
13801378 AAAAAAATTCAGCT-AAC-CGAAGTGTACAA-A-TTTGTGACCATTCTG-AAAAAGTGTCCTTAT
508 AAAAAAATTCAGCTAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGAAAAAAGTGTCCCCAT
* * *
13801438 TTTAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGGGGAG
572 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTG
*
13801503 TGAGTTTCTCGAGTTTTGATG-GGGATA-GGGGCCAATATAAGGGCCAAGTATCC-GCACCCATC
636 TGAG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATC
* *
13801565 GCA-ATCATGTGCGCACACCTCCCCGGCCCCCGATCGTCCGGAAGCCCCAATGCCTCCGGTCAGG
699 GCACATCATGTGCGCACACC-CCCCGGCCCCCAATCGT-CGGAA-CCCCAATGCCGCCGGTCAGG
* * * *
13801629 TTCTCTGACGATACTCCAGTGATGGTCCCCCGACGAAGAAAAATGA-GGCACCAGCACATGCCCG
761 TTCTCCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAAT-ACGGCACCAGCACATGCCCG
* * * *
13801693 AACCCAGCATGTGCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
824 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
13801758 G
889 G
* * * *
13801759 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * ** * * * *
13801824 CGGCTAGAGGGGCAGGATGCATAAGCCGGGGATCGGTCGGGTACCCAGT-TGCATGCTGCCAATT
66 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGT-CCCCCTCTACGTGCTGCCGATC
* * * * * * * * * *
13801888 CAGCTATCGCAAACCTCGGTCTGGTCTGATGTTAGAGTGAGAATGAACTTCGTGTGGCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
13801953 ACCGACGAAATGAGCAGGCGGGCAGGCGCTACG-T-C-GGCCAGAGAGACGGGATGTACAAGCCG
195 ACCGACGAAACGAGC-GGCGGGC-GG-GC-ACGATGCTGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
13802015 TGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTTCATGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
13802080 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** * * *
13802145 TGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTCAAGATTTTTTC-GA
386 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-
* * * *
13802209 AAGGA-TTTTTGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTCTTGGCATGCAAAAAAAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* *
13802273 TTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGA
515 TTCAGCT--AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
13802338 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTC
578 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
13802403 TAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCGAA-TACCAGCACCCATCGCACATCA
643 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCA
* * * *
13802467 TGTGCGCACAACCCCCTCCGGCCCCCCCAATCGTCAGAATCCCAATGCCGCTGGTCTGGTTCTCC
707 TGTGCGCAC-A-CCCC-CCGG--CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * ** * * * * *
13802532 GACGAGGCTTCGGTGATGGCACCCCGATGAAGAAAAATGCGGCACAAGCACATGCTCGAGCCTAG
767 GACGATGC-TCCGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
**** * * *
13802597 CATGTGCTGTTATAACCTTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
831 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
13802656 CTTAGACTGGGAATGAACTTCGTAGGACTAAGTCAACCCACGAAATGAGCTTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
13802721 AGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGATCGGGT-CCACTTTCACATGTTACCGATC
66 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCT-ACGTGCTGCCGATC
* * *
13802785 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *** *
13802850 ACCAACGAAACGAGAGGCGGGCGGGCAGACGGGCAATACGCCACCCAGAGAGATGGGATGCGCAA
195 ACCGACGAAACGAGCGGCGGGCGGGC--AC--G--AT--GCTGGCCAGAGAGACGGGATGCGCAA
* * * * * *
13802915 GCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTGATATTTTTGCGTGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
13802980 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13803045 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTT
382 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
** * *
13803110 TGGAGGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTTTTGGCATGCA-AAAA
447 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
13803174 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTT
512 AAATTCAGCT--AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
13803239 AGACACTTTAATGGCTACTGGCAGTAAACCCGTAAAATCTCAAATGCTCTTTAATGGTGTGGGAG
575 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
13803304 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGACCAAGTACCAGCACCCACCGCACAT
640 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
13803369 CATGTGCACACACCCCCCCCGACTCCCCTAATCGTCGGAACCTCAAAGCCGCCGGTCAGGTTCTC
705 CATGTGCGCACA--CCCCCCGGC-CCCC-AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** *
13803434 CGACGATGCTCCGACGATGGTGCCTCGGGGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCA
766 CGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * * * *
13803499 GCATGTGCGGCCGCAACCCACGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATG
830 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13803559 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * * *
13803624 ATGCCAGAGGGGTGGGATGCGTAAATCGAGGATCGGTCGAGTCCCCTTCTATGTGCTGCCGATCC
66 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * * * *
13803689 TACTACGGCAACCCTCGATCC-ATCCGATCCTAGACTGAGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
13803753 CTGATGAAATGTGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCG
196 CCGACGAAACGAGC-GGCGGGCGGGCACG-A-T--GCTGGCCAGAGAGACGGGATGCGCAAGCCG
***
13803818 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* * * *
13803883 TATGGCTTGTAAATTCAAACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCAAGGTAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
13803948 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTCGGA
386 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGA
* *
13804013 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTTTTGGCATGCACAAAACAAT
451 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * * *
13804078 TCAGCCAAAAACTCGAAGTGTATAAGATTTTGAGACCATTTGAAAAAAGTATCCCCATTTCAGAC
516 TCAG-C-TAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
13804143 ACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCT
579 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
13804208 TGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
644 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * **
13804273 TGCGCACACCCCCCTTGGCTCCTCCAATCTTCGGAACCCCATTGTCGTCGATCAGGTTCTCCGGT
709 TGCGCACACCCCCC--GGC-CC-CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* **
13804338 GATGCTCCGACGATGGTGCCTCGGGGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA-CAT
770 GATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* ** * *
13804402 GTGCTGCCGTAACCCTCGGTCTAGTCCGATCTTAGATTGGGAATGAACTCCATATG
834 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
13804458 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCATGCAGGCGCTCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
13804523 CGACC-GAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCACCCTCTACGTGCTGCAGATCT
66 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * **
13804587 TGCTGCCACAACCCTCTTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** *
13804652 TTGACGAAACGAGCAGGCGGGCGGGCGGGCGA-GCACAATATCGGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACGAGC-GGCGGGCGGGC--ACGATG--C----T-GGCCAGAGAGACGGGATGCGCA
* * * *
13804716 AGCCGTGGATCGATAAGGTAGTAGGTGGCTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
13804781 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
13804846 CGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCAGTTCGAGATTTTTT-AAATTTTT
381 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
** * * *
13804910 TTGGAAGGAGTTTAGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAA
446 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
13804975 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
511 AAAATTCAGCT--AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13805040 CAGACAATTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
574 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * **
13805104 GTTCTCGAGGTTTGATGAGGGATAGGAGGCCCATATAAGGGCCAAGTACCAGTACCCATCATACA
639 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * **
13805169 TCATGTGCGCACACCCGCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT-C
704 TCATGTGCGCACACCCCCCGG--CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
13805233 --CGA-------CGATGGTGCCCCGACAAAGAAAAATATGACACCAACACATGCCCGAGCCCAGC
767 GACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
13805289 ATCTACTGTCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
832 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
13805347 CATAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTATGAAACGAGCGTACGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
13805412 CGGCCAGAAGGGCGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
13805477 TGCTACCGTAACCCTCGG-CTTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTACCGCAACCCTCGGTC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
13805541 ACCGACGAAATGAGCGGGCAGACGGGTGGGTGGGCACTACG-TCGACCAGAGAGACGGGATGCGC
195 ACCGACG-AA--A-C--G-AG-C-GGCGGGCGGGCACGATGCT-GGCCAGAGAGACGGGATGCGC
* * * *
13805605 AAGCCGTGGATCGATATGCTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATATGCCAATGC
250 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * * *
13805670 CATTTTTATGGCTTGTCAATTCAAACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAG
315 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
13805735 ACGACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAATTT
380 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
13805800 TTCGGAAGGAGTTTTGGTCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
445 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
13805865 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
510 AAAAATTCAGCT--AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13805930 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCATATGCTCTCTAAGGGGGTGCG
573 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13805995 AGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCA
638 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
13806054 ATGTCATAAC
Statistics
Matches: 4491, Mismatches: 587, Indels: 232
0.85 0.11 0.04
Matches are distributed among these distances:
888 77 0.02
889 111 0.02
890 306 0.07
891 201 0.04
892 112 0.02
893 50 0.01
894 128 0.03
895 489 0.11
896 325 0.07
897 338 0.08
898 134 0.03
899 493 0.11
900 471 0.10
901 94 0.02
902 254 0.06
903 461 0.10
904 399 0.09
905 48 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGGGCACGATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
TAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCG
ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13802659 original size:26 final size:26
Alignment explanation
Indices: 13802630--13802679 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13802620 CCGATCCAAT
13802630 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13802656 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13802680 GGACTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13803562 original size:26 final size:26
Alignment explanation
Indices: 13803533--13803585 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13803523 CTGGTCCAAT
*
13803533 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13803559 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13803585 C
1 C
13803586 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13804020 original size:899 final size:898
Alignment explanation
Indices: 13799964--13806053 Score: 7570
Period size: 900 Copynumber: 6.8 Consensus size: 898
13799954 CCGATCCAAT
* * * *
13799964 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-TCGG
* * * * *
13800029 CAGCCAAAGGGGTGGGATACGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
65 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** * *
13800094 TGTTGCTGCAACCCTCTCTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTACGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGATCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13800159 ACGATGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGGGAGACGGGATGCACAAGCCG
194 CCGACGAAATGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
** * * *
13800224 AAGATCGATAGGGTGGTAGGCGGGTTTCGGCTCATCTTCATATTTCTACATGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
13800289 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
13800354 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTTTTTC-G
389 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA-ATTTTTTCGG
* * * * * *
13800418 AAGGAGTTTTAGCCCTAAAGTTGGTACACGTCATCGTTGTATTTTTGTTGGCATGCA-AAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
* *
13800482 GTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAG
517 -TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
13800547 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTTAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
13800612 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
13800677 TGTGCGCACACCTCCCCCAGCCCCCCCGATCATCGGAACCCCAATGTCGCCGGTCAGGTTCTCGG
711 TGTGCGCACACCCCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * * * *
13800742 GCGATGCT-CGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGTCTGAGCCCAGT
776 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
13800806 ATGTGCTACCGGAACCCTCGATCCGGTCCGACCATAGACTGGGAATGAACTCCGTATG
841 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13800864 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-G
* * * * * *
13800928 CCGACCA-ATGGGGCGGGATGCGTAAGTCGGGGATCGG-CAGGGTCCCCCTCTACGTGCTGCCAA
64 GCGGCCAGA-GGGGTGGGATGCGTAAGCCGAGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGA
* * * * * ** *
13800991 TCCTGCTGCTGCAACCCTTGGTTCAGACCAATCTTATACTGGGAATGAACTCCGTATGCCTAAGC
127 TCCTGCTGCCGCAACCC-TCGATCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *** * *
13801056 CAACCGACGAAACGAGCGGAAAGGCGGGCACG-A-T--GCTGGCCAGAGAGACGGGATGCGCAAG
191 CAACCGACGAAATGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
13801117 TCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGGCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
13801182 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
13801246 ACTCGTTTTCTATTTTTCACGATTTTCGAAACCTTTTGCGGTTTGGGATTTTTTTTTTTAAAATT
386 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGA-----TTTTTTAAAATT
* * ** *
13801311 TTTTCAG-A-GATTTTATGG-CCCAAACTTGGTAAAGAAATGATTCCTTTTTATTTTTGTTGGCA
446 TTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGT--AGACGTGA-TCC-TTGTATTTTT-TTGGCA
13801373 TGCACAAAAAAATTCAGCT---AAC-CGAAGTGTACAA-A-TTTGTGACCATTCTG-AAAAAGTG
505 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGAAAAAAGTG
** * *
13801431 TCCTTATTTTAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAAATCTCAAATGCTCTTTAA
569 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAA
* *
13801496 GGGGGAGTGAGTTTCTCGAGTTTTGATG-GGGATA-GGGGCCAATATAAGGGCCAAGTATCC-GC
633 GGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGC
* *
13801558 ACCCATCGCA-ATCATGTGCGCACA-CCTCCCCGG--CCCCCGATCGTCCGGAAGCCCCAATGCC
696 ACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCAATCGT-CGGAA-CCCCAATGCC
* * * * *
13801619 TCCGGTCAGGTTCTCTGACGATACTCC-AGTGATGGTCCCCCGACGAAGAAAAATGA-GGCACCA
759 GCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAAT-ACGGCACCA
* * *
13801682 GCACATGCCCGAACCCAGCATGTGCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAAT
822 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
13801747 GAACTCTGTATG
887 GAACTCCGTATG
* * * * *
13801759 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-GG
* ** * * ** * * * *
13801824 CGGCTAGAGGGGCAGGATGCATAAGCCGGGGATCGGTCGGGTACCCAGT-TGCATGCTGCCAATT
65 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGT-CCCCCTCTACGTGCTGCCGATC
* ** * * * * * * * * *
13801888 CAGCTATCGCAAACCTCGGTCTGGTCTGATGTTAGAGTGAGAATGAACTTCGTGTGGCTAAGCCA
129 CTGCTGCCGCAACCCTCGATC-CGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * **
13801953 ACCGACGAAATGA----GCAGGCGGGCAGGCGCTACGTCGGCCAGAGAGACGGGATGTACAAGCC
193 ACCGACGAAATGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
13802014 GTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTTCATGCCAATGCCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
13802079 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** * * * *
13802144 TTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTCAAGATTTTTTCGA
388 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
13802209 AAGGA-TTTTTGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTCTTGGCATGCAAAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
* *
13802273 TTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
13802338 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTC
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
13802403 TAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCGAA-TACCAGCACCCATCGCACATCA
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCA
* * * * *
13802467 TGTGCGCACAACCCCCTCCGGCCCCCCCAATCGTCAGAATCCCAATGCCGCTGGTCTGGTTCTCC
711 TGTGCGCAC-ACCCCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** ** * * * * *
13802532 GACGAGGCTTCGGTGATGGCACCCCGATGAAGAAAAATGCGGCACAAGCACATGCTCGAGCCTAG
775 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
**** * * *
13802597 CATGTGCTGTTATAACCTTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
840 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
13802656 CTTAGACTGGGAATGAACT-TCGTAGGACTAAGTCAACCCACGAAATGAGCTTACGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-G
** * * * * * * * * *
13802720 TAGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGATCGGGT-CCACTTTCACATGTTACCGAT
64 GCGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCT-ACGTGCTGCCGAT
*
13802784 CCTGCTGCCGCAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACC
128 CCTGCTGCCGCAACCCTCGA-TCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * ** *
13802848 CAACCAACGAAACGAG-AGGCGGGCGGGCAGACGGGCAATACGCCACCCAGAGAGATGGGATGCG
191 CAACCGACGAAATGAGCGGGCGGGCGGGC--A--GGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * * * *
13802912 CAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTGATATTTTTGCGTGCCAATG
252 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
13802977 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
317 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
13803042 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTT
382 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* *
13803107 TTTTGGAGGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTTTTGGCATGCA-A
447 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACA
* *
13803171 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
511 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * * *
13803236 TTTAGACACTTTAATGGCTACTGGCAGTAAACCCGTAAAATCTCAAATGCTCTTTAATGGTGTGG
576 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
13803301 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGACCAAGTACCAGCACCCACCGCA
641 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
13803366 CATCATGTGCACACACCCCCCCCGACTCCCCTAATCGTCGGAACCTCAAAGCCGCCGGTCAGGTT
706 CATCATGTGCGCACACCCCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* ** *
13803431 CTCCGACGATGCTCCGACGATGGTGCCTCGGGGAAGAAAAATACGGCACCAGCACATGCTCGAGC
771 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * * *
13803496 CCAGCATGTGCGGCCGCAACCCACGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATG
836 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
13803559 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCGGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGC
* ** * * *
13803624 ATGCCAGAGGGGTGGGATGCGTAAATCGAGGATCGGTCGAGTCCCCTTCTATGTGCTGCCGATCC
66 -GGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * * * *
13803689 TACTACGGCAACCCTCGATCCATCCGATCCTAGACTGAGAATGAACTCTGTATGCCTAAGCCAAC
130 TGCTGCCGCAACCCTCGATCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
13803754 TGATGAAATGTGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGT
195 CGACGAAATGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
***
13803819 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * * *
13803884 ATGGCTTGTAAATTCAAACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCAAGGTAAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
13803949 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTCGGAA
390 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* *
13804014 GGAGTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTTTTGGCATGCACAAAACAATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATT
* * * *
13804079 CAGCCAAAAACTCGAAGTGTATAAGATTTTGAGACCATTTGAAAAAAGTATCCCCATTTCAGACA
519 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
13804144 CTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTT
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
13804209 GAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
649 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * * * * * **
13804274 GCGCACACCCCCCTTGGCTCCTCCAATCTTCGGAACCCCATTGTCGTCGATCAGGTTCTCCGGTG
714 GCGCACACCCCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* **
13804339 ATGCTCCGACGATGGTGCCTCGGGGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA-CATG
779 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * *
13804403 TGCTGCCGTAACCCTCGGTCTAGTCCGATCTTAGATTGGGAATGAACTCCATATG
844 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13804458 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACAAAATGAGCATGCAGGCGCTCGG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGG
* * *
13804522 CCGACC-GAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCACCCTCTACGTGCTGCAGATC
65 -CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * **
13804586 TTGCTGCCACAACCCTCTTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGATCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * ***
13804651 ATTGACGAAACGAGCAGGCGGGCGGGCGGGC-GAGCACAATATCGGCCAGAGAGACGGGATGCGC
193 ACCGACGAAA--TG-A-GCGGGCGGGCGGGCAG-GCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
13804715 AAGCCGTGGATCGATAAGGTAGTAGGTGGCTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
253 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
13804780 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAG
318 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
13804845 ACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCAGTTCGAGATTTTTT-AAATTTT
383 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
13804909 TTTGGAAGGAGTTTAGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAA
448 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
* *
13804974 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
512 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13805039 TCAGACAATTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
577 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * **
13805103 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCCATATAAGGGCCAAGTACCAGTACCCATCATAC
642 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
13805168 ATCATGTGCGCACA--CCCGCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGG---
707 ATCATGTGCGCACACCCCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
13805228 T-------T-CTCCGACGATGGTGCCCCGACAAAGAAAAATATGACACCAACACATGCCCGAGCC
772 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * *
13805285 CAGCATCTACTGTCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
837 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
13805347 CATAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTATGAAACGAGCGTACGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-GG
* * * *
13805412 CGGCCAGAAGGGCGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
65 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
13805477 TGCTACCGTAACCCTCG-GCTTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCGCAACCCTCGATC-CG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * *
13805541 ACCGACGAAATGAGCGGGCAGACGGGTGGGTGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
193 ACCGACGAAATGAGC-GG--G-CGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
13805606 AGCCGTGGATCGATATGCTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATATGCCAATGCC
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * * *
13805671 ATTTTTATGGCTTGTCAATTCAAACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
13805736 CGACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTT
384 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
13805801 TCGGAAGGAGTTTTGGTCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
449 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAA
*
13805866 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
513 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
13805931 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCATATGCTCTCTAAGGGGGTGCGA
578 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
13805996 GTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCA
643 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
13806054 ATGTCATAAC
Statistics
Matches: 4492, Mismatches: 599, Indels: 206
0.85 0.11 0.04
Matches are distributed among these distances:
886 2 0.00
887 3 0.00
888 84 0.02
889 112 0.02
890 321 0.07
891 210 0.05
892 112 0.02
893 48 0.01
894 131 0.03
895 474 0.11
896 291 0.06
897 328 0.07
898 112 0.02
899 483 0.11
900 498 0.11
901 86 0.02
902 253 0.06
903 491 0.11
904 405 0.09
905 43 0.01
906 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGC
GGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCT
GCTGCCGCAACCCTCGATCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAATGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13805352 original size:26 final size:26
Alignment explanation
Indices: 13805323--13805373 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13805313 AGTCCGATCT
*
13805323 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTAGGAATGAACTCCGTATGCA
*
13805349 TAGACTAGGAATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
13805374 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCA
Found at i:13806485 original size:6 final size:6
Alignment explanation
Indices: 13806474--13806502 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
13806464 TAATTGAGGA
13806474 AAAATC AAAATC AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAAT
13806503 AGAAAGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:13806875 original size:60 final size:59
Alignment explanation
Indices: 13806537--13806875 Score: 467
Period size: 59 Copynumber: 5.7 Consensus size: 59
13806527 TCTTGTGTAG
*
13806537 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCATTTTTTTG-AAATTCATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATCATTTTTTTGAAAATTTATTTTTAA
* *
13806595 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATCCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCATTTTTTTGAAAATTTATTTTTAA
* *
13806654 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAT-A-TTTTTTGGAAATTTCGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCATTTTTTTGAAAATTT--ATTTTTAA
* * *
13806713 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCTTTTTTTTTAAAAATTTACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAAT-C-ATTTTTTTGAAAATTTATTTTTAA
*
13806774 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCA-TTTTTTGCAAAATTTGATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCATTTTTTTG-AAAATTT-ATTTTTAA
*
13806834 GGGAAATTGATACTTTCAACTTTTCCCTAAAAAT-ATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCATTTTTTT
13806876 TTGAATTTTT
Statistics
Matches: 250, Mismatches: 18, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
57 13 0.05
58 48 0.19
59 93 0.37
60 46 0.18
61 36 0.14
62 2 0.01
63 12 0.05
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCATTTTTTTGAAAATTTATTTTTAA
Found at i:13806927 original size:9 final size:9
Alignment explanation
Indices: 13806908--13806983 Score: 70
Period size: 10 Copynumber: 8.4 Consensus size: 9
13806898 AAGAAAATAG
13806908 AATAAATAAA
1 AATAAA-AAA
13806918 AATAAAAAA
1 AATAAAAAA
13806927 AAT--AAAA
1 AATAAAAAA
13806934 AATAAAGAAA
1 AATAAA-AAA
*
13806944 AGT-AAAAA
1 AATAAAAAA
13806952 AAT-AAAAA
1 AATAAAAAA
13806960 AATAAAATAA
1 AATAAAA-AA
*
13806970 AGATAAAAAG
1 A-ATAAAAAA
13806980 AATA
1 AATA
13806984 TTAAATAAAC
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
7 7 0.12
8 13 0.23
9 15 0.26
10 16 0.28
11 6 0.11
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.14
Consensus pattern (9 bp):
AATAAAAAA
Found at i:13806944 original size:26 final size:25
Alignment explanation
Indices: 13806908--13806992 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 25
13806898 AAGAAAATAG
13806908 AATAAATAAAAATAAAAAAAATAAAA
1 AATAAA-AAAAATAAAAAAAATAAAA
*
13806934 AATAAAGAAAAGT-AAAAAAATAAAAA
1 AATAAA-AAAAATAAAAAAAAT-AAAA
* **
13806960 AATAAAATAAAGATAAAAAGAATATTA
1 AATAAAA-AAA-ATAAAAAAAATAAAA
13806987 AATAAA
1 AATAAA
13806993 CCTAATCTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
25 9 0.18
26 24 0.49
27 9 0.18
28 7 0.14
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (25 bp):
AATAAAAAAAATAAAAAAAATAAAA
Found at i:13806980 original size:8 final size:8
Alignment explanation
Indices: 13806896--13806966 Score: 74
Period size: 8 Copynumber: 8.6 Consensus size: 8
13806886 TATTTTTATT
13806896 TAAAGAAAA
1 TAAA-AAAA
*
13806905 TAGAATAAA
1 TA-AAAAAA
*
13806914 TAAAAATA
1 TAAAAAAA
13806922 -AAAAAAA
1 TAAAAAAA
13806929 T-AAAAAA
1 TAAAAAAA
13806936 TAAAGAAAA
1 TAAA-AAAA
13806945 GTAAAAAAA
1 -TAAAAAAA
13806954 TAAAAAAA
1 TAAAAAAA
13806962 TAAAA
1 TAAAA
13806967 TAAAGATAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
7 13 0.25
8 19 0.36
9 15 0.28
10 6 0.11
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (8 bp):
TAAAAAAA
Found at i:13807583 original size:11 final size:11
Alignment explanation
Indices: 13807567--13807597 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
13807557 AATTCCCAGA
13807567 AAAAAATTTTG
1 AAAAAATTTTG
13807578 AAAAAATTTTG
1 AAAAAATTTTG
13807589 AAAAAATTT
1 AAAAAATTT
13807598 CTGATGATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (11 bp):
AAAAAATTTTG
Found at i:13807973 original size:32 final size:32
Alignment explanation
Indices: 13807884--13807993 Score: 109
Period size: 32 Copynumber: 3.3 Consensus size: 32
13807874 TAAAAATCAA
*
13807884 ATAAATATAAAAAAATAATAGATA-ATTAGAACAG
1 ATAAATA-AAAAAAATAATAGATATATTAG--TAG
13807918 ATAAATCGAAAAAAAA-AATAGATATATTA-TAGG
1 ATAAAT--AAAAAAAATAATAGATATATTAGTA-G
* * *
13807951 ATAAATAAAAAAAATAACAGATATATAATTAG
1 ATAAATAAAAAAAATAATAGATATATTAGTAG
13807983 ATAAATAAAAA
1 ATAAATAAAAA
13807994 TATAAAAATA
Statistics
Matches: 67, Mismatches: 3, Indels: 14
0.80 0.04 0.17
Matches are distributed among these distances:
31 8 0.12
32 24 0.36
33 9 0.13
34 14 0.21
35 11 0.16
36 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.24
Consensus pattern (32 bp):
ATAAATAAAAAAAATAATAGATATATTAGTAG
Found at i:13808012 original size:17 final size:16
Alignment explanation
Indices: 13807990--13808052 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 16
13807980 TAGATAAATA
13807990 AAAATATAAAAATAAAT
1 AAAATATAAAAAT-AAT
13808007 AAAATATAAAAATAAT
1 AAAATATAAAAATAAT
13808023 AATAATAATAATATAATAAT
1 AA-AAT-ATAA-A-AATAAT
13808043 AAATATATAA
1 AAA-ATATAA
13808053 CTATATAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
16 5 0.12
17 16 0.39
18 4 0.10
19 6 0.15
20 10 0.24
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATATAAAAATAAT
Found at i:13808027 original size:37 final size:41
Alignment explanation
Indices: 13807951--13808066 Score: 116
Period size: 40 Copynumber: 2.9 Consensus size: 41
13807941 ATATTATAGG
*
13807951 ATAA-ATAAAAA-AAATAACAGATATATAATTAGAT-A-AATA
1 ATAATATAAAAATAAATAACA-ATATATAAATA-ATAATAATA
* *
13807990 AAAATATAAAAATAAATAA-AATATAAAAATAATAATAATA
1 ATAATATAAAAATAAATAACAATATATAAATAATAATAATA
* *
13808030 ATAATATAATAATAAATATATAACTATATAAATAATA
1 ATAATATAAAAATAAATA-ACAA-TATATAAATAATA
13808067 TACATATAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
38 2 0.03
39 13 0.20
40 28 0.44
41 7 0.11
42 2 0.03
43 12 0.19
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (41 bp):
ATAATATAAAAATAAATAACAATATATAAATAATAATAATA
Found at i:13808036 original size:23 final size:23
Alignment explanation
Indices: 13807985--13808045 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
13807975 ATAATTAGAT
13807985 AAATA-AAAATATAAAAATAAATA
1 AAATATAAAA-ATAAAAATAAATA
*
13808008 AAATATAAAAATAATAAT-AATA
1 AAATATAAAAATAAAAATAAATA
*
13808030 ATAATATAATAATAAA
1 A-AATATAAAAATAAA
13808046 TATATAACTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 5 0.15
23 24 0.73
24 4 0.12
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (23 bp):
AAATATAAAAATAAAAATAAATA
Found at i:13808063 original size:23 final size:21
Alignment explanation
Indices: 13807971--13808141 Score: 92
Period size: 20 Copynumber: 8.0 Consensus size: 21
13807961 AAAATAACAG
*
13807971 ATATATAATTAGATAAATA-AA
1 ATATATAAATA-ATAAATATAA
13807992 A-ATATAAA-AATAAATA-AA
1 ATATATAAATAATAAATATAA
*
13808010 ATATAAAAATAAT-AATA-ATA
1 ATATATAAATAATAAATATA-A
13808030 ATA-ATATAATAATAAATATATA
1 ATATATA-AATAATAAATATA-A
13808052 ACTATATAAATAATATACATATAA
1 A-TATATAAATAATA-A-ATATAA
* *
13808076 ATCTATTCTAAATAAATAAATATAG
1 A--TA-TATAAAT-AATAAATATAA
* * * *
13808101 ATATACATAT-ATTAATACATA
1 ATATATAAATAATAAATATA-A
13808122 ATA-AT-AATAATAAATATAA
1 ATATATAAATAATAAATATAA
13808141 A
1 A
13808142 AATACATAAA
Statistics
Matches: 120, Mismatches: 15, Indels: 32
0.72 0.09 0.19
Matches are distributed among these distances:
18 10 0.08
19 18 0.15
20 34 0.28
21 8 0.07
22 8 0.07
23 11 0.09
24 6 0.05
25 14 0.12
26 7 0.06
27 4 0.03
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.33
Consensus pattern (21 bp):
ATATATAAATAATAAATATAA
Found at i:13808067 original size:31 final size:28
Alignment explanation
Indices: 13807986--13808139 Score: 101
Period size: 31 Copynumber: 5.5 Consensus size: 28
13807976 TAATTAGATA
* *
13807986 AATAA-AAATATA-AAAATAAATAAAAT
1 AATAATAAATATATATAATAAATAATAT
13808012 -ATAA-AAATA-ATAATAAT-AATAATAT
1 AATAATAAATATAT-ATAATAAATAATAT
13808037 AATAATAAATATATAACTATATAAATAATAT
1 AATAATAAATATAT-A-TA-ATAAATAATAT
* *
13808068 ACAT-ATAAATCTATTCTAAATAAATAAATAT
1 A-ATAATAAATATA-TAT-AATAAAT-AATAT
* *
13808099 AGAT-ATACATATAT-TAATACATAATAAT
1 A-ATAATAAATATATATAATAAATAAT-AT
13808127 AATAATAAATATA
1 AATAATAAATATA
13808140 AAAATACATA
Statistics
Matches: 105, Mismatches: 9, Indels: 26
0.75 0.06 0.19
Matches are distributed among these distances:
24 1 0.01
25 16 0.15
26 8 0.08
27 10 0.10
28 21 0.20
29 3 0.03
30 10 0.10
31 33 0.31
32 3 0.03
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (28 bp):
AATAATAAATATATATAATAAATAATAT
Found at i:13808074 original size:17 final size:16
Alignment explanation
Indices: 13807973--13808074 Score: 85
Period size: 14 Copynumber: 6.6 Consensus size: 16
13807963 AATAACAGAT
*
13807973 ATATAATTAGATAAATA
1 ATATAA-TATATAAATA
*
13807990 A-A-AATATAAAAATA
1 ATATAATATATAAATA
*
13808004 A-ATAAAATATAAA-A
1 ATATAATATATAAATA
13808018 ATAATAATA-AT-AATA
1 AT-ATAATATATAAATA
13808033 ATATAATA-ATAAAT-
1 ATATAATATATAAATA
13808047 ATATAACTATATAAATA
1 ATATAA-TATATAAATA
13808064 ATATACATATA
1 ATATA-ATATA
13808075 AATCTATTCT
Statistics
Matches: 71, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
14 28 0.39
15 20 0.28
16 12 0.17
17 10 0.14
18 1 0.01
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (16 bp):
ATATAATATATAAATA
Found at i:13808133 original size:9 final size:10
Alignment explanation
Indices: 13808103--13808156 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
13808093 AAATATAGAT
13808103 ATACATATATTA
1 ATACATA-A-TA
13808115 ATACATAATA
1 ATACATAATA
13808125 ATA-ATAATA
1 ATACATAATA
* *
13808134 A-ATATAAAA
1 ATACATAATA
13808143 ATACATAA-A
1 ATACATAATA
13808152 ATACA
1 ATACA
13808157 AAAGAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 1 0.03
9 19 0.50
10 10 0.26
11 1 0.03
12 7 0.18
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (10 bp):
ATACATAATA
Found at i:13808344 original size:1 final size:1
Alignment explanation
Indices: 13808333--13808393 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
13808323 AACATTGTCA
* * * * * * * *
13808333 TTTTTTGTTTTTTGTGTTTTTTTTTTGTTTTTTTTATGTTTTTTTATGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
13808394 ACCAAAGCTC
Statistics
Matches: 44, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (1 bp):
T
Found at i:13808353 original size:10 final size:11
Alignment explanation
Indices: 13808340--13808388 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
13808330 TCATTTTTTG
*
13808340 TTTTTTGTGTT
1 TTTTTTATGTT
*
13808351 TTTTTTTTGTT
1 TTTTTTATGTT
13808362 TTTTTTATG-T
1 TTTTTTATGTT
13808372 TTTTTTATGTT
1 TTTTTTATGTT
13808383 TTTTTT
1 TTTTTT
13808389 TTTTTACCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
10 10 0.29
11 25 0.71
ACGTcount: A:0.04, C:0.00, G:0.10, T:0.86
Consensus pattern (11 bp):
TTTTTTATGTT
Found at i:13808358 original size:13 final size:12
Alignment explanation
Indices: 13808334--13808393 Score: 61
Period size: 13 Copynumber: 4.8 Consensus size: 12
13808324 ACATTGTCAT
13808334 TTTTTGTTTTTTG
1 TTTTT-TTTTTTG
13808347 TGTTTTTTTTTTG
1 T-TTTTTTTTTTG
*
13808360 -TTTTTTTTATG
1 TTTTTTTTTTTG
13808371 TTTTTTTATGTTT-
1 TTTTTTT-T-TTTG
13808384 TTTTTTTTTT
1 TTTTTTTTTT
13808394 ACCAAAGCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
11 12 0.29
12 7 0.17
13 16 0.39
14 6 0.15
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:13808358 original size:20 final size:21
Alignment explanation
Indices: 13808333--13808386 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
13808323 AACATTGTCA
*
13808333 TTTTTTGTTTTTTGTGT-TTT
1 TTTTTTGTTTTTTGTATGTTT
*
13808353 TTTTTTGTTTTTTTTATGTTT
1 TTTTTTGTTTTTTGTATGTTT
*
13808374 TTTTATGTTTTTT
1 TTTTTTGTTTTTT
13808387 TTTTTTTACC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.04, C:0.00, G:0.11, T:0.85
Consensus pattern (21 bp):
TTTTTTGTTTTTTGTATGTTT
Found at i:13808388 original size:21 final size:22
Alignment explanation
Indices: 13808340--13808388 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
13808330 TCATTTTTTG
* *
13808340 TTTTTTGTGTTTTTTTTTTGTT
1 TTTTTTATGTTTTTTTTATGTT
13808362 TTTTTTATG-TTTTTTTATGTT
1 TTTTTTATGTTTTTTTTATGTT
13808383 TTTTTT
1 TTTTTT
13808389 TTTTTACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.04, C:0.00, G:0.10, T:0.86
Consensus pattern (22 bp):
TTTTTTATGTTTTTTTTATGTT
Found at i:13808457 original size:41 final size:42
Alignment explanation
Indices: 13808400--13808488 Score: 135
Period size: 41 Copynumber: 2.1 Consensus size: 42
13808390 TTTTACCAAA
**
13808400 GCTCCTCTAAACAGAGGTTCCACGACTTT-GGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAATAAATT
* *
13808441 GCTCCTCTAAACAGAGGCACCACGACTTTGGGGAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAATAAATT
13808483 GCTCCT
1 GCTCCT
13808489 TGGAAAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 27 0.63
42 16 0.37
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAATAAATT
Found at i:13808522 original size:61 final size:60
Alignment explanation
Indices: 13808427--13808607 Score: 242
Period size: 59 Copynumber: 3.0 Consensus size: 60
13808417 TTCCACGACT
*
13808427 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGGGAAGTAAATTGCTCC
1 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT-GGAAAGTAAATTGCTCC
13808488 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
1 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
* *** * * *
13808548 TCT--AAACA-GAGGCGCTCCTCTAAACAGAGGCACCATGACTTTTGAAAATAAATTGCTCC
1 T-TGGAAA-ATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
13808607 T
1 T
13808608 CTAAATAGAG
Statistics
Matches: 110, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
59 48 0.44
60 18 0.16
61 44 0.40
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (60 bp):
TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
Found at i:13808566 original size:18 final size:18
Alignment explanation
Indices: 13808543--13808578 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
13808533 AAAGTAAATT
13808543 GCTCCTCTAAACAGAGGC
1 GCTCCTCTAAACAGAGGC
13808561 GCTCCTCTAAACAGAGGC
1 GCTCCTCTAAACAGAGGC
13808579 ACCATGACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.17
Consensus pattern (18 bp):
GCTCCTCTAAACAGAGGC
Found at i:13808660 original size:42 final size:42
Alignment explanation
Indices: 13808561--13808902 Score: 519
Period size: 42 Copynumber: 8.2 Consensus size: 42
13808551 AAACAGAGGC
*
13808561 GCTCCTCTAAACAGAGGCACCATGACTTTTGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
13808602 GCTCCTCTAAATAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* *
13808644 GCTCCTCTAAACAGAGGTACCACGACTTTGGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
13808685 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* * * * *
13808727 GCTCCTCTAAATAGAGGTACCATGACTTTTGGAAAGTAACTT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* * *
13808769 GCTCCTCTAAAACAGAGGTACCATGACTTTTGGAAAGTAAATT
1 GCTCCTCT-AAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
13808812 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
13808854 GCTCCTCTAAACAGAGGCACCACGA-TTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTT-GAAAAGTAAATT
13808896 GCTCCTC
1 GCTCCTC
13808903 GACAATCATG
Statistics
Matches: 278, Mismatches: 19, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
41 76 0.27
42 162 0.58
43 40 0.14
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
Found at i:13808701 original size:83 final size:83
Alignment explanation
Indices: 13808561--13808902 Score: 524
Period size: 83 Copynumber: 4.1 Consensus size: 83
13808551 AAACAGAGGC
* * *
13808561 GCTCCTCTAAACAGAGGCACCATGACTTTTGAAAATAAATTGCTCCTCTAAATAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
13808626 ACTTTTGAAAAGTAAATT
66 ACTTTTGAAAAGTAAATT
*
13808644 GCTCCTCTAAACAGAGGTACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
*
13808709 ACTTTGGAAAAGTAAATT
66 ACTTTTGAAAAGTAAATT
* * * * * *
13808727 GCTCCTCTAAATAGAGGTACCATGACTTTTGGAAAGTAACTTGCTCCTCTAAAACAGAGGTACCA
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATTGCTCCTCT-AAACAGAGGCACCA
* *
13808792 TGACTTTTGGAAAGTAAATT
64 CGACTTTTGAAAAGTAAATT
13808812 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATTGCTCCTCTAAACAGAGGCACCAC
13808877 GA-TTTTGGAAAAGTAAATT
65 GACTTTT-GAAAAGTAAATT
13808896 GCTCCTC
1 GCTCCTC
13808903 GACAATCATG
Statistics
Matches: 234, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
83 106 0.45
84 62 0.26
85 66 0.28
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTTGAAAAGTAAATT
Found at i:13808848 original size:127 final size:125
Alignment explanation
Indices: 13808561--13808902 Score: 562
Period size: 127 Copynumber: 2.7 Consensus size: 125
13808551 AAACAGAGGC
* *
13808561 GCTCCTCTAAACAGAGGCACCATGACTTTTGAAAA-TAAATTGCTCCTCTAAATAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAATAGAGGCACCAC
*
13808625 GACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAATAAATT
66 GACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAATAAATT
* *
13808685 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAATAGAGGTACCAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAATAGAGGCACCAC
* * *
13808750 GACTTTTGGAAAGTAACTTGCTCCTCTAAAACAGAGGTACCATGACTTTTGGAAAGTAAATT
66 GACTTTTGGAAAGTAAATTGCTCCTCT-AAACAGAGGTACCACGAC-TTTGGAAAATAAATT
*
13808812 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAATAGAGGCACCAC
13808877 GA-TTTTGGAAAAGTAAATTGCTCCTC
66 GACTTTTGG-AAAGTAAATTGCTCCTC
13808903 GACAATCATG
Statistics
Matches: 202, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
124 33 0.16
125 52 0.26
126 23 0.11
127 94 0.47
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (125 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAATAGAGGCACCAC
GACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAATAAATT
Found at i:13810105 original size:8 final size:7
Alignment explanation
Indices: 13810090--13810152 Score: 60
Period size: 7 Copynumber: 8.9 Consensus size: 7
13810080 AATTTGAATC
13810090 TCTTTTT
1 TCTTTTT
13810097 TCATTTTTT
1 TC--TTTTT
13810106 TCATTTTT
1 TC-TTTTT
*
13810114 TCTTCTT
1 TCTTTTT
13810121 TCTTTCTT
1 TCTTT-TT
13810129 T-TTTTT
1 TCTTTTT
13810135 TCTTTTT
1 TCTTTTT
13810142 T-TTTTT
1 TCTTTTT
13810148 T-TTTT
1 TCTTTT
13810153 CATCATCTTC
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
6 13 0.27
7 19 0.39
8 10 0.20
9 7 0.14
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (7 bp):
TCTTTTT
Found at i:13810132 original size:36 final size:38
Alignment explanation
Indices: 13810092--13810177 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 38
13810082 TTTGAATCTC
*
13810092 TTTTTTCATTTTTTTCATTTTTTCTTC-T-TTCTTTCTTT
1 TTTTTTCATTTTTTTCATTTTTTCATCATCTTC-TT-TTT
* **
13810130 TTTTTTCTTTTTTTTTTTTTTTTCATCATCTTCTTTTT
1 TTTTTTCATTTTTTTCATTTTTTCATCATCTTCTTTTT
*
13810168 TTTTCTCATT
1 TTTTTTCATT
13810178 CTTCACCTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
38 34 0.85
39 3 0.08
40 3 0.08
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (38 bp):
TTTTTTCATTTTTTTCATTTTTTCATCATCTTCTTTTT
Found at i:13810166 original size:19 final size:19
Alignment explanation
Indices: 13810109--13810181 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 19
13810099 ATTTTTTTCA
*
13810109 TTTTTTCTTCTTTCTTTCTTT
1 TTTTTTC-TCATTC-TTCTTT
* *
13810130 TTTTTTCT--TTTTTTTTT
1 TTTTTTCTCATTCTTCTTT
13810147 TTTTTTCATCA-TCTTCTTT
1 TTTTTTC-TCATTCTTCTTT
13810166 TTTTTTCTCATTCTTC
1 TTTTTTCTCATTCTTC
13810182 ACCTATTGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
17 12 0.27
18 6 0.14
19 18 0.41
20 1 0.02
21 7 0.16
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTTCTCATTCTTCTTT
Found at i:13810531 original size:11 final size:11
Alignment explanation
Indices: 13810515--13810539 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13810505 GTGGCATTTA
13810515 TTTTTTTCTTT
1 TTTTTTTCTTT
13810526 TTTTTTTCTTT
1 TTTTTTTCTTT
13810537 TTT
1 TTT
13810540 GAGACCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:13811668 original size:31 final size:31
Alignment explanation
Indices: 13811630--13811692 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
13811620 AAGCTAGCTG
13811630 GTATGGGTAGGATGAGGTATTATTCACAGTA
1 GTATGGGTAGGATGAGGTATTATTCACAGTA
13811661 GTATGGGTAGGATGAGGTATTATTCACAGTA
1 GTATGGGTAGGATGAGGTATTATTCACAGTA
13811692 G
1 G
13811693 GATAGTATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.06, G:0.33, T:0.32
Consensus pattern (31 bp):
GTATGGGTAGGATGAGGTATTATTCACAGTA
Found at i:13814232 original size:59 final size:58
Alignment explanation
Indices: 13814104--13814505 Score: 495
Period size: 59 Copynumber: 6.9 Consensus size: 58
13814094 TCTTGTGTAG
* *
13814104 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATCATTTTTTTGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTGAAATTTATTTTTAA
**
13814162 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATCTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTG-AAATTTATTTTTAA
* * * * *
13814221 GGAAAATTGATACTTTTAACTTTTCCCTAAAAAT-ATTTTTTGGAAATTTCGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTGAAATTT--ATTTTTAA
* * *
13814280 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTTAAATTTACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-C-TTTTTTTTGAAATTTATTTTTAA
* * * *
13814340 AGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAAATTTGATTATTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTG-AAATTT-ATTTTTAA
* * * **
13814400 GGGAAACTGATACTTTCAACTTTTCCTCAAAAA-C-CCTTTTTGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTGAAATTTATTTTTAA
* * * *
13814456 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAATTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTGAAATTT
13814506 TTTATTTTTA
Statistics
Matches: 293, Mismatches: 41, Indels: 20
0.83 0.12 0.06
Matches are distributed among these distances:
56 35 0.12
57 12 0.04
58 69 0.24
59 92 0.31
60 73 0.25
62 12 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTGAAATTTATTTTTAA
Found at i:13814533 original size:9 final size:9
Alignment explanation
Indices: 13814519--13814597 Score: 78
Period size: 8 Copynumber: 9.0 Consensus size: 9
13814509 ATTTTTATTT
13814519 AAAAAAATA
1 AAAAAAATA
13814528 AAAAAAAT-
1 AAAAAAATA
13814536 AAAAAAATA
1 AAAAAAATA
*
13814545 AAGAAAAGT-
1 AA-AAAAATA
13814554 AAAAAAAT-
1 AAAAAAATA
13814562 -AAAAAAT-
1 AAAAAAATA
13814569 AAAAAAATA
1 AAAAAAATA
13814578 AAATAAAGATA
1 AAA-AAA-ATA
*
13814589 AAAAGAATA
1 AAAAAAATA
13814598 TTAAATAAAC
Statistics
Matches: 61, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
7 7 0.11
8 20 0.33
9 18 0.30
10 10 0.16
11 6 0.10
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (9 bp):
AAAAAAATA
Found at i:13814557 original size:35 final size:35
Alignment explanation
Indices: 13814518--13814597 Score: 112
Period size: 33 Copynumber: 2.3 Consensus size: 35
13814508 TATTTTTATT
13814518 TAAAAAAATAAAAAAAATAAAAAAATAAAGA-AAAG-
1 TAAAAAAAT-AAAAAAATAAAAAAATAAA-ATAAAGA
13814553 TAAAAAAAT-AAAAAATAAAAAAATAAAATAAAGA
1 TAAAAAAATAAAAAAATAAAAAAATAAAATAAAGA
13814587 TAAAAAGAATA
1 TAAAAA-AATA
13814598 TTAAATAAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
32 1 0.02
33 22 0.54
34 6 0.15
35 12 0.29
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (35 bp):
TAAAAAAATAAAAAAATAAAAAAATAAAATAAAGA
Found at i:13814594 original size:8 final size:8
Alignment explanation
Indices: 13814518--13814580 Score: 92
Period size: 8 Copynumber: 7.6 Consensus size: 8
13814508 TATTTTTATT
13814518 TAAAAAAA
1 TAAAAAAA
13814526 TAAAAAAAA
1 T-AAAAAAA
13814535 TAAAAAAA
1 TAAAAAAA
13814543 TAAAGAAAA
1 TAAA-AAAA
13814552 GTAAAAAAA
1 -TAAAAAAA
13814561 T-AAAAAA
1 TAAAAAAA
13814568 TAAAAAAA
1 TAAAAAAA
13814576 TAAAA
1 TAAAA
13814581 TAAAGATAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.14
8 24 0.47
9 16 0.31
10 4 0.08
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (8 bp):
TAAAAAAA
Found at i:13815532 original size:32 final size:31
Alignment explanation
Indices: 13815492--13815592 Score: 107
Period size: 31 Copynumber: 3.2 Consensus size: 31
13815482 TCAAATAAAT
*
13815492 ATAAAAAAATAATAGATA-ATTAGAACAGATAA
1 ATAAAAAAATAACAGATATATTA-AA-AGATAA
* * *
13815524 ATAAAAAAAAAACAGATATATTATAGGATAA
1 ATAAAAAAATAACAGATATATTAAAAGATAA
**
13815555 ATAAAAAAATAACAGATATA-TAATTGGATAA
1 ATAAAAAAATAACAGATATATTAA-AAGATAA
13815586 ATAAAAA
1 ATAAAAA
13815593 TACAAAAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
30 2 0.03
31 37 0.62
32 17 0.28
33 4 0.07
ACGTcount: A:0.65, C:0.03, G:0.09, T:0.23
Consensus pattern (31 bp):
ATAAAAAAATAACAGATATATTAAAAGATAA
Found at i:13815554 original size:31 final size:31
Alignment explanation
Indices: 13815519--13815592 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
13815509 AATTAGAACA
*
13815519 GATAAATAAAAAAAAAACAGATATATTATAG
1 GATAAATAAAAAAAAAACAGATATATAATAG
* *
13815550 GATAAATAAAAAAATAACAGATATATAATTG
1 GATAAATAAAAAAAAAACAGATATATAATAG
13815581 GATAAATAAAAA
1 GATAAATAAAAA
13815593 TACAAAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.65, C:0.03, G:0.09, T:0.23
Consensus pattern (31 bp):
GATAAATAAAAAAAAAACAGATATATAATAG
Found at i:13815611 original size:17 final size:17
Alignment explanation
Indices: 13815582--13815640 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
13815572 ATATAATTGG
*
13815582 ATAAATAAAAATACAAAA
1 ATAAAT-AAAATATAAAA
13815600 ATAAATAAAATATAAAA
1 ATAAATAAAATATAAAA
*
13815617 AT-AATAATAATATAATA
1 ATAAATAA-AATATAAAA
13815634 ATAAATA
1 ATAAATA
13815641 TATAACTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.14
17 22 0.59
18 10 0.27
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
ATAAATAAAATATAAAA
Found at i:13815631 original size:8 final size:8
Alignment explanation
Indices: 13815599--13815661 Score: 55
Period size: 8 Copynumber: 8.2 Consensus size: 8
13815589 AAAATACAAA
13815599 AATAA-AT
1 AATAATAT
13815606 AA-AATAT
1 AATAATAT
*
13815613 AAAAATAAT
1 AATAAT-AT
13815622 AATAATAT
1 AATAATAT
13815630 AATAATA-
1 AATAATAT
13815637 AAT-ATAT
1 AATAATAT
*
13815644 AACTATTA-
1 AA-TAATAT
13815652 AATAATAT
1 AATAATAT
13815660 AA
1 AA
13815662 ATATAAATCT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
6 5 0.11
7 15 0.33
8 17 0.37
9 9 0.20
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (8 bp):
AATAATAT
Found at i:13815645 original size:22 final size:22
Alignment explanation
Indices: 13815603--13815667 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
13815593 TACAAAAATA
*
13815603 AATAAAAT-ATAA-AAATA-AT
1 AATAATATAATAATAAATATAT
13815622 AATAATATAATAATAAATATAT
1 AATAATATAATAATAAATATAT
*
13815644 AACTATTA-AATAATATAA-ATAT
1 AA-TAATATAATAATA-AATATAT
13815666 AA
1 AA
13815668 ATCTATTCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.18
20 4 0.10
21 5 0.13
22 17 0.44
23 6 0.15
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
AATAATATAATAATAAATATAT
Found at i:13815666 original size:6 final size:6
Alignment explanation
Indices: 13815582--13815669 Score: 53
Period size: 6 Copynumber: 15.0 Consensus size: 6
13815572 ATATAATTGG
* * * *
13815582 ATAAAT AAAAAT ACAAAA ATAAAT A-AAAT ATAAAA AT-AAT A-ATAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATA-AAT
*
13815628 AT-AAT AATAAAT ATATAACT ATTAA- AT-AAT ATAAAT ATAAAT
1 ATAAAT -ATAAAT ATA-AA-T ATAAAT ATAAAT ATAAAT ATAAAT
13815670 CTATTCTAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
4 2 0.03
5 15 0.23
6 37 0.58
7 7 0.11
8 3 0.05
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (6 bp):
ATAAAT
Found at i:13815667 original size:11 final size:11
Alignment explanation
Indices: 13815600--13815667 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 11
13815590 AAATACAAAA
*
13815600 ATAAATAAAAT
1 ATAAATATAAT
*
13815611 ATAAAAATAAT
1 ATAAATATAAT
13815622 A-ATAATATAAT
1 ATA-AATATAAT
13815633 AATAAATATATAACT
1 -AT-AA-ATATAA-T
*
13815648 ATTAA-ATAAT
1 ATAAATATAAT
13815658 ATAAATATAA
1 ATAAATATAA
13815668 ATCTATTCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
10 6 0.13
11 25 0.56
12 2 0.04
13 2 0.04
14 9 0.20
15 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (11 bp):
ATAAATATAAT
Found at i:13815733 original size:9 final size:10
Alignment explanation
Indices: 13815703--13815756 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
13815693 AAATACAGAT
13815703 ATACATATATTA
1 ATACATA-A-TA
13815715 ATACATAATA
1 ATACATAATA
13815725 ATA-ATAATA
1 ATACATAATA
* *
13815734 A-ATATAAAA
1 ATACATAATA
13815743 ATACATAA-A
1 ATACATAATA
13815752 ATACA
1 ATACA
13815757 AAAGAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 1 0.03
9 19 0.50
10 10 0.26
11 1 0.03
12 7 0.18
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (10 bp):
ATACATAATA
Found at i:13816653 original size:26 final size:26
Alignment explanation
Indices: 13816624--13816676 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13816614 CCGGTCTGAT
13816624 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13816650 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13816676 C
1 C
13816677 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13817555 original size:26 final size:26
Alignment explanation
Indices: 13817526--13817578 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13817516 CCGGTCTGAT
13817526 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13817552 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13817578 C
1 C
13817579 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13819435 original size:711 final size:712
Alignment explanation
Indices: 13817691--13820585 Score: 3900
Period size: 703 Copynumber: 4.1 Consensus size: 712
13817681 CTACTATCGT
* *
13817691 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
13817756 CAAGCGGACGGGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
13817821 AGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGGTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * *
13817886 TAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTC
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
13817951 TTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAATTTTTTTTGAAAGGAGTTTT
261 TTTTTCAAGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTCAAAGGAGTTTT
* * *
13818016 GGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGTATGCAC-AAAAAATTCAGCTAAA
326 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGT-GGCACAAAAAAATTCAGCTAAA
* *
13818080 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATG
390 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * * * *
13818145 GCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGCTCTTGAGGATTG
455 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
13818210 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCAAAC
520 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * *
13818275 CCCCCCGGCCCCCCCAATCACCGGAACCCCAATACCGCCAGTCAGGTTCTCCGACGATGCT-C-C
585 CCCCCCGGCCCCCTGAA-CACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGC
* *
13818338 GA--------C---GAAGAAAAATGCGGCACCGGCACATGCCCGAGCCCAGCATGTGCTACCGC
649 GATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * *
13818391 AACCCCCGGTCCGGTCCGATCTTAGATTGTGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
13818456 CGAGCAGGCGAGCGGGCGGGCGGGCAC-ACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CGAGC--G-GA-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
13818520 CGATAGGGTGGTAGGTGGGTTCAGGCACATCTTGATATTTCTGCATGCCAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
13818585 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * **
13818650 TCTATTTTTGACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTTGGAAGGAG
257 TCTATTTTTCAAGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTCAAAGGAG
* * * *
13818715 TTTTGGCCCCAAACTTGGTAGATGTGATCCCTGTAGTTTTGTTGGTGGCACAAAAAAAATCAGCT
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTGGCACAAAAAAATTCAGCT
* **
13818780 AAAAACTCGAAGTGTGTAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
387 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
13818845 ATGGCTACTGGCCGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTTTTGAGGT
452 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
13818910 TTCATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
517 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
13818975 CA-CCCCCCGGTCCCCCTGAACACCAGAACACCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
582 CACCCCCCCGG-CCCCCTGAACACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * *
13819039 CATCGATGGTG-CTCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC
646 C-GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
*
13819103 TGC
710 CGC
** * * * ** * * *
13819106 AACTGTC-GACCGGTCTGATCTTAGGCTAGGAATGAACTCTTTATGCCTAAGCTAAACGATGAAA
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
13819170 TGAGCGGATGGGCAGGCGGGCACTACGCCGGCCAGATAGACGGGATGCGCAAGTCGTGGATCGAT
66 CGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
13819235 AAGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
13819300 TAAATTCATACAATGGTTCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * **
13819365 TTTTTCAATATTTTTGAAACTTTTTGA-GGTTTGGGATTTTTTAAAATTTTTTTCAAAACAGTTT
261 TTTTTCAAGATTTTCGAAACTTTTT-ACGGTTTGGGATTTTTTAAAATTTTTTTCAAAGGAGTTT
* * * * *
13819429 TGGCCCCAAACTTGGTAGATGTGATCTTTTTATTTTTGTTGGCGTGCA-AAAGAAAATTCAGCAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTG-GCACAAA-AAAATTCAGCTA
* *
13819493 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAA
388 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
13819558 TGGCTACTAGCACCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
453 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
** *
13819623 TGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCAATCGCACATCATGTGCGCAC
518 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * ** ** * *
13819688 ACCCCACCCCCAGCCCCTCTGATCATCGAAACCCCAATGCCATCGGTCAGGTTCTGTGGCAATGC
583 A--CC-CCCCCGGCCCC-CTGAACACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* *
13819753 TCCGGCGTTGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
644 TCC-GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
13819818 GCTGC
708 GCCGC
* * * * *
13819823 AACCCTCGGTCTGGTCCGATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * * *
13819888 CGAGCGGGCGGATGGGTGGGCGGGCACTACGTCGGCCAGATAGACGCGATGTGCAAGCTGTGGAT
66 CGA----GCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * **
13819953 CGATAGGGTAGTAGCTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
13820018 CTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
13820083 TCTA-TTTTCACGATTGTT-GAAACTTTTTATGGTTTGGGATTTTTTAAAA-TTTTTTCAGAAGG
257 TCTATTTTTCAAGATT-TTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTCA-AAGG
* * * *
13820145 ATTTTTTGG-CCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTAGGCAT-ACACAAAAAAATT
320 A-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG--TGGCACAAAAAAATT
*
13820208 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
382 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
13820273 CTTTACA-GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGCGTTCT
447 CTTTA-ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
13820337 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
511 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
13820402 TGCGCACACCCCCCCGGCCCCCT-ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGA
576 TGCGCACACCCCCCCGGCCCCCTGAACACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* ** * * * *
13820466 TACTTCCGCGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGACCAAGCCTAGCATGT
641 TGC-TCCGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
13820531 GCTGCCGT
705 GCTGCCGC
*
13820539 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
13820586 TTAGACTGGG
Statistics
Matches: 1928, Mismatches: 224, Indels: 70
0.87 0.10 0.03
Matches are distributed among these distances:
700 62 0.03
702 51 0.03
703 456 0.24
704 14 0.01
705 3 0.00
710 13 0.01
711 254 0.13
712 193 0.10
714 49 0.03
715 55 0.03
716 187 0.10
717 63 0.03
718 60 0.03
719 2 0.00
720 9 0.00
721 269 0.14
722 188 0.10
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCAAGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTCAAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTGGCACAAAAAAATTCAGCTAAAA
ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGGCCCCCTGAACACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGA
TGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
Found at i:13820595 original size:26 final size:26
Alignment explanation
Indices: 13820559--13820610 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13820549 CCAGTCTGAT
13820559 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13820585 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13820611 GCTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13821497 original size:26 final size:26
Alignment explanation
Indices: 13821468--13821519 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13821458 CCGATCTTTG
13821468 ACTGGGAATGAACTCCGTATGCTTAA
1 ACTGGGAATGAACTCCGTATGCTTAA
13821494 ACTGGGAATGAACTCCGTATGCTTAA
1 ACTGGGAATGAACTCCGTATGCTTAA
13821520 GTCAACGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCTTAA
Found at i:13821957 original size:896 final size:892
Alignment explanation
Indices: 13819814--13832992 Score: 15894
Period size: 896 Copynumber: 14.8 Consensus size: 892
13819804 GCCCAGCATG
* * *
13819814 TGCTGCTGCAACCCTCGGTCTGGTCCGATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13819879 CCGATGAAACGAGCGGGCGGATGGGTGGGCGGGCACTACGTCGGCCAGATAGACGCGATGTGCAA
66 CCGACGAAACGAGCGGGC--------GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * ***
13819944 GCTGTGGATCGATAGGGTAGTAGCTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
13820009 TTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13820074 GACTCGTTTTCTA-TTTTCACGATTGTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTT
253 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
13820138 CAGAAGGATTTTTTGG-CCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTAGGCATACACAAA
318 CGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
13820202 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
382 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13820267 TAGACACTTTACA-GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTG
447 CAGACACTTTA-ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
13820331 CGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
511 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
13820396 ATCATGTGCGCACACCCCCCCGG--CCCCCTATCATCGGAACCCCAATGCCGCCGGTCAGGTTCT
576 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-
* * * * *
13820459 TCGACGATACTTCCG-CGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGACCAAGCC
640 TC--CGATGC-T-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * **
13820523 TAGCATGTGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
701 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
13820588 AGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACAAAACAAGCGGTACGGGCGCTCAGCCG
766 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCAGCCG
* * ** * * * ** *
13820653 GCCAGAGGGGTGAGATTTGCAAGCTGGGGATCGGTCAGGTCCCCCTCTGCGCACTGTC-GAGCC
830 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG-CAGATCC
* * * * * * *
13820716 GGCTGCCACAACCATCAGTCGGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13820781 CCGAC-AAATGAGCGGGCAGGCGGGCGGGCGAGCAGTATGCCGGCCAGAGAAACGGGATGCACAA
66 CCGACGAAACGAGC--G--GGCGGGCGGGC-A-C--TACGCCGGCCAGAGAGACGGGATGCGCAA
** * * ** *
13820845 GCAATGGATCGATAAGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTATGTGCCAATGCCC
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
13820910 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGAT
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
13820975 GACTCGTTTGCTATTTTTCACAATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTT
253 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
13821040 CGGAAAGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
318 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
13821105 CAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTT
383 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
13821170 AGACACTTTAATGGCTACTGGCAACAAACCAGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
448 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
13821235 TTCTTGAAATTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
513 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** ** * * *
13821299 CATTTATGCACACCCCCCTCGGCCCCCCCGATCACCGGAAACCCAGTGTCGCCGGTCAGGTTCTC
578 CATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
13821364 CGGGGATGCTTCGACGATGGTGCCCC-AGCGATGAAAAATACGGCACCAGCACATGGCCGAGCCC
642 C---GATGC-TCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
13821428 AGCATGTGTTGCCGCAACCCTCGGTCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTA
702 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * ** * * **
13821493 AACTGGGAATGAACTCCGTATGCTTAAGTCAACGAACGAAACAAGCGTGTGGGCGCTCAGTTGGC
767 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
** * * *
13821558 CAGAGGGGCGGGATGCGCAAGCCGAAGATCGACCGGGTCCCCCTCTGCATGATGCAGATCC
832 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCAGATCC
* * *
13821619 TGCTGCCACAACCCAT-GGTCTGGTCCGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCGCAACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13821683 ACCGACGAAACGAGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGATGGGATACGCAAGCCGTGG
65 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
**
13821748 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
*
13821813 GGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * * *
13821878 TTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTTAAAGTTTTTCGGATA-
260 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA-AG
* *
13821942 GAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATC
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
13822007 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* ** *
13822072 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGATTGTGAGTTCCTG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
* *
13822137 AGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * ** ** *
13822202 CGCACACCCCCCTCCGACCCCCCGATCGTCGGAACCCTAATGCTACCCATCAAGTTCTCCGGCGA
584 CGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--CGA
13822267 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
645 TGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * ** * * * * *
13822332 GCTGCTGCAACCCTCGGTCTGATCAAATCTTATACTTGGAATGAACTTCGTATACGTAGACTGGG
709 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
13822397 AATGAACTCCGTGTGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGG
774 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * *
13822462 GCGGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTACTGTC-GATCC
839 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG-CAGATCC
** * * * *
13822516 TGCTGTTGCGACCCTCGGCCTGGTCTC-ATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCTGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
13822580 ACCGACGAAACAAGCGAGCGGGTAGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
65 ACCGACG--A-AA-CGAGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
13822645 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACATGCCAATGCC
122 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
13822710 ATTGTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
187 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
13822775 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
252 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
13822840 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTATGTTTTTGTTGGGATGTC-C-A
317 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-CACAA
* * *
13822903 AAAAATTCAGCGAAAAACTTGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATT
381 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13822968 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTG
446 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
13823033 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
511 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * * * *
13823098 ATCAAGTGCGCACA-CCCCCCAACCCCCCCGATC-ACTGAAACCCTAATGTCGTCGGTCAGGTTC
576 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * *
13823161 TCCGGTAATACTCCGACGATGGTGCCCCCATGAAGAAAAATACGACACCAGCACATGCTCGAGCT
640 TCC-G--ATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
13823226 CAGCATGTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTC
701 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * * **
13823291 AGATTGGGAATCAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTG-TGGCAGCTCAGTAG
766 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCG
* * * * * * * *
13823355 GGCAGAGGGGTGGGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCTGGGTACTGCTGATCC
830 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCAGATCC
* ** ** * * * * * * *
13823418 TGCTACCGCAACCCTCAATCCAGTCTGATCATAAACTGGGAACGAACTTCATATGCTTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
13823483 CCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGTCAGAAAGATGGGATGCGTAAGTCATGGA
66 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * **
13823548 TCAATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACATGCCAACACCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* * *
13823613 GCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGTAAGACGACTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * ** ** *
13823678 TTCTATTTTCCACGATTTTAGAAACTTTTTACGGTTCAAGATTTTGCAAAATTTTTTTGGAAGGA
261 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
13823743 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACAAAAAAAATCAG
326 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
13823808 CTAAAAACT-GAAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCTATTTCAAACACT
391 CTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * **
13823872 TTAGTGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
* *
13823937 GGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAAG-ACCAGCACCCATCGCACATCATGTC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTG
* * * * *
13824001 CGCACACCCCCTCGGCCCCCCCGATCGTCGAAACCCTAATACCGTCGGTCAGGTT-T----T-C-
584 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGCT
* * ** * *
13824059 CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCTGCACATGATCGAGCCTAGTATGTGCTGC
649 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* ** * * * *
13824124 AGCAACCCTCAATTTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGA
714 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
13824189 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGTTCAGCCGGGCAAAGGGGCGAG
779 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* *
13824254 ATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGTGTGTTGCCA-ATCC
844 ATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTG-CAGATCC
* * * * *
13824303 TACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTATGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
13824368 CCGACGAAACGAGCAGGCAGGCGTACGGGCGGGCGGGCACTACGTCGGCC-GAGAGACGGGATGC
66 CCGACG-AA--A-C--G-A---G--CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * **
13824432 GTAAGGCGCGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
119 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* * *
13824497 GACATTCTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
184 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
** *
13824562 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCGAGATTTTTTAAAATT
249 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * *
13824627 TTTTCAGAAGGAGTTTCGGCCCCAAACTTCGTAGATGTGATCCTTGCATTTTTGTTGGCATGCAC
314 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
13824692 AAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTATCCCCA
379 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
** *
13824757 TTTCAGACACTTTAAACGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
444 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
13824822 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATCTAAGGGCCAAGTACCAGCACCCATCGC
509 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
13824887 ACATCATGTGCGCACACCCCCCCTGGCCCCCCCGATCGTCGAAACACCAATGCCGCCGGTCAGGT
574 ACATCATGTGCGCACACCCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
13824952 TCTCCGGCGATGCTCAGACGATGGTGCCCC-AGGGAAGAAAAATGTGACACCAGCACATGTCCGA
638 TCT-C--CGATGCTC-GACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * *
13825016 GCCTAGCATGTGCTACCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
698 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * *
13825081 CTTAGACTGGGATTGAACTCGGTATGCCTAAATCAACCCACGAAATGGGCTTACGAGTGCTCAGC
763 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
13825146 CGGCCAGAAGGGATGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCTGATCT
828 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCAGATCC
* * * *
13825211 TGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCGGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13825276 CCGATGAAACAAGCAGGCGGGCGTGCGGGCGGGCGGGCACTACGCCGACAAGAGAGACGGGATGC
66 CCGACGAAAC--G-A---------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *** *
13825341 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTTCCAAT
119 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* * *
13825406 GCCATTTTTATGGGCTTGTACATTCATACAGTGGTCCCTTAAAGCC-TCACGTCGAAGTGTCATG
184 GCCATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGT-GAAGTTTCATG
* * ** *
13825470 G-AAGACGACTCAATTTTCTAATTTTTCACAGATTTTTGAAAACATTATTGTGGTTCCGGATTTT
246 GCAAGACGACTC-GTTTTCT-ATTTTTCAC-GATTTTTG-AAAC-TTTTTACGGTTCGGGATTTT
* * *
13825534 TTAAAAATTTTTTCGAAAGGAATTTTTGGCCCCAAACTTGGTAGACATGATCCCTTGTATTTTTG
306 TT-AAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTG
* *
13825599 TTGGCATGCACAAAAAATTTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
368 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
13825664 AAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
433 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
** * *
13825729 TTAAGGGGGTGTGAGTTCTCCATGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCA
498 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
13825794 GCACCGATCGCATATCATGTGCGCACACCCCCCCGGGCCCCCCAATCGTCGGAACCCCAATGCCG
563 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* *
13825859 CCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCTGCACCAGCA
628 CCGGTCAGGTTCTCC---GATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * **
13825924 CATGCCCGAGCCCAGCTTGTGCGGCCGCAACCCTTGAACTGGT-TCGATCTTAGACTGGGAATGA
689 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGA
* * * * *** *
13825988 ACTCCGTATGC--A-A-----AA-G----CC--A-ACCGAAG--AAACGA-GCAGGTGGGCGTGC
753 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGC
* * *** * *
13826034 GGGTGTTCAGTTAGCCAGAGGGCCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGT
817 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
*
13826099 GCTGCCGATCC
882 GCTGCAGATCC
* * * * * * **
13826110 TGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACCGGGAATTAACTTTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13826175 CTGACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTATGCCGGCTAGAGAGACGGGATACGCAA
66 CCGACGAAACGA----GC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
13826240 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGA-GTGCCAATGCC
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCC
13826304 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
187 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * **
13826369 CGACTCGCTTTCTATTTCTCACGATGTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
252 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* ** * * * *
13826434 TCAGAAGGAGTTTTGGTGCCAAACTTGGTAGCCATGATCCTTGTAGTTTTGTTGGCATGCATAAA
317 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13826499 AGAAATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATT
382 A-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
13826564 TTAGACACTTTAATGGCTGCTAGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTG
446 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13826629 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCCCAC
511 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13826694 ATCTTGTGCGCA-ACCCCCCGCTCGGCCCCCCCGATCG-CTAGAACCCCAATGCCGTCAGTCA-G
576 ATCATGTGCGCACA-CCCCC-C-CGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGG
* *
13826756 --CTTC--T-C-CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
637 TTCTCCGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * **
13826815 AGCATGTGCTGCCGCAACCGTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
702 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
13826880 GACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCGCTCAGCCGGC
767 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
13826945 CAAAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCA-ATCC
832 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT-GCAGATCC
* * * * * * * ** **
13827006 TACTACCGTAACGCTTGGTTTTGTTTGATCTTAGACTATGAATGAA-TACCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCA
* *
13827070 ACTGACGAAACGAGTGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGA----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * **
13827135 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATGTCTGCATGCCAATGATATTT
126 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * *
13827200 TTATGGCCTGTAAATTCATAAAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGAC
191 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
13827265 TCGCTTTCTATTTCTCACGATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTCAG
256 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * *
13827330 AAGGAGTTTTGGACCCAAACTTGGTAGCCGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACA
321 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * * *
13827395 TTCAGCTAAGAAA-TCGAAGGGTACAATATTTTGTGACCATTTAAAAAAAGTGTCACCATTCCAT
386 TTCAGCTAA-AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
13827459 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
450 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
13827523 CTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
515 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** *
13827588 TGTGCGCACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAACACCGTCGGTCAGGTTCTCC-
580 TGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
13827652 --G---G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
644 ATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* ** **
13827711 GCTGCCGC--TCC-C-GTC----C-GATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTACG
709 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
13827767 AATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGTTCAGTCGGCCAGAGGG
774 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * *** *
13827832 CCGGGATGCACAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTATTGATCT
839 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCAGATCC
** * * *
13827886 TGCTGCTACAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13827951 CCGATGAAACGAGCGGGCGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
13828016 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCT-CATGCCAATGCCATTTTTAT
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTACATGCCAATGCCATTTTTAT
*
13828080 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGC
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
13828145 TTTCTATTTTTCACAATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTCAGTAGG
260 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
13828210 AGTTTTAGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
325 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
13828275 GCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
13828340 TTAATGGCTACTGGTAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGGGTTCTCGA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
*
13828405 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCATGTGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * ** * * *
13828470 ACACACCCCCTCCGTCCACGTCGATCGTCGGAACCCCAATGTCGCTGGTCA-G--CT--TAT-C-
585 GCACACCCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGCT
* * * * * ** **
13828528 CGGCGATGGTGCCCCGATGAAGAAAAATTCAGCACCACCACATTTCCGAGCGTAGCATGTGCTGC
649 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
13828593 CGCAACCCTCAGTCTGATCCGATCTTAGACTGGTAATGAACTCCGTATGCCTAGACTGGGAATGA
714 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
13828658 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAGTCGGCCAGAGGGGCAGG
779 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * *
13828723 ATGCGCAAGCCGGGGATC-AGTTGGGTCCCCCTCTGCGTGCTGCCGATCT
844 ATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCAGATCC
** * * *
13828772 TGCTGCCATAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * **
13828837 CCAACGAAACAAGCGGGCGGGCGGGCATTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTCTA
66 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
13828902 TCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCACT-CCAATGCCATTTTTAT
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA-TGCCAATGCCATTTTTAT
* * * *
13828965 GGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTAGCAAGACGACTTGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
13829030 TTTATATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAGTTTTTTCGGAAGG
260 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
13829095 AGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCA
325 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
13829160 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * ** **
13829225 TTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGCATGAGTTCTCAA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
*
13829290 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCACATCATGTGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
13829355 GCACA-CCCCCCGACCCCCCCGATCGTCAGAACCCTAATGCCGTCAGTCAGGTTCTCCGACAATG
585 GCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG---ATG
* ** *
13829419 CTCTGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAGGTGC
647 CTC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
13829484 TACCGCAACCCTCGGTCTGGTCTGATATTAGACT-GGAATGGAGTCCGTACGCTTAGACTGGGAA
711 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * * * *
13829548 TGAACTCTGTAGGCCTAAGTCAACTCATGAAAGGAGCGTACGGACGCTCAGCCTGCCAGAGGGGC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * *
13829613 AGGATGCGCAAGCCGAGGATC-AGCCGGGTCCCTCTCTACGTGCTTCCGATCT
841 GGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCAGATCC
* * * * * *
13829665 TGCTACCGTAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13829730 CCGATGAAACGAGCGGTCGAGCGGGCAGATACTACGCTGGCCAGAGAGACGGGATGCGGAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
13829795 TGGAACGATAGGGTGGTCA-GTGGGATTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
127 TGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
13829859 TTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
191 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
13829924 TCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACGTTTTGGGATTTTTTAAAATTTTTTCGG
256 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
13829989 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAACAA
321 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
13830054 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
386 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
13830119 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
451 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * * *
13830184 TCAAGGTTTGATGAGGGATAGGGAGCCACTATAAGGGCCAAGTACCAGCACCCATCGCATATCAT
516 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
13830249 GTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGCCAGGTTATCC--T
581 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
* * ** * * * *
13830311 G-T-GAC---GGTGCCCCAACAAAGAAAAATTTGGCACCAGCAAAAGCTCGAGCCCAGCATATGC
646 GCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
13830371 TGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGTAATGAACTCCATATGCTTAGACTGGGAA
711 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
13830436 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** * * * *
13830501 GGGATGCATAAGCTGGGGATTG-GCTGGGTCCCCCTCTACGTGCTGCCA-ATCC
841 GGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTG-CAGATCC
* * * * * *
13830553 TGGTGCCGTAACCCTCAGTTTGGTCCTATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13830618 CTGACGAAACAAGCGAACAGGCGAGCGGGCGGGCGGGTACTACGCTGGCCAGAGAGACGGGATGT
66 C---CG-----A-CGAA-A--CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
13830683 GTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
119 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* * * *
13830748 GCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGACTTCACCTGAAGTTTCGTGGCA
184 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** ** *
13830813 AGATGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATT
249 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
13830878 TTTTCGCAACGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTGTTGTTGGCATGCAC
314 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
13830943 AAAAAAATTCAGCTAAAAAATGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
379 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
13831008 TTTAAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
444 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
13831073 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
509 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
13831138 ACATCATGTGTGCACACCCCTCCC-GACCCCCCGATCATCGGAACCCCAAT---G-C---C--G-
574 ACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
** * *
13831192 --TCCG--G-T--A--AT-GTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCA
638 TCTCCGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * *
13831247 GCATGTGCTGTCGTAACCCTCGGTCCGGTTTGATCTTAGACTAGGAATGAACTCCATATGATTAC
703 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA-
* * *
13831312 G-CTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAATGAGCGTGCGGGCGCTC-GATCGG
767 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGG
* * * * *
13831375 CCAGAAGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGTGTGCTGCCGATCC
831 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCAGATCC
* * *** * * * * *
13831437 TACTGCCACAACCCTCGGTCCAATCCAATCTTAGACTAGAAATAAACGCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* **
13831502 CCGATGAAACCAACGAGCGGATGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
66 CCGACG--A--AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
13831567 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCGATGCCATTTT
127 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
13831632 TATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
192 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
13831697 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGA
257 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * *
13831762 AGGGGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAAT
322 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
13831827 TCAGCTAAAATCTTGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAAAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
** * *
13831892 ACTTTTGTGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
13831957 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATG
517 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
13832022 TGCGCATACCCCCCTGACCCCCCCGATC-TCTGGAACCCCAAT---G-C---C--G---T-C--T
582 TGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
** *
13832071 G---G-CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGC
646 GCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*** * * *
13832132 TGCCGCAACCCTCGGTCCATTCTGATATTAGATTGGGAATGAGCTCCGTATGCTTAGACTGGGAA
711 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
13832197 TGAACTCCGTATGCCTAAGTCAAGCAACGAAACGAGCGTGCGTGCTCTCAACCGGCCAGAGGGGC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * *
13832262 GGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCTGGTCC
841 GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCAGATCC
* * * * * **
13832314 TACTACCGTAACCCTCAGTCTGCTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13832379 CCGATGAAACGAGCATATGGACAGGCGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGC-----G---GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13832444 GCCGTGGATTGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
13832509 TTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAACCCTTCACGTGAAGTTTCATGGCAAGAT
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
13832574 GACTCGTTTTCAATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTTT
253 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
13832639 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGCATGCACAAAA
318 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
**
13832704 AAATTTTGCTAAAATA-TCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAA-TGT---C----
383 AAATTCAGCTAAAA-ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
13832759 C--A-A--TTACT-GCTACGGGCAGGC-AACCTG---GA--TC---TGCTCTTT-AGGGGGTGTG
447 CAGACACTTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13832808 AGTTCTCGAGGTTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
511 AGTTCTTGAGGTTT-GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
13832873 CATGCATGTGTGCGCACACCCCCGG-CCCCCCGATC--C---ACCCCAATGCCGCCAGTCAGATT
575 CAT-CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* ** *
13832932 CTCCGAAAATGCTCCGATGATGGTG--CCGGTGAAGAAAAATGCGGCACCAGTACATGCCCGA
639 CTCCG---ATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
13832993 CCAGCTTGCA
Statistics
Matches: 10723, Mismatches: 1283, Indels: 570
0.85 0.10 0.05
Matches are distributed among these distances:
853 8 0.00
856 1 0.00
857 25 0.00
858 69 0.01
859 15 0.00
860 1 0.00
861 2 0.00
863 1 0.00
865 1 0.00
866 17 0.00
867 5 0.00
869 1 0.00
870 1 0.00
871 2 0.00
872 1 0.00
873 7 0.00
874 36 0.00
875 12 0.00
876 909 0.08
877 436 0.04
878 105 0.01
879 7 0.00
880 203 0.02
881 326 0.03
883 32 0.00
884 256 0.02
885 678 0.06
886 310 0.03
887 296 0.03
888 200 0.02
889 148 0.01
890 92 0.01
891 126 0.01
892 293 0.03
893 237 0.02
894 397 0.04
895 300 0.03
896 1490 0.14
897 503 0.05
898 464 0.04
899 154 0.01
900 29 0.00
901 239 0.02
902 596 0.06
903 131 0.01
904 393 0.04
905 277 0.03
906 2 0.00
907 5 0.00
908 285 0.03
909 82 0.01
910 43 0.00
911 22 0.00
912 9 0.00
913 8 0.00
914 6 0.00
915 19 0.00
916 17 0.00
917 165 0.02
918 228 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGCTCG
ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCAGATCC
Found at i:13824183 original size:26 final size:26
Alignment explanation
Indices: 13824147--13824199 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13824137 TTGATCTGAT
13824147 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13824173 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13824199 C
1 C
13824200 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13825091 original size:26 final size:26
Alignment explanation
Indices: 13825055--13825107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13825045 CTGATCTGAT
13825055 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13825081 CTTAGACTGGGATTGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13825107 C
1 C
13825108 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13826886 original size:26 final size:26
Alignment explanation
Indices: 13826850--13826899 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13826840 CCAGTCTGAT
13826850 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13826876 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13826900 CGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13827780 original size:26 final size:26
Alignment explanation
Indices: 13827730--13827782 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13827720 CCCGTCCGAT
** **
13827730 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTACGAATGAACTCCGTATG
13827756 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
13827782 C
1 C
13827783 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:13828647 original size:26 final size:26
Alignment explanation
Indices: 13828618--13828671 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13828608 GATCCGATCT
*
13828618 TAGACTGGTAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13828644 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13828670 TA
1 TA
13828672 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:13832195 original size:26 final size:26
Alignment explanation
Indices: 13832159--13832210 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13832149 CATTCTGATA
* *
13832159 TTAGATTGGGAATGAGCTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13832185 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13832211 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13833612 original size:26 final size:26
Alignment explanation
Indices: 13833583--13833635 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13833573 CTGGTCCGAT
13833583 CTTAGACTGCGAATGAACTCCGCATG
1 CTTAGACTGCGAATGAACTCCGCATG
* *
13833609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGCATG
13833635 C
1 C
13833636 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGCATG
Found at i:13834395 original size:11 final size:11
Alignment explanation
Indices: 13834379--13834411 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
13834369 CAGTTAGGTT
13834379 CTCCGACGATG
1 CTCCGACGATG
13834390 CTCCGACGATG
1 CTCCGACGATG
13834401 CTCCGACGATG
1 CTCCGACGATG
13834412 GTGTCCCGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:13834530 original size:26 final size:26
Alignment explanation
Indices: 13834493--13834544 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13834483 CAGTCTGATA
*
13834493 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
13834519 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
13834545 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:13835425 original size:26 final size:26
Alignment explanation
Indices: 13835388--13835440 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13835378 CTGGTCTGAT
*
13835388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
13835414 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
13835440 C
1 C
13835441 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:13836324 original size:26 final size:26
Alignment explanation
Indices: 13836288--13836338 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13836278 GGTCCGATCA
13836288 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
13836314 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
13836339 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:13836465 original size:898 final size:895
Alignment explanation
Indices: 13833161--13843853 Score: 13680
Period size: 891 Copynumber: 12.0 Consensus size: 895
13833151 ACTTTGGATT
* *
13833161 AAATTTTTTCGGAAGGACTTTTGGCCCCAGACTTGGTAGACATGATTCC-TGTATTTTTGTTGGC
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA-TCCTTGTATTTTTGTTGGC
*
13833225 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTG
65 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
13833290 TCCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTTTTTAAG
130 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
13833355 GGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
195 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * * *
13833420 CATCACATATCATGTGCGTACACCCACCCCGACCCCTCCGATCATCGGAACCCCAATGCCGCTGG
260 CATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
*
13833485 TCAGGTTCT-C--CGA--------CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
323 TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * *
13833539 CCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGCGAATGAACTCC
388 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
13833604 GCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGGGTGCGGGCGC
453 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
13833669 TCAATC-GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATTGGGTCCGCTTCTGCGTGCTAT
518 TC-AGCAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGT
* *
13833733 CGATCCTGCTGCCGCAAGCCTCAG-CCTGGTAC-GATCTTAGACTGGGAATGAACTCCGTATGCC
582 CGATCCTGCTGCCGCAACCCTCGGTCC-GGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
13833796 TATGCCAACCGACGAAACGAGCGTGAG-GGCGAGCGGGCACTACGTCGACTAGAGAGATGGGATG
645 TAAGCCAACCGACGAAACGAGCG-G-GCGG-G-G-GGGCACTACGTCGGCCAGAGAGACGGGATG
* *
13833860 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAA
705 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
13833925 TGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGC
770 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * ** * ***
13833990 ATGACGACTCCTGTTCTATTTTTCACGATTTTGTAAACTTTTTGCGATTCAAAATTTTTTA
835 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* * * *
13834051 AAATTTTTTTGGAAGGGGTTTTGGCCCCAAACGTGGCAGACATGATCCTTGTATTTTTGTTGGCA
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* *
13834116 TGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGT
66 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
13834181 CCCCATTTTAGACACTTTAA-CGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGC
131 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
13834245 GGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
196 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
13834310 ATCACACATCTTGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCAGTT
261 ATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* * *
13834374 AGGTTCTCCGACGATGCTCCGACGATGCTCCGACGATGGTGTCCCGACGAACAAAAATGTGGCAC
325 AGGTTCTCCGACGATGCT-C--C---G----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCAC
** ** * * *
13834439 CAGCACATGGTCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCAGTCTGATATTAGACTGGGA
379 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* *
13834504 ATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTG
444 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * ** *
13834569 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATTGGCCAGGTCCCCCTCTG
509 TGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTG
* * ** * * *
13834634 CTTGCTGCCGATCCTGCTATCACAGCCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCA
574 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* *
13834699 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTGGGCGGTCACTATGTCGGCCAGAGAGACG
639 TATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GGG-GG-CACTACGTCGGCCAGAGAGACG
* * * **
13834764 GGATACGTAAGCCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGTGT
700 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
13834828 GCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCTA-GTG-AGCTT
765 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAG-TT
* * * **
13834891 TCATGGCAAGACGACTCTTTTTCTATTTTTCACGATTTTCAAAACATTTTACGGTTCATGATTTT
828 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTT
13834956 TTA
893 TTA
* * *
13834959 AAATTTTTTCAGAAGAAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* * *
13835024 TGCA-AAAAGAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTAT
66 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
13835088 CCCCATTTCAGACA-TATTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
131 CCCCATTTCAGACACT-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
13835152 GAGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACC
195 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * ** *
13835217 CTTCGCACACCATGTGCGCACA-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGATC
260 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* * * *
13835281 AGGTTCTCCGGCGATGCTCTGACGATGGTGCCCC-AGCGAAGAAAAATGCGACACCAGCACATGC
325 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
13835345 CCGAGCCCAGCATGTGCTGCCGCCACCATCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
389 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
13835410 TATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCTGGCGCT
454 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
13835475 TAGCCA-GCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACCTGCTGGT
519 CAG-CAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCT-GT
* * * * **
13835539 -GATCCTACTGCCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCTATATGCCTA
582 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
13835603 AGCCAACCGACGAAATGAGCGGGCGGGGGGGCACTACG-CTGGCCAGAGAGACGGGATGCGTAAG
647 AGCCAACCGACGAAACGAGCGGGCGGGGGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAG
* * ** * * *
13835667 CCGTAGATCGATAGGCTGACAGGTGGGTTTATGG-ACATCTTCATATTTATACGTGCCAATGCCA
711 CCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGCATGCCAATGCCA
*
13835731 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
775 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
13835796 GACTCATTTTCTATTTATCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTT
840 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* * *
13835852 AAATTCTTTT-GGAACGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
1 AAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
* * *
13835916 ATGCACAAAACAATTCAGCTAAAAAATGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
65 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
13835981 TCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
130 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * **
13836046 GGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGT
195 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
13836111 AATCGCACATCATGTGCGCACACACCCCCCCGGCCCCCCCGATCG-CAGGAACCCCAAAGCCGCC
260 CATCGCACATCATGTGCG--CACA-CCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCC
* * * *
13836175 GGTCAAGTTCTCCGACGATGCACCGGTGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACA
321 GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * * * *
13836240 TGCTCGAGCCCAGCATTTGCTACCGCAACCTTCGGTCTGGTCCGATCATAGACTGGGAATGAACT
386 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * *
13836305 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACAAAACGAGCGTGCGGGC
451 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
** * *
13836370 GCTCAGCAGGCCAGAGGGGCACGATGCGCAAGCC-AGGGATCGACCGGGTCCCCCTCTGTGTGCT
516 GCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCT
* * **
13836434 GTCGATCCTGGC-GCCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
580 GTCGATCCT-GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
13836498 CTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCGGGCAGTACGTCGGCCAAAGAGACGG
644 CTAAGCCAACCGACGAAACGAGCGGGC------G-GGG-GGGCACTACGTCGGCCAGAGAGACGG
* *
13836563 GATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATG
701 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * *
13836628 CCAATGCCATTTTTGTGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCAGGTGAAGTTTCA
766 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** *
13836693 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGATACTTTTTGCGGTTCGGGATTTTTTA
831 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
*
13836758 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAGATGATCCTTGTATTTTTGTTGGCA
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
** * *
13836823 TGCACAAAGCAATTCAGCCAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGT
66 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
13836888 CTCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGG
131 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
13836953 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCC
196 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * **
13837018 ATCGCACATCATGTGCGTACACCCCCCGACCCCCCCGATCGTCAGATCCCTAATGCCATCGGTCA
261 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* *
13837083 GG---T-------T-CTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCC
326 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
13837137 GAGCCCAACATGTGCTGCCGCAACCCTCGGTTCAGTTCGATCTTAGACTGGAAATGAACTCCGTA
391 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
13837202 TGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTTAACCCACGAAACGAGTGTACGGGTGCTCA
456 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * **
13837267 GCCGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGATCGGGTCCCACTCTTTGTGCTGTCGAT
521 GCAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGAT
* * * ** * * *
13837332 CCTGCTACCACAACCCTCAGTTTGGTCCGATCTTAGAGTGTGAATGAACTCCGTATGCCTAAGCC
586 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
13837397 AACCGACGAAATGAGCGGACGGGCGGGCGGGCGATCACTACGCCAGCCAGAGAGACGGGATGCGC
651 AACCGACGAAACGA---G-CGGGCGGG-GGG-G--CACTACGTCGGCCAGAGAGACGGGATGCGC
* *
13837462 AAGCCGTGGATCGATAGGGTGGAAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGC
708 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
13837527 CATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
773 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
13837592 AGGACTCGTTTTCTATTTTTCACGATTTTCAAAACATTTTACGGTTCGGGATTTGCTA
838 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* ** *
13837650 AAATTTTTTCAGAAGGAGTTTTGGCATCAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGCA
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* *
13837715 TGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGT
66 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
13837780 CCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCTCTAAAATCTCAAATGCTCTTTAA-G
131 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
13837844 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCC
196 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
13837909 ATCGCACATCATGTGCGCACACCCCCCCGGCGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
261 ATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* * * * *
13837974 AGGTTGTCCGACGATGCTCCGACGATGGTGCCCCGATGATGAAAAATGCGACACCAGCACATGCC
325 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * *
13838039 CAAGCCCAGCATGTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGT
390 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
13838104 ATGCTTAGAC-GAGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCAT------G--
455 ATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
13838160 CATC---TC------G-GGGAT-CG--A--C-----T-G-T---GTCCCCCTCTACATGCTGTCA
519 CAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
* * * * * *
13838200 ATCCTGCTACCGTAACCCTCGGTTCGGTCTAATCATAGACTTGGAATGAACTCCGTATGCCTAAG
584 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
13838265 CTAATCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
649 CCAACCGACGAAACGAGCGGGC--G-GGG-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
13838330 GCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCATGCCAATGCCA
710 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
13838395 TTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGAT
775 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * *
13838460 GACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTGTGGTTCAGGATTTTTTA
840 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* * * * *
13838516 AACTTTTTTCGGAAGGAGTTTTGGCCCCAAGCATGGTAGACGTGATCCTTGTATTTTGGTTGGCA
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* * *
13838581 TGCA-AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGG
66 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
13838645 CCCCACTTCAGACACTTTAATGGCTACTGGCAGCAAGCCTATAAAATCTCAAATGCTCTTTAAGG
131 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * * ** *
13838710 AGGTGTGAGTTCTCGATGTTTGATGAGAGATA-GGGGCCAATATGAGGAACAAGTACCAGCAGCC
196 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * ** * * *
13838774 TTCGCACATCATGTG-GACACACCCCCCCGACCCCCCCGATCACCGGAACCCCACTGCCGTCAGT
261 ATCGCACATCATGTGCG-CACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
* * * * * * *
13838838 CAAGTTCTCCGGCAATGCTTCGACGATGGTGCCTCGACGAAGAAAAATGCGACACCAGCACATGC
324 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
** * * * * * *
13838903 CCGAGCGTAGCATGTGCTGCCGCAAGCATCAGTCTGGTCCGATCTTAGACTGAGAATGAACTCCA
389 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * * *
13838968 TTTGCTTAGACAGGGAATGAACTTCGTTTGCCTAAGTCAACCCATGAAACGAAC-TAGCGGGCGC
454 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-GCGGGCGC
* ** * * * * *
13839032 TCAGTC-GGCCAGAGGGGCAGGATGCGCAAGTTGGGGATCGGTCGGGTCCTCCTCTGCCTGCTGC
518 TCAG-CAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGT
* * * * * * *
13839096 CGATCCTGCTGCCACAACCTTCGGTCTGATCTAATCATAGACTAGGAATGAACTCCGTATGCCTA
582 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
13839161 AGCCAACCGACGAAACGAGCGGACGGACGGGTGGGCACTACG-CTGTCCA-AGGAGACGGGATGC
647 AGCCAACCGACGAAACGAGC-G--GG-CGGGGGGGCACTACGTC-GGCCAGA-GAGACGGGATGC
* * * * *
13839224 GCAAACCGTGGATCGATTGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCAAAT
706 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
13839289 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
771 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
13839354 AGACGACTCGTTTTCTATTTATCATGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTTT
836 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGA-TTTTTTA
* * *
13839415 AAATTCTTTT-GGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCCTGTATTTTTTTTGGC
1 AAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
*
13839479 ATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
65 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
13839544 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
130 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * ** *
13839609 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAACAGCCAATTACCAGCACC
195 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
13839674 CATCGCACAACATGTGCACACACCCCCCGGCCCCCCCTATCGTCGGAACCCCAATACCGCCGGTC
260 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* * * * *
13839739 AAGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCAACGAAGAAAAATG-GGTCACCAGCGCATGC
325 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG-CACCAGCACATGC
** * * * *
13839803 CCGAGCCCAGCATGTGCTATCGCAACCCTCAGTCCAGTCCGATCTTAGACCGGGAATGAACTCCA
389 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* ** *
13839868 TATGCTTAGACCGGGAATGAACTCTATATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCGCT
454 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * *
13839933 CAGTC-GGCCGGAGGGGCGGGATGTGCAGGCCGAGGATCGATCGGGTCCCCCTTTACGTGCTGTT
519 CAG-CAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTC
* * * * *
13839997 GATCCTGCTGCTGTAACACTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTACGTATGCCTAA
583 GATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
13840062 GCTAACCGACGAAATGAGCGGGC----GGGCACTATGTCGGCCAGAGAGACGAGATGCGCAAGTC
648 GCCAACCGACGAAACGAGCGGGCGGGGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * **
13840123 GTGGATCGATAGGGTGGTAGGTGGGTTTAGCCGCATCTTCATATTTCTGTGTGCCAATGCCATTT
713 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
13840188 TTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCATCACGTCAAGTTTCATGGCAGGACGAC
778 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** * **
13840253 TCGTTTTCTCTTTTTCACAATTTTTGAAACTTTTTGTGGTTTC-AAATTTTTTA
843 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGG-TTCGGGATTTTTTA
* * *
13840306 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAGACATGATCCTTTTATTTTTGTTAGCA
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* * *
13840371 TGCACAAAAACATTCAGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTAAAAAAAGTGT
66 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
13840436 CCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
131 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * **
13840501 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGTCAATATAATGGCCATTTACCAGCACCC
196 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
13840566 ATTGCACAACATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCA
261 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * *
13840631 GGTTCTCCAACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCC
326 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * * *
13840696 GAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCAGTCTGATCTTGGACTGGGAATAAACTCCGTA
391 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
13840761 TGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCA
456 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
13840826 GTCA-GCCAGAGGGGTGGGATGCACAGGCCGAGGATCGATTGGGTCCCCCTTTACGCGCTG-CTG
521 G-CAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-G
* * * ** * *
13840889 ATACTGCTGCTGTAACGTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAG
584 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * *
13840954 CCAACCGACGCAACGAGCGGGC----AGGCACTACGCCAACCAGAGAGACGGGATGCGCATGTCG
649 CCAACCGACGAAACGAGCGGGCGGGGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* **
13841015 TGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
714 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
13841080 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTCAAGTTTCATGGCAGGACGACT
779 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** ** * **
13841145 CGTTTTCCCTTTTTCACGATTTTTGAAACTTTTTGTGGTTTC-CAATTTTTTA
844 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGG-TTCGGGATTTTTTA
* * *
13841197 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGCAGACATGATCCCTT-TATTTTTGTTGCC
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT-CCTTGTATTTTTGTTGGC
** *
13841261 ATGCACAAAAGCATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
65 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
13841326 TCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAG
130 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
13841391 GGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACC
195 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * **
13841456 CATCGCACATCATGTGCGCACACCCCCCGGTCCCCCTGATCGTCGGAACCCCAATGCCATCGGTC
260 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
** * * * * *
13841521 AGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACTAGCACCTGCC
325 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * *
13841586 CAAGCCCAGCATGTGCTGCCGGAACCCTCGATCCAGTTCGATCTTAGACTGGGAATCAACTCCGT
390 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
*
13841651 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTC
455 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
13841716 AGCCA-GCTAGAAGGG-GGGATGCGCAAGCAGGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCG
520 AG-CAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
* * * *
13841779 ATCCTGCTGTCGCAACCCTCGGTCCAGT-TCGATCTTAGACTAGGAATGAACTCTGTATGCCTAA
584 ATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
13841843 GCCAATCGACAAAACGAGCGGGTGGGAGGGCGGGCACTACG-CTGACCAGAGAGACGGGATGCGC
648 GCCAACCGACGAAACGAGC-GG-GCG-GGG-GGGCACTACGTC-GGCCAGAGAGACGGGATGCGC
* *
13841907 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGC
708 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
** *
13841972 CATTTTTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAG
773 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
13842037 ATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTA
838 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* ** * *
13842095 AAATTTTTACGGAAGGAGTTTTGGATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTTGCA
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* * *
13842160 TGTAGAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
66 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
13842225 CCCCATTTCAGACACCTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
131 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
13842290 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTAGCAGCACCC
196 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * ** * * **
13842354 ATTGTACATCATGTGCGCACACCCCCC-GATCCCCCGATTGTCGAAACCCCAATGCTACCGGTCA
261 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * ** *
13842418 AGTTCTCCGATGATGCTCCGGGGATGGTGCCCCGGTGAAGAAAAGTGCGGCACCAGCACATGCCC
326 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
13842483 -ACACCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTCGGAATGAACTCCGT
391 GA-GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
13842547 GTGCTT----TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTA
455 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * **
13842608 AGCTGGCCAGAGGGGTGGGATGCGTAAGTCGTGGATCG-GCTGGTCCCCCTCTATGTGCTGTCGA
520 AGCAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGA
* * * ** * * * *
13842672 TCCTACTACCACAACCCATTTGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCAAAG
585 TCCTGCTGCCGCAACCC-TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
13842737 CCAACCGACGAAACGAGCGGGC----GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTCA
649 CCAACCGACGAAACGAGCGGGCGGGGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * **
13842798 TGGATCGGTAGGGTGGTAGGTGGGGTTAGGCAAATCTTCATATTTCTGGGTGCCAATGCCATTTT
714 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
13842863 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTCCATGGCAAGACGACT
779 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
13842928 TGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTCA
844 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* * * * *
13842980 AAATTTTTTCAGAAGGAGTTTTAGCTCCAAACTTGGTAGACGT-ATCCTTGTATTTTTATTGGCA
1 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* * * *
13843044 TGCAAAAAAAAATTTCAGCTAAAAACTGGAAGTATACAAGATTTTGTGACCATTTGAAAAAAATG
66 TGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
13843109 TCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAG
130 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
13843174 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAACGGCCAAGTACCAGCACC
195 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
**
13843239 CATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTTGGT
260 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
* * * ** *
13843303 CAGGTTCTCCGATGATGCTCCTGTGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGC
324 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* *
13843368 CCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCG
389 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *
13843433 TATGCTTAGACTGGGAATGAAATCCGTATGGCTAAGTCAACCCATGGAACGAGCGTGCGGGTGCT
454 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * * **
13843498 CAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGTGGATTGGT-TGGTCCCCTTCTGCGTGCTACCG
519 CAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
* * * * * *
13843562 TTCCTGCTACCGCAACCCTCAGTTCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAG
584 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** *
13843627 GCAACCGACGAAAGGAGCGGGC----GGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCG
649 CCAACCGACGAAACGAGCGGGCGGGGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
13843688 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTT
714 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * *
13843753 TATGGCGTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCTAGACGACT
779 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
13843818 CGTTTTCCATTTTTCACGATTTTCAATACTTTTTGC
844 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGC
13843854 AGTTGGTATG
Statistics
Matches: 8619, Mismatches: 1002, Indels: 364
0.86 0.10 0.04
Matches are distributed among these distances:
864 2 0.00
865 350 0.04
866 293 0.03
867 1 0.00
868 3 0.00
869 4 0.00
870 84 0.01
871 1 0.00
873 3 0.00
874 2 0.00
875 1 0.00
876 1 0.00
882 2 0.00
883 4 0.00
884 32 0.00
885 391 0.05
886 51 0.01
887 191 0.02
888 8 0.00
889 132 0.02
890 497 0.06
891 1509 0.18
892 1047 0.12
893 260 0.03
894 202 0.02
895 10 0.00
896 429 0.05
897 74 0.01
898 1009 0.12
899 68 0.01
900 473 0.05
901 46 0.01
902 3 0.00
903 184 0.02
904 5 0.00
905 9 0.00
906 455 0.05
907 124 0.01
908 305 0.04
909 352 0.04
910 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGAT
CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCGGGGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
Found at i:13837218 original size:26 final size:26
Alignment explanation
Indices: 13837178--13837227 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13837168 TCAGTTCGAT
13837178 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
13837204 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
13837228 CGCCTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13838119 original size:26 final size:26
Alignment explanation
Indices: 13838081--13838133 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13838071 CCGATCCGAT
*
13838081 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13838107 CTTAGAC-GAGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
13838133 C
1 C
13838134 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13839875 original size:26 final size:27
Alignment explanation
Indices: 13839846--13839903 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
13839836 CCAGTCCGAT
13839846 CTTAGACCGGGAATGAACTCCATATG-
1 CTTAGACCGGGAATGAACTCCATATGC
*
13839872 CTTAGACCGGGAATGAACTCTATATGC
1 CTTAGACCGGGAATGAACTCCATATGC
13839899 CTTAG
1 CTTAG
13839904 TCAACCCACG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (27 bp):
CTTAGACCGGGAATGAACTCCATATGC
Found at i:13841664 original size:26 final size:26
Alignment explanation
Indices: 13841628--13841680 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13841618 CCAGTTCGAT
13841628 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
13841654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
13841680 C
1 C
13841681 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:13843447 original size:26 final size:26
Alignment explanation
Indices: 13843411--13843462 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13843401 CCGGTCCGAT
* *
13843411 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
13843437 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
13843463 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:13844962 original size:26 final size:26
Alignment explanation
Indices: 13844933--13844985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13844923 TCAGTCCGAT
*
13844933 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
13844959 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
13844985 C
1 C
13844986 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13846442 original size:26 final size:26
Alignment explanation
Indices: 13846413--13846465 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13846403 CCAGTCTGAT
13846413 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13846439 CTTAGACTGGGAATTAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13846465 C
1 C
13846466 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13848211 original size:26 final size:26
Alignment explanation
Indices: 13848175--13848227 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13848165 TCGGTCTGAC
*
13848175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13848201 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13848227 C
1 C
13848228 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13850615 original size:234 final size:238
Alignment explanation
Indices: 13850204--13850639 Score: 628
Period size: 234 Copynumber: 1.8 Consensus size: 238
13850194 TGCATGGTAC
* * *
13850204 CGATCCTACTACCGTAACCCTCGGTCCGATCTGACCTTAGACTGGGAATGAACTCCATATGCCTA
1 CGATCCTACTACCATAACCCTCGATCCGATCCGACCTTAGACTGGGAATGAACTCCATATGCCTA
* * * * * *
13850269 CGCTAACCGATGAAACAAGCGGGCGGACGAGTGGGTGGGCGGGAACTATGCCGGCCAGAGAGATG
66 AGCCAACCGACGAAACAAGCGGGCGGA-GAGCGGGTGGGC--G-ACTACGCCGGCCAGAGAGACG
*
13850334 AGATGCGCAAGCCATGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
127 AGATGCGCAAGCCATGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
13850399 GCCAATGGGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGT
192 GCCAATGGGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGT
* * * * *
13850446 CGATCCTGCTACCATAACCCTCGATCTGATCCGATCTTAGACTGGGAATTAACTCCTTATGCCTA
1 CGATCCTACTACCATAACCCTCGATCCGATCCGACCTTAGACTGGGAATGAACTCCATATGCCTA
* * *
13850511 AGCCAACGGACGAAACGAGCGGG-GG-G-GCGGGTGGGC-ACTACGCCGGCCAGAGAGACGGGAT
66 AGCCAACCGACGAAACAAGCGGGCGGAGAGCGGGTGGGCGACTACGCCGGCCAGAGAGACGAGAT
* *
13850572 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
131 GCGCAAGCCATGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
13850637 ATG
196 ATG
13850640 CCATTTTTAT
Statistics
Matches: 174, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
234 87 0.50
238 9 0.05
239 1 0.01
241 2 0.01
242 75 0.43
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.21
Consensus pattern (238 bp):
CGATCCTACTACCATAACCCTCGATCCGATCCGACCTTAGACTGGGAATGAACTCCATATGCCTA
AGCCAACCGACGAAACAAGCGGGCGGAGAGCGGGTGGGCGACTACGCCGGCCAGAGAGACGAGAT
GCGCAAGCCATGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
ATGGGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGT
Found at i:13851227 original size:26 final size:26
Alignment explanation
Indices: 13851191--13851243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13851181 GTGGTCCGAT
*
13851191 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13851217 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13851243 C
1 C
13851244 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13852128 original size:26 final size:26
Alignment explanation
Indices: 13852099--13852151 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13852089 CTGGTCCGAT
13852099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13852125 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13852151 C
1 C
13852152 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13852291 original size:908 final size:898
Alignment explanation
Indices: 13850424--13853881 Score: 4363
Period size: 908 Copynumber: 3.9 Consensus size: 898
13850414 GGGGATCGGC
* * ** * * * * *
13850424 CGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCATAACCCTCGATCTGATCCGATCTTAGACT
1 CGGGTCCCCTTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGGTCTGGTCTGATCTTAGACT
* ** * * *
13850489 GGGAATTAACTCCTTATGCCTAAGCCAACGGACGAAACGAGCGGG-GG-G--GCGGGTGGGCACT
66 GGGAATGAACTCC-TATGCCT-AGCTGAC-CATGAAA-GAGCGGGCGGCGAAGCGGGCGGGCACT
*
13850550 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
127 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
13850615 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
192 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
13850680 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACATTT
257 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * *
13850745 T-CTGGTTCGGGATGTTTTAAAATTTTTTTG-GGAGTTTTGGCCCCAAACTTGCTAGACGTGATC
322 TGC-GGTTCGAGATTTTTTAAAATTTTTTTGAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
13850808 CTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGGG
386 CTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
13850873 ACCATTTGAAAAAATTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAAT
451 ACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAAT
* *
13850938 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAG
516 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
13851002 GGCCAAGTACCAGCACCCATCGCACATCATGTC-CGCACACCCCCCGGCCCCCCCGATCGCCGGA
581 GGCCAAGTACCAGCACCCATCGCACATCATG-CGCGCACACCCCCCGACCCCCCCGATCGCCGGA
* * * *
13851066 ACCCCAATGCCGTCT-GTCAGGTTCTCCGACGATGGTCCGGCAATGGTGCCCCAACGAAGAATAA
645 ACCCCAATGCCGTCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAA
* ** *
13851130 TGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCATAACCCTCGGTGTGGTCCGATCTTA
710 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTA
* *
13851195 GACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
775 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * *
13851260 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGTGGGATGCGCAAGCCGGGGATCGAT
840 AACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGAGCGGGATGCGCAAGCTGGGGATTGAT
* * * * * * * *
13851319 CGGGTCCCCCTCTGCATGGTACCGATCCTACTACCGCAACCCTCGGTCTGGTCGGACCTTAGACT
1 CGGGTCCCCTTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGGTCTGGTCTGATCTTAGACT
13851384 GGGAATGAACTCCATATGCCTATGCTGACCGATGAAACGAGCGGGCAGGCGAACGGGCGGGCGGG
66 GGGAATGAACTCC-TATGCCTA-GCTGACC-ATGAAA-GAGCGGGC-GGCGAA---GCGGGCGGG
* * * * *
13851449 CATTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGTGTTTAG
123 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
13851514 GTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
188 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
13851579 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTGTATTTTTCATTATTTTTGAAAC
253 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-
* * * *
13851644 CTTTTAG-GGTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCACCAAACTTGGTAGAC
317 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG--AGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
13851708 GTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAACTTGAAGTGTACAACAT
380 GTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * *
13851773 TTTGTGACCATTTGAAAAAAGTGTCCCCGTTTTAGACATTTTAATGGCTACTGGCAGCAAACCTG
445 TTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAG
* * * *
13851838 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGATGGATAGGGGGCTAA
510 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
13851903 TATAAGGGCCAACTATCAGCACCCGTCGCACATCATGCGCGCACACCCCTCCGGCCCCCTCGATC
575 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCC-CCGACCCCCCCGATC
* * * * ** ** * *
13851968 GCCAGATCCCTAATGTCGTC-GGTCAGGTTCTTTGTTGATGCTCCGGCGATGGTGCCCCGACGAA
639 GCCGGAACCCCAATGCCGTCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAA
*
13852032 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCG
704 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCG
13852097 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
769 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
13852162 CCATGAAACGAGCGGGCGGGCGATCAACCGGCTAGAGGGGCGGGATCCACAAGCTAGGGATTGGT
834 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGAGCGGGATGCGCAAGCTGGGGATTGAT
* * * * * *
13852227 CGGGTCCCCTTCAGCGTGCTATCGATCTTGCTGCCACAACACTTGGTCTGGTCTGATGTTAGACT
1 CGGGTCCCCTTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGGTCTGGTCTGATCTTAGACT
* * ** * * *
13852292 GGGAATGGACTCTGTATGCCTAAGCCAATCAACGAAATGAGCGGGCGG-G-A--GGGCAGGCACT
66 GGGAATGAACTC-CTATGCCT-AGCTGA-CCATGAAA-GAGCGGGCGGCGAAGCGGGCGGGCACT
* *
13852353 GCGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
127 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * **
13852418 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCATCCCTTAA
192 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
13852483 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTATGAAACTTTT
257 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * *
13852548 TGCGGTTTGAGATTTTTTAAAATTTTTTTTGAGGAGTTTTGGTCCC-GACTTGGTAGATGTGATC
322 TGCGGTTCGAGATTTTTTAAAA-TTTTTTTGAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
13852612 TTTGTATTTTTGTTGGCATGCACAAAACAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTG
386 CTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
13852677 ACCATTTGAAAAAATTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAAT
451 ACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAAT
*
13852742 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAA
516 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
13852807 GGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACACCCCCCGA-CCCCCCGATCGTCGGAA
581 GGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGACCCCCCCGATCGCCGGAA
* * * *
13852871 CCCCAATGCCG-CTAGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCAACGAAGGAAAAT
646 CCCCAATGCCGTCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAAT
* * * * *
13852935 GCGGCACCAGCAC-TGCCCGAGCCTAGCATGTGCTATCGTAACCCTCGGTCAGGTTCGATCTTAG
711 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAG
* * * *
13852999 ACTGGGAATGAACTCGGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAA
776 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * * * *
13853064 ATGAGCGTGTGGGTGCTCAGTCGGCTAGAGGCA-CGGGATGCGCAAG-TCGGGGA-TCAA
841 ACGAGCGTGCGGGCGCTCAGCCGGCTAGAGG-AGCGGGATGCGCAAGCT-GGGGATTGAT
* * ** *
13853121 CTGGGTCCCCCTT-TGCGTGCTGCTGATCCTGCTACCACAACCCTTGGTCCAGTCTGGTCTTAGA
1 C-GGGT-CCCCTTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGGTCTGGTCTGATCTTAGA
* **
13853185 -TAGGGAATGAACTCC---G--TA--TG-CC-T---A-A----GC--C-AATC--GATGG-A--A
64 CT-GGGAATGAACTCCTATGCCTAGCTGACCATGAAAGAGCGGGCGGCGAAGCGGGCGGGCACTA
* *
13853224 ---C-G--AGCG-GACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
128 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
13853282 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAA
193 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
13853347 CCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
258 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * *
13853412 GTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGCAGATGTGATC
323 GCGGTTCGAGATTTTTTAAAATTTTTTT-G-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
13853477 CTTGC-ATTTTTGTTGGCATGCACAAAAGAAA-TCAGCTAAAAATTCAAAGTGTATAAGATTTTG
386 CTT-CTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
13853540 TGGCCATTTGAAAAAAGTGTCC-CTATTTCTGACACTTTAATGACTACTGGCAGCAAACCTGTAA
449 TGACCATTTGAAAAAAGTGTCCAC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAA
* * * * *
13853604 AATCTCAAACGCACTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATATGGGGCCAAAAT
513 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
13853669 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTC
578 AAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACA-CCCCCCGACCCCCCCGATCGCC
* ** * * *
13853734 GGAACCCCAATGCC-ACTGGTCAGGTTCTTAGACGATGGTCTGACGATGGTGCCCCGACGAAGAA
642 GGAACCCCAATGCCGTCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAA
* * * * ** * *** *
13853798 AAATTCAGCACCAGCACGTTCCCGAGCCCAATATGTGCTGCCGCAACCCTCGGTCCAATCTGATC
707 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATC
*
13853863 TTAGATTGGGAATGAACTC
772 TTAGACTGGGAATGAACTC
13853882 GGCATGCCTA
Statistics
Matches: 2244, Mismatches: 275, Indels: 115
0.85 0.10 0.04
Matches are distributed among these distances:
862 7 0.00
863 191 0.09
864 18 0.01
865 224 0.10
866 11 0.00
867 85 0.04
868 53 0.02
872 1 0.00
873 4 0.00
874 2 0.00
878 1 0.00
880 1 0.00
884 1 0.00
888 1 0.00
889 1 0.00
891 1 0.00
894 5 0.00
895 291 0.13
896 82 0.04
897 5 0.00
898 232 0.10
899 19 0.01
900 203 0.09
901 7 0.00
903 214 0.10
904 4 0.00
905 1 0.00
906 198 0.09
907 53 0.02
908 326 0.15
909 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (898 bp):
CGGGTCCCCTTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGGTCTGGTCTGATCTTAGACT
GGGAATGAACTCCTATGCCTAGCTGACCATGAAAGAGCGGGCGGCGAAGCGGGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
GTTCGAGATTTTTTAAAATTTTTTTGAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCA
ATGCCGTCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTGCGGGCGCTCAGCCGGCTAGAGGAGCGGGATGCGCAAGCTGGGGATTGAT
Found at i:13853031 original size:26 final size:26
Alignment explanation
Indices: 13852995--13853045 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13852985 AGGTTCGATC
*
13852995 TTAGACTGGGAATGAACTCGGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
13853021 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13853046 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:13854096 original size:26 final size:26
Alignment explanation
Indices: 13854060--13854112 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13854050 CTGGTCCGAT
*
13854060 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13854086 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13854112 C
1 C
13854113 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13854990 original size:26 final size:26
Alignment explanation
Indices: 13854961--13855013 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13854951 CTGGTCCGAT
*
13854961 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13854987 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13855013 C
1 C
13855014 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13855844 original size:901 final size:900
Alignment explanation
Indices: 13854034--13855943 Score: 2720
Period size: 901 Copynumber: 2.1 Consensus size: 900
13854024 GCCATTTTTA
* **
13854034 TGCCGCAACCCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAA
1 TGCCGCAACCCTCAGTCTGGTCCGATCTTAGAATGGGAATGAACTCTGTATGCTTAGACTGGGAA
* *
13854099 TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC
66 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GACGCTCAACCGGCCAGAGGGGC
* * * * *** *
13854164 GGGTTGCGCAAGCTAGGGATCAATCGGGTCCCCCTCTGTGTGCTACCGATCCTACTACTGCAACC
130 GGGATGCGCAAGCGAGCGATCAATCGGGTCCCCCACTACATGCTACCGATCCTACTACCGCAACC
* ** * * * * * *
13854229 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAGCTCTGTATGCCTAAGCGAAATGATGAAACGAG
195 CTCGATCTGGTCCAATCTTAGACTGGGAATGAGCTCCGAATGCCTAAGCCAAACGACGAAACAAG
* * * * **
13854294 CGGGCAGGTCGGCAGACGGGCACTACGTCAGCTAGAGAGATGGGATACGCAAGCTGTGGATCGAT
260 CGGGCAGGACGGCAGACGGGCACTACGTCAGCAAGAGAGACGAGATACGCAAGCCATGGATCGAT
* * * *
13854359 AGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
325 AGGGTGATAGGTGGGTTTAAGCACATCTGCATACTTATACGTGCCAATGCCATTTTTATGGCTTG
*
13854424 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
390 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * **
13854489 TTTTTCATGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTTAAATTTTTTTGGAAGGGTTTTT
455 TTTTTCATGATTTTTGAAACTTTTTACAGATCGGGATTTTTTAAAAATTTTTTGGAAGGAATTTT
* *
13854554 GGCCCCAAACTTCGTAATGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
520 GGCCCCAAACTTCGTAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
13854619 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAATAAGTGGCCCCATTTCAGACACTTTAATGG
585 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGGCCCCATTTCAGACACTTTAATGG
** *
13854684 CTACTAGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTATGTTCTCGAGGTTTGA
650 CTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTATATTCTCGAGGTTTGA
13854749 TGAGGGACAAGAGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCACACC
715 TGAGGGACAAGAGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCACACC
* ** * *
13854814 CCCCGGCCCCCCGATCGTCGGAACACCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTAGGCGA
780 CCCCGGACCCCCGATCACCGGAACACCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCAGACGA
* * * * *
13854879 TGGTGACCTGGCGAACAAAGATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGT
845 TGGTGACCCGACGAACAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
13854935 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
1 TGCCGCAACCCTCAGTCTGGTCCGATCTTAGAATGGGAATGAACTCTGTATGCTTAGACTGGGAA
* *
13855000 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGACGCTTAGCCGGCCAGAGGGGCG
66 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGACGCTCAACCGGCCAGAGGGGCG
* * ** *
13855065 GGATGCGCAAGCCGA-CGATCGA-CTGGGTCCCCCACTACATGCTGCCGATCCTGGTACCGCATC
131 GGATGCGCAAG-CGAGCGATCAATC-GGGTCCCCCACTACATGCTACCGATCCTACTACCGCAAC
* * *
13855128 CCTCGATCTGGTCCAATCTTAGATTGGGAATGAGCTCCGAATGCCTATGCCAACCGACGAAACAA
194 CCTCGATCTGGTCCAATCTTAGACTGGGAATGAGCTCCGAATGCCTAAGCCAAACGACGAAACAA
* * ** * * * *
13855193 GTGGG-TGGACGGGTGGGCGGGCGCTACGTC-GCCAAGGGAGACGAGATGCGCAAGCCATGGATC
259 GCGGGCAGGAC-GGCAGACGGGCACTACGTCAG-CAAGAGAGACGAGATACGCAAGCCATGGATC
* *
13855256 GATAGGGTGGTAGGTGGGTTTAATCACATCTGCATACTTATACGTGCCAATGCCATTTTTATGGC
322 GATAGGGTGATAGGTGGGTTTAAGCACATCTGCATACTTATACGTGCCAATGCCATTTTTATGGC
13855321 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
387 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
13855386 CTATTTTTCATGATTTTTGAAACTTTTTACGGATCGGGATTTTTTAAAAATTTTTTGGAAGGAAT
452 CTATTTTTCATGATTTTTGAAACTTTTTACAGATCGGGATTTTTTAAAAATTTTTTGGAAGGAAT
*
13855451 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TGTGGCATGCACAAAAAAATTCAGC
517 TTTGGCCCCAAACTTCGTA-ACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGC
* * * *
13855515 TAAAAACTCGAAGTTTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTT
580 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGGCCCCATTTCAGACACTTT
* * *
13855580 AATGGCTACTGGCAACAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGA-ATTCTTGAG
645 AATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-ATATTCTCGAG
* * * * *
13855644 GTTTGATGAGGG-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCCCATCATGTGTG
709 GTTTGATGAGGGACAAGAGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTG
* * * * **
13855708 CACCCCCCCCGGAACCCCCGATCACCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCT
774 CACACCCCCCGG-ACCCCCGATCACCGGAACACCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * *
13855773 CCGACGATGGTGACCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
838 CAGACGATGGTGACCCGACGAACAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
** *
13855836 TGCCGCAACCCTCAGTCCAGTCCGATCTTAGAATGGGAATGAACTCTGTATGCTTAGA-TCGAGA
1 TGCCGCAACCCTCAGTCTGGTCCGATCTTAGAATGGGAATGAACTCTGTATGCTTAGACT-GGGA
* * *
13855900 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
65 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA
13855944 GCGGGCGGGC
Statistics
Matches: 893, Mismatches: 107, Indels: 18
0.88 0.11 0.02
Matches are distributed among these distances:
899 5 0.01
900 421 0.47
901 466 0.52
902 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
TGCCGCAACCCTCAGTCTGGTCCGATCTTAGAATGGGAATGAACTCTGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGACGCTCAACCGGCCAGAGGGGCG
GGATGCGCAAGCGAGCGATCAATCGGGTCCCCCACTACATGCTACCGATCCTACTACCGCAACCC
TCGATCTGGTCCAATCTTAGACTGGGAATGAGCTCCGAATGCCTAAGCCAAACGACGAAACAAGC
GGGCAGGACGGCAGACGGGCACTACGTCAGCAAGAGAGACGAGATACGCAAGCCATGGATCGATA
GGGTGATAGGTGGGTTTAAGCACATCTGCATACTTATACGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTACAGATCGGGATTTTTTAAAAATTTTTTGGAAGGAATTTTG
GCCCCAAACTTCGTAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGGCCCCATTTCAGACACTTTAATGGC
TACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTATATTCTCGAGGTTTGAT
GAGGGACAAGAGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCACACCC
CCCGGACCCCCGATCACCGGAACACCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCAGACGAT
GGTGACCCGACGAACAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
Found at i:13858866 original size:26 final size:26
Alignment explanation
Indices: 13858837--13858887 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13858827 TGGTCCGATC
* *
13858837 TTAGATTGGGAATGAACTCTGTATGA
1 TTAGATTGGGAATAAACTCCGTATGA
13858863 TTAGATTGGGAATAAACTCCGTATG
1 TTAGATTGGGAATAAACTCCGTATG
13858888 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGATTGGGAATAAACTCCGTATGA
Found at i:13859744 original size:26 final size:26
Alignment explanation
Indices: 13859715--13859764 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13859705 CCCGTTCGAT
*
13859715 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTACGTACG
13859741 CTTAGACTGGGAATGAACTACGTA
1 CTTAGACTGGGAATGAACTACGTA
13859765 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTACG
Found at i:13860656 original size:711 final size:708
Alignment explanation
Indices: 13859095--13861175 Score: 2618
Period size: 711 Copynumber: 2.9 Consensus size: 708
13859085 GCGCTACGTC
* * **
13859095 GGCCAGGGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
13859160 CATACTTATATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * ** *
13859225 CACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTACGG
* * * *
13859290 ATCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
196 TTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * * * *
13859355 TATTTTTGTTGGTATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCA
261 CATTTGTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTCTGACCA
* * * * *
13859420 TTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCCGTAAAATCTCA
326 TTTGAAAAAAGAGTACCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
13859485 AATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA-GGGGGCCAATATAATGGC
391 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-AGGGGGGCCAATATAAGGGC
* * * * * * *
13859549 CAAGTGCCAGCACCCGTCGCACATCATTTGCTCACACCACCCC-CGATCCCCCC-GATCGTCGGA
455 CAAGTACCAGCACCCATCGCACAGCATGTGCGCACACC-CCCCTCG-GCCCCCCAGATCGTCGAA
** * * * * * *
13859612 ACCCCAATTTCGTCGGACAGCAGATGCCCCGGTGAAG-A---AAGAT-GTGCCACC-A-GTAG--
518 ACCCCAATGCCGCCGGACA--AG-TTCTCCGGTGATGCACCGACGATGGTGCC-CCGACGAAGAA
* * ** * * ** * * * ** * **
13859668 --ATGCCCGAACCCAGCATGTGCTGCCGGAACACTCGATCCCGTTCGATCTTAGA--CTGGGAAT
579 AAATG-CAGCA-CCAGCACATGC--CC-GAGC-C-C-AGCATGTGCTACCGCA-ACCCTCGGTCT
* * * * *
13859729 GAACTCC-GTACGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACAAAACGAGCGT
635 G--GTCCAAT-CG--TAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAACGG
*
13859793 GCGGGCATTCAGCA
695 GCGGGCATACAGCA
* * * *
13859807 GGCCAGAGGGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGTACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
13859872 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATTGTCCCTTAAGCCTT
66 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * **
13859937 CACGTGAAGTTTCATGGCAAGACGTCTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTACGG
* * *
13860002 TTCGAGATTTTTTATAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTG
196 TTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
13860067 CATTTTTTGTTGGCATGCACAAAAGAAA-TCAGCTAAAAACTCGAAGTGTATAAGATTTTCTGAC
261 CA-TTTGTGTTGGCATGCACAAAA-AAATTCAACTAAAAACTCGAAGTGTACAAGATTTTCTGAC
* * * *
13860131 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCT
324 CATTTGAAAAAAGAGTACCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
13860196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGGCCAATATAAGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-AGGGGGGCCAATATAAGG
* * *
13860261 GCCAAGTACCAGCACCCATCGCACATCATGTGGGCACACCCCCCCTCGGCCCCCCCGATC-TCCG
453 GCCAAGTACCAGCACCCATCGCACAGCATGTGCGCACA-CCCCCCTCGGCCCCCCAGATCGT-CG
* **
13860325 AAACCCCAATGCCGCCGGACAGGTTCTCCGGTGATGCACCGGGGATGGTGCCCCGACGAAGAAAA
516 AAACCCCAATGCCGCCGGACAAGTTCTCCGGTGATGCACCGACGATGGTGCCCCGACGAAGAAAA
** *
13860390 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCGT
581 ATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCGT
* * * * *
13860455 AGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAAACGAACGGGCGGGCACTAC-GCC
646 AGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAACGGGCGGGCA-TACAGCA
* *
13860518 GGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATGTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
13860583 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* **
13860648 CTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTGTGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTACGG
* * * *
13860713 TTTGGGATTTTTTAAAATTTTTTCGGCAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
196 TTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
13860778 TATTTGTGTTGGCATGCACAAAAAAATTCAACTAAAAATTCGAAGTGTACAAGATTTTGTGACCA
261 CATTTGTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTCTGACCA
* *
13860843 TTTGAACAAAGAGTAGCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
326 TTTGAAAAAAGAGTACCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
13860908 AATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCC
391 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAGGGGGGCCAATATAAGGGCC
* * *
13860973 AAGTACCAGCACCCATCGGACAGCTTGTGCGCACATCCCCCTCGGCCCCCCAGATCGTCGAAACC
456 AAGTACCAGCACCCATCGCACAGCATGTGCGCACACCCCCCTCGGCCCCCCAGATCGTCGAAACC
** * * *
13861038 CCAATGCCGCCGTTCAAGTTCTCCGGTGATGCTCCGACGTTGGTGCCCTGACGAAGAAAAATGCA
521 CCAATGCCGCCGGACAAGTTCTCCGGTGATGCACCGACGATGGTGCCCCGACGAAGAAAAATGCA
* ** *
13861103 GCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACT
586 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCGTAGACT
13861168 GGGAATGA
651 GGGAATGA
13861176 GCTTTGTATG
Statistics
Matches: 1206, Mismatches: 139, Indels: 52
0.86 0.10 0.04
Matches are distributed among these distances:
708 149 0.12
709 55 0.05
710 156 0.13
711 290 0.24
712 250 0.21
713 169 0.14
714 69 0.06
715 34 0.03
716 6 0.00
717 9 0.01
718 5 0.00
720 9 0.01
721 2 0.00
722 3 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (708 bp):
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTACGG
TTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
CATTTGTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTCTGACCA
TTTGAAAAAAGAGTACCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAGGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACAGCATGTGCGCACACCCCCCTCGGCCCCCCAGATCGTCGAAACC
CCAATGCCGCCGGACAAGTTCTCCGGTGATGCACCGACGATGGTGCCCCGACGAAGAAAAATGCA
GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCGTAGACT
GGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAACGGGCGGGCATACAGCA
Found at i:13861196 original size:26 final size:26
Alignment explanation
Indices: 13861160--13861210 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13861150 CTGGTCTGAT
*
13861160 CTTAGACTGGGAATGAGCTTTGTATG
1 CTTAGACTGGGAATGAGCTCTGTATG
* *
13861186 CTTAGATTGGGAATGATCTCTGTAT
1 CTTAGACTGGGAATGAGCTCTGTAT
13861211 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (26 bp):
CTTAGACTGGGAATGAGCTCTGTATG
Found at i:13866009 original size:26 final size:26
Alignment explanation
Indices: 13865977--13866050 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
13865967 ATCTTAGACT
13865977 GGAATGAACTCTGTATGCCTAAACTG
1 GGAATGAACTCTGTATGCCTAAACTG
* *
13866003 GGAATGAACTTTGTATGCATAAACTG
1 GGAATGAACTCTGTATGCCTAAACTG
*
13866029 GGAATGAACTCCGTATGCCTAA
1 GGAATGAACTCTGTATGCCTAA
13866051 GTTAACTCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCTGTATGCCTAAACTG
Done.