Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 74 of 131
Found at i:13867929 original size:718 final size:715
Alignment explanation
Indices: 13866161--13868241 Score: 3031
Period size: 718 Copynumber: 2.9 Consensus size: 715
13866151 CTCGGTTCGA
* * *
13866161 TCCGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCCGGCAGGCA
1 TCCGATCTTAGAATGGGAATAAACTCCGTATGCCTAAGCCAACCGACAAAACGAG-CGGCGGGCG
* *
13866226 GGCTGGCGGGCACTATGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
65 GGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
13866291 GTGGGTTTAGGCACATGTTCATATTTCTATGTGCCAATGGCATTTTTATGGCTTGTAAATTCATA
130 GTGGGTTTAGGCACATGTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
13866356 CAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
**
13866421 TTTTCAAAACTTTTTACGGTTCGACATTTTTTAAAATTTTTTCGGAATGAGTTTT-GCACCCAAA
260 TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GAGTTTTGGC-CCCAAA
* * * *
13866485 CTTGGTAGACGTGATCCTTGTATTTGTGTTGGCATGCATAAAACAATTCAGCCAAAAACTCGAAG
323 CTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
13866550 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATA-GCTACTGG
387 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-AGGCTACTGG
* * *
13866614 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGGTGAGCGA
451 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
13866679 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTACGCAAACCACCCCCC
516 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A-CACCCCCC
* *
13866744 CTGGCCCCCCCGATCGCCTAAACCCCAATGCCGACGGTCAGGTTCTCCGCCGATGCTCCGACGAT
578 C-GG-CCCCCCGATCGTCGAAACCCCAATGCCGACGGTCAGGTTCTCCGCCGATGCTCCGACGAT
* * *
13866809 GGTGCCTCGACGAAGAACAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGTTGCCGGAACC
641 GGTGCCCCGACGAAGAACAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
13866874 CTCGGTCTGG
706 CTCAGTCTGG
* *
13866884 TCCGATCTTAGACTGTGAATAAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGTG
1 TCCGATCTTAGAATGGGAATAAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC-GGC----G
* * *
13866949 GGCAGGTGGGCGGGCGGGCACTACGTCGACCAGATAGACGGGATGCGCAAGCCGTGGATCGATAG
61 GGC----GGGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
13867014 GGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTACGTGCCAATGCCAATTTTATGGCTTGTA
122 GGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
*
13867079 AATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
187 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** ** **
13867144 TTTCACGATTTTTGAAACTTTTTGTGGTTTAGGATTTTTTAAAATTTTTTCGGAAGACGTTTTGG
252 TTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGA-GTTTTGG
* * * *
13867209 CCCCAAACTATGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAACTAGAAA
316 CCCCAAACT-TGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
13867274 CTCTAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAAGGC
380 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGC
* *
13867339 TACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
445 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
13867404 GAGGGACAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCATATCATGTGCGCATACCC
510 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** ** *
13867469 CCCCGGCCCTTCCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTTTGGGGATGCTTCGAC
575 CCCCGGCCC-CCCGATCGTCGAAACCCCAATGCCGAC-GGTCAGGTTCTCCGCCGATGCTCCGAC
* ** *
13867533 GATGGTGCCCCGACGAAGAA-AATTGCAGCACCAGCACATGTTCGAG-TCAGCATGTGCTGCCGC
638 GATGGTGCCCCGACGAAGAACAA-TGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGC
13867596 AACCCTCAGTCTGG
702 AACCCTCAGTCTGG
** * * * *
13867610 TTTGATCTTAGAATGGGAATGAACTCCGTCTGCCTAAGCCAACCGACGAAACAAGCGTGCGGGCG
1 TCCGATCTTAGAATGGGAATAAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCG-GCGGGCG
* * ** *
13867675 GGCGGGTGGGCATTATGCCGGTCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAG
65 GGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
13867740 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
130 GTGGGTTTAGGCACATGTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
13867805 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACAA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*
13867870 TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
260 TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GAGTTTTGGCCCCAAA-
* * * *
13867935 CTGGTGGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGT
323 CTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
13868000 GCACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCA
*
13868065 GCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
13868130 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACA-CCCCCCGGCC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * *
13868194 CCCCGATCGTCGAAACCCCAATGCCGTCGATCATGTTCTCCGACGATG
583 CCCCGATCGTCGAAACCCCAATGCCGACGGTCAGGTTCTCCGCCGATG
13868242 GTGCCCCCAC
Statistics
Matches: 1215, Mismatches: 123, Indels: 47
0.88 0.09 0.03
Matches are distributed among these distances:
716 37 0.03
717 12 0.01
718 460 0.38
719 4 0.00
722 5 0.00
723 56 0.05
725 1 0.00
726 83 0.07
727 87 0.07
728 8 0.01
729 1 0.00
730 3 0.00
731 455 0.37
732 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
TCCGATCTTAGAATGGGAATAAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGCGGGCGG
GCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATGTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGAGTTTTGGCCCCAAACTT
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
CGATCGTCGAAACCCCAATGCCGACGGTCAGGTTCTCCGCCGATGCTCCGACGATGGTGCCCCGA
CGAAGAACAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGG
Found at i:13871729 original size:26 final size:26
Alignment explanation
Indices: 13871700--13871752 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13871690 CTGGTCCGAT
*
13871700 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAAACTGGGAATGAACTTC-GTATG
13871726 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTTCGTATG
13871752 C
1 C
13871753 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTTCGTATG
Found at i:13873497 original size:26 final size:26
Alignment explanation
Indices: 13873468--13873520 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13873458 CTGGTCCGAT
13873468 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13873494 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13873520 C
1 C
13873521 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13874573 original size:901 final size:899
Alignment explanation
Indices: 13872595--13875101 Score: 3337
Period size: 901 Copynumber: 2.8 Consensus size: 899
13872585 CCGGTCCGAT
* * *
13872595 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGACCTTGGGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * *** * *
13872660 C-GTCCAGAGGGAC-AGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACATGCTATCGAT
66 CAG-CCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGAAAGGGTCCCCCTCTGCGTGCTATCGAT
* * * * * ** * *
13872723 CCTGTTACCGTAACCCTCAATT-CGGTC-AATCTGAGACTGGGAATGAACTTTGTATGCCGAAAC
129 CCTGCTACCGCAACCCTC-GTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *** * ** *
13872786 CGACCGACG-AACGAACAAGCGGCTGGGCGAACGGAG-ACTATGCCGG--AGAGAGACAGGATGC
193 CAACCGACGAAACG-AGTGGCGGGTGGGCGGGC-GAGCACTACG-CGGCCAGAGAGACAGGATGC
13872847 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
255 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
* * *
13872912 GCCATTTTTATGGCTTGTAAATTCATATAATGGTCTCTTTAGCCTTCACGTGAAGTTTCATGGCA
320 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
13872977 AGGCGACTCGTTTTCTATTTTTCACGATTTTTTAAA-TATTTTACGGTTTGGGATTTTTTAAAAT
385 AGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT-TTTTACGGTTCGAGATTTTTTAAAAT
* ** *
13873041 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCACATGGA
449 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCA
* *
13873106 CAAAAACAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTCGAAAAAAGTGTCCC
513 CAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
13873170 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAG
577 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
13873235 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
642 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * ** *
13873300 GCACATCATGTGCGCACGCCCCCCGGCCCTCCCGATCGCCGGAACCCTAATGCCGCCGACCAAGT
707 GCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * *
13873365 TCTCTGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAG
771 TCTCCGGCGATGCTCCGACGACGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAG
* * *
13873430 CCTAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
836 CCCAGCATGTGCTACCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
13873494 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * *** * *
13873559 CGGCCAGAGGGGCGGGATACGCTAGCCGGGGATCG-GTCGGTCCCCCTCTGCTTGCTGTCGATCC
66 CAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGAAAGGGTCCCCCTCTGCGTGCTATCGATCC
* * * * * *
13873623 TACTGCTGCAAGCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13873688 CCGATGAAACGAGTGGACGGGTGGGTGGGCGAGCACTACATCGGCCAGAGAGACAGGATGCGCAA
196 CCGACGAAACGAGTGG-CGGGTGGGCGGGCGAGCACTAC-GCGGCCAGAGAGACAGGATGCGCAA
* * *
13873753 GCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTGTGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
13873818 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
13873883 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * ** *
13873948 CGAAAGGATTTTTGGCCCCAAACTTGGTAGGCACGATCCTTCTATTTTTTTGGCATGCACAAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAA
* *
13874013 AATTCAGCTAAAAACTCGAATTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
13874078 GACACTTTAATGGTTACTGGCAGTAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * ** * *
13874143 GCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAACGATCGAGTACCAGCACCCATTGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
13874208 ATGTGCGCACACCCCCCGACCCCCCGATCGCCGGAACCCTAATGTCGCCGGTTAGGTTCTCCGGT
714 ATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* ** * * * * *
13874273 GATGCTTCGGTGACGGTGCCCCGATGAAGAAAAATGCGGTACCAACACCTACCCAAGCCCAGCAT
779 GATGCTCCGACGACGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCAT
* * * * ** *
13874338 GCGCTGCCATAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTATGCATG
844 GTGCTACCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13874394 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* ** *
13874459 CAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGAAAGGGACCCCCTCTGCGTGCTGCCAATCC
66 CAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGAAAGGGTCCCCCTCTGCGTGCTATCGATCC
* * * ** *
13874524 TGCTACTGGACCCCTCGTTATGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
131 TGCTACCGCAACCCTCGTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
13874589 CTGATGAAACGAGATGGCGGGCGGACGGAC-AGGCAATACGTCGGCCAGAGAGACAGGATGCACA
196 CCGACGAAACGAG-TGGCGGGTGGGCGGGCGA-GCACTACG-CGGCCAGAGAGACAGGATGCGCA
* * * * ** *
13874653 AGCTGCGGATCGATATGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCTAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
13874718 ATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
13874783 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
13874848 TCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCATAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAA
*
13874913 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13874978 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAAAGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
13875043 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCAT
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
13875102 GAAACGAGCG
Statistics
Matches: 1409, Mismatches: 182, Indels: 31
0.87 0.11 0.02
Matches are distributed among these distances:
897 1 0.00
898 37 0.03
899 128 0.09
900 253 0.18
901 562 0.40
902 427 0.30
903 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGAAAGGGTCCCCCTCTGCGTGCTATCGATCC
TGCTACCGCAACCCTCGTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGTGGCGGGTGGGCGGGCGAGCACTACGCGGCCAGAGAGACAGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGCTCCGACGACGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGT
GCTACCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13876814 original size:26 final size:26
Alignment explanation
Indices: 13876776--13876828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13876766 CTGGTCCAAT
*
13876776 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
13876802 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
13876828 C
1 C
13876829 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:13877706 original size:26 final size:26
Alignment explanation
Indices: 13877677--13877729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13877667 CCAGTCCGAT
13877677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13877703 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13877729 C
1 C
13877730 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13877930 original size:901 final size:893
Alignment explanation
Indices: 13876170--13884378 Score: 10022
Period size: 901 Copynumber: 9.2 Consensus size: 893
13876160 CTAGAGAGAC
* *
13876170 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGCA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
13876235 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * * * *
13876300 TTTCACGATTTTCAAAACTTTTTACAGTTTGGGATTTTTAAAAATTTTTTTGAAAGGATTTTTGA
131 TTTCATGATTTTCAAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
*
13876365 CCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
195 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
13876430 ATCAAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGC
260 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
13876495 TACTGGCAGCTAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
325 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
13876560 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCTAACACACATCATGTGCGCACACCA
390 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-
* *
13876625 CCCCCTCGACCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTG
453 CCCCC-CG-CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * *
13876690 ACGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGTC
516 ATGATGGTGCCCCGA-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
** * * * * *
13876754 TTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGGCTAGGAATGAA
580 GCAACCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
13876819 CTCCGTATGCCTAAGTTAACCCGCGAAATGAGCGTACAGGCGCCCAGCCTGCCAGAGGGGCGGGA
644 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * ** *
13876884 TGCGCAAGCCGGGGGTCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGTAACACTCG
709 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCTCG
* ** * *
13876949 GTCCAATCCAATCTTAGACTGGGAATGGACTCCATATGCCTAAGCCAACCGACGAAATGAACGGA
774 GTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AAC-GA
* * *
13877014 CGGGCGGGTGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAT
834 ---GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
13877077 GGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
13877142 AATTCATACAACGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
13877207 TTTCATGATTTTCAAAATTTTTGA-GGTTCGAGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTG
131 TTTCATGATTTTCAAAATTTTT-ACGGTTCG-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
*
13877270 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTACAA
194 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
13877335 ATTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTCCAGACACTTTAATGG
259 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
13877399 CTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAA
324 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
13877464 TGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACC
389 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * * *
13877529 CCCCCGACCACTCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGATGATGCTCCGGTG
454 CCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATG
* * * * * * * *
13877594 ATGGTGGCCCGGTGAAGAAAAAAGCGACACTAGTAGATGCCCGAGCCCAGCATGTGCTGCCACAA
519 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* *
13877659 CCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGCACTCC
584 CCCTCG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
*** * * * *
13877724 GTATGCCTAAGTCAACCCGTAAAACAAGCATGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGCG
648 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * ** * *
13877789 CAAGCCGGGGATCGGTCGGGTCCCCCTCAGCATGCCGTCGATCCTACCATCGTAACCGTCGGTCT
713 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCC
13877854 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGG
778 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC------G
* * *
13877919 CGTGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAG
837 -G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
13877978 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTTTGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
13878043 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** *
13878108 TTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
131 TTTCATGATTTTCAAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * *
13878173 CTCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA
195 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * * *
13878238 CTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAATACTATCCCCATTTTAGACACTTTAATGGC
260 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
13878303 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
325 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
13878368 GAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCC-TCGCACATCATGTGTGCACA---
390 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * * **
13878429 CCCGGTCCCCCCAATCGCCAGAACACCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGA
455 CCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGA
* * *
13878494 TGGTGCACCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAA-
520 TGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
13878558 ---C--CC--TCCG---TT---C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGT
585 CCTCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * ** * * *
13878599 ATGCCAAATTCAACCCACGAAACGAGCGTGCGGGCATTCAGCCAGCTAGTGGGGCGGGATGCGCA
650 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * ** *
13878664 ATCCAGGGATCAGCCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCAA
715 AGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCAG
* * *
13878729 TCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA--A--GAGCGGGCG
780 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * *
13878790 GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGAGAG
845 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * ***
13878839 GGTGGTAGGTGGGTTTAGGCACATCTCCATATTTGTGCGTGCCAATATAATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
13878904 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
13878969 TTTCATGATTTTCAAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGG
131 TTTCATGATTTTCAAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
13879034 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
195 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
13879099 CTC-AAGGTGTACAAGATTTTGTGACCAATTGAAAATAGTGTCCCCATTTTAGACACTTTAATGG
260 CTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
13879163 CTACTGGCAGCAAACCTATAAAATCTCAAATGTTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
324 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
13879228 AGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACAGCATGTGCGCACACC
389 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
13879292 CCCCCGACCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGGT
454 CCCCCG-CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAT
* * * * * **
13879357 GATGGTGCCGCGACGAAGAAAAATGCGGCACCAGCAAATGCCTGAGCCCAACATGTGCTGCCATA
518 GATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
13879422 A---T-G-CC--T-CGGTC-----C---G---G---TCCG-AT-CTTAGACTAGGAATGAACTTC
583 ACCCTCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
13879463 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGTG
648 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
** * * ** * * * ** * * *
13879528 CAATTCGGGGATTGATTAGGTCCCCCTCTGCATCCTGCCAATCCTTTTGCCACAATCCTCAGT-C
713 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCC
* ** * * *
13879592 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACAGGCGG
778 AG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * *
13879657 GCGGGCAATACGCCGGCCAGAGAGATGGGATGCACAAGCTGTGGATCGATAG
842 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
13879709 GGTGGTAGGTGGGTTTAGGCACGTCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
13879774 AACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** * * * * *
13879839 TTTCACAATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
131 TTTCATGA-TTTTCAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * **
13879904 TCCCAAACTTGCTAGATATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
195 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
13879969 CTCGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTGATGGC
260 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
13880034 TA-TGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGAT
325 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
13880098 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATCGCACATCATGTGCGCACACCC
390 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** * * * ** *
13880163 CCTCGGCCCTCCCGATCGCTAGAACCCCATTACCGTCAGTCAGGTTCTCCGGTGATGCTCCGACG
455 CC-CCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATG
* * *
13880228 ATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACTTGCCCGAGCCCAACATGTGCTGCCGCAA
519 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
** * * * * * *
13880293 CCCTCGGTCCAATCTGATCTTAGATTGGGAATGAACTCCGTACGTTTCGATTGGGAATGAACTCC
584 CCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * * * *
13880358 GTATGCCTAAGTCAACCCATGAATCGAGCGTACGAGTGCTCAGCCGGCCAGAGGAGCGGAAAGCT
648 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** * * * * * *
13880423 CAAGCCAGGGATCGACCGGTTCCCCCTCAGCGTCCTGTCGATCCTGCTATCACAACCCTCGATCC
713 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCC
* * * * * *
13880488 GGTCTGATCTAAGACTGGGAATGAACTCCGTATGCCGAAGCCGAA-TGATGAAACGAACGGGCAG
778 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCGACGAAACGAGC-GG--G
* * *
13880552 TCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAG
839 -CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
13880608 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
13880673 AATTCATATAATGGGTCTCTTGAGCCTTCACGTGAAGTTTCATGGGCAAGGCGACTCG--TTCTA
66 AATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GGCAAGACGACTCGTTTTCTA
* ** * *
13880736 TTTTTCAATGATTTTCCATAACTGTTTTTGGGGTTCGGGATTTTTTTTAAATTTTTTTGGAA-GA
129 TTTTTC-ATGATTTT-CA-AA--ATTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGA
* * *
13880800 GTTTTTG-CCCAAACTTGTGTGGACGTGATCCTTGTATTTTTG-TGGTATGCAC-AAAAAA-TC-
188 GTTTTGGCCCCAAACTTG-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
13880860 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTCAAAAAAAG-GTCCGGCCATTT-AAAA
252 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCC--CCATTTCAGAC
13880923 ACTTTTAAT-GCTACTGGCAGC-AACCTGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
314 AC-TTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
13880986 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
377 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
13881051 TGTGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCAATGCCGTCGGTCAAGTTTTTCGAC
442 TGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * *
13881116 GATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCAT
507 GATGCTCCGATGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** *
13881181 GTGCTGTGGCAACCCTCGGTCCGGTCC-AGTCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
572 GTGCTGCCGCAACCCTC-GTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * *
13881245 GGGAATGAACTCCGTATTCCTAAGTCAACCCATGAAACGATCGTGCGGGCGCTTAGTCGGCCAAA
635 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** * * * * * *
13881310 TAGG-GGGATGCGTAAGCCGAGGATC-GACTGGATCCCCCTGTGCATGCTGAT-GATCCTGCTGC
700 GGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCATGCTG-TCGATCCTGCTAC
* * * * * * *
13881372 CACAACCCTTGG-CCTGGT-TCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCTAACTGA
763 CACAACCCTCGGTCC-AGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
13881435 CGAAACGAGCGGACGGGCGGGCGCTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGA
826 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
13881500 TAG
891 TAG
* * *
13881503 GGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCATTTTTTATGGCTTGT
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGT
* * * * *
13881568 AAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCGAGACGACTCCTTTTTTAT
65 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
13881633 TTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTTGGAAGGCGTTTTG
130 TTTTCATGA-TTTTCAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * * * * *
13881698 GCCCCAAACTTGGTGGACATGATCCTTGTATTTTTTTTGCCTTGTAAAAAAAAATTCAGCTAAAA
194 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
13881763 ACTCAAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGG
259 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
13881828 CTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGA
324 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
13881893 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACC
389 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * ** *
13881958 TCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGACACCGGTCAGGTTCTCCGAGGATGCTCCGA
454 -CCCCC-GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
** * *
13882023 TGATGGTGCCCCGATGAAGAAAAATGTAGCACCAG-A-ATGAGCCCGAGCCTAGCATGTGCTGCT
517 TGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACAT--GCCCGAGCCCAGCATGTGCTGCC
* * *
13882086 GCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGATTAGACTGGGAATGAA
580 GCAACCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * * *
13882151 CTCCATATGCCTAAGTCAACCCACGAAATGAAG-GTACGCGCGCTTAGCCGACCAGATGGGTGGG
644 CTCCGTATGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
** * * * ** * *
13882215 ATGCGCAAGTTGAGGATCAG-CTGGATCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCC
708 ATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCT
* *
13882279 CGGTCCAGTTTGATCTTAGA-TAGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC-A--
772 CGGTCCAGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * *
13882340 -AGCGAGCGGGCACTACGCCGGCCGGAGAGACGGGATGCGCAAGCCATGGATCGATAC
836 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
13882397 GGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTTCA-GACCAATTG-CATTTTTATGGCTTG
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG-CCAA-TGCCATTTTTATGGCTTG
*
13882460 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTCT
64 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCT
*
13882525 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATATTTTT-GGAAGGAGTT
128 ATTTTTCATGATTTTCAAAA-TTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTT
* *
13882589 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCATAAAAAAA-TCAGCTA
191 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
13882653 AAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGGCACTTTAA
256 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
13882718 TGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCTAGGTT
321 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
**
13882782 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTTGCAC
386 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
13882847 ACCCCCACGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCAGGTTCTCCGACGATGCTCC
451 ACCCCC-CCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* * * *
13882912 GATGATAGT-CCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGC
515 GATGATGGTGCCCCGA-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
13882975 CGTAACCCTCTGTCTGATCTGATCTTCA-ACTGGGAATGAACTCCGCATGCTTAGACTGGGAATG
579 CGCAACCCTC-GTCCGGTCCGATCTT-AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * ** * * **
13883039 AACTCCGTAGGCCTAAGTCAACCCACGAAACGAGCATGCAAGCGGTCAGCCGGCCAGAAGGTTGG
642 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * * * * *
13883104 GATGCGTAAGTCGAGGATTGGTCAGGTCCCCCTCTGCGTGTTGTCAATCCTGTTGCCACAACCCT
707 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCT
** * * * * *
13883169 CGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCTTATGCCCAAGCCAATCGACGAAATGAGCG
772 CGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-
* * *
13883234 GGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAG
836 -G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
13883295 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
13883360 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAGGACGACT-GATTTTCTAT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTAT
** * * * ** *
13883424 TTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGATTTTTG
130 TTTTCATGA-TTTTCAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
13883489 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAACAAA-TCAGCTAAA
194 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAA
* * * * *
13883553 AACTCGAGGTGTACAAGATTTTGTGACCATTAGGAAAAAGTGTCCCTATTTCA-AGTACTTTAAT
258 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAAT
* *
13883617 GGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTT
322 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
13883681 GATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
387 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* *
13883746 CCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGA
452 CCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
** * * * * *
13883811 TGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACGCATGCCTGAGCCTAGCATGTGCTGTCGC
517 TGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
13883876 AA-CC-C-T-C-G---G----T----T-----TG-A-TCCG-AT-CTTAGACTGGGAATGAACT-
582 AACCCTCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
13883915 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCAGGATGC
647 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * ** * ** *
13883980 GTAAGTCGGGGATCGGCCGGGTCCCCCTCTACATGCTGCCAATCCTATTGCCGTAACCCTCAGTC
712 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTC
*
13884045 C-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCG
777 CAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * * **
13884109 GGCAGGCACTTCGCCTGCTAGAGAGACGGGATGCATAAGCCGTGGATCGATAG
841 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
13884162 GGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCCTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
13884227 AATTCTTACAATGGTCCCTCAAGCCTTCACGTGATGTTTCCTGGCAAGACGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** * **
13884292 TTTCATGATTTTCCAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAT
131 TTTCATGATTTT-CAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
13884357 CCCCAAACTTGGTAGACGTGAT
195 CCCCAAACTTGGTAGACGTGAT
13884379 GGCTACTGGC
Statistics
Matches: 6372, Mismatches: 784, Indels: 332
0.85 0.10 0.04
Matches are distributed among these distances:
860 4 0.00
861 467 0.07
863 1 0.00
864 4 0.00
865 110 0.02
866 184 0.03
867 236 0.04
868 2 0.00
869 92 0.01
870 464 0.07
871 171 0.03
872 19 0.00
873 174 0.03
874 6 0.00
875 6 0.00
876 4 0.00
878 2 0.00
879 3 0.00
881 2 0.00
884 1 0.00
885 1 0.00
887 3 0.00
889 4 0.00
890 250 0.04
891 88 0.01
892 130 0.02
893 202 0.03
894 222 0.03
895 433 0.07
896 103 0.02
897 376 0.06
898 527 0.08
899 387 0.06
900 263 0.04
901 651 0.10
902 177 0.03
903 167 0.03
904 19 0.00
905 140 0.02
906 135 0.02
907 142 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCATGATTTTCAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGAT
GGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
GCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCAGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
Found at i:13881247 original size:26 final size:26
Alignment explanation
Indices: 13881211--13881261 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13881201 CCGGTCCAGT
*
13881211 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13881237 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13881262 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13882138 original size:26 final size:26
Alignment explanation
Indices: 13882109--13882159 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13882099 CGGTTCGATC
*
13882109 TTAGACTAGGAATGAACTCCGTATGA
1 TTAGACTAGGAATGAACTCCATATGA
*
13882135 TTAGACTGGGAATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
13882160 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGA
Found at i:13885412 original size:26 final size:26
Alignment explanation
Indices: 13885383--13885435 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13885373 CCGGTCCGAT
13885383 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13885409 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13885435 C
1 C
13885436 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13886292 original size:26 final size:26
Alignment explanation
Indices: 13886263--13886313 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13886253 CGGTCTGATC
* * *
13886263 TTAGATTGGGAATGAACTCTGTATGA
1 TTAGACTGGGAATAAACTCCGTATGA
13886289 TTAGACTGGGAATAAACTCCGTATG
1 TTAGACTGGGAATAAACTCCGTATG
13886314 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGA
Found at i:13886892 original size:867 final size:877
Alignment explanation
Indices: 13884721--13887297 Score: 3244
Period size: 891 Copynumber: 2.9 Consensus size: 877
13884711 AACGGGTGGG
* * * * * * *
13884721 CGGGAGGGCAGGCACTACGTCGGCCATAGAGACGGGATGCGCAAGCCATGGACCGATAGGGTGGT
1 CGGGCGGGCGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * * * *
13884786 AGGAGGGTTTGGGTACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
13884851 TACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGAC
131 TACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
* * * * * * * *
13884916 GATTATTGAAACATTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAC
196 GATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
* * * * *
13884981 ACTTGTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTTGAA
261 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAA
* * *
13885046 GTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGG
326 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
* *
13885111 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
391 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
13885176 TAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGA
456 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCCGG
* * * *
13885241 CCCCCCCGATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCCCCGATGCTCCGGTGATGGTG
521 CCCCCCCGATTG-CGAAACCCCAAT-CTGCCGGTCA-G--------CGATGCTCCGGCGATGGTG
* * * *
13885306 CTCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGA-AACCCTT
575 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-ACAACCCTC
* * *
13885370 GGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
639 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
13885435 CCTAAGTCAACCCGTAAAACGAACGTGCGGGTGCTCAGCCGGCCAGAGGAGCGGGATGTGTAAGG
704 CCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGT
* * * * ** * * *
13885500 CGGGGA-TCGGCTAGGTCCCCCTCTGCGTGCTAACGTAACCTCAGTCCGATCTAATCTTAGACTT
769 CGAGGATTAGTC-GGGTCCCCCTCTGCGTGCTGTCGTATCCTCAGTCCGA-CTAACCTCAGACTT
* *
13885564 GGAAAGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGCACGGA
832 GGAAACAACTCCGTATGCATAAGCCAACCAAC--AACGAGCGCACGGA
* *
13885612 CGGGCGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
1 CGGGCGGGCGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
13885677 AGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
13885742 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT
131 TACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
** * * * **
13885807 GATTTTCAAAACATTTTATGGTTCGGGACTTTTTAAAATTTTTTCGCAAGGAGTTTTGGATCCAA
196 GATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
* *
13885872 ACTTGGTAGACGTGATCCTCGTATTTTTGTCGGCATGCAC-AAAACAATTCAGCTAAAAACTCGA
261 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC-ATTCAGCTAAAAACTCGA
13885936 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
325 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
* *
13886001 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGAGTGTGAGTTCTCGAGGTTTGATGAGGG
390 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
13886066 ATAAGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGTGAACA-CCCCCCG
455 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCCG
* **
13886130 GCCCCCCCGATTGCTGAAACCCCAATACTGCCGGTCAG-GAT-CTCTGGCGATGGTGCCCCGGGG
520 GCCCCCCCGATTGC-GAAACCCCAAT-CTGCCGGTCAGCGATGCTCCGGCGATGGTGCCCCGACG
*
13886193 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACGCTCGGTCCGGTC
583 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTC
* * *
13886258 TGATCTTAGATTGGGAATGAACTCTGTATGATTAGACTGGGAATAAACTCCGTATGCCTAAGTCA
648 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
13886323 ACCCACAAAACGAGTGTGCGAGCACTCAGTCGGCCAGAGGGGCGGGATGCGTAAGTCGAGGATTA
713 ACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGAGGATTA
* * * **
13886388 GTCGGGTCCCTCTCTGCATGCTGTCG-ATCCT-ACTGCCG-C-AACCCTCA-A-TCT-GACCCAA
778 GTCGGGTCCCCCTCTGCGTGCTGTCGTATCCTCAGT-CCGACTAA-CCTCAGACT-TGGAAACAA
* * ** ** * *
13886446 -T-CTTA-G-AT-TGGGAATGAAC-TCTGTATGC-CTAC-GT
840 CTCCGTATGCATAAGCCAACCAACAAC-G-A-GCGC-ACGGA
* * *
13886480 CGGGCGGGCGGGCACTATGCCGGTAAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGT
1 CGGGCGGGCGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
13886545 AGGTGGGTTTAGCCACACCTTCATATTTCTGCGTGCCAATGCTATTTTTATGGCTTGTAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
13886610 TACAATTGTCCCTTAAGCCTTCACGTGCAA-TTTCATGGCAAGATGACTCATTTTCTATTTTTTT
131 TACAATAGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTTC
* *
13886674 A-GATTTTTGAAAC-TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC
194 ACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* *
13886737 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAAACATTCAGCTAAAAACTCG
259 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCG
*
13886802 AAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTAGACACTTTAATGGCTACT
324 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
* *
13886867 GGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGG
389 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
13886932 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCC
454 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCC
* * * * * *
13886997 GGCCCCCCCGATCGCCAGAACCCCAATGTCGCCGGTTAGCTTCTCCGACGTTGCTCCAGCGATGA
519 GGCCCCCCCGATTGCGA-AACCCCAATCT-GCCGGTCAG------CGA---TGCTCCGGCGATGG
* * * * * *
13887062 TGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCTAGTATATGCTGCCACAACCCT
573 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCT
* * * *
13887127 CGATCCGAT-TCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCATA
638 CGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * **
13887191 TGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTTAGCCGACCAGAGGGGCAGGATGCACAA
702 TGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA
*
13887256 GTC-AGGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCGTATCC
767 GTCGA-GGATTAGTCGGGTCCCCCTCTGCGTGCTGTCGTATCC
13887298 CTTGGTCTGA
Statistics
Matches: 1477, Mismatches: 178, Indels: 73
0.85 0.10 0.04
Matches are distributed among these distances:
866 1 0.00
867 279 0.19
868 228 0.15
869 18 0.01
870 1 0.00
871 1 0.00
872 3 0.00
873 1 0.00
874 5 0.00
875 6 0.00
876 4 0.00
877 2 0.00
878 11 0.01
879 409 0.28
880 10 0.01
889 2 0.00
890 41 0.03
891 455 0.31
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
CGGGCGGGCGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
GATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCCGG
CCCCCCCGATTGCGAAACCCCAATCTGCCGGTCAGCGATGCTCCGGCGATGGTGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCTGA
TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGAGGATTAGTC
GGGTCCCCCTCTGCGTGCTGTCGTATCCTCAGTCCGACTAACCTCAGACTTGGAAACAACTCCGT
ATGCATAAGCCAACCAACAACGAGCGCACGGA
Found at i:13887192 original size:26 final size:26
Alignment explanation
Indices: 13887141--13887193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13887131 CCGATTCGAT
* **
13887141 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13887167 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
13887193 C
1 C
13887194 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13887672 original size:752 final size:741
Alignment explanation
Indices: 13886588--13887997 Score: 2008
Period size: 752 Copynumber: 1.9 Consensus size: 741
13886578 TGCCAATGCT
* *
13886588 ATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGCAATTTCATGGCAAGA
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAATTTCACGGCAAGA
* * *** *
13886653 TGACTCATTTTCTATTTTTTTAGATTTTTGAAACTTTTACGGTTTGGGATTTTTTAAAATTTTTT
66 CGACTCATTTTCTATTTTTTCAGATTTTTGAAACTTTTACCACTTGAGATTTTTTAAAATTTTTT
* *
13886718 CGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAA
131 CGAAACGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAA
* * * *
13886783 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTT
196 ACATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
* *
13886848 AGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
261 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAG
* ** * *
13886913 CTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
326 CTCTCGAGGTTTGATGAGGGACAACGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * **
13886978 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGTCGCCGGTTAGCTTCTCC
391 AATGTGCGCACAACCCCCCGGCCCCCCCGATCGACAGAACCCCAA--T-GCC-G-T--C-GAT-C
* * *
13887043 GACGTTGCTCCAGCGATGATGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCTAG
447 -ACGTT-CTCCAGCGATGATGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAG
* *
13887108 TATATGCTGCCA-CAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
510 CATATGCTG-CAGCAACCCTCGATCCAATTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
** * *
13887172 ACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTTAGCCGACC
574 ACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGACC
*
13887237 AGAGGGGCAGGATGCACAAGTCAGGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCGTATCCCTTG
639 AAAGGGGCAGGATGCACAAGTCAGGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCGTATCCCTTG
13887302 GTCTGATCTGATCTTACGCAGACGGGCGTGCCATTACC
704 GTCTGATCTGATCTTACGCAGACGGGCGTGCCATTACC
13887340 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCACGGCAAG
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAA-TTTCACGGCAAG
*
13887404 ACGACTCATTTTCTA-TTTTTCACGATTTTTGAAACTTTTTGCCACTTGAGATTTTTTAAAATTT
65 ACGACTCATTTTCTATTTTTTCA-GATTTTTGAAAC-TTTTACCACTTGAGATTTTTTAAAATTT
* *
13887468 TTTCGGAACGAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTGTA
128 TTTCGAAACGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC-T-TGCA
*
13887532 -AAAAA-ATTCAGCTAAAAACGC-ACAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
191 CAAAAACATTCAGCTAAAAACGCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
13887594 AATTTCAGACACTTTAATGGCTACTGGCAGCAAATC-GATAAAATCTCAAATGCTCTCTAAGGGG
255 AATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG-TAAAATCTCAAATGCTCTCTAAGGGG
* *
13887658 GTGTGAGTTCTCGAGGTTTGATGAGGGACAACGGCCCAATATAAGTGCCAAGTACCAGCACCCAT
319 GTGTGAGCTCTCGAGGTTTGATGAGGGACAACGGCCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
13887723 CGCACATAATGTGTGCACAACCCCCTGGCCCCCCCGATCGACGGAACCCCAATGCCGTCGATCAG
384 CGCACATAATGTGCGCACAACCCCCCGGCCCCCCCGATCGACAGAACCCCAATGCCGTCGATCAC
** * * * * *
13887788 GTTCTCTGGCGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
449 GTTCTCCAGCGATGATGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATA
* * * * * *
13887853 TGCTGCAGCAACCCTCGGTTCAATTTGATCTTATACTGGGAATGAACTTTGTATGCTTAGACTGG
514 TGCTGCAGCAACCCTCGATCCAATTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAG
** *
13887918 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACTGACCAAAGG
579 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGACCAAAGG
* *
13887983 GGCGGGATGCCCAAG
644 GGCAGGATGCACAAG
13887998 CCGGGGTTCG
Statistics
Matches: 585, Mismatches: 65, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
740 2 0.00
741 176 0.30
742 4 0.01
743 1 0.00
744 1 0.00
745 1 0.00
747 1 0.00
748 1 0.00
749 3 0.01
750 1 0.00
751 10 0.02
752 339 0.58
753 42 0.07
754 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (741 bp):
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAATTTCACGGCAAGA
CGACTCATTTTCTATTTTTTCAGATTTTTGAAACTTTTACCACTTGAGATTTTTTAAAATTTTTT
CGAAACGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAA
ACATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAG
CTCTCGAGGTTTGATGAGGGACAACGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
AATGTGCGCACAACCCCCCGGCCCCCCCGATCGACAGAACCCCAATGCCGTCGATCACGTTCTCC
AGCGATGATGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATATGCTGCA
GCAACCCTCGATCCAATTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAA
CTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGACCAAAGGGGCAGGA
TGCACAAGTCAGGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCGTATCCCTTGGTCTGATCTGAT
CTTACGCAGACGGGCGTGCCATTACC
Found at i:13887911 original size:26 final size:26
Alignment explanation
Indices: 13887882--13887934 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13887872 TCAATTTGAT
* *
13887882 CTTATACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13887908 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13887934 C
1 C
13887935 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13888813 original size:26 final size:26
Alignment explanation
Indices: 13888784--13888836 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13888774 CCGATCCGAT
*
13888784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13888810 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13888836 C
1 C
13888837 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13890126 original size:891 final size:896
Alignment explanation
Indices: 13887338--13891508 Score: 5568
Period size: 902 Copynumber: 4.6 Consensus size: 896
13887328 CGTGCCATTA
*
13887338 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAA
1 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * **
13887403 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCCACTT-GAGATTTTTTAAAATT
66 GACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTG-CGGTTCGAGATTTTTTAAAATT
* ***
13887467 TTTTCGGAACGAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTGT
130 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* * *
13887531 AAAAAAATTCAGCTAAAAACGCACAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAA
195 AAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAA
* * *
13887596 TTTCAGACACTTTAATGGCTACTGGCAGCAAATCGATAAAATCTCAAATGCTCTCTAAGGGGGTG
260 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
* **
13887661 TGAGTTCTCGAGGTTTGATGAGGGACAACGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGC
325 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGC
* * * * *
13887726 ACATAATGTGTGCACAACCCCCTGGCCCCCCCGATCGACGGAACCCCAATGCCGTCGATCAGGTT
390 ACATCATGTGCGCAC-ACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
13887791 CTCTG-G-C--GATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
454 CTCCGCGACGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * **
13887852 GTGCTGCAGCAACCCTCGGT-TCAATTTGATCTTATACTGGGAATGAACTTTGTATGCTTAGACT
519 GTGCTGCCGCAACCCTCGGTCT-AATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
13887916 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACTGACCAAA
583 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGA
* * * *
13887981 GGGGCGGGATGCCCAAGCCGGGGTTCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCG
648 GGGGCGGGATGCCCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCTGCTACCG
* ** * *
13888046 CAACCCTCGGTCCTGTCCAATCTTATACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
713 CAACCCTCAGTCCTGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
13888111 ACGAACGGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
778 ACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * ***
13888176 TCGATAGGGTGGCAGGTGGGTTTGGGCACATCTTCATATTTCTATGTGCCAATG
843 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* **
13888230 GCATTTTTATGAATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
13888295 GACGACTCGTTTTCT-TTTTTCACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
66 GACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* **
13888359 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGGCATGCGT
131 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT-GGCATGCAC
13888423 AAAAAAATTCAG-TAAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCA
195 AAAAAAATTCAGCT-AAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCA
**
13888487 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCGCTAAAATCTCAAATGCTCTTTAAGGGGGT
259 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
13888552 GTGAGTTCTCAAGGTTTGATGATGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCA
324 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCG
* * * * * * *
13888617 CACATCATGTGTGCACACCCCCCGGCCCCCCCAATTGACGAAACCCCAATGCCGCCGGTTAGGTT
389 CACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * *
13888682 CTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCCGCATCGGCACATGCCCGAGC
454 CTCC-GCGA-----CG-TGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * ** *
13888747 CCAGCATGTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
512 CCAGCATGTGCTGCCGCAACCCTCGGTCTAATCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * **
13888812 TAGACTGGGAATAAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTACGGGCGCTTAATAG
577 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCG
* * * * * *
13888877 ACCAGATGGGCGGGATGCCTAAGCTGAGGATCGACCGGGTCCCCCTCTACATGCTACTGATCCTG
642 ACCAGAGGGGCGGGATGCCCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCTG
*
13888942 CTACCACAACCCTCAGTCCTGTCCT-ATCTTAGAC-AGGGAATGAACTCCGTATGCCTAAGCCAA
707 CTACCGCAACCCTCAGTCCTGT-CTGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13889005 CTGACGAAACAAGCGGACGGGCGGGCGGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCGCAA
770 CCGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13889070 GCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATC
835 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
13889132 CCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
13889197 GACAACTTGTTTTCTATTTTTCATGATTTTTCAAACTTTTTGCGGTTC-AGATTTTTAAAAATTT
66 GACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * * * * * *
13889261 TTTTGGATGGTGCTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTGGGCATGCACA
131 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
13889326 AAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCTAT
196 AAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAT
*
13889390 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
261 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * ** *
13889455 GAGTTCTTGAGGTTTGATGAGGTATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCA
326 GAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGCA
* * *
13889520 CATCATGTGCGCACACCACTTAGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
391 CATCATGTGCGCACACCCCCT-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
13889584 T-C-C-A-GTGATGGTGCCCCAGTGAAGAAAAATACGGCACCAGCACATACCCAAGCCCAGCATG
455 TCCGCGACGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * * *
13889645 TGCTGTCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCTGTGTGCTTAGACTGG
520 TGCTGCCGCAACCCTCGGTCTAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
13889710 GAATGAACTCTGTATGCCTAAGTCATCTCACGAAACGAGCGTGCGGGGTGCTCAGCCGGCCAGAG
585 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAC-GGGCGCTCAACCGACCAGAG
* ** * * ** ** **
13889775 GGGAGGGATGCGTAAGCCGGGGATTGACCAGGTCCCCCTCTGTATTTTG-TAATCCTGCTACCGC
649 GGGCGGGATGCCCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCTGCTACCGC
* * *
13889839 AACCCTCAGT-CTGGTCTGATCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
714 AACCCTCAGTCCT-GTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
13889903 ACGAGCGGGCGGACGGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
778 ACGAGCGGGCGGGC-GGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
13889968 ATCAATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTGCCTGCCAATG
842 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
13890023 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
13890088 GATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTT
66 GACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* *
13890153 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATTCACA
131 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* * *
13890218 AAAAAATTCAGCAAAAAACACAAAGTGTACAAGATTTTGTGACCAATTGAAAAAAAATGTCCCAA
196 AAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCAA
* * * * * *
13890283 TTTTAGACACTGTAATAGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
260 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
13890348 TGAGTTCTCGAAGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCAC
325 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGC
* * * * * *
13890413 ACATCATGTGCGCACCCCCCCCCCGGCCCCCCCGATTGTTGGAAGCCCAATGCCGCCGATCAGGT
390 ACATCATGTGCGCA--CACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
13890478 TCTCCGACGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG
453 TCTCCG-CGA-----C-GTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
13890543 CGCAGCATGTGCTGCCGCAACCCTTGGTCTAATCTGATCTTAGATTGGGAATGAACTCCGTATGC
511 CCCAGCATGTGCTGCCGCAACCCTCGGTCTAATCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * ** *
13890608 TTAGACAGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGTATGCGGGCGCTCAACC
576 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACC
* * * * *
13890673 GGCCAGAGGGG-GGCGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCCATCC
641 GACCAGAGGGGCGG-GATGCCCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCC
** ** ** *
13890737 TGCTATTGCAACCCTTGGT-CTGGTCTGATCTTAGACTACAAATGAACTCTGTATGCCTAAGCCA
705 TGCTACCGCAACCCTCAGTCCT-GTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
13890801 ACCGACGAAACGAGCGGGCGGGCGGACGAGTGGGTGCTACGCCGGCCAGAGAGACAGGATGCACA
769 ACCGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
13890866 AGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
834 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
13890929 CCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
13890994 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTG
66 GACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
*
13891059 TTTCGGAAGGAGTTTTGGCCCC-AACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACA
131 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* *** * * *
13891122 AAAAAATTCAACTAAAAATTTAAAGCGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCAT
196 AAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAT
* *
13891187 TTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
261 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
13891252 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCA
326 GAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGCA
* * *
13891317 CATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAAAGCTGCGGGTCAGGTTCT
391 CATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-
* * *** * * * *
13891382 TCGGCGATGCTCTGGCAATGGTGCCCCAACGAAGAAAATTACGGCACCAGAACATGCCC-AACCC
455 TCCGCGA--C-GT-G--ATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * * *
13891446 TAGCATGTGCTGCCACAACCCTCAGTCCGATCCGATTTTAGATTGGGAATGAACTCCGTATGC
514 -AGCATGTGCTGCCGCAACCCTCGGTCTAATCTGATCTTAGACTGGGAATGAACTCCGTATGC
13891509 CTAAGCCAAT
Statistics
Matches: 2883, Mismatches: 345, Indels: 93
0.87 0.10 0.03
Matches are distributed among these distances:
889 4 0.00
890 220 0.08
891 359 0.12
892 429 0.15
893 1 0.00
894 142 0.05
895 2 0.00
896 40 0.01
897 2 0.00
898 4 0.00
899 3 0.00
900 5 0.00
901 322 0.11
902 566 0.20
903 182 0.06
904 57 0.02
905 25 0.01
906 292 0.10
907 228 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
CCGCGACGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCTAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGG
GCGGGATGCCCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCTGCTACCGCAA
CCCTCAGTCCTGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
AGCGGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
Found at i:13892227 original size:26 final size:26
Alignment explanation
Indices: 13892189--13892241 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13892179 ATGGTCTAAT
*
13892189 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
*
13892215 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
13892241 C
1 C
13892242 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:13893135 original size:26 final size:26
Alignment explanation
Indices: 13893099--13893149 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13893089 AGTCTGATCT
13893099 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
13893125 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
13893150 TTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:13894029 original size:26 final size:26
Alignment explanation
Indices: 13893993--13894045 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13893983 CTAATCTGAT
13893993 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
13894019 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13894045 C
1 C
13894046 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13894379 original size:897 final size:899
Alignment explanation
Indices: 13891453--13899462 Score: 9803
Period size: 897 Copynumber: 9.0 Consensus size: 899
13891443 CCCTAGCATG
* * * *
13891453 TGCTGCCACAACCCTCAGTCCGATCCGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13891518 TCGACGAAATGAGCGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
66 CCGACG-AA--A-CGAGGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
13891583 GCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATTTC
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCC
* *
13891647 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
13891712 TGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGGGGTTCAGGA-TTTTTAAAATTTTT
256 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
13891776 TCGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCATTAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAA
* * *
13891841 AAAAA-TCAGGTAAAAACTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
385 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13891905 ACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
450 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
13891970 AGTTCTCGAGGTTTGATGAGGGATAGAGGTCCAATATAAGGGCCAAGTACCAGCACCTATCGCAC
515 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13892035 ATCATGTG-GACACACACCCCCGGGCCCCC-CGATCG-TGGGAACTCTAATGCCGTCGATCAAGT
580 ATCATGTGCG-CACAC-CCCCC-GGCCCCCTCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGT
* *
13892097 TCTCCGACGA-----T--C----GTGCCCCGACGAAGAAAAATACGGCACCGGCACATGCTCGAG
641 TCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * ** *
13892151 CCCAGCATGTGCTACTGCAACCCTCGGTATGGTCTAATCTTAGACTAGGAATGAACTCCGTATGC
706 CCCAGCATGTGCTACTGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
*
13892216 TTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
771 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* ** * * *
13892281 GGCCAGAGGCGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCTCTCTGCATGCTGTCAATCC
836 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * ** * * *
13892345 TACTACCGCAACTCTCCGTTCGGTCCAATATTAGACTGAGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13892410 CCGACGAAACGAGCGGGCGGGGGGCGGGCGGCCGGGCACTACGCCGGCTAGAGAGGCGGGATGCC
66 CCGACGAAACGA-------GGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
13892475 CAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
124 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
13892540 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAA
189 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
13892605 GATGACTCGTTTTCTATTTTTCACT-ATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATT
254 GATGACTCGTTTTCTATTTTTCA-TGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
13892669 TTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGACATGCAC
318 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
13892734 AAAAAACTTCAACTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCCA
383 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
13892798 TTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
448 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
13892863 TGATTTCTCAAGGTTTGATGAGGGATA-GGGGCCTAATATAAGGACCAAGTACCAGCACCCATCG
513 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
13892927 CACATCATGTACGCACACCACCCCCCAGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAA
577 CACATCATGT--GCGCA-CACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGCCGTCGGTCAG
* * * * * * * *
13892992 GTTCTCAGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGTCCA
639 GTTCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
* * * * *
13893057 AGCCCAGTATGTGCTGCTACAACCCTCCGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
704 AGCCCAGCATGTGCTACTGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
13893122 GCGTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAG
769 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
13893187 -CGGACCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGT-CCTCTCTACGTGCTG-CTGA
834 TCGG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-GA
13893249 TCC
897 TCC
* * * * * * **
13893252 TGTTGCCGTAACCCTCAATCTGGTCTGATCTTAGACT-GGAATGAGCTTTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
13893316 CCGACGAAACGAGCGGACGGGCTGGCGGGCACTACGTCGGCCAGAGAGAGGGGATGCGCAAGTCG
66 CCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
13893381 TGGATCGATAGGGTGGTAGTTTGGTTTAGGCACATCTTCATATTTCTGAATGCTAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
13893446 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
* * * *
13893511 CATTTTTTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGA
261 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
13893576 AGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
13893641 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCGCCATTTCAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
13893706 ACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCT
456 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
13893771 TGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCACACATCATG
521 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
13893836 TGCGCACACCCCTCGGCCCCCTCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
586 TGCGCACACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* *
13893901 TACTCTGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
651 TGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
13893966 GCTGCTGTAA-CCTCAGTCTAATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGG
716 GCTACTGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
13894030 AATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCAGAGGC
781 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
* * * * *
13894095 ACGAGATGTGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGTGTGCTGTCAATCC
846 GCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
13894149 TGCTGTCACAACTCTCGGTCCGATCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13894214 CCGACGAAATGAGGGGGCGGGCGGGC-AGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCT
66 CCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * * **
13894278 TTGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTATGCACGGCAATGTTATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
13894343 AATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
** * ** * * **
13894408 TATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTCAAA
261 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
13894473 AGGCA-TTTTGGTCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
326 AGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
13894537 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
13894602 CACTTTAATGGCTATTGGCAGCAAGCCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGAGAGTTC
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
13894667 TCGAGGTTTGATGAGGGATAGCGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACACCAT
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
13894732 GTGCGCACA--------CCCCCT-GATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
585 GTGCGCACACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * *
13894788 ACGCTCTGGCGATGGTGCCCCGACGAAGAAACATGCGGCACCAGCACATGCCCGAGCCCAGCATG
650 ATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* *
13894853 TGCTA-TCGTAA-CC-C--TC--G---G-TC-----C----AAT---CT--G-AT-CTTAGACTA
715 TGCTACT-GCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
13894891 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAA
779 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAG
* **
13894956 GGGCGGGATGCGCAAGCCGGGGATCGATCGGG-CCCCCTTTTATGTGCTGTCGATCC
844 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC-TCTGCGTGCTGTCGATCC
* * * * *
13895012 TGCTGCTGCAACCCTCAATCTGGTCTGATCTTACACT--G--T---CTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13895070 CCGAC-AAA--A-TGAGTGGGCGGGCGGGCAGTACGCCGGCCAGAGAGATGGGATGCGCAAGCCG
66 CCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
13895131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCT-CATGCCAATGCCATTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTGCATGCCAATGCCATTT
*
13895195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGC-CGTGAAGTTTCATGGCAAGACGA
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT-CACGTGAAGTTTCATGGCAAGATGA
* * * * * *
13895259 CTCATTTTCTATTTTTCACGATTTTAAAAACTTTTTACAGTTCGGGAGTTTTTAAAATTTTTTTG
259 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
13895324 GAAGCAGTTTTGGCCCCAAACTTGGTTG-CGGTGATCCTTGTATTTTTTTTGGCATGCATAAAAA
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
13895388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
13895453 GACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
13895518 TCTCAAGGTTTGATGAGGGATAGGGGGGCAATATAAGGGCCAAGTACCAGTACCCATCACACAAC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * * *
13895583 ATGTGCGCACACCCCCCGGCCTTCT-GATCG-TCGGAACCCCAGTGCTGTCGGTCAGGTTCTCTG
583 ATGTGCGCACACCCCCCGGCCCCCTCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *
13895646 GCGATGCTCCGACGATGGTGCCCC-AGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
647 ACGATGCTCTGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * *
13895710 CATGTACTACCGCAACCCTCGGTC-CGATCCGATCTTAGACTGGGAATGAACTCCGTATACTTAG
711 CATGTGCTACTGCAACCCTCGGTCTAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* ** *
13895774 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAAGCGCTCATTCGGCC
775 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * * *
13895839 AGAGGGGCGGGATGCACAAGCTGGGGATCGATCGGGTCTCCCTCTGTGTGCTGCCGATCC
840 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
13895899 TGCTGCCGTAACCCTCAATTCCG-TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTC-AGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *** * * * *
13895963 ACCGACGAAATGAGCGGGTTAGCAGGTGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCC
65 ACCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
13896028 GTGGATCAATAGGGTAGTAGGTGGGTTTAGGTACAACTTCATATTTCTGCATGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
13896093 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCGAGATGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* ** * *
13896158 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTCTTCGG
260 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
13896223 AATGAGTTTTGG-CCCAAACGTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCGCACAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
13896287 TTCAGCTAAACACTCAAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
13896352 CACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTA
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
13896417 TCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTT
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** * * * *
13896482 GGTGCGCACCACCTCCCAGCCCCC-CGATCGTCTTAAACCCCAATGTCGATCGGTCAGTTTTTTC
585 -GTGCGCA-CACCCCCCGGCCCCCTCGATCG-CTGGAACCCCAATGCCG-TCGGTCAGGTTCTCC
** ** ** * ** * *
13896546 GGTGATGGGGC-CCCCA----AACGCGACG-AGAAAAAATACGGCA-CAGCACATG-CTGAGCCC
646 GACGAT-GCTCTGACGATGGTGCCCCGACGAAG-AAAAATACGGCACCAGCACATGCCCGAGCCC
* * * * * * **
13896603 AGCATTTGCTTACCGC-ACCCTCGATCTGGTCCGATCTTCGTATTGGGAATGAACTTTGTGATGC
709 AGCATGTGC-TACTGCAACCCTCGGTCTAGTCCGATCTTAG-ACTGGGAATGAACTCCGT-ATGC
* * * * * *
13896667 TCAGGAACTGGGAATTGAACTCTGTATTGCTTAAGTCAA--CACGAAAC-AGCCGTACAGACGCT
771 TTA-G-ACTGGGAA-TGAACTCCGTA-TGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGC-
* * * ** * * *
13896729 TCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGAAAGGGTCCCCTTCTGCCTGCT-AC
830 TCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC
13896793 TGATCC
895 -GATCC
* * * * *
13896799 TGCTACCGTAACTCTCTGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13896864 CCGACGAAACGAGCAAGCAGGCGGGCGGGCGAGCACTACGCCGGCTAGAGAGATGGGATGCGCAA
66 CCGACGAAACGAG---G-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * ***
13896929 GCCGTAGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
13896994 TTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGAT
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* * *
13897059 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGATTCGGGATTCTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
13897124 TGGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
13897189 AAATTTAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13897254 AGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
13897319 TTCTCGAGGTATGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGTACAT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** *
13897384 CAGGTACACACACCCCCCGGCCCCCTCGATCGCCAGAACCCCAATGCCGTCGCTCAGGTTCTCCG
582 CATGTGCGCACACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
** * * * *
13897449 GTGATGCT-TCGA-GATTGTGCCTCGATGAAGAAAAATACGGCACCAGCACATGCCCGACCCCAG
647 ACGATGCTCT-GACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * *
13897512 TATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
711 CATGTGCTACTGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
13897577 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCCCAG-CTGGCC
776 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GGCC
* * * * **
13897641 ATAGGGGCAGGATGCGCAAGCTGGAGATCGGCCGGGT-CCCC-CT-C-T-C---C-A---
840 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** * * *
13897689 TGCTGTCACAACCCTTGGT-CTAGTCTGATCTTAGACTGGGAATGAACTACATATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
13897753 ACTGAC-AAACGAGCGGGCGGACGGGCGGGCACCACCCCTGCCAGTGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * **
13897817 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGTCAATGAAATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
13897882 TTATGGCTTGTAAATTCATACAATGTTCCCTTAAG-GTTCACATGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* * *
13897946 TCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAACTTTTTCGA
260 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
13898011 AAAGAGTTTTTGG-CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
325 AAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
13898075 ATTCAGTTAAAAGCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
13898140 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
13898205 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
519 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * ** * * * * *
13898270 TGTGCGTACACCCCCCGG-GCCCGCAATTGCCAGAACCCTAGTGCCGCCAGTCAGGTTCTCTGAC
584 TGTGCGCACACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* ** ** * * * *
13898334 GATGCTCCGGTGACAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACCTGCTCGAGCCTAGCAT
649 GATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
13898399 GTGCT-GTCGTAACCCTTGGT-TAGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
714 GTGCTACT-GCAACCCTCGGTCTA-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * ** *
13898462 TGGGAGTGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGCTCAGTCGACCAG
777 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * * ** *
13898527 AGGGGCGGGATGCGTAAGTCGAGGATCGAAAGGGTCCCCCTCTGCGTGCT-ACTGATCC
842 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-GATCC
* ** * * * * * * * *
13898585 TACTATCACAACGCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTAAGCCGA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13898650 CCGACGAAACGAGGAGGCGGGCGGATGGGCGAGCACTATGCCGGCCAGAGAGACAGGATGCGCAA
66 CCGACGAAACGAGGGGGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** * * *** *
13898715 GATGTGCATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
13898780 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* * * ** *
13898845 GACTTGTTTTCTATTTTTTACGATTTTCAAAACTTTTTACAATTCGGTATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *** * *
13898910 TGGAAGGAGTTTTGGCCCCAAAATAGGTAGAAACGATCCTCGTATTTTTTTTGG-ATTGCACAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA-TGCACAAA
* *
13898974 AAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13899039 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
13899104 GTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATGTAATGGCCAAGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13899169 TCATGTGCGCACA-CCCCCGGCCCACC-CGATC-ATCGGAACCCCAATGCTGCCGGTCAGGTTCT
581 TCATGTGCGCACACCCCCCGGCCC-CCTCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
13899231 CCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCAGCAGCACATG-CTGAACCC
644 CCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * * * * *
13899295 GGCATGTGCTGCTGCAAACCTTGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
709 AGCATGTGCTACTGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
13899360 GACTGGGAATGAACTCTGTATGCCTAACTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGC
774 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* * * *
13899425 TAGAGGAGCGGGATGCGCAAGCCGTGGATCGATAGGGT
839 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
13899463 GGTAGTTGGG
Statistics
Matches: 6141, Mismatches: 802, Indels: 341
0.84 0.11 0.05
Matches are distributed among these distances:
852 12 0.00
853 447 0.07
854 2 0.00
855 3 0.00
856 24 0.00
859 1 0.00
860 1 0.00
861 104 0.02
862 7 0.00
863 137 0.02
864 3 0.00
865 3 0.00
866 1 0.00
867 2 0.00
870 4 0.00
871 2 0.00
874 1 0.00
876 1 0.00
879 2 0.00
880 4 0.00
883 44 0.01
884 509 0.08
885 143 0.02
886 4 0.00
887 141 0.02
888 120 0.02
889 18 0.00
890 56 0.01
891 4 0.00
892 58 0.01
893 2 0.00
894 28 0.00
895 392 0.06
896 336 0.05
897 917 0.15
898 296 0.05
899 366 0.06
900 280 0.05
901 334 0.05
902 459 0.07
903 50 0.01
904 238 0.04
905 250 0.04
906 69 0.01
907 79 0.01
908 187 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
TGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTACTGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
Found at i:13895772 original size:26 final size:26
Alignment explanation
Indices: 13895743--13895793 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13895733 CCGATCCGAT
13895743 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
13895769 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13895794 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:13897581 original size:26 final size:26
Alignment explanation
Indices: 13897545--13897597 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13897535 CTGGTCTGAT
13897545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13897571 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13897597 C
1 C
13897598 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13899366 original size:26 final size:26
Alignment explanation
Indices: 13899330--13899382 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13899320 CCAGTCCAAT
13899330 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13899356 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13899382 C
1 C
13899383 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13900088 original size:26 final size:26
Alignment explanation
Indices: 13900052--13900104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13900042 CCGATCCAAT
*
13900052 CTTAGACTGGGAATAAACTCGGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
13900078 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13900104 C
1 C
13900105 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13900979 original size:26 final size:26
Alignment explanation
Indices: 13900943--13900995 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13900933 CCAGTCCAGT
13900943 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13900969 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13900995 C
1 C
13900996 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13901296 original size:891 final size:890
Alignment explanation
Indices: 13899356--13903633 Score: 5622
Period size: 890 Copynumber: 4.8 Consensus size: 890
13899346 ACTCCGTATG
* * * * * *
13899356 CTTAGACTGGGAATGAACTCTGTATGCCTAA-CTCAACCCACGAAATGAGCGTGCGGGCGCT-CA
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGC-CAACCGACGAAACGAGCGGGCGGGCACTAC-
* * * *
13899419 GCCGGCTAGAG-GAGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTTGGGTTTAGACACA
64 GCCGGCCAGAGAGA-CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
13899483 TCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAG
128 TCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
13899548 CCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTT
193 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * *
13899613 GCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATC
258 ACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
13899678 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
323 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
13899743 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGTAAAAT
388 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
13899808 CTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAG
453 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
13899873 GGCTAAGTACCAGCACTCATCGCACATCATGTGCGCATAACCCCCCGGCCCCCCCGATCGCCGGG
518 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCCCCCGG-CCCCCCGATCGTCGGA
* *
13899938 ACCCCAATGCCGCCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGATGAAGAAAAA-
581 ACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * *
13899991 AGGGACACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAAGCCTCGGTCC-GATCCA-ATCT
646 ACGG-CACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAG-TCCAGATCT
* *
13900054 TAGACTGGGAATAAACTCGGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
709 TAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
13900119 GAAACGAGCGTGTGGGCACTCAGCCGGCCAGAGGGCCGGGATGCACAAGCCAGGGATCGACCGGG
774 GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCA-AAGCCAAGGATCGGCCGGG
* *
13900184 TCCCCCTC-AGCGTGCTGTCGATCCTGCTG-TGGCAACCCTCAGTCCGGTCC-ATT
838 TCCCCCTCTA-CATGCTGTCGATCCTGCTGCT-GCAACCCTCGGTCCGGTCCGA-T
* ** * *
13900237 CTTAGACTGGGAATGAACTCCACATGCCTAAGGCAACCGACGAAACGAGCGGGCAGGCACTACGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGC
* * * *
13900302 CAGCCAGAG-GAACGGGATGCATAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
66 CGGCCAGAGAG-ACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
13900366 TTCATATTT-T-TGCATGCCAATG-CATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAG
130 TTCATATTTCTATG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
13900428 CCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTT
193 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
13900493 ACGGTTTGAGATTTTTTTAAAATTTCTTCGAAAGGAGTTTTGGCCCCAAACATGGTAGACGTGAC
258 ACGGTTCGAGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
13900558 CCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCAAAAAACTCAAAGTGTACAAGATTTTGT
322 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
13900623 GACCATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
387 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
13900688 TCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATCAGGGATAGGGGGCCAATATAA
452 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
13900752 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCTGGACCCCCCAATCGTCGG
517 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GG-CCCCCCGATCGTCGG
* * *
13900817 AACCCCAATGCTACCGATCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
580 AACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * *
13900882 -ATTGGCACCAGCACTTGCCCAAGCCCAGCATGTGCTACCGTAACCCTCAGTCCAGTCCAG-TCT
645 TA-CGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCCAGATCT
* *
13900945 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
709 TAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
13901010 GAAACGAGCGTGCGGGCGCTCCGTCGGCCAGAGGGGCGGGATGCGAAAGTCAAGGATCGGCCGGG
774 GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC-AAAGCCAAGGATCGGCCGGG
* *
13901075 TCCCCTTCTACAT-CTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCCGAT
838 TCCCCCTCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCGAT
* *
13901127 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCACTACAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGC
*
13901192 CGGCCAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
66 CGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
13901257 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
131 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
13901322 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTGGAAACTTTGTACG
196 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * * * * *
13901386 GTTTGGGATTTTTCAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTTGTAGACCTGATCCTT
261 GTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
13901451 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
326 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
13901516 ATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGCCAG-AAACCTGTAAAATCTC
391 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
13901580 AAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
456 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* **
13901645 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCTT
521 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC
* * * * * * * ** **
13901710 AATGTCACCGGTCAAGTTCTCTGGCGATGCTACGACGATGGTGCGCTGGTGAAGAAAAATGTGGC
586 AATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGC
* * * *
13901775 ACCAGCACATG-CCAGAGCCCAGCATATGCTGCCGTAACCCTCGGTCCGGTCC-GATCTTAGAGT
651 ACCAGCACATGCCCA-AGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCCAGATCTTAGACT
*
13901838 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
715 GGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * ** * * ** **
13901903 AGCGTGTGAGTGCTCAGCCGGCCAGATGGGCAGGATGCAAAAGCTGAGGATCGGTTGGGTCCCCC
780 AGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC-AAAGCCAAGGATCGGCCGGGTCCCCC
* * * * * ***
13901968 TTTGCGTGCTGTCAATCTTGCTGCCATAACCCTCAGTTCAGTCCGGTCCGAT
844 TCTACATGCTGTCGATCCTGCTGCTGCAACCCTC-G----GTCCGGTCCGAT
*
13902020 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAGCCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGGCGGG
* * * *
13902085 CGGGAACTATGTCGGCCAGAGAGACGAGATTCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
58 C----ACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
13902150 TTAGGCACATCTTCATATTTCTACGTGCCAATGCTATTTTTATGGCTTGTAAATTTATACAATGG
119 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
13902215 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATTATTTTT-
184 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * **
13902279 AAAATATTTTACGGTTCGGGATGTTTTAAAATTCTTTC-AGAAGGAGTTTTGGCCCTGAACTTGG
249 AAACT-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGG
* * *
13902343 GAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTAC
312 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
13902408 AAGATTTTGTGACCGTTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAA
377 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
13902473 ACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGG
442 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
13902538 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGCCCCC
507 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGG-CCCC
* * * * * *
13902603 CCGATCGTC-GAACCCCATTACCGCTGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCG
569 CCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * * *
13902667 ACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCTTCAATCTA
634 ACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCA
* * * * *
13902732 GT-CTGATCTTAGACTCGAAATAAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
699 GTCCAGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * **
13902796 GTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCTCAAGCCGGGG
764 GTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC-AAAGCCAAGG
* * * *
13902861 ATCGGTCGGGTCCCCCTCT--A--C-GT-G---CTGC--C-GTAACCCTTGGTCCGGTCCAAT
828 ATCGGCCGGGTCCCCCTCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCGAT
**
13902912 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATTAAACGAGCAGGCGGGTGGGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GC----GGGCGGG
* *
13902977 CGGACATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
58 C--AC--TACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
**
13903042 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
119 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
13903107 TCCCTTAA-CCTTCACGTGAA-TTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
184 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
13903170 AAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCGGAAGTAGTTTTGGCCCCAAACTTGGTA
249 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
13903235 GACGTGATCCTTGTATTTTTGTTGGCATGGAAAAAAAAATTCAGCTAAAAACTCGATGTGTACAA
314 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
13903300 GA-TTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGAAACAAAC
379 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
13903364 CTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAAGTATAGGGGGC
444 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
13903429 CAATATAAGGGCCAAGTACCATCACCCATTGCACATCATGTGCACACAACCCCCCCGGCCCTCCC
509 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCCC-CCC
* * * * * *
13903494 GATCGTCGAAACCCTAATGCCACTGGTCAGGTTCTTC-AGTGATGCTCC-AGCGATGGTGCCCCA
571 GATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGA-CGATGCTCCGA-CGATGGTGCCCCG
* * * * * **
13903557 ACAAAGAAAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCTGTCTG
634 ACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCA
13903622 GTCC-GATCTTAG
699 GTCCAGATCTTAG
13903634 GCTAAGAATG
Statistics
Matches: 3011, Mismatches: 309, Indels: 145
0.87 0.09 0.04
Matches are distributed among these distances:
879 9 0.00
880 224 0.07
881 311 0.10
882 2 0.00
883 1 0.00
886 4 0.00
887 238 0.08
888 56 0.02
889 421 0.14
890 455 0.15
891 313 0.10
892 193 0.06
893 57 0.02
894 1 0.00
895 1 0.00
896 1 0.00
897 7 0.00
898 1 0.00
900 3 0.00
901 10 0.00
904 2 0.00
905 181 0.06
906 170 0.06
907 112 0.04
908 6 0.00
909 217 0.07
910 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
GTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC
AATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGC
ACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCCAGATCTTAGACTG
GGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCAAAGCCAAGGATCGGCCGGGTCCCCCTC
TACATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCGAT
Found at i:13901859 original size:26 final size:26
Alignment explanation
Indices: 13901830--13901882 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13901820 CCGGTCCGAT
*
13901830 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13901856 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13901882 C
1 C
13901883 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13902783 original size:26 final size:26
Alignment explanation
Indices: 13902739--13902791 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13902729 CTAGTCTGAT
13902739 CTTAGACTCGAAATAAACTTCGTATG
1 CTTAGACTCGAAATAAACTTCGTATG
* * *
13902765 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTCGAAATAAACTTCGTATG
13902791 C
1 C
13902792 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTCGAAATAAACTTCGTATG
Found at i:13904089 original size:503 final size:503
Alignment explanation
Indices: 13903142--13904151 Score: 1451
Period size: 503 Copynumber: 2.0 Consensus size: 503
13903132 AGGCAAGACG
** * *
13903142 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTC
1 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTGTAAAATTTTTTC
* * *
13903207 GGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGAAAAAAA
66 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
* * * *
13903272 AATTCAGCTAAAAACTCGATGTGTACAAGATTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAG
131 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAA
*
13903337 ACACTTTAATGACTACTGGAAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTT
196 ACACTTTAATGACTACTGGAAACAAACCTGCAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTT
* * *
13903402 CTCGAGGTTTGATGAAGTATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATTGCACATCA
261 CTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
13903467 TGTGCACACAACCCCCCCGGCCCTCCCGATCGTCGAAACCCTAATGCCACTGGTCAGGTTCTTCA
326 CGTGCACACAACCCCCCCGGCCCCCCCGATCGTCGAAACCCTAATGCCACTGGTCAGGTTCTTCA
* * *
13903532 GTGATGCTCCAGCGATGGTGCCCCAACAAAGAAAAATACGACACCAGCACATGCCCGAG-CCTAG
391 GCGATGCTCCAGCGATGGTACCCCAACAAAGAAAAATACGACACCAACACATGCCCGAGACC-AG
* * * *
13903596 CATGTGCTGCCGTAACCCTCTGTCTGGTCCGATCTTAGGCTAAGAATGA
455 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGA
* * *
13903645 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGAGATTTTGTAAAATTTTTTC
1 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTGTAAAATTTTTTC
* * *
13903710 GGAAGGAGTTTTAGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAACA
66 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAA
*
13903775 AAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
130 AAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
* * *
13903840 AAACACTTTAAT-AGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
194 AAACACTTTAATGA-CTACTGGAAACAAACCTGCAAAATCTCAAATGCTCTTTAAGGAGGTGTGA
*
13903904 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
258 GTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13903969 TCACGTGCGCAC-A-CCCGCCGGCCCCCCCGATCG-CTGGAACCCTAATGCCA-TCGGTCAGGTT
323 TCACGTGCACACAACCCCCCCGGCCCCCCCGATCGTC-GAAACCCTAATGCCACT-GGTCAGGTT
* * * ** * *
13904030 C-TCTGGCGATGCTCC-GACGATGGTACCCCGACGAAGAAAAATGTGGCACCAATACATGCCCGA
386 CTTC-AGCGATGCTCCAG-CGATGGTACCCCAACAAAGAAAAATACGACACCAACACATGCCCGA
* * **
13904093 GACCAGCATGTGCTGTCGCAGCCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
449 GACCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGA
13904148 ACTC
1 ACTC
13904152 CGTATGCTTA
Statistics
Matches: 450, Mismatches: 49, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
502 5 0.01
503 249 0.55
504 37 0.08
505 159 0.35
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (503 bp):
ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTGTAAAATTTTTTC
GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAA
ACACTTTAATGACTACTGGAAACAAACCTGCAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTT
CTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
CGTGCACACAACCCCCCCGGCCCCCCCGATCGTCGAAACCCTAATGCCACTGGTCAGGTTCTTCA
GCGATGCTCCAGCGATGGTACCCCAACAAAGAAAAATACGACACCAACACATGCCCGAGACCAGC
ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGA
Found at i:13904161 original size:26 final size:26
Alignment explanation
Indices: 13904132--13904184 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13904122 CCGGTCCGAT
13904132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13904158 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13904184 C
1 C
13904185 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13905085 original size:26 final size:26
Alignment explanation
Indices: 13905033--13905085 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13905023 CCAGTCCGAT
* * * *
13905033 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAACGAACTCCGCATG
13905059 CTTACACTGGGAACGAACTCCGCATG
1 CTTACACTGGGAACGAACTCCGCATG
13905085 C
1 C
13905086 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAACGAACTCCGCATG
Found at i:13905536 original size:903 final size:898
Alignment explanation
Indices: 13903645--13905960 Score: 3358
Period size: 903 Copynumber: 2.6 Consensus size: 898
13903635 CTAAGAATGA
* * * *
13903645 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTC-GAGATTTTGTAAAATTTTTT
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTT
* * * *
13903709 CGGAAGGAGTTTTAGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAC
65 CGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCATTGTATTTTTATTGGCATGCACAAA-
*
13903774 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
129 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
* *
13903839 CAAACACTTTAATAGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
194 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
13903904 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
259 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
13903969 TCACGTGCGCACACCCGCCGGCCCCCCCGATCGCTGGAACCCTAATGCCATCGGTCAGGTTCTCT
324 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * *
13904034 GGCGATGCTCCGACGATGGT-ACCCCGACGAAGAAAAATGTGGCACCAATACATGCCCGAGACCA
389 GGCGATGCTCCGACGATGGTGA-CCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCA
* * *
13904098 GCATGTGCTGTCGCAGCCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
453 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAC
* * * * * * *
13904163 ACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGTGCTCAGCCGGAC
518 ACTGGGAACGAACTCCGCATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGAC
* * * ** *
13904228 AGGGGGGCGAGATGCGCAAGCCTGGGATCGGTCGGTCCCCCTCTACGTGCTGCTGATCCTGCTAC
583 AGAGGGGCGAGACGCACAAGCCTGGGATCACTCGGTCCCCCTCTACGTGCTGCCGATCCTGCTAC
* *
13904293 CGCAACCCTCCATCCGATCCAATCTTAAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGAC
648 CGCAACCCTCCATCCGATACAATCTTAAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGAC
* * * *
13904358 AAAATGAACGGGCGGGCGGGCGGGCACTACGTCCGCTAGAGAGGAGGGATGCGCAAGCCGTGGAT
713 AAAATGAACGGGCGAGCGGGCGGGCACTACG-CCGCTAGAGAGGAGGAATGCGCAAACCGTGCAT
*
13904423 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCATCATGCCAATGCCATTTTTATGG
777 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCATCATGCCAATGCCATTTTTATGG
* * * *
13904488 TTTGTGAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
842 CTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACG
13904545 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTA-GATTTTTTAAAATTTTTT
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTT
* * * * * * *
13904609 CGGAACGCGTTTTGGCCCCAAACTTGGTAGACTTGATCATTATGTTTTTATTGGCATGCGCAAAA
65 CGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCATTGTATTTTTATTGGCATGCACAAAA
*
13904674 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
130 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
* *
13904739 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
195 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** **
13904804 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTTCCCATCATACAT
260 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
13904869 CATGTGCGGACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
325 CATGTGC-G-CACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** ** *
13904934 CGGCTATGCTCCGGTGATGGTGACCCGGTGAAGAAAAATGTGGCACCAGCACAAGCTCGAGCCCA
388 CGGCGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCA
* *
13904999 GCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAC
453 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAC
* *
13905064 ACTGGGAACGAACTCCGCATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCGGGCC
518 ACTGGGAACGAACTCCGCATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGAC
*
13905129 AGAGGGGC-AGGACGCACAAG-CTGGGGATCAACTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
583 AGAGGGGCGA-GACGCACAAGCCT-GGGATC-ACTCGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * ** * * * * *
13905192 TGCCGCAACCTTCGGTCCGGTATAATCTT-AGACTGGGAATGAAGTTCGTATACCTAGGCCAACC
645 TACCGCAACCCTCCATCCGATACAATCTTAAGACTGGGAATGAACTCCGTATACCTAAGCCAACC
** * *
13905256 GACGAAACGAGTGGGCGGGCGAGCGGGTGGGCACTAC-CGGCTAGAGA-GACGGAATGCGCAAAC
710 GAC-AAA--A-TGAACGGGCGAGCGGGCGGGCACTACGCCGCTAGAGAGGA-GGAATGCGCAAAC
*
13905319 CGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATCTC-TACATGCCAATGCCAT
770 CGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCAT-CATGCCAATGCCAT
*
13905383 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGATG
834 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACG
*
13905448 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
** * * *
13905513 CAAAGGATTTTTTGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAAA
66 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCATTGTATTTTTATTGGCATGCACAAAAA
* * *
13905578 AATTCAGCTAAAAACTCGAAGTTTACATGATTTTGTGACCATTTGAAAAAAATGT-CCACATTTC
131 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCA-ATTTC
* *
13905642 AAACAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
195 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
13905707 TTATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACAT
260 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
13905772 CATGTGCGCACACCCCTCGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
325 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * **
13905837 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCAT-GAGCCCAG
390 GCGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGTGGCACCAGCACATGC-TCGAGCCCAG
* * * *
13905901 CATGTGCTGCCACAACCCTCGGTCTGGTGCGATCTTAGACTAGGAATGAACTCCGTATGC
454 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
13905961 CTAAGCCAAC
Statistics
Matches: 1262, Mismatches: 137, Indels: 33
0.88 0.10 0.02
Matches are distributed among these distances:
899 191 0.15
900 116 0.09
901 431 0.34
902 64 0.05
903 437 0.35
904 1 0.00
905 22 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCATTGTATTTTTATTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCA
AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
CGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTACACT
GGGAACGAACTCCGCATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGACAGA
GGGGCGAGACGCACAAGCCTGGGATCACTCGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGC
AACCCTCCATCCGATACAATCTTAAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACAAA
ATGAACGGGCGAGCGGGCGGGCACTACGCCGCTAGAGAGGAGGAATGCGCAAACCGTGCATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCATCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACG
Found at i:13907056 original size:718 final size:712
Alignment explanation
Indices: 13905216--13907383 Score: 3148
Period size: 714 Copynumber: 3.0 Consensus size: 712
13905206 GTCCGGTATA
* * * * *
13905216 ATCTTAGACTGGGAATGAAGTTCGTAT-ACCTAGGCCAACCGACGAAACGAGTGGGCGGGCGAGC
1 ATCTTAGACTGGGAATGAACTCCGTATGA-CTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGC
* * * * *
13905280 GGGTGGGCACTA--CCGGCTAGAGAGACGGAATGCGCAAACCGTGCATCGATAGGGTGGTAGGTG
64 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
13905343 GGTTTAGGCACATCTTCTTATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
129 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAA
* *
13905408 TGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTT
* * * *
13905473 TTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCCAAAGGATTTTTTGCCCCAAACTTG
259 TTGAAACTTTTTACGTTTGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCCAAACTTG
* *
13905538 GTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTTTA
323 GTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
13905603 C-ATGATTTTGTGACCATTTGAAAAAAATGTCCACATTTCAAACAGTTTAATGGCTACTGGCAGC
388 CAAT-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
*
13905667 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTATCGAGGTTTGATGAGGGATAGG
452 AAACCTGTAAAATCTAAAATGCTCTTTAAGGG-GTGTGAGTT-TCGAGGTTTGATGAGGGATAGG
* *
13905732 GGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCTCGGCCCCC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCC
** *
13905797 CCGATTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
579 CCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCG
* * *
13905862 ACGAAGAAAAATGCAGCACCAGCACATGCATGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTG
644 ACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGT-TC
*
13905927 GTGCG
708 GTCCG
* * *
13905932 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGTGGGCGG
1 ATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGG
* *
13905994 GCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
13906059 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAAAAATG
131 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATG
*
13906124 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTT
* * * * * *
13906189 GAATA-TTTTTCCGGTCTGGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTTGCCCCAAACTTGG
261 GAA-ACTTTTTAC-GTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCCAAACTTGG
** * *
13906253 TAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
324 TAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
13906318 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAA
389 AATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
* *
13906383 ACGTGTAAAATCTAAAATGATCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTAAAATGCTCTTTAAGGGG-TGTGAGTT-TCGAGGTTTGATGAGGGATAGGGG
* * * *
13906448 GCCAATATAAGAGCCAAGTACCACCACCCATTGCACATCATGTGCGCACACCCCCCGACCCCCTC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-C
* ** * * * *
13906513 GATCACCGGAACCCCAATTTCGCCGGTCAGGTCCTCCGGTGATGCTCCGGCGATGGCGCCCCGAC
581 GATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGAC
* * * * *
13906578 AAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTCAGT
646 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTTC-GT
13906643 CCG
710 CCG
* * *
13906646 ATCTTAGACTGGGAATGAACTCTGTATGACTAAGCCAACCGATGCAACGAGCGGGCGAGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCG-GCGGGCG
* *** *
13906711 GGCGGGCACTACGCCAGCCAGAGAGACGGGATATACAAGCCGTGGATCGATAGGGTGGCAGGTGG
65 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
13906776 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAAT
130 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAAT
*
13906841 GGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
* * *
13906906 TGAAACTTTTTACGATTTGAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCTAAACTTGG
260 TGAAACTTTTTACG-TTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCCAAACTTGG
* * *
13906971 TACACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAGGTGAAC
324 TAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
13907036 AATATTTTGTGACCATTTGAAAAAAGTATCCCTATTTCAAACACTTTAATGGCTACTGGCAGCAA
389 AATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
13907101 ACCTGTAAAATCTAAAATGCTCTTTAAGGGG-GT--G--T-GA-GTTCT--TGAGGGATAGGGGG
454 ACCTGTAAAATCTAAAATGCTCTTTAAGGGGTGTGAGTTTCGAGGTT-TGATGAGGGATAGGGGG
*
13907157 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACAACCCCCCCGGCCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCC
* * *
13907222 TGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGACGATGGTACCTCGA
581 -GATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
*
13907287 CGAAGAAAAAT-CTGGCACCAGCACATGTCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTTCG
645 CGAAGAAAAATGC-GGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTTCG
*
13907351 ATCTG
709 -TCCG
13907356 ATCTTAGACTGGGAATGAACTCCGTATG
1 ATCTTAGACTGGGAATGAACTCCGTATG
13907384 CTTAGACTGG
Statistics
Matches: 1294, Mismatches: 137, Indels: 48
0.87 0.09 0.03
Matches are distributed among these distances:
708 58 0.04
709 7 0.01
710 154 0.12
711 1 0.00
712 16 0.01
713 7 0.01
714 607 0.47
715 4 0.00
716 48 0.04
717 3 0.00
718 389 0.30
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
ATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGG
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTT
GAAACTTTTTACGTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCCAAACTTGGTA
GACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
TATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTAAAATGCTCTTTAAGGGGTGTGAGTTTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCA
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTTCGTCCG
Found at i:13907394 original size:26 final size:26
Alignment explanation
Indices: 13907358--13907409 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13907348 TCGATCTGAT
*
13907358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13907384 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13907410 TGTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13908692 original size:874 final size:873
Alignment explanation
Indices: 13906619--13909674 Score: 3857
Period size: 873 Copynumber: 3.5 Consensus size: 873
13906609 GCCCAGCATG
* * * *
13906619 TGCTGCCGCAACCCTTGGTTC-AGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGACTAAGCC
1 TGCTGCCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCC
* * * **
13906682 AACCGATGCAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATATAC
64 AACCGATGAAACGAG-AGG-G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCAC
* *
13906747 AAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
126 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
13906812 CATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAG
191 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** * * *
13906877 ATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTTGAGATTTTTTTAAATTTT
256 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
13906942 TTCGAAAGGAGTTTTGGCCCTAAACTTGGTACACGTGATCATTGTATTTTTGTTGGCATGCACAA
321 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * * *
13907007 AAAAATTCAGCTAAAAACTCGAGGTGAACAATATTTTGTGACCATTTGAAAAAAGTATCCCTATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
* *
13907072 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGG-GT--
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGA
13907134 G---T-GA-GTTCT--TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
516 GTTCTCGAGGTT-TGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCAC
* * *
13907192 ACCATGTGCGCACAACCCCCCCGGCCCCCCTGATCATCGGAACCCCAATGCCGCCGGTCAGGTTC
579 ATCATGTGCGCAC-ACCCCCCCGACCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * ** * *
13907257 TCCGATGATGCT-CTGACGATGGTACCTCGACGAAGAAAAATCTGGCACCAGCACATGTCTGAGC
642 TCCGATGATGCTCCTGACGATGGTGCCCCGGTGAAGAAAAATC-GGCACCAGCACATGCCCGAGC
13907321 CCAGCATGTGCTGCCACAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCT
706 CCAGCATGTGCTGCCACAA--C-C----C--TC-GA---T-G-C--GG---G---TCCG-AT-CT
* ** * * * * *
13907386 TAGACTGGGAATGAACTCCATATGTGTAAGTCAACACACGAAACGAGCGTGCGAGCGCTCAGCCG
746 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGACA
* * ** *
13907451 GCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCA
811 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCA
** * * * * * * * * *
13907514 TGCTGCCATATCCCTCGATCTGGTCCAATCTTAGACTGGGAGTAAACTCCGTATTCCTAAGCGAA
1 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * * * * * **
13907579 CCGAAGAAACG-TA----CGGGCTGGTGGGCACTACGCCGGCCAGTGAGCCAGGATGCGTAAGTC
66 CCGATGAAACGAGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGTC
* * * * *
13907639 GTGGATCAATAGGGTGGAAGGTGGGTTTAGGCACATCTGCATATTTCTGCGTGCCAATGCCATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
13907704 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
13907769 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTTAAATTTTTTCG
261 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCG
* * * * *
13907833 GAAGGTGTTTTTGCCCCAAACTTGGTAGACGTGATCCCTGTCTTTTTGTTGAG-ATGCACAAAAA
325 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG-GCATGCACAAAAA
* *
13907897 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTA
389 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
* *
13907962 GACACTTTAATGGCTACTGGCAGCAAACCCGTAAAATCTCGAATGCTCTTTAAGGCGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGT
13908027 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATC
* * *
13908092 ATGTGCGCACACCCCCCCCGACCCCACCGATCGCCGGAACCCCAATGCCGCCGGTCCGGTTCTCT
582 ATGTGCGCACA-CCCCCCCGACCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
13908157 GACGATGCTCCTG-CGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCA-ATGCCCGAGCCCA
645 GATGATGCTCCTGACGATGGTGCCCCGGTGAAGAAAAAT-CGGCACCAGCACATGCCCGAGCCCA
* * *
13908220 GTATATGCTGCCACAACCCTCGATGC-GGTCCGATCTTAGACTGGGAATCAACTCCGTATGCCTA
709 GCATGTGCTGCCACAACCCTCGATGCGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
13908284 AGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGTGGGATGCGCAAGCCGAG
774 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGACAGCCAGAGGGGCGGGATGCGCAAGCCGAG
* *
13908349 GATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCT
839 GATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCA
* * *
13908384 TGCTGCAGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTATGCCAA
1 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * *
13908449 CCGATGAAATGA-AGGGGCGGGCGGGCGGGCATTAGGCCGGCCAGAGAGTCGGGATGCACAAGTC
66 CCGATGAAACGAGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGTC
* * *
13908513 GTGGATCGATATGGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTCTCCATGCCAATGCCATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
13908578 TTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*** * * *
13908643 TCGTTTTCTATTTTTCACGATTTTTGGAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGG
261 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
** *
13908708 AAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCATAAAAAAA
326 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
13908772 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
391 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
* * *
13908837 CACTTTAATGGCTACAGGCAGCAAACGTGTAAAATCTCAAATGATCTTTAAGGGGCTGTGAGTTC
456 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTC
* *
13908902 TCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACATCAT
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-GCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
13908967 GTGCGCGCACCCCCCCAACCCCCCCGATCGTCGGAACCTCAATGCCGCCGATCAGGTTCTCCGGT
584 GTGCGCACACCCCCCCGA-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
* * * * *
13909032 GATGCTCC-GACGATGGCGCCCCAGTGAAAAAAAATACGGCACCAGTACATGCCCGGGCCCAGCA
648 GATGCTCCTGACGATGGTGCCCCGGTGAAGAAAAAT-CGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
13909096 TGTGTTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
712 TGTGCTGCCACAACCCTCGATGCGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
13909160 CAACCCATGAAACGAGCGTGCGGGCGTTCA-ACAAGCCAGAGGGGCGGGATGCGCAAGTC-AGGG
777 CAACCCATGAAACGAGCGTGCGGGCGCTCAGAC-AGCCAGAGGGGCGGGATGCGCAAGCCGA-GG
* * *
13909223 ATCGACCGAGTCCCCCTCTGCGTGCTACCGATCC
840 ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCA
* ** * * * *
13909257 TGCTGCCGTAACCCTCGATTTGGTCCGATCATAGACTAGGAATGAACTTCGTACGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * **
13909322 CCAACGAAACGAGTAGGCGGGCGGGCAGGTGAGCGGGCACTTCATCGGCCAGAGAGACGGGATGC
66 CCGATGAAACGAG-A-G-GGGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
13909387 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
124 ACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
13909452 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
189 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
13909517 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
254 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
** ** * * *
13909582 TTTTCGAAAGGAGTTTTGGCCTGAAACTTCATAGACGTGATCCTTTTATTTTTCTTGGCATTCAC
319 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
13909647 AAAAAAAATTTAGCTAAAACCTTGAAGT
384 -AAAAAAATTCAGCTAAAAACTCGAAGT
13909675 ATTTCTACGT
Statistics
Matches: 1886, Mismatches: 231, Indels: 100
0.85 0.10 0.05
Matches are distributed among these distances:
870 173 0.09
871 3 0.00
872 93 0.05
873 426 0.23
874 257 0.14
875 2 0.00
876 1 0.00
877 8 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 257 0.14
882 10 0.01
883 25 0.01
886 3 0.00
887 377 0.20
888 3 0.00
889 3 0.00
891 1 0.00
893 1 0.00
894 2 0.00
895 59 0.03
896 30 0.02
897 143 0.08
898 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
CCGATGAAACGAGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGTC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGAT
GCTCCTGACGATGGTGCCCCGGTGAAGAAAAATCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCACAACCCTCGATGCGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGACAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGAC
CGGGTCCCCCTCTGCGTGCTGCCGATCA
Found at i:13909858 original size:239 final size:239
Alignment explanation
Indices: 13909435--13909915 Score: 881
Period size: 239 Copynumber: 2.0 Consensus size: 239
13909425 CACATCTTCA
13909435 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
1 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
13909500 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
66 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
**
13909565 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCTGAAACTTCATAGACGTGATCCTTTTA
131 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTTTA
* * *
13909630 TTTTTCTTGGCATTCACAAAAAAAATTTAGCTAAAACCTTGAAG
196 TTTTTCTTGGCATGCACAAAAAAAATTCAGCTAAAACCTCGAAG
13909674 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
1 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
13909739 CGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTT
66 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
* *
13909804 CGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTCGTAGACGTGATCCTTTTA
131 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTTTA
13909869 TTTTTCTTGGCATGCACAAAAAAAATTCAGCTAAAACCTCGAAG
196 TTTTTCTTGGCATGCACAAAAAAAATTCAGCTAAAACCTCGAAG
13909913 TAT
1 TAT
13909916 ACAAGATTTT
Statistics
Matches: 233, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
239 233 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (239 bp):
TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTTTA
TTTTTCTTGGCATGCACAAAAAAAATTCAGCTAAAACCTCGAAG
Found at i:13911150 original size:26 final size:26
Alignment explanation
Indices: 13911121--13911170 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13911111 CCGGTCCAAT
13911121 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
13911147 CTTAGACTTGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13911171 TGCCTAAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:13911338 original size:26 final size:25
Alignment explanation
Indices: 13911309--13911384 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 25
13911299 GTTCGATCAT
*
13911309 AGACTGGCAATTAACTCCGTATGCTA
1 AGACTGG-AATGAACTCCGTATGCTA
*
13911335 AGACTGGGAATGAACTCCTTATGCTA
1 AGACT-GGAATGAACTCCGTATGCTA
13911361 AGA-TAAGGAATGAACTCCGTATGC
1 AGACT--GGAATGAACTCCGTATGC
13911385 CTATGTCAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.02
26 41 0.93
27 2 0.05
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (25 bp):
AGACTGGAATGAACTCCGTATGCTA
Found at i:13911489 original size:211 final size:212
Alignment explanation
Indices: 13911124--13911548 Score: 527
Period size: 211 Copynumber: 2.0 Consensus size: 212
13911114 GTCCAATCTT
* *
13911124 AGACTGGGAATGAACTCCGTAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAATCAACCCATG
1 AGACTGGGAATGAACTCCGTAAGCTAAGACTAGGAATGAACTCCGTATGCCTAAATCAACCCATG
* * ** *
13911189 AAACGAGCATGTGGGCACTCAGTCGGCCAGAAGGATGGGATGCACAAGCCGGGGATCGGCCGGGT
66 AAACGAGCATGCGGGCACTCAGCCGGCCAGAAGGACAGGATGCACAAGCCGGGGATCGGCCAGGT
* *
13911254 CCCCCTTTGCATGCTGTCGATCCTGCTGCCACAACCCTCAG-TCCGGTTCGATCATAGACTGGCA
131 CCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTC-GTTCCGGTCCGATCATAGACTGGCA
* *
13911318 ATTAACTCCGTATG-CTA
195 ATGAACTCCATATGCCTA
* * **
13911335 AGACTGGGAATGAACTCCTTATGCTAAGA-TAAGGAATGAACTCCGTATGCCTATGTCAACCCAT
1 AGACTGGGAATGAACTCCGTAAGCTAAGACT-AGGAATGAACTCCGTATGCCTAAATCAACCCAT
* ** * * * ** * *
13911399 GAAATGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGAG-TAG
65 GAAACGAGCATGCGGGCACTCAGCCGGCCAGAAGGACAGGATGCACAAGCCGGGGATCG-GCCAG
* *
13911463 GTCCCCCTCTGCATGCTG-CAGATCCTGCTGCCGCAACCCTCGTTCTGGTCCGATCATAGACTGG
129 GTCCCCCTCTGCATGCTGTC-GATCCTGCTGCCACAACCCTCGTTCCGGTCCGATCATAGACTGG
*
13911527 GAATGAACTCCATATGCCTA
193 CAATGAACTCCATATGCCTA
13911547 AG
1 AG
13911549 CCAACCAACG
Statistics
Matches: 181, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
210 3 0.02
211 172 0.95
212 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (212 bp):
AGACTGGGAATGAACTCCGTAAGCTAAGACTAGGAATGAACTCCGTATGCCTAAATCAACCCATG
AAACGAGCATGCGGGCACTCAGCCGGCCAGAAGGACAGGATGCACAAGCCGGGGATCGGCCAGGT
CCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGTTCCGGTCCGATCATAGACTGGCAA
TGAACTCCATATGCCTA
Found at i:13913990 original size:26 final size:26
Alignment explanation
Indices: 13913952--13914003 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13913942 TGACCCGATT
** *
13913952 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTACGAATGAACTCCGGATGC
13913978 TTAGACTACGAATGAACTCCGGATGC
1 TTAGACTACGAATGAACTCCGGATGC
13914004 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTACGAATGAACTCCGGATGC
Found at i:13914303 original size:896 final size:889
Alignment explanation
Indices: 13912198--13915134 Score: 3045
Period size: 896 Copynumber: 3.3 Consensus size: 889
13912188 CTTAGATTGG
* * * * * **
13912198 GAATGAACTCCGTATGCCTAAGTCAACCAACGAAACTAGCGTGCGGGCGCTCAGCCAGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCGGTTAGAGG
* * * * * * *
13912263 GGC-AGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCGCGTTGTCGATCCTACTACCGC
66 GGCGA-GAT-CGCAAGCCGGGGATCGATCGAGTCCCCCTCTACG-GCTGTCGATCTTGCTACCG-
* * * * *
13912327 AACCCTTGGTCCGGTTTGATCTTACACTTGAAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
127 AACCCTTGGTCCGGTCTGATCTTAGAATTGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA
* * * *
13912392 TGAGCGAGCGGGTGGGCAGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGTG
191 --A-CGAGC----GGGCGGGCGGGC--GC-GACGGGCACTACGCAG-CCAGAGAGACGGGATGCG
* * *
13912457 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGACAATG
245 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
** * *
13912522 CTGTTTTTTTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAA
310 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
13912587 GACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGATTC-AGGATTTTTTAAAATT
375 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATT
* * * * ** *
13912651 TTTTGGAAAGGCGTTTTGGCCCTAAATTTGGTAGACGTGATCCTTGTATTTTTGTCGATACGCAC
439 TTTT-G--A-G-G---TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
*
13912716 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCA
496 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
13912781 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
561 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-
*
13912845 GTGAGTTCTTGAGGTTT-ATGA-GGATA-GGGGCAATATAAGGGCCAAGTACAGCA-CCATTGCA
625 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCAATATAAGGGCCAAGTACAGCACCCATCGCA
* * * *
13912906 CAATCAT-T-CGAGGA-ACA-CCCCTCGACCCCCT-GATCACCTGG-GCCCC-ATG--C--TC-G
690 C-ATCATGTGCGA--ACACACCCCCCCGGCCCCCTCGATCATC-GGAACCCCAATGCCCGGTCAG
* *
13912959 G---T-C-CG-TTCTCCG-CGATGGTGCCTCGA-GAAG-AAAATGCGCACCAGCACATGCTCGAG
751 GTTCTCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCACCAGCACATGCTCGAG
* * * * *
13913015 CCCA-CATTGTGGGTTCCGTAACCCTTGGTCCGGTCTGATGTT-GAGTGGGAATGAACTCCGTAT
816 CCCAGCA-TGT-GCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
13913078 GCTTAGGGCCT
879 GCTTAGGACCT
* * * ** ** * *
13913089 GTATATGAA-TCTGTATGCC-AAGT-AAACCATGAACATTGAGC-TAGC--AAGC-TAG-AGATT
1 G-A-ATGAACTCCGTATGCCTAAGTCAACCCA-CAA-AACGAGCGT-GCGGGCGCTTAGCCGGTT
* * * * *
13913146 -GCCAGAGGGCGGGATC-CAAGCCGGGGAAATCGATC-AGGTCCCCTTCTGCACGCCTATCGGAC
61 AG--AG-GGGCGAGATCGCAAGCCGGGG--ATCGATCGA-GTCCCCCTCT--ACGGCTGTC-GAT
** * * * *
13913208 CTACTGCTA-C-AACTCTCCCGTTCCACGTCTGATCTT-GACATAGG-ATGAACTCCGTATGGCT
117 CT--TGCTACCGAAC-C-CTTGGTCC-GGTCTGATCTTAGA-ATTGGAATGAACTCCGTATGCCT
* * * *
13913269 AAGCCAACCGATGAAACGAGCGGGCGGGTGGGCGGGA-GGGCACTACGCCGGCCAGAGAGACGGG
176 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGACGGGCACTACG-CAGCCAGAGAGACGGG
* *
13913333 ATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
240 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
* * * *
13913398 CACTGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAACCTTCACGTGAAGTATCAT
305 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
** *
13913463 GGCAAGTTGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
370 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
*
13913528 AATTTTTT-AGG-GGCCCCAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
435 AATTTTTTGAGGTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
13913591 AAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCATTTC
500 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
13913656 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
565 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
13913721 TTCTCAAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTAGCAGCACCCATCGCACAT
630 TTCTTGAGGTTTGATGAGGGATAGGGGGC-AATATAAGGGCCAAGTA-CAGCACCCATCGCACAT
*
13913786 CATGTGCGAACACACCCCCCCGGCCCCCTCGACCATCGGAACCCCAATGCCACCGGTCAGGTTCT
693 CATGTGCGAACACACCCCCCCGGCCCCCTCGATCATCGGAACCCCAATG-C-CCGGTCAGGTTCT
*
13913851 CCGGCGATGCTCCGACGATGGTCCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCC
756 CC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCTCGAGCCC
* * ** *
13913916 AGCATGTGCTGCCGCAA-CCTTCGGTCTGACCCGATTTTAGACTGGGAATGAACTCCGTATGCTT
819 AGCATGTGCTGCCGTAACCCTT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
13913980 A-GA-CT
883 AGGACCT
*
13913985 ACGAATGAACTCCGGATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCGGTTAGA
1 --GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCGGTTAGA
*
13914050 GGGGCGAGATACGCAAGCCGGGGATCAATCGAGTCCCCCTCTACGTGCTGTCGATCTTGCTACCG
64 GGGGCGAGAT-CGCAAGCCGGGGATCGATCGAGTCCCCCTCTACG-GCTGTCGATCTTGCTACCG
** * *
13914115 TAACCCTTGGTCCGGTCCAATCTTAGATTTGGAATGAATTCCGTATGCCTAAGCCAACCGACGAA
127 -AACCCTTGGTCCGGTCTGATCTTAGAATTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
13914180 ACGAACGGGCGGGCGGGC-CGACGGACGCTACGTCAGCCAGACAGACGGGATGCGCAAGCCGTGG
191 ACGAGCGGGCGGGCGGGCGCGACGGGCACTACG-CAGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
13914244 ATCTATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
255 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
*
13914309 GACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
320 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
13914374 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
385 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT--G-A-G
* * *
13914439 AGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAGTCA
446 -G---TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
** *
13914504 ATTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACT
507 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
13914569 TTAATTGCTACTGGCAGCAACCCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTTGA
572 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
*
13914634 GCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
637 GGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGC
* * *
13914699 G--CACACCTCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
700 GAACACACC-CCCCCGGCCCCCTCGATCATCGGAACCCCAATGCC--CGGTCAGGTTCTCCG-CG
*
13914762 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG-TCTGAGCCCAGCAT
761 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-CGCACCAGCACATGCTC-GAGCCCAGCAT
* *
13914826 GTGTTGCCGTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATG-A------A--C-T----CC
824 GTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGACC
13914877 -
889 T
** * **
13914877 G--T--A---C----GCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCGGTTAGAGG
* * * * * * * * * *
13914931 GGCTG-TATACACAAGCTGAGGATCGGTC-AGGTCCCCCTCTGCGCGCTATCGATCCTACTGCCG
66 GGC-GAGAT-CGCAAGCCGGGGATCGATCGA-GTCCCCCTCTACG-GCTGTCGATCTTGCTACCG
* * * * *
13914994 TAACCCTCGGTCCGGTCTGATCTTACACTTGGAATGAACTCCATATGCCTAAGCCAACTGACGAA
127 -AACCCTTGGTCCGGTCTGATCTTAGAATTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * * * * * *
13915059 ACGAGCATGCGGGCGGGCG-GGCGAGCACTACGTCTGCCTGAGAGACAGGATGCACAAGCCGTGG
191 ACGAGCGGGCGGGCGGGCGCGACGGGCACTACG-CAGCCAGAGAGACGGGATGCGCAAGCCGTGG
13915123 ATCGATAGGGTG
255 ATCGATAGGGTG
13915135 TGTGGGCGCT
Statistics
Matches: 1728, Mismatches: 217, Indels: 214
0.80 0.10 0.10
Matches are distributed among these distances:
871 173 0.10
872 9 0.01
873 5 0.00
874 5 0.00
875 18 0.01
876 12 0.01
877 13 0.01
878 18 0.01
879 220 0.13
880 4 0.00
881 204 0.12
882 4 0.00
883 2 0.00
884 1 0.00
885 10 0.01
886 3 0.00
887 3 0.00
888 11 0.01
889 10 0.01
890 30 0.02
891 14 0.01
892 24 0.01
893 42 0.02
894 21 0.01
895 31 0.02
896 279 0.16
897 50 0.03
898 67 0.04
899 32 0.02
900 8 0.00
901 14 0.01
902 2 0.00
903 1 0.00
904 11 0.01
905 136 0.08
906 240 0.14
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (889 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCGGTTAGAGG
GGCGAGATCGCAAGCCGGGGATCGATCGAGTCCCCCTCTACGGCTGTCGATCTTGCTACCGAACC
CTTGGTCCGGTCTGATCTTAGAATTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CGGGCGGGCGGGCGCGACGGGCACTACGCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGAGGTGGCCCCAA
ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
TAGGGGGCAATATAAGGGCCAAGTACAGCACCCATCGCACATCATGTGCGAACACACCCCCCCGG
CCCCCTCGATCATCGGAACCCCAATGCCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCC
CGACGAAGAAAAATGCGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCC
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGACCT
Found at i:13915307 original size:228 final size:230
Alignment explanation
Indices: 13914910--13915370 Score: 764
Period size: 228 Copynumber: 2.0 Consensus size: 230
13914900 ACGAGCGTGC
*
13914910 GGGCGCTCAGCCGGCCAGAGGGGCTGTATACACAAGCTGAGGATCGGTCAGGTCCCCCTCTGCGC
1 GGGCGCTCAGCCGGCCAGAGGGGCGGTATACACAAGCTGAGGATCGGTCAGGTCCCCCTCTGCGC
*
13914975 GCTATCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTACACTTGGAATGAACTCCATAT
66 GCTATCAATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTACACTTGGAATGAACTCCATAT
13915040 GCCTAAGCCAACTGACGAAACGAGCAT-GCGGGCGGGC-GGGCGAGCACTACGTCTGCCTGAGAG
131 GCCTAAGCCAACTGACGAAACGAGCATGGCGGGCGGGCGGGGCGAGCACTACGTCTGCCTGAGAG
13915103 ACAGGATGCACAAGCCGTGGATCGATAGGGTGTGT
196 ACAGGATGCACAAGCCGTGGATCGATAGGGTGTGT
* * *
13915138 GGGCGCTCAGCCGGCCAGAGGGGCGGTATGCACAAGCTGAGGATCGGTCGGGTCCCCCTCTGCGT
1 GGGCGCTCAGCCGGCCAGAGGGGCGGTATACACAAGCTGAGGATCGGTCAGGTCCCCCTCTGCGC
* *
13915203 GCTGTCAATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTACACTTGGAATGAACTCCGTAT
66 GCTATCAATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTACACTTGGAATGAACTCCATAT
*
13915268 GCCTAAGCCAACTGACGGAACGAGCATGCGGGCGGGCGGGCGGGGGGGCGAGCACTACGTCTGCC
131 GCCTAAGCCAACTGACGAAACGAGCAT---GGCGGGCGGGC---GGGGCGAGCACTACGTCTGCC
* *
13915333 TGAGAGACGGGATGTACAAGCCGTGGATCGATAGGGTG
190 TGAGAGACAGGATGCACAAGCCGTGGATCGATAGGGTG
13915371 GTAGGTGGGT
Statistics
Matches: 215, Mismatches: 10, Indels: 8
0.92 0.04 0.03
Matches are distributed among these distances:
228 149 0.69
232 10 0.05
236 56 0.26
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.18
Consensus pattern (230 bp):
GGGCGCTCAGCCGGCCAGAGGGGCGGTATACACAAGCTGAGGATCGGTCAGGTCCCCCTCTGCGC
GCTATCAATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTACACTTGGAATGAACTCCATAT
GCCTAAGCCAACTGACGAAACGAGCATGGCGGGCGGGCGGGGCGAGCACTACGTCTGCCTGAGAG
ACAGGATGCACAAGCCGTGGATCGATAGGGTGTGT
Found at i:13919486 original size:883 final size:877
Alignment explanation
Indices: 13915137--13924807 Score: 10836
Period size: 897 Copynumber: 10.8 Consensus size: 877
13915127 ATAGGGTGTG
* *
13915137 TGGGCGCTCAGCCGGCCAGAGGGGCGGTATGCACAAGCTGAGGATCGGTCGGGTCCCCCTCTGCG
1 TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTGCG
* * * *
13915202 TGCTGTCAATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTACACTTGGAATGAACTCCGTA
66 TGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTA
* * *
13915267 TGCCTAAGCCAACTGACGGAACGAGCATGCGGGCGGGCGGGCGGGGGGGCGAGCACTACGTCTGC
131 TGCCTAAGCCAACTGAC-GAAAGAG-A-GCGGGCGGGCGGGC----GGGCGGGCACTACG-CGGC
* **
13915332 CTGAGAGACGGGATGTACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
188 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
13915397 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
253 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* **
13915462 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTCGAAACGTTTTGTGGTT
318 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTCG-AACATTTTACGGTT
* * *
13915526 CAAGATTTTTTAAAATTCTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
381 CGAGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
13915591 TTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATT
446 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
13915656 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAA
511 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
13915721 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAT
576 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
13915786 GTACCAGCACCCATCGCACATCATGTCCACACACCACCCCCGGCCCCCCCGATCGTCAGAACCCC
641 GTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * * *
13915851 AATGCCGCCAGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGAC
705 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * * *
13915916 ACCAGCACATACCCGAGCCCAACATGTGCTGCCGTAACCCTCGATCTGATCCGATCTTAGACTCG
770 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACT-G
*
13915981 GAATGAACTCCGTATGCGTAGATCAGGAATCAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
834 G---G-A------AT--G-A-A-C-----T---C-C-GTATGCCTAAGTCAACCCATGAAACGAG
13916046 C--A
874 CGTA
* ** * ** * * * *
13916048 TGCGGCCGCTCAACCGGCTTGAGGGGCGCGATGTGCAAGCTGGGGATTGACCGGGTCCCCCTCTA
1 TG-GG-CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTG
* ** * ** * *
13916113 CGTGCTGTCAAAGCTGCTGCCAAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
64 CGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCG
* * * *
13916178 TATGCCTAAGCCAACCGACGAAA-TGA--------GCGGGCGAGCGGGCACTATGCCGGCCAGAG
129 TATGCCTAAGCCAACTGACGAAAGAGAGCGGGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGAG
* *
13916234 AGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTC
193 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
13916299 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAA
258 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
13916364 GTTTCATGGCAAGACGACTCGTTTTCTATTCTTCACGATTTTTGAA-ACTTTTCTCGGTTCGAGA
323 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAACA-TTTT-ACGGTTCGAGA
* * * ** * * *
13916428 TTTTTTGAAAATTTTTTCAGAAAGAGTTTTGGTGCCAAACCTGGTAGATGTGATCCTCGTATTTT
386 TTTTTT-AAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
**
13916493 TTTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
450 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
13916558 AAAAGTTTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGAT
515 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
13916623 CTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
580 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
13916688 CAGCACCAATCGCACATCATGTGCGCACACCTCCCCTGG-CCCCCCGATCACCGGAACCCCAATG
645 CAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * *
13916752 TCGCCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
709 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
** * * * *
13916817 GCACATGTTCGAGCCCAGCATGTGTTGCCGTAACCCTCGGTCTGATCAAATCTTAGACTGGGAAT
774 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
* *
13916882 GAACTCCGTATGCC-AAGTCGACCCATGAAACGAGCGTG
839 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
* * * *
13916920 CGGGCGCTCAGCCGGCCAGAGGGGCTGTATGCACAAGCTGAGGATCGGTCGGGTCCCCCTCTGCG
1 TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTGCG
** * * * *
13916985 CACTGTCGATCCTACTACCGCAACCCTTGGTCTGGTCTGATCTTACACTTGGAATGAACTCCATA
66 TGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTA
* * * * *
13917050 TGCCTAATCCAACTGATGAAACGAGCAAGCAGGCGAGCGGGCGGGCGGGCACTACGTCGGCCTGA
131 TGCCTAAGCCAACTGACGAAA-GAG--AGCGGGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGA
* *
13917115 GAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
192 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * *
13917180 CTACGTGCCAATGCCAGTTTTATGGCTTGTACATTCATACAATGGTCTCTTAAGCCTTCACGTGA
257 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
13917245 AGTTTGATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTCGAAACGTTTTGCGGTTCGAG
322 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTCG-AACATTTTACGGTTCGAG
13917309 ATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
385 ATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
13917374 TGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAA
450 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
13917439 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTGAAATGCT
515 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
13917504 CTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTAC
580 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * **
13917569 CAGCACCCATCGCACATCATGTGCACACACCACCCCCAGCCCCCCCGATCGCTAGAACCCCAATG
645 CAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * * * * * * *
13917634 CCGCCAGTCAGGTTCTTCGACGATCCTCCGATGATGGTGCCCCGATGAAGGAAAATGTGGAACCA
709 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * * * *
13917699 GCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTACACTCGGAAT
774 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
* * *
13917764 GAACTCCGTATGCATAGATCAAGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
839 GAACTCCGTATGC----CT-AAG--TCAAC-CC--A----T--G--AA---ACG--A-GCGTA
* * ** * ** *
13917827 TGCGGCCACTCAACCGGCTTGAGGGGCGCGATGTGCAAGCT-AGGGATCGACCGGGTCCCCCTCT
1 TG-GG-CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGA-GGATCGGCCGGGTCCCCCTCT
* * ** * * * *
13917891 ACGTGCTGTCAAAGCTGCTGCCACAACCCTCGGTCTGGCCTGATCTTAGACTGGGAATGAACTCC
63 GCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCC
* * * * *
13917956 GTATGCCTAAGCCAAC---C-AATGA-AACGAGCGGTCGGGCGGGCGGGCACTATGCCGGCCAGA
128 GTATGCCTAAGCCAACTGACGAAAGAGAGCGGGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGA
13918016 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
192 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
13918081 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTTCATGTGA
257 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * *
13918145 AGTTTCATGGCAAGACGACTCGTTTTCTATTCTTCACGATTTTTGAAACTTTTTTCGGTTCGAGA
322 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG-AACATTTTACGGTTCGAGA
* * * ** * * **
13918210 TTTTTTAAAATTTTTTCAGAAAGAGTTTTGGTGCCAAACCTGGTAGATGTGATCCTCATATTTTT
386 TTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
**
13918275 TTTGGTGTGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
451 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* ** *
13918339 AAAGTGTCCCCATTTCAAACACTTTAATTACTACTGGCAGCAAACCTGTAAAATCTCAAATGATC
516 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
13918404 TTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCC
581 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* ** * *
13918469 AGCACCCATCGCACATAATGTGCGCACACCTCCCTTGGACCCCCCGATCGTCGGAACCCCAATGC
646 AGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * *
13918534 CGCCGGTCAGGTTCTCCAGCGATACTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACTAG
710 CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * *
13918599 CACATGTCCGAGCCCAACATGTGTTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATG
775 CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATG
13918664 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
840 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
* * *
13918702 TGGGCGCTCAACCGGCCAGAGGGGAGGTATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTGCG
1 TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTGCG
* * * * *
13918767 CGCTGTCGATCCTACTGCCGTAACACTCGGTCCGGTCTGATCTT-GCACTTGGAATGAACTCTGT
66 TGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAG-ACTTGGAATGAACTCCGT
* * *
13918831 ATGCCTAAGACAACTGACGAAATGAGTAGACGGGCGGGCGGGCGGGCGGGCACTGCGTCGGCCTG
130 ATGCCTAAGCCAACTGACGAAA-GAG-AG-CGGGCGGGCGGGCGGGCGGGCACTACG-CGGCCAG
* *
13918896 AGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATT
191 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * *
13918961 TTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTG
256 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * *
13919026 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTATTATTTTCAGAACATTTTACAGTTCGGG
321 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC-GAACATTTTACGGTTCGAG
13919091 ATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
385 ATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * *
13919156 TGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGAATTTGTGACCATTTGAA
450 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
13919221 AAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
515 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
13919286 CTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTAC
580 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* *
13919351 CAGCACCCATCGCACATCATGTGCACACACCACCCCCGGCCCCCCCGATCGCCAGAACCCCAATG
645 CAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * *
13919416 CCGCCAGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCAGCACCA
709 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * * *
13919481 GCACATGCCCGAGCCCAGTATGTGCTACCGTAACCCTCGGTCTGATCCGATCTTAGACTCGGAAT
774 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
* * *
13919546 GAACTCCGTATGCGTAGATCGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
839 GAACTCCGTATGCCTA-A----G--TCAAC-CC--A----T--G--AA---ACG--A-GCGTA
* ** * * * ** *
13919609 TGCGGCTGCTCAACCGGCTTGAGGGCCGCGATGCGCAAGCTG-GAGATCAACCGGGTCCCCGTCT
1 TG-GGC-GCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAG-GATCGGCCGGGTCCCCCTCT
* * ** * *
13919673 ACGTGCTGTCAAAGCTGCTGCCACAACCCTCGGTCTGGT-TCGATCTTAGA-TTGGGAATGAACT
63 GCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTT-GGAATGAACT
* * * * *
13919736 CCGTATGCCTAAGCCAAC---CG-ATGA-AACGAGCGGGTGGGCGGGCGGGCACTATGCCGGCCA
126 CCGTATGCCTAAGCCAACTGACGAAAGAGAGCGGGCGGGCGGGCGGGCGGGCACTACG-CGGCCA
* *
13919796 GAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATAT
190 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
13919861 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACAT
255 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * ** * **
13919926 GAAGTTTCATGGCAAGACGACTCATTTTCTATTCTTCACAATTTTTC-AAAATTTTTTTGGTTCG
320 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCGAACA-TTTTACGGTTCG
* * * * * ** * * *
13919990 AGATTTTTTTAAATTTTTTCAGAAAGATTTTTGGTGCCAAACCTGGTAGATGTGATCCTCGTATT
383 AGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
13920055 TTGTTTTGTG--TGCAACAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCA
448 TT-TTTTG-GCATGC-AC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
13920118 TTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCA
509 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
13920183 AATGATCTTTAAGAGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
574 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
13920248 AAGTACCAGCACCTATCGCACATCATGTGCACACACCTCCCCTGGCCCCCCCGATCGCCGGAACC
639 AAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCCGGAACC
* * * * * *
13920313 CCAATGCTGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCTGACAAATAAAAATACG
703 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * *
13920378 GCACCAGCACATGTCCGAGCCCAGCATGTGTTGTCGTAACCCTCAGTTCGGTCCAATCTTAGACT
768 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACT
* * * *
13920443 GGGAATGAATTTCGTATGCCAAAGTCAACCCATGAAACGAGCGTG
833 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
* * * *
13920488 TGGGCGCTCAGCCGGCCAGAGGGGCGGTATGCACAAGTTGAGGATCGGCTGGGTCCTCCTCTGCG
1 TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTGCG
** * * * * *
13920553 CACTGTCGATCCTACTGCCACAACCCTCGATCCGGTCTAATCTTACACTTGGAATGAACTCCGTA
66 TGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTA
* * * * *
13920618 TGCCTAAGCCAACTGATGAAACGAGCAGGCGGGTGGACAGGCGGGCGGGCACTACGTCGGCCTGA
131 TGCCTAAGCCAACTGACGAAA-GAG-A-GCGGGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGA
* *
13920683 AAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
192 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * *
13920748 CTGCGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGA
257 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
13920813 AGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCATTATTTTCGAAACGTTTTACGGTTCGAGA
322 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG-AACATTTTACGGTTCGAGA
13920878 TTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
386 TTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
13920943 TTTGGCATGCACAAAATAATTCAGCTAAAAACTCAAAGTGTACAAGAATTTGTGACCATTTGAAA
451 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
13921008 AAAGTGTCTCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTT
516 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
13921073 TTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGAGATAGGGGGCGAATATAAGGGCCAAGTACC
581 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
13921138 AGCACCCATCGCACATCATGTGCGCACATGCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGC
646 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * * * * *
13921203 CGCCAGTCAGATTCTCCAGTGATGCTCCAACGATCGTGCCCCGACGAAGAAAAATACGGCACCAG
710 CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * *
13921268 CACATGCCCGAGCCCAACATGTGCTGCCGCAACCATCGGTCCGGTTCAATCTTAGACTGGGAATG
775 CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG-----TC-----C--------
* *
13921333 AACTCTGTTTGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTA
822 AA-------T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
* * * * * **
13921397 CGGGCGCTTAGCCAGCC-GAGGGGCGGGATGCACAAGCCGGGGATCGGTTGGGTCCCCCTCAT-C
1 TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTC-TGC
* ** * * * *
13921460 ATGCTACCGATCTTGCTGCCGCAACCCTCGGT-TCAGTCTGATCTTAGACTGGGAATGAACTCCG
65 GTGCTGTCGATCCTACTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTTGGAATGAACTCCG
* * * *
13921524 TATGCCTAAGCCAACTGACGAAACA-A--------ACGGGCGGGTGGGCACTATGCCGGCCAGAG
129 TATGCCTAAGCCAACTGACGAAAGAGAGCGGGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGAG
* * * * *
13921580 AGACGAGATGCACAAGCCGCGGATCGCTTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
193 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
13921645 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAA
258 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
13921710 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA-AGCTTTTGCAGTTCGGGA
323 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAACA--TTTTACGGTTCGAGA
* * *
13921774 TTTTTTCAAAATTCTTTTGGAAGAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTT
386 TTTTTT-AAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *** *
13921839 TTTTGGCTTGTACAAAAAAAAAAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAA
450 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * *
13921904 AAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCTAACCTATAAAATCAT-GAATGC
515 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGC
**
13921968 TCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
579 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * **
13922033 CCAGCAGCCTTCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATTACCGGAACCCCAATG
644 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * * * *
13922098 CCGCCGGTCAGGTTCTCCAGTGATGCTCCGATGATGGTACCCCGACGAAGAAAAATGTGGCACTA
709 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* ** * * * *
13922163 GCACATGCCTGAGCGTAGCATGGGCTACTGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAAT
774 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC-C---TC-G---G-TC-----C---G---
* * * * * *
13922228 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCGACCCATAAAACGAGCATG
818 G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
* * * * * * *
13922293 CGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCG-GCGATCAGCCGGGTCCCCCTCTCC
1 TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAG-GATCGGCCGGGTCCCCCTCTGC
** * * * * * *
13922357 GTGCTACCGATCCTACTACTGCAACCTTCAGTCTGGTCTGATCTTAGA-TTAGGAATAAACTTCG
65 GTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTT-GGAATGAACTCCG
* * * * * *
13922421 TATGCCTAAGCCAACCGAC--AA-A-A-----CGAGCAGGCGGGCAGGCACTATGGCGACCAGAG
129 TATGCCTAAGCCAACTGACGAAAGAGAGCGGGCGGGCGGGCGGGCGGGCACTA-CGCGGCCAGAG
* * * * * *
13922477 AAAAGGGTTGCGCAAGCCGTGGATCAATAGTGTTGTAGGTGGGTTTAGGCACATCTTCATATTTC
193 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
13922542 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGAGAA
258 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
13922607 GTTTTATGGCAAGACGACTCGTATTT-TATTTTTCATGATTTT-GAAAACCTTTTACGGTTCTGA
323 GTTTCATGGCAAGACGACTCGT-TTTCTATTTTTCATGATTTTCG--AACATTTTACGGTTC-GA
* * * * *
13922670 -ATTTTTTTAAAATTTTTTCGGTAGGAGTTTTAGCCCTAAACTTGGTAGACGTGATCCTTCTATT
384 GA-TTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
13922734 TTTTTTGGCTTGTACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
448 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
13922799 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCAT-GAAC
513 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAAT
* ***
13922863 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAATTTCCAAG
577 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * ** *
13922928 TACCAACACCCTTCGCATATCATGTCCGCACACCCCCCCGACCCTGCCGATCGCCGAAACCCCAA
642 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
* * ** ** * * *
13922993 TGCCGCCGATTAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAAAGCGACGC
707 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* *
13923058 CAGCACATGACCGAGCCCAGCATGTGCTGCTGTAACCCTTGGTTCGGTCTAATCTTAGACTGGGA
772 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC-----TCGG-----TC-----C---G-
* * * * *
13923123 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCTACGAAATGAGCG
818 --G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
13923188 TA
876 TA
* * * * * * * *
13923190 CGGGCACTCAGCCGGCCAGAGCGGCGGGATGCGCAAGCCGAGGATCGGCCGAGTTCCCCTCTACG
1 TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTGCG
* * ** *
13923255 TGCTGTCGATCCTACTGCTGCAACCCTCAGTCTGGTCCAATCTTCA-AC-TGCGAATGAACTTCG
66 TGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTT-AGACTTG-GAATGAACTCCG
* * * *
13923318 TATGCCTAAGCCAACCGATGAAA-CGAGCAGGCGGGCGGGCGGGCGGGCACTACGCAGGCCAGAG
129 TATGCCTAAGCCAACTGACGAAAGAGAGCGGGCGGGCGGGCGGGCGGGCACTACGC-GGCCAGAG
*
13923382 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTC
193 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
13923447 TACATGCCAGTGCCGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAA
258 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * * *
13923512 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAACCTTTTTGCAGTTGGGGAT
323 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA-CATTTTACGGTTCGAGAT
*
13923577 TTTTTAAAACTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
387 TTTTTAAAA-TTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
** * * * *
13923641 GCTGGCATTCACAAAAATATTCAGCTAAATACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
451 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
13923706 AAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAGTGCTC
516 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * **
13923771 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATAAAAGCACCAAGTACC
581 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
** * * * *
13923836 AGCATACATCACACATCATGTGCGTACA-CCCCCTGGCCCCCCCGATCACCGGAACCCCAATGCC
646 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
** * * * * *
13923900 ATCGGTTAGGTTCTCCGGTGATGGTCCGACGATGGTGCCCCGACGAACAAAAATGCGACACCAGC
711 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * *
13923965 ACAAGCACAAGCCTGAACCCAGCATGTGCTGTCGCAACCCTCGGTCCCGTCCAATCTTAGGCTGG
776 ACATG--C---CC-GAGCCCAGCATGTGCTGCCGTAACCCTC-G----G-----TC-----C--G
* * * *
13924030 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTACGTCAACCCACGAAACGAC
818 G--T---C--C-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
*
13924095 CGTG
874 CGTA
* * ** * ** * *
13924099 CGGGCGTTCAGGAGGCCAGAGGGGCGGGATG-AGTAAGCCAAGGATCGGTCGGGTCCCCCTTTGC
1 TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCA-CAAGCTGAGGATCGGCCGGGTCCCCCTCTGC
** * * * * *
13924163 GTGCTACCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGA-TTGGGAATTAACTCCG
65 GTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTT-GGAATGAACTCCG
* * * * *
13924227 TATGCCTAAGCCAACCGACGAAA-CGAGCGGGCGGGCGGACGGGCGGGCAGTACGCCGACCAGAG
129 TATGCCTAAGCCAACTGACGAAAGAGAGCGGGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGAG
* *
13924291 AGACGGGATGCGCGAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
193 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *** * * * * *
13924356 TGCATTTTAATTCCATTCTTATTGCTTGCAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAA
258 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
13924421 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGAT
323 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC-GAACATTTTACGGTTCGAGAT
* * * ** * *
13924486 TTTTGAAAATTTTTTCAGAAGGAGTTTTCTCCCCAAACTTGGTATACGTGATCCTTGCATTTTTT
387 TTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
* *
13924551 TTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGA-CATTTGAAAA
452 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
13924615 AAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCT
517 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* ** *
13924680 TTAAGGGGGTGTGAGTTCTCAAGGTTTGACAAGGGATAGGGGGCCAATATAAGGGCCAAATACCA
582 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
13924745 GCACCCATCGCACATCATGTGCGCACACCCCTCCC-G-ACCCCCTATCACCGGAACCCCAATGCC
647 GCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
13924808 CGAGCCTAGC
Statistics
Matches: 7502, Mismatches: 1022, Indels: 475
0.83 0.11 0.05
Matches are distributed among these distances:
870 136 0.02
871 9 0.00
872 4 0.00
873 113 0.02
874 4 0.00
875 5 0.00
876 3 0.00
877 109 0.01
878 12 0.00
879 4 0.00
880 3 0.00
881 413 0.06
882 478 0.06
883 680 0.09
884 16 0.00
885 255 0.03
886 4 0.00
887 1 0.00
888 6 0.00
889 2 0.00
890 9 0.00
891 6 0.00
892 6 0.00
893 6 0.00
894 5 0.00
895 8 0.00
896 401 0.05
897 1436 0.19
898 284 0.04
899 352 0.05
900 135 0.02
901 410 0.05
902 14 0.00
903 442 0.06
904 272 0.04
905 198 0.03
906 7 0.00
907 10 0.00
908 302 0.04
909 798 0.11
910 9 0.00
911 4 0.00
912 5 0.00
913 121 0.02
914 1 0.00
915 3 0.00
917 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (877 bp):
TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTGCG
TGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTA
TGCCTAAGCCAACTGACGAAAGAGAGCGGGCGGGCGGGCGGGCGGGCACTACGCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAACATTTTACGGTTCGAGATTTTT
TAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCATGAAACGAGCGTA
Found at i:13922243 original size:26 final size:26
Alignment explanation
Indices: 13922214--13922266 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13922204 TCGGTCCGAT
13922214 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13922240 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13922266 C
1 C
13922267 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13923147 original size:26 final size:26
Alignment explanation
Indices: 13923111--13923163 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13923101 TCGGTCTAAT
13923111 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13923137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13923163 C
1 C
13923164 CTAAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13924056 original size:26 final size:26
Alignment explanation
Indices: 13924020--13924072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13924010 CCCGTCCAAT
* *
13924020 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13924046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13924072 C
1 C
13924073 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13925637 original size:11 final size:11
Alignment explanation
Indices: 13925621--13925653 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
13925611 CAGTCAGGTT
13925621 CTCCGGCGATG
1 CTCCGGCGATG
13925632 CTCCGGCGATG
1 CTCCGGCGATG
13925643 CTCCGGCGATG
1 CTCCGGCGATG
13925654 GTGCCCCGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.09, C:0.36, G:0.36, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:13927945 original size:885 final size:875
Alignment explanation
Indices: 13924803--13930095 Score: 5482
Period size: 914 Copynumber: 5.9 Consensus size: 875
13924793 CGGAACCCCA
* * * * ** * *
13924803 ATGCCCGAGCCTAGCATGTGCTGTCGCATCCCTTGGTCCGG-TCTG-AT-CTTAGACTGAGAATG
1 ATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGATCCGTATGCTTAGACTGGGAATG
* * * *
13924865 AACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGA
66 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * ** * ** * *
13924930 GATACGCAAGCCGGGGATCGATCGGGTCCCTTTTTACGTGCTGTCGATCCTGCTGCTGCAACCTT
131 GATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCT-CGTGCTACCGATCCTGCTGCCGCAACCCT
* * * ** * *
13924995 TGATCCT-G-CCTGATCTTAGATTGGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACGAG
194 CGGT-CTGGTCC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAG
* * * * * *
13925058 CTGATGGGTGGGCGGGGACTATGCCGGCAACAGAGACGGGATGCGCAAGCCGTTGATCGATAGGG
257 C-GA-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
** *
13925123 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATTGCTTGTAAA
320 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
13925188 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTT
385 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** * *** * * * *
13925253 TTACAATTTTCAAAACTTTTTGTAGTTCGGGATTTTTAAAAATTTTTTTGGACGGTGTTTTGGCC
450 TCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
13925318 CCAAACTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACT
515 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
13925383 TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTA
580 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
*
13925448 CTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
645 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* * *
13925513 GGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCGCACCTCATTTGCGCACACCCCC
710 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
** * * *
13925578 CGGCCTTCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCC-GGCGAT
775 CGGCCCCCCCGATCGTCGGAACCCCAATGCCG-CA-TCA-G---T--GGC-CTTCTCCAGTCGAT
*
13925642 GCTCCGGCGATGGTGCCCCGGC-ATAGAAAAATGTCA-CACCAGCAC
831 GCTCCGGCGATGGTGCCCCGACGA-AGAAAAATG-CAGCACCAGCAC
* * * *
13925687 ATGCTTGAGCCCAGTATGTGTTGCCGCAATCCTCGGTTCGGTCCGATCTTAGACTGGGAATGACC
1 ATGCTCGAGCCCAGCATGTGCTGCCGCAA--C-C----C--TCAG-TC-----C---G---GA--
** * ** * * *
13925752 TCCGTATGCTTAGACTAAGAATAAACTCCGTATGCCTAAGTCGGCCCACGAAACGAACGTGTGAG
43 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
13925817 CACTCAGCCGACTAGAGGGACGGGATGCGTAAGCTCGGGATCGGTCGGGTCCCCCTCTGTGTGCT
108 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGATCGGTCGGGTCCCCCTCT-CGTGCT
* * * * * *
13925882 ATCGATCCTGCTACCGTAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCG
171 ACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
13925947 TAAGCCAACCAACGAAACGAACGGGCGGACGGGCGGGCGAGCACTACGCCAGCCAGAGAGACGGG
236 TAAGCCAACCGACGAAAC-AA---GC-GA-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* ** * *
13926012 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTACGTTTAGGCACATCTTCATATTTTTGCATGA
295 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * *
13926077 AAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
360 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
13926142 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
425 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAA
* ** * ** *** * *
13926207 AATTTTTTCGAAATTATTTTTGGCACCC-AACTTTTTAGTTATGATCCTTGTATTTTTGTTGGCG
490 AATTTTTTCGGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
*
13926271 TGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
554 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * * *
13926336 CTCCATTTCAAACATTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTTTTTAAGG
619 CCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
13926401 GGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCTACTACCAGCACCC
684 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
13926466 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGC--CAGT
749 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCATCAGT
* ** * *
13926529 CAGG--TTCTCC-GACGATGCTCCAACGATCGTGCCCCGACGAAGAAAAAT-AAGGCACCAGCAC
814 --GGCCTTCTCCAGTCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCA-GCACCAGCAC
* *
13926590 ATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTTCAATCTTAGACTGGGAATGAAC
1 ATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGG----ATC-----C-------G---
*
13926655 TCTATTTGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
47 --TA--TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * ** *
13926720 CGCTCAGCCAGCC-GA-AGGTGGGATGCACAAGCCGGGGATCTTTTGGGTCCCCCTCATCGTGCT
108 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTC-TCGTGCT
* * * * * *
13926783 GCCAATCTTGCTGCCGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAAAGAACTCCGTATGCC
171 ACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* ** * *
13926848 TAAGCCAACCGACGAAACGAGC--GGGCGGGTAGGCACTATGCCGACCAGAGAGACGGGATGCGC
236 TAAGCCAACCGACGAAACAAGCGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
13926911 AAGCCGTGGATCGCTTGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGC
301 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
13926976 AATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAG
366 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
13927041 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAAGC-TTTTGCAGTTCGGGATTTTTTCAAAATT
431 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAA-CTTTTTACGGTTCGGGATTTTTT-AAAATT
* ** * *
13927105 CTTTCGGAATAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCTTGCAC
494 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* * *
13927170 AAAAAAAATAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCA
559 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
13927235 TTTCAAACACTTTAATGGCTACTGGCAGCTAACCTGTAAAATCAT-GAATGCTCTTTAAGGGGGT
624 TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGT
* *
13927299 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCTTCG
688 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
13927364 CACATCATGTGCGCACACCCCCCCGGCCCCCCCCGATTGTCGGAACCCCGATTGTCGAAACATCA
753 CACATCATGTGCGCACA-CCCCCCGG-CCCCCCCGATCGTCGGAACCCC-AATGCCG---CATCA
* * * * *
13927429 TGTGCGCACATCATGCCAGTCAGGTTCTCCGGTGATGGTACCCCGACGAAGAAAAATGCAGCACC
812 -GTG-GC-CTTC-T-CCAGTC-GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACC
*
13927494 AACAC
871 AGCAC
* * * *
13927499 ATGCTCGA-CCGTAGCATGGGCTACTGCAACCCTCAGTCCGG-TCCG-AT-CTTAGACTGGGAAT
1 ATGCTCGAGCC-CAGCATGTGCTGCCGCAACCCTCAGTCCGGATCCGTATGCTTAGACTGGGAAT
* * * *
13927560 GAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAGCTGGCCAGA-GGGCT
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-
* *** * *
13927624 GGGATGCGTAAGCCGGTGATCAACCGGGTCCCCCTCTCTGTGCTACCGATCCTACTGCTGCAACC
129 GGGATGCGCAAGCCGG-GATCGGTCGGGTCCCCCTCTC-GTGCTACCGATCCTGCTGCCGCAACC
* * * *
13927689 CTCGGT-TCGGTCTGATCTTAAACTAGGAATGAACTCTGTATGCCTAAGCCAACCGAC-ATAACA
192 CTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACA
* * * * * * **
13927752 AGC-A-AGTGGGCGGGCACTATGCCGGCCAGAGAGAAGGGTTGCGTAAGCCGTGGATAAATAGGG
255 AGCGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
13927815 TTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
320 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* ** * *
13927880 TTCATACAATGCTCCCTTAAGCCTTCACAAGAAGTTTTATGGCAAGACGACTCGTATTCTATTTT
385 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
13927945 TCATGATTTT-GAAAACCTTTTACGGTTCTGAATTTTTTTAAAATTTTTTCGGCAGGAGTTTTGG
450 TCATGATTTTCG-AAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
*
13928009 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAA-TCAGCTAAAAA
513 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
13928073 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
578 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGC
* * * * **
13928138 TACTGACAGCAAACCTGTAAAATCAT-GAACGCTCTTTAAGGGGGTGTGAGTTGTTGAGGTTTGA
643 TACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
* * * * *
13928202 TGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCTTCACACATCATGTCCGTACAAC
707 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-AC
* ** *
13928267 CCCCC-GACCCGTCGATCGTCGAAACCCCAATGCCGCCGATCA--GG--TTCTCCAG-CGATGCT
771 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-C-ATCAGTGGCCTTCTCCAGTCGATGCT
* *
13928326 CCGGTGATGGTGCCCCGACGAAGAAAAATGC-GACGCCAGCAC
834 CCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCAC
* *
13928368 ATGAC-CGAGCCCAGCATGTGCTGCTGTAACCCTCGGTTCAGTTTGATCTTAGACTAGGAATGAA
1 ATG-CTCGAGCCCAGCATGTGCTGCCGCAA-CC-C---TCA----G-TC-----C---G---G-A
* * * * *
13928432 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCTATGAAATGAGCGTTCGG
43 -TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * ** * * * * *
13928497 GCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTTGAGGATCGGTCGAGTTCTCGTCAGCGTGC
107 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTC-TCGTGC
** * ** * * * *
13928562 TGTCGATCCTACTGTTGCAACCCTCAGTCTGGTCCAATCTTCGACTGCGAATGAACTCCGTATGC
170 TACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
13928627 CTAAGCCAACCGATGAGACGAGCGGACGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATG
235 CTAAGCCAACCGACGAAACAAGC-GA-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* ***
13928692 CGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAA
298 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
13928757 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
363 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
13928822 AAGACGACTCGTTTTCTATTTTTCATGATTTACGAACCTTTTTACGGTTGGGGATTTTTTAAAAC
428 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAA-
* * *
13928887 TTTTTT-GGAAGGAGTTCTGGCCCCCAAACTTGGTAGACATGATTCTTGTATTTTTTTTGGCATG
492 TTTTTTCGGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
13928951 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
556 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
13929016 CCATTT-AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
621 CCATTTCAA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * * *
13929080 GGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGCGCCAAGTACTAGCACACA
685 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
13929145 TCGTACATCATGTGCGTACATCCCCTGGCCCCCCCGATCGCCGAAACCCCAATGCCG--TCAGTT
750 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCATCAG-T
* * * * *
13929208 AGG--TTCTCCGGT-GATGGTCCGACGATGGTGCCCCGACGAACAAAAATGCGGTACCAGCACAA
814 -GGCCTTCTCCAGTCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT---G---CAGCACCA
13929270 GCAC
872 GCAC
* *
13929274 AAGCTCGAGCCCAGCATGTGTTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAAC
1 ATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC-A----G-----TC-----C---G---G-A-
* *
13929339 TCCGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGG
43 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
** * * * * * *
13929404 CGCTCAGGAGGCCAGATGGGCGGGATGAGTAAGCCGAGTATCGGTCGGGTTCCCCTTTGCGTGCT
108 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCT-CGTGCT
* * * *
13929469 ACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATTAACTCCGTATACC
171 ACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
*
13929534 TAAGCCAACCGACGAAACGAACGGACGGGCGGACGGGCGGACGGGCGGACGGGCAGGCACTACGT
236 TAAGCCAACCGACGAAAC--A---A---GC-GA---G-GG-C--G-GG-C--G--GGCACTACGC
* *
13929599 CGGCCAGAGACACGGGATGCGCGAGCCGCT-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
279 CGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*** * * * * *
13929663 TTCATATTTCTGCATTTTAATTCCATTCTTATTGCTTGCAAATTCATACAACGGTCCCTTAAGCC
343 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
13929728 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
408 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTAC
* * * ** *
13929793 GGTTTGGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTCTCCCCAAACTTGGTATACGTGATCCT
473 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
13929858 TGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGAC
538 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*** * *
13929923 CATTTGAAAAAAGTGTCCCCATTTTGGACACTTAAATGGCTACTGGCAGCAAACCAGTAAAATCT
603 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* ** *
13929988 CAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGACAAGGGATAGGCGGCCAATATAAGGG
668 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
13930053 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
733 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
13930096 AACCCCCTAT
Statistics
Matches: 3714, Mismatches: 511, Indels: 327
0.82 0.11 0.07
Matches are distributed among these distances:
868 1 0.00
869 61 0.02
870 6 0.00
871 5 0.00
872 1 0.00
873 2 0.00
874 3 0.00
876 1 0.00
877 1 0.00
878 1 0.00
879 3 0.00
880 4 0.00
881 5 0.00
882 18 0.00
883 65 0.02
884 232 0.06
885 369 0.10
886 9 0.00
887 2 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 214 0.06
894 257 0.07
895 169 0.05
896 33 0.01
897 9 0.00
898 22 0.01
899 258 0.07
900 254 0.07
901 112 0.03
902 10 0.00
903 132 0.04
904 4 0.00
905 6 0.00
906 230 0.06
907 3 0.00
908 7 0.00
909 74 0.02
910 163 0.04
911 5 0.00
913 1 0.00
914 489 0.13
915 3 0.00
916 1 0.00
917 2 0.00
918 1 0.00
920 1 0.00
921 2 0.00
922 1 0.00
924 1 0.00
925 246 0.07
926 209 0.06
927 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
ATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGATCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
GATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTCGTGCTACCGATCCTGCTGCCGCAACCCTCG
GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAG
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGTCGGAACCCCAATGCCGCATCAGTGGCCTTCTCCAGTCGATGCTCCGGCGATGGTG
CCCCGACGAAGAAAAATGCAGCACCAGCAC
Found at i:13928453 original size:26 final size:26
Alignment explanation
Indices: 13928415--13928467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13928405 TCAGTTTGAT
13928415 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13928441 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13928467 C
1 C
13928468 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13929358 original size:26 final size:26
Alignment explanation
Indices: 13929322--13929372 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13929312 TGGTCCAATC
13929322 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
13929348 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13929373 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:13929568 original size:8 final size:8
Alignment explanation
Indices: 13929555--13929587 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
13929545 ACGAAACGAA
13929555 CGGACGGG
1 CGGACGGG
13929563 CGGACGGG
1 CGGACGGG
13929571 CGGACGGG
1 CGGACGGG
13929579 CGGACGGG
1 CGGACGGG
13929587 C
1 C
13929588 AGGCACTACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.12, C:0.27, G:0.61, T:0.00
Consensus pattern (8 bp):
CGGACGGG
Found at i:13930195 original size:26 final size:26
Alignment explanation
Indices: 13930166--13930218 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13930156 CCGGTCCGAT
13930166 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
13930192 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13930218 C
1 C
13930219 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13931114 original size:26 final size:26
Alignment explanation
Indices: 13931063--13931115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13931053 CCGGTCTGAT
*
13931063 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13931089 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13931115 C
1 C
13931116 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13931649 original size:26 final size:26
Alignment explanation
Indices: 13931611--13931663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13931601 TTGGTCCAAT
*
13931611 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
13931637 CTTAGAGTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13931663 C
1 C
13931664 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13932983 original size:905 final size:893
Alignment explanation
Indices: 13931235--13934293 Score: 3832
Period size: 905 Copynumber: 3.4 Consensus size: 893
13931225 TGCCAGAGCA
* * *
13931235 TTTGTTGGCATGCATAAAAAAATTCAGCTAAGAACTCGAAGTGTCCAAGATTTTGTGACCATTTG
1 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
13931300 AAAAAAGTGTCCCTATTTCAAACACTTTAATGACTACTGGCAGCAAACCTGAAAAATCTCAAATG
66 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
** * *
13931365 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACAAGCGATAGGGGGTCAATATAAGGGCCAAGT
131 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
13931430 ATCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCCGATCGCCGGAACCCAAATG
196 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATG
* * *
13931495 CCGTCGGTCAGGTTCTCTGGTGATGCTCCGATGATGGTGCCCCGGA-GAA-AAAAAATACGGCAC
261 CCGTCGATCAGGTTCTC----GA------GACGATGGTGCCCC-GACGAAGAAAAAA-GCGGCAC
* * * * * **
13931558 CAGCACAAGCCCGAGCCGAGCATGTGCTGCCGCAACACTCAGTTTGGTCCAATCTTAGACTGGGA
314 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-TGGTTGGTCTGATCTTAGACTGGGA
* *
13931623 ATGAACTCCGTATGCTTAGAGTAGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
378 ATGAACTCC-TATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
* * *** * * *
13931688 CGCGGGCGCTCAG-CTGCCAGTGACACGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTG
441 CGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTATG
* * * * * *
13931752 CATGCTGTCGATCCTGCTGTCA-CAACCTTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCC
506 CGTGCTGCCGATCTTGCTGT-AGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCC
*
13931816 GTATGCCTAAGCCAACCGAC-AAA--ACGAACGGGGGGCGGGT-GGGC-GG-GAACTACGTCGGC
570 GTATGCCTAAGCCAACCGACGAAACGACGAA-GGGGTGCGGGTCGGGCGGGCGAACTACGTCGGC
*
13931875 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCAT
634 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
13931940 ATTTTTGCACGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
699 ATTTCTGCATGCCAATGG-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
13932005 GTGAAGTTTCATGGCAAGACGACTCT-TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTT
763 GTGAAGTTTCATGGCAAGACGACT-TGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * * *
13932069 CAAGATTTGTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATAATCCTTGTA
827 CAGGATTTGTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTA
13932134 TT
892 TT
* * *
13932136 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTGGAAGTGTACAAGATTTTGTGACTATTTG
1 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
13932201 AAAAAAGTTTCCCCATTTTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
66 AAAAAAGTGTCCCCA-TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
13932266 GCTCTTTGAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
130 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
13932331 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGCGATCGCCGGAACCCCAAT
195 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAAT
** * *
13932396 GCCACCGATCAGGTTCTC-AGACGATGGTGCCCCGATGAAGAAAAAAGCGGAACCAGCACATGCC
260 GCCGTCGATCAGGTTCTCGAGACGATGGTGCCCCGACGAAGAAAAAAGCGGCACCAGCACATGCC
*
13932460 CGAGCCCAGCATGTGCTGCCGCAACCCTTGGTATGGTTTGATCTTAGACTGGGAATGAACTCCAT
325 CGAGCCCAGCATGTGCTGCCGCAACCCTTGGT-TGGTCTGATCTTAGACTGGGAATGAACTCC-T
* **
13932525 ATGCTTAGACTGCGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGCGCGGGCGCTC
388 ATGCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGCGCTC
* *
13932590 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTGCCGA
452 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTATGCGTGCTGCCGA
* * *
13932655 TCTTGCTGTTGCAACCCTCGGTCCAGTCTGATCTTAGACT-GAGAATGAACTTCGTATGCCTCAG
517 TCTTGCTGTAGCAACCCTCGGTCCAGTCTGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAG
13932719 CCAACCGACGAAACGAGCGAAGGGGATAGCGGGCGGTCGGGCGGGCAAGAACTACGTCGGCCAGA
581 CCAACCGACGAAACGA-CGAAGGGG-T-GC--G-GGTCGGGCGGGC--GAACTACGTCGGCCAGA
* *
13932784 GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTT
638 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
** * *
13932849 CTGTGTGCCAATGAGATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACATGA
703 CTGCATGCCAATG-GATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
**
13932914 AGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGA
767 AGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGA
**
13932979 TTTGTTAAAATTTTTTCGGAATTAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATT
832 TTTGTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
13933041 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAGAAGATTTTGTGACCTTTTG
1 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
13933106 AAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAACTG
66 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
13933171 CTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
131 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
13933236 ACCAGCACCCATCGCACATCAT-TGCGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAAT
196 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCAGAACCCCAAT
* * * * * *
13933300 GTCGTC-AGTCAGGTTCTC-CGACGAGGGCGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
260 GCCGTCGA-TCAGGTTCTCGAGACGATGGTGCCCCGACGAAGAAAAAAGCGGCACCAGCACATGC
* * *
13933363 TCGAGCCCAGCATGTGCTGCCGCAACCC--------TC-GGTC-----C---G---G---TCCGA
324 CCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTGGTCTGATCTTAGACTGGGAATGAACTCCTA
* * *
13933405 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTTA
389 TGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGCGCTCA
* *
13933469 GCCGAG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTATGCGTGCTGCCAA
453 GCCG-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTATGCGTGCTGCCGA
* * * * *
13933533 TCTTGC--TAGCACGACCCTCGATCCAGT-TCAAGCTTCGACTAGGAATGAACTCCTTATGCCTA
517 TCTTGCTGTAGCA--ACCCTCGGTCCAGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTA
* * * * *
13933595 AGCCAACCGATGAAAC-A--AACGGGT--GGG-CGGGCGGGC--ACTATGCCGGCCAGGGAGACG
579 AGCCAACCGACGAAACGACGAAGGGGTGCGGGTCGGGCGGGCGAACTACGTCGGCCAGAGAGACG
* * * *
13933652 AGATGCGCAACCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
644 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* * *
13933717 GCCAATGCCATTCTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
709 GCCAATG-GATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
13933782 ATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTC-GGATTTTT
773 ATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCAGGATTTGT
* * *
13933846 TAAAAATATTTTCGGAAGGAGTTTTTGCCCCAAACATGGTAGACGTGATCCTTGTATT
837 T-AAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * ** * **
13933904 TTTGCTGCCATGCACAAAAAAATTCAGCCAAAATTTTGAAGTCCACAAGATTTTGTGACCATTTG
1 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * * *
13933969 AAAAAAGTGTCCTCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATA
66 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
13934034 TTCTTTAAGGGGGTATGAGTTC-GGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
131 CTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * ***
13934098 TACCAGCACCCATTGCACATTATGTGCGCACA-----C--CCCCCTCGATCATTAGAACCCCAAT
195 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAAT
*
13934156 GCCGTCGATCAGGTTCTCCGGCGATATTCCGGTGATGGTGCCCCGACGAAGAAAAATA-CGGCAC
260 GCCGTCGATCAGGTTCT----CGAGA---C---GATGGTGCCCCGACGAAGAAAAA-AGCGGCAC
*
13934220 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTTCGGTCCT-ATCTTAGACTGGG
314 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTT-GGT-CTGATCTTAGACTGGG
13934284 AATGAACTCC
377 AATGAACTCC
13934294 GTAGTTTTTT
Statistics
Matches: 1895, Mismatches: 189, Indels: 158
0.85 0.08 0.07
Matches are distributed among these distances:
856 36 0.02
857 1 0.00
858 1 0.00
860 1 0.00
861 1 0.00
862 193 0.10
863 247 0.13
864 9 0.00
866 9 0.00
867 64 0.03
868 1 0.00
873 1 0.00
874 5 0.00
876 5 0.00
877 5 0.00
878 172 0.09
879 5 0.00
880 3 0.00
882 1 0.00
883 1 0.00
885 1 0.00
886 1 0.00
888 1 0.00
889 1 0.00
890 5 0.00
891 149 0.08
892 120 0.06
893 3 0.00
894 3 0.00
895 6 0.00
896 4 0.00
897 3 0.00
899 1 0.00
900 3 0.00
901 76 0.04
902 183 0.10
903 9 0.00
904 240 0.13
905 324 0.17
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (893 bp):
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATG
CCGTCGATCAGGTTCTCGAGACGATGGTGCCCCGACGAAGAAAAAAGCGGCACCAGCACATGCCC
GAGCCCAGCATGTGCTGCCGCAACCCTTGGTTGGTCTGATCTTAGACTGGGAATGAACTCCTATG
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTATGCGTGCTGCCGATCTT
GCTGTAGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGACGAAGGGGTGCGGGTCGGGCGGGCGAACTACGTCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
GATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTGTTAAAATTTT
TTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATT
Found at i:13934782 original size:26 final size:26
Alignment explanation
Indices: 13934753--13934805 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13934743 TCGGTCCAAT
13934753 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13934779 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13934805 C
1 C
13934806 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13935677 original size:26 final size:26
Alignment explanation
Indices: 13935648--13935700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13935638 ACTGTCCGAT
13935648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13935674 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13935700 C
1 C
13935701 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13936589 original size:26 final size:26
Alignment explanation
Indices: 13936560--13936612 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13936550 CCAGTCTGAT
13936560 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
13936586 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13936612 C
1 C
13936613 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13937015 original size:26 final size:26
Alignment explanation
Indices: 13936983--13937039 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
13936973 GACGACTCGT
** * *
13936983 TTTTTATTTTTCATGATTTTTGAAAC
1 TTTTTATGGTTCAGGATTTTTGAAAA
*
13937009 TTTTTATGGTTCAGGATTTTTTAAAA
1 TTTTTATGGTTCAGGATTTTTGAAAA
13937035 TTTTT
1 TTTTT
13937040 TCGGATGGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.05, G:0.11, T:0.61
Consensus pattern (26 bp):
TTTTTATGGTTCAGGATTTTTGAAAA
Found at i:13939658 original size:886 final size:887
Alignment explanation
Indices: 13937543--13944577 Score: 8318
Period size: 902 Copynumber: 7.9 Consensus size: 887
13937533 AGGGGGCCCA
* * **
13937543 CTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTTTGATCTTAGACTGGGAATGAA
1 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * * * * *
13937608 CTTCGTATGCCTAAGCCAATCGATGAAATGAGCGGGTGGAAGGGCGGGCGGGCACTATGTCGACC
66 CTTCGTATGCCTAAGCCAACCGACGAAACGAGC----GG-CGGGCGGGCGGGCACTACGCCGGCC
* * * * * *
13937673 AGAGAGACGGGATTCACAAGCCGTGGATCGATAGGGTGATAGGTGGCTTTAAGCACATCTTCATA
126 AGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* ** * *
13937738 TTTTTTTATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACG
191 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * * **
13937803 TGAAGTTCCATGGCAAGAAGATTCGTTTTCTATTTTTCA-CATTTTTTGAAAACTTTTTGCAATT
256 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTTG-AAACTTTTTACGGTT
* * * * * * *
13937867 CGAGATTTTTTAAAATTTTTTCGGAAGTAGTTTTGGCCCCAAACGTGGCAGAAGTGATCCTTGTG
319 CGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
13937932 TTTTTGTTGGCATGGACAAAAAAATTCAGGTAAAAACTCGAAATGTGCAAGATTTTGTGACCATT
384 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
13937997 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAG
449 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
13938062 GGCTTTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAA
514 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * ** *
13938126 GTACCAGCACCCATTGCACATCATGTGCACACACCCCCCGGCCCCCCCAATCGCCGGAACCCTAA
579 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-GCCCCCCTGATCGCCGGAACCCCAA
* ** * * *
13938191 TGCCGCCGGTCGGGTTCTTCGACGATGCTTTAGCGATGGTGCCCTGACGAAGAAAAATACGGCAC
642 TGCCGCCGGTCAGG-TC-T----GAT-C-CGA-CGATGGTGCCCCGACGAAGAAAAATTCGACAC
* * * * * *
13938256 CAGCACATGCCTGAGCCCAGCATGTGCTGCCTCAACCCTTGGTCCGATCCGATCTTAAACTGGTA
698 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGA
* * *
13938321 ATGAACTCCTTATG-TTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCAT-GAAACGATC
763 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-TCGAAACGAGC
* *
13938384 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCC
827 GTGCTGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
** * *
13938445 CTCTGCGTGCTGCCGATCCTGCTGTGGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAA
1 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
* *
13938510 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGATGGGCGGGCGGGCACTACGCTGGCC
66 CTTCGTATGCCTAAGCCAACCGACGAAACGAGCGG-C----GGGCGGGCGGGCACTACGCCGGCC
** *
13938575 AGAGAGACAGGATGCGCAAGCCACGGATCGATAGGGTGGTCA-GTGTGTTTAGGCACATCTTCAT
126 AGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCTTCAT
* *
13938639 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCAC
190 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
13938704 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC
255 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * ** *
13938769 GGGATTTTTTTAAATTTTTTCGGAAGGCTTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTAT
320 GGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
13938834 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTA
385 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *** *
13938899 GAAAAAAATGTTTGCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAAT
450 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
13938964 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
515 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
** *
13939029 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCTTCCCCCTGATCGCCAGAACCCCAATGC
580 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCTGATCGCCGGAACCCCAATGC
* * *
13939094 CGCTGG-CAAGG-CT-ATCCGGCGATGGTGCCCCGACGAGGAAAAATTCGACACC-GACACATGC
645 CGCCGGTC-AGGTCTGATCCGACGATGGTGCCCCGACGAAGAAAAATTCGACACCAG-CACATGC
**
13939155 CCGAATCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCG
708 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCG
* *
13939220 TATGCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCTCGAAACAAGCGTGCTGGCGCT
773 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCTGGCGCT
* * * * *
13939285 CAGCTGGCCAGAGGGGCGGGATGTGTAAGCCGGGGATCAGCCGGGTCCCC
838 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
** * * * *
13939335 CTCTATGTGCTACCGATCCTACTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAA
1 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
* *
13939400 CTTCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAG
66 CTTCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAG
* * * *
13939465 AGACAAGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTA
130 AGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
13939530 TGCGTTCCAATGCCATTTTTATGGATTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAA
195 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
13939595 GTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
260 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
* * * *
13939660 TTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTAGGTAGACATGATCCTTGTATTTTTG
325 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
** * **
13939725 TTGGCACACACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTCAAAAA
390 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * ** *
13939790 AAGTGCCCCCATTTCAGACACTTTAGTAACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCT
455 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
13939855 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
520 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
13939920 GCACCCATTGCACATCATGTGCGCACACCCCC-CCCGGGCCCTTCAATCGCTGGAACCACAATGC
585 GCACCCATCGCACATCATGTGCGCACACCCCCGCCC---CCC-T-GATCGCCGGAACCCCAATGC
* * ** * *
13939984 CACCGGTCATGTTCTCTAGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAG
645 CGCCGGTCA-G--GTC---TGA---TCCGACGATGGTGCCCCGACGAAGAAAAATTCGACACCAG
* * *
13940049 CACATGCTCGAGCCCAGCATGTGCTGTCACAA-CC-C--T-C-A---G----T---CT-GG--T-
701 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
* *
13940094 --CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTG-
766 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGC
* * *
13940152 TGG-GTACTCAGTCGGCCAGAGGGGCGGGATACGCAAGCCGGAGATCGGTCGGGTCCCC
831 TGGCG--CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * * * ** *
13940210 CTCTGCGTGCTGTCGATCATGCTCCCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAA
1 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * * * * ** *
13940275 CTCCGTATGCCTAAGTCATCCGACGAAATGA---GCGGGCGGGCGGGCATTATGATGGCTAGAGA
66 CTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * * *
13940337 GACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCT
131 GACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
**
13940402 ATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
196 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
13940467 TTTCATGGCAAGACGACTCGTTTTCTATTTTGTCAAGATTTTTGAAACTTTTTACGGTTCGAGAT
261 TTTCATGGCAAGACGACTCGTTTTCTATTTT-TCATGATTTTTGAAACTTTTTACGGTTCGGGAT
** *
13940532 TTTTTAAAATTTTTTCGGCAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
325 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
13940597 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAA
390 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
13940662 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCT
455 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
13940727 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
520 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
13940792 GCACCCATCGCACATCATGTGCGCACACCCTCAGCCCCCCCGATCGCCAGAACCTCATTGCCACC
585 GCACCCATCGCACATCATGTGCGCACACCC-CCGCCCCCCTGATCGCCGGAACCCCAATGCCGCC
* * * * * *
13940857 GGTCACGTTCTCTGATGATGCTATGATGATGGTGCCCCGGCGAAGAAAAATGC-AGCACCAACAC
649 GGTCA-G--GTC---TGAT-C--CGACGATGGTGCCCCGACGAAGAAAAATTCGA-CACCAGCAC
* * * * *
13940921 ATG--CTAGCCCAGCATGTGCTACCGCAACCATCGGTCCGGTCTGATCTTAGACTGGGAATCAAC
704 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC
* * * * *
13940984 TTCGTATGCTT-GACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCAGG
769 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCTGG
* * * * * *
13941048 TGCTCAACCGGCCAGAGGGGCGAGATGCACAAGACGGGGATCGGTTGGGTCCCC
834 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * * * * * * * *
13941102 CTCTACGTGCTGTCGATCCTGCTACTGCAACCTTCGGTCTGGTCCGATCTTAGACTGAGAATGTA
1 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * * * * *
13941167 CTTTGTATGCCTAAACCAACCGACGAAACGAGTGGGCGGGCTGGCGGGCGGGGACTGCGCTGGCA
66 CTTCGTATGCCTAAGCCAACCGACGAAACGA----GC-GGCGGGCGGGCGGGCACTACGCCGGCC
*
13941232 AGAGAGA-ATGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
126 AGAGAGACA-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
13941296 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
190 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
13941361 GTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTAACCGA-TTTTGAAACTTTTTAC-GTT
255 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACGGTT
* * * * * *
13941424 TGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTTGG-CCCAAACTTTGTAGACGTCGAT-CTTT
319 CGGGATTTTTTAAAATTTTTTCGAAAGGA-GTTTTGGCCCCAAACTTGGTAGACGT-GATCCTTG
*
13941487 TATTTTTCTTGGCATTGCACAAAAAATATTCAGCTAGAAAACTCGAAGTGTAACAAGGA-TTTGT
382 TATTTTTGTTGGCA-TGCACAAAAAA-ATTCAGCTA-AAAACTCGAAGTGT-ACAA-GATTTTGT
*
13941551 GACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
442 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
13941616 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAA
507 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
13941681 GGGCCAACTACCAGCACCCATCACACATCATGTGCGTACACCCCCCCGGCCACCCTGATCGCCAG
572 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCC-GCCCCCCTGATCGCCGG
** ** * *
13941746 ATGCCCTTTGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAA
634 AACCCCAATGCCGCCGGTCAGG-TCT-----GA---TCCGACGATGGTGCCCCGACGAAGAAAAA
* *
13941811 TGT-GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAA----C---CC--T-TGATC--
690 T-TCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTT
* * * *
13941863 --A--GGGAAAGAACTCCGTATGCTTAGATTGGGAATGAACTCAGTATGCCTAAGTCAACCCACG
754 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCG
* * * *
13941924 AAACGAGCGTG-TGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGTCAGGGATCGG-CTGG
819 AAACGAGCGTGCT-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GG
13941987 GTCCCC
882 GTCCCC
* * * * *
13941993 CTCTGCATGCTACCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAA
1 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * * * *
13942058 CTTCGTATGCCTAAGCCAATCGACGAAACAAGCATGCGGGTGGGC--GCTC-A-GTCGGCCAGAG
66 CTTCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAG
* * *
13942119 AGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
130 AGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
13942184 TACATGCCAATGCCATTTTTATGGCTTGTAAATTAACACAATGGTCACTTAAGCCTTCACGTGAA
195 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
13942249 GTTTCACGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAT
260 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
* * *
13942314 TTTTTAAAATTTTTTTGAAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTGTG
325 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
13942379 TCGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
390 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
13942444 AAGTGTCCCCA--TCGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
455 AAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
13942507 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACC
519 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
13942572 AGCACCCATCACACATCATGTGCGCACACCCCGTCGGCCCCCCTGATCGCCGGAACCCCAATACG
584 AGCACCCATCGCACATCATGTGCGCACACCCC--C-GCCCCCCTGATCGCCGGAACCCCAATGCC
* * ** *
13942637 GTCGGTCAGGTTCTCCGGTGATGCTCCGACGACGGTGCCCCGGTGAAGAAAAATGT-GGCACCAG
646 GCCGGTCAGG---T-C--TGA---TCCGACGATGGTGCCCCGACGAAGAAAAAT-TCGACACCAG
* * * *
13942701 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTATGATCTTAGACTGGGAATC
701 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
* * ** *
13942766 AACTCCGTATTCTTAGAGTGGGAATGAACTCTATATGCCTAAGTCAA-CCTATGAAACGAGCGTG
766 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCT-CGAAACGAGCGTG
* * ** * * *
13942830 CGGGAGCTCAGCTAGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGATCGGGTCCCC
830 CTGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * * * * *
13942888 CTCTGCATGTTGCCGATCTTGCTGCTGCAACTCTC-GATCCGGTCGGATCTTAGACTGGGAATGA
1 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGA
* * * * * * *
13942952 ACTCCGTATGCCTAAGCCAACCAACGAAACAAACGGGCGGTTGGGTGGTCGGGCACTACGTCAGC
65 ACTTCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGG--GCG-GG-CGGGCACTACGCCGGC
* * * *
13943017 CAGAGAGAC-GAAATGCGCAAGCCGTGGATGGATAGGTTGGTAGGTGGGTTTAGGTACATCTTCA
125 CAGAGAGACAG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
13943081 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGTTCCTTTAAGCCTCCA
189 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
13943146 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
254 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
** * *
13943211 TAGGATTTTTTAAACTTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
319 CGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
13943276 TATTTT-TTGGCATGCAAAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
384 T-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
13943340 TTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGTAGCAAACCTATAAAATCTCAA
448 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
13943405 ATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGAGGGATAGGGGGCTAATAGAAGGACCA
513 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
13943470 AGTACTAGCACCCATCGCACATCATGTGCCCACACCCCCCCCTCGACCCCCC-GATCGCCGAAAC
578 AGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCC-CG-CCCCCCTGATCGCCGGAAC
* * *
13943534 CCCAATGCTGCCGGTCAGGTTCTCCGGCGGTGTTCCGACGATGGTGCCCCGACGAAGAAAAATGC
637 CCCAATGCCGCCGGTCAGG---T----C--TGATCCGACGATGGTGCCCCGACGAAGAAAAATTC
** * *
13943599 GGTACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
693 GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGAC
*
13943664 TGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAT-GAAA
758 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-TCGAAA
* * * * ** * * *
13943728 CAAGTGTG-TGGGAGCTCAGCCGGCCAAATAGGCGGGATGCGCAAGCCGGTGATCGATTGGGTCC
822 CGAGCGTGCT-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
13943792 CC
886 CC
* * * *** * * *
13943794 CTCTGCATGCTGCCAATCCAGCTATTGCAACCCTC-GATCCGGTCCAATCTTAGACTAGGAATAA
1 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGA
* ** * **
13943858 AC-TCTATATGCCTAAGCCAACAAACGAAATGA---GCGGGCGGGCGGGCACTACGCCGGCCCTA
65 ACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* *
13943919 GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATAC-TCATATT
129 GAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-CTTCATATT
* ** * * * *
13943983 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACAGTCTCTTAAGCGTTCACATC
193 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * *
13944048 AAGTTTCATGGCAAGATGACTTGTTTTTTATTTTTCACGATTTTTGAAAATTTTTACGGTTTGGG
258 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG
* * * *
13944113 CTTTTTTAAAATTTTTTCGAAAGGACTTTTTGCCCCAAACTTGGTAGACGTAATCCTTGTATTTT
323 ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * *
13944178 TATTGGAATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAA
388 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
13944243 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCT
453 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
13944308 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTAC
518 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * *
13944372 TAGCACCCATCGCACATCATTTGCGCACACCCCCCGGCCCTCAC-GATCGTCGGAACCCTAATGT
583 CAGCACCCATCGCACATCATGTGCGCACA-CCCCC-GCCC-CCCTGATCGCCGGAACCCCAATGC
**
13944436 CGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGT-GACACCA
645 CGCCGGTCAGG---T-C--TGA---TCCGACGATGGTGCCCCGACGAAGAAAAAT-TCGACACCA
* * * *
13944500 GCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCC-AGTCCGATCTTAGACTGGGAA
700 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA-TCTGATCTTAGACTGGGAA
13944564 TGAACTCCGTATGC
764 TGAACTCCGTATGC
13944578 CAAAGTCAAC
Statistics
Matches: 5324, Mismatches: 637, Indels: 352
0.84 0.10 0.06
Matches are distributed among these distances:
866 1 0.00
867 21 0.00
868 1 0.00
869 73 0.01
871 174 0.03
872 301 0.06
873 2 0.00
874 6 0.00
875 171 0.03
876 3 0.00
877 8 0.00
878 2 0.00
879 240 0.05
880 33 0.01
881 15 0.00
882 13 0.00
883 201 0.04
884 62 0.01
885 7 0.00
886 473 0.09
887 10 0.00
888 6 0.00
889 105 0.02
890 227 0.04
891 178 0.03
892 175 0.03
893 10 0.00
894 147 0.03
895 193 0.04
896 7 0.00
897 59 0.01
898 462 0.09
899 48 0.01
900 220 0.04
901 275 0.05
902 523 0.10
903 318 0.06
904 205 0.04
905 3 0.00
906 325 0.06
907 11 0.00
908 5 0.00
909 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
CTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
GACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCTGATCGCCGGAACCCCAATGCCGCCGG
TCAGGTCTGATCCGACGATGGTGCCCCGACGAAGAAAAATTCGACACCAGCACATGCCCGAGCCC
AGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCTGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
Found at i:13943686 original size:26 final size:26
Alignment explanation
Indices: 13943657--13943709 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13943647 CCGGTCTGAT
*
13943657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13943683 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13943709 C
1 C
13943710 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13945306 original size:26 final size:26
Alignment explanation
Indices: 13945270--13945322 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13945260 TCGAACCGAT
13945270 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13945296 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13945322 C
1 C
13945323 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13946910 original size:26 final size:26
Alignment explanation
Indices: 13946858--13946910 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13946848 CCAGTTTGAT
*
13946858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
13946884 CTTAGATTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
13946910 C
1 C
13946911 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13947801 original size:26 final size:26
Alignment explanation
Indices: 13947764--13947814 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13947754 GGTTCGATCG
13947764 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
13947790 TAGACT-GAGAATGAACTCTGTATGC
1 TAGACTAG-GAATGAACTCCGTATGC
13947815 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:13949295 original size:901 final size:898
Alignment explanation
Indices: 13946557--13957689 Score: 14148
Period size: 900 Copynumber: 12.4 Consensus size: 898
13946547 TTTCATGGCA
* * *
13946557 AGACACTTTAAGGGCTACTGACAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
13946622 TTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** *
13946687 CAAGTGCGTACACCCCCCGACCCCCCCGGCCCCGTCGATCGCCGGAACCCCAATGCCGTCGGTCA
131 CATGTGCG--CA-----C-A-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* * ** * *
13946752 GGTTCTCCGGTGATTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAACACCAGCACAAGCTC
187 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
** * ** *
13946817 GAGCCCAGCATGTGCTAACGCATCCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTA
252 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
13946882 TGCTTAGATTGGGAATGAACTCTGCATGCCTAAGTCAACTCATGAAACGAACGTGC-GACTGCTC
317 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTC
* * * * * * * * * *
13946946 AGTCGACCATAGGGGCGGGATACGCAAGTCGGGGATTGACCGGGTCCCCCTCTGTGTGCTGCCAA
381 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGA
* * * * * * *
13947011 TCCTCCTGCCGTAACCTTC-GATTTGGTCTGATCTTAGACTGGGAATAAACTCCATATACCTAAG
446 TCCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
13947075 TCAACCGACGAAACGAGCGGGCAGGCGGGTGGGAGGGCACTACGTCGACCAGAGAGACAGGATGT
510 CCAACTGACGAAACGAGC--G--GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* **** *
13947140 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTTCATACATCTTCATATTTCTGCATGCCAAT
571 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
*
13947205 GCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
636 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
13947270 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA-ATTTTACGGTTCGGGATTTTTTAAAATT
701 AGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-T
13947334 TTTTTGGAAGGAGTTTTGGCCCC-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
765 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
13947398 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
830 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
13947463 TTTC
895 TTTC
13947467 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
13947532 TTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGACCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
13947597 CATGTGCGCACACCCCCCTCGGCCCTTCCCGATCGTCGGAACCCCAATACCGCCAGTCAGGTTCT
131 CATGTGCGCACA-CCCCC-CGGCCC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *** * *
13947662 TCGACGATGCTCCGATGATGGTGTGTCGACGAAGAAAAATGCAGCACCAGCACAAGCCCGAGCCC
193 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
13947727 AGCATGTGCTACCGTAACCATCGATCTGGTTCGATCGTAGACTAGGAATGAACTCCGTATGCTTA
258 AGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
13947792 GACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGCGCTCAGCCGGC
323 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
13947857 CAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGATCCTACT
388 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* * * * * *
13947922 ACCACAACCTTC-GATCTGGTCTGATCTTAGACTGGGAATAAACTCCATATGCCTAAGCCAACCG
453 GCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
* ** **
13947986 AGGAAACGAGCGGGCGGGCGGGCGGACGGGCACTACACCGGCCAGAGAGGAC-AAATGCGCACAG
517 ACGAAACGAGCGGGCGGGC--G-GG-CGGGCACTACGTCGGCCAGAGA-GACGGGATGCGCA-A-
* * **
13948050 GCCGTGGATTCGCATAGGGTGGGTAGGTGTGTTTTGGCACATCTTCATATTTCTATGTGCCAATG
575 GCCGTGGA-TCG-ATAGGGT-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* * *
13948115 CCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAG
637 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** * *
13948180 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGATTCAGGATTTTTTAAAATTG
702 GATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT-
*
13948245 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACA
766 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
13948310 AAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTGGAAAAAAGTGTCCCCAT
831 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
13948375 TTC
896 TTC
* *
13948378 AGACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** *
13948443 TTCTCGAGGTTCAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
13948508 CATGTGCGTACACCCCTCCTAGCCCCCCCGATCGTCGGAACCCCAATACCGCCAGTCAGGTTCTT
131 CATGTGCGCACACCCC-CC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
13948573 CGGCTATGCTCCGACGATGGTGCCTCGACGAAGAAAAATCCAGCACCAGCACAAGCCTGAGCCCA
194 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
13948638 GCATGTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTTCGTATGCTTAG
259 GCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
13948703 ACTGGGAATGAACTCTGTATCCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCTGCCGGCC
324 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * *
13948768 AAAGGGGCAGGATGCGTAAGTCGGGGATCGACTGGGTCCCCCTCTGCGTTCTGCCGATCCTACTG
389 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
* * * ** * *
13948833 TCGTAACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCATACGCCTAAGCCAACTGAC
454 CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
* * *
13948898 GAAACAAGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGAT
519 GAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * **
13948963 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGAAAATGCCATTTTTATGG
584 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
13949028 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
649 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
* * ** **
13949093 ACTATTTTTCATGATTTTCGTAACTTTTTGTGGTTCGGGATTTTTTAAAATCTTTTTGGAAGGAG
714 TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTGGAAGGAG
*
13949158 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
778 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
13949223 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
843 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
13949279 GGACACTTTAATGGCTAATGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
13949344 TTCTCGAGGTTTGATGTGGGATAGGGGGCCAATAT-AGAGGCCAAGTACCAGCACCCATTGCACA
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-GGCCAAGTACCAGCACCCATCGCACA
* * * * *
13949408 TCATGTGCGCACACCCCTCCGGCCCCCTCGATCGTCAGAACCCCAACGTCGCCGGTCAGGTTCTC
130 TCATGTGCGCACACCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * **
13949473 CGACGATGCTCGGACAATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATG-CCGAAGCGT
194 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG-AGCCC
* * *
13949537 AGCATGTGCTGCCGCAACCCTCGGT-TCAGTCCGATCTTAGACTGGGAATGAACTCCGCATGCTT
258 AGCATGTGCTGCCGCAACCCTCGGTCT-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
13949601 AGATTGGGAATGAACTCCGTATCCCTAAGTCAACCCGA-GAAACGAGCGTGCGGGTGCTCAGCCA
322 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** * *
13949665 GCCAGAGGGACGGGATGCGCAAGTCAGGGATCG-GTGGGTCCCTTTCAGTGTGCTGTCGATCCTG
386 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* * * *
13949729 CTACCGCAACCTTCAGT-TCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAAC
451 CTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
13949793 CGACAAAATGAACGGACGGGCGGGCGGGCACT--GTGCTGGCCAGATAGACGGGATGCGCAAGCC
515 TGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT-C-GGCCAGAGAGACGGGATGCGCAAGCC
* *
13949856 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTGCATGCCAATGCCATTT
578 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* *
13949921 TTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGAC
643 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* * *
13949986 TGGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGG
708 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GG
** * * *
13950051 AAGGAGTTTTTACCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
772 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
13950116 TTCAGCAAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTC
837 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
13950178 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
13950243 TTCTCGAGGTTTGATGAGGGATA---GG---------GGGCCAAGTACCAGCTCCCATCACACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * ** *
13950296 CTTGTGCGCACACCCCCTGG-CCCCCCGATCACTGGAACCCCAAAGCCATCGGTCAGGTTCTCTG
131 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * * *
13950360 ACGATGCTCCGGTGATGGTGCCCTGACAAAGAAAAATGCGGCACCAGCAAATGCCCGAGCCCAGC
196 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
13950425 ATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
261 ATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
13950490 AGGGAATGAACTCCGTATCCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAG
326 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * *
13950555 AGGGGCGGGATGAGCAAGCCGGGGATCG-GTCGGGTCCGCCT-TGGCGTGCTGTCGATCCTGCTA
391 AGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCT-GCGTGCTGTCGATCCTGCTG
* *
13950618 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGAC
454 CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
* * *
13950683 GAAACGAGCGGGCAGGCGGGCGGGGGTACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTAG
519 GAAACGAGCGGGCGGGCGGGC--GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
13950747 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCCATGCCATTTTTAT
582 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
** * * * * *
13950812 CACTAGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTACATGGCAAGAGGACTCAT
647 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
***
13950877 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAACTTTTTCATAAGG
712 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGG
* * * *
13950942 ATTTTTGGCCCCAAACATGGTAGCCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCA
776 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
13951007 GCTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
841 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
13951065 AGACACTTTAATGGCTACAGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** *
13951130 TTCTCGAGATTTGATGAGGGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
13951195 CATGTGCGCACACCCCCCAGCCCGCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
131 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** ** * * *
13951260 ACGATGCTCCGGTGATGGTTTCCTGATGAAGAAAAATAG-GGCATCAGCACATGCCCGAGCCCAG
196 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-GCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
13951324 CATGTGCTGCCGTAACCCTCGAT-TCGATCTGATCTTAGCCTGGGAATGAACTCCGTATGCTTAG
260 CATGTGCTGCCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
13951388 ATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACC
324 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * * *
13951453 AAAGGGTCCGGATGCGTAAGCCGGGGATCGA-TCGGGTCCCCCTCTACGTGCCG-CCATTCCTAC
389 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTGTCGA-TCCTGC
** * *
13951516 TGTTGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACTG
452 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
* * * * * * *
13951581 ATGAAACAAACGGGCAAGCTGGCGGCCAGGCACTACGTCGGCCAGAGAGATGGGATACGCAAGCC
517 ACGAAACGAGCGGGC--G--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* *
13951646 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
578 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * * *
13951711 TCATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGAC
643 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
** * *
13951776 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAAATATTTTC
708 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGA-TTTTTT-AAAAT-TTTTT
* * *
13951841 GGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGATAAAAA
770 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
13951906 CATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTC
835 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * **
13951970 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTTTTTAAGACGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
13952035 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
13952100 CATGTGCGCACACCCCCCGGCCCCCCCGATTCGTCGGAACCCCAACGCAGTCGGTCAGGTTCTCC
131 CATGTGCGCACACCCCCCGGCCCCCCCGA-TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * * *
13952165 GACGATGCTCCGACGATGATGGCCCGATGTAGAAAAATGTGGCACTAGCACATGCCCGAGCCCAG
195 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
13952230 CATGTGCTGCTGCAACCCTCAGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
260 CATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * * *
13952295 ATGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAACGTACAGGCGCTCAGTCGGCCA
325 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** * *
13952360 GAAGGGCGGGATGCGCATCCCGGGGATC-AGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTG
390 GAGGGGCGGGATGCGCAAGCCGGGGATCGA-CTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
*** * **
13952424 CTATAACCCTTAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
454 CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
* * * * *
13952489 AAAACGAGCGGACGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCATGGAT
519 GAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
13952554 CGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGTCATTTTTATGG
584 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * *
13952619 CCTATAAATTCATACAACGGTCCCTTAAGCC-TCTACGTGAAGTTTCATGGCAAGATGACTCGTT
649 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAGTTTCATGGCAAGATGACTCGTT
* *
13952683 TTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
713 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGA
* * * * * *
13952748 GTTTTGGTCCCAAACATT-GTATATGTGATCCTTGTATTTTTGTTGGCATACGCAAAAGAATTCA
777 GTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
13952812 GCCAAACACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
841 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
13952870 AAACACTTTAATGGCTACTGGCAGCGAACCTATAAAATCTCAATTGCTCTTTAAGGGGTTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
13952935 TTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * * *
13953000 CATGTGCGCACACCCCCCCGGGCCCCCCGATCATCGAAACCCCAATGCAGTCGGTCACGTTCTCC
131 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
13953065 GGTGATGCTCTGACGATGGTGCCTCGGCGTAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
195 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
13953130 CATGTGCTGTCC-CAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
260 CATGTGCTG-CCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
13953194 ATTGGGAATGAACTCTGTATGCCTAAGTCTACCCACGAAATGAGCGTGCGGGCGCTC-GATCGGC
324 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGGC
* * * **
13953258 CAGAAGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTATGTGCTGTCGATCCTGCT
388 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* * * * *
13953323 GTCGCAACCCTTAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
453 GCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* ** *
13953388 CGAAACGAGCGGACGGGCGGTTGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
518 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
13953453 TCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGTCATTTTTATG
583 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* * * *
13953518 GCTTGTAAATTCATACAACGGTCCCTTAAGCCTTTACATGAAGTTTCAT-GCAAGATGACTCATT
648 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
* * * *
13953582 TTTTATTTTTCACGATTTTCAAAAC-TTTTAGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGT
713 TTCTATTTTTCACGATTTTCAAAACTTTTTA-CGGTTCGGGATTTTTTAAAATTTTTT-GGAAGG
* * * *
13953646 AGTTTTGGTCCCAAACTTTGTAGACGTGATCCTTTTATTTTTGTTGGCATACACAAAAAAATTCA
776 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
13953711 GCCAAACACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTC
841 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
13953769 AAACACTTTAATGGCTACTGGTAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
13953834 TTCTCAAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
13953899 CATGTGCGCACACCCCTCCGGCCCCTCCGATCACCGGATCCCCAATGCCGCAGGTCAGGTTCTTC
131 CATGTGCGCACACCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
13953964 GGCGATGCTCTGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
195 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * * *
13954029 CATGTGCTACCGCAACCGTTGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
260 CATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
13954094 CAGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCTGGCCA
325 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * * * * * *
13954159 AAGGGGCAGGATGCGTATGCCAGGGATCG-GTCGGGTCCCCATTTGCATGCTGCCGATCCTGCTA
390 GAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
* * *
13954223 CCACAACCCTCGGTCTGGTCTAATCTTAGAC-GGGAATGAACTCCGTATGCCTAAGCCAACTGAC
454 CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
* * * * ** ** *
13954287 GAAATGAACGGGCGAGTTGGCGGCCGGGCACTACGCCGGCCAGAGAGATAGGATGCAAAAGCTGT
519 GAAACGAGCGGGC--G--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
13954352 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTT
580 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * * *
13954417 ATGGTTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTC
645 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
* *
13954482 GTATTCTA-TTTT-----TTTT---AA------A----T----A--TTTT-CAA--------AAG
710 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAG
* * * * * *
13954513 TAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTT
775 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* **
13954578 AGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTGTTTC
840 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
13954637 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGGTCTTTAAGGTGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
13954702 TTCTTGAGGTTTGATGAGAGATAGGGAGCTAATATAAGGGCGAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * **
13954767 CATGTGAC-CACATCCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATACCATCGGTCAGG-T-T
131 CATGTG-CGCACA--CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
13954829 ------A---TCCGACGATGGTGCCCCGACGAAGAAAAAT-CTGGC-CCAGCACATGCCCGAGCC
193 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCC
* * * *
13954883 TAGCATGTGCTACCGCAACCCTCGGTCT-GATCTGATCTTAGACTGGTAATGAACTCCGTATGCT
257 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * * *
13954947 TAGACTGGGAATGAACTCCATGTCCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCACAGTCG
321 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
13955012 GCCAGAGGGGCGGGATGCGCAAGCCGAGAATCAACTGGGTCCCACTTTGCGTGCTGTCGATCCTA
386 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* * *
13955077 CT-ACGACAACCCTCAGT-TCGGTCTTATCTTAGA-TCGGGATTGAACTCC-TATGCCTAAGCCA
451 CTGCCG-CAACCCTCAGTCT-GGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
13955138 ACCGACGAAACGA----GCGGGTGGGCAGGCACTACGCCAGCCAGAGAGACGTGATGCGTAATG-
513 ACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA-GC
* * *
13955198 CATGGATCGATATGGTGGTAGGTGGG-TTAGGC-CATCTTCATATCTTCTG-GTGGCCAATACCA
577 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCGT-GCCAATGCC-
* * *
13955260 ATTTTTATGGCTT-TGAATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGA
639 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** *
13955324 CGACTCGTTTTCTATTTCTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
704 TGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
13955389 TCGAAAGGAGTTTTGGCCGCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
769 T-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13955454 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
833 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
13955519 C
898 C
* * *
13955520 AAACACTTTAATGGCTACTGGAAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
13955585 TTCTTGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGCCCAACTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** *
13955650 CATGTGTGCACACCACCCGGCCCCCCCGATCGCCGGAACCCTAATGCCGCAAGTCAAGTTCTCCG
131 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
13955715 GTGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGC
196 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* **
13955780 ATGTGCTGCCGCAACCGTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
261 ATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
13955845 AGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACAAGCGTACGGGCGTTCAGCCGGCCAG
326 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * **
13955910 AGGGGCGGGATGCGCAAGCCAGGGATC-AGCCGGGTCCCCCTTTGCGTGCTGTCGATCTTGCTAT
391 AGGGGCGGGATGCGCAAGCCGGGGATCGA-CTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC
* * * *
13955974 CGCAACCCTCGGT-TCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
455 CGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
* * * * *
13956038 GAAACGAGCAGACGGGTGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
519 GAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
13956103 CGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCAATTTTTATGG
584 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * * * * *
13956168 CCTATAAATTCATACAACGATCCTTTAAGCCTTTACGTGAAGTTTCATGGCAAGATGACTCGTTT
649 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
** * * *
13956233 TCTATTTTTCGTGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAAATATTTTCGGAAGC
714 TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGA-TTTTTT-AAAAT-TTTTTGGAAGG
* * **
13956298 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGATAAAAGCATTCA
776 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
13956363 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTC
841 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * **
13956421 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTTTTTAAGACGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
13956486 TTCTTGAGGTTTGATAAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
13956551 CATGTGTGCACTCCCCCCGACCCCCCCGATCGCCGGAACACCAATGCCGTCGGTCAGGTTCTCCT
131 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * ** * * *
13956616 GCGATGCTTCGGCGATGGTGCCTCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTACC
196 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
13956681 ATGTCCTGTCGCAACCCTTGGTCTGGTCCGATCTTCA-ACTGGGAATGAACACTGTATGCTTAGA
261 ATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTT-AGACTGGGAATGAACTCCGTATGCTTAGA
*
13956745 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCA
325 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * **
13956810 GAGGGGCGAGATGCGCAAGCTGGGGATCGA-TCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTG
390 GAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
* * * * *
13956874 GCACAACCCTCAGT-TCGGTCTGATCTTAGATTGGGAATGAACTCCGTATG-CTTAG---ACTGG
454 CCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * * * * *
13956934 C-TAACAAAACGAGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACAGGATGCGCAAGGCGTGG
518 CGAAAC-GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
13956998 ATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAGTGCCATTTTTAT
582 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * *
13957063 GGCTTGTAAATTCATAAAATGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGT
647 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
* * * *
13957128 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGTATTTTTTAAAAATTTTTTGGAAGA
712 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTGGAAGG
* * *
13957193 AATTTTGGCCCCGAAA-TTGGTAGACATAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATGT
776 AGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT-T
*
13957257 -AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTC
839 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
13957316 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATGTCAAATGCTCTTTGAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
13957381 TTGTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCACACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
13957446 CATGTGCGCACACCCACCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTTC
131 CATGTGCGCACACCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
13957511 GACGATGCTCCGGCAATGGTGCGCCGACGAAGAAAAATGCCGCACCAGCACATGTCCGAGCCCAG
195 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
13957576 CATGTGCTGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
260 CATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
13957641 TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCG
325 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
13957690 AGTGGGCAGG
Statistics
Matches: 8979, Mismatches: 1065, Indels: 372
0.86 0.10 0.04
Matches are distributed among these distances:
847 12 0.00
848 77 0.01
849 71 0.01
850 1 0.00
851 1 0.00
853 2 0.00
854 4 0.00
856 3 0.00
857 229 0.03
858 43 0.00
861 1 0.00
867 2 0.00
868 242 0.03
869 36 0.00
870 4 0.00
871 1 0.00
873 4 0.00
874 2 0.00
877 2 0.00
878 4 0.00
880 1 0.00
881 36 0.00
882 1 0.00
883 244 0.03
884 2 0.00
885 226 0.03
886 106 0.01
887 433 0.05
888 13 0.00
889 2 0.00
890 3 0.00
892 32 0.00
893 222 0.02
894 34 0.00
895 247 0.03
896 218 0.02
897 213 0.02
898 137 0.02
899 1257 0.14
900 1316 0.15
901 1010 0.11
902 376 0.04
903 209 0.02
904 363 0.04
905 283 0.03
906 340 0.04
907 11 0.00
908 9 0.00
909 134 0.01
910 514 0.06
911 246 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
AACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
Found at i:13950495 original size:26 final size:26
Alignment explanation
Indices: 13950457--13950507 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13950447 CTGGTTTGAT
13950457 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13950483 CTTAGAC-AGGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
13950508 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13952299 original size:26 final size:26
Alignment explanation
Indices: 13952263--13952315 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13952253 TTGGTTCGAT
*
13952263 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13952289 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13952315 C
1 C
13952316 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:13953192 original size:26 final size:26
Alignment explanation
Indices: 13953163--13953215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13953153 TTGGTCCGAT
13953163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13953189 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13953215 C
1 C
13953216 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13954091 original size:26 final size:26
Alignment explanation
Indices: 13954062--13954112 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13954052 CCGATCCGAT
*
13954062 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACAGGGAATGAACTCCGTATG
*
13954088 CTTAGACAGGGAATGAACTCCGTAT
1 CTTACACAGGGAATGAACTCCGTAT
13954113 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTACACAGGGAATGAACTCCGTATG
Found at i:13955849 original size:26 final size:26
Alignment explanation
Indices: 13955812--13955862 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13955802 CCAGTTCGAT
*
13955812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
13955838 CTTAGACAGGGAATGAACTCCGTAT
1 CTTAGACAGGGAATGAACTCCGTAT
13955863 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:13957645 original size:26 final size:26
Alignment explanation
Indices: 13957609--13957661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13957599 CTGATTCGAT
13957609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13957635 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13957661 C
1 C
13957662 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13958427 original size:26 final size:26
Alignment explanation
Indices: 13958391--13958442 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13958381 CCGATCCAGT
*
13958391 TTTAGACTGGGAATGAACTCTGTATG
1 TTTAGACTGGGAATGAACTCCGTATG
*
13958417 TTTAGAGTGGGAATGAACTCCGTATG
1 TTTAGACTGGGAATGAACTCCGTATG
13958443 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TTTAGACTGGGAATGAACTCCGTATG
Found at i:13959891 original size:26 final size:26
Alignment explanation
Indices: 13959860--13959910 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13959850 TACTCCGATC
13959860 TTAGACTGGGAAGGAACTCCGTATGT
1 TTAGACTGGGAAGGAACTCCGTATGT
*
13959886 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAAGGAACTCCGTATG
13959911 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAGGAACTCCGTATGT
Found at i:13961675 original size:26 final size:26
Alignment explanation
Indices: 13961639--13961691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13961629 CCATTCTGAT
13961639 CTTAGAATGGGAATGAACTCGGTATG
1 CTTAGAATGGGAATGAACTCGGTATG
* *
13961665 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCGGTATG
13961691 C
1 C
13961692 CTAAGTCGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCGGTATG
Found at i:13962545 original size:26 final size:26
Alignment explanation
Indices: 13962516--13962568 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13962506 CCAATCCGAT
13962516 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13962542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13962568 C
1 C
13962569 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13963244 original size:878 final size:875
Alignment explanation
Indices: 13958654--13964129 Score: 5784
Period size: 878 Copynumber: 6.2 Consensus size: 875
13958644 TCGGCCAGAG
13958654 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
1 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
13958719 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
66 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
13958784 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCAAACCCCCCGGCCCCCCCG
131 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCG
* * ** * *
13958849 ATCGTTCTAACCCCAATGCCACCGGTCAGGTTCTTCGATGATGCTCCGGGGATGGGGCCCCGACG
196 A------T-----C-AT-----CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGGCG
* * *
13958914 AGGAAAAATGCGACACCAGCACATG-CTCGAGCCCAACATGTGCAGCCGCAA----C---CC--T
243 AAGAAAAATGCG-CACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGT
*
13958969 C-G----T-G-C-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
306 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
13959016 AACCCACGAAACGAGCGTGCGGGCGCTTA-TCCGGCCAGAGGGGCGGGATGCGCAAGTCAGGGAT
371 AACCCAAGAAACAAGCGTGCGGGCGCTCAGT-CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * **
13959080 CGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTTGGTCCGGTCTGATCTTA
435 C-GTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCAATCTTA
*
13959145 GATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGAACGGGCGGGCGGG
499 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG--A--A--A--CGAACGGGCGGGCGGG
* * * * ** * * *
13959210 CACTACGTCGGCCAGAGAGACGGGAAGCACAAATCGTGGATTGATAGGGTGGTAAGAGGGTTTAG
556 CACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
13959275 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
621 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
13959340 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
686 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAC
* * *
13959405 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTGGGCCCCAAACATGGTAGACG
751 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
13959470 TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
816 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
13959530 AAATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
1 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
13959595 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGACGGATAGGGGG
66 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* ** *
13959660 CCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATCCGCGCAAACCCCCTGGCCCCCCAA
131 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG--CCCC--
* * * * *
13959725 TCGCCAGAACCTCGATGCCGCCGGTCAGGTTCTCCGATGATGCTTCGGCGATGGGGGCCCCGACG
192 -C-CC-G-A--TC-AT-----CGGTCAGGTTCTCCGACGATGCTCCGACGAT-GGTG-CCCGGCG
* * *
13959790 AAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTACTC
243 AAGAAAAATGCG-CACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
* * *
13959855 CGATCTTAGACTGGGAAGGAACTCCGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
307 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * * *
13959920 ACCCATGAAATGAA-CGTACAGTCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGTCGGGAATC
372 ACCCAAGAAA-CAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
* ** * * * * * *
13959984 GATCGAGTCCCATTCTACATGCTGCCGATCATGCTGCCACAAACCTCCG-TTCGGTCCAATCTTA
436 G-TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCT-CGATCCGGTCCAATCTTA
* ** ** *
13960048 GACTAGGAATGAACTCTGTATGCCTAAGCCAATTGACGAAACGAGGGGGTGGGCGAGTGGGCACT
499 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGC----GGGCACT
* * * *
13960113 ACGCCGGCTAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAAGCAA
560 ACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
**
13960178 ATCTTCATATTTCTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
625 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
13960243 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
690 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTT
* * *
13960308 TACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCTAAACTTAGTAGGA-GTGA
755 TACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTGA
* * *
13960372 TTCTTTTATTTTTGTTGGCATGCATAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
819 TCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
13960430 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
1 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
13960495 CTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGG
66 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
13960560 CCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGGGCGCACAACCTCCC-GACCCCCC
131 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACC-CCCTGGCCCCCC
* **
13960624 CGATCATCGGAACCCTAATTCCACCGGTCAGGTTCTCCGGC-ATTGCTCCGGTGATGGTGCCACG
194 CG---AT-------C--A-T----CGGTCAGGTTCTCCGACGA-TGCTCCGACGATGGTGCC-CG
* * ** * * * *
13960688 GCGAAAAAAAATGCGGCACAAGCACATGCCCAAGCCTAGCATGTGCTGCTGCAGCCCTCGGTCCG
240 GCGAAGAAAAATGC-GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCA
* ** * * *
13960753 GTTTGATCTTAGACCAGGAATGAACTTCGTAAGCTTAGACTGGGAATGAATTCCGTATGCCTAAG
304 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * ** * * * *
13960818 TCAACCCACGAAATGAGCGTACGATCGCTCAGCCGACCAGAAGGGCGGGATGCACAAGTCGGGGA
369 TCAACCCAAGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
* * ** * * * * * * *
13960883 TCGGTCGAGTCCCCCTTTGTGTGCTACCGATCCTACTATCGTAACCCTTGGTCCGATCCAATCTT
434 TC-GTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCAATCTT
* * *
13960948 AGACTGGGAATGAACTCCGTATGCTTAAGCCAACCGATGAAACGAACGGGCGGGTGGGCGGGCGG
498 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAA----C----GGGCGGGCGG
* * * * *
13961013 GCACTATGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTA
555 GCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *** **
13961078 GGCACATCTGCATATTTCTATGTGCCAATGCCATTTTTATCACTTGTAAATTCATACAATGGTCC
620 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
13961143 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
685 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAA
* ** * *
13961208 CTTTTTACGGTTCGGGATTTTGTAAAATTTTTTCAGAAGGATTTTTAGCCCCAAACTTGGTAGGA
750 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA-GA
* * * * *
13961273 -GTGATTCTTTTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTGCA
814 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
13961334 AGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
1 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
13961398 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGA
66 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
13961463 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCG
131 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCG
** * * *
13961528 ATCA-C---C-GGAAC-CC--CAATGCCGTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCA
196 ATCATCGGTCAGGTTCTCCGACGATG-C-TCCGACGATGGTG-CCCGGCGAAGAAAAATGC-GCA
* * * *
13961585 CCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCTACCGTCGGTCCATTCTGATCTTAGAATGGG
257 CCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGG
* * * *
13961650 AATGAACTCGGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCGAGCCACA-AAACAAG
322 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-AGAAACAAG
* * * * * ** * * *
13961714 CGTGCAGGCGCTCAGTCGACCAGAGGGGTGAGATGCGCAAGCCAAGGATCGACCGGGTCTCCCTT
386 CGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG-TCGGGTCCCCCTC
* *
13961779 TACGTGCTGCCGATCCTGCTACCGGAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTC
450 TACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTC
* * * * * *
13961844 TGTATGCCTAAGCCGACCGACGAAATGAGCGGACGGGCAGGCACTACGCTGGCTAGAGAGACGGG
515 TGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGG
* * * **
13961909 ATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTATGCACATCTTAATATTTCTGTGTGC
580 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
13961973 GAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCAT
645 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * *
13962038 GGCAAGATGACTCGTTTTCTATTTTTCGTAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTA
710 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAA
** *
13962103 AATTTTTTTGGAAGGTTTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
775 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
13962168 GCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACA
840 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
13962204 AGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
1 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
13962269 CCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGG
66 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
13962334 CCAATCTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCG
131 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCG
* * *
13962399 ATCATCGGTTAGGTTCTCCGACGATGCTTCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCACC
196 ATCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-GGCGAAGAAAAATGC-GCACC
* * * * *
13962464 AGCACATTCCTGAGTCGAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAA
259 AGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAA
13962529 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGT
* * * * *
13962594 GCGGGCGCTCAGTCGGCCGGAGGGGTGGGATGTGGAAGTCGGGGATCTGCCGGGTCCCCCTCTAC
389 GCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC-GTCGGGTCCCCCTCTAC
* * * * ** *
13962659 GTGCTACCGATCCTGCTACTGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGT
453 GTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGT
* * *
13962724 ATGTCTAAGCCAACTGACGAAACGAACGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATG
518 ATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATG
* *
13962789 CGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAA
583 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
13962854 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
648 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
13962919 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
713 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* *
13962984 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATCTTTT-TTGGCATGC
778 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGC
*
13963048 ACAAAACAATTTC-GCTAAAAACTCGAAGTGTACA
842 ACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACA
* *
13963082 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGTCAGCAAA
1 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
13963147 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGT
66 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* **
13963212 CCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCG
131 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCG
* * *
13963277 ATCGCTGGAACCCAATTGTCGTCGATCAGGTTCTCTGTCGATGCTCCAACGATGGTGTCCCGGCG
196 A----T------C-A---TCG--G-TCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGGCG
* * ** **
13963342 AAGAAAAATGCGACACCAGCACAAGCTTGAGCCCAGCATGTGCTGCTACAACCCTCGGTCTGGTC
243 AAGAAAAATGCG-CACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
* ** * * ** *
13963407 TGATCTTGGACTGGGAATGAACTCATTTTGCTTAGTCCAGGAATGAACTTCGTATGCCTAAGTCA
307 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * ** **
13963472 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGGCAAAGGGGCGGGATGCGTAACCCTTGG-TCC
372 ACCCAAGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT-C
*** *** * ** * * * * ** *
13963536 GATCTAATCTTACACTGGGAATGAACT-CTG-T-ATGCATA-AGCCAA-CCACGAAACGAG--CG
436 G-TCGGGTCCCCCTCTACG--TG--CTGCCGATCCTGC-TACCG-CAACCCTCGATCCG-GTCCA
** * * * * * * * **
13963594 GGC--GGAC-GGG--TGGA--C-G--GGCACTACGCCGACC-A-GAGA-G-ACTGG-ATGC--GC
493 ATCTTAGACTGGGAATGAACTCTGTATGC-CTAAGCCAACCGACGAAACGAACGGGCGGGCGGGC
** * * * * ****
13963642 A--A-GCC-G-T---G-GA-TTGAT-----AG-GGTGG-TAG-GAGGGT-TTAGGCACATCTT--
557 ACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT-TTAG
* * * *** *** ** **
13963686 -CATAT-TTC-TA---CGTGCCAATCCCATTTTTATGGCT-T--CTAAATTCA-T-A--CAATGG
621 GCACATCTTCATATTTC-TG-C-ATGCCAATGCCATTTTTATGGCT-TGTAAATTCATACAATGG
* ** *
13963738 TCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTG
682 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
** * ** * *
13963803 AAACTTTTTGTGGTTCGGGATGTTTTAAAATTTTTTCAGCAGGAGTTTTAGCCCCAAACTTGGTA
747 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
13963868 GACGCGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
812 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
13963932 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGATTGGCTACTGGCAGCAAA
1 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
13963997 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
66 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
**
13964062 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTGCACCCCCTCGGCCCCCCC
131 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT-GGCCCCCCC
13964127 GAT
195 GAT
13964130 TGTTGGAACC
Statistics
Matches: 3964, Mismatches: 502, Indels: 297
0.83 0.11 0.06
Matches are distributed among these distances:
847 1 0.00
849 9 0.00
850 349 0.09
851 10 0.00
852 1 0.00
853 3 0.00
854 4 0.00
855 2 0.00
856 11 0.00
857 3 0.00
858 4 0.00
860 5 0.00
861 7 0.00
862 2 0.00
863 4 0.00
864 2 0.00
869 5 0.00
870 253 0.06
871 235 0.06
872 1 0.00
874 1 0.00
875 37 0.01
876 243 0.06
877 349 0.09
878 422 0.11
879 276 0.07
880 8 0.00
881 4 0.00
882 7 0.00
883 3 0.00
884 5 0.00
885 4 0.00
886 9 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 5 0.00
891 1 0.00
892 8 0.00
893 3 0.00
894 6 0.00
895 209 0.05
896 15 0.00
897 10 0.00
898 3 0.00
899 271 0.07
900 203 0.05
901 261 0.07
902 49 0.01
903 315 0.08
904 50 0.01
905 265 0.07
909 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCG
ATCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGGCGAAGAAAAATGCGCACCAG
CACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGC
GGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGTCGGGTCCCCCTCTACGTG
CTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATG
CCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACA
Found at i:13965079 original size:26 final size:26
Alignment explanation
Indices: 13965050--13965102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13965040 CCGGTCCAAT
* *
13965050 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACACCGTATG
13965076 CTTAGACTGGCAATGAACACCGTATG
1 CTTAGACTGGCAATGAACACCGTATG
13965102 C
1 C
13965103 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACACCGTATG
Found at i:13966841 original size:26 final size:26
Alignment explanation
Indices: 13966805--13966857 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13966795 CTAGTCCAAT
13966805 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
13966831 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13966857 C
1 C
13966858 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13967719 original size:889 final size:888
Alignment explanation
Indices: 13964406--13968127 Score: 4767
Period size: 889 Copynumber: 4.2 Consensus size: 888
13964396 GCAACAACCC
* *
13964406 TCAGTCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACAT
1 TCAG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
13964471 ATTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGC
65 CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
13964536 CTTCACGTGAAGTTTCATGGCAAAACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTG
130 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT-
* * * *
13964601 A-GGTTTGAGATTTTTTAAAATTTGTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATC
194 ACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
* * * *
13964665 CTTGTATTTTTGTTGGCATGCCCAAAAACATTCAGCTAAAAAATCGAAATGTACAAGATTTTGTG
259 CTTGTATTTTTGTTGGCATG-CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
13964730 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAAT
323 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* **
13964795 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
388 CTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
13964860 GGACAAGTTCCAGCACCCATCGCACACCATGTGCGCACACCACCCCGACCCCCCCGATCACCGGA
453 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGA-CCCCCCGATCACCGGA
* * *
13964925 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAAT
517 ACCCCAATGCCGCCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
** * * * * * *
13964990 GTGGCCCCCGCAGATGCCCGAGCCCAGTATGTGCTGTCGCAACCTTCGGTCCGGTCCAATCTTAG
581 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAG
* *
13965055 ACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACACCGTATGCCTAAGTCAACCCATGAA
646 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * *
13965120 ACGAGCGTGCGGGCGCTCAGCCGGCCAGGGGGGCGGTATGCGCAAGTCGGGGATCAGTCGGGTCC
711 ACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCC
* * *
13965185 CCCTCTGCGTGCTGCTGCAA-CC--CT--CG--A--TT--T-GGTCCGATCTTAGACTAGGAATG
776 CCCTCTACGTGCT-AT-CAATCCTGCTACCGCAACCTTGGTCGGTCTGATCTTAGACTAGGAATG
* ** * * * *
13965238 AACTCCATATGCCTAAGGTAACCAATGAAATGA-GCGGGCGGGCGCTACG
839 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTACG
* * * * *
13965287 TCAACCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACCCATC
1 TCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
13965352 TTCATATTTCTGTGTGCCAATGCCGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
** * * *
13965417 TTCACGTGAAGTTTCATTACAAGACGACTTGTTTTCTATTTTTTACGATTTTTAAAACTTTTTAC
131 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAC
* * *
13965482 GATTC-AGGATTTTTTAAAAATTTTTTTAGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGAT
196 GGTTCGA-GATTTTTT-AAAATTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
* * * *
13965546 CCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGGTAAAAACTAGAAGTGTGCAAGATTTTGT
258 CCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
13965611 GACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAA
322 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * * *
13965676 TATCAAA-AGCTTTTTAAGCGGGTGTGAGTTCTCAAGGTTTCATGAGGAATAGGGGGCCAATATA
387 TCTCAAATA-CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
**
13965740 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCACCCG-CCCCCCGATCGTC
451 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCC-CCCGACCCCCCGATCACC
* * * **
13965804 GGAACCCCAATGCCGTCGGTC-GGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAA
514 GGAACCCCAATGCCGCCGGTCAGGTTCTC-CACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* *
13965868 AATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT---T---G----ATC-
578 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCT
13965922 ----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
643 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
* * * * * *
13965972 GAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCCGCGATCGGTCGGG
708 GAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGG
** ** * * * *
13966037 TCCCCCTCTGTGTGCTGCCAATCTTGCTACTGCAACCCTTGGTTGGGTCTGATCTTAGACTGGGA
773 TCCCCCTCTACGTGCTATCAATCCTGCTACCGCAA-CCTTGG-TCGGTCTGATCTTAGACTAGGA
*
13966102 ATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCTGACGGGCGGGCAGGCACTACG
836 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--G-CGGGC--G--GGCACTACG
* * *
13966162 ACGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 TCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
13966227 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
13966292 TTCACGTGAAGTTTCATGGCAAGAC-AGCTCGTTTTCTATTTTTCATGATTTGTGAAACTTTTTA
131 TTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTA
* * * * *
13966356 TGGTTCAAGATTTTTTAAACTTTTTTTGGAGGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
195 CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
13966421 TTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
260 TTGTATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
13966486 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGACAGCAAACCTGTAAAATC
324 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *** **
13966551 TCAAATGCTCTTTAAGGGGACATGAGTTCTCAAATTTTGATGAGGGATAGGGGGCCAATATAAGG
389 TCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * **
13966616 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAAACCCCCGATCGTCGGAA
454 GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCG-ACCCCCCGATCACCGGAA
* *
13966681 CCCCAACGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAAT
518 CCCCAATGCCGCCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAAT
* * * * **
13966745 ATGGCACCAGCACATGCCCGAACCTAGTATGTGCT-CCTGCAACCCTCGGTCTAGTCCAATCTTA
581 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCCGGTCCAATCTTA
* *
13966809 GACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGA
645 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * *
13966874 AACCAACGTCCGGGCGCTCAGCTAGCTAGAGGGGCGGGATGCGCAAGCCGGGGATC-GATCGGGT
710 AACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAG-TCGGGT
** * *
13966938 CCCCCTCTACGTGCTATCAATCCTATTACCGCAACCTTCAGTCCGGTCTGATCTTAGACTGGGAA
774 CCCCCTCTACGTGCTATCAATCCTGCTACCGCAACCTT-GGT-CGGTCTGATCTTAGACTAGGAA
* * *
13967003 TGAACGCTGTATGCCTAAGCCAACTGACGAAACGA-GCGGGCGGGCACTACG
837 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTACG
* ** *
13967054 CCAGCCAGAGAGACGGGATGCGCAAGTTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 TCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* **
13967119 TTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
** *
13967184 TTCACGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTTTTCATGATTTTCAAAAC-TTTTAC
131 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAC
* * * *
13967248 GGTTCGAGATTTTTTAAAATTTTTTTGGAAGCAGTTTTGGCCCCAAACCTGTTAGACATGATCCC
196 GGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
* * *
13967313 TGTATTTTTGTTGGCATGCACAAAAAATTCAACTAAAAACTCGAACTGTACAAGATTTTGTGACC
261 TGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
13967378 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
13967443 AAATACTCTTT-AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGCAG-AAATATAAGGG
391 AAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG-GGCCAATATAAGGG
* * *
13967506 CCAAGTACCAGTACCAATCACACATCATGTCCGCACACACCCCCCGACCCCCCGATCACCGGAAC
455 CCAAGTACCAGCACCCATCACACATCATGTGCGCACAC-CCCCCCGACCCCCCGATCACCGGAAC
* * * * *
13967571 CCCAATGTCGCCGATCAAGTTCTCCATCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGC
519 CCCAATGCCGCCGGTCAGGTTCTCCA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATAC
* * ** * * * *
13967636 AGCACTAGCACATGCTTGAGCCAAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGAC
583 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGAC
* *
13967701 TGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAGCCATGAAAC
648 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * * * *
13967766 GGGCGTGCGGGCGCTCAGCAAGCCAGAGGGGTGGGATGCGTAAGCTGGGGATCAGCCGGGTCCCC
713 GAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCC
* ** * * * *
13967831 CTCTACGTGCTATCGATCCTGCCGCTGCAACCCTCGGTCTGATCTGATCTTAGACAAGGAATGAA
778 CTCTACGTGCTATCAATCCTGCTACCGCAA-CCTTGGTC-GGTCTGATCTTAGACTAGGAATGAA
13967896 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCAATCGGGCGGGCGGGCACTACG
841 CTCCGTATGCCTAAGCCAACCGACGAAAC--G--A---GGCGGGCGGGCACTACG
* * *
13967951 TCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATC
1 TCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** *
13968016 TACATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCC
66 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
13968081 TTTACGTGATGTTTCCTGGCAAGACGACTCATTCTCTATTTTTCATG
131 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
13968128 CCACAACCCT
Statistics
Matches: 2474, Mismatches: 280, Indels: 158
0.85 0.10 0.05
Matches are distributed among these distances:
853 3 0.00
854 1 0.00
855 111 0.04
856 4 0.00
857 4 0.00
858 1 0.00
860 2 0.00
863 3 0.00
866 2 0.00
867 47 0.02
870 1 0.00
871 12 0.00
872 4 0.00
873 280 0.11
874 89 0.04
875 198 0.08
876 1 0.00
877 1 0.00
878 1 0.00
879 2 0.00
880 183 0.07
881 90 0.04
882 273 0.11
883 3 0.00
884 7 0.00
888 2 0.00
889 385 0.16
890 128 0.05
891 82 0.03
892 182 0.07
893 2 0.00
894 1 0.00
896 5 0.00
897 177 0.07
898 4 0.00
899 8 0.00
900 175 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
TCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAC
GGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
TGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCGATCACCGGAACCC
CAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTC
TACGTGCTATCAATCCTGCTACCGCAACCTTGGTCGGTCTGATCTTAGACTAGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTACG
Found at i:13967723 original size:26 final size:26
Alignment explanation
Indices: 13967694--13967746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13967684 CCGGTCCGAT
13967694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13967720 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13967746 C
1 C
13967747 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13968533 original size:458 final size:458
Alignment explanation
Indices: 13967674--13968581 Score: 1282
Period size: 458 Copynumber: 2.0 Consensus size: 458
13967664 GTGCTGTCGT
* *
13967674 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACT
* * * *
13967739 CCGTATGCCTAAGTCAAGCCATGAAACGGGCGTGCGGGCGCTCAGCAAGCCAGAGGGGTGGGATG
66 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCAAGCCAGAGGGGCGGGACG
** * * *
13967804 CGTAAGCTGGGGATCAGCCGGGTCCCCCTCTACGTGCTATCGATCCTGCCGCTGCAACCCTCGGT
131 CACAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTATCGATCCTGCAGCTGCAACCCTCGCT
* * *
13967869 CTGATCTGATCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAATCG
196 CAGATCTGACCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCG
* * *
13967934 GGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
261 GGCGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
* * * * *
13967999 GTGGGTTTATGCACATCTACATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
326 GTGGGTTCAAGCACATCTACATATTTCAGCATGCCAAAGACATTTTTATGGCTTGTAAATTCATA
* *
13968064 CAATCGTCCCTTAAGCCTTTACGTGATGTTTCCTGGCAAGACGACTCATTCTCTATTTTTCATGC
391 CAATCGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCATTCTCTATTTTTCATGC
13968129 CAC
456 CAC
* * * *
13968132 AACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATCCTTAGACTGGTAATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACT
* * * *
13968197 CTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCTA-CCAGAGGTGCGGGAC
66 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CAAGCCAGAGGGGCGGGAC
* * * * * * *
13968261 GCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTATC-GCAACTCTCA
130 GCACAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTATCGATCCTGC-AGCTGCAACCCTC-
** * * * **
13968325 GCTCAG-TCTGACCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCTAACCGATGAAACGAGCGG
193 GCTCAGATCTGACCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAA
* *
13968389 GCGGGCGGGCGGGTACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG
258 GCGGGCGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG
* **
13968454 TAGGTGGGTTCAAGCACATCTTCATATTTCAGTGTGCCAAAGACATTTTTATGGCTTGTAAATTC
323 TAGGTGGGTTCAAGCACATCTACATATTTCAGCATGCCAAAGACATTTTTATGGCTTGTAAATTC
* * *
13968519 ATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
388 ATACAATCGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCATTCTCTATTTTT
13968582 TAGGATTTTT
Statistics
Matches: 393, Mismatches: 54, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
458 386 0.98
459 7 0.02
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (458 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCAAGCCAGAGGGGCGGGACG
CACAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTATCGATCCTGCAGCTGCAACCCTCGCT
CAGATCTGACCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCG
GGCGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
GTGGGTTCAAGCACATCTACATATTTCAGCATGCCAAAGACATTTTTATGGCTTGTAAATTCATA
CAATCGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCATTCTCTATTTTTCATGC
CAC
Found at i:13969067 original size:26 final size:26
Alignment explanation
Indices: 13969038--13969090 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13969028 CCGGTCCGAT
13969038 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
13969064 CTTAGACTGGTAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13969090 C
1 C
13969091 CAAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13969979 original size:26 final size:26
Alignment explanation
Indices: 13969950--13970002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13969940 CCGGTCCGAT
*
13969950 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
13969976 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
13970002 C
1 C
13970003 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:13970566 original size:895 final size:896
Alignment explanation
Indices: 13968128--13971833 Score: 4623
Period size: 895 Copynumber: 4.1 Consensus size: 896
13968118 ATTTTTCATG
* * * *
13968128 CCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATCCTTAGACTGGTAATG
1 CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG-AATG
* * * * ** * *
13968193 AACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCTACCAGAGGTGCGG
65 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAG
* * * * * * *
13968258 GACGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTATCGCAACTCT
130 GATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCAGCCGATCCTGCTACCGCAACCCT
* * * * *
13968323 CAGCT-CAGTCTGACCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCTAACCGATGAAACGAGC
195 CAGCTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
13968387 GGGCGGGCGGGCGGGTACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
260 GGACGGGCGGGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * *
13968452 GGTAGGTGGGTTCAAGCACATCTTCATATTTCAGTGTGCCAAAGACATTTTTATGGCTTGTAAAT
321 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
* **
13968517 TCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
386 TCATACAATGGTCCCTTAAGCCTTCACCTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
13968582 TAGGATTTTTGAAACTTTTTGCAGTTCAGGATTTTGTAAAATTTTTTCGAAAGGAGTTTTGGCCC
451 CAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* * *
13968647 CAAACTTGGTAGACACGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
516 CAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC
* *
13968712 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
581 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
13968777 TGGCAGCAAACCTGTAAAATCTCTAATGCTCTTTAAGGAGGTGTGAGTTCTAGAGGTTTGATGAG
646 TGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
13968842 GGATAGGGGGCCAATATAAGGGCCAAGTACCAG-------CAC-C--CA--T-CGCACA-CCCCT
711 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCT
* * *
13968893 -CGGCCCCCCCGATCGC-CGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGA
776 CCGG-CCCCCCGATC-CTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGTGA
** *
13968956 TGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTA
839 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* **
13969014 CCAAAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATG
1 CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG-AATG
* * * * * *
13969079 AATTTCGTATGCCAAAATCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAG
65 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAG
** * * * * *
13969144 GATGCGTAAGCCGGGGATCGGCCAGGTCCCCCACTACGTGCTA-CCAATCCTGCTACCTCAACCC
130 GATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC-AGCCGATCCTGCTACCGCAACCC
* * *
13969208 TCAG-TCCGGTCTAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCGACGAAACAAG
194 TCAGCTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-
* *
13969272 CGGGTGGATGGGCGGACGGGCGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
255 C-----GA---GCGGA----CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * * *
13969337 GGATCGATAGTGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTATGTGCCAGTGCCATTTTT
308 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
* *
13969402 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAATTTCATGGCAAGACGACTC
373 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAATTTCATGGCAAGACGACTC
* * * * * *
13969467 CTTTTCTATTTTTCAAAATTTTAGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAA
438 GTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAA
* * * * *
13969532 TGATTTTTGGCCCCAAACATGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCATAAAAAAATT
503 GGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATT
13969597 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
568 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
13969662 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTATGAGTTCTC
633 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTC
*
13969727 GTGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCACACATCATGT
698 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
* * *
13969791 GCGCACACCCCCTCCGGCCGCCCTGATCACT-AGAACCCCAATGCCGTCGGTTAGGTTCTCCGGT
763 GCGCACACCCCCTCCGGCC-CCCCGATC-CTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGAT
* * * *
13969855 GACGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGTAT
826 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
13969920 GTGCTG
891 GTGCTA
*
13969926 CCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATG
1 CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GAATG
** *
13969991 AACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGG
65 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAG
** * * *
13970056 GATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCAGCCTATCTTGCTACCACAACCCT
130 GATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCAGCCGATCCTGCTACCGCAACCCT
* * * *
13970121 CAGCT-TGGTCCGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGAGT
195 CAGCTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * *
13970185 GGACGGGCGGGCACTACACCGGCCAGAGAGA-GGGATGTGCAAGCCGTGAATCGATAGGATGGTA
260 GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
13970249 GGTAGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
325 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13970314 ACAATTGTCCCTTAAGCCTTCACCTGAAATTTCATGGCAAGACGACTCGTTTTTTATTTTTCATG
390 ACAATGGTCCCTTAAGCCTTCACCTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAG
* ** * *
13970379 ATTTTGGATCCTTTTTGCGGTTC-GAGATTTTTTAAAAGTTTTTT-GGAAGGATTTTTGGCCCCA
455 ATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCA
** *
13970442 AACATGGTAGACATGATCCTTGTACTTTTT-TTGGCACACATAAAAAAATTCAGGTAAAAACTCA
518 AACATGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCA
* *
13970506 AAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGGCACTTTAATGGCTACT
582 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
13970571 GGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGG
647 GGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * * *
13970636 GATAGGGGGCCAATATAACGGCTAAGTACCAGCACCCATCACACATCATGTACGCACACCACTTC
712 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTC
* * * * * * **
13970701 TGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAAGCTTCGGCAATGG
777 CGGCCCCCCGATCCTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGTGATGG
* * *
13970766 TGCCCCGACGAAGAAAAATACGGCACCAGCACGTGCCCGAGCCTAGCATGTGCTA
842 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * *
13970821 TCGCAA---------C---CC--TC--AGTCT-GG--T----T-CG-AT-CTTAGACTGGGAATG
1 CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATG
*
13970860 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCAG
65 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAG
** * * * * * * *
13970925 GATGGGCAAGCTGGGGGTCGATCGGGTGCCCCTCTACGTGCTGCCGATCCTGCTGCTGCAACCCT
130 GATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCAGCCGATCCTGCTACCGCAACCCT
* * *
13970990 C-GGTCCGGTCTGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC
195 CAGCTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
** * * * *
13971054 GGGTGGGCGAGCACTACGCCGGCCAAAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTA
260 GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
13971119 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
325 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13971184 ACAATGGTCCCTTAAGCCTTCATCTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCACG
390 ACAATGGTCCCTTAAGCCTTCACCTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAG
* * *
13971248 ATTTTTGAAACTTTTTGCGGTTCAGGA-TTTTTAAAATTTTTTTGAAAGGCGTTTTGGTCCCAAA
455 ATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
* * * *
13971312 CTTGGTAGAGATGATCCTTATATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAG
520 CATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAG
* *
13971377 TGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGC
585 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * **
13971441 AGCAAACCTGTAAAATCTCAAAT-CCTCTCTAAGGGGCTGTGAGTTTTTGATTTTTGATGAGGTA
650 AGCAAACCTGTAAAATCTCAAATGCC-CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT---G--
* *
13971505 TAGGGGGCCAATATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
709 -A--GGG---ATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* * * * * *
13971570 ACACCCCC-CCGACCCCCTCGATCGTCAAAACCCCAATGCCGTCGGTCAAGTTCTCCGATCATGT
767 ACACCCCCTCCGGCCCCC-CGATCCTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGC
* * * * *
13971634 TCTGGTGATGGTGCCTCAACGAAGAAAAATGTGGCACCAGCGCATGCCCGAGCCCAGCATGTGCT
831 TCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
13971699 A
896 A
* * * * *
13971700 TCGA-AACCCTCGGTCTGATCCAATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
1 -CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAAT
* * *
13971764 GAGCTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCA
64 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCA
13971829 GGATG
129 GGATG
13971834 GGCAAGCCAG
Statistics
Matches: 2435, Mismatches: 295, Indels: 161
0.84 0.10 0.06
Matches are distributed among these distances:
866 1 0.00
867 95 0.04
868 104 0.04
869 246 0.10
870 136 0.06
871 2 0.00
872 1 0.00
873 1 0.00
875 3 0.00
876 1 0.00
878 12 0.00
879 152 0.06
881 2 0.00
883 2 0.00
885 1 0.00
886 209 0.09
888 1 0.00
889 2 0.00
890 1 0.00
891 2 0.00
893 1 0.00
894 2 0.00
895 497 0.20
896 84 0.03
897 13 0.01
898 419 0.17
900 4 0.00
902 10 0.00
903 4 0.00
904 5 0.00
905 81 0.03
907 2 0.00
908 1 0.00
909 3 0.00
910 7 0.00
911 8 0.00
912 318 0.13
913 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGG
ATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCAGCCGATCCTGCTACCGCAACCCTC
AGCTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
GACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACCTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGA
TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
ATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCCGGC
CCCCCGATCCTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
Found at i:13971525 original size:12 final size:12
Alignment explanation
Indices: 13971503--13971539 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
13971493 TTTGATGAGG
13971503 TATAGGGGGCCAA
1 TATA-GGGGCCAA
13971516 TATAGGGGCCAA
1 TATAGGGGCCAA
*
13971528 TATAAGGGCCAA
1 TATAGGGGCCAA
13971540 GTACCAGCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.35, C:0.16, G:0.32, T:0.16
Consensus pattern (12 bp):
TATAGGGGCCAA
Found at i:13971761 original size:26 final size:26
Alignment explanation
Indices: 13971725--13971776 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13971715 TGATCCAATT
13971725 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
13971751 TTAGACTGGGAATGAGCTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13971777 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13979642 original size:841 final size:848
Alignment explanation
Indices: 13977525--13979851 Score: 3320
Period size: 859 Copynumber: 2.7 Consensus size: 848
13977515 ACACCAAGGG
* * *
13977525 TCGGCCAGGTCCCCCTCTACGTGCTACCGATCCTGCTACCCCAACCCTTAGTCTGGTCTGATCTT
1 TCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTT
* * * *
13977590 AGACTGGGAATGAATTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGTGGG-C---AGGCAC
66 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTCGGGGGGCAC
* * * * *
13977651 TATGCCTGCCAGAGATATGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
131 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
13977716 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTA
196 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTA
** *
13977781 AGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTTATGATTTTCAAAACTTT
261 AGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
* * * ** *
13977846 TTACGATTTGGGATTTTTTAAATTTTTTCAAAAGGAGTTTT-GGCAACAAACTTGGTAGACATGA
326 TTACGGTTCGAGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGGC-CCAAACTTGGTAGACATGA
* * *
13977910 TCCTTGTATTTTCGTTGGCATGCACAAAAAAAATCAGCTAAAAATTCGAAGTGTACAAGATTTTG
390 TCCTTATATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
13977975 TGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAA
455 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
13978040 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
520 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
*
13978105 AGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACACCCCCACCGGCGCACCCGATCACC
585 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCGCA--CGATCACC
* *
13978170 GGAACCCCAATGTCGTCGGTCAGGTTCTCTGGTCATGGTGCCCCGATGAAGAAAAATGCAGCACC
646 GG----CCAATGTCGTC-G-CA-G---TATGG-CATGGTGCCCCGACGAAGAAAAATGCAGCACC
* * *
13978235 AGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAA
700 AGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAA
* *
13978300 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGTGCTCAACCGGCCAGAGGGGC
765 TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTACGGGCGCTCAACCGGCCAGAGGGGC
*
13978365 GGGATGCTCAACCCGGGGA
830 GGGATGCTCAACCCGAGGA
* * * * **
13978384 TCGACCTGGACCCCCTCTACGTGCTGCCGGTCCTGCTACCACAACCCTCAGTCTGGTCCAATCTT
1 TCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTT
*
13978449 AGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGACGAAACGAGCGGGCGGG-C---GGGCAC
66 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTCGGGGGGCAC
* * *
13978510 CACGCCGGCCAGAGAGAC-GGATTGCGCAAGTCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGC
131 TACGCCGGCCAGAGAGACGGGA-TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
13978574 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCCT
195 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTT
* * * *
13978639 AAGCCTTCACATGAAGTTTCATGGCAAG-GCGACTCGTTTTCTGTTTTTCACGATTTTCAAAGCT
260 AAGCCTTCACGTGAAGTTTCATGGCAAGAG-GACTCGTTTTCTATTTTTCATGATTTTCAAAACT
* * *
13978703 TTTTACGGTTCGAGATTTTTTAAATTTTTTTGGAAGGACTTTTGGCCCCAAACTTGGTAGACATG
324 TTTTACGGTTCGAGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACATG
* * *
13978768 ATCTTTCTATTTTTGTTAGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTT
389 ATCCTTATATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
13978833 GTGACCATTCGAAAAAAGTGTCCTCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAA
454 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
13978898 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-TAATAT
519 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
13978962 AAGGGCCACGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCGGC-CA-GATTCTCTGG
584 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCGCACGA-TCACCGG
* * **
13979025 -CGATG-C-TC-C-G-AT-G-ATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCAA
648 CCAATGTCGTCGCAGTATGGCATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCAA
* *
13979082 GCCCAGCATGTGCTGCCGCAACCCTC-GATCTAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
713 GCCCAGCATGTGCTACCGCAACCCTCAG-TCTAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * ** *
13979146 GCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAGTCGGCCAGAGGGGCGGGATGC-CAAG
777 GCCTAAGTCAACCCACAAAACGAACGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCTCAAC
13979210 CCGAGGA
842 CCGAGGA
** * * * * *
13979217 TCGGCCAGGTCCAACTCTACGTGCTGTCGATCTTGCTGCCGCAACCCTCAGTCTGGTGTGATCTT
1 TCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTT
* *
13979282 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAATC-AAACGAGCGGGCGGGCGGTCGGGTG
66 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGGC--G-GGTCGGG-G
* * * *
13979346 GGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCAATAGGGTGATAGGTGGGTTT
126 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
13979411 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
191 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTC
13979476 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTCAAA
256 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTCAAA
**
13979541 AAGTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGA
321 ACTTTTTACGGTTCGAGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGA
* * * *
13979606 CATGAACCATATATTTTTTTTGGCATGCA-TAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
385 CATGATCCTTATATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
* *
13979670 TTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCACACCT
450 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
13979735 GTAAAATTTCAAATGCTCATTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
515 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
13979800 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
580 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
13979852 CGGACCCCCC
Statistics
Matches: 1321, Mismatches: 129, Indels: 53
0.88 0.09 0.04
Matches are distributed among these distances:
833 108 0.08
834 151 0.11
835 1 0.00
836 3 0.00
837 2 0.00
841 353 0.27
842 115 0.09
843 1 0.00
846 2 0.00
847 1 0.00
848 4 0.00
852 2 0.00
853 5 0.00
855 2 0.00
856 5 0.00
857 4 0.00
858 47 0.04
859 513 0.39
860 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (848 bp):
TCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTCGGGGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
TTACGGTTCGAGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACATGAT
CCTTATATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCGCACGATCACCGGCCA
ATGTCGTCGCAGTATGGCATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCC
CAGCATGTGCTACCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACAAAACGAACGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCTCAACCCGA
GGA
Found at i:13980581 original size:24 final size:22
Alignment explanation
Indices: 13980529--13980577 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
13980519 GCCAAGTACA
13980529 AGCACCCATCGCACATCATGCG
1 AGCACCCATCGCACATCATGCG
*
13980551 AGCACCCATCGCGCATCATGCG
1 AGCACCCATCGCACATCATGCG
*
13980573 CGCAC
1 AGCAC
13980578 ACCCCCTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.24, C:0.43, G:0.20, T:0.12
Consensus pattern (22 bp):
AGCACCCATCGCACATCATGCG
Found at i:13980764 original size:26 final size:26
Alignment explanation
Indices: 13980728--13980780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13980718 CCGGTCCGAT
13980728 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
*
13980754 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
13980780 C
1 C
13980781 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:13981665 original size:26 final size:26
Alignment explanation
Indices: 13981636--13981688 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13981626 CCGATCCGAT
13981636 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
13981662 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13981688 C
1 C
13981689 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13982082 original size:903 final size:896
Alignment explanation
Indices: 13979976--13985954 Score: 7563
Period size: 903 Copynumber: 6.7 Consensus size: 896
13979966 TGTGCTGCCG
* *
13979976 CAACCCTCTGTCCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCAGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
*
13980040 AACGA----GCGAGCGGGCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
65 AACGAGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * * *
13980100 GATAGAGTGGTAGGTGGGTTCATGCACATCATCATATTTCTGCATGCCAATGCCTTTTTTATGGC
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
13980165 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATC-ACACATTT
194 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CGACTCGTTT
* * * * *
13980229 TCTATTTTTCACGATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTCGAAAGGAG
258 TCTATTTTTCATGATTTTTGAAACTTTTTACGCTTCGAGATTTTTTAAAATTTTTTGGAAAGGAG
*
13980294 TTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAACAAA-TCAG
323 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA-AAATTCAG
* * *
13980358 CTAAAAACTCAAAGTGTACAAGATTTTGTCACCATTCGAAAAAAGTGTCCCCGTTTCAGACACTT
386 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
13980423 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGGTCGTGACTTCTCAA
451 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGA
*
13980487 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGCGA
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT----
* *
13980552 GCACCCATCGCGCATCATGCGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGTCGTC
576 G------T---GCA-CA------CAC-CCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * * *
13980617 GGACAGGTTCTCCGATGATGCTCCGGCGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACA
623 GGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * *
13980682 TGCCCGAGCCCAGTATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACT
688 TGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT-CTGTCCGATCTTAGACTGGGAATGAACT
* * * *
13980747 CCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAATCGAGCATGCGGGC
752 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGG-
* * * * * * *
13980812 T-CTCAGCCGGACAGAGGGGCAGGATGCGTAAGCCGAGGATTGGTCGGGTCCACCTCTGTGTGCT
816 TGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGCGTGCT
* *
13980876 GTCAATCTTGCTACCA
881 GCCAATCCTGCTACCA
* * *
13980892 CAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAAGTCCATATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
13980957 ACGAGTGGGCGGGCAAACGGGCGGGCACTACGCCT-GCAAGAGAGACGGGATGCGCAAGCCGTGG
66 ACGAGCGGGCGGG----CGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGG
13981021 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
126 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
13981086 GGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGT
191 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
13981151 TTTCTATTTTTCATGATTTTTGAAACTTTTTATGCTTCGAGATTTTTTAAAATTTTTTGGAAAGG
256 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGCTTCGAGATTTTTTAAAATTTTTTGGAAAGG
* * *
13981216 TGTTTTGGCCCCAAACATGGTAAACGTGATCCTTGTATGTTTTTTGGCATGCACAAAAAAATTCA
321 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTTTGGCATGCACAAAAAAATTCA
* * *
13981281 ACTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
385 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* ** *
13981346 TTAATGGCTACTGGCAGCAAACCTGTAACATCTCAAATGCTCTTTAAGCAGGTGTGAGTTCTCCA
450 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
** * * *
13981411 ACTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTAC
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
13981476 ACACACCCCCCCGGCCCACCCGTTCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTTCGATGTTG
580 ACACA-CCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATG
* *
13981541 CTCCGACGATGGTGCCCCGACAAAG-AAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGC
643 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
13981605 TGCTGTAACCCTCGGTCCGATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACT
708 TGCCGTAACCCTCGGT-C--T--G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
13981670 AGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGTGCTCAGCCAGCCAGA
767 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGA
** * * * * *
13981735 AAGGCGGGATGCGCAAGTCAGGGATTGGTCGAGTCCCCCTTTGCGTGCTACCGATCCTGCTACCA
832 GGGGCGGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCA
** * * *
13981800 CAACCCTTGGTCTAGTTCGATC-TAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 CAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
13981864 ACGAGCGGGCGGGCGGGCGGGCGCTACGCTGGGCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
13981929 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
13981994 GTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGATGACTCGTTTTTT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * * * *
13982059 ATTTTTCACGATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTAAACTTTTTTCGG-ATGGAGT
261 ATTTTTCATGATTTTTGAAACTTTTTACGCTTCGA-GATTTTTTAAAATTTTTT-GGAAAGGAGT
* * *
13982122 TTTGGCCCCAAACTTGGTAGACATGATCCTTGAATTTTTTTTGGCATGCATAAAAAAATTCAGCT
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCT
** * * *
13982187 AAAAACTGGAAGTGTACGAGATTTTGTGACCATATGAAAAAAGTGTCACCATTTCAGACACTTTA
388 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
13982252 ATGGCTACTGGCAGCAACCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* ** *
13982317 TTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA
* * *
13982382 CACCCCCCGGCCCTCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTTC
583 CACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC
* * * * * * * * *
13982447 -AGGGATGGTGCCCTGACGAAGAAAAATTCGACACCAGCATATCCCCGAGCTCAGGATGTGCTAC
647 GA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * ** *
13982511 CGCAACCCTCGATCCAGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
711 CGTAACCCTCGGT-CTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * **
13982576 ACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGTAGG
775 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCGGG
* * * * * **
13982641 AAGCACAAGTCGGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGTCA
840 ATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCA
* * * * *
13982698 CAACCCTCAGTCCGGTTCAATCTCAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
13982763 ACGAACGGGCGGGCAGGCGGGCGGGCACTACGCCT-GCAAGAGAGACGGGATGCACAAGCCGCGG
66 ACG-A---GCGGGCGGGCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
13982827 ATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTCATTTTTAT
126 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
13982892 GGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
191 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
13982957 TTTCTATTTGTCTTGATTTTTGAAACTTTTTGCGCTTCGAGATTTTTTAAAATTTTTTCGG-AAG
256 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGCTTCGAGATTTTTTAAAATTTTTT-GGAAAG
* *
13983021 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTC
320 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTC
*
13983086 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
384 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
13983151 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
449 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
13983216 AGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTG
514 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * * *
13983281 CACACACCCCCCGGCCCACCCGTTCGTCGGAACCCCAATGCCGTAGGCCAGGTTCTTCGATGTTA
579 CACACACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATG
* * ** *
13983346 CTCTGGCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
643 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** *
13983411 TGCCACAA--CTC--TC-G---G----T---CT-GG--T----T-TG-AT-CTTAGACTGGGAAT
708 TGCCGTAACCCTCGGTCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * ** *
13983451 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGATGCTTGGCCGGCTAGAGGGGCG
773 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCG
* * * * *
13983516 GGATACGCAAGACGGGGATCGGTC-GGTCCCCCTCTGCGTGCGTACTACTGATCCTGCTACCA
838 GGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGCGTGC-TGC--C-AATCCTGCTACCA
* *
13983578 CAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
13983643 ACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGATGGGATGTGCAAGTCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
13983708 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
13983773 GTAAATTCATACAATGG-CCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
196 GTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
13983837 TATTTTTCATGATTTTCGAAACATTTTAC-CGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGT
260 TATTTTTCATGATTTTTGAAACTTTTTACGC-TTCGAGATTTTTTAAAATTTTTTGGAAAGGAGT
* * *
13983901 TTTGGCCCCAAACTTGGTAGACGTCATCCTTGTCTTTTTGTTGGCATGCACAAAACAATTCAGCT
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCT
** * * *
13983966 AAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTTAGACACTCTA
388 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
13984031 ATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
13984096 TTGATGAGGGATAGGGGGCCAATATAAGGGCCTACTACCAGCACCCATCGCACATCATGTGCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA
* ** * * *
13984161 CACCCCCCTGGCTGCCCCGATCACCGGAACCCCATTGTCGCCGGTCAAGTTCTCC------G---
583 CACCCCCC-GGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTC
** * * * *
13984217 -G-CGATGGTGCCTTGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATTTGCTGC
646 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
** * * *
13984280 CACATCCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGA
711 CGTAACCCTCGGTCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
13984345 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGCG
775 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCGGG
* * * **
13984410 ATGGGCAAGCCGGGGATTGG-CTGGGTCCCCCTCTGCGTGCTGCCAATCTTGGC-ACTG
840 ATGCGCAAGTCGGGGATTGGTC-GGGTCCCCCTCTGCGTGCTGCCAATCCT-GCTACCA
* * * *
13984467 CAACCCTCAGTCCGG-TCTAATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGA
1 CAACCCTCAGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * * *
13984531 AAAGAGTGGGTGGGCGGGCAGACACTACGCCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCG
65 AACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * ** ** *
13984596 ATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGGAATTTTTGTGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * *
13984661 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCGTGGCAAGACGACTCATTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
13984726 TATTTTTCATGATTTTTGAAACTTTTTACGATTC-AGGATTTATTAAAAGTCTTTCGAAAGGAGT
260 TATTTTTCATGATTTTTGAAACTTTTTACGCTTCGA-GATTTTTTAAAATTTTTTGGAAAGGAGT
** * * *
13984790 TTTGGTACCAAACTTGGTGGACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAATTCAGCC
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTGGCATGCACAAAAAAATTCAGCT
* *
13984855 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTA
388 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
13984920 ATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* **
13984985 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGTGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA
* * * * **
13985050 CACCCCCTGGCCCCCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTA
583 CACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG
* * *
13985115 ACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-GCATGTGCTACCA
648 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * *
13985179 TAACCCTCGATCCGGTCCGATATTAGACTGGGACTAAACTCTGTATGCTTAGACTGGGAATGAAC
713 TAACCCTCGGT-CTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
13985244 TCCGTATGCCTCAGGCAACCCACGAAACGAG-AGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGA
777 TCCGTATGCCTAAGTCAACCCACGAAACGAGCA-TGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
** * ** * * * * ****
13985308 TGCATAAATCGGGGA-TCATCCGGGTCCCCTTTTACGTCCTGCCAATCCTGCTGTTG
841 TGCGCAAGTCGGGGATTGGT-CGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCA
** * * * * *
13985364 CAACCCTTGGT-TCGATCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGA
1 CAACCCTCAGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
13985428 ATCGAGCGGACGGGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
65 AACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
13985493 ATAGGGTGGTAGGTGGGTTTTGGCATATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * *
13985558 TGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCAAGGCAAGACAACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
13985623 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTCGG-ATGGAGT
260 TATTTTTCATGATTTTTGAAACTTTTTACGCTTCGAGATTTTTTAAAATTTTTT-GGAAAGGAGT
* * * * *
13985687 TTTGACCACAAACTTGGTAGACGTGATCCTTGTATTCTTATTGGCATGCACAAAACAATTCAGCG
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTTTGGCATGCACAAAAAAATTCAGCT
* *
13985752 AAAAAATCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
388 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
13985817 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * **
13985882 TTGATGAGGGATAGGGGCCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATTATGTGCGTA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA
13985947 CACCCCCC
583 CACCCCCC
13985955 ACTGCGTGCT
Statistics
Matches: 4428, Mismatches: 533, Indels: 223
0.85 0.10 0.04
Matches are distributed among these distances:
866 59 0.01
867 1 0.00
868 3 0.00
870 2 0.00
871 1 0.00
875 6 0.00
876 493 0.11
877 124 0.03
878 3 0.00
879 4 0.00
880 74 0.02
882 2 0.00
883 2 0.00
884 1 0.00
885 1 0.00
886 2 0.00
887 36 0.01
888 5 0.00
889 536 0.12
890 7 0.00
891 3 0.00
892 88 0.02
893 18 0.00
894 1 0.00
896 4 0.00
897 673 0.15
898 213 0.05
899 44 0.01
900 1 0.00
901 4 0.00
902 79 0.02
903 1120 0.25
904 76 0.02
905 1 0.00
907 52 0.01
908 161 0.04
910 2 0.00
911 2 0.00
914 1 0.00
916 62 0.01
917 2 0.00
920 5 0.00
923 4 0.00
924 442 0.10
925 7 0.00
926 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTTGAAACTTTTTACGCTTCGAGATTTTTTAAAATTTTTTGGAAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAC
CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
CCCTCGGTCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGTCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCA
Found at i:13982572 original size:26 final size:26
Alignment explanation
Indices: 13982534--13982586 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13982524 CCAGTTTGAT
13982534 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13982560 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13982586 C
1 C
13982587 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13985237 original size:26 final size:26
Alignment explanation
Indices: 13985201--13985252 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13985191 CGGTCCGATA
* *
13985201 TTAGACTGGGACTAAACTCTGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
*
13985227 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
13985253 CTCAGGCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:13985597 original size:897 final size:898
Alignment explanation
Indices: 13983437--13985954 Score: 3334
Period size: 897 Copynumber: 2.8 Consensus size: 898
13983427 CTGGTTTGAT
* ** **
13983437 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGATGCTTGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
13983502 CGGCTAGAGGGGCGGGATACGCAAGACGGGGATCGGTC-GGTCCCCCTCTGCGTGCGTACTACTG
66 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATC-GTCGGGTCCCCCTCTGCGTGC-TGC--C-A
**
13983566 ATCCTGCTACCACAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
126 ATCCTGCTACCACAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
13983630 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGATGGGATGTGCA
190 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
13983695 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
13983760 ATTTTTATGGCTTGTAAATTCATACAATGG-CCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
13983824 ACGACTCATTTTCTATTTTTCATGATTTTCGAAACATTTTACCG-TTCGAGATTTTTTAAAATTT
384 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA-CGATTCGAGATTTTTTAAAATTT
* *
13983888 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTCTTTTTGTTGGCATGCACA
448 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* ** *
13983953 AAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCAT
513 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
13984018 TTTAGACACTCTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
13984083 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTACTACCAGCACCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * * *
13984148 CATCATGTGCGCACACCCCCCTGGCTGC-CCCGATCACCGGAACCCCATTGTCGCCGGTCAAG-T
708 CATCATGTGCGCACACCCCCC-GGC-CCACCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * *
13984211 -T----C--T-C-C-GGCGATGGTGCCTTGATGAAGAAAAATACGGCACCAGCACATGCCCGAGC
771 CTCCGACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
13984266 CCAACATTTGCTGCCACATCCCTC-AGTCTGATCCGATCTTAGACTGGGAATGAACTCAGTATG
836 CCAGCATGTGCTGCCACAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13984329 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * ** * * * *
13984394 TGGCCAGAGGGGCGCGATGGGCAAGCCGGGGATTGGCTGGGTCCCCCTCTGCGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCAATCC
** * * * *
13984459 TGGC-ACTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCA
130 T-GCTACCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
13984523 ACCGACGAAAAGAGTGGGTGGGCGGGCAGACACTACGCCGACCAGAGAGACGGGATGCGTAAGCC
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * ** **
13984588 GTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGGAATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
13984653 TTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCGTGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
13984718 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC-AGGATTTATTAAAAGTCTTTCG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGA-GATTTTTTAAAATTTTTTCG
** * *
13984782 AAAGGAGTTTTGGTACCAAACTTGGTGGACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAA
453 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
13984847 ATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAG
518 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
13984912 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
13984977 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
13985042 TCTGTGCACACCCCCTGGCCC-CCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGAC
713 TGTGCGCACACCCCCCGGCCCACCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
** *
13985106 GATGCTCTAACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-GCAT
778 GATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
13985170 GTGCTACCATAACCCTCGATCCGGTCCGATATTAGACTGGGACTAAACTCTGTATG
843 GTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
13985226 CTTAGACTGGGAATGAACTCCGTATGCCTCAGGCAACCCACGAAACGAG-AGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA-TGCGGGCGCTCAG
* * * * * * * *
13985290 CCGGCTAGAGGGGCGGGATGCATAAATCGGGGATCATCCGGGTCCCCTTTTACGTCCTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGT-CGGGTCCCCCTCTGCGTGCTGCCAATC
**** ** * * *
13985355 CTGCTGTTGCAACCCTTGGTTCGATCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
129 CTGCTACCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
13985420 ACCGATGAATCGAGCGGACGGGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
13985485 GTGGATCGATAGGGTGGTAGGTGGGTTTTGGCATATCTTCATATTTCTACGTGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
13985550 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCAAGGCAAGACAAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
13985615 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTCGG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGA
* * * * * *
13985680 ATGGAGTTTTGACCACAAACTTGGTAGACGTGATCCTTGTATTCTTATTGGCATGCACAAAACAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
13985745 TTCAGCGAAAAAATCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
13985810 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
13985875 TCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATTAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
13985940 GTGCGTACACCCCCC
714 GTGCGCACACCCCCC
13985955 ACTGCGTGCT
Statistics
Matches: 1416, Mismatches: 187, Indels: 41
0.86 0.11 0.02
Matches are distributed among these distances:
887 28 0.02
888 7 0.00
889 536 0.38
890 6 0.00
891 2 0.00
892 86 0.06
893 18 0.01
895 1 0.00
896 3 0.00
897 681 0.48
898 48 0.03
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCAATCCT
GCTACCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCACCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13986742 original size:26 final size:26
Alignment explanation
Indices: 13986713--13986765 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13986703 CCGGTCCGAT
13986713 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13986739 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13986765 C
1 C
13986766 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13987656 original size:25 final size:26
Alignment explanation
Indices: 13987606--13987657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13987596 CAGGTCCGAT
13987606 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13987632 CTTAGACTGGGAATG-ACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13987657 C
1 C
13987658 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13988252 original size:890 final size:880
Alignment explanation
Indices: 13985999--13988736 Score: 3302
Period size: 904 Copynumber: 3.1 Consensus size: 880
13985989 GGTCCAGTCT
* * ** *
13985999 GATC-TAGACTGGAAATGAACTCCGTATGTCTAAGTTAACCGACGAAACGAGTGGGCGGGC--G-
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * *
13986060 G-GCGGGAACTACGCTGGCCAGAG-AGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGCAGGT
66 GAGCGGGCACTACGC-CGCCAGAGAAG-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
13986123 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACA
129 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGTTTGTAAATTCATACA
*
13986188 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATT
194 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTCATGATT
* * *
13986253 TTTGAAACTTTTTACGGTT-TAGGATTTTTTTAAATTCTTTCGAAAGGAGTTTTGGCCCCAAACA
258 TTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAA-A
** * *
13986317 -TGGTATATGTGA---TTGTTATTTTTGTTGGCATGCAC-AAACAAATTCAGCTAAAAACTCGAA
320 TTATTAGACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAACAAA-TCAGCTAAAAACTCGAA
13986377 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGG
383 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGG
* * * * * *
13986442 CAGTAAACCTGTAAAATCACAAATGCTTTTTAAGGGAGCGTGAGTTCTCAAGGTTTGATGAGCGA
448 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
13986507 TAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
513 TAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATC-CACATCATGTGCACA-ACCCCCCGGC
* * * *
13986572 CCCCCCGATCGCTGGAACCCCAATGTCGTCGATCAAGTTCTCCGGTGATGCTCTGATGATGCTAC
575 CCCCCCGATCGCCGAAACCCCAATG-CGTCGATCAAGTTCTCC-G-GA---TC-G--GATGGTGC
* * * * * * *
13986637 CCCGGTGAAGAAAGATGCGGTAGCAGCACATGCCCGAGCCCAGCACGTGCTGCCACAACGCTCGA
631 CCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT--CTCAACCCTCG-
*
13986702 TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
693 TCAGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * *
13986767 TAAGTTAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGCCAAAGGGGCGAGATGCGCAAGCCA
757 TAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACCGTCCAAAGGGGCG-GATGCGCAAGCGA
* * * * *
13986832 GGGATCTGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTG-TCACAACCC-TCGATCTGGTCC
821 -GGATCGGTCGGGTCCCCCTCT-AGTGCTGCCGATCCTGCTGCT-GCAACCCTTAG-T-TCGTCC
*
13986895 GATCTTAGACTGGGAATGAACTCCGTATGCGC-AAGCCAACCGATGAAACGAGCGGGCGGGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGC-CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
13986959 CGAGGGGGCACGACGCCGACCAGAGAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGT
65 CGAGCGGGCACTACGCCG-CCAGAGAAGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
13987024 GGGTTTAGGCACATCTTCGTATTTCTACATGCCAATGCCCTTTTTGT-GTCTTGTAAATTCATAC
129 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGT-TTGTAAATTCATAC
*
13987088 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTTGTCATGAT
193 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT-TCATGAT
** * * * **
13987153 TTTCAAAACTTTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGCCCCAAGC
257 TTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAAA
* * *
13987218 TTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACTGGAAGT
320 TTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATCAGCTAAAAACTCGAAGT
*
13987283 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
385 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCA
13987348 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
450 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*
13987413 GGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCACACATCATGTGCACAGACCCCCCGACCC
515 GGGGGCCAATATAAGGGCCAAGTAC-AGCACCCATC-CACATCATGTGCACA-ACCCCCCGGCCC
*
13987478 CCCCGATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCC-GA-C-GATGGTGCCCCGATGAAG
577 CCCCGATCGCCGAAACCCCAATG-CGTCGATCAAGTTCTCCGGATCGGATGGTGCCCCGATGAAG
* *
13987540 AAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTACTGCAACCCTCAGTCAGGTCCGA
641 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CT-CAACCCTC-GTCAGGTCCGA
13987605 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-ACTCCGTATGCCTAAGTCAACC
703 TCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * ** * * * *
13987669 CACAAAAGGAGTGTGTGGTCGCTCAACCGTCCATAGGGCCTGGATGCGCAAGTCGAGGATCGGTC
767 CACGAAACGAGCATGCGGGCGCTCAACCGTCCAAAGGGGC-GGATGCGCAAG-CGAGGATCGGTC
* * * ** * *
13987734 GGGTCTCCCTCTACGTGCTGCCAATACTTTTGCTGCAACCCTTTGTTCAGTTC
830 GGGTCCCCCTCTA-GTGCTGCCGATCCTGCTGCTGCAACCCTTAGTTC-GTCC
* * *
13987787 GATCTTAGACTGGGAATGAACACCGTATGCCTAAGCCAATCGACGAAAAGAGCGGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* *
13987852 GAGCGGGCACTACGCCAGCCAGAGAAGCGGGATGCGCAAGCCGTGGATCAATAGAGTGGTAGG-G
66 GAGCGGGCACTACGCC-GCCAGAGAAGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
13987916 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAA
130 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAA
* * * *
13987981 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTACTTTTCACGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTCATGATTT
* *
13988046 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCCCAAAATTA
259 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAAATTA
* *
13988111 TTAGACGTGATCCTTGTATTTTTGTTGGGATGCGCAAAACAAATCAGCTAAAAA-TCCGAAGTGT
323 TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATCAGCTAAAAACT-CGAAGTGT
* * * *
13988175 ACAAGATTTTGGGACCACTTGAAAAAAGTGTCCTCA-CTCTAGACACTTTAATGGCTACTGGCAG
387 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTC-AGACACTTTAATGGCTACTGGCAG
* * * *
13988239 CAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAA
451 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* *
13988304 GGGGCCAATATAAGGGCCTAGTATCAGCACCC-T-----TC----GCAC-ACCCCCTCGGCCCCT
516 GGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCCACATCATGTGCACAACCCCC-CGGCCCCC
** * *
13988358 CCGATCATCGAAACCCCAATGCATCCGGTCAAGTTCTCCGATGATGCTCGGTAATGGTGCCCCGA
579 CCGATCGCCGAAACCCCAATGCGT-CGATCAAGTTCTCCG--GA---TCGG--ATGGTGCCCCGA
* * * *
13988423 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCTCAGCATGTGCTGTCAAAACCCTCGGTCCA-
636 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCTC--AACCCTC-GT-CAG
* * * *
13988487 GTCCGATCTTAGACTGGAATGAAATCCGTATGCTTAGATTGAGAATGAACTCCGTATGCGTAAGT
697 GTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
13988552 CGACCCACGAAACGAGCATGCGGGCGCTC-AGCGTGCCAGAGGGGCAAGATGCGCAAGCCGGGGA
762 CAACCCACGAAACGAGCATGCGGGCGCTCAACCGT-CCAAAGGGGC-GGATGCGCAAG-CGAGGA
* * *
13988616 TCGG-CTGGGTCCCCCTCTTAGTGCTACCGATCCTGCTACTGTAA-CCTTCAGTTCGATCC
824 TCGGTC-GGGTCCCCCTC-TAGTGCTGCCGATCCTGCTGCTGCAACCCTT-AGTTCG-TCC
* * * *
13988675 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCTGTCGGGCG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
13988737 CTTAGCCGAC
Statistics
Matches: 1600, Mismatches: 186, Indels: 120
0.84 0.10 0.06
Matches are distributed among these distances:
877 8 0.00
878 37 0.02
879 4 0.00
881 2 0.00
883 2 0.00
885 1 0.00
886 2 0.00
887 40 0.03
888 230 0.14
889 14 0.01
890 248 0.16
891 123 0.08
892 222 0.14
893 114 0.07
894 1 0.00
896 4 0.00
897 49 0.03
898 1 0.00
899 1 0.00
900 6 0.00
901 173 0.11
902 47 0.03
903 8 0.00
904 255 0.16
905 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (880 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GAGCGGGCACTACGCCGCCAGAGAAGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCATGATTTTT
GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAAATTATTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACAGCACCCATCCACATCATGTGCACAACCCCCCGGCCCCCCCGATCG
CCGAAACCCCAATGCGTCGATCAAGTTCTCCGGATCGGATGGTGCCCCGATGAAGAAAAATGCGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTCTCAACCCTCGTCAGGTCCGATCTTAGACTGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
GCGGGCGCTCAACCGTCCAAAGGGGCGGATGCGCAAGCGAGGATCGGTCGGGTCCCCCTCTAGTG
CTGCCGATCCTGCTGCTGCAACCCTTAGTTCGTCC
Found at i:13988522 original size:25 final size:26
Alignment explanation
Indices: 13988494--13988545 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13988484 CCAGTCCGAT
13988494 CTTAGACTG-GAATGAAATCCGTATG
1 CTTAGACTGAGAATGAAATCCGTATG
* *
13988519 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAAATCCGTATG
13988545 C
1 C
13988546 GTAAGTCGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAAATCCGTATG
Found at i:13988809 original size:158 final size:158
Alignment explanation
Indices: 13988519--13988884 Score: 402
Period size: 158 Copynumber: 2.3 Consensus size: 158
13988509 AATCCGTATG
* * * * * *
13988519 CTTAGATTGAGAATGAACTCCGTATGCGTAAGTCGACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCATGCGGGCGCTCAGC
* * * * *
13988584 GTGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTTAGTGCTACCGATCC
66 GTACCAAAGGGG-AAGATGCGCAAGCCAGGGATCGGCTGGGTCCCCCTCTGAGTACTACCGATCC
*
13988649 TGCTACTGTAACC-TTCAGTT-CGATCCAAT
130 TGCTACTGCAACCATT--GTTCCGATCCAAT
* *
13988678 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-TGTCGGGCGCTTAG
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCATG-CGGGCGCTCAG
* * * **
13988742 CCG-ACCAAA-GGGAGGGATGCGCAAGCCAGGGATC-GATCGGGTCCCCCTCTGCGTACTGTCGA
65 -CGTACCAAAGGGGA-AGATGCGCAAGCCAGGGATCGGCT-GGGTCCCCCTCTGAGTACTACCGA
13988804 TCCTGCTACTGCAACCATTGTTCCGATCCAAT
127 TCCTGCTACTGCAACCATTGTTCCGATCCAAT
* * * * * *
13988836 TTTAGATTGGAAATGACCTTCGTATGTCTGAGCCAACCGATGAAACGAG
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
13988885 TGGGCGGACG
Statistics
Matches: 175, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
157 6 0.03
158 108 0.62
159 59 0.34
160 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCATGCGGGCGCTCAGC
GTACCAAAGGGGAAGATGCGCAAGCCAGGGATCGGCTGGGTCCCCCTCTGAGTACTACCGATCCT
GCTACTGCAACCATTGTTCCGATCCAAT
Found at i:13989580 original size:26 final size:26
Alignment explanation
Indices: 13989544--13989596 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13989534 CTGGTCTGAT
*
13989544 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13989570 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13989596 C
1 C
13989597 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13990877 original size:748 final size:742
Alignment explanation
Indices: 13988837--13991096 Score: 3303
Period size: 727 Copynumber: 3.0 Consensus size: 742
13988827 CGATCCAATT
* * * * * * * *
13988837 TTAGATTGGAAATGACCTTCGTATGTCTGAGCCAACCGATGAAACGAGTGGGCGGACGGGCAGGC
1 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCAGGC
* *
13988902 GGGCACTACATCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAGGTGGGTT
66 GGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
13988967 TAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACACTGGT
131 TAGGCACATCTTCATATTTCTGCATG-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
13989032 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGA
* * * *
13989097 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTGTCGAAAGGAGTTTTGGCCCTAAACTTGGTAG
259 AACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
13989162 ATGTGATCCTTGTATTTTTATTGGCATGCACAAAAACAA-TCAGCTAAAAACTCGAAGTGTACAA
324 ACGTGATCCTTGTATTTTTATTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAA
** * * *
13989226 GATTTTGTGACCATTTGAAAAATTTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGGAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
13989291 CTGTATAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTGGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
13989356 CAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCACACACCGCGCCGGCCCCCCCG
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCACACACCCCCCCGGCTCCCCCG
** * * *
13989421 ATCG-CGGGAACCCTAATTCCGCCGATCAGGTTCT-C-CG--G---C-G--ATGGTGCTCC-AGC
583 ATCGTC-GGAACCAAAATGCCGCCGGTCAGGTTCTCCTCGATGCTCCGGCAATGGTGCCCCGA-C
* *** * *
13989474 GAAGAAAAATGCGGCACCAGCACTTTTTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGT
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGT
*
13989539 CTGATCTTAGACTGGGAATGAACTTCGTATGC
711 CTGATCTTACACTGGGAATGAACTTCGTATGC
* * *
13989571 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-G-TA-AA-CGAGCGGGCGGGC-GGC
1 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCAGGC
** *
13989631 ---CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTT
66 GGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
13989693 TAGGAATATCTTCATATTTCTGCGTGCAATTGCCATTTTTATGTCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCAA-TGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
13989758 CTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTCAA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-GA
* **
13989823 AACTTTTT-TGCGGTTCGAG-TTTGTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTAT
259 AACTTTTTAT--GGTTCGAGATTT-TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
13989886 TAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTAC
321 TAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
13989951 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
13990016 ACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
13990081 GCCAATATAAGGGTCAAGTATCAGCACCCATCGCACATCATCTGCACACACCCCCCCGGCTCCCC
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCACACACCCCCCCGGCTCCCC
*
13990146 CGATCGTCGGAACCAAAATGCAGCCGGTCAGGTTCTCCATCGATGCTCCGGCAATGGTGCCCCGA
581 CGATCGTCGGAACCAAAATGCCGCCGGTCAGGTTCTCC-TCGATGCTCCGGCAATGGTGCCCCGA
* *
13990211 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAG
645 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGG
13990276 TCTGATCTTACACTGGGAATGAACTTCGTATGC
710 TCTGATCTTACACTGGGAATGAACTTCGTATGC
* *
13990309 TTAGATTGGGAATGAACTCCGTACGCCTAAGCCAACCAATGAAACAAGCGGGCGGGCGGGCAGGC
1 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCAGGC
* *
13990374 GGGTGGGCATTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTG
66 ----GGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
13990439 GGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCA-TTTTATGGCTTGTAAATTCATACAA
127 GGTTTAGGCACATCTTCATATTTCTGCATG-CAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
13990503 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCATTTTCTATTTTTCATGATTT
191 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
13990568 GTGAAACTTTTTATGGTTCAAGATTTTTTAAACTTTTTTCGGAGGGAGTTTTGGCCCCAAACTTG
256 -TGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
13990633 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTA
320 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
13990698 CAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
385 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
13990763 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATATGG
450 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
13990828 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCACACA-CCCTCTGGCT-CC
515 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCACACACCCCCCCGGCTCCC
13990891 CCGATCGTCGGAACCAAAATGCCGCCGGTCAGGTTCTCCGTCGATGCTCCGGCAATGGTGCCCCG
580 CCGATCGTCGGAACCAAAATGCCGCCGGTCAGGTTCTCC-TCGATGCTCCGGCAATGGTGCCCCG
* *
13990956 ACGAAGAAAAATGTGGCACCAGCACCATGCCCGAGCCCCAGCATGTGCTTGTCCCGCAACCCTTG
644 ACGAAGAAAAATGCGGCACCAGCA-CATGCCCGAG-CCCAGCATGTGC-TG--CCGTAACCCTTG
*
13991021 GTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGC
704 GTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGC
* *
13991060 TTAGATTGGGAATGAACTCCATATGCCTAAGTCAACC
1 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACC
13991097 CATAAAACGA
Statistics
Matches: 1366, Mismatches: 120, Indels: 63
0.88 0.08 0.04
Matches are distributed among these distances:
725 7 0.01
726 180 0.13
727 307 0.22
728 2 0.00
729 3 0.00
730 12 0.01
731 1 0.00
732 2 0.00
733 1 0.00
734 33 0.02
735 1 0.00
736 1 0.00
738 134 0.10
739 2 0.00
740 1 0.00
741 2 0.00
742 12 0.01
743 3 0.00
746 87 0.06
747 18 0.01
748 287 0.21
749 98 0.07
750 87 0.06
751 85 0.06
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (742 bp):
TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCAGGC
GGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAA
CTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCACACACCCCCCCGGCTCCCCCGATC
GTCGGAACCAAAATGCCGCCGGTCAGGTTCTCCTCGATGCTCCGGCAATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCTGAT
CTTACACTGGGAATGAACTTCGTATGC
Found at i:13991062 original size:26 final size:26
Alignment explanation
Indices: 13991033--13991085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13991023 CCGGTCTGAT
*
13991033 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
13991059 CTTAGATTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
13991085 C
1 C
13991086 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:13991969 original size:26 final size:26
Alignment explanation
Indices: 13991933--13991985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13991923 CCTATCCGAT
13991933 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
13991959 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13991985 C
1 C
13991986 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13992528 original size:896 final size:895
Alignment explanation
Indices: 13990308--13994606 Score: 5207
Period size: 877 Copynumber: 4.8 Consensus size: 895
13990298 ACTTCGTATG
* * * * * *
13990308 CTTAGATTGGGAATGAACTCCGTACGCCTAAGCCAACCAATGAAACAAGCGGGCGGGCGGGCAGG
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G--GG
* ** *
13990373 CGGGTGGGCATTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGT
62 C----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
13990438 GGGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCA-TTTTATGGCTTGTAAATTCATACA
123 GGGTTTAGGCACATCTTCATATTTTTG-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
13990502 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCATTTTCTATTTTTCATGATT
187 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * *
13990567 TGTGAAACTTTTTATGGTTC-AAGATTTTTTAAACTTTTTTCGGAGGGAGTTTTGGCCCCAAACT
252 TTTGAAACTTTTTACGGTTCGGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
13990631 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTG
316 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
13990696 TACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
381 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
13990761 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAT
446 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
13990826 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCACACACCCTCTGGCTCC
511 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * *
13990891 CCGATCGTCGG-AACCAAAATGCCGCCGGTCAGGTTCTCCGTCGATGCTCCGGCAATGGTGCCCC
576 CCGATCATCGGAAACC-CAATGCCGCCGGTCAGGTTCTCCGACGA--CTCCGG--ATGGTGCCCC
* * *
13990955 GACGAAGAAAAATGTGGCACCAGCACCATGCCCGAGCCCCAGCATGTGCTTGTCCCGCAACCCT-
636 GACGAAGAAAAATGCGGCACCAGCA-CATGTCCGAG-CCCAGCATGTGC-TG--CCGTAACCCTC
** * * * * *
13991019 TGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCATAT
696 TAATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * * * *
13991084 GCCTAAGTCAACCCATAAAACGAGCGTACGAGCGCTTAGTCGGCCAGA-AGGGCGGGATGCGCAA
761 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGA-GGCGGGATGCGCAA
* * * * * * *
13991148 GCC-GAGGATCGACCGCG-TCACCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGGTCCG
825 GCCAG-GGATCGATCGGGATCCCCCTCTGCATGCTGCCGATCCTACTACCACAACCCTCGGTTCG
13991211 GTCTGAT
889 GTCTGAT
* * * *
13991218 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC-AACGGGCGGACGGGCGGG
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GG
* *
13991282 CAAGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 ---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * * *
13991347 TTAGGCACAACTTCATATTTCTGCATGCCAATGCTATTTTTATGGCATGTAAGTTCATACAATGG
127 TTAGGCACATCTTCATATTTTTG-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
13991412 TCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCA
191 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * *
13991477 AAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGACACCAAACTTGGTA
256 AAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
13991542 GGCGTAATCCTTGTATTTTTTTTCGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
321 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
13991607 GATTTTGTGACCATTTCAAAAAAGTGTCCTCATTTC-GCACACTTTAATGGCTACTGGCAGCAAA
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAA
* * *
13991671 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTGTCGAGGTTTGATGAGGGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
13991736 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * **
13991801 TCACCGGAAACCCAATGTCGCCGGTCAGGTTCTCCGACGACACTCCAGGATGGTGCCCCGGTGAA
580 TCATCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACG--ACTCC-GGATGGTGCCCCGACGAA
* * *
13991866 GAAAAATGCGGCACCAGCACATGTCAGAGCCCAGCATGTGCTGTCGTAACCCTCT-ATCCTATCC
642 GAAAAATGCGGCACCAGCACATGTCCGAGCCCAGCATGTGCTGCCGTAACCCTCTAATCCGATCC
* **
13991930 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAA
707 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
13991995 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCGGGATGCGCAAGCCAGGGATCGG
772 CCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCAGGGATCGA
* *
13992060 TC-GGATCCCCCT-TGCATGCTGCCAATCCTACTGCCACAACCCTCGGTTCGGTCTGAT
837 TCGGGATCCCCCTCTGCATGCTGCCGATCCTACTACCACAACCCTCGGTTCGGTCTGAT
* * *
13992117 CTTAGTCTGAGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGC-GGCGGGCGGGCGGG
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
13992181 CACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATACCGGTGGTAGGT-GGTTTA
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTA
*
13992245 GGCA-ATCTTCATATTTTTTGTGTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGT
130 GGCACATCTTCATA-TTTTTG-G-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
13992309 CCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTCTTCGATTTTTCATGATTTTTGA
192 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * ** *
13992374 AACATTTTGCGGTTCGGAATTTTTTAAAATTTTTTCGGAAAAAGTTTTGGCCCCAAACCTGGTAG
257 AACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
13992439 ACGTGATCGTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAAG
322 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
13992504 ATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
13992569 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
452 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
13992634 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAGC-CCCCCCGGCCCCCCGAT
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCCCCCGGCCCCCCGAT
* * *
13992698 CATCGGAACCCCAATGACGTCGGTCAGGTTCTCC-A-G----C-GA---TGCCCCGACGAAGAAA
581 CATCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGACTCCGGATGGTGCCCCGACGAAGAAA
* * *
13992753 AA-GACGACACCAGCACAT-TCTTGAGCCCAGCATCTGCTGCCGTAACCCTCAGTTCGGTTCAAT
646 AATG-CGGCACCAGCACATGTC-CGAGCCCAGCATGTGCTGCCGTAA-CC-C---TC---T-AAT
*
13992816 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAA
700 C-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * *
13992881 TTAATTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGCCGGCCAGAGGGGC
749 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGAGGC
* *** * * *
13992946 GGGATGCGCAAGCCAGAGATCGATCGGGA-CCCCCTCTATGTGCTGCTGATCCTGCTGCCACAAC
814 GGGATGCGCAAGCCAGGGATCGATCGGGATCCCCCTCTGCATGCTGCCGATCCTACTACCACAAC
*
13993010 CCTCGGTTCGGTATGAT
879 CCTCGGTTCGGTCTGAT
* * *
13993027 ATTAGACT-AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCCGGCGG
1 CTTAGACTGA-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* *
13993091 GCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
65 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
13993156 GGCACATCTTCATATTTTTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTTTG-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
13993221 CTTAAGCCTTCACGTGTAGTTTCATGGCAAGACAACTCATTTTTTATTTTCCATGATTTTTGAAA
194 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
** * * * **
13993286 CTTTTTGTGGTTC-GAGATTTTTTTAAATTTTTTTGGAAGGATTTTTGAACCCAAACTTGGTAGA
259 CTTTTTACGGTTCGGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
13993350 CGTGATCCTTGTATTTTTTTTGGCATCCAC-AAAAAATTCAGTTTAAAACTCGAAGTGTACAAGA
323 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
** * * * *
13993414 TTTCATGACTATTTGAACAAAA-TGTCCCCATTTCAAACACTTTAATGCCTATTGGCAGCAAACC
388 TTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
13993478 TGTAAAATCTGAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGC
452 TGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
13993543 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCCG
516 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCG
* *
13993608 ATCATCGGAACCCCAAT---G-C---C--G--C-CCG--G--T---GATGGTACCCCGACGAAGA
579 ATCATCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGACTCCGGATGGTGCCCCGACGAAGA
* * * * * * ** * *
13993654 AAAATGCGGCATCAACATATGCCCGAGCCTAGAATGTGCTGCCGTAACCCTC-GGTCCGGTTCGA
644 AAAATGCGGCACCAGCACATGTCCGAGCCCAGCATGTGCTGCCGTAACCCTCTAATCCGATCCGA
* * * * * * * *
13993718 TCATAGACTGGCAATGAAATCTGCATGCTTAGGCAGGGAATGAACTCCGTATGCCTAAGTCAACT
709 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
13993783 TACGGAACGAGCGTACGGGCGCTCAGCCGGCCATA-AGGGCAGGATGCGCAAGCCTA-GGATCGA
774 CACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGA-GGCGGGATGCGCAAGCC-AGGGATCGA
* ** * * *
13993846 TCGGGA-CCCCCTCTGCGTGCTATCGATCCTACTACCGCAACCCTTGG-TCTGGT-TCAAT
837 TCGGGATCCCCCTCTGCATGCTGCCGATCCTACTACCACAACCCTCGGTTC-GGTCT-GAT
* ** * **
13993904 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCCGATGGG
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
** *
13993969 CACTACATCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
13994034 GCACATCTTAATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTTTG-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
13994099 TTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGA-TTTGGAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * * *
13994163 TTTTCACGGTTCAGG-ATTGTTTAAAATTTTTTCGAAAGAAATTTTGGCCCCAAATTTTGTAGAC
260 TTTTTACGGTTC-GGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
13994227 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAAA-TCAGCTAAAAACTCAAAGTGTACAAGA
324 GTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
13994291 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTT
388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
13994356 GCAAAATCTCAAATGCTCTTTAAGGGGGTGTGA-TGTCTCGAGGTTTGATGAGGGATAGGGGGCC
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT-TCTCGAGGTTTGATGAGGGATAGGGGGCC
*
13994420 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCCCAGCCCCCCT
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCGGCCCCCC-
* * * *
13994485 GATCATCGGAATCCCAATACCGCCGGTCAGGTTCTCCGACGATGCTCTGGTGATGGTGCCCTGGA
578 GATCATCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGA--CTC-CG-GATGGTGCCC-CGA
* * * * *
13994550 -GAAGAAAAATACAGCACCAGCACATG-CTCGAGCCTAGCATGTGCTACCGCAACCCTC
638 CGAAGAAAAATGCGGCACCAGCACATGTC-CGAGCCCAGCATGTGCTGCCGTAACCCTC
13994607 GGTCTGGTCT
Statistics
Matches: 2953, Mismatches: 330, Indels: 221
0.84 0.09 0.06
Matches are distributed among these distances:
875 1 0.00
876 174 0.06
877 480 0.16
878 32 0.01
879 3 0.00
881 2 0.00
882 4 0.00
883 50 0.02
884 2 0.00
885 2 0.00
886 2 0.00
887 1 0.00
888 4 0.00
889 1 0.00
890 3 0.00
891 1 0.00
892 1 0.00
893 5 0.00
894 9 0.00
895 60 0.02
896 429 0.15
897 2 0.00
898 5 0.00
899 91 0.03
900 139 0.05
901 61 0.02
902 8 0.00
903 60 0.02
904 10 0.00
905 126 0.04
906 409 0.14
907 11 0.00
908 4 0.00
909 246 0.08
910 402 0.14
911 80 0.03
912 33 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTTTGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
TTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCG
GAAACCCAATGCCGCCGGTCAGGTTCTCCGACGACTCCGGATGGTGCCCCGACGAAGAAAAATGC
GGCACCAGCACATGTCCGAGCCCAGCATGTGCTGCCGTAACCCTCTAATCCGATCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTACGGGCACTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCAGGGATCGATCGGGATCC
CCCTCTGCATGCTGCCGATCCTACTACCACAACCCTCGGTTCGGTCTGAT
Found at i:13992894 original size:26 final size:26
Alignment explanation
Indices: 13992816--13992881 Score: 123
Period size: 26 Copynumber: 2.5 Consensus size: 26
13992806 TCGGTTCAAT
13992816 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13992842 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13992868 CTTAGACTAGGAAT
1 CTTAGACTGGGAAT
13992882 TAATTCTGTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13995290 original size:721 final size:714
Alignment explanation
Indices: 13993877--13995360 Score: 2133
Period size: 721 Copynumber: 2.1 Consensus size: 714
13993867 ATCGATCCTA
* * * * * *
13993877 CTACCGCAACCCTTGGTCTGGT-TCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAAC
1 CTACCGCAACCCTCGGTCTGGTCT-GAGCTAAGACTGGGAATGAACTCTATATGCCTAAGCCAAC
* *
13993941 CGACGAAACGAGCGGGCGGGCCGATGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCAT
65 CGACGAAACGAGCGGGCGGGCCGAGGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCAT
* *
13994006 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTTTGCGTGCCAATGCCATTTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATGCCATTTTT
*
13994071 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTT
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
*
13994136 GTTTTCTATTTTTCACGATTTGGAAACTTTTCACGGTTCAGGATTGTTTAAAATTTTTTCGAAAG
260 GTTTTCTATTTTTCACGATTTGAAAACTTTTCACGGTTCAGGATTGTTTAAAATTTTTTCGAAAG
* * *
13994201 AAATTTTGGCCCCAAATTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAAATC
325 AAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATC
* *
13994266 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
390 AGCTAAAAACTCAAAGTGTACAAAATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACAC
* *
13994331 TTTAATGGCTACTGGCAGCAAACTTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGATGTCTCG
455 TTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGAGGGTGTGATGTCTCG
* * * *
13994396 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
520 AGGTTTGATAAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTG
* * *
13994461 CGCACAGCCCCCCCCAGCCCCCCTGATCATCGGAATCCCAATACCGCCGGTCAGGTTCTCCGACG
585 CGCACA--CCCCCCCAGCCCCCCCGATCATCGGAACCCCAATACCGCCGATCAGGTTCTCCGACG
* * * * *
13994526 ATGCTCTGGTGATGGTGCCCTGGAGAAGAAAAATACAGCACCAGCACATGCTCGAGC-CTAGCAT
648 ATGCTCTGGCGATGCTGCCCTCGAGAAGAAAAATACAGCACCAGCACATGCCCGAGCTC-AACAT
13994590 GTG
712 GTG
*
13994593 CTACCGCAACCCTCGGTCTGGTCTGAGGGTAAGACTGGGAATGAACTCTATATGCCTAAGCCAAC
1 CTACCGCAACCCTCGGTCTGGTCTGA-GCTAAGACTGGGAATGAACTCTATATGCCTAAGCCAAC
* * *
13994658 TGACGAAACGAGCGGGTGGACAGGCG-GGCAGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
65 CGACGAAACGAGCGGGCGG---GCCGAGG--GGCACTACACCGGCCAGAGAGACGGGATGCGCAA
* ** *
13994722 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTATGTGCCAATGCCA
125 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATGCCA
*
13994787 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
190 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
* * * * * *
13994852 GACTCGTTTTCTATTTTTCATGATTTTTAAAATTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
255 GACTCGTTTTCTATTTTTCACGA-TTTGAAAACTTTTCACGGTTCAGGATTGTTTAAAATTTTTT
* * *
13994917 CGGGACG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
319 C-GAAAGAAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
*
13994981 AAAAAATCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTCAAAAAAAGTGTCCCCAT
382 AAAAAATCAGCTAAAAACTCAAAGTGTACAAAATTTTGTGACCATTT-AAAAAAAGTGTCCCCAT
* *
13995046 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGAGGGTGT
446 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGAGGGTGT
13995111 GA-GTTCTCGAGGTTTGATAAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
511 GATG-TCTCGAGGTTTGATAAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
** * * *
13995175 AAATCATGTGCGCACA-CCCCCTGGCCCCCCCGATC-GCTGGAACCCCAATGCCGTCGATCAGGT
575 AAATCATGTGCGCACACCCCCCCAGCCCCCCCGATCATC-GGAACCCCAATACCGCCGATCAGGT
* * ***
13995238 TCTTCGGCGATGCTCTGGCGAAT-CTGCCC-CGACGAA-AAAATATGTGGCACCAGCACATGCCC
639 TCTCCGACGATGCTCTGGCG-ATGCTGCCCTCGA-GAAGAAAA-ATACAGCACCAGCACATGCCC
13995300 GAGCTCAACATGTG
701 GAGCTCAACATGTG
* * * *
13995314 CTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTC
1 CTACCGCAACCCTCGGTCTGGTCTGAGCTAAGACTGGGAATGAACTC
13995361 CGTATGCTTA
Statistics
Matches: 684, Mismatches: 67, Indels: 30
0.88 0.09 0.04
Matches are distributed among these distances:
716 22 0.03
717 51 0.07
719 1 0.00
720 28 0.04
721 291 0.43
722 90 0.13
723 50 0.07
724 151 0.22
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (714 bp):
CTACCGCAACCCTCGGTCTGGTCTGAGCTAAGACTGGGAATGAACTCTATATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCCGAGGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTGAAAACTTTTCACGGTTCAGGATTGTTTAAAATTTTTTCGAAAGA
AATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCA
GCTAAAAACTCAAAGTGTACAAAATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGAGGGTGTGATGTCTCGA
GGTTTGATAAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGC
GCACACCCCCCCAGCCCCCCCGATCATCGGAACCCCAATACCGCCGATCAGGTTCTCCGACGATG
CTCTGGCGATGCTGCCCTCGAGAAGAAAAATACAGCACCAGCACATGCCCGAGCTCAACATGTG
Found at i:13995377 original size:26 final size:26
Alignment explanation
Indices: 13995341--13995419 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
13995331 CTGGTTTGAT
13995341 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13995367 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13995393 CTTAAACTGGCAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13995419 C
1 C
13995420 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13996935 original size:903 final size:899
Alignment explanation
Indices: 13994591--14003399 Score: 10557
Period size: 902 Copynumber: 9.9 Consensus size: 899
13994581 GCCTAGCATG
* ** * **
13994591 TGCTACCGCAACCCTCGGTCTGGTCTGAGGGTAAGACTGGGAATGAACTCTATATGCCTAAGCCA
1 TGCTCCCGCAACCCTCGGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
13994656 ACTGACGAAACGAGCGGGTGGACAGGCGGGCAGGCACTACACCGGCCAGAGAGACGGGATGCGCA
65 ACCGATGAAACGAGCGGGCGGGCGGGC-GG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ***
13994721 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTATGTGCCAATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
13994786 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
13994851 TGACTCGTTTTCTATTTTTCATGATTTTTAAAATTTTTTACGGTTCGGGATTTTTTAAAATTTTT
257 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* *
13994916 TCGGGACGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
322 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
* * *
13994981 AAAAAATCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTCAAAAAAAGTGTCCCCAT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCAT
* *
13995046 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGAGGGTGT
450 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
13995111 GAGTTCTCGAGGTTTGATAAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
515 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
13995176 AATCATGTGCGCACACCCCCTGGCCCCCCCGATCG-CTGGAACCCCAATGCCGTCGATCAGGTTC
580 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC
* ** * * * ** *
13995240 TTCGGCGATGCTCTGGCGAAT-CTGCCCCGACGAA-AAAATATGTGGCACCAGCACATGCCCGAG
644 -TCCGTAATGCTCCGACG-ATGGTGCCCCGACGAAGAAAA-ATACGGCACCAGCACATGCTCGAG
* *
13995303 CTCAACATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
706 CCCAGCATGTGCTGCCGCAA-CC-C--TC--G---G----T---C------TG-A-TCCG-AT-C
* * * *
13995368 TTAGACTGGGAATGAACTCCGTATGCTTAAACTGGCAATGAACTCCGTATGCCTAAGTCAACCCA
745 TTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** *
13995433 CGAAATGAGTGTGCGGGCGCTCAGCAAGCCAGAGGGGCGGGATGCGCAAGCCGGGCATCGATCGG
810 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * *
13995498 GTCCCCCTTTACGTGCTACCAATCC
875 GTCCCCCTCTACGTGCTGCCGATCC
* * * *
13995523 TGCTCCCACAACCCTCAGTCTGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCA
1 TGCTCCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13995587 ACCGACGAAACGA--------GCGGGC-GGGCACTACGCCGGCTAGTGAGACGGGATACGCAAGC
65 ACCGATGAAACGAGCGGGCGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
13995643 CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * **
13995708 TTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCATCACATGAAGTTTCATGGCAAGGTGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
13995773 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
*
13995838 GAAGGAGTTTTGGCCCCAAACTTGGGAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
325 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * * *
13995903 AATCAGCTAAAAACTTGAAGTGTACAAGA-TTTGTGTCCACTCGAGAAAAGTGTCCCCATTTCAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
**
13995967 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCATGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
13996032 CTCTAGATTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCACCGGACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
13996097 GGTGCGCACACCCCCATGGCCCCCTCGATCATCGGAACCCCAATGCCG-CGGTCAGGTTCTCCAG
585 TGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-G
* ** * *
13996161 TAATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCCAGCCCAGCA
648 TAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
* * * * * * *
13996226 TGTACTACCGCAACCCTTGGTTTGATCCAATCTTAGACTAGGAATGAACTCTATATGCTTAGATT
713 TGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACT
* ** * * * * *
13996291 GGGAATGAACACCGTATGCCTAAGTCAACCCATAAAATGAGTGTGCGGGCGCTAAGCTGGTCAGA
778 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * ** * * * *
13996356 GGGGCTGGATGTGCAAGCTGGGGATCGGCCGGGTCCCCCTTTGCATGCTGCTGATCC
843 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
** * * *
13996413 TGCTGTCGCAACCCTCGGTCTGATCTGACCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTCCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13996478 CCGATGAAACGAGTGGACGGGCGGACGGATGCGCACTACGTCGGCCAGAGAGTCGGGATGCGCAA
66 CCGATGAAACGAGCGGGCGGGCGGGCGG--G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
13996543 GCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTGCATATTTTTGCATGCCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
13996608 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *** *
13996673 GGCTCGTTTTCTATTTTTCACGATTTTTGGAA-TGTTTTGCGGTTCAAGATTTTTTTGAAATTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTAAAACT-TTTTACGGTTTGGGA-TTTTTTAAAATTTT
* * * *
13996737 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTTGAAGTGATCCTTGTATTTTTGTTGGCGTGCATAA
321 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
13996802 AAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTT-TGACCATTTGAAAAAAGTGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13996866 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13996931 AGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** ** * * *
13996996 ATTATGTGCGTACACCCCCCCCGG-CCCCCTAATCACCGGAACCCAAATGCTGTCGGTCAGGTTC
581 ATCATGTGCG--CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
13997060 TCC-----G----G-CGATGGTGCCACGGCAAAGAAAAATACGGCACCAGCACAAGCTCGAGCCC
644 TCCGTAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCC
* * *
13997115 AGCATGTGCTGCCGCAACCCTCGTTTTGGTCCGATCTTAGACT-GTGAATGAACTCCATATGCTT
709 AGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAG-GAATGAACTCCATATGCTT
* * *
13997179 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAG
773 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * *
13997244 TCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCACCCTCTGCACGT--TGCCGATCC
838 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCT--ACGTGCTGCCGATCC
** ** * * * * *
13997306 TGCTCTAGCAACATTTGGTTCAGTTC-GATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCA
1 TGCTCCCGCAACCCTCGG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
13997370 ACCGATGAAACGAGCGGGCGGGGGGGC-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
65 ACCGATGAAACGAGCGGGCGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
13997434 CGTGGTTCGATAGGGTGGTAGGTGGGTTTAGACACGTCTTCATATTTCTACATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
13997499 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
13997564 CTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTATGGTTTGGGATTTTTTTAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
13997629 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
325 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
13997694 ATTCACCTAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
13997759 ACACTTTAATGGCTACTGGCAGCAAACCTGGAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
13997824 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACTAGCACCTATCGCACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** *
13997889 TGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGT
585 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GT
* * * * *** *
13997954 GATGCTCC-AGCGATGGTGCCCTGGCAAAGAAAAATGTAGCATCAGCACATGCTCGAGCCCAGCA
649 AATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
* * * * *
13998018 TATACTGCCGCAACCCTCGGTC-CAGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTATAC
713 TGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC
* ** * ** *
13998082 TGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCACGCAGGCGCTCAATCGACCAG
777 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* *
13998147 AGGGGCAGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTACGTGCAGCCGAT-C
842 AGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
13998204 TTCTTCTCGCAACCCTCAGTTTGGT-TCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
1 TGC-TCCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * *
13998268 AACCGATGAAACGAGCGGGCAAGCGGGC-GGACATTACGCCGGCCAGAGAGACGGGATGCGTAAG
64 AACCGATGAAACGAGCGGGCGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
13998332 CCATGGATCAATAGGTTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTACATGCCAATGCCAT
129 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
13998397 TTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGATTAATGGCAAGACA
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
13998462 ACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTT--GTGTTTCGAGATTTTTTAAAATTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACG-GTTT-GGGATTTTTTAAAATTTTT
* *
13998525 TCGG-AGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCGTGCACAAA
322 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
13998589 ACAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAGGTGTCCCAATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
13998653 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
13998718 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACA
517 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
13998783 TCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCTCAATGCCGTCAGTTAGGTTCTCC
582 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
13998848 G-ACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGACTCCAGCACATGCTCGAGCCCA
647 GTA--ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCA
*
13998912 GCATGTGCTGTCC-CAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
710 GCATGTGCTG-CCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTA
** * * * *
13998976 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAATGAGCGTGTGGGCACTCCA-CCGC
774 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCGG
* * * * * * *
13999040 CCAGAGGGGTGGGATGCGTAAGTCGGAGATCGATTGGGTCCCCCTCTACGTGCTACCGATCT
838 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** *
13999102 TGCTACTGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTCCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13999167 CCGATGAAACGA----GCGGGCGGGC-GGGCACTACGCCGGCCAAAGAGACAGGATGCGTAAGCC
66 CCGATGAAACGAGCGGGCGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* ***
13999227 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCC-ATGCCATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
13999291 TTATGACTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
13999356 TAGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTACGGTTTGGGATTTTGTAAAATTTTTTCGA
261 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGG
* * *
13999421 AAGTATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
326 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
13999486 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAATAGTATCCCCATTTCGGA
391 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* **
13999551 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGCAAGTTC
456 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
13999616 TCGAGGTTTGATGAGGGATAGGTGGCCAATAT-AGGGGCAAGTACCAGCACCCATCACACATCAT
521 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
13999680 GTGCGCACA---------CCCCCC---CGTCGG----CCAA-------GTTC---TT-T-GGTGA
586 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTAA
* * * * * *
13999717 TGCTCCAACGATGGTGACCC-AGCGAAGAAAAATGCGGCACTAGCACATGCCCGAGCCCAGTATG
651 TGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATG
* *
13999781 TGCTGCCGTAA---T---AC---T-CGATC-----C-----A-G---TCCA-AT-CTTAGACTGG
715 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
* * * * * *
13999820 GAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGCGCGGGCACTCAGCCGACCAAAGG
780 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* *
13999885 GGTGGGATGCACAAGCC-GGG---GA-----T--CCCTCTACGTGCTGCCGATCC
845 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * **
13999929 TGATGCCGCAACCCTTGGT-TCGGTCTGATCTCAGACTGGGAATGAACTTTGTATGCCTAAGCCA
1 TGCTCCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
13999993 ACCGACGAAACGAGCGGGTGGGTGGGC-GGGCATTACTCCGGCCAGAGAGACGGGATGCGCAAGC
65 ACCGATGAAACGAGCGGGCGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *** *
14000057 CGTGGATC-ACTAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGGCAT
130 CGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * ** *
14000121 TATTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCGTGTGAAGCTTCATGGCAAGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
14000186 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
259 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
* *
14000251 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTGTTGGCATGCACAAAAA
324 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
14000316 AATTTAGCTAAAAACTCGAAGTGTACAAGATTATGTGACCATTTCAAAAAAGTGTCCCCATTTCA
389 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
14000381 GACACTTTAATTGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
14000445 TCTCGAGGTTTGATGAGTGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
519 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
14000509 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAACGCCGCTGGTCAGGTTCTCCG
584 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
14000574 ACAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACTAGAACATGC-CTGAGCCTAG
648 -TAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTC-GAGCCCAG
* * * * * *
14000638 CATGTGCTGCTGCAACACTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATACGCTTAGA
711 CATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGA
** * * * *
14000703 CTGGGAATGAACTTTGTATGCCTAAGTCAACCAACGAAACGAGGGTGCGGGAGCTCAGCCTGCCA
776 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** * * * * * * *
14000768 GAGGGGCGGTATGCATAAGCCGAGGATCGACCGGGTCCCCTTCTGCTTGCTGCTGATCT
841 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
**** * * * ** * *
14000827 TGCAGGTGTAACCCTCGGTCTGTTCTAATCTTAGACTATGAATAAACTCCGTATGCCTAAGCTAA
1 TGCTCCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14000892 CCCACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCACAA
66 CCGATGAAACGAGCGGGCGGGCGG--GCG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
14000957 GCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATCTTTCTACATGCCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14001022 TTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** **
14001087 GACTCGTTTTCTATTTTTC-CTAATTTTCAAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTT
258 GACTCGTTTTCTATTTTTCAC-GATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * * * * * *
14001151 TTGGAAGGCGTTTTGGCTCCAAACTTGGTACATGTGATCCTCGTATTTTTATTGGCATGCACAAA
322 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14001216 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGGAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
14001281 CAGACACTTTAATGGCTATTGGCAGTAAGCTTGTAAAAACTCAAATGCTCTTTAAGGGGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
14001346 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
517 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
14001411 TCATGAGTGCACA---------CCCCCCGATCGTCGGAACCCTAATGTCGCCGGTCAAGTTCTCT
582 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** *
14001467 G-ACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCTA
647 GTA--ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCA
* * * * * * * * * * *
14001531 GCTTGTGCTGGCGCAACCCTCGATCCGGTCTGATCTTTGACTGGGAATGAATTTCGTATGCTTAG
710 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAG
* * * * *
14001596 ACTGGGAATGAACTCCGTTTGCCTAGGTCAACCCACAAAACGAGTGTGCAGGCGCTCAGCCGGCC
775 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * ** * *
14001661 AGAGGGGCGGGATGCTCAAGCCGGGGATCGACCGAATCCCCCTCTGCGTGCTGCCAATCC
840 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
14001721 TGCTACCAG-AACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCT-CCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14001785 ACCGACGAAACGAGTGAGCGGGCGGGCGGGCTGGCACTACGCCGGCCAGAGAGAC-GGATGCGCA
65 ACCGATGAAACGAGCGGGCGGGCGGGC-GG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14001849 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATTCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
14001914 ATTTTTATGGCTTGTAAATTCATACAATGGT-CCTGTAAGCCTTCACGTAAAGTTTCATGGCAAG
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCT-TAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
14001978 ACGACTTGTTTTCCATTTTTCATGATTTTTGAAACTTTTCACTGTTTGGGATTTTTTAAAATTTT
256 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
* * * * *
14002043 TTTGGAAGGAGTTTTAGCCCCAAACTTGGTGGACGTGATCCTTTTATTTTTGTTGGCATGCATAA
321 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14002108 AAAAATTCAGCTAAAGACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14002173 TTAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
14002238 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
14002303 ATCATGTGCGCACACCCCCCGACCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
581 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
14002368 C-AACGATGCTCCGACGATGGTGCCCC-AGCGAAGAAAAATGCTGCACCAGCACATGCCCGAGCT
646 CGTA--ATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCTCGAGCC
** * * *
14002431 GGGCATGTGCTGCTGCAA-CCTCTGAT-TCGATCCGATCTTAGACT-GAGAATGAACTCCGTATG
708 CAGCATGTGCTGCCGCAACCCTC-GGTCT-GATCCGATCTTAGACTAG-GAATGAACTCCATATG
* * * * *
14002493 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGACCGTGTGGGTGCTCAGC
770 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
14002558 CGGCCAGAGGGGAGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTATATGCTGGCGATCC
835 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * * * *
14002623 TACTACCACAACCCTCAGTCCGGTCCGATCTTAGAATGGGAATTAACTCC-TATGCCTAAGCCAA
1 TGCTCCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14002687 CTGATGAAACGAGCGGGCGGGCGGGCAGGCGAGCACTACGCCTGCCAGAGAGGCGGGATGCGCAA
66 CCGATGAAACGAGCGGGCGGGCGGGC-GG-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*** * * ** *
14002752 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTTTTCACATCTTTATATTTTTGTGTGCCAAAGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14002817 ATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
14002882 GACTCGTTTTTTATTTTTCACCATTTTTAAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * * * *
14002947 CGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTTTTGGCAAGCAAAAAA
323 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAA
*
14003012 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
14003077 CAGACACTTTAATGGCTACCGACAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTAA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14003142 GTCCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCC-AGTACCAGCACCTATTGCAC
517 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGGCCAAGTACCAGCACCCATCGCAC
* ** * * * *
14003206 ATCATGTGCGCATACCCTCCCCCGAACCCCCCGATCGTCGAAACCTCAATGCTGTCGGTCAGGTT
581 ATCATGTGCGC--ACAC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * *** * * *
14003271 CTCCGATGATGCTTCGGTAATGGTGCCCCGATGAAGAAAATTACGACACCAGCACATGCTCGAGC
643 CTCCG-TAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGC
* * * * * * * *
14003336 CTAGCATGTGCTGTCGGAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
707 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCATATGC
14003400 CTAATCCAAC
Statistics
Matches: 6825, Mismatches: 857, Indels: 416
0.84 0.11 0.05
Matches are distributed among these distances:
826 1 0.00
827 84 0.01
829 1 0.00
830 11 0.00
831 161 0.02
832 292 0.04
834 2 0.00
837 4 0.00
838 79 0.01
839 2 0.00
840 3 0.00
841 6 0.00
843 1 0.00
844 6 0.00
848 4 0.00
849 1 0.00
854 5 0.00
855 4 0.00
858 3 0.00
859 1 0.00
860 2 0.00
861 64 0.01
862 1 0.00
863 3 0.00
864 62 0.01
865 1 0.00
866 1 0.00
867 3 0.00
870 2 0.00
871 4 0.00
876 1 0.00
877 3 0.00
881 7 0.00
882 1 0.00
884 6 0.00
885 4 0.00
886 1 0.00
887 87 0.01
888 147 0.02
889 350 0.05
890 201 0.03
891 5 0.00
892 130 0.02
893 895 0.13
894 499 0.07
895 4 0.00
896 2 0.00
897 504 0.07
898 171 0.03
899 476 0.07
900 3 0.00
901 66 0.01
902 1069 0.16
903 504 0.07
904 75 0.01
905 11 0.00
906 137 0.02
907 8 0.00
910 1 0.00
912 1 0.00
914 1 0.00
915 6 0.00
916 219 0.03
917 42 0.01
918 34 0.00
919 270 0.04
921 1 0.00
923 4 0.00
931 43 0.01
932 22 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGCTCCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGCGGGCGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTAA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
Found at i:13998078 original size:26 final size:26
Alignment explanation
Indices: 13998049--13998101 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13998039 CCAGTTCGAT
13998049 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
13998075 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13998101 C
1 C
13998102 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13998975 original size:26 final size:26
Alignment explanation
Indices: 13998946--13998998 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13998936 CTGATCCGAT
13998946 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13998972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13998998 C
1 C
13998999 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14002496 original size:26 final size:26
Alignment explanation
Indices: 14002467--14002519 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14002457 TCGATCCGAT
14002467 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14002493 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14002519 C
1 C
14002520 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14004009 original size:25 final size:25
Alignment explanation
Indices: 14003974--14004033 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
14003964 CAGAACCCCA
* *
14003974 ATGCTGCCGGTTAGGTTCTCC-AGCG
1 ATGCTGTCGGTCAGGTTCTCCGA-CG
14003999 ATGCTGTCGGTCAGGTTCTCCGACG
1 ATGCTGTCGGTCAGGTTCTCCGACG
14004024 ATGCT-TCGGT
1 ATGCTGTCGGT
14004034 GATGGTGCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 5 0.16
25 26 0.81
26 1 0.03
ACGTcount: A:0.12, C:0.27, G:0.32, T:0.30
Consensus pattern (25 bp):
ATGCTGTCGGTCAGGTTCTCCGACG
Found at i:14004169 original size:26 final size:26
Alignment explanation
Indices: 14004118--14004170 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14004108 CTGGTCCGAT
**
14004118 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
14004144 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
14004170 C
1 C
14004171 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14006061 original size:26 final size:26
Alignment explanation
Indices: 14006032--14006084 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14006022 CCGGTCTGAT
14006032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14006058 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14006084 C
1 C
14006085 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14006852 original size:26 final size:26
Alignment explanation
Indices: 14006823--14006873 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14006813 ATCCGATCTT
*
14006823 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGCAATGAACTCCGTATGCTG
14006849 AGACTGGCAATGAACTCCGTATGCT
1 AGACTGGCAATGAACTCCGTATGCT
14006874 TAAGTCAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (26 bp):
AGACTGGCAATGAACTCCGTATGCTG
Found at i:14007746 original size:26 final size:26
Alignment explanation
Indices: 14007717--14007769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14007707 CCGATTCGAT
*
14007717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
14007743 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
14007769 C
1 C
14007770 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:14008644 original size:26 final size:26
Alignment explanation
Indices: 14008615--14008667 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14008605 CTGGTCCGAT
14008615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14008641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14008667 C
1 C
14008668 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14009545 original size:26 final size:26
Alignment explanation
Indices: 14009509--14009561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14009499 CTGGTCTGAT
14009509 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14009535 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14009561 C
1 C
14009562 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14010115 original size:893 final size:895
Alignment explanation
Indices: 14006192--14010427 Score: 6096
Period size: 894 Copynumber: 4.7 Consensus size: 895
14006182 CACTATGTCA
*
14006192 GCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
14006257 ATATTTCTGTATGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
* *
14006322 ACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCACGATTTTTGAAAA-TTTTTTCGG
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTACGG
** * **
14006386 TTCTCGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGAT--CCAAACTTGGTAGACGTGATCCT
195 TTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTT--ATCCCCAAACTTGGTAGACGTGATCCT
* *
14006449 TGTA-TTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
258 TGTACTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
14006513 CCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTATTGGCAGCAAACCTGGAAAATC
322 CCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
14006578 TCAAATTCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
387 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGG
* *
14006643 GCCAAGAACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCACC-AGAA
451 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGA-AA
* * * * *
14006707 CCCCAATGTCG-C--T-A-G-T-T--AG-G-TTCTCCGACGATGGTGCCTCGGCGAAGAAAAATG
515 CCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * *
14006761 CGGTACCAGCACATGCCTGAGCCCAGCATGTACTGCCGCAACCCTCGGTC-GAATCCGATCTTAG
580 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG-GTCCGATCTTAG
* * * * *
14006825 ACTGGGAATGAACTCCGTATGCTGAGACTGGCAATGAACTCCGTATGCTTAAGTCAATTCACGAA
644 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAA
* ** *
14006890 ACGAGCGT-CTGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGATCGGGTC
709 ACGAGCGTAC-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTC
* * * * ** * * *
14006954 CCCCTCTGCATGTTGCTGATCCTGC-GGCTGCAACCCTCAGTCCAATCCAATCTTAGACTGGCAA
773 CCCCTCTACATGCTACCGATCCTGCTATC-ACAACCCTCAATCCAATCCAATCTTAGACTGGGAA
* **
14007018 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACTTCG
837 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-A-GCGGGCGGGCAATACACCG
* * * * *
14007080 GCCAGAGAAACGAGATGCGAAAGCTGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * * * * *
14007145 ATATTT-TGTGTGCCAATTCCATTTTTATGGCTTGTAAATACGTACAATGGTCCCCTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
* *
14007209 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
* * * ** ** *
14007274 TCAAGATTTTTTAAAAGTTTTTCGGAATTAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGT
196 TCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTATCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * *
14007339 ATTTTTTTTGGCATGCATAAAAGAATTCAGCTAAAAACTTGAAGTATACAAGATTTTGTGACCAT
261 ACTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
14007404 TTGAAAAAAAAGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
326 TTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
14007469 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAA
* * * *
14007534 GTACCAGCACTCATCGCACATCATGTGCGCACACCCCCTGGCCCCTCCGATCGCCTG-AACCCCA
456 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACC-GAAACCCCA
* * * * *
14007598 ATGCCGCAGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCA
520 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * * * * * *
14007663 CCTGCACATGTCGGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGG
585 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * *
14007728 AATGAACTCCGTATGCTTAGACCGGGAATGAACTCTGTATGCCTAAGTCAAC-CAACGAAATGAG
650 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTC-ACAAAACGAG
* ** * * * * * * *
14007792 CGTGCAAGCGCTCAGTCGGCAAGAGGGGCAGGATGCGCAAGCCGAGGATCGGCCAGGTCCCGCTC
714 CGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC
* * * * * *** *** *
14007857 TACGTGCTGCCAATCCTGCTACCATAACCCTCAATCTGGTTTGATCTTAGACTGGTAATGAACTC
779 TACATGCTACCGATCCTGCTATCACAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAACTC
14007922 CGTATGCCTAAGCCAACCGACGAAACGAGCGG-GCGGGCGGG-AGGGTACTACACCG
844 CGTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGGGCA----A-TACACCG
14007977 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
14008042 ATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
* * *
14008107 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGAT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
14008172 TC-AGGATTTTTTAAAATTTTTTTGG-AGTGAGATTTTA-CCCCAAACTTGGTAGACGTGATCCT
196 TCGA-GATTTTTTAAAATTTTTTTGGAAG-GAG-TTTTATCCCCAAACTTGGTAGACGTGATCCT
* * *
14008234 TGTACTTTTTTTGGCATGGACAAAAAAATTCATCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
258 TGTACTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
14008299 CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
323 CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
14008364 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA-GAATAGGTGGCCAATATAAGTG
388 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG-GGCCAATATAAGGG
* ** *
14008428 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCGCCGGCCCCCCCTGATCGTCGGAAC
452 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC-GATCACCGAAAC
** *
14008493 CCCAATGCCGCCGGTCAGGTTCTCCGGC-ATGCTCCGACGATGGTGCCATGACGAAGAAAAATGT
516 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
*
14008557 GGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
581 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
14008622 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAAC
646 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAAC
* * **
14008687 GAGCGTACGGGCGCTCAGCCGGCCAGAAGGGCGTGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
711 GAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
*
14008752 CTCTACATGCTACCGATCCTGCTATCACAACCCTCAATCCAATCCAATCTTAGACTGGGAAAGAA
776 CTCTACATGCTACCGATCCTGCTATCACAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAA
* *
14008817 CTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GAGCGGGCGGGCACTACACCG
841 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGGGCAATACACCG
* * *
14008871 GCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
14008936 ATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
* * * *
14009001 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
* * *
14009066 TCGGGATTTTTTAAAATTTTTTTGGAAGCAGTTTTATCCCCAAACTTGGTAGACATGATCCTTGT
196 TCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTATCCCCAAACTTGGTAGACGTGATCCTTGT
* **
14009131 ACTTTTTTTGGCATGCACAAAAAAATTCAACTAAAATTTCGAAGTGTACAAGATTTTGTGACCAT
261 ACTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
14009196 TTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
326 TTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
14009261 ATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCA
* *
14009325 AGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCGAAACCCCA
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGAAACCCCA
* *
14009390 ATGCCACCGGTCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
520 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * *
14009455 CCAGCACATGCCCGAGCCCAGCCTGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
585 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
*
14009520 AATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGC
650 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGC
*
14009585 ATACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
715 GTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
* * * *
14009650 GCATGCTACCG-TCCTGCTGTCACAACCCTCAGTCCAATCCAATCTTAGACTGGGAATGAACTCT
780 ACATGCTACCGATCCTGCTATCACAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAACTCC
* *
14009714 GTATGCCTAAGCCAACCGATGAAACGAGCGGA-CGGGCGGGCAATACACCC
845 GTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGGGCAATACACCG
* * * *
14009764 GCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGTATATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
14009829 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTG-CCCTTAAGCCTTG
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
* * * *
14009893 ACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCTGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
* *
14009958 TCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTATCCCCCAAACTTGGTAGACATTATCCTTG
196 TCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAT-CCCCAAACTTGGTAGACGTGATCCTTG
*
14010023 TACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
260 TACTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
14010088 TTT-AAAAAAAGAGTCCCCATTTCAGACACTTTAATTGCTACTGCCAGCAAACCTATAAAATCTC
325 TTTGAAAAAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
14010152 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCC
* * *
14010217 AAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCACCGGAGCCCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGAAACCCC
* * * * **
14010282 AAT-CTGCCGGTCAGGTTCTCTGGCGATGCTCCGATGATGGTGCCCCAACGAAGAAAAATATGGC
519 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
14010346 ACCAGCACATGCCCGAGCCCAGTATGTGCTACTGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
584 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
14010411 GAATGAACTCCGTATGC
649 GAATGAACTCCGTATGC
14010428 CTAACCCAAC
Statistics
Matches: 3022, Mismatches: 280, Indels: 88
0.89 0.08 0.03
Matches are distributed among these distances:
886 84 0.03
887 318 0.11
888 70 0.02
889 1 0.00
890 1 0.00
891 1 0.00
892 248 0.08
893 507 0.17
894 715 0.24
895 3 0.00
896 4 0.00
897 353 0.12
898 676 0.22
899 41 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
TCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTATCCCCAAACTTGGTAGACGTGATCCTTGT
ACTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGAAACCCCAA
TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCG
TACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTA
CATGCTACCGATCCTGCTATCACAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGGGCAATACACCG
Done.