Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 76 of 131
Found at i:14152790 original size:26 final size:26
Alignment explanation
Indices: 14152752--14152804 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14152742 CTGGTCTGAT
*
14152752 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14152778 CTTAGACTCGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14152804 C
1 C
14152805 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14153068 original size:26 final size:26
Alignment explanation
Indices: 14153032--14153084 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14153022 CTGGTCCAAT
14153032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14153058 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14153084 C
1 C
14153085 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14155672 original size:26 final size:26
Alignment explanation
Indices: 14155620--14155672 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14155610 CCGGTCCGAT
* *
14155620 CTTAGTCTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGGATG
*
14155646 CTTAGACTGGGAATGAAC-TCTGGATG
1 CTTAGACTGGAAATGAACTTC-GGATG
14155672 C
1 C
14155673 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGGATG
Found at i:14156552 original size:26 final size:26
Alignment explanation
Indices: 14156523--14156575 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14156513 CCAATCCGAT
14156523 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14156549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14156575 C
1 C
14156576 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14157321 original size:904 final size:895
Alignment explanation
Indices: 14155432--14160108 Score: 6002
Period size: 876 Copynumber: 5.2 Consensus size: 895
14155422 CATGAGAACC
** * * *
14155432 CCAAGTACCAGCACCCATTACACATCATATGCG--CACACCCCGCCGGCCCCCTCGATCGTTGGA
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGGCCCCCTCGATC-ATGGA
* * * *
14155495 ACCCCAATGTCGCCGATCAAGTTCTCTGGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAAT
65 ACCCCAATGTCG-CGGTCAGGTTCTC-CGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * *
14155560 GCAGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCGGTCCGATCTTAG
128 GC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAG
* * * *
14155625 TCTGGAAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGGATGCCTAAGTCAACCCACGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * * * ** *
14155690 ACGAGCGTGCGAGCGCTCAGTCAGCTAAAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCC
257 ACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
* * * * * * * * * * *
14155755 TCCTCTACATGCTACCAATCCTGCTACTGTAGCCCTCAGTTTGATCTGATCTTAGACTGGGAATG
322 CCCTCTGCGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCTGGTCTAATCTTAGAATGGGAATG
* * *
14155820 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGGGGCGGGTGGGTGGGCACTACGCCGAC
387 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGC---GGGC-GGCGGGCGAGCACTACGCCGAC
* * *
14155885 CAGAGAGAAGGGATGCGCAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCAT
448 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
14155950 ATTTCTACATGCCAAT-CCATTTTTTATGGTTTGTAAATTCAAACAATGGTCCCTCAAGCCTTCA
513 ATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
14156014 CGTGAAGTTTCATGGCAAGAC-AGCTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGT
577 CGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* *
14156078 GCA-GGATTTTTTAAAATTTTTTTGGAAAGAGA-TTTGGCCCCAAACTTGGTAGACATGATCCTT
641 -TAGGGATTTTTTAAAATTTTTTTGG-AAG-GATTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
14156141 GTATTTTTTTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGC
703 GTATTTTTGTTGGCATG--CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * ** * * *
14156206 AATCTGAAAAAAGTGTTTCTATTTCAGACACTTTAATGGCTTCTGGTAGCAAACCTGTAAAATCT
766 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
14156271 CATATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGATTGATGAGGGATAAGGGGCCAATATAAGGG
831 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*** * * **
14156336 CCAAGTATTGGCACCCATCGGACATCATGT--GCACACACCCCTCCGGCCCCC-CGATCGCCGGA
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGGCCCCCTCGATC-ATGGA
* * *
14156398 ACCCTAGTGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGTCGAAGAAAAAT
65 ACCCCAATGTCG-CGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * *
14156463 GTGTCACCAACACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCAATCCGATCTTAG
128 GCG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAG
*
14156528 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * * * * * *
14156593 ACGAGCGTGCGGGTGGTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCAGGGATCGGCCGTGTCC
257 ACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
* * * ** * *
14156658 CCCTCTGTGTGCTGCCGATCCTACTGCTACAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATG
322 CCCTCTGCGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCTGGTCTAATCTTAGAATGGGAATG
* * *
14156723 AACTCTGTATGCCTAACCCATCCGATGAAACGAGCAGGTGGGCGAGCGGGCGAGCACTACGCCGA
387 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGC----GGGCG-GCGGGCGAGCACTACGCCGA
*
14156788 CCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
447 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
14156853 TATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCA
512 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
14156918 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTT
577 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * *
14156983 AGGGATTTTTCAAAATTTTTTTGGAAGGCATTTTGGCCCCAAACTTGGTAGACATGATCCTCGTA
642 AGGGATTTTTTAAAATTTTTTTGGAAGG-ATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
14157048 TTTTTGTTGGCATGCATAAAAAATTCAGCTAAGAACTCAAAGTGTAC-AGATTTTGTGACCAATT
706 TTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
14157112 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
771 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
14157177 GCTCTTTAAGAGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
836 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
14157237 CCAAGTACCAGTACCCATTGCACATCATGTGCGCACACACCCCCCCGGCCCCCTCGATCATGAGA
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGGCCCCCTCGATCATG-GA
** * *
14157302 ACCCCAATACCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAAAAAAAT
65 ACCCCAATGTCG-CGGTCAGGTTCTCCG-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * * * ** *
14157367 ACGACACCAACACATGCCCGAGCCTAGCTTGTACTGCTGA-AATGCTCGATCCGATCCGATCTTA
128 GCG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGC-CACAACCCTCGGTCCGATCCGATCTTA
* * **
14157431 GATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGGCCACGA
191 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
* * * ** *
14157496 AACGAACGTGCGGGCGCTCAG-TAGGCCAGATGGGCGGGATGCGCAAGCCGACGATCAGCCGGGT
256 AACGAGCGTGCGGGCGCTCAGCCA-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT
* * * * * * * *
14157560 CCCCCTGTACGTGTTGTCGATCCTACAACTGTAACCCTCGGTCTGGTCCT-ATCTCAGACTGGGA
320 CCCCCTCTGCGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCTGGT-CTAATCTTAGAATGGGA
* *
14157624 ATGAACTCCGTATGCCTAAACCAACCGATGAAACGAGC--G-GGCGGGCGGGCACTACGCC-AGC
384 ATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGCGGGCGAGCACTACGCCGA-C
*
14157685 CAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
448 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
14157750 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
513 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
14157815 GTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACTATTTATGAAACTTTTTGCGGTTT
578 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTA
* * * * *
14157880 GGAATTTTTTAAAATTTGTTCGGAAGGAGTTTTGGCCCCTAACTTGGTAGACGTGATCCTTGCAT
643 GGGATTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
14157945 TTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
707 TTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
14158010 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
771 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
14158075 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGG
836 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
14158135 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCTGG-CCCCTCCGATCATCGG
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGGCCCCCT-CGATCAT-GG
* * * *
14158198 AACCCCAATGTTGCGGGTCAAGTTCT-C-CGA---T-----GATAGTGCCCCGACAAAGAAAAAT
64 AACCCCAATGTCGC-GGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * *
14158253 ACAGCACCAGCACATGCTCGAGCCCAACATGTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAG
128 GC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAG
** *
14158318 ACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
** * * * * *
14158383 ATAAGCGTGCGGGTGTTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGCTGGGTCC
257 ACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
* * ** *
14158448 CCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACTCTCAATCTGGTCCAATCTTAGAATGGGAATG
322 CCCTCTGCGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCTGGTCTAATCTTAGAATGGGAATG
** * * * *
14158513 AACTCCGTATATCTAAGCCAACCGACGAACCGAGC--G-GGCAGGCGAGCACTACGCCGGCCAGA
387 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGCGGGCGAGCACTACGCCGACCAGA
**
14158575 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATCCACATCTTCATATTT
452 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
14158640 CTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
517 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * ** * *
14158705 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGACTTACGAAACTTTTTACAGTTTGGGA
582 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTAGGGA
* * * *
14158770 TTCTTTCAGAA------T-G-A-G-TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGAATTTTT
647 TT-TTTTAAAATTTTTTTGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
*
14158825 GTTGGCATGAAGAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
711 GTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
14158890 AAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
775 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
14158955 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGG
840 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
14159011 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCTGGCCCCCCCGATCGTCGGA
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGGCCCCCTCGATCAT-GGA
* * * * *
14159075 ACCCCAATGTCGCGGGTCAGG-T-T---C--T--T-CGACGATAGTGCCTCGACAAAGAAAAATA
65 ACCCCAATGTCGC-GGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
* * * **
14159130 CGACACCAGCACATGCTCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCGATTTGATCTTAGA
129 CG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGA
** * * * *
14159195 CTGGGAATGAACTTTGTACGCTTAGACTAGGTATGAACTATGTATGCCTAAGTCAACCCACGAAA
193 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
* * * *
14159260 CGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCGGCCGGGTGCC
258 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * * * *
14159325 CCTCTGTGTGCTGCCGATCCTGCTACCGTAACTCTCGATCTGGTCCAATCTTAGAATGGGAATGA
323 CCTCTGCGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCTGGTCTAATCTTAGAATGGGAATGA
* ** * * * *
14159390 ACTTCGTATATCTAAGCCAACCGACGAACCGAGC--G-GGCGGGTGAGCACTACGCCGGCCAGAG
388 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGCGGGCGAGCACTACGCCGACCAGAG
* ** *
14159452 AGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATCCACATCTTCATATTGC
453 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
14159517 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAA
518 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * **
14159582 GTTTCATGGCAAGATGACTTGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCA-GGA
583 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-AGGGA
* * *
14159646 TTTTTTAAAATTTTTTCGAAAGGATTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
647 TTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
14159711 GTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTTTGACCATTTGAAAA
711 GTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * * *
14159776 GAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGAAGCAAACCTATAAAATCTGAAATGCTCT
776 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
14159841 TTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
841 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
14159896 CCAAGAACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCCAGCCCCC-CGATCACCGGA
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGGCCCCCTCGATCA-TGGA
* * * *
14159958 ACCCCAATGCCGTTGGTCAGGTTCTCCTACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
65 ACCCCAATGTCG-CGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * * * *
14160023 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCCCAACCCTCGATCCGGTCTGACCTTAT
128 GC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAG
14160088 ACT-GGAATGAACTCCGTATGC
192 ACTGGGAATGAACTCCGTATGC
14160109 CTAAGCCAAC
Statistics
Matches: 3356, Mismatches: 350, Indels: 145
0.87 0.09 0.04
Matches are distributed among these distances:
872 1 0.00
873 1 0.00
874 1 0.00
875 9 0.00
876 793 0.24
877 4 0.00
878 1 0.00
879 1 0.00
880 1 0.00
883 30 0.01
884 14 0.00
885 196 0.06
886 514 0.15
887 8 0.00
889 1 0.00
891 2 0.00
893 16 0.00
894 84 0.03
895 3 0.00
896 278 0.08
897 66 0.02
898 176 0.05
901 151 0.04
902 33 0.01
903 347 0.10
904 618 0.18
905 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGGCCCCCTCGATCATGGAA
CCCCAATGTCGCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCT
CTGCGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCTGGTCTAATCTTAGAATGGGAATGAACT
CCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGCGGGCGAGCACTACGCCGACCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTAGGGATTTT
TTAAAATTTTTTTGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
Found at i:14157456 original size:26 final size:26
Alignment explanation
Indices: 14157427--14157479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14157417 CCGATCCGAT
*
14157427 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14157453 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14157479 C
1 C
14157480 CTAAGTCAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14158349 original size:26 final size:26
Alignment explanation
Indices: 14158313--14158365 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14158303 CCGATCCGAT
*
14158313 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
14158339 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
14158365 C
1 C
14158366 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:14159218 original size:26 final size:26
Alignment explanation
Indices: 14159189--14159238 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14159179 CCGATTTGAT
* *
14159189 CTTAGACTGGGAATGAACTTTGTACG
1 CTTAGACTAGGAATGAACTATGTACG
*
14159215 CTTAGACTAGGTATGAACTATGTA
1 CTTAGACTAGGAATGAACTATGTA
14159239 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTATGTACG
Found at i:14163178 original size:707 final size:705
Alignment explanation
Indices: 14161666--14163149 Score: 2238
Period size: 707 Copynumber: 2.1 Consensus size: 705
14161656 GTCCAATCTA
* * * * *
14161666 ATCTTAGATTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAATCAGCGGGCGGGCGGGCG
1 ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AA--A-CGAGCGAGC--G-G
* * * ** *
14161731 GGCAGTCACTACGCC-GACTAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGATGGTGGGTG
59 GAC-G-CACTACGCCAG-CCAGAGAGACGGGATGCGCAAGCCATAGATAAATAGGATGGTAGGTG
* *
14161795 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
121 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAA
* *
14161860 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
186 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
**
14161925 TTGAAACTTTTTATGGTTCTGAATTTTTTAAAATTTTTCGGAAGGAGTTTGGCCCCAAACTTGGT
251 TTGAAACTTTTTATGGTTCAAAATTTTTTAAAATTTTTCGGAAGGAGTTTGGCCCCAAACTTGGT
* * *
14161990 AGACGTGATCCTTGTATTTTTGTTGCCATGCATAAAAAAAATCAGCTAAAAATTCGAAGTGCACA
316 AGACATGATCCTTGTATTTTTGTTGCCATGCAAAAAAAAAATCAGCTAAAAACTCGAAGTGCACA
* *
14162055 AGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
381 AGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
14162120 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGG
446 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGG
* ** *
14162185 CCAATATAACGGCCAAGTACCAGCACCCATCGTATCATGTGCGCACAACCCCCCCGGGCCCCCGA
511 CCAATATAACGGCCAAGTAACAGCACCCATCACATCATGTGCGCACAACCCCCCCGGCCCCCCGA
* * * ** *
14162250 TCGTCGGAACCCCAATGCCGTCAGTTAAGTTCTCCGGTATACTCCGGCGATCGTACCCCGATGAA
576 TCGTCGGAACCCCAATGCCGCCAGTCAAGTTCTCAGGTATACTCCGGCGATAATACCCCGACGAA
* * * *
14162315 GAAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCG
641 GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGAGCTGCCGCAACCCTCAGTCTGGTCCG
* * * *
14162380 ATCTTAGAATTGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTAGGCA
1 ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGG-ACGCA
* * *
14162445 CTACGCCAGCTAGAGAGACGGGATGCGCAAGCCATGGATAAATAGGGTGGTAGGTGGGTTTAGGC
65 CTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATAGATAAATAGGATGGTAGGTGGGTTTAGGC
*
14162510 ACATCTTCATATTTCTACATGCCAATGGCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTT
130 ACATCTTCATATTTCTACATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTT
14162575 AAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
195 AAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
*
14162640 TTTATGGTTCAAAATTTTTTAAAATTTTTTCGGAAGGATTTTGGCCCCAAACTTGGTAGACATGA
260 TTTATGGTTCAAAATTTTTTAAAA-TTTTTCGGAAGGAGTTTGGCCCCAAACTTGGTAGACATGA
*
14162705 TCCTTGTATTTTTGTTGCCATGCAAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
324 TCCTTGTATTTTTGTTGCCATGCAAAAAAAAAATCAGCTAAAAACTCGAAGTGCACAAGATTTTG
* *
14162770 TGACCATTTGAAAAAAGTATCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
389 TGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
14162835 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-TGAGGTTTGATGAGGGATAGGGTGCCATTAT
454 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCT-AGGTTTGATGAGGGATAGGGGGCCAATAT
* *
14162899 AAGGGCCAAGTAATAGCACCCATCACACATCATGTGCGCACAACCCCCCCGGCCCCCCCGATCGT
518 AACGGCCAAGTAACAGCACCCAT--CACATCATGTGCGCACAACCCCCCCGG-CCCCCCGATCGT
* * *
14162964 CGGAACCCCAATGCCGCC-GATCAAGTTCTCTAGCG-ATACTTCGGCTATAATGCCCCGACGAAG
580 CGGAACCCCAATGCCGCCAG-TCAAGTTCTC-AG-GTATACTCCGGCGATAATACCCCGACGAAG
*
14163027 AAAAATACGGCACCAACACATGCCCGAGCCCAGTATGAGCTGCCGCAACCCTCAGTCTGGTCCG
642 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGAGCTGCCGCAACCCTCAGTCTGGTCCG
* * *
14163091 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
1 ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGG
14163150 CGCTCAGCTG
Statistics
Matches: 702, Mismatches: 58, Indels: 23
0.90 0.07 0.03
Matches are distributed among these distances:
706 207 0.29
707 245 0.35
708 1 0.00
709 26 0.04
710 44 0.06
711 136 0.19
712 1 0.00
713 2 0.00
714 40 0.06
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (705 bp):
ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGACGCAC
TACGCCAGCCAGAGAGACGGGATGCGCAAGCCATAGATAAATAGGATGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTACATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTATGGTTCAAAATTTTTTAAAATTTTTCGGAAGGAGTTTGGCCCCAAACTTGGTAGACATGATC
CTTGTATTTTTGTTGCCATGCAAAAAAAAAATCAGCTAAAAACTCGAAGTGCACAAGATTTTGTG
ACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAC
GGCCAAGTAACAGCACCCATCACATCATGTGCGCACAACCCCCCCGGCCCCCCGATCGTCGGAAC
CCCAATGCCGCCAGTCAAGTTCTCAGGTATACTCCGGCGATAATACCCCGACGAAGAAAAATACG
GCACCAACACATGCCCGAGCCCAGCATGAGCTGCCGCAACCCTCAGTCTGGTCCG
Found at i:14163927 original size:26 final size:26
Alignment explanation
Indices: 14163891--14163943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14163881 CCGGTTCAAT
* *
14163891 CTTAGATTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14163917 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14163943 C
1 C
14163944 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14165684 original size:26 final size:26
Alignment explanation
Indices: 14165655--14165707 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14165645 CTGGTCCGAT
* *
14165655 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14165681 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14165707 C
1 C
14165708 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14167448 original size:26 final size:26
Alignment explanation
Indices: 14167409--14167459 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14167399 AGCCCGATCC
*
14167409 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
14167435 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14167460 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14168346 original size:26 final size:26
Alignment explanation
Indices: 14168308--14168358 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14168298 GGTCTGATCA
14168308 TAGACTGGAAATGAACTCCATATGCT
1 TAGACTGGAAATGAACTCCATATGCT
* *
14168334 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGAAATGAACTCCATATGC
14168359 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCATATGCT
Found at i:14168752 original size:898 final size:896
Alignment explanation
Indices: 14166538--14171192 Score: 5794
Period size: 898 Copynumber: 5.2 Consensus size: 896
14166528 CCGGTCCGAT
* * * *
14166538 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14166603 CGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCG-GCTGGGTCCCCCTCTGCGTGCTATCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-AGGTCCCCCTCTGCGTGCTACCGATC
* * * * * * *
14166667 CTACTGTCATAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
130 CTGCTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14166732 ACCGACGAAACGAGCGGGCGGGCGGGTGGTTGGGCACTACGTCAGCCAGAGAGACGGGATGTGCA
195 ACCGACGAAACGAGCGAGCGGGC--G-GG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * * *
14166797 AGACGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATATTCTTATTTCTACGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
14166862 ATTTTTCTGGATTGTAAATTCATACAATGGTCCTTTAAGCGTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14166927 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
14166992 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTATTGGCATGCA-AAA
450 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14167056 CACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 -AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14167121 TCAGACACTTGAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * * *
14167186 AGTTCTGGAGGTTTGATGGGGGATACGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACAG
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14167251 ATAATGTGCGCACA-------CCCCCCCAATTGCCGGAACCCCAATGCCGTCGATCAGGTTCTCC
709 ATCATGTGCGCACACCCCCCGCCCCCCCAATCGCCGGAACACCAATGCCGTCGGTCAGGTTCTCC
* * * * * *
14167309 -AGCGATGCTCCGGAGATGGTGCCCCGATGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCA
774 GA-TGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGG-CCCAGCACATGCCCGAGCCCA
* * * * * * * *
14167373 GCATGTGCTGTCACAACCCTTGATCCAGCCCGATCCTAGACTGGGAATGAACTTCGTATG
837 GCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* *
14167433 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
14167498 CAGCCAGAGGGGCGGGATGCGCAAGTTGGGGATCGATCAAGTCCCCTTCTGCGCGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTACCGATCC
* * *
14167563 TGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAA
131 TGCTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * **
14167628 CTTACGAAACGAGCG-GACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGACATGCGCAAGCC
196 CCGACGAAACGAGCGAG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
14167692 GTGGATCGATAGGGAGGTAGGTGCGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
14167757 TTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
14167822 TCGTTTTTTACTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTGTAAAATTTTTTCGA
390 TCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* * *
14167887 AAGGAGTTTTGGCCCCAACCTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
14167952 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGGGACCATTTTAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
14168017 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14168082 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
14168147 GTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACACCAATGCCGTCGGTCAGGTTCTCCGATG
714 GTGCGCACACCCCCC-GCCCCCCCAATCGCCGGAACACCAATGCCGTCGGTCAGGTTCTCCGATG
* * *
14168212 ATGCTTCGGCGATGGTGCCCCGACAAAGAAAAACGCGGCCTCAGCACATGCCCAAGCCCAGCATG
778 ATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCC-CAGCACATGCCCGAGCCCAGCATG
* * * * * *
14168277 TGCTACCGAAACCCTCGGTCCGGTCTGATCATAGACTGGAAATGAACTCCATATG
842 TGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
*
14168332 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14168397 CGGCCAGAGGGGTGGCATGCGCAAGCTGGGGATCGATC-GGTCCCCTTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTACCGATCC
* * *
14168461 TGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
14168526 CTTACGAAACGAGCGAGTGGGCGGGCAGGCACTACGTCGGCCAGGGAGATGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
14168591 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
14168656 TATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** **
14168721 CGTTTTCTATTTTTCATGATTTTGAAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCGAA
391 CGTTTTCTATTTTTCACGATTTTG-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* *
14168786 AGTAGTTTT-GCCTCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
455 AGGAGTTTTGGCC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
**
14168850 TTCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14168915 CACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14168980 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** * * * * *
14169045 GTGCGCAGACCCCCCCGGCCCCCCTCTCCCCGAAAC-CCTAATGCCGCCGGTTAGGTTCTCCGAC
714 GTGCGCACA-CCCCCCGCCCCCCCAATCGCCGGAACACC-AATGCCGTCGGTCAGGTTCTCCGAT
* * * * * **
14169109 GATGC-TCAGGTGATAGTGACCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGTAGCA
777 GATGCTTC-GGCGATGGTGCCCCGACGAAGAAAAATGCGGC-CCAGCACATGCCCGAGCCCAGCA
* * * *
14169173 TGTGGTGTCGCAACCC-AGGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 TGTGCTGCCGCAACCCTCGG-TCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* ** *
14169230 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
14169295 CGGCCAGA-GGGTGGGATGCGCAAGTCGGGGATCGGTCAGGTCCCCCTCTGTTTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
14169359 TACTGCCACAACCCTCAGTTTGGTTCGATCTTAGACTGGGAATGAACTACATATGCCTAAGCCAA
131 TGCTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
14169424 CCGAAGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAGGCTA
196 CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
14169489 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
14169554 TATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
14169619 TGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTTGTGATTTTTTAAAATTTTTTCGGA
391 CGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* * * * * *
14169684 AGGATTTTTTGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTTTTGGCATGCACAAAGAAAT
455 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
14169749 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
520 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
14169814 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCT
585 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
14169879 CGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATG
650 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
14169944 TGCGGACACCCCCCTCAGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTACCCTAATGCCACC
715 TGCGCACACCCCCCGC--CCCCCCAATCGCCGGAACACCAATG-C--C-G--------T-----C
* * ** * * *
14170009 GGTCAGGTTCTCCGGTGATGCTTCAGCGATGGTGCCATGGCGAAGAAAAATGTGGCACTAGCACA
761 GGTCAGGTTCTCCGATGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC-CCAGCACA
* * *
14170074 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCTGATCTTCGACTGGGAATGAACT
825 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT
14170139 CCATATG
890 CCATATG
* * *
14170146 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
14170211 CAACTAGAGGGGCGGGATTGC-CAAACCAGGGATCGATCGGGTCCCCCTCTGCGTACTGCCGATC
66 CGGCCAGAGGGGCGGGA-TGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTACCGATC
*
14170275 CTGCTGCCACAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14170340 ACCGACGAAATGAGCGGGAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAAACGGGATGCGCA
195 ACCGACGAAACGAGC--GA--GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
14170405 AGCCGTGGATTGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * * *
14170470 ATTTTTATGACATGTAAAATCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
14170535 CGACTCATTTTCTATTTTTCACAATTTTGACAACTTTTAACGGTTCGGGATTTTACTAAAAATTT
386 CGACTCGTTTTCTATTTTTCACGATTTTGA-AACTTTTTACGGTTCGGGATTTT-TTAAAATTTT
* * *
14170600 TT-GAAAAGGAGGTTTTGTGCCCC-AACTTTTGGTAAGACAATGAT-CTTGAATTTCTTTTTTGG
449 TTCG-AAAGGA-GTTTTG-GCCCCAAAC--TTGGT-AGAC-GTGATCCTTGTA-TT-TTTGTTGG
* * * * * *
14170662 CATGCATAAAAAAATTTAGCTCAAAAACTCGAACTATATTAAGATTTTGTGACCATTAGAAAAAA
505 CATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTA-CAAGATTTTGTGACCATTTGAAAAAA
* * *
14170727 TTGTCCCTCCA-TTCAGACAACTTCTAAAGGCTTACTGGCAGC-AACCTGTAAAATCTCAAATAC
568 GTGT-CC-CCATTTCAGAC-ACTT-TAATGGC-TACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
14170790 -CTTTAAAGGGGGGGTGAGTTCTTGAAGGTTTGATGAGGGA-AGGGGGCCAATATAAGGGCCAAG
628 TCTTT-AAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * ** *
14170853 TACCAGTACCCATCGCACATCATATGCGTATACCCCCCGCCCCCCCAATCATCGAAAC-CCTAAT
691 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGCCGGAACACC-AAT
* * * * *
14170917 ---GTC-GTC-GG---T--AATG-TTCTTCGGC-AGTGGTGCCCAGTGAGGAA-AAATATG-GTG
755 GCCGTCGGTCAGGTTCTCCGATGATGCTTCGGCGA-TGGTGCCC--CGACGAAGAAAAATGCG-G
* * ** * * ** * *
14170968 CCGA-CACATTCCCGATTCCAACATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGA
816 CCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGG
* *
14171032 GAATGAATTCCATATC
881 GAATGAACTCCATATG
* * * *
14171048 CTTAGACTGGGAATGAAC-CTCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
14171112 CCGGCCAGAGGGGCGGGATGTGTAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGGGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTACCGATC
14171177 CTGCTGCCACAACCCT
130 CTGCTGCCACAACCCT
14171193 CGGCCTAGTT
Statistics
Matches: 3287, Mismatches: 394, Indels: 151
0.86 0.10 0.04
Matches are distributed among these distances:
891 449 0.14
892 5 0.00
893 1 0.00
894 1 0.00
895 184 0.06
896 1 0.00
897 45 0.01
898 1319 0.40
899 267 0.08
900 4 0.00
901 3 0.00
902 187 0.06
903 18 0.01
904 10 0.00
905 5 0.00
906 1 0.00
909 2 0.00
910 3 0.00
911 1 0.00
916 178 0.05
917 116 0.04
918 3 0.00
919 1 0.00
920 5 0.00
921 200 0.06
922 15 0.00
923 7 0.00
924 6 0.00
925 5 0.00
926 9 0.00
927 6 0.00
928 26 0.01
929 14 0.00
930 29 0.01
931 27 0.01
932 11 0.00
933 99 0.03
934 24 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGCCCCCCCAATCGCCGGAACACCAATGCCGTCGGTCAGGTTCTCCGATGATG
CTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCCCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:14169233 original size:26 final size:26
Alignment explanation
Indices: 14169204--14169256 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14169194 CCAGTCCGAT
*
14169204 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14169230 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14169256 C
1 C
14169257 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14172707 original size:26 final size:26
Alignment explanation
Indices: 14172671--14172723 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14172661 CCCGCCCGAT
* *
14172671 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14172697 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14172723 C
1 C
14172724 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14174540 original size:710 final size:708
Alignment explanation
Indices: 14172827--14174627 Score: 2634
Period size: 715 Copynumber: 2.5 Consensus size: 708
14172817 ATGCTGATCC
*
14172827 TGCTGTCGCAACCCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14172891 ACCGACGAAACGAATCGACGGGCGGACGGGTGGGTACTACGTCGGCCAGAGAGACAGGATGCGTA
65 ACCGACGAAACG-AGCGGCGGGCGGA-GGGCGGGCACTACGTCGGCCA-AGAGACAGGATGCGTA
* * * *
14172956 AGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTACGTGTCAATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
14173021 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTTATGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14173086 CGACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTTTACGGTT-TGAGATTTTTTAAAA-TTT
257 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTT
*
14173149 TTTGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
321 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14173214 AACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTCGAAAAAAGTGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTCGAAAAAAATGTCCCCATT
* * * * *
14173279 TCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGTGTGA
451 TCAGACAATTTAATAGCTACTGGCAGCAAACCTGTAAAATCTAAAATACTCTTTAAGGGGTGTCA
*
14173344 GTTCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACA
516 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACA
* * *
14173409 TCATGTGCCTACACCCCTTGGCCCCCCGGATCATCGGAACCCCAATGCCGCCGGTTAGGTTCTCC
581 ACATGTGCCTACACCCCTGGGCCCCCCGGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
14173474 GATGGTGCTCCGACGATGGCGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCAAGC
646 ---GGTG--CCGACGATGGCGCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCAAGC
14173539 ATG
706 ATG
* * * * * *
14173542 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14173607 CCAACGAAACGAGTGGACGGGCAGGCGGGCGGGCACTATGCCGGCCAAAGAGGC-GAGATGCGCA
66 CCGACGAAACGAGCGG-CGGGC-GGAGGGCGGGCACTACGTCGGCC-AAGAGACAG-GATGCGTA
* *
14173671 AGCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATCTCTGCATGCCAATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
14173736 ATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
14173801 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
257 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* * ** *
14173866 TTGGCAGGCGTTTTGGCCCTGAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
322 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14173931 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTCGAAAAAAATGTCCCCATTT
* *
14173996 TAGACAATTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTCA
452 CAGACAATTTAATAGCTACTGGCAGCAAACCTGTAAAATCTAAAATACTCTTTAA-GGGGTGTCA
*
14174061 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACA
* *
14174126 ACATGTGCGC-ACACCCCGTAAGGGCCCCCC-GATCGTCGGAACCCCAATGCCGCTGGTCAGGTT
581 ACATGTGC-CTACACCCC-T--GGGCCCCCCGGATCATCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
14174189 CTCC-G-G-CGATGGT-GC-CCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCA
642 CTCCGGTGCCGACGATGGCGCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCAAGCA
14174249 TG
707 TG
* ** *
14174251 TGCTGCCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGATTTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
14174316 CCGACGAAACGAGCAGGCGGGCGGGAGAGGCGGGCACTACATCGGCCTAAGAGACAGGATGCGTA
66 CCGACGAAACGAGC-GGCGGGC-GGAG-GGCGGGCACTACGTCGGCC-AAGAGACAGGATGCGTA
*
14174381 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
14174446 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGG
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
14174511 TGACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTCTAAAATTTTT
257 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* * *
14174576 TCGAAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
322 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
14174628 GACCATTTGA
Statistics
Matches: 971, Mismatches: 100, Indels: 35
0.88 0.09 0.03
Matches are distributed among these distances:
709 118 0.12
710 260 0.27
711 6 0.01
714 4 0.00
715 276 0.28
716 178 0.18
717 85 0.09
718 2 0.00
719 34 0.04
720 8 0.01
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (708 bp):
TGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGGAGGGCGGGCACTACGTCGGCCAAGAGACAGGATGCGTAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTCGAAAAAAATGTCCCCATTTCAGA
CAATTTAATAGCTACTGGCAGCAAACCTGTAAAATCTAAAATACTCTTTAAGGGGTGTCAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACAACATG
TGCCTACACCCCTGGGCCCCCCGGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGC
CGACGATGGCGCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCAAGCATG
Found at i:14176213 original size:862 final size:860
Alignment explanation
Indices: 14174622--14177624 Score: 3748
Period size: 862 Copynumber: 3.4 Consensus size: 860
14174612 ATCCTTGTAT
* *
14174622 TTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGAAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
14174687 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-
* *
14174752 ATATAAGGGCCAAGTACCAGCTCCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATC
130 ----AA--GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
** * * * *
14174817 ACCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGGCAATGCTCCGACGATGGTGCCCCGATGAAG
189 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAG
* * ** *
14174882 AAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCAATCCGGTCTGA
254 AAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTCCGGTCGGA
* * * * *
14174947 TC-TCAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTCA
319 TCATCAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGCACTCA
* * *
14175011 GCCGGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTTCTGCCGAT
384 GCCGGCCAGAGGGGCGGGATGCACAAGCC-GGGATCGA-CAGGTCCCCCTCTGCGTGCTGCCGAT
** * * * *
14175076 CCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAAGTCCCTATGCCTAAGCC
447 CCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
14175141 AACCGATGAAACGAACGGGTGGGCGGGTGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAG
512 AACCGATG-AACGAGC-AGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
**
14175205 TAATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
574 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* * * *
14175270 TTTTATGGCTTGTAAATTCACACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATTGCAAGACG
639 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
14175335 GCTCGTTTTCTATTTTTCACGATTTTCCAAATGTTTTACGATTTGAAATTTTTTAAAATTTTTTT
704 GCTCGTTTTCTATTTTTCACGATTTTCCAAAT-TTTTACGATTCGAGATTTTTTAAAATTTTTTC
* **
14175400 GGATGAGTTTTTACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
768 GGAAG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
14175465 AATCAGCCAAAAACTCGAAGTGTACAAGA
832 AATCAGCTAAAAACTCGAAGTGTACAAGA
14175494 TTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG-TACTGGCAGCAAACC
1 -TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
14175558 AGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG-C
65 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14175622 -A-CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGA
130 AAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGA
* * * * * *
14175685 ACCCCAATGCCGTCGGTCAGGCTCTCCAACGATTCTCCGGCGATAGTGCCTCGATGAAGAAAAAT
195 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
* * *
14175750 ACGACACCAGCACATGCCCGAGCCCGGCATGTGCTGCCCCAACCCTCTGTCTGGTCGGATCAT-A
260 ACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTCCGGTCGGATCATCA
* * **
14175814 GACTATGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGTGTGCGATCACTCAGCCGGC
325 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGCACTCAGCCGGC
*** * ** * * * *
14175879 CAGAAATGAGGGATGTGCAAGTCGAGGATCAACTGGTTCCCCCTCTGCGTGCTACCGATCCTGCT
390 CAGAGGGGCGGGATGCACAAGCCG-GGATCGACAGG-TCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * *
14175944 GCCACAACCCTCGGTCCACTCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGA
453 GCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
14176009 TGTAACGAGCAGACGGGCAGGCGGGCACTACGCTGGCCAGAGAAACGGGATGCGTAAGCCATGGA
518 TG-AACGAGCAG-CGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGA
* *
14176074 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCACTGCCATTTTTATG
581 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
*
14176139 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGGCTCGTT
646 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTT
* * * *
14176204 TTTTATTTTTCACTATTTTCTAAATATTTTGC-AGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
711 TTCTATTTTTCACGATTTTCCAAAT-TTTTACGA-TTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * * *
14176268 CATTTTGGCCCTAAATTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAATATCA
774 --TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCA
14176333 GCTAAAAACTCGAAGTGTACAAGA
837 GCTAAAAACTCGAAGTGTACAAGA
* *
14176357 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGTAGCAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* ** *
14176422 GTAATATCTCAAACACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-
* *
14176487 ATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCACTCCCCCCGGCCCCCCCGATC
130 ----AA--GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * **
14176552 GTCGAAACCCAAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAG
189 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAG
* * * * * *
14176617 AAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTACTGCTGCAACCCTCGGTCCAGTTCGA
254 AAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTCC-G---G-
* * *
14176682 TCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACC
314 ---T---C---G---G-A-T-C--AT-C--AGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * * *
14176747 CACTAAACGAAAGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATACACAAGCCGGGGTCGGCCA
359 CACAAAACGAGTGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGATC-GACA
* * * * * * *
14176812 GGACACCCTCTACGTGTTGCCGATCCTGCTGGCACAACCCTCGGTCCAGTCCGATCTTAGACTTG
423 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGG
* *
14176877 GAATGAACTCCGTATGCCTAAGCCAACCGACGAA--ATG-AGCGGGCGGGCGGGCACTACGCCGG
488 GAATGAACTCCGTATGCCTAAGCCAACCGATGAACGA-GCAGCGGGCGGGCGGGCACTACGCTGG
* * *
14176939 CCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCA
552 CCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * **
14177004 TATTTTTGCATGCCAATGATATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
617 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * ** *
14177069 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
682 CGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCACGATTTTCCAAA-TTTTTACGATT
* *
14177134 CGAGATTTTTCAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTA
746 CGAGATTTTTTAAAATTTTTTCGGAA--GGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
14177199 TTTTTGTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
809 TTTTTGTTGGCATGCACAAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGA
* * * * * *
14177251 TTTTGTGACCATTTGAAAAAGGTGTCCCTATTTCAGACACTTTAATGACTATTGGTAGCAAACTT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
14177316 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-
* * *
14177380 ATATAATGGCCAAGTACCAGCACCCATCGCACATAATGTGCGTACACCCCCCCCCCGGCCCCCAC
130 ----AA--GCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA--CACCCCCCGGCCCCCCC
* * * *
14177445 GATCGTCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGAT
185 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAT
* * * * * *
14177510 AAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGT
250 GAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTCCGGT
** * * *
14177575 CCAATC-TTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAA
315 CGGATCATCAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA
14177625 TGAGCGGGAG
Statistics
Matches: 1846, Mismatches: 228, Indels: 114
0.84 0.10 0.05
Matches are distributed among these distances:
861 7 0.00
862 597 0.32
863 152 0.08
864 1 0.00
865 1 0.00
870 1 0.00
871 37 0.02
872 73 0.04
873 203 0.11
874 2 0.00
877 2 0.00
878 1 0.00
879 1 0.00
881 1 0.00
884 1 0.00
886 1 0.00
887 1 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 55 0.03
894 404 0.22
895 8 0.00
896 4 0.00
897 129 0.07
898 86 0.05
899 74 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (860 bp):
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
AGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATA
CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTCCGGTCGGATCATCAG
ACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGCACTCAGCCGGCC
AGAGGGGCGGGATGCACAAGCCGGGATCGACAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
ACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
ACGAGCAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTA
TTTTTCACGATTTTCCAAATTTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAAC
TCGAAGTGTACAAGA
Found at i:14176719 original size:26 final size:26
Alignment explanation
Indices: 14176683--14176735 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14176673 CCAGTTCGAT
14176683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14176709 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14176735 C
1 C
14176736 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14178619 original size:727 final size:706
Alignment explanation
Indices: 14176838--14179029 Score: 2973
Period size: 717 Copynumber: 3.1 Consensus size: 706
14176828 TTGCCGATCC
* ** * * * *
14176838 TGCTGGCACAACCCTCGGTCCAGTCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAA
* ** * *
14176903 CCGACGAAATGAGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCG
66 CCGACAAAATGAGCGGGAGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCG
* *
14176964 TGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATG--ATATT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCA-ATT
14177027 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
14177092 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTCAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT-AAAATTTTTTCG
* * * *
14177157 GAAGGGGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
324 GAA-GGTTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
14177222 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCTATTTCAG
388 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
14177287 ACACTTTAATGACTATTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
453 ACACTTTAATGACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
14177352 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATAA
518 CTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * **
14177416 TGTGCGTACACCCCCCCCCCGGCCCCCACGATCGTCAGAACCCCAATGCCGCCAGTCAGGTTCTC
583 TGTGC--ACA----CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATACCGCTGGTCAGGTTCTC
* ** * *
14177481 CGACGATGCTCTGACGATGGTGCCCCGATAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
641 CG--GATGCTCCG--GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
14177546 GCATG
702 GCATG
* * * * *
14177551 TGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAA
* * *
14177616 CCGACAAAATGAGCGGGAGGGCGGGCGAGCACTACATCGCCCAGAGAGGCGGGATGCGCAAGCCG
66 CCGACAAAATGAGCGGGAGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCG
*
14177681 TGGATCGATAGGGTGGTAGGTGGGTTTA-GTCACATCTTCATATTTCTGCATGCCAGTGCC-ATT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGT-ACATCTTCATATTTCTGCATGCCAATGCCAATT
* * * *
14177744 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATCAAGTATCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14177809 CTCGTTTTCTAATTTTCATGATTTTTGAAAATTTTTGTC-GTTCAGGATTTTTTAAAATTTTTTC
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGA-TTTTTAAAATTTTTTC
*
14177873 GGAAGGTGTTTCT-GCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAAA
323 GGAAGGT-TTT-TGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAA
*
14177937 AAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
386 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14178002 AGACACTTTAATGACAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
451 AGACACTTTAATGACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** *
14178067 TTCTTGAGGTTTGATGTTGGATAGGGGGCCAATATACGGGCCACA-TACCAGCACCCATCGCACA
516 TTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACA
14178131 TCATGTGCACACACCTCACCGGCCCACCCGATCG-CTGGAACCCCAATACCGCTGGTCAGGTTCT
580 TCATGTGCACAC-CC-C-CCGGCCC-CCCGATCGTC-GGAACCCCAATACCGCTGGTCAGGTTCT
* *
14178195 CCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAAAACGGCACCAGCACTTGCCCGAGCCC
640 CC-G-GATGCTCC-G-GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
14178260 AGCATG
701 AGCATG
* *
14178266 TGCTGCCACAACCCTCGGTCTGGTCCGATCCTAGACTGGGAATGAACTCCATATACCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAA
*
14178331 CCGACGAAACGAGCAAGCGGGTGAGCGGGTGGGCGGGCGGGCACTACATCGACCAGAGAGACGGG
66 CCGAC---A--A--AA-----TGAGCGGGAGGGCGGGCGGGCACTACATCGACCAGAGAGACGGG
* *
14178396 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTTATATTTCTGCATTC
119 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGC
* *
14178461 CAATGCCAAATTTT-TGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
184 CAATGCCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
14178525 TGGCAAGACAACTCGTTTTCTGTTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTCTTTA
249 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT-TTTA
*
14178590 AAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCA
313 AAATTTTTTCGGAAGG-TTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCA
* * * *
14178655 TTCACAAAAAAA-TCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAACGTGT
377 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
14178719 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTC-TTAAGG
442 CCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGG
*
14178783 GGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGG-CAAGTACCCACCA-C
507 GGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACC
* *
14178846 CATCGCACATCATGT-CGCACCCCCCGG-CCCCCGATCGTTCGGAACCCAAATACCG-TCGGTCA
571 CATCGCACATCATGTGCACACCCCCCGGCCCCCCGATCG-TCGGAACCCCAATACCGCT-GGTCA
* *
14178908 GGTTCTCC-G--G---C-GATGGTGCCCCAACGAAGAAAAATATGGCACACCAGCACATGCCCGA
634 GGTTCTCCGGATGCTCCGGATGGTGCCCCGACGAAGAAAAATACGG--CACCAGCACATGCCCGA
14178966 GCCCAGCATG
697 GCCCAGCATG
*
14178976 TGCTGCCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCATAT
1 TGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATAT
14179030 GATTAGACTG
Statistics
Matches: 1323, Mismatches: 111, Indels: 93
0.87 0.07 0.06
Matches are distributed among these distances:
708 25 0.02
710 77 0.06
711 1 0.00
712 1 0.00
713 75 0.06
714 3 0.00
715 158 0.12
716 11 0.01
717 403 0.30
718 60 0.05
719 30 0.02
720 6 0.00
721 1 0.00
722 4 0.00
723 5 0.00
724 20 0.02
725 55 0.04
726 107 0.08
727 273 0.21
728 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (706 bp):
TGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAA
CCGACAAAATGAGCGGGAGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCAATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTCGGA
AGGTTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATACCGCTGGTCAGGTTCTCCGGATGCTCC
GGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:14179035 original size:26 final size:26
Alignment explanation
Indices: 14179006--14179056 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14178996 TGGTCCAATC
14179006 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
14179032 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
14179057 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:14179950 original size:26 final size:26
Alignment explanation
Indices: 14179910--14179962 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14179900 CCGATCTGAT
14179910 CTTAGACTGGAAATGAACT-TCGTATG
1 CTTAGACTGGAAATGAACTCT-GTATG
*
14179936 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
14179962 C
1 C
14179963 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:14180301 original size:900 final size:887
Alignment explanation
Indices: 14178266--14180978 Score: 3625
Period size: 888 Copynumber: 3.0 Consensus size: 887
14178256 GCCCAGCATG
* * * * * *
14178266 TGCTGCCACAACCCTCGGTCTGGTCCGATCCTAGACTGGGAATGAACTCCATATACCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14178331 CCGACGAAACGAGCAAGCGGGTGAGCGGGTGGGCGGGCGGGCACTACATCGACCAGAGAGACGGG
66 CCGAC---A--A--AA-C----GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
* *
14178396 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTTATATTTCTGCATTC
119 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGC
* *
14178461 CAATGCCAAATTTT-TGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
184 CAATGCC-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
14178525 TGGCAAGACAACTCGTTTTCTGTTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTCTTTA
248 TGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTA
*
14178590 AAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCA
313 AAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
14178655 TTCACAAAAAAA-TCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAACGTGT
378 TTCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
14178719 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTC-TTAAGG
443 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
14178783 GGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGG-CAAGTACCCA-CCAC
508 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCAAC
* *
14178846 CATCGCACATCATGT-CG--CACCCCC-CGG-CCCCCGATCGTTCGGAACCCAAATACCGTCGGT
572 CATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCGATCG-TC-GAACCC-AATGCCGCCGGT
* *
14178906 CAGGTTCTC-CGG-CGATGGTGCCCCAACGAAGAAAAATATGGCACACCAGCACATGCCCGAGCC
634 CAGGTTCTCTCGGTCGATGGTGCCCCAGCGAAGAAAAATGTGG--CACCAGCACATGCCCGAGCC
* * * * *
14178969 CAGCATGTGCTGCCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGATT
697 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
14179034 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAAATGAGCGTGCGGGCGCTCAGCCG
762 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
14179099 GCCAGAGGGGCAGTATGCGCAAGCCGGCGATCGACCGGGTCCCCCTTTGCATGCTACCGATCC
826 GCCAGAGGGGCAGGATGTGCAAGTCGGGGATCGACCGGGTCCCCCTTTG-ATGCTGCCAATCC
* * * * *
14179162 AGCTGCCACAACCCTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAA
1 TGCTGCCACAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** * *
14179227 CCGACAAAATGAACGGGCGGACGGGTGGATGGGCACTACGCCGGCTTGAGAGACGGCATGCGCAT
66 CCGACAAAACGAGCGGGCGG--GCG-GG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
14179292 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCA
* *
14179357 TTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
14179422 GACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * * * * * **
14179487 CGGATGGAGTTTTAGCCCCAAACATGGTAGACGGGATCCTTGCATTTTTGTTGGCATTTGCAAAA
322 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATTCACAAAA
*
14179552 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14179617 AGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
14179682 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACAT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACAT
* *
14179747 CATGTGCGCACACCCCCCTCGGCCCCCTCGATTGTCTG-ACCCTAATGTCGCCGGTCAGGTTCTC
582 CATGTGCGCACA-CCCCCTCGGCCCCC-CGATCGTC-GAACCC-AATGCCGCCGGTCAGGTTCTC
*
14179811 TGACGATGCTCCGGTAATGGTGCCCCAGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
643 T--CG--G-T-C-G--ATGGTGCCCCAGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * * * * * * *
14179876 ACATTTGTTCCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTTCGTATGCTTAG
699 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
14179941 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGTGCACTCAGCCGGCC
764 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCC
*
14180006 AGAGGGGCAGGATGTGCAAGTCGGGGATCGATCGGGTCCCCCTCTATG-TGCTGCCAATCC
829 AGAGGGGCAGGATGTGCAAGTCGGGGATCGACCGGGTCCCCCT-T-TGATGCTGCCAATCC
* *
14180066 TGCTACCGCAACCCTCAGTCTGG-TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCACAACCCTCAGTCTGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14180130 ACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCC
65 ACCGACAAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* *
14180195 GTGAATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
14180260 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** *
14180325 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAAAGTTTGGGATTTTTGAAAATTTTTTCGG
260 TCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGG
* * * * * *
14180390 AGGGTTTTTTGGCCCGAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAA
325 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATTCACAAAAAAA
* * *
14180455 TCCAAG-TAAAAACTCGAAGTGTACAAGATTTGGTGACCATTTGAAAAATGTGTCCCCATTTCAG
390 TTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
14180519 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATTTCAAATGCTCTTTAA-GGGGTGTGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
14180583 CTTGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCA
519 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCA
*
14180648 TGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGAAACGCCAATGCCGCCGGTAAGGTTCTCT-G
584 TGTGCGCACACCCCCTCGG-CCCCCCGATCGTCG-AAC-CCAATGCCGCCGGTCAGGTTCTCTCG
* * **
14180712 GT-GATGGTGCCCC-GACGAAGAAAAATGCGGCACC-GACGCATGCCCGATTCCAGCATGTGCTG
646 GTCGATGGTGCCCCAG-CGAAGAAAAATGTGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTG
* * * *
14180774 CCGCAACCTTCGGTCTGGT-TCAATCATAGATTGGGAATGAACTCCGTATGCTTAGACTTGGAAT
709 CCGCAACCCTCGGTCTGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * **
14180838 GAACTCCGTATGCCTAAGTCAACCCACGAAACAATCGTGCGGGCGCTCAGCCGGCCAGAGGGGTG
773 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
* * * *
14180903 GGATGTGTGTAAGTCGAGGATCGACCGGGTCCACATTTGCATGCTGCCAATCC
838 GGA--TGTGCAAGTCGGGGATCGACCGGGTCCCCCTTTG-ATGCTGCCAATCC
14180956 TGCTGCCACAACCCTCAGTCTGG
1 TGCTGCCACAACCCTCAGTCTGG
14180979 CACTACGCCG
Statistics
Matches: 1596, Mismatches: 179, Indels: 90
0.86 0.10 0.05
Matches are distributed among these distances:
884 8 0.01
886 2 0.00
887 10 0.01
888 423 0.27
889 107 0.07
890 116 0.07
891 25 0.02
892 2 0.00
893 2 0.00
894 3 0.00
895 5 0.00
896 87 0.05
897 8 0.01
898 21 0.01
899 112 0.07
900 376 0.24
901 5 0.00
902 2 0.00
903 2 0.00
904 146 0.09
905 108 0.07
906 2 0.00
907 24 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TGCTGCCACAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATTCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATG
TGCGCACACCCCCTCGGCCCCCCGATCGTCGAACCCAATGCCGCCGGTCAGGTTCTCTCGGTCGA
TGGTGCCCCAGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
CCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGTGC
AAGTCGGGGATCGACCGGGTCCCCCTTTGATGCTGCCAATCC
Found at i:14181676 original size:26 final size:26
Alignment explanation
Indices: 14181636--14181688 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14181626 TTGGTCCGAT
*
14181636 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
*
14181662 CTTAGACTGGAAATGATCTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
14181688 C
1 C
14181689 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:14183450 original size:26 final size:26
Alignment explanation
Indices: 14183412--14183464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14183402 CCGATTCAAT
* *
14183412 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14183438 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14183464 C
1 C
14183465 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14184326 original size:26 final size:26
Alignment explanation
Indices: 14184297--14184346 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14184287 GTCTGATCTG
*
14184297 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCCTATGCTT
14184323 AGACTGGGAATGAACTCCCTATGC
1 AGACTGGGAATGAACTCCCTATGC
14184347 CTGAGTTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCCTATGCTT
Found at i:14184860 original size:890 final size:889
Alignment explanation
Indices: 14180996--14185326 Score: 5437
Period size: 890 Copynumber: 4.9 Consensus size: 889
14180986 CCGGTGGGCA
* * * *
14180996 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAACTGAGGATCGATAGGGTGGTAGGTGGGTTT
1 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** *
14181061 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
14181126 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
131 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
** * ***
14181191 ACTTTTTACGGTTCGGGATTTCTTAAAATTTTTTTGGACCTAGTTTTGGCCCCAAACTTGGTAGA
196 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
14181256 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATG-TAAAAACTCGAAATGTACAAC
261 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCA-GCTAAAAACTCGAAGTGTACAAG
* ** *
14181320 ATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATAACTACTGGCAGCAAACT
325 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14181385 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
390 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14181450 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCAGGCCCCCCCGAT
455 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * * *
14181515 CGTCGGAACACCAATGCCGCAGGTCAGGTTCTCCGGCGATGGTGCCCTGACGATGAAAAATGCGG
520 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGCGATGGTGCCCCGACGAAGAAAAATACGG
* * * ** *
14181580 CACCAGCACATGCCCGAGGCTAGCATGTGCTGCCGTAACCCTCGGTTTGGTCCGATCTTAGACTG
585 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCTGATCTTAGACTG
* * * *
14181645 GGAATGAACTTCGTATGCTTAGACTGGAAATGATCTTCGTATGCCTAAGTCAACCCATGAAACGA
650 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* *
14181710 GCGTGC-GG-GCTCAGCCGGCCAGAGCGATGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCT
715 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCT
* * * * ** * **
14181773 CTACATACTGTCGATCCTACTGCCATAACCCTCGGTTTGGTCCTG-TCTTAGACTGGGAATGAAC
780 CTGCATGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGT-CTGATCTTAGACTGGGAATGAAC
* * *
14181837 TCCATATGCCTAAGCCAACCGATGAAACTAGCAGGCTGACGGCTGGGCG
844 TCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGA-GGC--GGCG
* ** *
14181886 GGCATTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTT
1 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** ** * **
14181951 AGAAACATCTTCATATTTCTATGTGCCAATGCCAATTTTACAGCTTGTAAATTCATACAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
14182016 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAA
131 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * ** * *
14182081 ACCTTTTATGGTTTC-AGAATTTTTAAAATTTTTTTTAAAGGCGTTTTGGCCCCAAAATTGGTAG
196 ACTTTTTACGG-TTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
14182145 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
260 ACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
14182210 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATATCAGACACTTTAATGGCTACTGGCAGCAAAC
324 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14182275 CTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGC
389 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
14182339 CAATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCCGA
454 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * *
14182404 TCGTCGGAACTCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACCA
519 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC--C---G---C---GATGGTGCCCCGACGA
* * * *
14182469 AGAAAAATACGGCACCAGCAAATGCCTGAGCCTAGAATGTGCTG-CGACAA-CC-C--T-C-G--
573 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGA-AACCCTCGGTCCGGTC
*
14182525 -G----T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
637 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * **
14182572 ACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGTATGCGCAAGTCGACGATCG
702 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCG
* ** * * *
14182637 GTCGGGTCCCCCTCTGCATGCTACCGATCCAGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGA
767 ATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGA
** *
14182702 CTGGGAATGAACT-CGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGACGAGCGGACG
832 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGA-G-GCGG-CG
*
14182762 GGCACTAC-TCCGGCCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGCACTACGT-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
14182826 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAGGGCATGAAAATTCATACAATGGC
65 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * * *
14182891 CCCCTAAGCCTTCACGTGATGTTTCACGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTCGA
130 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
*** ** * * *
14182956 AACTTTTTACGGTTTGGGATTTTTTTTAATTTTTTCGGATGGAGTTTTGG-CCCAAACATGGTAG
195 AACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14183020 ACGTGATCCTTGTATTTTTATTGGCATTTGC--AAAACAATTCAGCTAAAAACTCGAAGTGTACA
260 ACGTGATCCTTGTATTTTTGTTGGCA--TGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14183083 AGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
323 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14183148 CCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGG
388 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
14183213 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
453 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * *
14183278 ATCGCCAGAACCCCAATGCTGTCGGTCAGGTTCTCTGGTGATGCTCCGATGATGGTGCCCCGACG
518 ATCGTCGGAACCCCAATGCCGCCGGTCAGG-T-TC------T-C-CCG-CGATGGTGCCCCGACG
* ** ** * *
14183343 AAGAAAAATACGACACCAGCACATGGTCGAGCCCAATATGTGCTGCCGCAACCCTCGGTCCGAT-
572 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTC
* * *
14183407 TCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
637 T-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
14183472 AACCTATAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGCATGCACAAGTCGGGGATC
701 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATC
** * * * * *
14183537 GATCGGGTCCCCCTCTGTGTGCTGTCGATCTTGCTGCTGCAACCCTCAGTCCGATCTGATCTTAC
766 GATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAG
*
14183602 ACTGGGAATGAACTCCGTATGCTTAAGCCAACCGATGAAAC--G-A-GC----G-GGCG
831 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGAGGCGGCG
* * * * * *
14183652 GGCACTACGTCTGCCAAAGAGATGGGATGCGGAAGTCGTGGATCGATAGGATGGTAGGTGGGTTT
1 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
14183717 AGGCACATCTTCATATTTATACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
14183782 CATTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAA
131 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
14183847 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCGAAACTT-TTAAG
196 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT-AG
*
14183911 ACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
260 ACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14183976 GTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
325 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
**
14184041 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCC
390 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
14184106 AATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCACACAGCCCCACCGGGCCCTCCG
455 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCCCG
* * ** **
14184171 ATCGTCGGAACCCCAATTCCGCCGGTTAGGTTCTCCCGCGATGGTGCCCCGGTGAAGAAAAATGT
518 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGCGATGGTGCCCCGACGAAGAAAAATAC
* *
14184236 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCTGTCCGGTCTGATCTGAGAC
583 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCTGATCTTAGAC
* * * *
14184301 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCCTATGCCTGAGTTAACCTATGAAAC
648 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * *
14184366 GAGCGTGCGGGCGCTCAGTCGGCCAGAGGAGCGGGATGCGCAAG-CTGGGGATCGGA-CGGGTCC
713 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTC-GGGGATC-GATCGGGTCC
* * * * ** *
14184429 CCCTTTGCGTGTTGTCGATCCTGCTACCGTAACCCTCAGTTTGGTCTGATCTTAGACTAGGAATG
776 CCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG
*
14184494 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGC-G-GGCAGGTG
841 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGAGGC-GGCG
* *
14184542 GGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTT
1 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * **
14184607 AGACACATCTTCATATTTCTGCATGCCAATGATATTTTTATGGCTTGTAAATTCATACAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
**
14184672 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
131 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
14184737 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCGCAAACTTGGTAGA
196 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * *
14184802 CGTGATCCTTGTATTTTTTTTGGCTTGCATAAAAACATTCAGCTAAAAACTGGAAGTGTACATGA
261 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
14184867 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGACTACTGGCAGCAAACCT
326 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
14184932 GGAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCA
391 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* **
14184996 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCGTCGAT
456 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
** * * * *
14185061 CACCGAAACCCTAATGCCACCGGTCAGGTTCT-CCGACGATGCTCCAGCGATGCTCTAGCGATGG
520 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCG-CGA---T---G-G-TGC-C--CCGA---
14185125 TGTCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-ACAACCC
570 -----C---GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGA-AACCC
* * * * *
14185189 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACCGCGAATGGACTCTGTA
626 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * * * *
14185254 TGCCTAAGTTAACCCACGGAACGAGCGTG-TGGCGTTCAACCGACCAGAGGGGCGGGATGTGCAA
691 TGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAA
*
14185318 GCCGGGGAT
756 GTCGGGGAT
14185327 GTGCAAACAC
Statistics
Matches: 2983, Mismatches: 351, Indels: 195
0.85 0.10 0.06
Matches are distributed among these distances:
874 118 0.04
875 265 0.09
876 253 0.08
877 108 0.04
879 1 0.00
880 3 0.00
881 1 0.00
882 268 0.09
883 9 0.00
884 3 0.00
885 5 0.00
886 2 0.00
887 3 0.00
888 41 0.01
889 58 0.02
890 1016 0.34
891 359 0.12
892 7 0.00
893 35 0.01
894 1 0.00
895 3 0.00
896 4 0.00
897 2 0.00
898 3 0.00
899 6 0.00
900 7 0.00
901 209 0.07
902 23 0.01
909 36 0.01
910 134 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGCGATGGTGCCCCGACGAAGAAAAATACGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTC
TGCATGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGAGGCGGCG
Found at i:14185622 original size:26 final size:26
Alignment explanation
Indices: 14185582--14185634 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14185572 CCGATGCGAT
* *
14185582 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
14185608 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
14185634 C
1 C
14185635 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:14187477 original size:26 final size:26
Alignment explanation
Indices: 14187448--14187500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14187438 CCGATCTGAT
*
14187448 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14187474 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14187500 C
1 C
14187501 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14188545 original size:895 final size:888
Alignment explanation
Indices: 14186742--14190116 Score: 4445
Period size: 896 Copynumber: 3.8 Consensus size: 888
14186732 TTCTGATCCG
* *
14186742 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCA
1 ATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
** ** * * * *
14186803 CTACAACGGTGAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGCTTGGTTTAGGG
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
14186868 ACATCTTGATATTTCTGCATGCCAATGCCATTTCTGTGGCTTGTAAATTCGTACAATGGTCCCTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
14186933 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTT
** * * *
14186998 TTTAG-GGTTCGAAATTTTTTAAAATTTCTTCAGAAGGAG-TTTTGGCCCAAACTTGGTAGATGT
261 TTT-GCGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGAGTTTTTGGCCCAAACTTGGTAGACGT
* * * *
14187061 GATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTAGCTAAAAACTCAAAGTTTAGAAGATTT
324 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTT
* *
14187126 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGCA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* **
14187191 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAGGTTTGATAAGGGATAGGGGGATAATAT
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
14187256 AAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCTGACCCCCCGATCATCG
519 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCG
* ** * * * *
14187321 GAACCCCAATGCCGCC-GATCAGGTTCTCCGGTGATGTTCC-AGGGATGGTGCCCTGGCGAAGAA
584 GAACCCCAATGCCGCCAG-TAAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAA
* ** * * * * *
14187384 AAATGCGACACCAGCACATGCCTAAGCCCAGTATGTGCTGCCACAACCCTCGATCCGATCTGATC
647 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATC
* * *
14187449 TTAGACTGGGAATAAAC-TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
712 TTAGACTGGGAATGAACTTC-ATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCC
* * * * * * * * *
14187513 ATAAAATGAGCGTGCCGGCGCTCAATCGGCCAGAGGGGCGGGATGGGAAGGCTGAGGG-TCGGTC
776 A-CAAACGAGCGTG-TGGCGCTCAAACGGCTAGAGGGGCAGGAT-GCAAAGC--AGGGATCGATC
* * * * *
14187577 GGGTCCCCCTCTACGTGCTATCAATCCTACTGCCACAACCCTCTGT-TCGGTCTG
836 GGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCT-GGT-TC
* *
14187631 ATCTTAGACTGGGAATGAACTCCATATGCCTAA-CCAACCGACGAAATGAGCGGGCGGGCGGGCA
1 ATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* *
14187695 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTTGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
14187760 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
14187825 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-TATTTTCATGATTTTTGAAACT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT-TTTTCATGATTTTTGAAACT
* *
14187889 TTTTGCGGTTCGGGATTTTTTAAAAATTTTTTCGAAAGAGTTTTTGTG-CCAACCTTCGTAGACG
260 TTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGAAAGAGTTTTTG-GCCCAAACTTGGTAGACG
14187953 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATT
323 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATT
* *
14188018 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGTTACTGGCAGCAAACCTGT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
14188083 AAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
14188148 ATAAGGGCCAAGCACCAGCACCCATTGCATATCATGTGCGCACAACCCCCCGGCCCCCCCGATCG
517 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCA
* **
14188213 TCGGAACCCCAATGCCGCCAGTAAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGA
581 TCGGAACCCCAATGCCGCCAGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* * ** *
14188278 AAACTGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTGTTGTAACCCTCGGTCTGGTCTGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
14188343 CTTAGACTGTGAATGAACTTCATATGCTTAGACTGGGAATGAAGTCCGTAAGCCTAAGTCAACCC
711 CTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCC
*
14188408 ACGAAACGAGCGTGTGGGCGCTCAACCGGCTAGAGGGGCAGGATGCATAAGCCAGGGATCGATCG
776 AC-AAACGAGCGTGT-GGCGCTCAAACGGCTAGAGGGGCAGGATGCA-AAG-CAGGGATCGATCG
* * * *
14188473 GGTCCCCCTCTACATACTGTCGATCCTGCTGCCGCAAGCCTCAGTCTGGTTC
837 GGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCTGGTTC
* *
14188525 AATCTT-GCATTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGAG
1 -ATCTTAG-ATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* *
14188589 CACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAG
64 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
14188654 GCACATCTTCATATTTTTTCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCC
129 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
14188719 TTAAGCCTGCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTGAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
*
14188784 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAG-TTTTGGTCCCAAACTTGGTAGAC
259 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA-GAGTTTTTGG-CCCAAACTTGGTAGAC
* ** *
14188848 CTGATCCTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
322 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGAT
14188913 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
14188978 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGTTTGATGAGGGATAGGGGGCCAA
* * *
14189043 TATAAAGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACAACCCCCCGACCCCCCCGATC
516 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATC
* * * * * *
14189108 GTCAGAACCCCAATGCCGTCGGTAAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGATGAAG
580 ATCGGAACCCCAATGCCGCCAGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * *
14189173 AAAACTGCAGCACCAGCACATGCCCGAGCCCAGCACGTGCTGCTGCAACCCTCGGTCTGGTCCGA
645 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * *
14189238 TCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAA--
710 TCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACC
*
14189301 C-C---C-A-----T---G---AAAC-G-T--A-----A-GA--C--A--A-GGATCGATCGAGT
775 CACAAACGAGCGTGTGGCGCTCAAACGGCTAGAGGGGCAGGATGCAAAGCAGGGATCGATCGGGT
* * *
14189333 CCCCCTCTATGTGCTG-CTGATCCTACTGCCGCAACCCTTAGTCTGATCTC
840 CCCCCTCTACGTGCTGTC-GATCCTACTGCCGCAACCCTCAGTCTGGT-TC
* * * * * *
14189383 ATCTTAGATTGGGAATGAACTTCGTACGCCTAAGCCAACCAACAAAACGAGCGGACAGGTGGGCG
1 ATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC-G---GGCGGGCG
*
14189448 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
62 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
14189513 AGGCACATCTTCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
127 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
14189578 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAA
** * *
14189643 ACTTTTTGTTGTTCGGGATTTTTTAAAATTTTTTTTGAAAGA-TTTTTGGCCCCAAACTTAGCT-
257 ACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGAGTTTTTGG-CCCAAACTT-GGTA
* * * *
14189706 GATGAGACCCTTGTATTTTTGTTGGCATGCACAAAAAATTTTAGCTAAAAACTCGAAGTGTACAA
319 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAA
* * *
14189771 GATTTTGTGACCATTTGAAAAAA-TTTTCCCATTTCAGACACTCTAATGGCTACTGGCAGCAAAC
384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14189835 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCT-AGTAGTTTGATGAGGGATAGGGGG
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAG--GTTTGATGAGGGATAGGGGG
* *
14189899 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCCCACACCCCCCGGCACCCCCG
512 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * * * * *
14189964 ATCACCGGAACTCCAATGTCGCCAGTCAGGTTCTCCGGC-ATTGCTCTGGCGATGGTGCCTCGAC
577 ATCATCGGAACCCCAATGCCGCCAGTAAGGTTCTCCGACGA-TGCTCCGACGATGGTGCCCCGAC
* * * * **
14190028 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGTAACCCTCGGT-TCAC
641 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GG
* *
14190092 TCCGATCTTACACTGGGAATGAACT
705 TCTGATCTTAGACTGGGAATGAACT
14190117 CCGTATGCCT
Statistics
Matches: 2234, Mismatches: 210, Indels: 114
0.87 0.08 0.04
Matches are distributed among these distances:
856 1 0.00
857 94 0.04
858 9 0.00
859 138 0.06
860 142 0.06
861 314 0.14
862 12 0.01
864 1 0.00
866 2 0.00
867 1 0.00
872 1 0.00
874 1 0.00
875 1 0.00
876 3 0.00
879 1 0.00
883 1 0.00
888 16 0.01
889 33 0.01
891 2 0.00
892 210 0.09
893 186 0.08
894 75 0.03
895 315 0.14
896 674 0.30
897 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (888 bp):
ATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTT
TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGAGTTTTTGGCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGA
ACCCCAATGCCGCCAGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAG
ACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACAAA
CGAGCGTGTGGCGCTCAAACGGCTAGAGGGGCAGGATGCAAAGCAGGGATCGATCGGGTCCCCCT
CTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCTGGTTC
Found at i:14191271 original size:611 final size:613
Alignment explanation
Indices: 14190098--14191271 Score: 1838
Period size: 611 Copynumber: 1.9 Consensus size: 613
14190088 TCACTCCGAT
* *
14190098 CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACGGGCGGGCGGG
1 CTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACCAGCGGACGGGCGGGCGGG
*
14190163 CACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTTTAG
* * *
14190228 GCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGTTCCT
131 GCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * **
14190293 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCAGGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCAGGATTTTCAAAAC
** * *
14190358 TTTTTACAGTTCGTTCGAGATTTTTTAAAATTTTTTTGGAACGATTTTTGGCCCAAAACTTGGTT
261 TTTTTACAG-T-GTTCGAGATTTTTTAAAATTTTTTTGGAAAAAGTTTTGGCCCAAAACTTGGTA
* * *
14190423 GACGTCATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTGAGCTAAAAACTCAAAGTGTACAA
324 GACATCATCCTTGTATTTTTGTTGGCACGCAAAAAAAAATTGAGCTAAAAACTCAAAGTGTACAA
*
14190488 GATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
14190553 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAAGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAAGAGGGATAGGGGGC
* * *
14190618 CAATATAAGGGCCAAGTACCACCACCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTC
519 CAATATAAGGGCCAAGAACCACCACCCAGAGCACAGCATGTGCTGCCGCAACCCTCGGTCTAGTC
14190683 CAATCTTTGAATGGGAATAAACTCCATATG
584 CAATCTTTGAATGGGAATAAACTCCATATG
* * *
14190713 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACCAGCAGG-CGGGCGGGCGG
1 CTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACCAGC-GGACGGGCGGGCGG
* * * * *
14190777 GCACTACGTCGGCCAGATAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
65 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTTTA
* *
14190842 GGGACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
14190907 CTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAA
195 CTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCAGGATTTTCAAAA
*
14190972 CTTTTTAC-G-GTTC-AGGATTTTTTAAAATTTTTTTGGAAAAAGTTTTGGCCTC-GAACTTGGT
260 CTTTTTACAGTGTTCGA-GATTTTTTAAAATTTTTTTGGAAAAAGTTTTGGCC-CAAAACTTGGT
* * * *
14191033 AGACATGATCCTTGTATTTTTGTTGGCACGTAAAAAAAAATTTAGCTAAAAACTCGAAGTGTACA
323 AGACATCATCCTTGTATTTTTGTTGGCACGCAAAAAAAAATTGAGCTAAAAACTCAAAGTGTACA
*
14191098 AGATTTTGTGACCATTTGAAAAAAG-AGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAA
388 AGATTTTGTGACCATTTGAAAAAAGCA-TCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
* * * *
14191162 ACCTGTAAAATCTCAATTGCTTTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAAGAGGGATAGGGG
* ** *
14191227 GCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGC
517 GCCAATATAAGGGCCAAGAACCACCACCCAGAGCACAGCATGTGC
14191272 GTACACCCCC
Statistics
Matches: 509, Mismatches: 46, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
610 2 0.00
611 260 0.51
612 1 0.00
614 1 0.00
615 243 0.48
616 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (613 bp):
CTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACCAGCGGACGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCAGGATTTTCAAAAC
TTTTTACAGTGTTCGAGATTTTTTAAAATTTTTTTGGAAAAAGTTTTGGCCCAAAACTTGGTAGA
CATCATCCTTGTATTTTTGTTGGCACGCAAAAAAAAATTGAGCTAAAAACTCAAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAAGAGGGATAGGGGGCCA
ATATAAGGGCCAAGAACCACCACCCAGAGCACAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCA
ATCTTTGAATGGGAATAAACTCCATATG
Found at i:14191456 original size:26 final size:26
Alignment explanation
Indices: 14191427--14191478 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14191417 CTGGTCCGAT
*
14191427 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14191453 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14191479 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14192353 original size:26 final size:26
Alignment explanation
Indices: 14192317--14192395 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
14192307 CCGATCTGAT
*
14192317 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14192343 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14192369 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14192395 C
1 C
14192396 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14194178 original size:26 final size:26
Alignment explanation
Indices: 14194127--14194179 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14194117 CAAGTCTGAT
* **
14194127 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACAACATATG
*
14194153 CTTAGACTAGGAATGAACAACGTATG
1 CTTAGACTAGGAATGAACAACATATG
14194179 C
1 C
14194180 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACAACATATG
Found at i:14195056 original size:26 final size:26
Alignment explanation
Indices: 14195027--14195079 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14195017 CCGGTCCGAT
*
14195027 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
14195053 CTTAAACTGGGAATGACCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14195079 C
1 C
14195080 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14195974 original size:26 final size:26
Alignment explanation
Indices: 14195923--14195975 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14195913 CCGGTCCGAT
* *
14195923 CTTAGACTGGGAATGAAATTCATATG
1 CTTAGACTAGGAATGAAATCCATATG
* *
14195949 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCATATG
14195975 C
1 C
14195976 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCATATG
Found at i:14195983 original size:896 final size:893
Alignment explanation
Indices: 14190713--14197748 Score: 9087
Period size: 900 Copynumber: 7.8 Consensus size: 893
14190703 ACTCCATATG
* *
14190713 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACCAGCAGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-C-G-A-GCGGGCGGGCGGG
* * *
14190778 CACTACGTCGGCCAGATAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
14190843 GGACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
127 GCACATCTTCATATTTCTTCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * **
14190908 TTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
192 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* ** * * *
14190973 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAAAAGTTTTGGCCTCGAACTTGGTAGACA
257 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
14191038 TGATCCTTGTATTTTTGTTGGCACGTAAAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATT
322 TGATCCTTGTATTTTTGTTGGCATG-CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
14191103 TTGTGACCATTTGAAAAAAGAGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGT
386 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
14191168 AAAATCTCAATTGCTTTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
451 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * **
14191233 ATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCAC
516 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * **
14191298 CGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGGTGAAGAA
581 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
* *
14191363 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATC
646 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
14191428 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGTCTAAGTCAACTCA
711 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
14191493 CGAAACAAGCGTACGAGCGCTCAGTCAGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGGTCGG
776 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * ** * *
14191558 GTCCCCGTTTGCGTGCGGCCGATCATGCTGCCATAACCCTCGATCTGGTCCAAT
841 GTCCCC-TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAAT
* * * * * * * *
14191612 CTTAGAGTGGGAGTAAACTCTGTATGCCTAAGCAAACCGAC-AAA--A-CGAGCGAGCGGGCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * *
14191673 ACGCCGGCCAGAGAGCCGGGATGCGTAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** * *
14191738 ATCTTCATATTTCTGT-GTGATAATTCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTCT-TCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * ** *
14191802 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCAGGATTTTCAAAACTAT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* *
14191867 TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGA-TTTCT-GCCCCAAACTTGGTATACGTG
260 TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTG
* * *
14191930 ATCCCTGTATTTTTGTTGTCATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTT
324 ATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
14191995 GTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACGTGTAA
388 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
14192060 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATAT
453 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
14192125 AAGAGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGGCCCCCCCGATTGTCG
518 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
* * *
14192190 AAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAATAAAA
583 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
*
14192255 ATACGGCACCAGCACAT-CCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCT
648 ATGCGGCACCAGCACATGCCC-GAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CG----G-TC-
* *
14192319 TAAACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATG
701 ----C--GG--T---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG
* * * *
14192384 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCTGACCAGAGGGGTGG
751 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * *
14192449 GATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCATGTTGCCGCAACCTT
816 GATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT
* * **
14192514 TGGTCCAGTCTGAT
880 CGGTCCGGTCCAAT
** * * *
14192528 CTTAGACTACGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACAAGCGGGCGGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC----GGG
* * * *
14192593 CGGGTACTTCGCCAGCCAGAGAGACGGGACGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 C----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
14192658 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGG
123 TTAGGCACATCTTCATATTTCTTCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
14192723 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTG
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
14192788 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTA
253 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
14192853 GACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGATAAAAACTCGAATTGTACAA
318 GACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
14192918 GATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
382 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
14192983 CTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTTTCGAGGTTTGATGAGGGATAAGGTGC
447 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
14193048 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGACCCCCTC
512 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCC
* * * *
14193113 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTCAATGCTCCGACAATGGTGCCCCGAC
575 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * * * * * *
14193178 GAAGCAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATATACGGTCGTAACCCTCGGTCCGGT
640 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
14193243 CCGA---T---CT-----T--A----G-A---TT-G----GGAATGAACTCCGTATGCC-AAGTC
705 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * *
14193281 GACCCACGAAACGAGCGCGCGGGAGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC
770 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * * * * * * **
14193346 GACCGGGTCCCCCTGTGCGTGCTGCCGATCCTACTACTGTAACCCTCGGTCCGATCTGAT
835 GGTCGGGT-CCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAAT
* * * *
14193406 CTTAGGCTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * *
14193471 ATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGTAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
14193536 ATCTTCATATTT-TTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTCTT-CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
14193600 AGCCTTCACCTGCAGTTTCAGGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * *
14193665 TTA-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCGAACATT-GTTGACGTG
260 TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTG
* * * *
14193728 ATCGTTGTATTTTTGTTGGCATGTGAAAAAAAATTCAGCTAAAAACTGGAAGTGTACAACATTTT
324 ATCCTTGTATTTTTGTTGGCATG-CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
14193793 GTGACCATTTGAAAAAAATGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
388 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
14193858 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
453 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* ** * **
14193923 AAGGGCCAAGCACCAGCACCCATCATACATCATGTTCGCACACCCGCCCCGG-CCCCCCGATCAC
518 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCGT
* *
14193987 CGGAACCCCATTGCCGTCAGTCAGGTTCTCCGACGATGTTCCGGTGATGCTCCGACGATGGTGCC
581 CGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CG--G---C---GATGCTCCGACGATGGTGCC
* * * * * *
14194052 CCGATGAAGAAAAATGCGGCACCAGCACAAGCTCGAGCCCAGTATGTGCTGCCGTAACCCTCAGT
635 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
** * * **
14194117 CAAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACAACGTATGCCT
700 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
* * * * **
14194182 AAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGTCGGCCTGAGGGGCGGGATGCGCAAGTTGG
765 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* *** * * * * * *
14194247 AGATCGAAAGGGTCCTGCTCTGTGTGCTACCGATCCTGCTACAGTAACCCTCGGTCCGGTCCAAT
830 GGATCGGTCGGGTCC-CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAAT
* * * *
14194312 CTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACCAAACAAGCGGGCAGGCAGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G--GGCGGG
* *
14194377 CACTACGCCGACCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
14194442 GCACATCTTCATATTTCGAT-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCC
127 GCACATCTTCATATTTC-TTCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14194506 CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
191 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * *
14194571 CTTTTTACGGTTC-GAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAAAC-TGGTAA
256 CTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTAG
* *
14194634 ACGTGATCCTTTTATATTTT-TTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
319 ACGTGATCCTTGTAT-TTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
14194698 GATTTTGTGACCATTTGAAAAAAGCGTCCCTATTTCAAACACTTTATTGGCTACTGGCAGCAAAC
382 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14194763 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
447 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
14194828 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCTCGCCCG
512 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* * * * * * **
14194893 ATCGTCGAAACCCCAATGCCGTCTGTCAGGTTCTTCAGTGATGCACCGGTGATGGTGCCCCGACG
576 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* * * *
14194958 AAGAAAAATGTGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTC
641 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
14195023 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGACCTCCGTATGCCTAAGTCA
706 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
** * * *
14195088 ACCCATAAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCG
771 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * ** *
14195153 GTCGGGTCCCCTTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCAGTTTGGTCTAAT
836 GTCGGGTCCCC-TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAAT
* * * *
14195212 CTTAGACTGGGAATGAACTCCATATGCCTAAGCTAACTGACGAAATGAGCGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * *
14195277 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGTTAGGTGGGTTTATGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
14195342 ATCTT-ATTATTTCTTCGTGCCAAAT-CCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTT
131 ATCTTCA-TATTTCTTCGTGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
** * **
14195405 AATACTTCATGTGAAGTTTCATGGCAAGAC-ACTTATTTTCTATTTTTCATGATTTTTGAAACTT
194 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* *
14195469 TTTGCTGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
259 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* ** *
14195534 ATCCTTGTATTTTTTTTGGTGTGCACAAAAAAATTCAGCTAAGAACTCGAAGTGTACAAGATTTT
324 ATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
14195599 GTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAA
388 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* ** * * * *
14195664 AATCTCAAATGCTTTTTAAATGAGTGTGTGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAC
453 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
14195729 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACTCCGCCCGACCCCCCCGATTGT
518 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CC-CCCGGCCCCCCCGATCGT
* * * *
14195794 CAGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGACTATGGTGCCCCGACGAAGAA
581 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * *
14195859 AAATGCAGCACCAGCACATGCCCGAGCCCTGCATATGCTGCCGCAACCCTCGGTCCGGTCCGATC
646 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* * *
14195924 TTAGACTGGGAATGAAATTCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
711 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** * * * *
14195989 GGAAACAAGCGTGCGGGCGCTCAGCTAGCCAGAGGGGCGAGATCCGCAAGCCGAGGATCTGTCGG
776 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * * * **
14196054 GTCCCCATCCGCGTGCTACCGATCCTGCTACCGCAACCCTTGGTCTGGTCGGAT
841 GTCCCC-TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAAT
* * *
14196108 CTTAGACAGGGAATGAACTCCGCATGCCTAAGCCAACCGATGAAACGAGTGGACGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCGGG
* * ** * * * * *
14196173 CACTATGTCGGCCAGAGAGACGACATGTGCAAGTCATGGATCGATAGCGTAGTAGGTGGGTTTAG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
14196238 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
127 GCACATCTTCATATTTCTTCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
14196303 TTAAACCTTCACGAGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAAA
192 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
**
14196368 TTTTTGTGGTTC-GAGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGA
257 TTTTTACGGTTCAG-GATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
14196431 CATGATCCTTGTA-TTTTGTTGGCATGCATAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
320 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
14196495 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
385 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
14196560 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGATCTCGAGGTTTGATGAGGGATAGGGGGCCAA
450 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
14196625 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATC
515 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* * * * * * *
14196690 ATCGGAACCCTAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGGCGGTGGTGCCCTGGCGAAG
579 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * *
14196755 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCACAACCCTCAGTCCAGTCTGA
644 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* *
14196820 TCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACC
709 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
14196885 TACGAAACGAGCGTGCGGGAGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC
774 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * *
14196950 GGGTCTCCCTCTACGTGCTGCTGATCCTGTTGCCGCAACCCTCAGTCCAGTCCAAT
839 GGGTC-CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAAT
* *
14197006 GTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCGGG
* * * * *
14197071 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATATGGTGGTAGGTTGGTTTAG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
14197136 GTACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
127 GCACATCTTCATATTTCTTCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
14197201 TTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCATGATTTTTGAAAC
192 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * *
14197266 TTTTTACAGTT-TGTGATTTTTTAAAATTCTTTCGGAAGGAGTTTCGGCTCCAAACTTGGTAGAT
257 TTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
14197330 GTGATACTTGTATTTTTGTTGGCATACAAAAAAAAATTCAGCTAAAAACTCAAAGTCTACAAGAT
321 GTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
14197395 TTTATGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTG
385 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
14197460 TAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
450 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * **
14197525 TATAAGGGCCAACTACCGGCACCCATCGCACATGATGTGCGCACACCACCCCTGGAACCCCCGAT
515 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCC-GGCCCCCCCGAT
* * * *
14197590 CGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGATGAA
578 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* * * * ** ** * * **
14197655 GAAAAATACTGTACCAACACATGCTTGAGCCCAGCATGTGCTGCCATAACCCTCAGTCTGGTTTG
643 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
14197720 ATCTTAGACTGGGAATGAACTCCGTATGC
708 ATCTTAGACTGGGAATGAACTCCGTATGC
14197749 CTAAGCCAAC
Statistics
Matches: 5364, Mismatches: 642, Indels: 260
0.86 0.10 0.04
Matches are distributed among these distances:
868 38 0.01
869 276 0.05
870 184 0.03
871 2 0.00
874 3 0.00
876 1 0.00
878 159 0.03
879 99 0.02
882 1 0.00
883 1 0.00
884 2 0.00
885 2 0.00
887 1 0.00
888 1 0.00
889 4 0.00
890 353 0.07
891 226 0.04
892 3 0.00
893 1 0.00
894 11 0.00
895 304 0.06
896 470 0.09
897 13 0.00
898 572 0.11
899 260 0.05
900 651 0.12
901 235 0.04
902 11 0.00
905 19 0.00
906 156 0.03
907 4 0.00
908 2 0.00
909 2 0.00
910 200 0.04
911 297 0.06
912 10 0.00
914 4 0.00
915 2 0.00
916 185 0.03
917 7 0.00
919 1 0.00
920 7 0.00
921 2 0.00
922 1 0.00
924 4 0.00
926 2 0.00
927 1 0.00
928 213 0.04
929 244 0.05
930 2 0.00
931 113 0.02
932 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTTCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAAT
Found at i:14196859 original size:26 final size:26
Alignment explanation
Indices: 14196821--14196870 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14196811 CCAGTCTGAT
*
14196821 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
*
14196847 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAAAGAACTCCGTA
14196871 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:14199368 original size:26 final size:26
Alignment explanation
Indices: 14199332--14199410 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
14199322 CCTATCCGAT
*
14199332 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
14199358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14199384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14199410 C
1 C
14199411 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14202947 original size:26 final size:26
Alignment explanation
Indices: 14202911--14202963 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14202901 CGGATCCAAT
14202911 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14202937 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14202963 C
1 C
14202964 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14204724 original size:26 final size:26
Alignment explanation
Indices: 14204688--14204740 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14204678 CCAGTCTGAT
14204688 CTTAGACTGGGAATGAACTCC-GTATG
1 CTTAGACTGGGAATGAAC-CCTGTATG
14204714 CTTAGACTGGGAATGAACCCTGTATG
1 CTTAGACTGGGAATGAACCCTGTATG
14204740 C
1 C
14204741 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCTGTATG
Found at i:14206229 original size:902 final size:898
Alignment explanation
Indices: 14197718--14207409 Score: 11885
Period size: 903 Copynumber: 10.8 Consensus size: 898
14197708 CAGTCTGGTT
* *
14197718 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC-AAAATGAGCGGGTGGACGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGC--G-GG-CGG
* * * * * *
14197782 GCGGGCAGTCACTACGCCGACCAAAGAGACGGGATGAGCAAGCCGTGGATCGATAGGGTGGTAGA
62 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
14197847 TGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14197912 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGAT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * ** ** * * *
14197977 TTTTGAAACTTTTTATGGTTCAAGATTTTTTTTAATTTTTTCGGAAGGAGTTTTGGCCTCGAGCT
257 TTTTAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
14198042 TGGTAGATGTGATCCTTGTATTTTTATTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAGTG
322 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * * *
14198107 TTCAAGATTTTCT-ATCCATTTGAAAAAAGTGTCGCCATTCCAGACACTTTAATAGCTACTGGCA
387 TACAAGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * ** *
14198171 ACAAACCTGTAAAATCTCAAATGCTCTATAAGGGAGCATGAGATCTCGAGGTTTGATGAGGGATA
451 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATA
14198236 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCC
515 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCC
* * * * * * *
14198301 CCCTCGATCGCCGAAATCCCAAAGCCACCGGTCAGGTTCTCCGACGATGCTCCGATGATGGAGCC
579 CCC-CGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * ** * * * *
14198366 CCAATGAAGAAAAATGCGGCACCAGCACATGCTTGACCCCAACATGTGCTACCGCAAACCTCGG-
643 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * ** *
14198430 TCTGGTTCGATCTGAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGCATGCC
708 TC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * **
14198495 TAAGTCAACCAATGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGATTTGCAAGCCG
772 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * *
14198560 TGGATCGGTCGGGTCCACCTCTGCATGCT---G---CTG-T-----AACCCTC-AGTTCGAT-
837 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGA-TCCGATC
* * * *
14198609 TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGTCGAAATGAGCGTGCGGACGG
1 T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A-CGAGCGGGCGG
* * * * ** * *
14198674 GCGGGTGGGCACTACGCCGACTAGAGAGAAGGGATGCTAAAACTGTGGATCGATAGGGTGGTAGG
62 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
14198739 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAAC
127 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** * * *
14198804 AATGGTCTTTTAAGCCTTCCCGTGAA-TTATCATGGCAAGATGACTCATTTTCTATTTTTCACGA
192 AATGGTCCCTTAAGCCTTCACGTGAAGTT-TCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
14198868 TTTTTAAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCCAAAC
256 TTTTTAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * *
14198933 TTAGTAGACGTTATCCTTGTATTTTTTTTCGCATGCACAAAACAATTCAGTTAAAAACTCGAAGT
321 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
14198998 GTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
386 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
14199063 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGGTCTCGAGGTTTGATGAGGGATA
451 GCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14199128 GGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCAGGCCC
515 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CC
* * *
14199193 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
579 CCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * *
14199258 CGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCCACCCTCGGTC
644 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G--
*
14199323 CTATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTA
706 ------G---TT---C---G---G---TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
14199388 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACCCAGTCGCC
748 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
14199453 CAGAAGGGTGGGATGCACAAGCCGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT
813 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
*
14199518 A-CAGCAACCCTCGATCCGGTC
878 ACCA-CAACCCTCGATCCGATC
* * * * *
14199539 AGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGGCAATCGACG-AAACGA----GCGGGCGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCGG
** * * * *
14199599 GTAGTCA--A--CCGGCCAGAGGGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
** * *
14199660 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGCCTTGTAAATCCATACAATG
131 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14199725 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
14199790 GAAACTTTTTACGGTTCT-AGATTTTTTAAATTTTTTTCGGAAGAAGCTTTGGGCCCAAACTTGG
261 AAAACTTTTTACGGTT-TGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
14199854 TAGACATGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAT
325 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* **
14199919 AAGATTTTGTGATCGCTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
14199984 ACCTGTAAAATCTCTAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
14200049 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * ** * * *
14200114 AGATCGTCGGAACCCCAATGCCGTCGGCCAGGTAATCCGGCGATGCTCTGGCGATGGTGCCTCGA
583 -GATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* ** * * * *
14200179 CGAAGAAAAATGTGGCACCAAG-GTATG-CCGAGCCCAGCATGTGCTGGCACAACTCTTGGTTCG
647 CGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCG
* * * **
14200242 GTCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACAGGGAATAAACTCTATATGCCTAAG
711 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** *
14200307 TCAACCCACGAAACAAGCGTATGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGA
776 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * ** ** * * **
14200372 TCGGTCGGGTCCCCTTCTATGTGCTGCCGATCCTGCTACCACAAAACTGGGTTTGATC
841 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATC
* * * ** *
14200430 CGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATG-AAACGAATGGGCAGGCGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCGG
*
14200494 GTCGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
66 G-C---GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
14200559 TGGGTTTAGGCACATCTTCATATTTCTACGTCCCAATGCCATTTTTATGGCTTGTAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
14200624 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* ** * * *
14200689 TTTTGAAACTTTTTGGGGTTTGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCAAAACT
257 TTTTAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
14200754 TGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTG
322 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
14200819 TACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14200884 CAAACCTGTAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
452 CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
14200949 GGGGCCAATATAAGGGCTAAGTGCCAGCACCCATCGCACATCTTGTGCGCACACCCCCCCGACCC
516 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
* ** * **
14201014 CCCTAATCGTC-AGAACCCCAATGCCGCCTATCAGGTTCCCCGGCGATGCTCCGGTGATGGTGCC
580 CCC-GATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * * *
14201078 CCGACAAAG-AAAATGCGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCACAACCCTCAG-
643 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
14201141 TCGG---G----T---C------TG-A-----T-T--TTAGATTGGGAATGAACTCCGTATGCCT
708 TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
14201181 AAGTCAACCCACTAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATCCGCAAGCCGG
773 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * *
14201246 GGATCGACCGGGT-CCCCTTTCGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAATCCGGT-
838 GGATCGATCGGGTCCCCCTCT-GCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATC
* * * *
14201306 TCGATCATAGACTGGGAATGAACTCCGCATGCCTCAGCCAACCGACG-AAACGAGCGGGCTGGCG
1 T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCG
* * * * * *
14201370 GGCGGGCACTACACCGGCTAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGT
65 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14201435 GTTTAGGCACATCTTCATATTTCTGCATGCCACA-GCAATTTTTATGGCTTGTAAATTCATACAA
130 GTTTAGGCACATCTTCATATTTCTGCGTGCCA-ATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
14201499 TGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * *
14201563 TTCCAACTTTTTACAGTTTGTGATTTTTTAAAATTTTTTCGGTAA-GATTTTTGGCCCCAAACTT
259 TTAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTT
* * * *
14201627 GGTAGACATGATCCTTGTATTTTTGTTGCCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGT
323 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
14201692 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
14201757 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ATGGTTTGATGAGGGATAG
453 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAG
* *
14201821 GGGGCCAATATAAGGGCCAGGTACCATCACCCATCGCACATCATGTGCGCTA-A--------CCC
516 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC-ACACCCCCCGGCCC
* * * * * *
14201877 CCCGATCGTCGGAACCACAATGCCGTCGATCAGGTTCTCTGGAGATGCTCCGACGATGGTGCCCC
580 CCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * * * * * *
14201942 GGCAAAGAAAAATGTGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCC
645 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC
* * *
14202007 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTAA
710 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
14202072 GTCAA-CTACGGAACGAGTGTACGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCATGCCGGGG
775 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
14202136 ATCGGTCGGGTCCCCCTCTGTGTGGTGCCGATCCTGCTACCACAACCCTTGGTCCGATC
840 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATC
*
14202195 TGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAC-AAAACGAGCGGGCGGGCGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCGG
* * * *
14202259 ACAGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
** * *
14202324 TTTAGGCACATCTTCATATTTCTGCACGTCAATGCCA-TTTTATGGCTTGTAAATT-TTACAATG
131 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
14202387 ATCCCTTAAGCCTTCACGTGAAGTTTCAT-GAAAGACGACTCGTTTTCTATTTTTCATGATTTTC
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
14202451 AAAACTTTTTGCGGTTTTG-GATTTTTTAAAATTTTTTTCAGAATGAGTTTTGGCCCCAAACTTG
261 AAAACTTTTTACGG-TTTGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
*
14202515 GTAGACGTGATCCTTGTATTTTTTTTGGCAAT-CACATAAAAAATTCAGCTAAAAACTTGAAGTG
324 GTAGACGTGATCCTTGTATTTTTTTTGGC-ATGCACA-AAAAAATTCAGCTAAAAACTCGAAGTG
* * *
14202579 TACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAAACACTTTAATGGCTACTAGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14202644 CAAACCAGTAAAATCTCAAATGCCCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
452 CAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
** *
14202709 GGACCCAATATAA-GGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACACCCCCGGCCC
516 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCC
* * * * *
14202773 CCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCC
580 CCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * * * *
14202838 GACGAAGAAAAATACGGCACCAGCACATGCTCGAGGCCAGCATGTGCTACCGCAACCCTC-GATC
645 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC
*
14202902 GGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
710 GG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
14202967 AGTCAACCCACAAAACGAGCGTGCGTGCACTCAGCCGGCCAGAGGAGCGAGATGCGCAAGCTGGG
774 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* ** * * ** * * * *
14203032 GATCGGTCAAGTCCCCCTCTGGGTGCTGCCGATCCTGCTATCGTAACTCTCGGTCTGGTC
839 GATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATC
* *
14203092 TGATCTTAGACTAGGAATGAACTCCGTTTGCCTAAGCCAACCGACG-AAACGAGCAGGCGGACGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGC--G-GG-CGG
* * * *
14203156 GGGGGC-GGCACTATGCCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGG
62 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
14203220 TGGGTTTAGGCACGTCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14203285 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * * *
14203350 TTTTAAACCTTTCTCCGGTTCGGGATTTTTTAAAATTTTTTCTGTAA-GAGTTTTGGTCCCAAAC
257 TTTTAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAAC
* *
14203414 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGC
321 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * ***
14203479 GTACAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTTTTACACTTTAATGGCTACTGGCA
386 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * ** * * *
14203544 GCAAATCTCTAAAATCTCAAATATTTTTTAAGGGTGGGTGAGTTCTCAAGGTTTGATGAGGGATA
451 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
14203609 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT-ATGTGCGCACACCCCCCGGCCC
515 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * *
14203673 CCCAGATTG-CTAGAACCCCAATACCGCCGGTCAGGTTCT-C--C-A------G-CGA---TGCT
580 CCC-GATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * *
14203723 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGT
643 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
14203788 TCGGTTCGATCTT--A----GAATGAACTCTGTATGCTTACACTGGG-ATGAACTCCGTATGCCT
708 TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
14203846 AAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG-GTGATGCGTAAGCCGG
773 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * *
14203910 GGATAGA-CTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGGT-CTATTC
838 GGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGA-TC
* * * * * *
14203971 TGATTTTAGACTGGGAATGAACTCCATATGCCTATGCCAACCAAC-AAAACGAGAGGGCAGGCGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCGG
** * *
14204035 GCGGGCACTACGCTTGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATACGGTGGTAGGTGGG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* **
14204100 TTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
14204165 GTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** **
14204229 AAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTCGGGCCCCAAACTTGGT
261 AAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
14204294 AGATGGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
326 AGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
14204359 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGC-ACTGACAGCA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCA
14204423 AACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
14204488 GGCCAATATAAGGCCCAAGTACCAGCAGCCATCGTACATCACGTGCGTACACCCCCCGGCCCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * * *
14204553 GATCG-CCAGAACCCCATTGTCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGG
583 GATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
** * * * * * *
14204617 CGAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACGCACAGTCCAG
647 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGG
*
14204682 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-CCTGTATGCCTAAG
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC-GTATGCCTAAG
* *
14204746 TCAACCCACGAAACGAGCGTGCGGGCGCTTAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
776 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * * *
14204811 TCGATCAGGTCCCACTCTGTGTGCTGTCGGTCTTGTTGCCACAACCCTCGATCTGATC
841 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATC
* * * *
14204869 TGATGTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACTGACG-AAACGAGCGGGCGGGC--
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCGG
* * *
14204931 -C-GACACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTACGTGGG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * **
14204994 TTTTGGCACATCTTCATATTTTTGTGTGCCAATGATATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
14205059 GTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCATTTTCTATTTATCAGGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTT
* * * * **
14205124 TAAAA-TTTTTGCAGTTTGGGATTTTGTAAAATTGTTTT-GGAAGGAGTTTTGGTACCAAACTTG
260 TAAAACTTTTTACGGTTTGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
14205187 GTAGACATGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTTAGCTAAAAACTCGAAGTGTA
324 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
** *
14205252 CAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTT-ACGACACTTTAATAGCTACTGGCAGC
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-GACACTTTAATGGCTACTGGCAGC
* * * * *
14205316 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTATGAGTTTTTGAGGTTTGATGAGGGATAAGC
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
14205381 GGCCAATATAAAGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCTC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-C
* * * *
14205446 CGATCGTCGAAACCCCAATGCCACCGGTCAAGTTCTCCGGCGATCCTCCGGCGATGGTGCCCCGA
582 CGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* * * * * *
14205511 CGAAGAAAAATGTGACACCAGCAGATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTTGGTTCGG
647 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGG
* * * * *
14205576 TCCGATCTTAGACTGGGAATGAACTTCATAGGCTTACACTGGGAATGAACTCCGCATGCCTAAGT
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * ** *
14205641 CAACCCACGAAACGAGCCTGTGGGTGCTTAGCCGGCCAGAGGAGCCAGATGCGTAAGCCGGGGAT
777 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** * *
14205706 CGACCGGGTCCCCCTTTGCGTGCTACAAATCCTGCTGCCGCAACCCTCGATCCGATC
842 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATC
* ** * *
14205763 TGATCTTAGATTGGGAACAAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-AA-CGAGCGGGCGGG
* * * * ** * * ** *
14205828 CGGGCGGGCACTACGACGGCTAGAGAGGCAGGATGTTCATGTCACGGATTGATAGGGTGGTAGGT
63 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
14205893 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACA
128 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
14205958 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
193 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
14206023 TTTGAAACTTTTTACGGTTTGATATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAACCTT
258 TTTAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
14206088 GGTAGACGTGATCCTTGTATTTTTATTAGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGT
323 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
14206153 ACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14206218 AAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
14206283 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * * * * * *
14206348 TCGATCGTCGGAACCCTAATGTCGTCGGTTAAGTTCTCCGGTGATGCTCCGATGATGGTGCCCTG
582 -CGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
** * * * * *
14206413 GGGAAGGAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGTAACCCTCGG-CCT
646 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-
* *
14206477 GGTCCGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
710 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * **
14206542 GTCAACCCACAAAACAAGCGTGTGGGGGCTCAGACGGCCAGAGGGGCAGGATGCGCAAGTTGGGG
775 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
** ** *** *
14206607 ATCGGCCGGGTCCCCCTCTATGTGCTGTTAATCCTGCTACTACAACCCTC-AGTCC-AGTC
840 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGA-TCCGA-TC
** *
14206666 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGAGCGGACGGGCGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCGG
** * * * *
14206730 AAGGGCACTACGTCAGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTTGGTGGG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
14206795 TTTAGGCACACCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
14206860 GTCCCTTAAGCCTTCACGTGATGTTTCATAGCAAGACGACTCATTTTCTATTTTGCACGATTTTC
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * **
14206925 AAAACTTTATACGGTTCGGGATTTTTTAAAATTTTTTTGCAAGGAGTTTTGGTGCCAAAC-TGGT
261 AAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * ** **
14206989 AGATGTGATCCTTGTATTTTTTTTGGTATGAATAAAAAAATTCAGCTAAAGGCTCGAAGCATACA
326 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14207054 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTTGCAGCAAA
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
14207119 CCGGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATA-AGGG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
14207183 CCAATATAAGGGCCAAGTAGCAGCACCCATCACACATCATGGGCGCACACCCCCCCGGCCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCC
** * * *
14207248 GATCACCGAAACCCCTATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGTCCCGAC
583 GATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * ** ** * *
14207313 GAAGAAGAATGCCGCACCAGCACATGCCCGAGCTTAGCATGTGCTGCCATAACCTTTGG-TCTGG
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GG
* *
14207377 TCCGATCTTAGAATGGGAATGAACTCCGCATGC
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
14207410 CTAAGCCAAC
Statistics
Matches: 7599, Mismatches: 995, Indels: 407
0.84 0.11 0.05
Matches are distributed among these distances:
862 57 0.01
863 52 0.01
864 2 0.00
867 1 0.00
871 2 0.00
872 282 0.04
873 178 0.02
874 5 0.00
875 114 0.02
876 361 0.05
877 203 0.03
878 1 0.00
879 107 0.01
880 61 0.01
881 26 0.00
885 31 0.00
886 66 0.01
887 186 0.02
888 394 0.05
889 43 0.01
890 73 0.01
891 301 0.04
892 507 0.07
893 99 0.01
894 564 0.07
895 111 0.01
896 223 0.03
897 256 0.03
898 434 0.06
899 247 0.03
900 115 0.02
901 227 0.03
902 497 0.07
903 1002 0.13
904 1 0.00
905 2 0.00
907 1 0.00
908 1 0.00
909 1 0.00
912 1 0.00
915 2 0.00
916 3 0.00
917 596 0.08
918 86 0.01
919 3 0.00
920 1 0.00
921 12 0.00
923 2 0.00
924 1 0.00
925 2 0.00
926 1 0.00
928 2 0.00
929 52 0.01
930 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCGG
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
AAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
CGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGATC
Found at i:14206521 original size:26 final size:26
Alignment explanation
Indices: 14206485--14206537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14206475 CTGGTCCGAT
* *
14206485 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14206511 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14206537 C
1 C
14206538 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14209450 original size:713 final size:715
Alignment explanation
Indices: 14207482--14209846 Score: 3333
Period size: 714 Copynumber: 3.3 Consensus size: 715
14207472 GCCGTGGATC
* * * * * *
14207482 GATAGGGGGCAAAAATAAGGGCTAAGTACTAGCACCCAGCGCACATCATGTGCGCACAGCACCCC
1 GATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* *
14207547 -AGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA---T--G--G-T-
66 GA-CCCCCCGGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* *
14207602 G-G-CCCGACGAAGAAAAATACGGCACCAGCTCATGCCCGAGCCCAGCATCTGCTACCACAACCC
130 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCC
* * *
14207665 TCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC
195 TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* *
14207730 GGACGGGCGGGCGGGCACTACG-CAGGCCAGAGAGATGGGATGCACAAGCCG-GAGATCTATAGG
260 GGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGATGGGATGCACAAGCCGTG-GATCCATAGG
* * *
14207793 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATCTCTATGGCTTATAA
323 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
14207858 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
388 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
** * * * * * *
14207923 TTCATAATTTTCAAAACTTTTTCCTGTTCCGAATTTTTTAAAATTTTTTTGGAAGGCGTTTTGG-
453 TTCATAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
14207987 CCCAAATTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAATTCAGCT-AAA
518 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAATTTCAGCTAAAA
* * *
14208051 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
581 AATTC-AAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCGTTTCAGACACTTTAATG
* *
14208116 GCTACTGGTAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
645 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
14208181 ATGAGG
710 ATGAGG
*
14208187 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCC
1 GATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * *
14208250 GACCCCCCGGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCTGACGATGCTCCGATGATGG
66 GACCCCCCGGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * **
14208315 TGCCCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCTTAACCCT
131 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCT
** * * *
14208380 CAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCG
196 CAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * ** * *
14208445 GGCGGGCGGGCGTGAACTACGTCGGCCAGAGAGACGGTATGTGCAAACCGTGGATCGATAGGGTG
261 GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCCATAGGGTG
** * * *
14208510 GTAGGTGGGTTTAATCACATCTTCGTACTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATT
326 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
14208575 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-GGACTTTCTATTTTT
391 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG-TTTTCTATTTTT
* * * ** * *
14208639 CATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAAAATGATTTTTGGCCC
455 CATAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * *
14208704 CAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAATTTCAGCTAAAAAATT
520 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAAATT
* * * *
14208769 CAAGTGTACAAGATTTTGTGACCTTTTAAAAAAATTGTCCCCGTTTCAAACACTTTAATGGCTGC
585 CAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTAC
* *
14208834 TGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
650 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
14208899 G
715 G
* * *
14208900 GATAGGAGGCCAAAATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCACTCCCCCCC
1 GATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * **
14208965 GGCCGCCCC-GATCGTCGAAACCCCGATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
66 GACC-CCCCGGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * * *
14209029 GTGGCCCGACAAAGAAAAATACGGCACCAGCTCATGCCTGAGCCCAGTATGTGCTACCACAACCC
130 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCC
* * * *
14209094 TCGGTCTGGTCCGATCTTAGACCGGGAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGA
195 TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
*
14209159 GGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCCATAGGGT
260 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCCATAGGGT
* *
14209224 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG-CATTTTTATGGCTTGTAAAT
325 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
14209288 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTT
390 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTT
*
14209353 CA-CATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
455 CATAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * *
14209417 CAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAGAAAATTT-ACCTAAAAACT
520 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATTTCAGCTAAAAAAT
* *
14209481 TGAAGTGTACAAGATTTTGTGATCATTTAAAAAAAGTGT-CCCGATTTCAGACACTTTAATGGCT
584 TCAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCG-TTTCAGACACTTTAATGGCT
* *
14209545 ACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATG
648 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
14209610 AGG
713 AGG
* * *
14209613 GATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCGTGTGCGCACACCCCCCC
1 GATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
** * * * **
14209677 GACCCCCC-GATCACCGAAAACCCAATGCCGCTGGTCAGATTCTCCGACGATGCTCCGGTGATGG
66 GACCCCCCGGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
** * * * *
14209741 TGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCTCAACCCT
131 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCT
*
14209806 CAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
196 CAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14209847 TTAGACTGGG
Statistics
Matches: 1456, Mismatches: 181, Indels: 40
0.87 0.11 0.02
Matches are distributed among these distances:
703 50 0.03
704 1 0.00
705 53 0.04
706 1 0.00
708 1 0.00
710 1 0.00
711 141 0.10
712 62 0.04
713 415 0.29
714 424 0.29
715 303 0.21
716 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (715 bp):
GATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
GACCCCCCGGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCT
CAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCCATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
ATAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAAATTC
AAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
Found at i:14209849 original size:26 final size:26
Alignment explanation
Indices: 14209820--14209872 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14209810 CTGGTCCGAT
14209820 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
14209846 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14209872 C
1 C
14209873 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14211540 original size:715 final size:713
Alignment explanation
Indices: 14209985--14213583 Score: 4686
Period size: 715 Copynumber: 5.1 Consensus size: 713
14209975 CTACTACCAT
* * *
14209985 AACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
14210050 CGAGAGGGCAGGCGGACGGGCAGGC-CCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTG
66 CGAGCGGGCGGGCGGGCGGGCA--CTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
14210114 ATAGGGTGGTAGG-TGAGTTTAGGCATATCTTCATATTTCT-CATGCCAATGCCATTTTTGTGGC
129 ATAGGGTGGTAGGTTG-GTTTAGGCACATCTTCATATTT-TACGTGCCAATGCCATTTTTATGGC
* * *
14210177 TTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGATTCGTTTT
192 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** * *
14210242 CTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTTAAAATTTTTTTGGAAGGAT
257 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGA-TTTTTTAAAATCTTTTCGGAAGGAT
*
14210307 TTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
320 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
14210372 GAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
385 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
14210437 AATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGT
450 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
14210502 TTTGATAAGGAATAGGGCGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-
515 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* ** * *
14210566 A-ACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGGCGCCGGTCAGGTTCTCCGATGATGC
580 ACACCCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * * ** * *
14210630 TCTGGCGATGGTGTCCTGGCAAAGAAAAATATGACACCAGCACATGCTCAAGCCCAGCATGTGCT
644 TCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
*
14210695 GCCAC
709 GCCGC
* * * * *
14210700 AACCCTCGGTCTGGTCCGATCTTAGATTGGGAACGAACTCCGTAAGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
* *
14210765 CGAGCGGGCGGGCGGGCGGGAACTACG-TCGGCCAGAGAGACGGTATGCGCAAGCCGTGGATCGA
66 CGAGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
** *
14210829 TAGGGTGGTAGGTTGGTTTAATCACATCTTCATACTTTTATGTGCCAATGCCATTTTTATGGCTT
130 TAGGGTGGTAGGTTGGTTTAGGCACATCTTCATA-TTTTACGTGCCAATGCCATTTTTATGGCTT
* *
14210894 GTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
14210959 ATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATCTTTTCGGAAGAATTTT
259 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAAATCTTTTCGGAAGGATTTT
* * * *
14211024 TGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGACATGCACAAAAAAATTCAACTAA
323 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
14211089 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTTTCCCCATTTCAGACACTTTAAT
388 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
14211154 TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTT
453 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* ** *
14211219 GATGAGGGATAGGGGGCCAAAATAAGGGTGAAGTACCAGCACCCATTGCACATCATGTGCGCACA
518 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
14211284 CCCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTTTCCGGCGATGATTTG
583 CCCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTG
* * *
14211349 ACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCA
648 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCG
14211414 C
713 C
* * *
14211415 AACCCTTGGTCCGGTCCGATCTTAGACTTGGAATGAACTTCGTATGCCTAAGACAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
14211480 CGAGTGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGATATGGGATGCACAAGTCGTGGATTGAT
66 CGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
14211545 TGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTT-TACGTGCCAATGCCATTTTTATGGCTTG
14211610 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
195 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
14211675 TTTTTCACGATTTTTGAAACTTTTTA-----C-GA-----T----TC----C---A-GATTTTT-
260 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATCTTTTCGGAAGGATTTTTG
** *
14211716 ---TAAAATTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
325 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
14211778 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
390 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
14211843 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCAT-TTTAAGGGGGTGTGAGTTCCCGAGGATTG
455 CTACTGGCAGCAAACCTGTAAAATCTCAAATGC-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
** * *
14211907 ATGAGGGATAGGGCACCAATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTGCGCACA-
519 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
14211971 CCCTCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCT
584 CCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CT
* **
14212036 -GCGATGGTGGCCC-A-GCAATGAAAAATGCGGCACCAGCACATGC-CTGAGCAAAGCATGTGCT
647 GGCGATGGTGCCCCGACG-AA-GAAAAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCT
* *
14212097 TCTGC
709 GCCGC
* * * * * *
14212102 AACCCTCGGTCCAGTTCAATCGTT-GACTGGGAATGAACTCCGTATGCCTAAGGCAACCGATGAA
1 AACCCTCGGTCCGGTCCGATC-TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG--
* * *
14212166 ATAAGCGAGCGGGTGGGCGGGTGGGCGGGCGGGCACTACG-TCGACCAGAGAGATGGGATGCACA
63 A-AA-CGAGC----GGGC----GGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCA
*
14212230 AGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
117 AGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTT-TACGTGCCAATGCC
* *
14212295 ATTTGTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
181 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *** *
14212360 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTTTCATTTTT
246 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATCTTT
* * **
14212425 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
310 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
14212490 AGAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
375 A-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * **
14212554 TTAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCAATTTAAGGGGGTGTG
439 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
14212619 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCAC
504 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * **
14212684 ATCATGTGCACACA-CCCCCCCGG-CCCCCTATCGTCGGAACCCCAATGCCGTCGGTTTGGTTCT
569 ATCATGTGCGCACACCCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** *
14212747 CCGACAATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
634 CCGACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
* *
14212812 AGCTTGTGCTGTCGC
699 AGCATGTGCTGCCGC
* * * * * *
14212827 AACCTTCAGCCCGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCCCAAGCCAATCGACGAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAA
* * * *
14212891 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGGGCAAGCCATGGA
65 AC--G-A-GCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
14212956 TCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAAT-CCCTTTTTATG
126 TCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATA-TTTTACGTGCCAATGCCATTTTTATG
* * * * * *
14213020 GCATGTAAATTCATACAATAGTCCTTTACGCCTTCACGTGAAGTTTCATAGCAAGACGACTTGTT
190 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
14213085 TTCTATTTTTCATGATTTTCAAAAC-TTTTAGAGGTTCTGGATTTTTTAAAAGT-TTTTCGAAAG
255 TTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTTC-GGATTTTTTAAAA-TCTTTTCGGAAG
* * * * *
14213148 GAGTTTTGGCCCCAAACTTAGTAAACATGATCCTTGTATTTTTATCGGCATGCACCAAAAAAA-T
317 GATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATT
* *
14213212 CAGCTAAAAACACGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACA
381 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
14213277 CGTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
446 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
14213342 GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACTAGCACCTATCGCACATTATGT
511 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * ** *
14213407 GTGCACACCCCCCCCGGCCCCTCGATTGTCGGAACCATAATGCCGTCGGTCAGGTTCTCCGACGA
576 GCGCACACCCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * * * *
14213472 TGCTCCGGTGATGGTGCCCCGATGAAGAAGAATGCGGCACTAGCACATGCTCGAGCCCAGCATGC
641 TGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
*
14213537 ACTGCCGC
706 GCTGCCGC
14213545 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
14213584 CCATATGCTT
Statistics
Matches: 2534, Mismatches: 272, Indels: 152
0.86 0.09 0.05
Matches are distributed among these distances:
685 1 0.00
686 12 0.00
687 381 0.15
688 4 0.00
689 1 0.00
690 2 0.00
691 10 0.00
692 1 0.00
695 5 0.00
698 1 0.00
699 202 0.08
703 1 0.00
704 1 0.00
706 2 0.00
708 2 0.00
711 1 0.00
713 1 0.00
714 327 0.13
715 560 0.22
716 361 0.14
717 107 0.04
718 140 0.06
721 5 0.00
722 3 0.00
723 8 0.00
724 5 0.00
725 142 0.06
726 3 0.00
727 242 0.10
728 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (713 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTACGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATCTTTTCGGAAGGATTTTTGG
CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGC
Found at i:14213285 original size:716 final size:719
Alignment explanation
Indices: 14211729--14213591 Score: 2623
Period size: 716 Copynumber: 2.6 Consensus size: 719
14211719 AATTTGGTAG
14211729 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
1 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAG
14211794 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
65 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * **
14211859 TGTAAAATCTCAAATGCATTTTAAGGGGGTGTGAGTTCCCGAGGATTGATGAGGGATAGGGCACC
130 TGTAAAATCTCAAATGCAATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
14211924 AATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTGCGCACACCCTCCCGGCCCCCCCGA
195 AATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGCACACACCCCCCCGG--CCCCCGA
* * * * * * *
14211989 TCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCTGCGATGGTGGCCCAG-CA
257 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGA
* ** *
14212053 ATGAAAAATGCGGCACCAGCACATGCCTGAGCAAAGCATGTGCT-TCTGCAACCCTCGGTCCAGT
322 A-GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGGT
* * * *
14212117 -TCAATCGTT-GACTGGGAATGAACTCCGTATGCCTAAGGCAACCGATGAAATAAGCGAGCGGGT
385 CT-GATC-TTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACG-AATAAGCGAGC--G-
* * * * *
14212180 GGGCGGGTGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGCACAAGCCGTGGATCGATA
444 AGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCATGGATCGATA
* * *
14212245 GGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTGTATTGCTTGT
509 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTGTATGGCATGT
* *
14212310 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
574 AAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTAT
** * *** * * *
14212375 TTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTTTCATTTTTTTGGAAGGAGTTTTG
639 TTTTCACGATTTTCAAAACTTTTAGCAGTTCGGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTG
* *
14212440 GCCCCAAACTTGGTAG
704 GCCCCAAACTTAGTAA
**
14212456 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAAATCAGCTAAAAACTCGAAGTGTACAAG
1 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATCAGCTAAAAACTCGAAGTGTACAAG
* *
14212521 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACA
65 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14212586 TGTAAAATCTCAAATGCAATTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
130 TGTAAAATCTCAAATGCAATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14212651 AATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCTATC
195 AATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCGATC
** *
14212716 GTCGGAACCCCAATGCCGTCGGTTTGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGGTGAAG
259 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAG
* * * *
14212781 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCTTGTGCTGTCGCAACCTTCAGCCCGGTCTGA
324 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGA
* *
14212846 TCTTAGACTGGGAATGAACTCTGTATGCCCAAGCCAATCGACG-A-AA-CGAGC-AGGCGGGCGG
389 TCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAATAAGCGAGCGAGGCGGGCGG
** *
14212907 GCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGGGCAAGCCATGGATCGGTAGGGTGGTAGG
454 GCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGG
* * *
14212972 TGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAAT-CCCTTTTTATGGCATGTAAATTCATAC
519 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTGTATGGCATGTAAATTCATAC
* * * *
14213036 AATAGTCCTTTACGCCTTCACGTGAAGTTTCATAGCAAGACGACTTGTTTTCTATTTTTCATGAT
584 AATAGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
14213101 TTTCAAAACTTTTAG-AGGTTCTGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAAC
649 TTTCAAAACTTTTAGCA-GTTCGGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAAC
14213165 TTAGTAA
713 TTAGTAA
* * *
14213172 ACATGATCCTTGTATTTTTATCGGCATGCACCAAAAAAATCAGCTAAAAACACGAAGTGTACAAG
1 ACATGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATCAGCTAAAAACTCGAAGTGTACAAG
* *
14213237 ATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACTGGCAGCAAACC
65 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
** *
14213302 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC
130 TGTAAAATCTCAAATGCAATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14213367 AATATAAGGGCCAAGTACTAGCACCTATCGCACATTATGTGTGCACAC-CCCCCCCGGCCCCTCG
195 AATATAAGGGCCAAGTAC-AGCACCCATCGCACATCA--TGTGCACACACCCCCCCGGCCCC-CG
* ** * *
14213431 ATTGTCGGAACCATAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATG
256 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTG
* * * ** *
14213496 AAGAAGAATGCGGCACTAGCACATGCTCGAGCCCAGCATGCACTGCCGCAACCCTCGGTCCGGTC
321 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
* *
14213561 CGATCTTAGACTGGGAATGAACTCCATATGC
386 TGATCTTAGACTGGGAATGAACTCCGTATGC
14213592 TTAGACTGGG
Statistics
Matches: 1016, Mismatches: 109, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
715 2 0.00
716 348 0.34
717 120 0.12
718 150 0.15
721 5 0.00
722 2 0.00
723 1 0.00
724 2 0.00
725 146 0.14
726 5 0.00
727 232 0.23
728 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (719 bp):
ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCAATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAATAAGCGAGCGAGGCGGGCGGGC
GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTGTATGGCATGTAAATTCATACAA
TAGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TCAAAACTTTTAGCAGTTCGGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAACTTA
GTAA
Found at i:14213601 original size:26 final size:26
Alignment explanation
Indices: 14213565--14213617 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14213555 CCGGTCCGAT
14213565 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14213591 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14213617 C
1 C
14213618 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14215476 original size:25 final size:26
Alignment explanation
Indices: 14215424--14215477 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
14215414 TTTTTCACGA
**
14215424 TTTTCAAAATTTTTTCGGTTCGAGAT
1 TTTTCAAAATTTTTTCGGAACGAGAT
* *
14215450 TTTTTAAAATTTTTTCGGAAGGA-AT
1 TTTTCAAAATTTTTTCGGAACGAGAT
14215475 TTT
1 TTT
14215478 GGCCCCAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (26 bp):
TTTTCAAAATTTTTTCGGAACGAGAT
Found at i:14215693 original size:719 final size:714
Alignment explanation
Indices: 14213721--14215913 Score: 3188
Period size: 700 Copynumber: 3.1 Consensus size: 714
14213711 CTGCCGATCT
* * *
14213721 TGCTGCTGCAACCCTCAGTCTC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCA
1 TGCTGCCGCAACCCTCGGTC-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14213785 ACCGATGAAACGAGCAGACGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGGGC
65 ACCGACGAAATGAGC-GACGGGC-GGCGGGCGGGCACTACGCCAGG-CAGAGAGACGGGATGCGC
* *
14213849 AAGCCGTGGATTGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
127 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
14213914 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAG
192 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
14213979 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTACGGGATTTTTTAAAATATT
257 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAA-TTTTTATGGTTCGAGATTTTTTAAAATTTT
* * *
14214044 TTCGAAAGCAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
321 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAA
14214109 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14214174 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
14214239 ACTTCTTGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAA
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
14214304 ATCA-TGTGCGCA--------CACCCCCTATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCC
581 ATCAGTGTGCACACCCCCCGGCACCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
14214360 GGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
646 GGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATACCCGAGCCCAG
14214425 CATG
711 CATG
14214429 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14214494 CCGACGAAAT----GA-GTG-GGCTGGCGGGCACTATGCCAGCCAGAGAGACGGGATGTGCAAGC
66 CCGACGAAATGAGCGACGGGCGGCGGGCGGGCACTACGCCAGGCAGAGAGACGGGATGCGCAAGC
*
14214553 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * * * *
14214618 TTTATGGCTTGTAAATTCATAGAATGGTCCCTGAAGCCTTCATGTGAAGTGTCATGGCAGGATGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14214683 CTCG-TTTCTATTTTTCAAGATTTTCCAAACTTTTTGTGGTTCGATATTTTTTAAAATTTTTGCG
261 CTCGTTTTCTATTTTTCACGATTTT-CAAAATTTTTATGGTTCGAGATTTTTTAAAATTTTTTC-
*** *
14214747 GGAAGGAGTTTTGATGCCAAA-TGTGGTAGATGTGATCCTTGTATTTTTCCTGGCATGCACAAAA
324 GGAAGGAGTTTTGGCCCCAAACT-TGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
* * *
14214811 ATATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14214876 AGACACTTTAATGGCTACTGGTAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
14214941 TTCTGGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAGGTACCAGCACCCATCCCACAG
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA-
* * * *
14215006 T-AGGTGTGCACACCCCCCTCGGCACCCCCGATCGTCGAAACCTCAATGCCGCCGGTTAGGTTCT
582 TCA-GTGTGCACA-CCCCC-CGGCACCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
** * * *
14215070 CCGGCGATGCTCCGGTGATGGTGCCCCGTTGAAGAAAAATGTGACACCAGCACATACCTGAGCCA
644 CCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATACCCGAGCCC
*
14215135 AGCTTG
709 AGCATG
* * ** * *
14215141 TGCTACCACAACCCTCGGTTTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
14215206 CCGACGAAATGAGCGGACGGGCGAGCGGGCGGGCACTACGCCAGGCAGAGAGACGGGATGCGCAA
66 CCGACGAAATGAGC-GACGGGCG-GCGGGCGGGCACTACGCCAGGCAGAGAGACGGGATGCGCAA
*
14215271 GCCGTGGCTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14215336 TTTTTATGGCATGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
14215401 GACTCGTTTTCTATTTTTCACGATTTTCAAAATTTTT-TCGGTTCGAGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTCAAAATTTTTAT-GGTTCGAGATTTTTTAAAATTTTTT
* * *
14215465 CGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
323 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
* *
14215530 AAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14215595 AGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14215660 TTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
14215725 CATGTGCGCACACCCCCCGGC-CCGCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
583 CA-GTGTGCACACCCCCCGGCACC-CCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * * ** *
14215789 GACGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCGGTGCCAGCACATTCCCGAGCCCAG
646 GGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATACCCGAGCCCAG
14215854 CATG
711 CATG
* * *
14215858 TGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGC
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14215914 TTAGACAGGG
Statistics
Matches: 1312, Mismatches: 142, Indels: 53
0.87 0.09 0.04
Matches are distributed among these distances:
699 47 0.04
700 401 0.31
701 2 0.00
702 9 0.01
703 2 0.00
707 1 0.00
708 68 0.05
712 169 0.13
716 2 0.00
717 143 0.11
718 8 0.01
719 244 0.19
720 197 0.15
721 19 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (714 bp):
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAATGAGCGACGGGCGGCGGGCGGGCACTACGCCAGGCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTCAAAATTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAG
TGTGCACACCCCCCGGCACCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATACCCGAGCCCAGCATG
Found at i:14215916 original size:26 final size:26
Alignment explanation
Indices: 14215887--14215939 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14215877 CCAGTCCAAT
*
14215887 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
14215913 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
14215939 C
1 C
14215940 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:14216819 original size:26 final size:26
Alignment explanation
Indices: 14216781--14216833 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14216771 CTGGTCTGAT
* *
14216781 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
*
14216807 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCATATG
14216833 C
1 C
14216834 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:14217532 original size:902 final size:901
Alignment explanation
Indices: 14215162--14218601 Score: 4987
Period size: 894 Copynumber: 3.8 Consensus size: 901
14215152 CCCTCGGTTT
* * * *
14215162 GGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGACGGG
1 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G-CGGG
* *
14215227 C-GAGCGGGCGGGCACTACGCCAGGCAGAGAGACGGGATGCGCAAGCCGTGGCTCGATAGGGTGG
64 CGGA-CGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
14215291 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCATGTAAATTC
128 TAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
14215356 ATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
193 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCA
* * *
14215421 CGATTTTCAAAA-TTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCA
258 CGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCA
* * *
14215485 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGA
323 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
* *
14215550 AGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTG
388 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
14215615 GCAGCAAACTTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGG
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
14215680 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCCCCGG
518 ATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * *
14215745 CCCGCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTA
583 CCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* ** * *
14215810 CCCCGACGAAGAAAAATGCGGTGCCAGCACATTCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
648 CCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCG
** *
14215875 GTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-AGGGAATGAACTCCATATG
713 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA-GGAATGAACTCCGTATG
* * *
14215939 CCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTTAGAGGGGTGGGATGCGCAATC
777 CCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGC
* * * *
14216004 CGGGGATCAG-CAGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCC
842 CGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCTTAGATCC
* *
14216064 GGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA--GC--G-G
1 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGGGCG
* *
14216124 G-CGGGCGGGCGCTACGCCAGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
66 GACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
14216188 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGCCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
14216253 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
14216318 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAACTTTTTTTGGAAGGATTTTTGGCCCCAAAC
261 TTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAC
* * * *
14216383 TTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGGTAAAAACTCAAAGT
326 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* * *
14216448 GTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTTAGACACTTTAATGGCTACTAGCA
391 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14216513 GCAAACCTGTAAAA-CTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
456 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14216577 GGGGGCCAAAATAAGAGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
521 GGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* ** ** *
14216642 CCCCGATCGCCAGTACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCA
586 CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* *
14216707 CGACGAACAAAATTACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
651 CGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
** *
14216772 TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTAGGAATGAACTCCGTATGCCTA
716 TGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTA
* * * ** * *
14216837 AGTCAACCCATGAAATTAACGTGCGAGCACTAAGCAGGCTAGAGGGGCGGGATGCGCAAGCCGGG
781 AGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
14216902 TATTGGTCGGGTCTCCCTCTACGTGCTGTCGATCCTACTGTCGCAACCTTAGATCC
846 GATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCTTAGATCC
* *** *
14216958 GATCCGATCTTAGACTAGGAATGAACTTTATATGCCTAAGCCAACTGACGAAACGAGCAGGCGGG
1 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--GCGGG
*
14217023 CGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGT
64 CGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
14217088 AGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
14217153 TACAATGGTCCCTTAAGACTTCACGTGAATTTTCATGACAAGACGACTGGTTTTCTATTTTTCAC
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCAC
* *
14217218 GATTTTTAAAACTTTTTACGGTTCGAGA-TTTTTAGAATTTTTTCGAAAGGATTTTTGGCCCCAA
259 GATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAA
** * *
14217282 ACTTTTTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
*
14217347 GTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
14217412 CAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTATGAGTTCTCGTGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
14217477 TAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCG
519 TAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCG
* * * * * * *
14217542 GCCCCCCCGATCACCAGAACCCTAATGTCGTCGGTTAGGTTCTCCGGCGATGTTCCGACGATGGT
582 GCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * * * *
14217607 GCCCCGACGAAGAAAAATAAGGCACCAGCGCATGCTCGAGCCCAGCATCTACTGCCGTAACCCTT
647 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
14217672 GGTCTGGTTCAATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGCACTCCGTCTA
712 GGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATG
* * * *
14217737 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCTGCCGGCTAGAGTGGCGGGATGCGCAAGC
777 CCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGC
** * * * * *
14217802 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCTTGCTACCACAACCCTTAGCT-C
842 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAA-CCTTAGATCC
* * * *
14217862 GGTCTGATCTTAGACTGGGAATGAGCTCCGTATACCTAAGCCAACCGACGAAACGA-C-CGGGCG
1 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGGGCG
* * * * * * * *
14217925 GGCGGGTGGGCACTATGTCGGCCAAAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAG
66 GACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * *
14217990 GTGGGTTTAGGCACATCTTCATATTTTTGTGTGGCAAAGCCATTTTTATGGCTTGAAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * * * *
14218055 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACAACTCATTTTTTATTTTTTAGGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
14218120 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
261 TTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAC
* * *
14218185 TTGGTAGACGTGATCCTTGTATTTTTTGTTGGCATGGAAAAAAAAATTCAGCTAAAAACTCGAAG
326 TTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
*
14218250 TGTACAAGATTTTGTGACTA-TT--AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
390 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
14218312 AGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
455 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
14218377 AGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CACGCCCCCCTGG-
520 AGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGC
* * * * * *
14218440 CCCCCTGATCGTCGGAACCCCGATGACGCCGGTCAGGTTCTCCGACGATGCTCCGACGATAGTGC
584 CCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * *
14218505 CCCGACGAAGAAAAATGCGGCACCAGCACATGC-CTGAGCCTAGCATGTGCTTCCGTAACCCTCG
649 CCCGACGAAGAAAAATACGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGCCGCAACCCTCG
*
14218569 GTCTGGTCCGATCTTAGACTGGGAATGAACTCC
713 GTCTGGTCCAATCTTAGACTGGGAATGAACTCC
14218602 GTATTCCTAA
Statistics
Matches: 2265, Mismatches: 253, Indels: 46
0.88 0.10 0.02
Matches are distributed among these distances:
894 620 0.27
895 184 0.08
896 141 0.06
897 6 0.00
898 6 0.00
899 149 0.07
900 200 0.09
901 223 0.10
902 412 0.18
903 5 0.00
904 312 0.14
905 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGGGCG
GACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
CGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
TGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTA
AGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGG
GATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCTTAGATCC
Found at i:14219320 original size:26 final size:26
Alignment explanation
Indices: 14219291--14219343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14219281 CCGATGCGAT
*
14219291 CTTAGACTAGGAATGAACTGCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14219317 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14219343 C
1 C
14219344 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14220220 original size:26 final size:26
Alignment explanation
Indices: 14220184--14220236 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14220174 CCGATCCGAT
14220184 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14220210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14220236 C
1 C
14220237 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14220304 original size:893 final size:895
Alignment explanation
Indices: 14218560--14220304 Score: 2700
Period size: 893 Copynumber: 2.0 Consensus size: 895
14218550 TGTGCTTCCG
* * * * *
14218560 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCGAACCGACGAA
1 TAACCCTCGGTCTGGTCCGATCTTAGACTAGGAAGGAACTCCGTATGCCTAAGCCAACAGACGAA
* * * *
14218625 ACGAGCGGGTGGACGGGCACTACACCGGCCAGAGAGATAGGATGTGCAAGCCGTGGATCGATAGG
66 ACGAGCGGGCGGACGGGCACTACACCGGCCAGAGAGACAGGACGCGCAAGCCGTGGATCGATAGG
*
14218690 ATGGTAGTGGGTTTAAGCACATCTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAA
131 ATGGTAGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
14218755 TTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATTTT
196 TTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTAATGGCAAGACGACTCGTTTTATATTTT
**
14218820 TCACGATTTTGGATCCTTTTGGCGGTTCGGTATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
261 TCACGATTTTGGAAACTTTTGGCGGTTCGGTATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
14218885 CCAAACATGGTAGACATGATCCTTGTATTTTTTTTGTCACGCACAAAAAAATTCAGGTAAAAAAT
326 CCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAAAT
*
14218950 CGAAGTGTACAAGATTTTGTCACCATTTGAAAAAGGTGTCCCCATTTTCAGACACTTTAATGGCT
391 CGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCT
*
14219015 ACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
456 ACTGGCAGAAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
14219080 AGGGATAGGGTACCAATATAAGGGCCAAGTACCAGCACCTATCAGACATCATGTGCGCACATCCC
521 AGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACATCCC
* *
14219145 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCAGCGATGCTTCGGCGAT
586 CCGGCCCCCCCGATCGTCGGAACCCCAAGGCCGCCGGTCAGGTTCTTCAGCGATGCTTCGACGAT
* * * *
14219210 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACGTGCCCGAGCCCAGCATGTGCTATCGCAACC
651 AGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
* * * *
14219275 CTCGGTCCGATGCGATCTTAGACTAGGAATGAACTGCGTATGCTTAGACTAGGAATGAACTCCGT
716 CTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGT
** ** *
14219340 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGGACAGAGGGGCAGGATGGGCA
781 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGACAGAGGGGCAAAATGGACA
14219405 AGCCGGGGGTCGGCCAGGTCCCCCTCTATGTGCTGCCGATCCTATTGTCA
846 AGCCGGGGGTCGGCCAGGTCCCCCTCTATGTGCTGCCGATCCTATTGTCA
*
14219455 TAACCCTCGGTCTGGTCCGATCTTAGACTAGGAAGGAACTCTGTATGCCTAAGCCAACAGACGAA
1 TAACCCTCGGTCTGGTCCGATCTTAGACTAGGAAGGAACTCCGTATGCCTAAGCCAACAGACGAA
* * *
14219520 ACGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATAAG
66 ACGAGCGGGCGGACGGGCACTACACCGGCCAGAGAGACAGGACGCGCAAGCCGTGGATCGAT-AG
14219585 G-TGGTAGGTGGGTTT-AGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
130 GATGGTA-GTGGGTTTAAG-CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
** *
14219648 AAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCTTGGCAAGATGACTCGTTTTATAT
193 AAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTAATGGCAAGACGACTCGTTTTATAT
* * * *
14219713 TTTTCACGATTTTTGAAACTTTTTGCGGTTCGAG-A-TTTTTAAAATTTTTTTGGAAGGCGTTTT
258 TTTTCACGATTTTGGAAACTTTTGGCGGTTCG-GTATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
14219776 GGCCCCAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
322 GGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAA
* *
14219841 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAAT
387 AAATCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAAT
* *
14219905 GGCTATTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GTTT
452 GGCTACTGGCAGAAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
14219969 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
517 GATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
* * * *
14220034 -CCCCCTGGCCCCCCCGATCGTCGGAACCCCAAGGCCGTCGGTCAGGTTCTCTGATC-AT-TTTC
582 TCCCCC-GGCCCCCCCGATCGTCGGAACCCCAAGGCCGCCGGTCAGGTTCT-TCAGCGATGCTTC
* * * *
14220096 TGACGATAGTGCCTCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGC
645 -GACGATAGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * *
14220161 CGCAACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
709 CGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGAATGA
* *
14220226 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAGCC-GACCAGAGGGGCAA
774 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGA-CAGAGGGGCAA
**
14220290 AATGGATTAGCCGGG
838 AATGGACAAGCCGGG
14220305 TGTCACAGAC
Statistics
Matches: 770, Mismatches: 72, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
892 10 0.01
893 289 0.38
894 76 0.10
895 251 0.33
896 143 0.19
897 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
TAACCCTCGGTCTGGTCCGATCTTAGACTAGGAAGGAACTCCGTATGCCTAAGCCAACAGACGAA
ACGAGCGGGCGGACGGGCACTACACCGGCCAGAGAGACAGGACGCGCAAGCCGTGGATCGATAGG
ATGGTAGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTAATGGCAAGACGACTCGTTTTATATTTT
TCACGATTTTGGAAACTTTTGGCGGTTCGGTATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAAAT
CGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCT
ACTGGCAGAAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACATCCC
CCGGCCCCCCCGATCGTCGGAACCCCAAGGCCGCCGGTCAGGTTCTTCAGCGATGCTTCGACGAT
AGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
CTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGACAGAGGGGCAAAATGGACA
AGCCGGGGGTCGGCCAGGTCCCCCTCTATGTGCTGCCGATCCTATTGTCA
Found at i:14228574 original size:26 final size:26
Alignment explanation
Indices: 14228523--14228575 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14228513 CCGGTCTGAT
* * *
14228523 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
14228549 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
14228575 C
1 C
14228576 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:14229353 original size:894 final size:890
Alignment explanation
Indices: 14226002--14229440 Score: 4493
Period size: 894 Copynumber: 3.9 Consensus size: 890
14225992 TCGGCTGGGC
** * * ** *
14226002 TCCCCTCTACGTGCTGCCGATCCTGCTATCACAACCCTTAG-TCTGGTCTGATCTTAGATTGGGA
1 TCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTTC-GGTCTGATCTTAGACTGGGA
* * * * * *
14226066 ATGAACTCAGTATGCCTAAGCCAACCGATGAAACAAGCGGGCAGGCGGGCACTATGTCGGCCAGA
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGA
* * * * *
14226131 GAGACGGGATGCGCAAGCCTTAGATCAATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTT
130 GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * * *
14226196 TTACATGCCAATGCCATTTTTTTGCCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGA
195 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * ** * *
14226261 AGTTTCATGGCAAGACGACTCATTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCGAGA
260 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTCTTTACGGTTCAAGA
* * *
14226326 TTTTTTAAAATTTTTTC-AGAAGGATTTTTGGCCCTAAACTTGATAGACATGATCCTTGTATTTT
325 TTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTT
* * * **
14226390 TGTTGCCATGCCCAAAAAAAATCAGCTAAAAAAGCTCAAAGTGTACAAGATTTTGTGATAATTTG
389 TGTTGGCATGCACAAAAAAAATCAGCT-AAAAA-CTCCAAGTGTACAAGATTTTGTGACCATTTG
* * * * *
14226455 AAAAAAGTGTCCCCATTTCAGACACATTAATAGCTACTGGTAGCAAACCTGTAAAATCTAAAATG
452 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
14226520 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAATT
517 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCTATATAAGGGCCAAGT
* * * *
14226585 ACAAGCACCCATCGCAGATCATGTGCGCACACCCCCCGGCCCCCCGATC-ACCGAAACCCCAATG
582 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCAG-AACCCCAATG
* * * ** ** *
14226649 CCGCCAGTCAGGTTCTCCG-----G-T-----GATGGTGCCCTAGTAAAGAAAAATACGGCACCA
646 CCGTCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTACCCCGGCGAAGAAAAATGCGGCACCA
* **
14226703 GCACATGCCCGAGCCCAGCATGTGTTATCGCAA-CCT--T-T-G---G-TC-----C-----A-G
711 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGGTCCGATCTTAGACTGGGAATG
* *
14226748 ---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGC
776 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
* * *
14226808 GGG-AGCTCAGCCAGCCAGAGAGGCGGGATACGCAAGCCGGGGATCGACCTG-G
841 GGGCA-CTCAGTC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-C-GAG
* * * * * * **
14226860 ACCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGA
1 -TCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGA
* * *
14226925 ATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGA
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGA
* * *
14226990 GAGACGGGATGCGCAAGTCATGCATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTT
130 GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
14227055 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
195 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
** * * * *
14227120 AGTTTCATGGCAAGGTGACTCGTTTTCTATTTTTCATGATTTTCGAAGCTCTTTACGATTCGAGA
260 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTCTTTACGGTTCAAGA
*
14227185 TTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
325 TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* * * * *
14227249 GTTAGCATGCACAAAAAAAATTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTCGAAA
390 GTTGGCATGCACAAAAAAAATCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAA
** * * *
14227314 AAAGTGTCCTTATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATTTGAAATGCTC
455 AAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
14227379 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGG--TAATATAAGGGCCATGTAC
520 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCT-ATATAAGGGCCAAGTAC
* * * * * *
14227441 CAGGACCCACCGTACATCATGTACGCACACCCCCCGACTCCCCCAATCG-CTAGAACCCCAATGC
584 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGTC-AGAACCCCAATGC
* * * * *
14227505 CATCGGTTAGGTTCT-CTAGCGATGCTCCGACGATGGTACCCTGGCGAAGAAAAATGCGGCACCA
647 CGTCGGTCAGGTTCTCCGA-CAATGCTCCGACGATGGTACCCCGGCGAAGAAAAATGCGGCACCA
* * * * * *
14227569 GCACATGCCCAAGCCCAGCATGTCCTGTCGCAACCCTTGGTCTGATCCGATCATAGACTGGGAAT
711 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGTCTGGTCCGATCTTAGACTGGGAAT
* * * * *
14227634 GAACTCCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACAAAATGAGCGTA
775 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
** * *
14227699 CGGGCGTTCAGTAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGG
840 CGGGCACTCAGT-CGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACGA-G
* *
14227752 TCCCACTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGG-TCTGCTCTGATCTTAGACTGGG
1 TCCC-CTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTTC-GGTCTGATCTTAGACTGGG
*
14227816 AATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACG
64 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGGCGGGCGGGCACTACG
* * *
14227881 CCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
121 CCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
14227946 TTCATATTTCTGCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
186 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
14228011 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATATTGT
251 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TCTT-T
* * *
14228076 --GGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTCGAG-CCCAAACTTGGTAAACATGAT
314 ACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG-GCCCCAAACTTGGTAGACATGAT
* * *
14228138 CCTTATATTTTTATTGGCATGCACAAAAAAAATCAGCCAAAAAC-CCGAAGTGTACAAGATTTTG
378 CCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCC-AAGTGTACAAGATTTTG
*
14228202 TGACCATTTGAAAAAAGTGTTCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
442 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
14228267 ATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
507 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCTATATA
** *
14228332 AGGGCCAAGTACCAGCACCCATAACACATCATGTGCGCACACCCCCCCGGCCCCCCGATTGAT-A
572 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCG-TCA
* ** *** * *
14228396 GAACCCCAACGCCGTCGGTCAGGTTCTCCGGTAATGCTCCGGTAATGGTGCCCCGACGAAGAAAA
635 GAACCCCAATGCCGTCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTACCCCGGCGAAGAAAA
* * * * *
14228461 ATGCAGTACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTT
700 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TCTGGTCCGATCTT
* * *
14228526 AGACTGGGAATGAACTTCGTATGCTTAGACTGAGAATGAACTCCATATGCCTAAGTCAACCCACG
764 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
*
14228591 AAATGAGCGTGCGGGCACTCAGTCGTCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGAG
829 AAATGAGCGTGCGGGCACTCAGTCG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACGAG
* *
14228655 TCCCCTTCTATGTGCTGTCGATCCTGCTACCACAACCCTCGGTTCGGTCTGATCTTAGACTAGGA
1 TCCCC-TCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGA
* * * *
14228720 ATGAACTCCATATGCCTATGCCAACCGATGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGA
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGA
14228785 GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
130 GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
14228850 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGA
195 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
*
14228915 AGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTTGAAACTCTTTACGGTTCAAGA
260 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTCTTTACGGTTCAAGA
*
14228980 TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTT
325 TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* *
14229044 GTTGGCATGCACAAAAAAACTCAGCTAAAAACTCCAAGTGTACGAGATTTTGTGACCATTTGAAA
390 GTTGGCATGCACAAAAAAAATCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
14229109 AAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
455 AAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
14229174 TTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAGGGGGCCTATATAAGGGCCAAATACC
520 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCTATATAAGGGCCAAGTACC
*
14229239 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCG
585 AGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCAGAACCCCAATGCCG
* *
14229304 TCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTACCCCGGTGAAGAAAAATGCGGCACCAACA
649 TCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTACCCCGGCGAAGAAAAATGCGGCACCAGCA
* * *
14229369 CATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCTGTTTGGTCCGATCTTAGACTGGAAATGAA
714 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCTGGTCCGATCTTAGACTGGGAATGAA
14229434 CTCCGTA
778 CTCCGTA
14229441 AGCCTAAGCC
Statistics
Matches: 2246, Mismatches: 252, Indels: 129
0.85 0.10 0.05
Matches are distributed among these distances:
854 47 0.02
855 35 0.02
856 125 0.06
857 5 0.00
858 75 0.03
859 292 0.13
860 2 0.00
861 1 0.00
866 57 0.03
867 2 0.00
868 1 0.00
870 1 0.00
871 1 0.00
875 1 0.00
876 2 0.00
881 1 0.00
886 1 0.00
887 1 0.00
890 3 0.00
891 6 0.00
892 171 0.08
893 8 0.00
894 356 0.16
895 266 0.12
900 208 0.09
901 207 0.09
902 10 0.00
903 347 0.15
904 14 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAG
AGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTCTTTACGGTTCAAGAT
TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAAATCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCTATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGTC
GGTCAGGTTCTCCGACAATGCTCCGACGATGGTACCCCGGCGAAGAAAAATGCGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGGTCCGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCA
CTCAGTCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACGAG
Found at i:14230130 original size:710 final size:712
Alignment explanation
Indices: 14228688--14231587 Score: 4173
Period size: 717 Copynumber: 4.1 Consensus size: 712
14228678 CTGCTACCAC
* * * * *
14228688 AACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTATGCCAACCGATGAAA
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
14228753 CGAGCGGAC-GG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAG
66 CGAGCGGGCGGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
14228816 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
131 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
14228881 AATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
14228946 TTTCATGATTTTTGAAACTCTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
261 TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
* *
14229011 CCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAA
326 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAA
* * * *
14229075 CTCCAAGTGTACGAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGC
391 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGC
*
14229140 TACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTGA
456 TACT-GCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
*
14229204 TGAGGGATAGGGGGCCTATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACC
520 TGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
14229269 CCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCGACAATGCTCC-GA
585 CCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCAG-
* ** *
14229332 CGATGGTACCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGT
648 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
* ** * * * *
14229397 AACCCTCTGTTTGGTCCGATCTTAGACTGGAAATGAACTCCGTAAGCCTAAGCCAATCGACGAAA
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
*
14229462 CGAGCGGGC-GGC-CGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
66 CGAGCGGGCGGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
14229525 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCTAATGCCATTTTTATGGCTTGTA
131 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
14229590 AATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGACGACTCGTTTTTTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGACGACTCGTTTTCTATT
*
14229655 TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
261 TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
* * *
14229720 -CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCCATGCACTAAAAAATTCAGCTAAAA
326 CCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAA
* * * *
14229784 AGTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACTCTTTAACGG
390 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGG
*
14229849 CTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
455 CTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
** * * *
14229914 TGAGGGATAGGGGGCCAATATAAATGCCAAGTACCAGGACCCATCACACATCATGTGCGCACA-C
520 TGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
14229978 CCCCTAGCCCCTCGGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCAGACGATGCTCCAGC
585 CCCCTGGCCCC-CCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCAGC
*
14230043 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
649 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
* * *
14230107 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTAC-TATGCCTAAGCCAACCAACGAAC
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
14230171 CGAGCAGGCGTACGGGCAGGCGGGCGCTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGAT
66 CGAGC-GG-G--CGGGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
** * *
14230236 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATTTTAATGG
125 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* **
14230301 CTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACTCGTTT
190 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGACGACTCGTTT
* * * * * * *
14230366 TCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTTAAATTTTTTCGGAAGTAG
255 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAG
*
14230431 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGC
320 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGC
*
14230496 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTT
385 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * ** * *
14230561 AATGTCTATTGGAAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
450 AACGGCTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
*
14230626 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATATGCGC
515 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGC
* * * *
14230691 ACACCCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCTGCTGGTAAGGTTCTCCGGCGATGCT-
580 ACACCCCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTC
* * * *
14230755 CAGGTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
645 CA-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
14230820 CCGT
709 CCGT
* * ** * * * *
14230824 AACCCTCGGTCTGATCCAATTTTAGATTGGGAATGGACTCCGTATGCCTAAGCCAACCGAAGAAA
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
14230889 CGAGCGGGCGGGGGGCGGGCGGGCATTACGTCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
66 CGAGCGGGC---GGGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
14230954 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTAGTGG
126 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA-TGG
*
14231018 CTTGTAAATTCATACAATGGTCACC-TAAGCCTTCACATAAAGTTTCGTGGCAAGACGACTCGTT
190 CTTGTAAATTCATACAATGGTC-CCTTAAGCCTTCACATAAAGTTTCATGGCAAGACGACTCGTT
* ** * * *
14231082 TTCTATTTTTCATAATTTTCAAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTCAAAAAG
254 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGAAAGG
* * * * *
14231146 AGTTTTGGCCCCAAACGTGGTAGACATCATCCTTGTATTTTTTTTGGCATTCCCAAAAAAAATCA
318 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCA
* *
14231211 GCCAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
383 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
14231276 TT-ACTGGCTACCAG-TAGTAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTT
448 TTAAC-GGCTA-CTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
14231339 AAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
511 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGT
* * * ** * * * *
14231404 GCGCACACCCCCC-GGCCCCCCCGATCACTGAAATTCTAATACCGCCGGTCAGGTTCTCCGGCGA
576 GCGCACACCCCCCTGG-CCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGA
* * * * *
14231468 TGCTCCGGCGATGGTGCCCC-AGTGAAGAAAAATACAGCACCAGCACATGCCCGAGCCTAGCATG
640 TGCTCCAGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
*
14231532 TGCTGCCGC
704 TGCTGCCGT
*
14231541 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14231588 TTAGACTGGG
Statistics
Matches: 1961, Mismatches: 200, Indels: 52
0.89 0.09 0.02
Matches are distributed among these distances:
708 28 0.01
709 335 0.17
710 345 0.18
711 3 0.00
713 1 0.00
714 4 0.00
716 11 0.01
717 1167 0.60
718 67 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGC
TACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCAGCGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
Found at i:14231612 original size:26 final size:26
Alignment explanation
Indices: 14231561--14231613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14231551 CCAGTCTGAT
*
14231561 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
**
14231587 CTTAGACTGGGAATGATTTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14231613 C
1 C
14231614 GGTCCAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14231808 original size:244 final size:243
Alignment explanation
Indices: 14231374--14231838 Score: 678
Period size: 244 Copynumber: 1.9 Consensus size: 243
14231364 AATATAAGGG
* * * *
14231374 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACTGAAATT
1 CCAAGTACCAGCACCAATCGCACATCACGTGCGCACACCCCCCGGCCCCCCCGATCACCGAAATG
* * *
14231439 CTAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCAGTGAAGAAAAATACA
66 CCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATACA
* * * * *
14231504 GCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACT
131 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCAGTCCGATCTTACACT
*
14231569 GGGAATGAACTCCGTATGCTTAGACTGGGAATGATTTCCATATGCGGT
196 GGGAAAGAACTCCGTATGCTTAGACTGGGAATGATTTCCATATGCGGT
* *
14231617 CCAAGTACCAGCACCAATCGCACATCACGTGCGCACACCCCCCTGGCCCCCCTGATCGCCGAAAT
1 CCAAGTACCAGCACCAATCGCACATCACGTGCGCACACCCCCC-GGCCCCCCCGATCACCGAAAT
* * * * * **
14231682 GCCAATGCCGTCGGTCAGGTTCTCCTGCGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGT
65 GCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATAC
* * *
14231747 GGCACCGGCACATGCGCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCAGTCCGATCTTACAC
130 AGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCAGTCCGATCTTACAC
* *
14231812 TGTGAAAGAACTTCGTATGCTTAGACT
195 TGGGAAAGAACTCCGTATGCTTAGACT
14231839 AGCAATGAAC
Statistics
Matches: 194, Mismatches: 27, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
243 41 0.21
244 153 0.79
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.19
Consensus pattern (243 bp):
CCAAGTACCAGCACCAATCGCACATCACGTGCGCACACCCCCCGGCCCCCCCGATCACCGAAATG
CCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATACA
GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCAGTCCGATCTTACACT
GGGAAAGAACTCCGTATGCTTAGACTGGGAATGATTTCCATATGCGGT
Found at i:14233351 original size:900 final size:896
Alignment explanation
Indices: 14231614--14234516 Score: 4027
Period size: 900 Copynumber: 3.2 Consensus size: 896
14231604 TTCCATATGC
* * * *
14231614 GGTCCAAGTACCAGCACCAATCGCACATCACGTGCGCACACCCC-CCTGGCCCCCCTGATCGCCG
1 GGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACC--GCCCCCCCGATCGTCG
** *** *
14231678 AAATGCCAATGCCGTCGGTCAGGTTCTCCTGCGATGCTCCGATGATGGTGCCCCGGCGAAGAAAA
64 AAACCCCAATGCCGTCGGTCAGGTTCTCCTGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAA
* * *
14231743 ATGTGGCACCGGCACATG-CGCGAGCCCAGCATGTGCTACCGCAACCCTCGATCC-AGTCCGATC
129 ATGCGGCACCAGCACATGCCG-GAGCCTAGCATGTGCTACCGCAACCCTCGATCCGA-TCCGATC
* * * * * * * *
14231806 TTAC-ACTGTGAAAGAACTTCGTATGCTTAGACTAGCAATGAACTCCGTATGGCTAAGTCAACCC
192 TT-CGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCG
* * *
14231870 ACGAAACGAGCGTGCAGGCGCTCAGTCGGTCAGAGGGGTGGGATGCGCAAGTCAG-GGATCGATC
256 ACGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGG-CGGATGCGCAAG-CCGTGGATCGATC
* * * * * *
14231934 GGGTCCCTCTCTGCATGCTGT-CAATCCTACTGCCGTAACCTTTGGTTCGGTCTGATCTTAGACT
319 GGGTCCCCCTCTGCGTGCT-TCCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACT
* * ** * * *
14231998 GGGAATGAACTCCGTATACCTCAGCCAACCGATGAAATGAGCAGACGGGCGGGCGGGCACTACTC
383 GGGAATGAACTCCGTATGCCTAAGCCAACCGAAAAAACGAGCGGACGGGCGGGCGGGCACTACGC
*
14232063 TGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGCT-GGTTTAGGCACATC
448 TGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TGGGTTTAGGCACATC
* * * *
14232127 TTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCATAAACC
512 TTTATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
14232192 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTGC
577 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
* * * *
14232257 GATTCAAGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCT
642 GGTTC-AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
14232322 TGTATTTTTTTTGGCATGCACAAAAAAACTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGAC
706 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
14232387 CATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
771 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
14232452 CAAATGCTCTTTAAGGGTGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
836 CAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
14232514 GGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCAGCCCCCCCGATCGTCGA
1 GGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACC-GCCCCCCCGATCGTCGA
** * * * * * **
14232579 AACCCCAACACCGCCGGCCAAGTTCTCCTGCGATGCTCTGGCAACGGTGCGTCGACGAAGAAAAA
65 AACCCCAATGCCGTCGGTCAGGTTCTCCTGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAA
* * *
14232644 TGCAGCGCCAGCACATGCCGGAGCCTAGCATGTGCTACCGTAACCCTCGATCCGATCCGATCTTC
130 TGCGGCACCAGCACATGCCGGAGCCTAGCATGTGCTACCGCAACCCTCGATCCGATCCGATCTTC
* *
14232709 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTGACGA
195 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCGACGA
*
14232774 AATGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGTGGATC-AGTCGGGT
260 AACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGC-GGATGCGCAAGCCGTGGATCGA-TCGGGT
* * * * *
14232838 CCCCCTCTGTGTGCTTCCGATCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
323 CCCCCTCTGCGTGCTTCCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
* * *
14232903 TGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGGCGGGCGGGCACTACGCTGGCC
388 TGAACTCCGTATGCCTAAGCCAACCGAAAAAACGAGCGGACGGGCGGGCGGGCACTACGCTGGCC
*
14232968 AGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATA
453 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATA
14233033 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
518 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
14233098 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTGTCATGATTTTTAAAACTTTTTACGGTTCG
583 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-
* * * **
14233163 AGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACCTGGTAGACATGATTTTTGTATT
647 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
14233228 TTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
712 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
14233293 AAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
777 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
14233358 CTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
842 CTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
14233414 GGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCGATCGCCCCGATCGTCGG
1 GGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCG-CCCCCCCGATCGTCGA
*
14233479 AACCCCAATGCCGTCGGTCAGGTTCTCCTACGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAA
65 AACCCCAATGCCGTCGGTCAGGTTCTCCTGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAA
* * * * * *
14233544 TGCGGCACCAGCATATGCCAGAGCCTAGCATGTGCTGCCACAACCCTCGATCCGATCTGATCTTT
130 TGCGGCACCAGCACATGCCGGAGCCTAGCATGTGCTACCGCAACCCTCGATCCGATCCGATCTTC
* *
14233609 GACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCGACAA
195 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCGACGA
* * * *
14233674 AACGAGCGTGCGGGCACTCAATCGGCTAG-GGGGCGAGATGCGCAAGCCGTGGATCGATCGGGTC
260 AACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCG-GATGCGCAAGCCGTGGATCGATCGGGTC
* * * * *
14233738 CCCCTCTGCGTACTACCGATCCTACTACGGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
324 CCCCTCTGCGTGCTTCCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* *
14233803 GAACTCCGTATGCCTAAGCCAACCGAAAAAACGAGCGGACGGGCGGGCGGGCACTATGCCGGCCA
389 GAACTCCGTATGCCTAAGCCAACCGAAAAAACGAGCGGACGGGCGGGCGGGCACTACGCTGGCCA
* * ** * *
14233868 GAGAGACGGGATTCGCAAGCCGTGGATCCATAGGGTCATAGGTGGGTTTAGGCATATCTTAATAT
454 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATAT
* * *
14233933 TTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGT
519 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * **
14233998 AAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTTTGGTTCAG
584 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCA-
14234063 GATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
648 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
14234127 TTGTTGGCATGCATAAAAAAATTCAGTTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGA
713 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* ** *
14234192 ACAAAGTGTCCCCATTTCAGACACTTTCTTGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGC
778 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
14234257 -CTTTTCAGGGGGTGTAAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAA
843 TC-TTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * * * *
14234312 GGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCAGACCCC-CCGTCCCCCTGATCATCGGA
1 GGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCGCCCCCCCGATCGTCGAA
* ** *
14234376 ACCCTAATGCCACCGGTCAGGATCT-C--CGA-----C-G--ATGGTGCCCC-AGCGAAGAAAAA
66 ACCCCAATGCCGTCGGTCAGGTTCTCCTGCGATGCTCCGGCAATGGTGCCCCGA-CGAAGAAAAA
** * * * * * * * *
14234429 TGCGGCACCAGCACATGCCTAAGCCCAGCATGTCCTGCCACAACCCTCGGTCTGGTCCGATCTTA
130 TGCGGCACCAGCACATGCCGGAGCCTAGCATGTGCTACCGCAACCCTCGATCCGATCCGATCTTC
*
14234494 GACTGGGAATGAACTCCATATGC
195 GACTGGGAATGAACTCCGTATGC
14234517 GTAAGCCAAC
Statistics
Matches: 1793, Mismatches: 193, Indels: 49
0.88 0.09 0.02
Matches are distributed among these distances:
884 1 0.00
885 96 0.05
887 1 0.00
888 1 0.00
893 3 0.00
895 1 0.00
896 35 0.02
897 4 0.00
898 255 0.14
899 344 0.19
900 1045 0.58
901 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCGCCCCCCCGATCGTCGAA
ACCCCAATGCCGTCGGTCAGGTTCTCCTGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCCGGAGCCTAGCATGTGCTACCGCAACCCTCGATCCGATCCGATCTTCG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCGACGAA
ACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGATGCGCAAGCCGTGGATCGATCGGGTCCC
CCTCTGCGTGCTTCCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGAAAAAACGAGCGGACGGGCGGGCGGGCACTACGCTGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTT
CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGAT
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
Found at i:14234756 original size:26 final size:26
Alignment explanation
Indices: 14234724--14234780 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
14234714 GACGACTCGT
* * *
14234724 TTTTTATATTTCATGATTTTTGAAAC
1 TTTTTATAGTTCAGGATTTTTGAAAA
* *
14234750 TTTTTATGGTTCAGGATTTTTTAAAA
1 TTTTTATAGTTCAGGATTTTTGAAAA
14234776 TTTTT
1 TTTTT
14234781 TCGGAAGGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.60
Consensus pattern (26 bp):
TTTTTATAGTTCAGGATTTTTGAAAA
Found at i:14235529 original size:709 final size:699
Alignment explanation
Indices: 14233769--14235796 Score: 3158
Period size: 701 Copynumber: 2.9 Consensus size: 699
14233759 CTACTACGGT
* * *
14233769 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAAAAA
1 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAA
* *
14233834 CGAGCGGACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCCAT
66 CGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCGAT
** *
14233899 AGGGTCATAGGTGGGTTTAGGCATATCTTAATATTTCTGCATGCCAATGCCATTTTAATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCAAATCTTAATATTTCTGCATGCCAATGCCATTTTAATGGCTTG
*
14233964 TAAATTCATACAATGGTCCCTTAAGCTTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTTTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTTTA
** *
14234029 TTTTTCATGATTTTCAAAACTTTTTTTGGTTCAGGATTTTTTAAAATTTTTCGGAAGGAGTTTTG
261 TTTTTCATGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTCGGAAGGAGTTTTG
*
14234094 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGTTAAAA
326 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAA
* *
14234159 ACTCGAAGTATACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTCTTGG
390 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTATTGG
* * * * *
14234224 CTACTGGCAGCAAACCTGTAAAATCTCAAAAGCCTTTTCAGGGGGTGTAAGTTCTCGAGGTTTGA
455 CTACTGGCAG-AAAACTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
14234289 TGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT-TATGTGCGCAGAC
519 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCT-TGTGCGCACAC
* * *
14234353 CCCCCGTCCCCCTGATCATCGGAACCCTAATGCCACCGGTCAGGATCTCCGACGATGGTGCCCCA
583 CCCCCGGCCCCCCGATCATCGGAACCCTAATGCCACCGGTCAGGATCTCCGACGATGGTACCCCA
* * *
14234418 GCGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATGTCCTGCCAC
648 GCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTCCTACCAC
* * * * *
14234470 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCGTAAGCCAACCGAAGAAA
1 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAA
* * *
14234535 CGAGCGGGCGGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCGAT
*
14234600 AGGGTGGTAGGTGGGTTTAGGCAAATCTTAATATTTCTGCATGCCAATGCCATTTTAATGACTTG
131 AGGGTGGTAGGTGGGTTTAGGCAAATCTTAATATTTCTGCATGCCAATGCCATTTTAATGGCTTG
14234665 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTTTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTTTA
*
14234730 TATTTCATGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
261 TTTTTCATGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTT
*
14234795 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTGAAAAAAAATTCAGCTAAA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-CAAAAAAAATTCAGCTAAA
* *
14234860 AACTCGAAGTGTACATGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAAACACTTTATTG
389 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTATTG
* *
14234925 GCTACTGGCAGGAAACTTGTAAAATCTCAAATGCTTTTTAAGGGTGTGTGAGTTCTCGAGGTTTG
454 GCTACTGGCAGAAAAC-TGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
14234990 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCTTGTGCTCACAC
518 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCTTGTGCGCACA-
* ** * *
14235055 CCACCCCGGCCCCCCCGATCATCGAAACCCTAATGCTGCCGGTCATGTTCTCCGACGATGGTACC
582 CC-CCCCGG-CCCCCCGATCATCGGAACCCTAATGCCACCGGTCAGGATCTCCGACGATGGTACC
* * * *
14235120 CCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGC
645 CCAGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTCCTACCAC
* * *
14235175 AACTCTCAGTCCGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAA
* * * *
14235240 CGAGCGTACAGACGGGCGGGCGGGCACTACGCTGGCCAGAGAGATGGGATTTGCAAACCGTGGAT
66 CGAGCG----GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGAT
* * * *
14235305 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGACAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTAATATTTCTGCATGCCAATGCCATTTTAATGG
* * * *
14235370 CTTGTAAATTCATATAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTT
* * * *
14235435 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGAAGGAG
257 TTTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATT-TTTCGGAAGGAG
* * *
14235500 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAACAATTCAGCT
321 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCT
*
14235565 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCTCATTTCAGACACTTTA
386 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTA
* *
14235630 ATGGCTACTGGCAGCAAAACTGTAAAATCTTAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGT
451 TTGGCTACTGGCAG-AAAACTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGT
*
14235695 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCA
515 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCTTGTGCGCA
* * *
14235760 CAGCCCCCGGCCCCTCGATCATCGGAACCCCAATGCC
580 CACCCCCCGGCCCCCCGATCATCGGAACCCTAATGCC
14235797 GTCGGACAGG
Statistics
Matches: 1216, Mismatches: 98, Indels: 22
0.91 0.07 0.02
Matches are distributed among these distances:
701 291 0.24
702 251 0.21
703 4 0.00
704 5 0.00
705 182 0.15
706 6 0.00
707 1 0.00
708 198 0.16
709 278 0.23
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (699 bp):
AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAA
CGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCAAATCTTAATATTTCTGCATGCCAATGCCATTTTAATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTTTA
TTTTTCATGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTATTGGC
TACTGGCAGAAAACTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCTTGTGCGCACACCCC
CCGGCCCCCCGATCATCGGAACCCTAATGCCACCGGTCAGGATCTCCGACGATGGTACCCCAGCG
AAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTCCTACCAC
Found at i:14237725 original size:26 final size:26
Alignment explanation
Indices: 14237674--14237726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14237664 CCGGTCTGAT
*
14237674 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
14237700 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
14237726 C
1 C
14237727 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:14238594 original size:26 final size:26
Alignment explanation
Indices: 14238558--14238608 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14238548 GGTCCGATCA
* *
14238558 TAGATTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
14238584 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14238609 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14240387 original size:26 final size:27
Alignment explanation
Indices: 14240358--14240412 Score: 103
Period size: 26 Copynumber: 2.1 Consensus size: 27
14240348 GTCCGATCTT
14240358 AGACTGGGAATGAACTCCGTATG-CTA
1 AGACTGGGAATGAACTCCGTATGCCTA
14240384 AGACTGGGAATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTCCGTATGCCTA
14240411 AG
1 AG
14240413 TCAACCCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCGTATGCCTA
Found at i:14240959 original size:902 final size:900
Alignment explanation
Indices: 14236796--14248361 Score: 12649
Period size: 903 Copynumber: 13.0 Consensus size: 900
14236786 CCGATCCGAT
* * * * * * *
14236796 CTTAGACTGCGAATGAACTTCGTATGCCAAAGTTAACCCACAAAACAAGCGTGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14236861 CGTCTAGAGGGGCGGGATGCGCAAGCCGGGGAAT-GG-TCGGGTCCCCTTCTACGTGCTGCCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGG-ATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * * *
14236924 CTTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGATTGAACTCCGTATGCGTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * *
14236989 AACCGATGAAACGAGCGGGCGGGCGGGTGGGCAGGCACTATGCCAGCCAGAGAGACAGGATGCGC
193 AACCGACGAAACGAGCGGGCGGGCGGGCCGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
14237054 AAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCATGGCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
14237119 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
14237184 ACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGGTTCAAGATTTTTTAAAATTT
387 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA-CGGTTCGGGATTTTTTAAAATTT
* *
14237249 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
14237314 AAAAAATTCAGCTAAGAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14237379 TCCAGACACTTTAATGGCTACTGTCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
14237443 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCACA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
14237508 CATCATGTGCGCACACCCTCCCCGACCCTCCGATCGGCAGAACCCCAATGCTGTCGGTCAGGTTC
711 CATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGC-GCCGGTCAGGTTC
** * ** * ** * *
14237573 TCCGATGATGCTCC-AGTGATGGTGCCCCGGTGAAGAAAAATGTGGCACTGGCACGTGCCTGAGC
774 TCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
14237637 CTAGCATGTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
838 CCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14237700 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** ** * * * *
14237765 CAGCC-GAGGGGCAAGATGCGTAAGCCGGGGATCGGCCAGGTCCCTTTTTGCATGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
14237829 TGCTGCTGCAACCCTCAGTCTGATCCGATCTTAGACTGGTAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14237894 CCGACGAAACGAGTGGGCGGACGGG-CGGACGGGCACTACGTCGACCAAAGAGATGGGATGCGCA
195 CCGACGAAACGAGCGGGCGGGCGGGCCGG-C-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** * *
14237958 AGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAAGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
14238023 ATTTTTATGGCTTGTAAATTCCTATAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14238088 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
14238153 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTTATCCCTGTATTTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14238218 AACATTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTG--AAAA------CCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14238275 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14238340 GTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCATGTACCAGCACCCATCGTACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
14238405 TCATGTGCGCACACCCCCCGG-CCCCCTAATCGTCGGAACCCTAAT--GCC-GTC-GG---T-CA
713 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCGCCGGTCAGGTTCTCCG
* * *
14238461 G-G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAAC
778 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
14238524 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCATAGATTGGGAATGAACTTCGTATG
843 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
14238582 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCTCGCCCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** * *
14238647 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCTGACTCTCCATGCTGCCGAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCG-ATC
* * * * * *
14238712 CTGCTGCCCCCAACCC-CCGTCCGGTCCTATGGTTAGACTGTGAATG-ACTCCGCATGCCTAAGC
130 CTGCTG-CCGCAACCCTCGGTCCGGT-CGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * *
14238775 CAACCGACGAAACGAGCGAACGGGCGGGCGGGCCGTCACTATGCCGGCCAGAGAGACGGGATGCG
192 CAACCGACGAAACGAGCGGGCGGGCGGGCCGG-CGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
14238840 CAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCCATGCCAAT
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAAT
*
14238905 GCCCATTTTTATGGCTTGTAAAACTCAT-CACATGGT-CCTTAAGCCTTCATCGTGAAG-TTCAT
320 G-CCATTTTTATGGCTTGT-AAATTCATACA-ATGGTCCCTTAAGCCTTCA-CGTGAAGTTTCAT
* ** *
14238967 GGCAAAGACGACTCG-TTTATA-TTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTA
381 GGC-AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
* ** * *
14239030 AAATTTTTTCAGAAGGAGTTTTGGCATCAAACGTGGTAGACATGATCCTTGTATTTTTGTTGGCA
445 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
14239095 TGCACAGAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTGT
510 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
14239160 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG-AAAATCTCAAATGCTCTTTAAGG
575 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
14239224 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
640 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *** * *
14239289 ATCGCACATCATTTGCGCACACCCCCTAACCCCCCCGATCATCGGAACCCCAATGCCGCCGGTTA
705 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCA
* * * * * *
14239354 GGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGTACCAACACTTGCCA
769 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
14239419 GAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATG
834 GAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
14239484 TG
899 TG
* * * * *
14239486 CTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
14239551 CGCCCAGAGGGGTGGGATGTGCAAGTCGGGGATCGG-TCGGGTCCCCCTCTGTGTGCTGGAGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATC
** * ** ** * * * *
14239615 CTGCTGTTGCAACCCTTGGTCCGGTTTTATCTTAGGTTTGGAATGAACTCCATATGGCTACGCCA
130 CTGCTGCCGCAACCCTCGGTCCGG-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14239680 ACCGACGAAATGA----GCGGACGGG-C-G-TGCACTAC-CTCGGCCAGAGAGATGGGATGCGCA
194 ACCGACGAAACGAGCGGGCGGGCGGGCCGGCGGCACTACGC-CGGCCAGAGAGACGGGATGCGCA
* *
14239737 AGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
14239802 ATTTTTATGACTTTTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
14239867 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCCCGATTTTTTAAAATATTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
14239932 TCGAAAGAAGTTTTGGCCCCAAACTTGGCAGACGTGAACCTTGTATTTTTTTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14239997 AAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14240062 CAGACATTTTAATGGCTACTGACAGCAACCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
14240127 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
14240192 TCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCTGAATGTCACCGGTCAGGTTCTCC
713 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCAGGTTCTCC
* * *
14240257 GGCGTTGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAG
777 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
14240322 CAAGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
842 CATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14240381 CTAAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAAGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14240446 CGACCAGAGAGG-GGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
*
14240510 TGCTGCCGCAACCCTCGGTCCAGTCGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14240575 CCGATGAAATGAACGGGCGGGCGGGCCGGCGGCCATTACGCCGGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGCGGGCGGGCGGGCCGGCGG-CACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
14240640 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGTACATCTTCATATTTCTGTGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14240705 TTTTTATGGCTTGTAACTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
14240770 GACTCGTTTTCTATTTTTCATGATTGTTGAAATTTTTTGCTGTTTGGGATTTTTTAAAATTCTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* ** * * *
14240835 CAGAAGGAGTTTTTACCCCAAACTTGGTAGACATGATCCTTGTACTTTTGTTGGCATGCAAAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14240900 AAAATCAGCTAAAAACTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14240965 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGTGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
14241030 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** *
14241095 CATGTGCGCACACCCCCAGGCCCCCCCGATCGTCGGAACCCTAATACCGTTGATCAGGTTCTCCG
714 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT-GCGCCGGTCAGGTTCTCCG
* * * ** *
14241160 ACGATGCTCGGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
778 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
**
14241225 ATGTGCTGCCACAACCCTCGGT-C--T--GA---T-G-C-------G-A-----T-T-
843 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14241258 -TTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14241322 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGTTCCCCTTCTACGTGCTACAGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14241387 TGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCGAA
131 TGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * ** * *
14241452 CTGACGAAACGAGCGGGCTGACAGGCGGGCAGGCGCTACGTAGGCCAGAGAGATGGGATGTGCAA
195 CCGACGAAACGAGCGGGCGGGCGGGCCGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
14241517 GCCGTGTATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCACGACAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
14241582 ATTTTATGGCTTGTAAATTCATACAATGGCCCCGTAAACCTTCACGTGAAGTTTAATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * *
14241647 GACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAACTTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
14241712 -GGAAGGATTTTTGGCCACAAACTTGGCAGACGTAATCCTTGTATTTTTATTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
14241776 AAATTTAGATAAAAACTCGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTATCCCTATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14241841 AGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTATGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
14241906 TTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAACGGCCAAGTACAAGCACCCATCGTACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
14241971 CATGTGTGTGCAC-CCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTC
714 CA--TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCAGGTTCTC
* * * * *
14242035 CGGTGATGCTCCGACAATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCA
776 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
14242100 GCATGTGCTGCTGCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTCCGTATG
841 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
14242160 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACACACGAAATGAGCGTGCAAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * ** ** *
14242225 AGGCCAAAGGGGCAAGATGCACAAGCCGTGCATC-AATCGGGTCCCCCTCAACGTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * *
14242289 CTGCTACCGAAACCCTCATTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
14242354 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGTGCA
194 ACCGACGAAACGAGCGGGCGGGCGGGCCGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14242419 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATTCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * **
14242484 ACTTTTATGGCATGTAAATTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
14242549 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATCTTTT-AAACTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
14242613 TGGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14242678 AAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14242743 CAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14242808 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATTGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14242873 TCATGTGCGTACACCCCCCAGCCCCCCCGATCATCGGAACCCCAATGCCGCTGGTCAGG---T--
713 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCAGGTTCTCC
* * * * **
14242933 -----T-CTCCGACGATGGTGCCCCGGCGTAGAAAAATGCAGCACC-GACACATGCCTGA-TTC-
777 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCA
* * * *
14242989 -CATGTGCTGTCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
841 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
14243048 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14243113 CGGCCAGAGAGGTGGGATGCGTAAGCTGGGGATCGACTGGGTTCCCCTCTGCGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * **
14243178 TGCTGCCGCAACCCTTGGTCTGATCCAATCTTAGACAGGGAACAAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14243243 CCGACGAAACGAGTGGGTGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGATGGGATTCGCAA
195 CCGACGAAACGAGCGGGCGGGCGGGCCGGCG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *** **
14243308 GCCGTGTATCGATAGGGTGATAGGTGGGTTTACTTACATCTTCATATTTCTGTGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
14243373 TTTTCATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14243438 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCAGGATCTTGTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
14243503 CGGAAGGAGTTTTTGCTCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
14243568 TAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAGTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14243633 AGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATATCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14243698 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * ** *
14243763 CATGTGCCCACGCCCTCCGG-CCCCCCGATCGTTGGTTCCCCAATGCCGCTGGTCAGGTTCTCCG
714 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCAGGTTCTCCG
* * * *
14243827 GCGACGCTCCGACGATGGTGCCCCGGA-GAAGAAAAATGTGGCACCAGCACATGCTCGATCCCAG
778 GCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
14243891 CATGTGCTGCC-CAACCCTCGGTCTGGTCCTATCTTAGAATGGGAATGAACTCCGTATG
842 CATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14243949 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14244014 CGGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCGG-TCGGGTCCCCCTCTACGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATC
** *
14244078 CTGCTGCCGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * **
14244143 ACTGACGAAATGAGCGGGCGGGCGAG-C-G-GGCACTACATCGGCCAGAGAGACGGGATGCGCAA
194 ACCGACGAAACGAGCGGGCGGGCGGGCCGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
14244205 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
14244270 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
14244335 GACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
*
14244400 CGGAAGGAGTTTTGGCCCCAAACTTGG-ATGACGTGATCCTTGTATTTTTG-TGACCATTTG-A-
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTGATCCTTGTATTTTTGTTG-GCA--TGCAC
** ** * * * ** * * * * * ** **
14244461 AAAAAGTTTC--C---CCATTC-CA--G-AC-A-CTTTAATGGCTACTGGCAGCAAATCTGT-AA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-A-AAAAAGTGTCCC
* * * * ** ** * * * *
14244514 AATCTCAAATGCTCTTTAA-GG-----GG--G------TGTAAGTTCT-TGA-GGT-TTGATGAG
578 CATTTCAGA--CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * ** * * ** ** * ** *
14244562 GG-ATAAG-----G-GG--CCA--A--TATA-AGGGCCAAGTACCAGCACCCA-TTGCA-CA-TC
641 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCC
* **** * ** * * * *
14244610 ATGTGCGCACACCCCCCG-GC-C-CCCCCGATCGTCAGAACCTCAAT--TCTG--CCGGTCAAGT
705 A--T-CGCACATCATGTGCGCACACCCCC---CGGC--CCCCCCGATCGTCGGAACC--CCAA-T
* * * * * * * * ** *** * * *
14244668 TCTCC-GACA-ATGCTCCGACGATGGTGCCCCGACAAATAAAAATGTAGCAAC--AG-CACATGC
759 GCGCCGGTCAGGTTCTCCGGCGA---TGCTCCGAC-GAT---GGTGCCCCGACGAAGAAAAATG-
* * * ** * * * * * ** * **
14244728 CCGACCCCAGTATGTGCTAACGTAACCC-TC-GGT-CTG--GT--CCGATC--TTAGACTAGGA-
816 -CGGCACCAGCACATGC--CCG-AGCCCAGCATGTGCTGCCGTAACC-CTCGGTCCG-GTCCGAT
* * ** * **
14244783 ATGA-ACTCCGTATG--CTTAG-A--
875 CTTAGACTGGGAATGAACTCCGTATG
*
14244803 ------CTGGGAATGAACTCCGTATGCCTAAGTCAACCC-CTGAAACGAGCGTGCAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAG
* * * * *
14244861 CTGGCCAGAGGGGCGGGAGGTGCAAGCCGGGGATCAG-TCGGGTCCCCCTCTGCGTGCTGCCAAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGAT
** * * **
14244925 CCTGCCACCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCAATATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** *
14244990 AACAGACGAAACGAGCGGGCGGGCTTG-C-G-GGCACTATGCCGGCCAGAGAGACGGGATGCGCA
193 AACCGACGAAACGAGCGGGCGGGCGGGCCGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * ** *
14245052 AGCCGTGGATC-ATTAGGATGGTAGGTGGGTTTAGGTATAACTTCATATTTCTGTGTTCCAATGC
258 AGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
14245116 CATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
14245181 ACGACTCGTTTTCGATTTTTCATGATTTTTGAAAGTTTTTACGGTTCGAGATTTTTTCAAATTTT
387 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
14245246 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGGCATGCTA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTT-GGCATGC-A
*
14245311 -AAAAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
514 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
14245375 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGT
579 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14245440 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCG
644 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
14245505 CACATCATGTGCGCACACCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCTACCGATCAGGTT
709 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC-GCCGGTCAGGTT
* * * ** ** * *
14245570 CTCCGGTGATGCTCCGGCGATGGTGCCTCGGTGAAGAAAAATATGGCAGCAGCACATGCCCAAGC
773 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * *
14245635 CTAACATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTCAGATTGGGAATGAACTCTGTATG
838 CCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14245698 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGGGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
14245763 CGGCCAGAGGGACGGGATGCGCAAATCAGGGATTGGTTGGGTCCCCTTTTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * *
14245828 TGCTACCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCTAA
131 TGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
14245893 CCGACAAAACGAGCGGACGGGCGGG-CGGTCGGGCACTACGTTGACCAGAGAGACGGGATGCACA
195 CCGACGAAACGAGCGGGCGGGCGGGCCGG-C-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14245957 AGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGGACATCTTCGTATTTC--CATGTGCCAATG
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA--TGCCAATG
* *
14246020 CCATTTCTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCAACATGAAGGTTTTCAAT-
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAA-G-TTTC-ATG
* * **
14246083 G--AGACGACT-G-TTTCTA-TTTTCAAGA-TTTTCAAACCTTTTTTGTGGTTTCGGGA-TTTTT
382 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-C-TTTTTACGG-TTCGGGATTTTTT
* * * * *
14246141 AAAAATTTTTCAGAAGGA---TT-GCGCCCAAACCAATGGTAGTATCAATGATCGCTTGTGACTT
444 AAAATTTTTTCGGAAGGAGTTTTGGC-CCCAAA-C-TTGGTAG-A-C-GTGATC-CTTGT-ATTT
* *
14246202 TT-TTGGCAATGCAAAAAATAAATTCAGCTAAAAA-TCGAAG-GTACAAGATTTTGTTGGCCATT
501 TTGTTGGC-ATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-TGACCATT
* * * * * *
14246264 TGAATAAAGTGTGCTCCATTTCATAACACATTCATGGC-AGAT-GCAGCAAAACCTGTAAAATCT
563 TGAAAAAAGTGT-CCCCATTTCA-GACACTTTAATGGCTA-CTGGCAGC-AAACCTGTAAAATCT
* * *
14246327 CAAGAATGATCTTTAAGGGGGTG-GAGTTCTTGA-GTTTGAT-A-GGATA-GGTGCCAATATAA-
624 C-A-AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
14246386 GGCCAAGTGACGA-CACCCATCGCACATCATGTGCGCACACCGTCCCCTG--CCCCC-ATCGTCG
687 GGCCAAGT-ACCAGCACCCATCGCACATCATGTGCGCACACC--CCCCGGCCCCCCCGATCGTCG
* * *
14246447 GACACCCCAATGCTGCCGATCAGGTTCT-C--CGATGAT---A-GA----GCCCC-AGGGAAGAA
749 GA-ACCCCAATGC-GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAA
* * * * *
14246500 AAATACGGAACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTGGGTCCGATCTGATC
811 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATC
14246565 TTAGACTGGGAATGAACTCCGTATG
876 TTAGACTGGGAATGAACTCCGTATG
* * * *
14246590 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *** * *
14246655 CGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGCCAAGTCCCCCTTTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * **
14246720 TGGTACCGCAACCCTCTG-CTGGTCGGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14246784 CCGACGAAACGAGCGGGCAGGTGGG-CGG-GGTACTACGTCGGCTAGAGA-ACGGGATGCCGCAA
195 CCGACGAAACGAGCGGGCGGGCGGGCCGGCGGCACTACGCCGGCCAGAGAGACGGGATG-CGCAA
* * * *
14246846 GCCGTGGATCGATAGCGTGGTAGGTGGGTTCAGGCACATCTTCA-AGTTTTTGCGTGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCC
14246910 A-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTGTGAAGTTTCATGGCAAG
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAG
* *
14246974 ACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATATT
387 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
14247039 TTCGGAAGGAGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTTTTTGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
**
14247104 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACGTTTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14247169 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * **
14247234 AGTTCTCGAGGTTTGATGGGGGATAAGGGGCCAACATAAGGGCTAAGTACCAGCACCCATCATAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * *
14247299 ATCATGTGCGCACA-CCCCCTACCCCCCCTGATCATCGGAACCCCAATTCCGCCGGTCAGGTTCT
712 ATCATGTGCGCACACCCCCCGGCCCCCCC-GATCGTCGGAACCCCAA-TGCGCCGGTCAGGTTCT
* * * * **
14247363 CTGGTGATGCTCCGACGATGGTGCCCCGACGAAGAGAAAGGTAGCACCAGCACATGCCCGAGCCC
775 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** *
14247428 AGCATGTGCTATCGTAA----C--T-C--T-CAATC-----C---G---G---TCCG-AT-
840 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14247463 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAATGAGCTTACCGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14247528 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACTGAGTCCCCCTCTGCGTGCTGGCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * *
14247593 TGTTGCTGCAACCCTCAGTTCAGTCTGATCTGAGATTGGGAATGAACTCCGTATGCCTGAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
14247658 CCGACAAAACAAGCGGGCGGGCGGGTAGGCGGGCAGTACGCTGGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGCGGGCGGGCGGGCCGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14247723 GCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14247788 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGAT
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
14247853 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
14247918 CGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTTTTTTTTTTTGGCATGCACAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCATGCACAAA
* *
14247983 AAAATTCAGCTAAAAACTCGAAGTTTACAAGCTTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
14248048 TAGACACTTTAATGGCTACTGACAGCAAAACTATAAAATCTCAAATGCTCTTTGAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14248113 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** ** * * *
14248178 TCATGTGCGCACACCCCCCGGCCCCCTTGATCACCGGAACCCCAAAGCCGTCGGTCAGGTTCTCT
713 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCAGGTTCTCC
* * * * * * * *
14248243 AGTGATGCTCCAACGACGGTGCCCCGACGAAGGAAATTGGGGCACCAGCACATGCCCGAGCCTAG
777 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
14248308 CATGTGCTGCCGCAACCCTCGGTCGGGTCCGATCTTAGATTGGGAATGAACTCC
842 CATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
14248362 ATGTGCCTAA
Statistics
Matches: 8948, Mismatches: 1351, Indels: 728
0.81 0.12 0.07
Matches are distributed among these distances:
847 2 0.00
848 446 0.05
849 6 0.00
850 12 0.00
851 1 0.00
852 1 0.00
855 3 0.00
856 8 0.00
857 6 0.00
858 30 0.00
859 38 0.00
860 18 0.00
861 22 0.00
862 13 0.00
863 3 0.00
864 16 0.00
865 7 0.00
866 5 0.00
867 4 0.00
871 3 0.00
872 15 0.00
873 135 0.02
874 63 0.01
875 19 0.00
876 303 0.03
877 637 0.07
878 376 0.04
879 11 0.00
880 1 0.00
881 6 0.00
882 181 0.02
883 60 0.01
884 185 0.02
885 220 0.02
886 111 0.01
887 135 0.02
888 655 0.07
889 321 0.04
890 60 0.01
891 133 0.01
892 367 0.04
893 130 0.01
894 371 0.04
895 490 0.05
896 9 0.00
897 266 0.03
898 12 0.00
899 107 0.01
900 24 0.00
901 431 0.05
902 809 0.09
903 1063 0.12
904 315 0.04
905 172 0.02
906 41 0.00
907 41 0.00
908 12 0.00
909 17 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCCGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCGCCGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14242172 original size:26 final size:26
Alignment explanation
Indices: 14242134--14242186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14242124 CTGATCCAAT
*
14242134 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
14242160 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
14242186 C
1 C
14242187 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:14243959 original size:26 final size:26
Alignment explanation
Indices: 14243923--14243975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14243913 CTGGTCCTAT
14243923 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
14243949 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14243975 C
1 C
14243976 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14244800 original size:26 final size:26
Alignment explanation
Indices: 14244771--14244823 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14244761 CTGGTCCGAT
14244771 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14244797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14244823 C
1 C
14244824 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14246593 original size:26 final size:26
Alignment explanation
Indices: 14246564--14246616 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14246554 CCGATCTGAT
14246564 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14246590 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14246616 C
1 C
14246617 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14248290 original size:878 final size:879
Alignment explanation
Indices: 14244445--14248391 Score: 4235
Period size: 901 Copynumber: 4.4 Consensus size: 879
14244435 ATCCTTGTAT
* ** *
14244445 TTTTGTGACCATTTGAAAAAAGTTTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAATCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAACT
* *
14244510 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
* *
14244575 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
131 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATC
* * * * *** * *
14244640 GTCAGAACCTCAATTCTGCCGGTCAAGTTCTCCGACAATGCTCCGACGATGGTGCCCCGACAAAT
196 GTCGGAACCCCAATGCTGCCGGTCAGGTTCT-CGGTGATGCTCCGACGATGGTGCCCCGACGAAG
** * * * *
14244705 AAAAATGTAGCAACAGCACATGCCCGACCCCAGTATGTGCTAACGTAACCCTCGGTCTGGTCCGA
260 AAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA----C-GTC---T-CGA
14244770 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
316 TC-----C---G---G-A-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
14244835 C-CTGAAACGAGCGTGCAGGCGCTCAG-CTGGCCAGAGGGGCGGGAGGTGCAAGCCGGGGATC-A
368 CAC-AAAACGAGCGTGCCGGCGCTCAGTC-GGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGA
* * * * * **
14244897 GTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCCACCGCAACCCTTGGTTCGGTCCGATCTTAGA
431 CT-GAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGA
* * * **
14244962 CTGGGAATGAACTCAATATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGC--TTGCGGGCACT
495 CTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGGGCGGGCACT
* * *
14245025 ATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-ATTAGGATGGTAGGTGGGTTTAGGTA
560 ACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGTA
* * ** * *
14245089 TAACTTCATATTTCTGTGTTCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTA
624 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
14245154 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCGATTTTTCATGATTTTTGAAAGTTT
689 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTT
* * * *
14245219 TTACGGTTCGAGATTTTTTCAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
754 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGA
* *
14245284 TCCTTGTATTTTTTTTTGGGCATGCTA-AAAAAAATTCAGCTAAAAACTCGAAGTTTACAAGA
819 TCCTTGT-TTTTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14245346 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAACT
* *
14245411 GTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
*
14245476 ATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATC
131 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATC
* * * * **
14245541 GTCGGAACCCCAATGCTACCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCGGTGAAG
196 GTCGGAACCCCAATGCTGCCGGTCAGGTTCT-CGGTGATGCTCCGACGATGGTGCCCCGACGAAG
** * * * * * *
14245606 AAAAATATGGCAGCAGCACATGCCCAAGCCTAACATGTGCTGCCGCAACCCTCGGTCCGATCCGA
260 AAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA----C-GT-C--T-CGA
14245671 TCTCAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
316 TC-C------GG-AT---C-C-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * ** ** * * ** * **
14245736 CACGAAACGAGTGGGTGGGCGCTCAACCGGCCAGAGGGACGGGATGCGCAAATCAGGGATTGGTT
368 CACAAAACGAGCGTGCCGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACT
* * * *
14245801 GGGTCCCCTTTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTTGGTCCGATCTTAGACTG
433 GAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTG
* * *
14245866 GGAATGAACTTCATATGCCTAAGCTAACCGACAAAACGAGCGGACGGGCGGGCGGTCGGGCACTA
498 GGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGG-GG-CGGGCACTA
* * * * *
14245931 CGTTGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGGACA
561 CGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACA
* *
14245996 TCTTCGTATTTC--CATGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGT-CCTTA
626 TCTTCATATTTCTGCA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
14246058 AGCCTTCAACATGAAGGTTTTCAAT-G--AGACGACT-G-TTTCTA-TTTTCAAGATTTTCAAAC
689 AGCCTTC-ACGTGAA-G-TTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
** * *
14246117 CTTTTTTGTGGTTTCGGGA-TTTTTAAAAATTTTTCAGAAGGA---TT-GCGCCCAAACCAATGG
750 C-TTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC-CCCAAA-C-ATGG
* *** *
14246177 TAGTATCAATGATCGCTTG-TGACTTTTTTGGCAATGCAAAAAATAAATTCAGCTAAAAA-TCGA
810 TAG-A-C-GTGATC-CTTGTTTTTTTTTTTGGC-ATGCACAAAA-AAATTCAGCTAAAAACTCGA
14246240 AG-GTACAAGA
869 AGTGTACAAGA
* * * * * *
14246250 TTTTGTTGGCCATTTGAATAAAGTGTGCTCCATTTCATA-ACACATTCATGGC-AGAT-GCAGCA
1 TTTTG-TGACCATTTGAAAAAAGTGT-CCCCATTT--TAGACACTTTAATGGCTA-CTGGCAGCA
* *
14246312 AAACCTGTAAAATCTCAAGAATGATCTTTAAGGGGGTG-GAGTTCTTGA-GTTTGAT-A-GGAT-
61 AAA-CTGTAAAATCTC-A-AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
14246372 AGGTGCCAATATAA-GGCCAAGTGACGA-CACCCATCGCACATCATGTGCGCACACCGTCCCCTG
123 AGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCATCGCACATCATGTGCGCACACC--CCCCGG
* * *
14246435 -CCCCC--ATCGTCGGACACCCCAATGCTGCCGATCAGGTTCTC--CGATGAT---A-GA----G
185 CCCCCCTGATCGTCGGA-ACCCCAATGCTGCCGGTCAGGTTCTCGGTGATGCTCCGACGATGGTG
* ** * *
14246487 CCCC-AGGGAAGAAAAATACGGAACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTG
249 CCCCGA-CGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA--C--
14246551 GGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
309 -GT-C--TC-GATC-----C---G---G-A-TCCGTATGCTTAGACTGGGAATGAACTCCGTATG
*
14246616 CCTAAGTCAACCCACAAAATGAGCGTG-CGAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
356 CCTAAGTCAACCCACAAAACGAGCGTGCCG-GCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
** * ** * * * *
14246680 CTGGGGATCGGCCAAGTCCCCCTTTGCGTGCTGTCGATCCTGGTACCGCAACCCTCTGCT-GGTC
420 CCAGGGATCGACTGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTCGGTC
* ** * * * *
14246744 GGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGTGGG
485 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGG
* * * *
14246809 CG-GGGTACTACG-TCGGCTAGAGA-ACGGGATGCCGCAAGCCGTGGATCGATAGCGTGGTAGGT
550 GGCGGGCACTACGCT-GGCCAGAGAGACGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
14246871 GGGTTCAGGCACATCTTCA-AGTTTTTGCGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATAC
613 GGGTTTAGGTACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
14246934 AATGGTCCCTTAAGCCTTCACTGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGA
677 AATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* *
14246999 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAAC
741 TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
14247064 ATGGTAGATGTGATCCTTGTATTTTTTTTT-GCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
806 ATGGTAGACGTGATCCTTGTTTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
14247128 TGTACAAGA
871 TGTACAAGA
** * * *
14247137 TTTTGTGACGTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAACT
* *
14247202 GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAAGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
* * ** ***
14247267 ACATAAGGGCTAAGTACCAGCACCCATCATACATCATGTGCGCACACCCCCTACCCCCCCTGATC
131 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATC
* * *
14247332 ATCGGAACCCCAATTCCGCCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGACGAAG
196 GTCGGAACCCCAATGCTGCCGGTCAGGTTCTC-GGTGATGCTCCGACGATGGTGCCCCGACGAAG
* * * *
14247397 AGAAA-GGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAAC-TCTCAATCCGG-TC
260 AAAAATGG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACGTCTCGATCCGGATC
* * * *
14247459 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAATGAGCTTACCGGCG
324 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCCGGCG
*
14247522 CTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACTGAGTCCCCCTCTGCGTGCTGG
389 CTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACTGAGTCCCCCTCTGCGTGCTGT
* * * * * * * * *
14247587 CGATCCTGTTGCTGCAACCCTCAGTTCAGTCTGATCTGAGATTGGGAATGAACTCCGTATGCCTG
454 CGATCCTGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTA
* *
14247652 AGCCAACCGACAAAACAAGCGGGCGGGCGGGTAGGCGGGCAGTACGCTGGCCAGAGAGACGGGAT
519 AGCCAACCGACAAAACGAGCGGGCGGGCGGG--GGCGGGCACTACGCTGGCCAGAGAGACGGGAT
*
14247717 GCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCA
582 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCA
*
14247782 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGG
647 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
14247847 CAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAA
712 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA
14247912 TTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTTTTTTTTTTTGGCATG
777 TTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTTTTTTTTTTTGGCATG
* *
14247977 CACAAAAAAATTCAGCTAAAAACTCGAAGTTTACAAGC
842 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14248015 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAAACT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAACT
* * * *
14248080 ATAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
* *
14248145 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCTTGATC
131 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATC
** * * * * * *
14248210 ACCGGAACCCCAAAGCCGTCGGTCAGGTTCTCTAGTGATGCTCCAACGACGGTGCCCCGACGAAG
196 GTCGGAACCCCAATGCTGCCGGTCAGGTTCTC-GGTGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * * * * *
14248275 GAAATTGGGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAAC-CCTCGGT-CGGGTCC
260 AAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACGTCTCGATCCGGATCC
* * * * * *
14248338 G-AT-CTTAGATTGGGAATGAACTCCATGTGCCTAAGCCAACCGACGAAACGAGCG
325 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCG
14248392 GGCGGACGGG
Statistics
Matches: 2594, Mismatches: 333, Indels: 261
0.81 0.10 0.08
Matches are distributed among these distances:
873 132 0.05
874 62 0.02
875 4 0.00
876 1 0.00
877 210 0.08
878 420 0.16
879 2 0.00
881 1 0.00
882 17 0.01
883 11 0.00
884 32 0.01
885 32 0.01
886 43 0.02
887 80 0.03
888 164 0.06
889 19 0.01
890 40 0.02
891 88 0.03
892 194 0.07
893 13 0.01
894 4 0.00
895 2 0.00
896 7 0.00
897 6 0.00
899 52 0.02
900 18 0.01
901 476 0.18
902 34 0.01
903 91 0.04
904 63 0.02
905 171 0.07
906 38 0.01
907 36 0.01
908 14 0.01
909 17 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (879 bp):
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAACT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATC
GTCGGAACCCCAATGCTGCCGGTCAGGTTCTCGGTGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACGTCTCGATCCGGATCCG
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCCGGCGCT
CAGTCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACTGAGTCCCCCTCTGCGTGCTGTCG
ATCCTGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
CCAACCGACAAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
TTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTTTTTTTTTTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
Found at i:14249959 original size:26 final size:26
Alignment explanation
Indices: 14249923--14249975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14249913 CCAGCCTGAT
*
14249923 CTTAGACTGGGAAAGAGCTCCGCATG
1 CTTAGACTGGGAAAGAACTCCGCATG
* *
14249949 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGCATG
14249975 C
1 C
14249976 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGCATG
Found at i:14251535 original size:897 final size:893
Alignment explanation
Indices: 14249047--14252290 Score: 4154
Period size: 895 Copynumber: 3.6 Consensus size: 893
14249037 CCGGTCCGAT
* * * ** *
14249047 CTTAGACTGGGAATGAACTCTGTATGCGTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTGCGGACGCTCAGC
* * * **
14249112 CGGCCAGAGGGGCGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCATTCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * * * * * *
14249177 TACTGCCGCAA-CCTTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTTCGTATGGCC-ACGCC
131 TGCTACCGCAACCCTT-GGTCCGGTCTGATCTTAGACTGGGAATGAACTTCATAT-GCCTAAGCC
* * * *
14249240 AACCGATGAAACGAGCGTGAGGGCAGGAGGGCGGGCACTACGCTGGCCATAGAGACAGGATGCGC
194 AACCGACGAAACGAGCG-GA---C----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * *
14249305 GA-TTCGTGGATTGATAGGGTGATAGGTGGGTTTAGGCTCATCTTCATATTTCT-CTGTGCCAAT
251 AAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-GTGCCAAT
* *
14249368 GCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTCAAGCCTTCACGTGAAGTTTCATGGCA
314 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
14249433 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATTGTTCGGGATTTTTTAAAATT
379 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATT
* * ** * * *
14249498 TTTCCAGAAGGAGTTTTGGCAACAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGCCATGCGC
444 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
14249563 AAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAA
509 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
14249628 TTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGT
574 TTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
14249692 GTGAGTTCTCAAGGTTTGATGTGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCA
638 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
* * * * * *
14249757 CACATCATGTGCGCACACGCCCTGG-CCCACCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
703 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTA
* * * **
14249821 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGGTCGAGC
768 CTCCGGCG-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * * * * *
14249886 CCAGCATGTGCTGTCGCAACCTTTGATCCAG-CCTGATCTTAGACTGGGAAAGAGCTCCGCATG
832 CCAGCATGTGCTGTCGCAACCCTCG-GCCAGTCC-GATCTTAGACTGGGAATGAACTCCGTATG
* * *
14249949 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTGCGGACGCTCAGC
* * *
14250014 CGGCCAGAGGGGC-AGGATGCGCAAGCCGGGGATCGA-TCGGG-CTCGCCTCTACGTGCTGCCGA
66 CGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATC-ATTCGGGTC-CCCCTCTGCGTGCTGCCAA
* * * * *
14250076 TCCTGCTACCGTAACCTTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
128 TCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGC
** * * * *
14250141 CAACCGATAAAAC-A--AG-CGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGT
193 CAACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGT
* * *
14250202 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAAGCTATTTTT
258 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
14250267 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * **
14250332 GTTTT-TATTTTTGACGATTTTTAAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGAA
388 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAA
* * * * *
14250396 GGAGTTGTGGCCCCGAATTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
14250461 CAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
14250526 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGTGTTTGAGTTCTT
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
14250591 GAGGTTTGACGAGGGATACGGGGCCAATATAGGGGCCAAGCACCAGCACCCATCACACATCATGT
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
* * * *
14250656 GCGCACACCCTTCCCGGCCCCCCCGATCACCGAAACCCCAATGCCACCGGTTAGGTACTCCGACG
713 GCGCACACCC--CCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTACTCCGGCG
* *
14250721 TTGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATG
776 TT-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * *
14250786 TGCTGTCGCAACCCTCGGCCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
840 TGCTGTCGCAACCCTCGGCC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * *
14250841 CTTAGA-TCGAGAATGAACTCCGTATGCCTAACTCAATTCACGAAACGAGCGTGCCGACACTAAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTGCGGACGCTCAG
* * * *
14250905 CTGGCCAGAGGGGTGAGATGCGCAAGTCGGGGATCATTCGGGTCCCCCTCTGTGTGCTGCCAATC
65 CCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCATTCGGGTCCCCCTCTGCGTGCTGCCAATC
* *** * * *
14250970 TTGCTGTTGCAACCCTTGGTCCGGTCTAATCTTAGACTGGGAAAGAACTTCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCA
* *
14251035 ACCGACGAAACGAGCGGACGGGCGAGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
195 ACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
*
14251100 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* *
14251165 GGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
14251230 TTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
14251295 AGTTTTGGCCCCAAACTTGGTACATGTAATCCTTGTATTTCTGTTGGCATCCACAAAAAAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
14251360 GCTAAACACTCAAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
14251425 TTAATGGCTACTGGTAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
14251490 GGTTTGATGAGTGATAGAGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * * * * * *
14251555 GCACACCCCCCGGTCCCCCCGATTGTCGAAACCCCAATGTCGTCAGTCAGGTTCTCCGGCGATTC
715 GCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTACTCCGGCG-TTC
* * * * * *
14251620 TTCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATACCCAAGCCCAGAATGTGCT
779 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* * * *
14251685 G-CTGTAACCCTCTGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATG
844 GTC-GCAACCCTC-GGCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14251736 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTGCGGACGCTCAGC
* * * ** * * *
14251801 CGACCAGAGGGGCGGGATGCGTAAGCCGGGGATC-TAAAGGGTCCACCTCTGCGTGCTACCGATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCAT-TCGGGTCCCCCTCTGCGTGCTGCCAATC
* * *
14251865 TTGCTACCGTAACCCTCT-GTCTGGTCTGATCTTAGACTGGGAATGAA-TTCCATATGCCTAAGC
130 CTGCTACCGCAACCCT-TGGTCCGGTCTGATCTTAGACTGGGAATGAACTT-CATATGCCTAAGC
* ***
14251928 CAACCGACGAAACGAGCAAGTGGGCGGGCGGGCGAGCAGTACGCCGTTTAGAGAGACGGGATGCG
193 CAACCGACGAAACGAGC----GGACGGGCGGGC-A-C--TACGCCGGCCAGAGAGACGGGATGCG
* * * * *
14251993 CAAGCCGTGGATTGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATA
250 CAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
* * * * *
14252058 CCATTTTCATGGCCTGTAAATTCATACAATGGTCCTTTAAACCTTCACGTGAAGTTTCATGGCGA
315 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
14252123 GACGAGTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACT-GTTTGGGATTTTTTTAAATT
380 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-TGGTTTGGGATTTTTTAAAATT
* * *
14252187 TTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCAC
444 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
14252252 AAAAAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTT
509 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
14252291 AGACTGGGAA
Statistics
Matches: 2038, Mismatches: 265, Indels: 77
0.86 0.11 0.03
Matches are distributed among these distances:
889 292 0.14
890 161 0.08
891 10 0.00
892 306 0.15
893 4 0.00
894 5 0.00
895 311 0.15
896 176 0.09
897 294 0.14
898 1 0.00
899 10 0.00
900 1 0.00
901 6 0.00
902 167 0.08
903 293 0.14
904 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTGCGGACGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCATTCGGGTCCCCCTCTGCGTGCTGCCAATCC
TGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAA
CCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
CACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTACTCCGGCGTTCTC
CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGT
CGCAACCCTCGGCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14251746 original size:26 final size:26
Alignment explanation
Indices: 14251710--14251762 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14251700 CCAATCCAAT
14251710 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14251736 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14251762 C
1 C
14251763 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14252325 original size:26 final size:26
Alignment explanation
Indices: 14252289--14252340 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14252279 GCACAAGATT
14252289 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14252315 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14252341 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14254358 original size:586 final size:589
Alignment explanation
Indices: 14253226--14254398 Score: 1811
Period size: 586 Copynumber: 2.0 Consensus size: 589
14253216 GGTCTGGTCT
*
14253226 TAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAACGGACGGGCGGGCGGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAACGGACGGGCGGGCGGGCG
* * * * *
14253291 GGCACTACACCGGCTAGAGAGGCAGGATGCGCAAGCCGTAGATCGATATGGTGGTAGGTGGGTTT
66 GGCACTACACCAGCCAGAGAGACAGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTT
* * *
14253356 AGGCACAGCTTCATATTTCTGCATGCCAATGAAATTTTTATTGCTTGTAAATTCATAAAATGGTC
131 AGGCACAGCTTCATATTTCTACATGCCAATGAAATTTTTATGGCTTGTAAATTCATAAAACGGTC
* * *
14253421 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGCTCTTCATGATTTTCAAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTACTCTTCACGATTTTCAAA
* ***
14253486 TCTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
261 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
14253551 CGTGATCCTTGTATTTTTTTTGGCATGCACGAAAACATTTAGCTAAAAACTCGAAGTGTACAGGA
326 CGTGATCCTTGTATTTTTGTTGGCATACACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14253616 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCT
* *
14253681 GAAAAATCTCAAATGTCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
456 GAAAAATCACAAATGTCATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
14253746 ATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCTC-CTGGCCCCCCCG
521 ATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCGCCGACCCCCCCG
14253809 ATCA
586 ATCA
* *
14253813 TAGACTGGGAATGAACTCC-TATGCCTAAGCC-ATCCTACGAAACGAGCGTG-CGGGCGGGCGGG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT-CGACGAAACGAACG-GACGGGCGGGCGGG
* * *
14253875 CGGGCACTACTCCAGCCAGAGAGAC-GGCATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGG
64 CGGGCACTACACCAGCCAGAGAGACAGG-ATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGG
* ** ** *
14253939 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACG
128 TTTAGGCACAGCTTCATATTTCTACATGCCAATGAAATTTTTATGGCTTGTAAATTCATAAAACG
* *
14254004 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTC
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTACTCTTCACGATTTTC
* * * *
14254069 AAAACTTTTTGCGGTTCAAGCTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAGCTTGGT
258 AAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
*
14254134 AGACGTGATCCTTGTATTTTTGTTGGCATACGCAAAAACATTCAGCTAAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAACATTCAGCTAAAAACTCGAAGTGTACA
*
14254199 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
* *
14254264 CCTGTAAAATCACAAATG-CTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGCTGAGGGATAGGGG
453 CCTGAAAAATCACAAATGTC-ATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14254328 TCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGCCGACCCC
517 GCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCGCCGACCCC
14254393 CCCGAT
582 CCCGAT
14254399 TGCCGGAACC
Statistics
Matches: 530, Mismatches: 50, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
585 5 0.01
586 489 0.92
587 24 0.05
588 12 0.02
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (589 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAACGGACGGGCGGGCGGGCG
GGCACTACACCAGCCAGAGAGACAGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTT
AGGCACAGCTTCATATTTCTACATGCCAATGAAATTTTTATGGCTTGTAAATTCATAAAACGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTACTCTTCACGATTTTCAAA
ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATACACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCT
GAAAAATCACAAATGTCATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCGCCGACCCCCCCG
ATCA
Found at i:14254560 original size:26 final size:26
Alignment explanation
Indices: 14254531--14254581 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14254521 CCGGTCCGAA
14254531 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
14254557 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTAGGAATGAACTCCGTAT
14254582 TCCTCAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:14256322 original size:26 final size:26
Alignment explanation
Indices: 14256293--14256345 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14256283 CCAGTCCGAT
14256293 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14256319 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14256345 C
1 C
14256346 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14257639 original size:26 final size:26
Alignment explanation
Indices: 14257601--14257653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14257591 CCGATCCGAT
*
14257601 CTTAGACTAGGAATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
14257627 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
14257653 C
1 C
14257654 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:14258934 original size:897 final size:895
Alignment explanation
Indices: 14257198--14260321 Score: 4517
Period size: 897 Copynumber: 3.5 Consensus size: 895
14257188 GAATGAACTC
* * *
14257198 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACCAAAAAATTCAGCTAGAAACTCGAAG
1 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
14257263 TGTACAAGATTTTGTGACCATTTGAAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGG
66 TGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
14257328 CAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGA
130 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
14257393 TAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCATAACCCCCCTG
195 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCA-CACCCCCCCG
** *** * *
14257458 GCTCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGTTCC-AGGGATGG
259 GC-CCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGCTCCGA-CGATGG
*
14257522 TGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
322 TGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * * *
14257587 CGGTCCGATCCGATCTTAGACTAGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
387 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
* * *
14257652 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCAGAGGGGCAGGATGGGCAAG
452 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
* * * * * * *
14257717 CTGGGGGTCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCAGTCCGGTC
517 CCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTC
* * * *
14257782 TGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGACGGGCGAG
582 TGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGAG
* * * *
14257847 CACTATGTCGGCCAGAGAGACGGGATGCACAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAG
647 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
14257912 GCACATCTACATATGTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCC
712 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
14257977 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAAC
777 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
14258042 TTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAAGAGTTTCT-CCCCCAAA
842 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGAGTTT-TGGCCCCAAA
* *
14258096 CTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
1 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
14258161 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAAACACTTTAATGGCTACTGG
66 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGG
* * *
14258226 CAGTAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGA
130 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
14258291 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATACGCGCACTA-CCCCCTG
195 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCAC-ACCCCCCCG
** * * * *
14258355 GCCCTCCCGATCGTCGGAACCCCAATGCCACC-GATAAGGTTCTCCAACGATGCTCCGACGATGG
259 GCCC-CCCGATCACCGGAACCCCAATGCCGCCAG-TCAGGTTCTCCGACAATGCTCCGACGATGG
* ** * * * *
14258419 TGCCTCGACGAAGAAAGCTACGACACTAGCACATGCCCAAGCCCAGTATGTGCTGCTGCAACCCT
322 TGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
14258484 CGATCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTAA
387 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
* * * *
14258549 GCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTCAGCCGGCCAGAGGGGCAGGATGCGTAAG
452 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
* *
14258614 CCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCCGCAACCCTCAGTCGGGT-
517 CCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTC
* *
14258678 TCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGTGGGCAGGCGA
582 T-GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGA
* *
14258743 GCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTA
646 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
14258808 GGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
711 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14258873 CTTAAGCCTGCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAA
776 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * *
14258938 CTTTTTGTGGTTCAAGA-TTTTTAAAAGTTTTTTCGGAAGGAGTTTTGGCCCCAAA
841 CTTTTTGCGGTTCAGGATTTTTTAAAA-TTTTTTCGGAAAGAGTTTTGGCCCCAAA
* *
14258993 CTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
1 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
14259058 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACTGGA
66 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
14259123 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
131 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * *
14259188 AGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCGTTGCACATCATGTC-CGTACACCCCCCCGA
196 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-CGCGCACACCCCCCCGG
* *
14259252 CCCCACCGATCACCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACAATGCTCTGACGATGGTG
260 CCCC-CCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGCTCCGACGATGGTG
** * * *
14259317 CCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC-
324 CCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
*
14259381 AGTCCGGTCCGATC-TATGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTAT
389 A-TCCGGTCCGATCTTA-GACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
* *
14259445 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGTCAGTTGGCCAGAGGGGCAGGATGCGCAAG
452 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
* * * * * *
14259510 CCGAGGATCCGCCGGGTCCCCCTATACGTGCTGCTGATCCTACTACCGCAACCCTCAGTCCGGTC
517 CCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTC
* * *
14259575 TAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGTGGGCGGGTGGG
582 TGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGGGC----GGG
* * * * *
14259640 CGGGCACTACACCGGTCAGAGAGACGAGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGT
643 CGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
14259705 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
708 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
14259770 TTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
773 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
14259835 AAACATTTTGCTGTTCAGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCCAAA
838 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAA
* * * *
14259893 CTTGGTAGATGAGACCCTCGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
1 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
14259958 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGT
66 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14260023 AGCAAACCTGTAAAATCTCAAATGCTTTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
131 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
14260088 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCACACACCCCCCCCGG
196 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACA-CCCCCCCGG
* * * * * * *
14260153 CCCCCCCGATCACCGGAACCCCAATGCTGTC-GATCAGGTTCTTCGGCAATGCTCTGGCGATCGT
260 -CCCCCCGATCACCGGAACCCCAATGCCGCCAG-TCAGGTTCTCCGACAATGCTCCGACGATGGT
* * * * * *
14260217 GCCCCGGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCACAACCCTC
323 GCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
14260282 AGTTCAC--TCTGATATTACACTGGGAATGAACTCCGTATGC
388 -GATC-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14260322 CTAAGCCAAC
Statistics
Matches: 1999, Mismatches: 199, Indels: 53
0.89 0.09 0.02
Matches are distributed among these distances:
895 5 0.00
896 479 0.24
897 674 0.34
898 220 0.11
900 458 0.23
901 154 0.08
902 8 0.00
903 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCCGGC
CCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCC
CCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGAT
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGA
GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGAT
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGAGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAA
Found at i:14261929 original size:26 final size:26
Alignment explanation
Indices: 14261900--14261952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14261890 CCGGTCCGAT
14261900 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14261926 CTTAGACTGGGAATTAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14261952 C
1 C
14261953 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14262521 original size:892 final size:887
Alignment explanation
Indices: 14260271--14263679 Score: 3883
Period size: 851 Copynumber: 3.9 Consensus size: 887
14260261 GTATGTGCTA
* * * * * *
14260271 CCACAACCCTCAGTTCACTCTGATATTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CCAC-ACCCTCAATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGA-
* *
14260336 A-AAACTAGCAGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
64 AGAAAC--G-AGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
14260400 TCGATAGGGTGGTAGGTGGTAGGTGGGTTTAGGCACA-CATTCATATTTATGCATGCCAGTGCCA
122 TCGATA----GG-A-GTGGAAGGTGGGTTTAGGCACATC-TTCATATTTCTGCATGCCAATGCCA
* *
14260464 TTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTCCACATGAAGTTTCATGGCAAGAC
180 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGAC
* * ** ** *
14260529 GACTCGTTTTTTATTTTTCATAATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
245 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * * * *
14260594 CGGAAGGAGTTTTGGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCCCAAA
310 CGGAAGGTGTTTTGG-CCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
** *
14260659 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCTATTT
374 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14260724 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
439 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
14260789 TTTCTCAACGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
504 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACA
* * * *
14260854 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTTGGAACCCCAAT-ACTGTCGGTCAGGTTCTC
569 TCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGTC-GTCGGTCAGATTCTC
* * * * * *** *
14260918 CGACGATTCTCCGACAATGGTGCCCTGGCGAACAAAAATGTGGCACCAGCACATGCCTGAGCCCA
633 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCA
* * * * * *
14260983 GCATGTGATGCCGCAACCCTTGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAA
698 GCATGTGCTGCTGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
14261048 ATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCC
763 ACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCC
* * * * *
14261113 AGAGGGGC-AGGTTGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCT-GTG-TGCTGC-C-G
828 AGAGGGGCGATGATGCGCAAGCTGGGGATCGGC-GGGTCCCCCTCTCGTGCTGCTCCTCTG
** * * * * *
14261169 -CA-ACCCTCGTTTCAGTCCGATCTTAGAC-AAGGAATGAACTCCGCATGCCCAAGCCAACC-AA
1 CCACACCCTCAATCCAGTCTGATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGCCAACCGAA
*
14261230 CGAAACGATCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGA
65 -GAAACGA---GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
14261295 TATG-GTGGTAGGCGGGTCTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGG-T
126 TAGGAGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
14261358 TGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
191 TGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
* *
14261423 TATTTTTCATGATTTTTGAAACTTTTTACGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAT-T
256 TATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG-TGT
* * * *
14261487 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTGTTTTTTGGCATGCAC-AAAAAATTCATC
320 TTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAGC
*
14261551 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTT
384 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
*
14261616 ATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
449 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
14261681 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGAACCCATCGCACATCATGTGCGC
514 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGC
* * * *
14261746 ACAACCCCTCGGCCCCCCCGATCGTCGAAAGCCCAATGTCGTCGGTCAGATTCTCCGACGATGCT
579 AC-ACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGTCGTCGGTCAGATTCTCCGACGATGCT
** * * *
14261811 CCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG
643 CCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
14261876 CTGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATT
708 CTGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATT
* * * * *
14261941 AATTCCGTATGCCTAAGTCAACCCACGAAACGAGCATCCAGGCGCTCAGCCGACCAGAGGGGCGA
773 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGA
14262006 -GATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTG
838 TGATGCGCAAGCTGGGGATCGG-CGGGTCCCCCTCT-CGTGCTG-C--TCCT-CTG
14262061 CCACAGCCCTCAATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGAA
1 CCACA-CCCTCAATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGAA
* * * *
14262126 GAAACGA-GTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGTCGTGGATCGATA-G
65 GAAACGAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
14262189 AGTGGAAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
130 AGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * **
14262254 TATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGTGACTCATTTTCTATT
195 AATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
* * *
14262319 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTCGG
260 TTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGG
** * *
14262384 CCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAATAAAATTCAACTAAAAA
325 CCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
14262449 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
390 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
*
14262514 TACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTT-AGGGGGT-T-AGTTCTTCGA-G-TTGA
455 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGA
* ** *
14262574 TGAGGAAATAGAAGGCCAATTATAACGG-CAAGTTTGTACC--AACCCTATCG-ACAT-ATGTG-
519 TGAGG-GATAGGGGGCCAA-TATAAGGGCCAA----GTACCAGAACCC-ATCGCACATCATGTGC
* * * * * * * **
14262633 GCA-TCCCCCC-G---CTCTGATCATAGG-ACGACCC-GTGTCG-CCGT-AGGTT-TCCGGATAA
577 GCACACCCCCCGGCCCCCCCGATCATCGGAAC--CCCAATGTCGTCGGTCAGATTCTCC-GACGA
* * ** * * * *
14262688 TG-GCCGA-GATGGGGCCATGATGAAG-AAAATACAGCATCAGCAGATG---GAG-CCA--TTGG
639 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCAT-G
** * * *
14262744 TTTTG-TAGCAA-CCTCGATCTGGT-TGATCTTAAACTGGGAAATG-A-TCTG-ATG-TTAGACT
703 TGCTGCT-GCAACCCTCGATCTGGTCCGATCTTAGACTGGG-AATGAACTCCGTATGCTTAGACT
* * * * * * * *
14262802 -GGCATATAACT-C-TTTGCCTAAGTC-A--C-C-ATATGAGCGTACGGGTGCTCAACTGGCTAG
766 GGGAAT-TAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAG
* * * * * *
14262859 AGGCGCGATTCATGC-CAATCTGGAGGATCGGACGGGTCTCGCTAC-CATGCTGGCTCCTGCTG
830 AGGGGCGA-TGATGCGCAAGCTGG-GGATCGG-CGGGTCCCCCT-CTCGTGCT-GCTCCT-CTG
** * ** * *
14262921 CTGCTCCC-CAATCTGGTCT--TCTTAGACTG-GGATG-A--CC-TATGCCTAAGCCAACCGACG
1 CCACACCCTCAATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGAAG
* * *
14262978 AAACGA-GCGGGTGGGCACTACACCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGG-
66 AAACGAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGA
*
14263041 GTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
131 GTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
14263106 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCATTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * *
14263171 TTTACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGC
261 TTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGC
* *
14263236 CCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAGC
326 CCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * * *
14263301 TCAAAGTGTACAAGATTTTGTGATCATTTGGAAAAAGTGTCCCCA-TTTCGAACACTTTATTGGC
391 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG-ACACTTTAATGGC
* * * * *
14263365 TATTGGCGGCAAACCTGTAAAATCTTAATTGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
455 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
14263430 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATTGCATATCATGTGCGCACACCC
520 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCC
* **
14263495 CCCGGCCCCCCCGATCACCGGAACCCCAATGTCACCGGTCA-AGTTCT----C--T-CTCCGACG
585 CCCGGCCCCCCCGATCATCGGAACCCCAATGTCGTCGGTCAGA-TTCTCCGACGATGCTCCGACG
* *
14263552 ATGGTGCCCCGACGAAGAAAAATATAGCACCAGCACATGCCCGAGCTCAGCATGTGCTGCTGCAA
649 ATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA
* ** * * *
14263617 CCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGTTTAGACTAGGAATGAACT
714 CCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACT
14263680 GGAAGTGTAC
Statistics
Matches: 2178, Mismatches: 241, Indels: 215
0.83 0.09 0.08
Matches are distributed among these distances:
850 9 0.00
851 411 0.19
852 16 0.01
853 17 0.01
854 23 0.01
855 24 0.01
856 25 0.01
857 18 0.01
858 12 0.01
859 16 0.01
860 17 0.01
861 32 0.01
862 23 0.01
863 39 0.02
864 15 0.01
865 4 0.00
866 14 0.01
867 16 0.01
868 15 0.01
869 3 0.00
870 3 0.00
871 14 0.01
872 16 0.01
873 8 0.00
874 3 0.00
875 2 0.00
878 17 0.01
879 14 0.01
880 7 0.00
881 9 0.00
882 229 0.11
883 405 0.19
884 57 0.03
885 4 0.00
886 3 0.00
887 7 0.00
888 9 0.00
889 24 0.01
890 18 0.01
891 183 0.08
892 275 0.13
893 8 0.00
894 2 0.00
895 107 0.05
896 3 0.00
897 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (887 bp):
CCACACCCTCAATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGAAG
AAACGAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGA
GTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
TTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGC
CCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCC
CCGGCCCCCCCGATCATCGGAACCCCAATGTCGTCGGTCAGATTCTCCGACGATGCTCCGACGAT
GGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACC
CTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGATGATGCGC
AAGCTGGGGATCGGCGGGTCCCCCTCTCGTGCTGCTCCTCTG
Found at i:14265200 original size:59 final size:58
Alignment explanation
Indices: 14265074--14265290 Score: 330
Period size: 58 Copynumber: 3.8 Consensus size: 58
14265064 TTTTGTGTAG
* * *
14265074 GGAAAATTGATACTTTCAACTTTT-CCCAAAAA-TATTTTTTTGAAATTTATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTTAAATTTATTTTTAA
14265130 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-TTTTTTTTTTAAATTTATTTTTAA
* ** *
14265189 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTAGTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTTAAATTTATTTTTAA
* *
14265247 GGAAAATTGATACTTTCAACCTTTCCCTAAAAATTTTTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTT
14265291 GGAAATTTTG
Statistics
Matches: 146, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
56 24 0.16
57 8 0.05
58 59 0.40
59 55 0.38
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTTAAATTTATTTTTAA
Found at i:14265256 original size:58 final size:56
Alignment explanation
Indices: 14265074--14265288 Score: 324
Period size: 59 Copynumber: 3.8 Consensus size: 56
14265064 TTTTGTGTAG
*
14265074 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTGAAATTTATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAATTTATT-TTAA
*
14265130 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATG--TTTTTTTGAAATTTA-TTTTAA
14265189 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTAGTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTG-AAATTTA-TTTTAA
* * *
14265247 GGAAAATTGATACTTTCAACCTTTCCCTAAAAATTTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTT
14265289 TTGGAAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
56 24 0.16
57 16 0.11
58 52 0.35
59 53 0.36
60 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAATTTATTTTAA
Found at i:14265381 original size:17 final size:16
Alignment explanation
Indices: 14265359--14265403 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
14265349 AGTAAAACAA
14265359 AAATAAAAATAAAATT
1 AAATAAAAATAAAATT
* *
14265375 AAGATAAAAAGAATATT
1 AA-ATAAAAATAAAATT
*
14265392 AAATAAACATAA
1 AAATAAAAATAA
14265404 TGTAATAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.22
Consensus pattern (16 bp):
AAATAAAAATAAAATT
Found at i:14265429 original size:31 final size:30
Alignment explanation
Indices: 14265392--14265452 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
14265382 AAAGAATATT
*
14265392 AAATAAACATAATGTAAT-AAATAAAAAAAAC
1 AAATAAACA-AAT-AAATAAAATAAAAAAAAC
14265423 AAATAAACAAATAAATGAAAATAAAAAAAA
1 AAATAAACAAATAAAT-AAAATAAAAAAAA
14265453 ATTCAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 3 0.11
30 3 0.11
31 21 0.78
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.16
Consensus pattern (30 bp):
AAATAAACAAATAAATAAAATAAAAAAAAC
Found at i:14265553 original size:10 final size:10
Alignment explanation
Indices: 14265538--14265562 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14265528 CGGCTTGGGA
14265538 AGCTCGGCTC
1 AGCTCGGCTC
14265548 AGCTCGGCTC
1 AGCTCGGCTC
14265558 AGCTC
1 AGCTC
14265563 AAAGGGGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (10 bp):
AGCTCGGCTC
Found at i:14265829 original size:11 final size:11
Alignment explanation
Indices: 14265813--14265837 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14265803 TCTGGGTTTT
14265813 TTCGTCGGAAG
1 TTCGTCGGAAG
14265824 TTCGTCGGAAG
1 TTCGTCGGAAG
14265835 TTC
1 TTC
14265838 ACCGGAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.20, G:0.32, T:0.32
Consensus pattern (11 bp):
TTCGTCGGAAG
Found at i:14266047 original size:11 final size:11
Alignment explanation
Indices: 14266019--14266050 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
14266009 AATTTCTTCT
*
14266019 CACTCCCAAAA
1 CACTCCTAAAA
14266030 CACTCCTAAAA
1 CACTCCTAAAA
14266041 CACTCCTAAA
1 CACTCCTAAA
14266051 CCTTTTCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.16
Consensus pattern (11 bp):
CACTCCTAAAA
Found at i:14266340 original size:26 final size:26
Alignment explanation
Indices: 14266311--14266368 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
14266301 AAAAATAATA
*
14266311 ATAATTGGATA-AATAAAACAAATCAG
1 ATAATTGAATAGAATAAAACAAA-CAG
* **
14266337 ATAAATGAATAGAATAAAATTAACAG
1 ATAATTGAATAGAATAAAACAAACAG
14266363 ATAATT
1 ATAATT
14266369 AAAAAATAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.59, C:0.05, G:0.10, T:0.26
Consensus pattern (26 bp):
ATAATTGAATAGAATAAAACAAACAG
Found at i:14266498 original size:3 final size:3
Alignment explanation
Indices: 14266490--14266522 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
14266480 ATGTACATAC
14266490 ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
14266523 CAAAAGAAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:14266516 original size:16 final size:16
Alignment explanation
Indices: 14266415--14266522 Score: 59
Period size: 16 Copynumber: 6.8 Consensus size: 16
14266405 AAAAAAAATT
14266415 ATAAT-ATAATAATAA
1 ATAATAATAATAATAA
14266430 AT-AT-ATAACTATATAA
1 ATAATAATAA-TA-ATAA
* * *
14266446 ATATTAACAAAAATAA
1 ATAATAATAATAATAA
14266462 AT-A-AATAAATAAATAA
1 ATAATAAT-AAT-AATAA
* *
14266478 AGATGTACATACATAAT-A
1 ATA-ATA-ATA-ATAATAA
14266496 ATAATAATAATAATAA
1 ATAATAATAATAATAA
14266512 ATAATAA-AATA
1 ATAATAATAATA
14266523 CAAAAGAAGG
Statistics
Matches: 71, Mismatches: 10, Indels: 24
0.68 0.10 0.23
Matches are distributed among these distances:
14 8 0.11
15 15 0.21
16 29 0.41
17 4 0.06
18 6 0.08
19 5 0.07
20 4 0.06
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (16 bp):
ATAATAATAATAATAA
Found at i:14266725 original size:11 final size:10
Alignment explanation
Indices: 14266709--14266749 Score: 55
Period size: 11 Copynumber: 3.9 Consensus size: 10
14266699 AAATTGTCAT
14266709 TTTTTTTTGTG
1 TTTTTTTT-TG
*
14266720 TTTTTTTTTA
1 TTTTTTTTTG
14266730 TTTTTTTTATG
1 TTTTTTTT-TG
14266741 TTTTTTTTT
1 TTTTTTTTT
14266750 TTTACCAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
10 10 0.37
11 17 0.63
ACGTcount: A:0.05, C:0.00, G:0.07, T:0.88
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:14266734 original size:21 final size:21
Alignment explanation
Indices: 14266709--14266749 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14266699 AAATTGTCAT
*
14266709 TTTTTTTTGTGTTTTTTTTTA
1 TTTTTTTTATGTTTTTTTTTA
14266730 TTTTTTTTATGTTTTTTTTT
1 TTTTTTTTATGTTTTTTTTT
14266750 TTTACCAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.00, G:0.07, T:0.88
Consensus pattern (21 bp):
TTTTTTTTATGTTTTTTTTTA
Found at i:14266746 original size:23 final size:22
Alignment explanation
Indices: 14266707--14266751 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
14266697 CAAAATTGTC
14266707 ATTTTTTTTTGTGTTTTTTTTT
1 ATTTTTTTTTGTGTTTTTTTTT
*
14266729 ATTTTTTTTATGTTTTTTTTTTT
1 ATTTTTTTT-TGTGTTTTTTTTT
14266752 TACCAAAGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.87
Consensus pattern (22 bp):
ATTTTTTTTTGTGTTTTTTTTT
Found at i:14266931 original size:41 final size:41
Alignment explanation
Indices: 14266759--14267098 Score: 466
Period size: 43 Copynumber: 8.1 Consensus size: 41
14266749 TTTTACCAAA
* * * *
14266759 GCTCCTCTAAACAGAGGCTCAACAACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-GTAAATT
* * *
14266802 GCTCCTCTAAACAAAGGCACCACAACTTT-GAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* * * *
14266842 GCTTCTCTCAACAGAGGCACCACAACTTTGGAAAAGTTAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
14266884 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* * *
14266925 GCTCCTCTAAATAGAGGCACCACCACTTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTG-GAAAGTAAATT
*
14266968 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
14267009 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTG-GAAAGTAAATT
14267052 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
14267093 GCTCCT
1 GCTCCT
14267099 TGACAATCAT
Statistics
Matches: 273, Mismatches: 18, Indels: 14
0.90 0.06 0.05
Matches are distributed among these distances:
40 33 0.12
41 91 0.33
42 52 0.19
43 97 0.36
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:14266987 original size:84 final size:83
Alignment explanation
Indices: 14266759--14267098 Score: 513
Period size: 84 Copynumber: 4.1 Consensus size: 83
14266749 TTTTACCAAA
* * *
14266759 GCTCCTCTAAACAGAGGCTCAACAACTTTGAGAAACA-TAAATTGCTCCTCTAAACAAAGGCACC
1 GCTCCTCTAAACAGAGGCACCACAACTTTGA-AAA-AGTAAATTGCTCCTCTAAACAGAGGCACC
* *
14266823 ACAACTTT-GAAAATAAATT
64 ACGACTTTGGAAAGTAAATT
* * * *
14266842 GCTTCTCTCAACAGAGGCACCACAACTTTGGAAAAGTTAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
14266907 GACTTTGGAAAGTAAATT
66 GACTTTGGAAAGTAAATT
* *
14266925 GCTCCTCTAAATAGAGGCACCACCACTTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACAAC-TTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
*
14266990 CGACTTTGAAAAGTAAATT
65 CGACTTTGGAAAGTAAATT
*
14267009 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACAAC-TTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
14267074 CGACTTTGGAAAGTAAATT
65 CGACTTTGGAAAGTAAATT
14267093 GCTCCT
1 GCTCCT
14267099 TGACAATCAT
Statistics
Matches: 235, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
81 1 0.00
82 35 0.15
83 58 0.25
84 141 0.60
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGGAAAGTAAATT
Found at i:14268174 original size:7 final size:8
Alignment explanation
Indices: 14268129--14268172 Score: 63
Period size: 8 Copynumber: 5.4 Consensus size: 8
14268119 TCACTTTTTC
14268129 TTTTCATT
1 TTTTCATT
14268137 TTTTC-TAT
1 TTTTCAT-T
14268145 TTTTCTATT
1 TTTTC-ATT
14268154 TTTTCATT
1 TTTTCATT
14268162 TTTTCATT
1 TTTTCATT
14268170 TTT
1 TTT
14268173 CAAGCATAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
7 1 0.03
8 25 0.76
9 6 0.18
10 1 0.03
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTCATT
Found at i:14273082 original size:15 final size:14
Alignment explanation
Indices: 14273053--14273087 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
14273043 TTTCACCTTT
14273053 CTTCT-TCTTTAGC
1 CTTCTCTCTTTAGC
14273066 CTTCTCTCTTCTAGC
1 CTTCTCTCTT-TAGC
14273081 CTTCTCT
1 CTTCTCT
14273088 AGCATTTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.25
14 4 0.20
15 11 0.55
ACGTcount: A:0.06, C:0.37, G:0.06, T:0.51
Consensus pattern (14 bp):
CTTCTCTCTTTAGC
Found at i:14276588 original size:26 final size:26
Alignment explanation
Indices: 14276559--14276611 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14276549 CCGATCCGAT
14276559 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14276585 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14276611 C
1 C
14276612 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14277491 original size:26 final size:26
Alignment explanation
Indices: 14277462--14277514 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14277452 CTGGTCCGAT
*
14277462 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
14277488 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
14277514 C
1 C
14277515 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:14278216 original size:899 final size:901
Alignment explanation
Indices: 14275984--14278469 Score: 3359
Period size: 899 Copynumber: 2.7 Consensus size: 901
14275974 NNNNNNNNNN
14275984 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
1 TTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14276049 CGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTGCGGTTTGGGATTTTTTTCAAGATT
65 CGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTGCGGTTCGGGA-TTTTTT-AAAATT
* *
14276114 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGCGGTAGACGTGATCCTTCTATTTTTCTTGGCATGA
127 TTTTCGGAAGGAGTTTTGGCCCCAAACTT--GGTAGACGTGATCCTTGTATTTTTCTTGGCATG-
* * * *
14276179 AAAGAAAAAATTCAGCCTAAAAACTCGATGTGTACAAGATTTTTGTGACCATTTGAAAAAAAGTG
189 CAA-AAAAAATTCAG-CTAAAAACTCAAAGTGTACAAGA-TTTTGTGACCATTTG-AAAAAAGTA
*
14276244 TCCCCATTCCAGACACTTTAATGGCTACTGACGCAGCAAA-CTGT-AAATCTCAAAATTGCTCTT
250 TCCCCATTTCAGACACTTTAATGGCTACTG--GCAGCAAACCTGTAAAATCTC-AAA-TGCTCTT
* * *
14276307 TAAAGGCGAGTGTGAGTTCTAGAGGTTGTGATGAGGGATAGCGGGCCAATAT-AGGGCCCAAAAT
311 T-AAGG-GAGTGTGAGTTCTCGAGGTT-TGATGAGGGATAGGGGGCCAATATAAGGG-CC-AAGT
* *
14276371 ACCAGCACCCAGTCGCCACATCATGTGTGCACAACCCCCTCTGGC-CCCCATCGATCGTCCGGAA
371 ACCAGCACCCA-TCG-CACATCATGTGCGCACAACCCCC-C-GGCTCCCC--CAATCG-CCGGAA
* * * * * * * ** *
14276435 CCCCAATGCCGCTGGTCTGGTTCTCCGACGAGGGTTCGGCGATGGCGCCCCGATGAAGAAAAATA
429 CCCCAATGCCGC-GGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCTCGGGGAAGAAAAATG
* * *
14276500 CGGCA-CATGCACATGCTCGAGCCCAGCATGT-GGTGCCACAACCTTCGGTCCGATCCGATCTTA
493 CGGCACCA-GCACATGCTCGAGCCCAGCATGTCGGT--CGCAACCCTCGGTCCGGTCCGATCTTA
*
14276563 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
555 GACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
* * * * * * *
14276628 AACGAGCTTACGGGCGCTTAGCCGACCAGAGGGGTGGGA-CGCGCAAGCCGGGGACTGATCGGGT
620 AACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATCACGCAAACCGGGGACAGATCGAGT
* * * * * * * *
14276692 CCACTTTCGCTTGTTACCGATCCTACTACGGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAA
685 CCACTTTCGCATGCTACCGAGCCTACTACGGCAACCCTCAATCCGATCCGATCCTAGACTGAGAA
*
14276757 TGAACTCCGTACGCCTAACCCAACCAACGAAACGAGCGGGCGGGTGGGCAGGCGAGCAATACGCC
750 TGAACTCCGTACGCCTAACCCAACCAACGAAACGAGCGGGCGGGCGGGCA-GCGAGCAATACGCC
** * *
14276822 ACCCAGAGAGACAGGATGCGCAAGCGGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTACATCTT
814 ACCCAGAGAGACAGGATGCGCAAGCCCTGGATCGATAAGGTAGTAGGTGGGTTTAGGCACATCTT
* *
14276887 GATATTTTTGCATGCCAATGCCA
879 CATATTTCTGCATGCCAATGCCA
14276910 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
1 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
14276975 GACTCATTTTCTATTTTCCACGATTTTTTAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTT
66 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
14277040 CAGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCAAAAAA
131 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAA
*
14277105 ACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTT
196 A-ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTC
*
14277170 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAG
260 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
* * *
14277235 TTCTCGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCACCGCACAT
325 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
14277300 CCTATGCGCAC-ACCCCCCGACTCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
390 CATGTGCGCACAACCCCCCGGCTCCCCCAATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCC
*
14277364 GGCGATGCTCCGACGATGGTGCCTCGGGGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
454 GGCGATGCTCCGGCGATGGTGCCTCGGGGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * *
14277429 CATGTACGGTCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
519 CATGT-CGGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
14277494 CAGGGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCGGCCGACC
583 CAGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC
* * * * *
14277558 AGAGGGGCGGGATTAC-CAAATCGGGGATCAG-TCGAGTCCCCTTAT-GCATGCTGCCGAGCCTA
647 AGAGGGGTGGGATCACGCAAACCGGGGA-CAGATCGAGTCCACTT-TCGCATGCTACCGAGCCTA
* * * * * * *
14277620 CTATGGCAACCCTCAATCCGATCCGGTCCTAGATTGAGAATGAACTCTGTATGCCTAAGCCAACT
710 CTACGGCAACCCTCAATCCGATCCGATCCTAGACTGAGAATGAACTCCGTACGCCTAACCCAACC
* * * * * * ** *
14277685 GATGAAATGTGCGGGCGGGCGGGC-G-G-GCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
775 AACGAAACGAGCGGGCGGGCGGGCAGCGAGCAATACGCCACCCAGAGAGACAGGATGCGCAAGCC
* **
14277747 CTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
840 CTGGATCGATAAGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14277809 TTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
1 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14277874 AACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTT
66 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
*
14277939 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
131 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAA
* * *
14278004 CAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTTTCCCCATTTC
195 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTC
*
14278069 AGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAG
260 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
* *
14278133 TTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCGAGTACCAGCACCCATCGCACAT
325 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
14278198 CATGTGCGCACAACCCCCCGGCTCCCCCAATCGCCAGAACCCCAATGCTGCCGGTCAGGTTCTCC
390 CATGTGCGCACAACCCCCCGGCTCCCCCAATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCC
* * * *
14278263 GGTGATGCTCCGGCGATGGTGCCTCGGGGAACAAAAATGCAGCACCAGCACAAGCTCGAGCCCAG
454 GGCGATGCTCCGGCGATGGTGCCTCGGGGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * *
14278328 CATGT-GCTGCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
519 CATGTCGGT-C-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
14278392 ACCGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGTCGGCC
582 ACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC
14278457 AGAGGGGTGGGAT
647 AGAGGGGTGGGAT
14278470 GCGTAAGCCG
Statistics
Matches: 1394, Mismatches: 148, Indels: 63
0.87 0.09 0.04
Matches are distributed among these distances:
897 2 0.00
898 77 0.06
899 606 0.43
900 8 0.01
901 1 0.00
902 2 0.00
903 304 0.22
904 12 0.01
905 5 0.00
906 5 0.00
907 6 0.00
908 13 0.01
909 2 0.00
910 13 0.01
911 25 0.02
912 21 0.02
913 4 0.00
914 16 0.01
915 7 0.01
916 43 0.03
917 15 0.01
918 26 0.02
919 8 0.01
920 30 0.02
922 31 0.02
923 6 0.00
924 13 0.01
925 60 0.04
926 33 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAA
AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACAACCCCCCGGCTCCCCCAATCGCCGGAACCCCAATGCCGCGGTCAGGTTCTCCGG
CGATGCTCCGGCGATGGTGCCTCGGGGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
TGTCGGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAG
GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
GGGTGGGATCACGCAAACCGGGGACAGATCGAGTCCACTTTCGCATGCTACCGAGCCTACTACGG
CAACCCTCAATCCGATCCGATCCTAGACTGAGAATGAACTCCGTACGCCTAACCCAACCAACGAA
ACGAGCGGGCGGGCGGGCAGCGAGCAATACGCCACCCAGAGAGACAGGATGCGCAAGCCCTGGAT
CGATAAGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
Found at i:14278390 original size:26 final size:26
Alignment explanation
Indices: 14278361--14278413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14278351 CCGGTCTGAT
*
14278361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
14278387 CTTAGACCGGGAATGAACTTCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
14278413 C
1 C
14278414 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:14279113 original size:26 final size:26
Alignment explanation
Indices: 14279075--14279127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14279065 CCAGTCCGAT
* *
14279075 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14279101 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14279127 C
1 C
14279128 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14280240 original size:6 final size:6
Alignment explanation
Indices: 14280229--14280257 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14280219 TAATTGAGGA
14280229 AAAATC AAAATC AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAAT
14280258 AGAAAGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:14280420 original size:59 final size:59
Alignment explanation
Indices: 14280292--14280690 Score: 508
Period size: 58 Copynumber: 6.7 Consensus size: 59
14280282 TCTTGTGTAG
*
14280292 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-TATTTTTTTG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCT-TTTTTTTGAAAATTTATTTTTAA
*
14280350 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATCTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATTTTTAA
*
14280409 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTGAAAATTTACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-C-TTTTTTTTGAAAATTTATTTTTAA
* * * *
14280470 GAAAAATTGATACTTTCAACTTTT-CTCCAAAAAT-ATTTTTTGGAAATTTATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCT-CAAAAATCTTTTTTTTGAAA---ATTTAT-TTTTAA
* * * *
14280532 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAATTTTGATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTT-ATTTTTAA
* **
14280592 GGGAAATTGATACTTTCAACTTTTCCTCAAAAA-C-CCTTTTTG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATTTTTAA
* *
14280648 GGAAAATTGATACTTTCAATTTTTCC-CTAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATCTTTTTTTT
14280691 TGAATTTTTT
Statistics
Matches: 302, Mismatches: 24, Indels: 30
0.85 0.07 0.08
Matches are distributed among these distances:
55 1 0.00
56 37 0.12
57 5 0.02
58 60 0.20
59 49 0.16
60 43 0.14
61 58 0.19
62 36 0.12
63 13 0.04
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATTTTTAA
Found at i:14280656 original size:178 final size:174
Alignment explanation
Indices: 14280292--14280688 Score: 566
Period size: 178 Copynumber: 2.2 Consensus size: 174
14280282 TCTTGTGTAG
*
14280292 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAA-TATTTTTTGGAAATTTATTTTTAAGGAAAAT
** * *
14280357 TGATACTTTCAACTTTTCCTTAAAAATCTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATAC
64 TGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAAATTTATTTTTAAGGAAAATTGATAC
*
14280422 TTTCAACTTTTCCTCAAAAATCCTTTTTTTTTGAAAATTTACTTTTAA
129 TTTCAACTTTTCCTCAAAAATCC--TCTTTTTGAAAATTTACTTTTAA
*
14280470 GAAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAAGGA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATATTTTTTGGAAATTTA----T-TTTTAAGGA
* *
14280535 AAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAATTTTGATTTTTAAGGGAAATT
60 AAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAAATTT-ATTTTTAAGGAAAATT
*
14280600 GATACTTTCAACTTTTCCTCAAAAA-CC-CTTTTTG-AAATTTATTTTTAA
124 GATACTTTCAACTTTTCCTCAAAAATCCTCTTTTTGAAAATTTACTTTTAA
*
14280648 GGAAAATTGATACTTTCAATTTTTCCCTAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTT
14280689 TTTGAATTTT
Statistics
Matches: 199, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
177 19 0.10
178 79 0.40
179 6 0.03
181 1 0.01
182 54 0.27
183 40 0.20
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.46
Consensus pattern (174 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATTG
ATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAAATTTATTTTTAAGGAAAATTGATACTT
TCAACTTTTCCTCAAAAATCCTCTTTTTGAAAATTTACTTTTAA
Found at i:14280729 original size:4 final size:4
Alignment explanation
Indices: 14280714--14280832 Score: 54
Period size: 4 Copynumber: 29.0 Consensus size: 4
14280704 TTTTTAAAGA
* *
14280714 AAAT AGAAT AAAT -AA- AAAT AAAT -AA- AAAT AAAA AAAT AAAGA AAAGT
1 AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA-T AAA-T
* *
14280761 AAAA AAAT AAA- AAAT AAAAT AAAT ATAA- AAAG AATATT AAAT AAACCT
1 AAAT AAAT AAAT AAAT -AAAT AAAT A-AAT AAAT AA-A-T AAAT AAA--T
*
14280809 -AAT CTAAT AAAT AAAT AAAT AAAT
1 AAAT -AAAT AAAT AAAT AAAT AAAT
14280833 TAAAAAAAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 32
0.69 0.06 0.24
Matches are distributed among these distances:
3 14 0.15
4 50 0.55
5 24 0.26
6 3 0.03
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:14280735 original size:10 final size:10
Alignment explanation
Indices: 14280720--14280790 Score: 67
Period size: 10 Copynumber: 7.2 Consensus size: 10
14280710 AAGAAAATAG
14280720 AATAAATAAA
1 AATAAATAAA
14280730 AATAAATAAA
1 AATAAATAAA
14280740 AAT-AA-AAA
1 AATAAATAAA
*
14280748 AATAAAGAAA
1 AATAAATAAA
* *
14280758 AGTAAAAAAA
1 AATAAATAAA
*
14280768 TAAAAAAT-AA
1 -AATAAATAAA
14280778 AATAAATATAA
1 AATAAATA-AA
14280789 AA
1 AA
14280791 AGAATATTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
8 6 0.12
9 10 0.20
10 26 0.52
11 8 0.16
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (10 bp):
AATAAATAAA
Found at i:14280735 original size:24 final size:24
Alignment explanation
Indices: 14280713--14280790 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
14280703 TTTTTTAAAG
*
14280713 AAAATAGAATAAATAAAAATAAATA
1 AAAATA-AAAAAATAAAAATAAATA
*
14280738 AAAATAAAAAAATAAAGAA-AAGTA
1 AAAATAAAAAAATAAA-AATAAATA
*
14280762 AAAAAATAAAAAAT-AAAATAAATA
1 AAAATA-AAAAAATAAAAATAAATA
14280786 TAAAA
1 -AAAA
14280791 AGAATATTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
23 2 0.04
24 24 0.53
25 19 0.42
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (24 bp):
AAAATAAAAAAATAAAAATAAATA
Found at i:14280748 original size:18 final size:18
Alignment explanation
Indices: 14280727--14280771 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
14280717 TAGAATAAAT
*
14280727 AAAAATAAATAAAAATAA
1 AAAAATAAAGAAAAATAA
*
14280745 AAAAATAAAGAAAAGTAA
1 AAAAATAAAGAAAAATAA
14280763 AAAAATAAA
1 AAAAATAAA
14280772 AAATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.13
Consensus pattern (18 bp):
AAAAATAAAGAAAAATAA
Found at i:14280755 original size:42 final size:45
Alignment explanation
Indices: 14280708--14280796 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 45
14280698 TTTATTTTTT
*
14280708 TAAAGAAAA-TAGAATAAAT-AAAAAT-AAATAAAAATAAAAA-AA
1 TAAAGAAAAGTA-AAAAAATAAAAAATAAAATAAAAATAAAAAGAA
*
14280750 TAAAGAAAAGTAAAAAAATAAAAAATAAAATAAATATAAAAAGAA
1 TAAAGAAAAGTAAAAAAATAAAAAATAAAATAAAAATAAAAAGAA
14280795 TA
1 TA
14280797 TTAAATAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
42 15 0.37
43 8 0.20
44 14 0.34
45 4 0.10
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (45 bp):
TAAAGAAAAGTAAAAAAATAAAAAATAAAATAAAAATAAAAAGAA
Found at i:14280788 original size:18 final size:17
Alignment explanation
Indices: 14280708--14280791 Score: 70
Period size: 16 Copynumber: 4.9 Consensus size: 17
14280698 TTTATTTTTT
* *
14280708 TAAAGAAAATAGAATAAA
1 TAAA-AAAATATAAAAAA
14280726 TAAAAATAA-AT-AAAAA
1 TAAAAA-AATATAAAAAA
14280742 TAAAAAAATA-AAGAAAA
1 TAAAAAAATATAA-AAAA
14280759 GT-AAAAAA-ATAAAAAA
1 -TAAAAAAATATAAAAAA
14280775 TAAAATAAATATAAAAA
1 TAAAA-AAATATAAAAA
14280792 GAATATTAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
15 3 0.05
16 20 0.36
17 18 0.33
18 14 0.25
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.17
Consensus pattern (17 bp):
TAAAAAAATATAAAAAA
Found at i:14281768 original size:12 final size:13
Alignment explanation
Indices: 14281753--14281865 Score: 56
Period size: 12 Copynumber: 8.3 Consensus size: 13
14281743 TTATAGGATA
14281753 AATAAA-AAAAAT
1 AATAAATAAAAAT
* *
14281765 AATAGATATATAATT
1 AATA-A-ATAAAAAT
14281780 AGATAAATAAAAAT
1 A-ATAAATAAAAAT
*
14281794 ACA-AAA-ATAAAT
1 A-ATAAATAAAAAT
14281806 AA-AATATAAAAAT
1 AATAA-ATAAAAAT
*
14281819 AAT-AATAATAAT
1 AATAAATAAAAAT
14281831 AATATAATAATAAAT
1 AATA-AATAA-AAAT
*
14281846 ATATAACTATATAAAT
1 A-ATAA--ATAAAAAT
14281862 AATA
1 AATA
14281866 TACATATAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 23
0.70 0.09 0.21
Matches are distributed among these distances:
11 3 0.04
12 21 0.27
13 12 0.15
14 14 0.18
15 14 0.18
16 11 0.14
17 3 0.04
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (13 bp):
AATAAATAAAAAT
Found at i:14281785 original size:32 final size:31
Alignment explanation
Indices: 14281684--14281792 Score: 121
Period size: 32 Copynumber: 3.4 Consensus size: 31
14281674 TAAAAATCAA
* *
14281684 ATAAATATAAAAAAATAATAGATAATTAGAACAG
1 ATAAATA-AAAAAAATAATAGAT-A-TATAATAG
* *
14281718 ATAAATCGAAAAAAA-AATAGATATATTATAGG
1 ATAAAT-AAAAAAAATAATAGATATATAATA-G
14281750 ATAAATAAAAAAAATAATAGATATATAATTAG
1 ATAAATAAAAAAAATAATAGATATATAA-TAG
14281782 ATAAATAAAAA
1 ATAAATAAAAA
14281793 TACAAAAATA
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
31 11 0.17
32 32 0.49
33 9 0.14
34 13 0.20
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (31 bp):
ATAAATAAAAAAAATAATAGATATATAATAG
Found at i:14281800 original size:37 final size:35
Alignment explanation
Indices: 14281750--14281863 Score: 97
Period size: 37 Copynumber: 3.1 Consensus size: 35
14281740 ATATTATAGG
* *
14281750 ATAAATAA-AAAAAATAATAGATATATAATTAGATAA
1 ATAAA-AATAAAAAATAATAAATATATAAATA-ATAA
*
14281786 ATAAAAATACAAAAATAAATAAAATATAAAAATAAT-A
1 ATAAAAATA-AAAAAT-AAT-AAATATATAAATAATAA
* * *
14281823 ATAATAATAATATAATAATAAATATATAACTATATAA
1 ATAAAAATAA-AAAATAATAAATATATAAATA-ATAA
14281860 ATAA
1 ATAA
14281864 TATACATATA
Statistics
Matches: 64, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
35 13 0.20
36 12 0.19
37 24 0.38
38 5 0.08
39 10 0.16
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (35 bp):
ATAAAAATAAAAAATAATAAATATATAAATAATAA
Found at i:14281824 original size:3 final size:3
Alignment explanation
Indices: 14281803--14281843 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
14281793 TACAAAAATA
*
14281803 AAT AA- AAT -AT AAA AAT AAT AAT AAT AAT AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14281844 ATATATAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 6 0.18
3 27 0.82
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:14281828 original size:17 final size:17
Alignment explanation
Indices: 14281785--14281867 Score: 62
Period size: 17 Copynumber: 4.7 Consensus size: 17
14281775 TAATTAGATA
* *
14281785 AATAAAAATACAAAAAT
1 AATAATAATATAAAAAT
14281802 AAATAA-AATATAAAAAT
1 -AATAATAATATAAAAAT
*
14281819 AATAATAATA-ATAATAT
1 AATAATAATATA-AAAAT
* *
14281836 AATAATAAATATATAACT
1 AATAAT-AATATAAAAAT
14281854 ATATAAATAATATA
1 A-AT-AATAATATA
14281868 CATATAAATC
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
16 6 0.11
17 24 0.44
18 12 0.22
19 9 0.17
20 3 0.06
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAATAATATAAAAAT
Done.