Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 77 of 131
Found at i:14281862 original size:23 final size:21
Alignment explanation
Indices: 14281754--14281865 Score: 96
Period size: 20 Copynumber: 5.5 Consensus size: 21
14281744 TATAGGATAA
14281754 ATAAA-AA-AAATAATAGATAT
1 ATAAATAATAAATAATA-ATAT
*
14281774 ATAATTAGATAAATAA-AA-AT
1 ATAAATA-ATAAATAATAATAT
*
14281794 ACAAA-AATAAATAA-AATAT
1 ATAAATAATAAATAATAATAT
*
14281813 AAAAATAAT-AATAATAATA-
1 ATAAATAATAAATAATAATAT
14281832 ATATAATAATAAATATATAACTAT
1 ATA-AATAATAAATA-ATAA-TAT
14281856 ATAAATAATA
1 ATAAATAATA
14281866 TACATATAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
18 10 0.13
19 14 0.18
20 22 0.29
21 6 0.08
22 6 0.08
23 15 0.20
24 3 0.04
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (21 bp):
ATAAATAATAAATAATAATAT
Found at i:14281864 original size:37 final size:38
Alignment explanation
Indices: 14281762--14281874 Score: 110
Period size: 37 Copynumber: 3.1 Consensus size: 38
14281752 AAATAAAAAA
* * * * *
14281762 AATAATAGATATATAATTAGATAAATAAAAATACA-AA
1 AATAATAAATATATAAATATATAAATAATAATACATAT
*
14281799 AATAAATAAA-ATATAAAAATA-ATAATAATAATA-ATAT
1 AAT-AATAAATATATAAATATATA-AATAATAATACATAT
*
14281836 AATAATAAATATATAACTATATAAATAAT-ATACATAT
1 AATAATAAATATATAAATATATAAATAATAATACATAT
14281873 AA
1 AA
14281875 ATCTATTCTA
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
36 11 0.18
37 45 0.73
38 6 0.10
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (38 bp):
AATAATAAATATATAAATATATAAATAATAATACATAT
Found at i:14281866 original size:54 final size:56
Alignment explanation
Indices: 14281750--14281867 Score: 126
Period size: 52 Copynumber: 2.2 Consensus size: 56
14281740 ATATTATAGG
14281750 ATAAATAA-A-AAAAATAATAGATATATAATTAGATAAATAAAAATACAAAAATAA
1 ATAAATAATATAAAAATAATAGATATATAATTAGATAAATAAAAATACAAAAATAA
* * * *
14281804 AT-AA-AATATAAAAATAATA-ATA-ATAA-TA-ATATAATAATAAATATATAACTAT
1 ATAAATAATATAAAAATAATAGATATATAATTAGATA-AATAA-AAATACAAAAATAA
14281856 ATAAATAATATA
1 ATAAATAATATA
14281868 CATATAAATC
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
50 3 0.06
51 7 0.13
52 18 0.33
53 8 0.15
54 18 0.33
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (56 bp):
ATAAATAATATAAAAATAATAGATATATAATTAGATAAATAAAAATACAAAAATAA
Found at i:14281872 original size:23 final size:22
Alignment explanation
Indices: 14281832--14281874 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
14281822 AATAATAATA
*
14281832 ATATAATAATAAATATATAACT
1 ATATAATAATAAACATATAACT
*
14281854 ATATAAATAATATACATATAA
1 ATAT-AATAATAAACATATAA
14281875 ATCTATTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (22 bp):
ATATAATAATAAACATATAACT
Found at i:14281873 original size:17 final size:16
Alignment explanation
Indices: 14281772--14281873 Score: 76
Period size: 14 Copynumber: 6.6 Consensus size: 16
14281762 AATAATAGAT
*
14281772 ATATAATTAGATAAATA
1 ATATAA-TATATAAATA
* *
14281789 A-A-AATACAAAAATA
1 ATATAATATATAAATA
*
14281803 A-ATAAAATATAAA-A
1 ATATAATATATAAATA
14281817 ATAATAATA-AT-AATA
1 AT-ATAATATATAAATA
14281832 ATATAATA-ATAAAT-
1 ATATAATATATAAATA
14281846 ATATAACTATATAAATA
1 ATATAA-TATATAAATA
14281863 ATATACATATA
1 ATATA-ATATA
14281874 AATCTATTCT
Statistics
Matches: 70, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
14 28 0.40
15 19 0.27
16 12 0.17
17 10 0.14
18 1 0.01
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (16 bp):
ATATAATATATAAATA
Found at i:14281940 original size:9 final size:10
Alignment explanation
Indices: 14281910--14281963 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
14281900 AAATACAGAT
14281910 ATACATATATTA
1 ATACATA-A-TA
14281922 ATACATAATA
1 ATACATAATA
14281932 ATA-ATAATA
1 ATACATAATA
* *
14281941 A-ATATAAAA
1 ATACATAATA
14281950 ATACATAA-A
1 ATACATAATA
14281959 ATACA
1 ATACA
14281964 AAAAAAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 1 0.03
9 19 0.50
10 10 0.26
11 1 0.03
12 7 0.18
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (10 bp):
ATACATAATA
Found at i:14281975 original size:28 final size:28
Alignment explanation
Indices: 14281921--14281975 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
14281911 TACATATATT
* * *
14281921 AATACATAATAATAATAATAAATATAAA
1 AATACATAATAATAAAAAAAAAAATAAA
14281949 AATACATAA-AATACAAAAAAAAAATAA
1 AATACATAATAATA-AAAAAAAAAATAA
14281976 TACAGGATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (28 bp):
AATACATAATAATAAAAAAAAAAATAAA
Found at i:14282159 original size:11 final size:11
Alignment explanation
Indices: 14282143--14282170 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
14282133 TTATTTTTTG
14282143 TTTTTTGTGTT
1 TTTTTTGTGTT
14282154 TTTTTTGTGTT
1 TTTTTTGTGTT
14282165 TTTTTT
1 TTTTTT
14282171 TACCAAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (11 bp):
TTTTTTGTGTT
Found at i:14282168 original size:20 final size:19
Alignment explanation
Indices: 14282131--14282167 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14282121 AGCTCAACAT
14282131 TGTTATTTTTTGTTTTTTG
1 TGTTATTTTTTGTTTTTTG
14282150 TGTT-TTTTTTGTGTTTTT
1 TGTTATTTTTTGT-TTTTT
14282168 TTTTACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.03, C:0.00, G:0.16, T:0.81
Consensus pattern (19 bp):
TGTTATTTTTTGTTTTTTG
Found at i:14282235 original size:41 final size:42
Alignment explanation
Indices: 14282178--14282266 Score: 135
Period size: 41 Copynumber: 2.1 Consensus size: 42
14282168 TTTTACCAAA
**
14282178 GCTCCTCTAAACAGAGGTTCCACGACTTT-GGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTAGGAAAATAAATT
* *
14282219 GCTCCTCTAAACAGAGGCACCACGACTTTAGGGAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTAGGAAAATAAATT
14282261 GCTCCT
1 GCTCCT
14282267 TGGAAAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 27 0.63
42 16 0.37
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTAGGAAAATAAATT
Found at i:14282300 original size:61 final size:60
Alignment explanation
Indices: 14282205--14282326 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 60
14282195 TTCCACGACT
*
14282205 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTAGGGAAGTAAATTGCTCC
1 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT-GGAAAGTAAATTGCTCC
14282266 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
1 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
14282326 T
1 T
14282327 CTAAACAGAG
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
60 17 0.28
61 43 0.72
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (60 bp):
TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
Found at i:14282415 original size:42 final size:42
Alignment explanation
Indices: 14282266--14282650 Score: 559
Period size: 42 Copynumber: 9.5 Consensus size: 42
14282256 AAATTGCTCC
14282266 TTGGAAAA-TAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
14282307 TTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
* *
14282348 TTTGAAAA-TAAATTGCTCCTCTAAACAGAGACACCACGACT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
* *
14282389 TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
14282431 TTGGAAAA-TAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
* *
14282472 TTGGAAAAGTAAATTG---CTC----C----GTACCATGACT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
*
14282503 TTGGAAAAGTAAATTGCTACTCTAAACAGAGGCACCACGACT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
* *
14282545 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCGCGACTT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC-T
*
14282588 TTGG-AAAGTAAATTGCTCCTCTAAATAGAGGCACCACGACT
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
14282629 TTGGAAAAGTAAATTGCTCCTC
1 TTGGAAAAGTAAATTGCTCCTC
14282651 GACAATCATG
Statistics
Matches: 311, Mismatches: 16, Indels: 33
0.86 0.04 0.09
Matches are distributed among these distances:
31 25 0.08
34 3 0.01
35 1 0.00
38 1 0.00
39 3 0.01
40 3 0.01
41 125 0.40
42 145 0.47
43 5 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (42 bp):
TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
Found at i:14282438 original size:83 final size:83
Alignment explanation
Indices: 14282266--14282650 Score: 587
Period size: 83 Copynumber: 4.8 Consensus size: 83
14282256 AAATTGCTCC
14282266 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTA
1 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTA
*
14282330 AACAGAGGCACCACGACT
66 AACAGAGGTACCACGACT
* * *
14282348 TTTGAAAATAAATTGCTCCTCTAAACAGAGACACCACGACTTTTGAAAAGTAAATTGCTCCTCTA
1 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTA
14282413 AACAGAGGTACCACGACT
66 AACAGAGGTACCACGACT
14282431 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTG---CTC--
1 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTA
*
14282491 --C----GTACCATGACT
66 AACAGAGGTACCACGACT
*
14282503 TTGGAAAAGTAAATTGCTACTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCT
1 TTGGAAAA-TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCT
*
14282568 AAACAGAGGTACCGCGACTT
65 AAACAGAGGTACCACGAC-T
* *
14282588 TTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTC
1 TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTC
14282651 GACAATCATG
Statistics
Matches: 275, Mismatches: 14, Indels: 26
0.87 0.04 0.08
Matches are distributed among these distances:
72 18 0.07
73 48 0.17
76 4 0.01
80 4 0.01
82 42 0.15
83 90 0.33
84 61 0.22
85 8 0.03
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (83 bp):
TTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTA
AACAGAGGTACCACGACT
Found at i:14282562 original size:156 final size:156
Alignment explanation
Indices: 14282339--14282648 Score: 532
Period size: 156 Copynumber: 2.0 Consensus size: 156
14282329 AAACAGAGGC
* * *
14282339 ACCACGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGACACCACGACTTTTGAAAAGTAAATT
1 ACCACGACTTTGGAAAATAAATTGCTACTCTAAACAGAGACACCACGACTTTGGAAAAGTAAATT
14282404 GCTCCTCTAAACAGAGGTACCACGAC-TTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
66 GCTCCTCTAAACAGAGGTACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
14282468 GACTTTGGAAAAGTAAATTGCTCCGT
131 GACTTTGGAAAAGTAAATTGCTCCGT
* *
14282494 ACCATGACTTTGGAAAAGTAAATTGCTACTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAAT
1 ACCACGACTTTGGAAAA-TAAATTGCTACTCTAAACAGAGACACCACGACTTTGGAAAAGTAAAT
* * *
14282559 TGCTCCTCTAAACAGAGGTACCGCGACTTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACCA
65 TGCTCCTCTAAACAGAGGTACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCA
14282624 CGACTTTGGAAAAGTAAATTGCTCC
130 CGACTTTGGAAAAGTAAATTGCTCC
14282649 TCGACAATCA
Statistics
Matches: 145, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
155 15 0.10
156 70 0.48
157 60 0.41
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (156 bp):
ACCACGACTTTGGAAAATAAATTGCTACTCTAAACAGAGACACCACGACTTTGGAAAAGTAAATT
GCTCCTCTAAACAGAGGTACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGGAAAAGTAAATTGCTCCGT
Found at i:14283885 original size:15 final size:15
Alignment explanation
Indices: 14283860--14283899 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
14283850 TTTTCATTTT
*
14283860 TTTCATTTTTTCTTC
1 TTTCTTTTTTTCTTC
*
14283875 TTTCTTTTTTTTTTC
1 TTTCTTTTTTTCTTC
14283890 TTT-TTTTTTT
1 TTTCTTTTTTT
14283900 TTTTTCATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTCTTTTTTTCTTC
Found at i:14283887 original size:35 final size:37
Alignment explanation
Indices: 14283848--14283929 Score: 107
Period size: 34 Copynumber: 2.3 Consensus size: 37
14283838 TTTTTTTTCA
*
14283848 TTTTTTCATTTTTTTCATTTTTTCTTC-T-TTCTTTT
1 TTTTTTCATTTTTTTCATTTTTTCATCATCTTCTTTT
**
14283883 TTTTTTC-TTTTTTTTTTTTTTTCATCATCTTCTTTT
1 TTTTTTCATTTTTTTCATTTTTTCATCATCTTCTTTT
14283919 TTTTTCTCATT
1 TTTTT-TCATT
14283930 CTTCACCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
34 16 0.40
35 8 0.20
36 12 0.30
37 2 0.05
38 2 0.05
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (37 bp):
TTTTTTCATTTTTTTCATTTTTTCATCATCTTCTTTT
Found at i:14283895 original size:8 final size:8
Alignment explanation
Indices: 14283839--14283905 Score: 71
Period size: 8 Copynumber: 8.0 Consensus size: 8
14283829 ATTTGAATCT
14283839 TTTTTTTC
1 TTTTTTTC
*
14283847 ATTTTTTC
1 TTTTTTTC
14283855 ATTTTTTTC
1 -TTTTTTTC
*
14283864 ATTTTTTC
1 TTTTTTTC
*
14283872 TTCTTTCTTT
1 TT-TTT-TTC
14283882 TTTTTTTC
1 TTTTTTTC
*
14283890 TTTTTTTT
1 TTTTTTTC
14283898 TTTTTTTC
1 TTTTTTTC
14283906 ATCATCTTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
8 31 0.65
9 13 0.27
10 4 0.08
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTC
Found at i:14283918 original size:19 final size:19
Alignment explanation
Indices: 14283876--14283933 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
14283866 TTTTTCTTCT
*
14283876 TTCTTTTTTTTT-TC-TTT
1 TTCTTTTTTTTTCTCATTC
*
14283893 TTTTTTTTTTTTCATCA-TC
1 TTCTTTTTTTTTC-TCATTC
14283912 TTCTTTTTTTTTCTCATTC
1 TTCTTTTTTTTTCTCATTC
14283931 TTC
1 TTC
14283934 ACCTATTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 11 0.32
18 3 0.09
19 20 0.59
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (19 bp):
TTCTTTTTTTTTCTCATTC
Found at i:14288004 original size:65 final size:59
Alignment explanation
Indices: 14287830--14288169 Score: 440
Period size: 59 Copynumber: 5.7 Consensus size: 59
14287820 TCTTGTGTAG
*
14287830 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTTG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAA
* * *
14287888 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATCCTTTTTCTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAA
* * *
14287947 GGAAAATTGATACTTTTAACTTTTCCTCAAAAATCTTTTTTTTTTTTTTGAAAATTTACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATC------ATTTTTTTGAAAATTTATTTTTAA
* * *
14288012 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAATTTTGATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTT-ATTTTTAA
* **
14288072 GGGAAATTGATACTTTCAACTTTTCCTCAAAAA-C-CCTTTTTG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAA
*
14288128 GGAAAACTGATACTTTCAACTTTTCCAT-AAAAAT-ATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCC-TCAAAAATCATTTTTTT
14288170 TGGAATTTTT
Statistics
Matches: 246, Mismatches: 25, Indels: 23
0.84 0.09 0.08
Matches are distributed among these distances:
56 37 0.15
57 11 0.04
58 45 0.18
59 61 0.25
60 38 0.15
65 54 0.22
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAA
Found at i:14288044 original size:124 final size:118
Alignment explanation
Indices: 14287830--14288168 Score: 436
Period size: 124 Copynumber: 2.8 Consensus size: 118
14287820 TCTTGTGTAG
* *
14287830 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTTGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAATTTACTTTTAAGGAAAAT
** *
14287895 TGATACTTTCAACTTTTCCTTAAAAATCCTTTTTCT-GAAAATTT-ATTTTTAA
66 TGATACTTTCAACTTTTCCCCAAAAATCATTTTT-TGGAAAATTTGATTTTTAA
* *
14287947 GGAAAATTGATACTTTTAACTTTTCCTCAAAAATCTTTTTTTTTTTTTTGAAAATTTACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATC------ATTTTTTTG-AAATTTACTTTTAA
*
14288012 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAATTTTGATTTTTAA
59 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAAATTTGATTTTTAA
* ** * *
14288072 GGGAAATTGATACTTTCAACTTTTCCTCAAAAA-C-CCTTTTTGAAATTTATTTTTAAGGAAAAC
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAATTTACTTTTAAGGAAAAT
**
14288135 TGATACTTTCAACTTTTCCATAAAAAT-ATTTTTT
66 TGATACTTTCAACTTTTCCCCAAAAATCATTTTTT
14288169 TTGGAATTTT
Statistics
Matches: 197, Mismatches: 16, Indels: 20
0.85 0.07 0.09
Matches are distributed among these distances:
115 7 0.04
116 44 0.22
117 39 0.20
123 9 0.05
124 59 0.30
125 39 0.20
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAATTTACTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAAATTTGATTTTTAA
Found at i:14288215 original size:8 final size:8
Alignment explanation
Indices: 14288202--14288274 Score: 94
Period size: 8 Copynumber: 8.9 Consensus size: 8
14288192 AAGAAAATAG
14288202 AATAAAAA
1 AATAAAAA
*
14288210 AATAAATA
1 AATAAAAA
*
14288218 AA-AATAA
1 AATAAAAA
14288225 AATAAAAA
1 AATAAAAA
14288233 AATAAAAAA
1 AAT-AAAAA
14288242 AATAAAGAA
1 AATAAA-AA
14288251 AAGTAAAAA
1 AA-TAAAAA
14288260 AATAAAAA
1 AATAAAAA
14288268 AATAAAA
1 AATAAAA
14288275 TAAAGATAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
7 5 0.09
8 32 0.56
9 16 0.28
10 4 0.07
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.14
Consensus pattern (8 bp):
AATAAAAA
Found at i:14288219 original size:26 final size:25
Alignment explanation
Indices: 14288190--14288291 Score: 100
Period size: 27 Copynumber: 3.9 Consensus size: 25
14288180 TATTTTTATT
*
14288190 TAAAGAAAATAGAATAAAAAAATAAA
1 TAAA-AAAATAAAATAAAAAAATAAA
14288216 T--AAAAATAAAATAAAAAAATAAA
1 TAAAAAAATAAAATAAAAAAATAAA
* *
14288239 AAAAATAAAGAAAAGTAAAAAAATAAA
1 TAAAA-AAATAAAA-TAAAAAAATAAA
*
14288266 AAAATAAAATAAAGATAAAAAGAATA
1 TAAA-AAAATAAA-ATAAAAA-AATA
14288292 TTAAATAAAC
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
23 20 0.31
24 1 0.02
25 2 0.03
26 8 0.12
27 28 0.43
28 6 0.09
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (25 bp):
TAAAAAAATAAAATAAAAAAATAAA
Found at i:14288226 original size:28 final size:27
Alignment explanation
Indices: 14288195--14288274 Score: 77
Period size: 26 Copynumber: 3.1 Consensus size: 27
14288185 TTATTTAAAG
14288195 AAAATAGAATAAAAAAATAAATAAAAAT
1 AAAA-AGAATAAAAAAATAAATAAAAAT
14288223 ---AA-AATAAAAAAATAAA-AAAAAT
1 AAAAAGAATAAAAAAATAAATAAAAAT
14288245 AAAGAA-AAGTAAAAAAAT-AA-AAAAAT
1 AAA-AAGAA-TAAAAAAATAAATAAAAAT
14288271 AAAA
1 AAAA
14288275 TAAAGATAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
22 6 0.13
23 14 0.30
24 1 0.02
25 2 0.04
26 15 0.32
27 9 0.19
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (27 bp):
AAAAAGAATAAAAAAATAAATAAAAAT
Found at i:14288238 original size:31 final size:31
Alignment explanation
Indices: 14288202--14288285 Score: 113
Period size: 27 Copynumber: 2.8 Consensus size: 31
14288192 AAGAAAATAG
*
14288202 AATAAAAAAATAAATAAAAATAAAATAAAAA
1 AATAAAAAAATAAATAAAGATAAAATAAAAA
*
14288233 AAT--AAAAA-AAATAAAGA-AAAGTAAAAA
1 AATAAAAAAATAAATAAAGATAAAATAAAAA
14288260 AATAAAAAAATAAAATAAAGATAAAA
1 AATAAAAAAAT-AAATAAAGATAAAA
14288286 AGAATATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
27 12 0.27
28 8 0.18
29 10 0.22
31 12 0.27
32 3 0.07
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (31 bp):
AATAAAAAAATAAATAAAGATAAAATAAAAA
Found at i:14289243 original size:31 final size:30
Alignment explanation
Indices: 14289208--14289304 Score: 101
Period size: 31 Copynumber: 3.2 Consensus size: 30
14289198 AAATAAAAAT
14289208 TAAAAAATAATAGATA-ATTAGAACAGATAAA
1 TAAAAAATAATAGATATATTA-AA-AGATAAA
* *
14289239 TAAAAAA-AATAGATATATTATAGGATAAA
1 TAAAAAATAATAGATATATTAAAAGATAAA
* *
14289268 TAAAAAAATAACAGATATA-TAATTAGATAAA
1 T-AAAAAATAATAGATATATTAA-AAGATAAA
14289299 TAAAAA
1 TAAAAA
14289305 TACAAAAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
29 7 0.12
30 22 0.39
31 27 0.48
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (30 bp):
TAAAAAATAATAGATATATTAAAAGATAAA
Found at i:14289305 original size:29 final size:28
Alignment explanation
Indices: 14289232--14289353 Score: 87
Period size: 31 Copynumber: 4.4 Consensus size: 28
14289222 TAATTAGAAC
* * *
14289232 AGATAAATAAAAAAAATAGATATATTAT
1 AGATAAATAAAAATAACAGATATATAAT
14289260 AGGATAAATAAAAAAATAACAGATATATAATT
1 A-GATAAAT--AAAAATAACAGATATATAA-T
* *
14289292 AGATAAATAAAAAT-ACAAAAATA-AAT
1 AGATAAATAAAAATAACAGATATATAAT
*
14289318 A-A-AATATAAAAATAATA-ATAATATAAT
1 AGATAA-ATAAAAATAACAGAT-ATATAAT
14289345 A-AT-AATAAA
1 AGATAAATAAA
14289354 TATATAACTA
Statistics
Matches: 78, Mismatches: 7, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
24 2 0.03
25 10 0.13
26 12 0.15
27 8 0.10
28 8 0.10
29 13 0.17
31 23 0.29
32 2 0.03
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (28 bp):
AGATAAATAAAAATAACAGATATATAAT
Found at i:14289323 original size:17 final size:16
Alignment explanation
Indices: 14289301--14289360 Score: 75
Period size: 17 Copynumber: 3.6 Consensus size: 16
14289291 TAGATAAATA
*
14289301 AAAATACAAAAATAAAT
1 AAAATATAAAAAT-AAT
14289318 AAAATATAAAAATAAT
1 AAAATATAAAAATAAT
*
14289334 AATAATATAATAATAAT
1 AA-AATATAAAAATAAT
14289351 AAATATATAA
1 AAA-ATATAA
14289361 CTATATAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.15
17 33 0.85
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATATAAAAATAAT
Found at i:14289345 original size:14 final size:13
Alignment explanation
Indices: 14289311--14289374 Score: 71
Period size: 14 Copynumber: 4.8 Consensus size: 13
14289301 AAAATACAAA
14289311 AATAAATAA-AAT
1 AATAAATAATAAT
14289323 -ATAAA-AATAAT
1 AATAAATAATAAT
14289334 AATAATATAATAAT
1 AATAA-ATAATAAT
14289348 AATAAATATATAACT
1 AATAAATA-ATAA-T
14289363 ATATAAATAATA
1 A-ATAAATAATA
14289375 TACATATAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
10 2 0.04
11 8 0.18
12 4 0.09
13 4 0.09
14 15 0.33
15 5 0.11
16 7 0.16
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (13 bp):
AATAAATAATAAT
Found at i:14289375 original size:17 final size:17
Alignment explanation
Indices: 14289334--14289385 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
14289324 TAAAAATAAT
14289334 AATAATATAA-TAATAATA
1 AATAATATAACT-AT-ATA
14289352 AAT-ATATAACTATATA
1 AATAATATAACTATATA
14289368 AATAATAT-AC-ATATA
1 AATAATATAACTATATA
14289383 AAT
1 AAT
14289386 CTATTCTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 8 0.25
16 8 0.25
17 12 0.38
18 4 0.12
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (17 bp):
AATAATATAACTATATA
Found at i:14289383 original size:15 final size:16
Alignment explanation
Indices: 14289337--14289385 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 16
14289327 AAATAATAAT
14289337 AATATAATAA-TA-ATA
1 AATAT-ATAACTATATA
14289352 AATATATAACTATATA
1 AATATATAACTATATA
14289368 AATA-ATATAC-ATATA
1 AATATATA-ACTATATA
14289383 AAT
1 AAT
14289386 CTATTCTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 4 0.13
15 18 0.58
16 9 0.29
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATATAACTATATA
Found at i:14289447 original size:9 final size:10
Alignment explanation
Indices: 14289417--14289470 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
14289407 AAATACAGAT
14289417 ATACATATATTA
1 ATACATA-A-TA
14289429 ATACATAATA
1 ATACATAATA
14289439 ATA-ATAATA
1 ATACATAATA
* *
14289448 A-ATATAAAA
1 ATACATAATA
14289457 ATACATAA-A
1 ATACATAATA
14289466 ATACA
1 ATACA
14289471 AAAGAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 1 0.03
9 19 0.50
10 10 0.26
11 1 0.03
12 7 0.18
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (10 bp):
ATACATAATA
Found at i:14290480 original size:26 final size:26
Alignment explanation
Indices: 14290451--14290503 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14290441 CCGGTCTGAT
* *
14290451 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14290477 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14290503 C
1 C
14290504 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14291372 original size:26 final size:26
Alignment explanation
Indices: 14291320--14291372 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14291310 CCGGTCTGAT
*
14291320 CTTAGACTGGCAAAGAACTCTGCATG
1 CTTAGACTGGCAAAGAACTCCGCATG
* * *
14291346 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAAAGAACTCCGCATG
14291372 C
1 C
14291373 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAAAGAACTCCGCATG
Found at i:14292239 original size:26 final size:26
Alignment explanation
Indices: 14292210--14292262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14292200 CCGGTCCGAT
*
14292210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14292236 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14292262 C
1 C
14292263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14292481 original size:890 final size:884
Alignment explanation
Indices: 14289738--14293030 Score: 4424
Period size: 890 Copynumber: 3.7 Consensus size: 884
14289728 CGATTCGAAT
* * *
14289738 TTAGACTGGGATTGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCTGGCAGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGC-GGCGGGC-GAC
* *
14289803 --ACTATGTC-GACCAGAGAGACGGGATGCGCAAGCCATGGAACGATAGGGTGGTAGGTGGGTTT
64 ATACT-TGTCAG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
14289865 AGGCACATCTTCATATTTCTGCATTCCAATGCAAGTTTTATGGCTTGTAAATTCATACAATGGTC
127 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * **
14289930 CCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAA
* * ** *
14289995 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGTGCCAAACTTGGTAGG
257 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
14290060 CATGATCATTGTATTTTT-TTTGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
322 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
14290124 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGTAGCAAACCT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
* *
14290189 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGTGATAGCGGGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
*
14290254 ATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
** * * * *
14290319 CACCGGACCCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCTGGCGATGGTGCCCTGACGAA
582 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC-GACGATGGTGCCCCGACGAA
*
14290384 GAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTG
646 GAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCTG
*
14290449 ATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAAC
711 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
14290514 CTATGAAACGAGCGTGCGTGCGCTTAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGT
776 C-ATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAAAGGGGCGGGATGCGCAAGCCG-GGATCGGT
* **
14290579 CGGGTCCCCCTTTACGTGCTGTCATTCTTGCTACTGCAACCCTTAATCCT-GTCTGATC
839 CGGGTCCCCCTCTAC--G-TG-----C-TGC-A--GCAACCCTCGAT-CTGGTCTGATC
*
14290637 TTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GTG-GGCGGGC-AC-T
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGCGGGCGACAT
** * *
14290697 AC--ACCAGCCAGAGAGACGGAATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 ACTTGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*** *
14290760 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* ** * * * *
14290825 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTTACGATTTTCGAACCTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTT
* * * * *
14290890 TTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAAATTGGTAGACGTG
261 TTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
* *
14290955 ATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAGATT
326 ATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
14291020 TTGTGACTATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGCCTATTTGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
14291085 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAA
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGGGGCCAA
* * * *
14291149 TATAAGGGCCAAGTACCAGCACCAATCACACATCATATGCGCACA-CCCCTCGG-CCCCCCGATC
518 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
*
14291212 GTCAGAACCCCAA-----T--GTC--G---T-C--CG--G-T----GATGGTGCCCCGACGAAGA
583 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCGACGATGGTGCCCCGACGAAGA
* * *
14291255 AAAATGCAGCACTAGCACATGCTCGAGCCTAGCATGTGCTACCGTAACTCTCGGTCCGGTCTGAT
648 AAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCTGAT
* * *
14291320 CTTAGACTGGCAAAGAACTCTGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
713 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CC
* * * * * * *
14291385 ACGAAGCGAGCGTGCGGGCGCTCAGCCGACCATAGGGGCGGGATGCGCAAGTCGGAGATCGGCCG
777 ATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAAAGGGGCGGGATGCGCAAGCCGG-GATCGGTCG
* * * *
14291450 GGTCCACCTC-AGCGTGCTGCGGCAACCCTCGATCCGATCTGATC
841 GGTCCCCCTCTA-CGTGCTGCAGCAACCCTCGATCTGGTCTGATC
** * * *
14291494 TTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGTGCGGGCGAGCGTCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGC-GGCGGGCG--A
* * *
14291559 CGGTACTGCGTCAGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
63 C-ATACT-TGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
14291624 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCTTACAATGGT
126 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
14291689 CCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGATTCATTTTCTATTTTTCATGATTTTTAA
191 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAA
** * *
14291754 AACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAAAAAGCGTTTTGGCCCCAAACTTGGTAG
256 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAG
*
14291819 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACAT-GAAGTGTACAA
321 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAA
* * * *
14291882 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTCATGGCTACTGGTAGCAAAC
385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
* * *
14291947 CTGTAAAATCCCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* *
14292012 CAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCG
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* *
14292076 ATCGTCGGAACCCCAATGCAGTCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
580 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-CGACGATGGTGCCCCGACG
* * * * *
14292141 AAGAAAAATG-TGACACCAGCTCATGCCCGAGCCCAACATGTGCTACCGTAACCCTCAGTCCGGT
644 AAGAAAAATGCAG-CACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGT
* * *
14292205 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
708 CTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
14292270 AACTCATGAAACGAGCATGCGGGTGGTCAGCTGGCCAAAGGGGCGGGATGTGCAAGCCAGGGATC
773 AAC-CATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAAAGGGGCGGGATGCGCAAGCC-GGGATC
* *
14292335 GATCGGGTCCCCCTCTACGTGCTGCAGCAACCCTCGGTCTGGTCTGATC
836 GGTCGGGTCCCCCTCTACGTGCTGCAGCAACCCTCGATCTGGTCTGATC
* * *
14292384 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACGAGCGAGCGAGCGGGCGGAC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCG-GCGGGC-GAC
* * *
14292449 AGGGT-CTTTGTCGGCCAAAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGT
64 A---TAC-TTGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
14292513 TTGGGCACATCCTCATATATCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
125 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
14292578 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCA
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCA
* *
14292643 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
255 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
* **
14292708 GACATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCT-ACTACTCGAAGTGTACAA
320 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * *
14292772 GATTTTGTGACAATTTGAAAAAAGTATCCCTATTTCAGACACTTTAATGGTTACTGGCAGCAAAC
385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
* ** * *
14292837 CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAAATTTGATGAGCGATAGGGGGT
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * * *
14292902 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATTTGTGCACACCCCCCTCGACCCCCCC
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCC
*
14292967 GATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGA
579 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC-GACGATGGTGCCCCGA
14293031 GCCCAGCATG
Statistics
Matches: 2112, Mismatches: 219, Indels: 133
0.86 0.09 0.05
Matches are distributed among these distances:
856 1 0.00
857 61 0.03
859 3 0.00
860 3 0.00
861 7 0.00
864 1 0.00
866 203 0.10
867 39 0.02
868 2 0.00
869 437 0.21
870 2 0.00
872 1 0.00
874 3 0.00
875 1 0.00
876 1 0.00
877 2 0.00
879 2 0.00
880 2 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 4 0.00
887 1 0.00
889 5 0.00
890 704 0.33
891 260 0.12
892 87 0.04
893 14 0.01
894 208 0.10
895 6 0.00
897 3 0.00
899 45 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (884 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGCGGGCGACAT
ACTTGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTT
TTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCGACGATGGTGCCCCGACGAAGAAAA
ATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCTGATCTT
AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCATGA
AACGAGCGTGCGGGCGCTCAGCTGGCCAAAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGGTCC
CCCTCTACGTGCTGCAGCAACCCTCGATCTGGTCTGATC
Found at i:14294570 original size:26 final size:26
Alignment explanation
Indices: 14294534--14294584 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14294524 TGGTCTAATC
*
14294534 TTAGATTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
14294560 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14294585 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:14296336 original size:26 final size:26
Alignment explanation
Indices: 14296307--14296356 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14296297 CCGGTCTGAT
14296307 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14296333 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
14296357 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14296554 original size:12 final size:12
Alignment explanation
Indices: 14296537--14296562 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14296527 ACCGACGAAA
14296537 CGAGCGGGCGGG
1 CGAGCGGGCGGG
14296549 CGAGCGGGCGGG
1 CGAGCGGGCGGG
14296561 CG
1 CG
14296563 GGCACTACGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.65, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:14297253 original size:26 final size:26
Alignment explanation
Indices: 14297213--14297265 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14297203 CTGGTCTGAT
*
14297213 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14297239 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14297265 C
1 C
14297266 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14297730 original size:893 final size:895
Alignment explanation
Indices: 14295436--14298122 Score: 3599
Period size: 893 Copynumber: 3.0 Consensus size: 895
14295426 CTGGTCTGAT
* * *
14295436 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
*** * ** * ** * * *
14295501 CGGCCAGAGGGGAAAGATGCTCAAGCTAGCGATCGGTCGGGTCCTTCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCT-TCTGCGTGCTGCCGATCC
* * *
14295566 TGCTGTCACAACCCTCAGAT-TGGTCAAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCGCAACCCTCAG-TCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14295630 ACTGACGAA--A-CAAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAACCA
194 ACCGACGAATGAGCAAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCG
* *
14295692 TGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* *
14295757 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAACACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
14295822 CATTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
389 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAA
* * * * * *
14295887 AGCAGTTTTGGCCCCAAACTTGGTACACATGATCCTTATAGTTTTGTTGGCATGCAAAAAAAAAA
454 AGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAA
*
14295952 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTAAGA
518 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
*
14296017 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
14296082 TGGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCACTCATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
14296147 GTGCGCACACCCCCCCAGCCCCCCTGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGC
713 GTGCACACA-CCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * ** * *
14296212 AATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACAAGCCC-ATGCCCAGCA
776 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA-GCCCAGTA
*
14296276 TGTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
840 TGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATG
* * * *
14296333 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCAATGAAACGAGTGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
* * * * *
14296398 CAGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGTCCGGGTCCCCCTT-TGCATGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGT--CCCTTCTGCGTGCTGCCGATC
* * * * *
14296462 CTGCTACCGTAACCCTC-GATCTGATCAGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCT
129 CTGCTGCCGCAACCCTCAG-TCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
14296526 AACCGACGAAACGAGCGGGCGGGCGAGCGGGCGGGCGGGCACTACG-CCAGCCAGAGAGACGGGA
193 AACCGACG-AATGA--------GCAAGCGGGCGGGCGGGCACTACGTCGA-CCAGAGAGACGGGA
* * * *
14296590 TGAGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCGTACC
248 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
14296655 GAA-GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
313 -AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
** * * * *
14296719 GGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGCTCGAGATTTTTTAA
377 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAA
* * * ** *
14296784 AATTTTTTCGAAATGATTTTTGACCCCAAACTTACTAGACATGGTCCTTGTATTTTTGTTGGCAT
442 AATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
* *
14296849 GCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTC
507 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
14296914 CCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGG
572 CCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
14296979 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCA
637 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
14297044 TCGCACATCATGTGCACCCACCCCCCGGCCCCCCGATCGCTGGAACCCCAATACCGCCGGTCAGG
702 TCGCACATCATGTGCACACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * * * *
14297109 TTCTCCGACGATGCTCCGGCGATGGTTCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGA
767 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* ** *
14297174 GCCCAGTATGTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGTAATGAACTCCGTATG
832 GCCCAGTATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG-AATGAACTCCGTATG
* * * * *
14297239 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAATGAGGGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
* * * * * * *
14297304 CGGCCATAGAGACGGGGTGCACAAGCCGAGGATCGACCGGGTCCCTTCTGCGTGCTGTCGATCCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCTTCTGCGTGCTGCCGATCCT
* *
14297369 GCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGCCGCAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
14297434 TGACG-A-GA-CAAGCGGGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTG
196 CGACGAATGAGCAAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTG
*
14297496 GATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
261 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
*
14297561 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCA
326 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
** * * *
14297626 TTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCCAGATTTTTTAAATTTTTTTTGAAAG
391 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAG
* * *
14297691 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGCAC-AAAAAATTC
456 GATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
14297755 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA-ACA
521 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AAGACA
* * * * *
14297819 CTTTAACGGCTATTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTT
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
14297884 GAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGT
650 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
14297949 GCGTAAAC-CCCCCCGGCCACCCCGATCACCGGAACCCCAATACCGCCGGTCAGG---T------
715 GC--ACACACCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* * * *
14298004 -T-CTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGATCCCAGCATG
777 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATG
* * * * *
14298067 TGCTATCGTAACTCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
842 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATG
14298122 C
1 C
14298123 CTAAGCCAAC
Statistics
Matches: 1582, Mismatches: 180, Indels: 70
0.86 0.10 0.04
Matches are distributed among these distances:
883 100 0.06
884 3 0.00
891 1 0.00
892 193 0.12
893 281 0.18
894 37 0.02
896 3 0.00
897 162 0.10
898 3 0.00
899 3 0.00
900 1 0.00
902 2 0.00
903 1 0.00
904 5 0.00
905 76 0.05
906 226 0.14
907 14 0.01
908 201 0.13
909 268 0.17
910 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCTTCTGCGTGCTGCCGATCCT
GCTGCCGCAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAATGAGCAAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAG
GATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CACACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
TCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCT
ACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATG
Found at i:14299055 original size:716 final size:713
Alignment explanation
Indices: 14297389--14300279 Score: 3678
Period size: 716 Copynumber: 4.0 Consensus size: 713
14297379 CCCTCAGTCT
* **
14297389 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG--A-GA-CAAGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
*
14297450 CGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGT
66 CGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGT
* *
14297515 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACA
* *
14297580 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCATTTTCTATTTTTCACGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * *** * * * *
14297645 TTTGAAACCTTTTACGGTTCCAGATTTTTTAAATTTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
261 TTCAAAACTTTTTGCGGTTTGGGATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
14297710 GGTAGACGTGATCTTTGTATTTTTGTTGGCAT-GCAC-AAAAAATTCAGCTAAAAACTCGAAGTG
326 GGTAGACGTGATCCTTGTATTTTTGTTGGC-TGGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
14297773 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTATTGGCAA
390 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14297838 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTT-GAGGTTTGATGAGGGATA
455 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TTCGAGGTTTGATGAGGGATA
* * *
14297902 GGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAAACCCCCCCGGCC
519 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * *
14297967 ACCCC-GATCACCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGA---T-------GGTGCC
584 -CCCCTGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGACGGTGCC
** * * * * * *
14298021 CCGACGAAGAAAAATATGGCACCAGCACATGCTCGATCCCAGCATGTGCTATCGTAACTCTCGGT
648 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTC-GA
14298086 CC
712 CC
* * *
14298088 GGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCAAGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC---CG--ACGA--AA-CGAG
* * * *
14298153 CGGGCGGGCGGGCGGGCAC-ACGTCGACTAGGGAGATGGGATGCGCAAGCCGTGGATCGAT-AGA
58 CGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAG-
* * * *
14298216 GTGGCAGGTGGGTTCAGGCACATCTCCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
122 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGAAA
*
14298281 ATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
187 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
14298346 TTGATGATTTTCAAAACTTTCTGCGGTATGGGATTTTTAAAAAATTTTTCGGAAGGAGTTTTGGC
252 TTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGC
* *
14298411 CCCAAACTTGGTAGACGTGATCCCTGTAGTTTTT-TTGG-TGGCACAAAAAAAAATCAGCTAAAA
317 CCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCTGGCAC-AAAAAAATTCAGCTAAAA
* **
14298474 ACTCGAAGTCTGTAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
380 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
14298539 CTACTGGCCGCAAACGTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTCGAGGTCTC
445 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TTTTCGAGGTTTG
*
14298604 ATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
509 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
14298669 TCCCCCCTGGCCCCCCTGAACGCCAGAACACTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
574 -CCCCCC-GGCCCCCCTGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * *
14298734 GACGACGGTG-CTCGACGATGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTG-C
637 G-CGACGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC
*
14298797 TGCAACCATTC-ACC
701 -GCAACC-CTCGACC
* ** *
14298811 GGTCTGATCTTAGGCTGGGAATGAACTCTTTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * * * *
14298876 CAGGCGGGCATTACGCCGGCCAGATAGACAGGATGTGCAAGTCGTGGATCGATAAGGTGGTAGGT
66 CGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGT
*
14298941 GGGTTTAGGCACATCTTCATATATCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACA
* **
14299006 ATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAATATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * *
14299071 TTCGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTC-CAAAGAGTTCTT-ACCCCAAAC
261 TTCAAAACTTTTTGCGGTTTGGGA-TTTTTAAAAATTTTTTCGGAAGGAGTT-TTGGCCCCAAAC
* * *
14299134 TTGGTAGACGTTATCCTTTTATTTTTGTTGGC-GTGCACAAAAAAATTCAGCAAAAAACTCGAAG
324 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCTG-GCACAAAAAAATTCAGCTAAAAACTCGAAG
** * *
14299198 TGTACAAGATTTTGTGATGATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAGC
388 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
14299263 AGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
453 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGAT
** *
14299328 AGGGGGCCAATATAAGGGTGAAGTACCAGCACCAATCGCACATCACT-TGCGCACACCCCACCCC
518 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-TGTGCGCACA--CC-CCCC
* * * * ** * *** * **
14299392 CGGCCCCCTTGATCGTCGGAACCCCATTGCCATCGGTCAGGTTCTACGGTAATGCTCCGGTGTTG
579 CGGCCCCCCTGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGACG
* *
14299457 GTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGT-GCAACC
643 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GTCGCAACC
* *
14299521 CTCAGTCT
707 CTC-GACC
* * * * * *
14299529 AGTCCGATGTTAGTCTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGTGGA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCG-GG-
* * ** * * *
14299594 CGGGCGGGCGGGCACTACGCC-AGCCAGATAAACTCGAAGCGCAAGCCGTGGATTGATAGGGTGG
62 CGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGG
** *
14299658 TAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCTAATGCCATTTTTATGGCTT-ATAAATT
126 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGA-AAATT
*
14299722 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTA-TTTTC
190 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
14299786 ACGATTGTT-GAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTTGCCC
255 ACGATT-TTCAAAACTTTTTGCGGTTTGGGATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * *
14299850 CAAACTTGGTAGACATGATCCTTGTA-TTTTGTAGGCTTGCACAAAAAAATTCAGCTAAAAACTC
319 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTGGCACAAAAAAATTCAGCTAAAAACTC
*
14299914 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACA-GGCTA
384 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA-ATGGCTA
* * *
14299978 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGCGTTATCGAGGTTTGATGA
448 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGA
*
14300043 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCC
513 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
14300108 CCGGCCCCCCTG-TCGTCAGAACCCCAATGCCGCCGGTTAGGTTCTTCGATGATACTTTCGCGAT
578 CCGGCCCCCCTGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC-TCCGCGAC
*
14300172 GGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
642 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
*
14300237 CTCGGTCC
707 CTC-GACC
*
14300245 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14300280 TTAGACTGGG
Statistics
Matches: 1896, Mismatches: 230, Indels: 115
0.85 0.10 0.05
Matches are distributed among these distances:
699 43 0.02
702 1 0.00
704 3 0.00
708 2 0.00
709 6 0.00
710 240 0.13
711 145 0.08
712 69 0.04
713 10 0.01
714 40 0.02
715 94 0.05
716 529 0.28
717 99 0.05
718 57 0.03
719 2 0.00
720 226 0.12
721 65 0.03
722 169 0.09
723 42 0.02
724 48 0.03
725 6 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (713 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
CGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTCAAAACTTTTTGCGGTTTGGGATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCTGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
CCTGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGACGGTGCCCCG
ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGACC
Found at i:14300289 original size:26 final size:26
Alignment explanation
Indices: 14300253--14300304 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14300243 CCAGTCTGAT
14300253 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14300279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14300305 GCTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14302287 original size:897 final size:895
Alignment explanation
Indices: 14300529--14303903 Score: 4054
Period size: 897 Copynumber: 3.8 Consensus size: 895
14300519 TACCTAGTAT
* * * *
14300529 GCCGGCTAGAGAGACGGGATGCACAAGCCATGGATCGATAAGGTGGTAGGTGGGTTCAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
14300594 CTTCATATTTCTACATGCCAATTCCCTTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGC
66 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
14300659 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTTTAAAC-TTTT
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAAACTTTTT
* * * * *
14300723 GCGGGTTCGAGATTTTTTTTAAAATTTTTTCGAAAGGACTTTTGGCCCCAAACTTGGAAGACGGG
196 AC-GGTTCGAGATTTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
14300788 ATCCTTGTAGTTTTTTTTGGCTGTGCACAAAAAATTCATGCTAAAAACTCGAAGTGTACAAAGAT
260 ATCCTTGTA-TTTTTTTTGGC-ATGCAAAAAAAAATCAGGCTAAAAACTCGAAGTGTAC-AAGAT
*
14300853 TTTGTGGGACCATTTTGAAAAAAGTGTCCCCATTTTCAGACACTTTTAATGGCTACTGGCCAGCA
322 TTTGT--GACCA-TTTGAAAAAAGTGTCCCCA-TTTCAGACAC-TTTAATGGCTACTGG-CAACA
* * * **
14300918 AACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTCAAAATTTGATGAGGGATAGGG
381 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-GAGGTTTGATGAGGGATAGGG
* * **
14300983 GGCC-A-AT----------TACCAGCACTCATCGCACATCATTTATGCACACCCCCCTCGGCCCC
445 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCC
* * * * ** *
14301036 CCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCC
508 CCCGATCGCCGAAACCCTAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * * *
14301101 -AGCGATGAAAAATACGGCACCAGCACATGGCCGAGCCTAGCATGTGCTACCGCAACCCTTGGT-
573 GA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * * * *
14301164 CTAGTCCGATCTTTGACTGGGAATGAACTCCGCATGTTTAAACTGGGAATGAACTCCGTATGCCT
637 CGA-TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
** * * * *
14301229 AAGTCAACAAACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAAGGACGAGATGCGTAAGCCGA
701 AAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCCAG-AGGGCGGGATGCGTAAGCCGA
** * * * *
14301294 GGATCGGCCGGGTCCCCCTCTGCATGCTGCAAATCCTGCTGCCACAACCCACGGTCTGGTCCGTT
765 GGATCGAACGGGTCCCCCTCTGCGTGCTGC-AATCCTGCTGCCACAACCCTCAGTCTGGTCCGAT
* * * *
14301359 CTTAGAATGGTAATGAAC-TCTGTATGCCTAAGCCAATCGATGAAACGAGCGGGTGGGCGGGCAC
829 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCAC
14301423 TAC
893 TAC
* *
14301426 GCCGGCCAGGGAGACGGGATGCGCAAGCCAAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
14301491 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGC
66 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
14301556 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTT
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAAACTTTTT
* *
14301620 ACGGTTC-AGGA-TTTTTTT-AAATTTTTTCGGATGGAGTTTTGTCCCCAAACTTGGTAGACGTG
196 ACGGTTCGA-GATTTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
14301682 ATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATCA-GCTAAAAACTCGAAGTGTACAAGATTT
260 ATCCTTGTATTTTTTTTGGCATGC-AAAAAAAAATCAGGCTAAAAACTCGAAGTGTACAAGATTT
* *
14301746 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCCAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTA
* **
14301811 AAATCTCAAATACTCTTTAAGGGATTGTGAGTTCCTGAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTGAGGTTTGATGAGGGATAGGGGGCCAATA
** * *
14301876 TAAGGGCCAAGTACCAGCACCCATCTTACATCATGTGCGCACACCCCCCTCCGACCCCCCGATCG
453 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCG
* * * * *
14301941 TCGGAACCCTAATGCTATCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGA
516 CCGAAACCCTAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * * **
14302006 AAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCAAAT
581 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGAT
* * * * *
14302071 CTTAGACTTGGAATGAACTTCATATGCATAGACTGGGAATGAACTCCGTGTGCCAAAGTCAACCC
646 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
14302136 ACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGTAAGCCGGGGATCGATCGG
711 ACAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGCGGGATGCGTAAGCCGAGGATCGAACGG
* * * ** *
14302201 GTCCCCCTCTGCGTGCTGCCATTCCTGTTGTCGTAACCCTCAGCCTGGTCTC-ATCTTAGACTGG
776 GTCCCCCTCTGCGTGCTG-CAATCCTGCTGCCACAACCCTCAGTCTGGTC-CGATCTTAGACTGG
14302265 GAATGAACTTCGTATGGCCTAAGCCAACCGACGAAACAAGAAGGCGGGGTAGGCGGGATCCGGTG
839 GAATGAACTTCGTAT-GCCTAAGCCAACCGACGAAAC--G-A-GC-GGGT----GGG---C---G
14302330 GGCCACTAC
888 GG-CACTAC
* *
14302339 GTCGGCCAGAGAGACGGGTATGCGCAAGCCGTGGATCGATAGGGGTGGTAGGTGGGTTTAGGCAC
1 GCCGGCCAGAGAGACGGG-ATGCGCAAGCCATGGATCGATA-GGGTGGTAGGTGGGTTTAGGCAC
* * * *
14302404 ATCTTCATATTTCTGCGTGGGCAATGCCATTTGTATGGCTTGTAAATTCAGGACCAATGGTCCCT
64 ATCTTCATATTTCTACGT-GCCAATGCCATTTTTATGGCTTGTAAATTCA-TA-CAATGGTCCC-
* *
14302469 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCCACGATTTTTCGAA
125 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-CACGATTTTTCAAA
* * * *
14302534 ACTTTTTATGGTTCGAGATTTTTTTTTAAAAATGTTTCGGCAGGAG-TTTGGCCCCAAACTTGGT
189 ACTTTTTACGGTTCGAGA-TTTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * ** * * *
14302598 A-ATGTGATCC-TGTA-TTTTTTGGGAGATGGCCCAAGAAATTCAGGCAAAAAAACTCGCAAGTG
253 AGACGTGATCCTTGTATTTTTTTTGG-CAT-GCAAAAAAAAATCAGGC-TAAAAACTCG-AAGTG
*
14302660 TACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
314 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
*
14302725 CAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
379 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TGAGGTTTGATGAGGGATAG
* * *
14302790 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACAAGTGCGCACACCCCCCAGCCCC
443 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * ** **
14302855 CCCGATCGCTGAAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCTTC
508 CCCGATCGCCGAAACCCTAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * * * *
14302920 GATGAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCT
573 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
*
14302985 GATCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCTTA
638 GATCTGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
14303049 AGTCAACCCATAAAACGAGCGTGC-GGCAGCTCAGTCGGGCAGAGGGGTGGGATGCGTAAGTCGA
702 AGTCAACCCACAAAACGAGCGTGCGGGC-GCTCAGTCGGCCAGA-GGGCGGGATGCGTAAGCCGA
* * * * * * * *
14303113 GGAT-TAACTGGGTCCCCTTCTGGGTACTGTCGATCCTGCTACCACAACCCTCAATCTAGTCCGA
765 GGATCGAAC-GGGTCCCCCTCTGCGTGCTG-CAATCCTGCTGCCACAACCCTCAGTCTGGTCCGA
* * * * * ** *
14303177 TCATAGACTGGGAACGAACTCCATATGCTTAAGCCAACCGACGAAACGAGCGGACGGGCGAGCAC
828 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCAC
14303242 TAC
893 TAC
* * *
14303245 GCCGGTCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
** *
14303310 CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGC
66 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
14303375 CTTCACGTGAAGTTTCTTGGTAAGACGACTCGTTTTCTATTTTTCACGA-TTTT-AGAAACTTTT
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCA-AAACTTTT
* ** * * * *
14303438 TACTGTTC-AGGA--TTTTGCAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTCGTAAACGT
195 TACGGTTCGA-GATTTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
14303500 GATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCA-GCTAAAAACTAGAAGTGTATAAGATT
259 GATCCTTGTATTTTTTTTGGCATGCA-AAAAAAAATCAGGCTAAAAACTCGAAGTGTACAAGATT
* * * *
14303564 TTGTGACCATTTAAAAAAAATGTCCCCATTTCAAACACTTTAGTGGCTACTGGCAACAAACCTGT
323 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
* * *
14303629 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAGGATTTGATGAGGGATAAGGGGCCAGT
388 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGAGG-TTTGATGAGGGATAGGGGGCCAAT
*
14303694 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCGGCCCCCCCGATCGC
452 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
* *
14303759 CGAAACCCGAATGCCGTCGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGACGAAGAA
517 CGAAACCCTAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * * * *
14303813 AAATACGACACCTGCACATGCTCAAGCCCAGCATGTGCTGCAGCAACCCTCGATCCGATCTGATC
582 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATC
14303878 TTAGACTGGGAATGAAC-TCTGTATGC
647 TTAGACTGGGAATGAACTTC-GTATGC
14303904 CTAAGCCAAC
Statistics
Matches: 2151, Mismatches: 258, Indels: 151
0.84 0.10 0.06
Matches are distributed among these distances:
884 99 0.05
885 62 0.03
886 18 0.01
887 12 0.01
888 19 0.01
889 5 0.00
891 10 0.00
892 26 0.01
893 21 0.01
894 52 0.02
895 243 0.11
896 128 0.06
897 440 0.20
898 35 0.02
899 13 0.01
900 48 0.02
901 12 0.01
902 5 0.00
903 28 0.01
904 40 0.02
905 22 0.01
906 24 0.01
907 2 0.00
909 1 0.00
910 1 0.00
912 3 0.00
913 25 0.01
914 20 0.01
915 39 0.02
916 29 0.01
917 3 0.00
918 11 0.01
919 50 0.02
920 14 0.01
921 41 0.02
922 239 0.11
923 122 0.06
924 189 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAAACTTTTT
ACGGTTCGAGATTTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTTTTGGCATGCAAAAAAAAATCAGGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAA
ACCCTAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAG
ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
ACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGCGGGATGCGTAAGCCGAGGATCGAACGGGTCCC
CCTCTGCGTGCTGCAATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAA
CTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCACTAC
Found at i:14303022 original size:26 final size:26
Alignment explanation
Indices: 14302993--14303048 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14302983 CTGATCTGAT
*
14302993 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14303019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14303045 CTTA
1 CTTA
14303049 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14303478 original size:922 final size:884
Alignment explanation
Indices: 14299838--14303903 Score: 3380
Period size: 897 Copynumber: 4.5 Consensus size: 884
14299828 TTTTCAGAAG
* * * * * * *
14299838 GATTTTTTGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTGTAGGCTTGCACAAAAAAATTC
1 GATTTTTGGCCCCAAACTTCGTAAACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAAATC
* *
14299902 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
66 AGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
14299967 TTTACA-GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGCGTTATC
131 TTTA-ATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-
*
14300031 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
194 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * * *
14300096 GCGCACACCCCCCCGGCCCCCCTG-TCG-TCAGAACCCCAATGCCGCCGGTTAGGTTCTTCGATG
259 GCGCACA-CCCCCCAGCCCCCCCGATCGCTGA-AACCCTAATGCCGTCGGTCAGGTTCTCCGACG
* * * * *
14300159 ATACTTTCGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
322 ATGC-TCCG-GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATG
* *
14300224 TGCTGTC-GCAACCCTCGGTCC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
385 TGCTG-CAGCAACCCTC-GTCCGA-TCTGATCTTAGACTGGGAATGAACTCTGTATGCATAGACT
* * * * * * *
14300287 GGGAATGAACTCCGTATGGCTAAGTCAACCCACAAAACAAGCGTACGGGCACTCAGCCGACTAGA
447 GGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** * * * *** * * * * *
14300352 GGGGCGGGATTTGCAAGCTGGGGATCGGCCGCGTCCCCCTCTACATGCTGTCGA-TCCTGCTACC
512 -GGGCGGGATGCGTAAGCCGAGGATCAATCGGGTCCCCCTCTGCGTACTG-CCATTCCTGCTACC
* * *** ** * * * *
14300416 GCAACCATCGGTCGGGTC-CAATCTTAGACTAGGAATGAACTCCATAT-ACCTAAGCCAACCGAC
575 ACAACCCTCAACCTAGTCTC-ATCATAGACTGGGAACGAACTCCATATGGCCTAAGCCAACCGAC
* ** *** ** * * * * *
14300479 GAAACGAGCGGTATTAGGTGGCCCGTCTCTCTGCTCCATATACCTAGTATGCCGGCTAGAGAGAC
639 GAAAC-A---G-A--AGGCGG---G--TAGC-GGGACGGA-GCC-ACTACGCCGGCCAGAAAGAC
* * * * *
14300544 GGG-ATGCACAAGCCATGGATCGATA-AGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTA
689 GGGTATGCGCAAGCCGTGGATCGATAGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * * * * *
14300607 CAT-GCCAATTCCCTTTTTATGGCTTGTAAATTCA-TA-CAGTGGTCCC-TTAAGCCTTCACGTG
754 CGTGGCCAATGCCATTTGTATGGCTTGTAAATTCAGGACCAATGGTCCCTTTAAGCCTTCACGTG
* * **
14300668 AAGTTTCATGGCAAGACGACTCGTTTTTTATTTTT-CATGATTTTTTTAAACTTTTGCGGGT-TC
819 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCACGATTTTTAGAAACTTTT-----TAT-
14300731 GAGATTTTTTTTAAAATTTTTTCGAAA
878 G-G-----------------TTCG--A
* * * * * *
14300758 GGACTTTTGGCCCCAAACTT-GGAAGACGGGATCCTTGTAGTTTTTTTTGGCTGTGCAC-AAAAA
1 -GATTTTTGGCCCCAAACTTCGTAA-ACGTGATCCTTGTA-TTTTTGTGGGC-ATGCACAAAAAA
* *
14300821 ATTCATGCTAAAAACTCGAAGTGTACAAAGATTTTGTGGGACCATTTTGAAAAAAGTGTCCCCAT
62 AATCA-GCAAAAAACTCGAAGTGTAC-AAGATTTTGT--GACCA-TTTGAAAAAAGTGTCCCCA-
* * *
14300886 TTTCAGACACTTTTAATGGCTACTGGCCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGG
121 TTTCAGACAC-TTTAATGGCTACTGG-CAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* ** *
14300951 TGTGAGTTCTCAAAATTTGATGAGGGATAGGGGGCC-A-AT----------TACCAGCACTCATC
184 TGTGAGTTCT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * * * * * **
14301004 GCACATCATTTATGCACACCCCCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAG
248 GCACATCATGTGCGCACA-CCCCC-CAGCCCCCCCGATCGCTGAAACCCTAATGCCGTCGGTCAG
** * *
14301069 GTTCTCCGGTGATGCTTCGGCGATGGTGCCCC-AGCGATGAAAAATACGGCACCAGCACATGGC-
311 GTTCTCCGACGATGC-TCCG-GATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACAT-GCT
* * * * * * * *
14301132 CGAGCCTAGCATGTGCTACCGCAACCCTTGGT-CTAGTCCGATCTTTGACTGGGAATGAACTCCG
372 CGAGCCCAGCATGTGCTGCAGCAACCC-TCGTCCGA-TCTGATCTTAGACTGGGAATGAACTCTG
* ** * * ** * *
14301196 CATGTTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAACAAGCGTGCGGGCGCT
435 TATGCATAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
* * * *** * * *
14301261 CAGTCGGCCAGAAGGACGAGATGCGTAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTGCAA
500 CAGCCGGCCAG-AGGGCGGGATGCGTAAGCCGAGGATCAATCGGGTCCCCCTCTGCGTACTGCCA
* * * *** * * * * * * **
14301326 ATCCTGCTGCCACAACCCACGGTCTGGTC-CGTTCTTAGAATGGTAATGAACTCTGTAT-GCCTA
564 TTCCTGCTACCACAACCCTCAACCTAGTCTC-ATCATAGACTGGGAACGAACTCCATATGGCCTA
* * **
14301389 AGCCAATCGATGAAAC-G-A-GCGGGT---GGG-CGG-G-CACTACGCCGGCCAGGGAGACGGG-
628 AGCCAACCGACGAAACAGAAGGCGGGTAGCGGGACGGAGCCACTACGCCGGCCAGAAAGACGGGT
** **
14301444 ATGCGCAAGCCAAGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT-
693 ATGCGCAAGCCGTGGATCGATAGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* * *
14301507 GCCAATGCCATTTTTATGGCTTGTAAATTCA-TA-CAATGGTCTC-TTAAGCCTTCACGTGAAGT
758 GCCAATGCCATTTGTATGGCTTGTAAATTCAGGACCAATGGTCCCTTTAAGCCTTCACGTGAAGT
*
14301569 TTCATGGCAAGACGACTCGTTTTCTATTTTT-CACGATTTTCA-AAACTTTTTACGGTTCAGGAT
823 TTCATGGCAAGACGACTCGTTTTCTATTTTTCCACGATTTTTAGAAACTTTTTA----T--GG--
14301632 TTTTTTAAATTTTTTCGGA
880 -------------TTC-GA
* * * * * * *
14301651 TGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAA
1 --GATTTTTGGCCCCAAACTTCGTAAACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAAA
*
14301716 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
64 TCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * **
14301781 ACTTTAATGGCTACTGGCAGCCAACCTGTAAAATCTCAAATACTCTTTAAGGGATTGTGAGTTCC
129 ACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-C
**
14301846 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTTACATCATG
193 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * ** *
14301911 TGCGCACACCCCCCTCCGACCCCCCGATCG-TCGGAACCCTAATGCTATCGGTCAAGTTCTCCGA
258 TGCGCACA-CCCCC-CAGCCCCCCCGATCGCT-GAAACCCTAATGCCGTCGGTCAGGTTCTCCGA
* * * *
14301975 CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCA
320 CGATGCTCC-G-GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
* * ** * *
14302040 TGTGCTGCTGCAACCCTCGGTCCGGTCAAATCTTAGACTTGGAATGAACT-TCATATGCATAGAC
383 TGTGCTGCAGCAACCCTC-GTCCGATCTGATCTTAGACTGGGAATGAACTCT-GTATGCATAGAC
*
14302104 TGGGAATGAACTCCGTGTGCCAAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
446 TGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * ** *
14302169 AGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCATTCCTGTTGTCG
511 AGGGCGGGATGCGTAAGCCGAGGATCAATCGGGTCCCCCTCTGCGTACTGCCATTCCTGCTACCA
* * * * * * *
14302234 TAACCCTCAGCCTGGTCTCATCTTAGACTGGGAATGAACTTCGTATGGCCTAAGCCAACCGACGA
576 CAACCCTCAACCTAGTCTCATCATAGACTGGGAACGAACTCCATATGGCCTAAGCCAACCGACGA
* * *
14302299 AACAAGAAGGCGGGGTAGGCGGGATCCGGTGGGCCACTACGTCGGCCAGAGAGACGGGTATGCGC
641 AAC-AGAAGGC-GGGTA-GCGGGA--C-G-GAGCCACTACGCCGGCCAGAAAGACGGGTATGCGC
*
14302364 AAGCCGTGGATCGATAGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGGCAAT
699 AAGCCGTGGATCGATAGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCCAAT
14302429 GCCATTTGTATGGCTTGTAAATTCAGGACCAATGGTCCCTTTAAGCCTTCACGTGAAGTTTCATG
764 GCCATTTGTATGGCTTGTAAATTCAGGACCAATGGTCCCTTTAAGCCTTCACGTGAAGTTTCATG
* *
14302494 GCAAGATGACTCGTTTTCTATTTTTCCACGATTTTTCGAAACTTTTTATGGTTCGA
829 GCAAGACGACTCGTTTTCTATTTTTCCACGATTTTTAGAAACTTTTTATGGTTCGA
* *
14302550 GATTTTTTTTTAAAAATGTTTCGGCAGGAGTTTGGCCCCAAACTTGGT-AATGTGATCC-TGTAT
1 G--------------A---TT---------TTTGGCCCCAAACTTCGTAAACGTGATCCTTGTAT
* * * *
14302613 TTTT-TGGGAGATGGC-CCAAGAAATTCAGGCAAAAAAACTCGCAAGTGTACAAGATTTTGTGAC
40 TTTTGTGGG-CAT-GCACAAAAAAAATCA-GC-AAAAAACTCG-AAGTGTACAAGATTTTGTGAC
*
14302676 CAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCT
100 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCT
*
14302741 CAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
165 CAAATGCTCTTTAAGGGGGTGTGAGTTC-TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
14302806 CCAAGTACCAGCACCCATCGCACAACAAGTGCGCACACCCCCCAGCCCCCCCGATCGCTGAAACC
229 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCTGAAACC
** *
14302871 CTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCTTCGATGAAGAAAAATACG
294 CTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG--GATGGTGCCCCGACGAAGAAAAATACG
* * * *
14302936 GCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGATCTGATCTTAGACT
357 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTC-GTCCGATCTGATCTTAGACT
* ** *
14303001 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATAAAACG
421 GGGAATGAACTCTGTATGCATAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACG
* * * * *
14303066 AGCGTGC-GGCAGCTCAGTCGGGCAGAGGGGTGGGATGCGTAAGTCGAGGATTAA-CTGGGTCCC
486 AGCGTGCGGGC-GCTCAGCCGGCCAGA-GGGCGGGATGCGTAAGCCGAGGATCAATC-GGGTCCC
* * * *
14303129 CTTCTGGGTACTGTCGA-TCCTGCTACCACAACCCTCAATCTAGTC-CGATCATAGACTGGGAAC
548 CCTCTGCGTACTG-CCATTCCTGCTACCACAACCCTCAACCTAGTCTC-ATCATAGACTGGGAAC
*
14303192 GAACTCCATAT-GCTTAAGCCAACCGACGAAAC-G-A-GC-GG-A-CGGG-C-GAG-CACTACGC
611 GAACTCCATATGGCCTAAGCCAACCGACGAAACAGAAGGCGGGTAGCGGGACGGAGCCACTACGC
*
14303247 CGGTCAGAAAGACGGG-ATGCGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACAT
676 CGGCCAGAAAGACGGGTATGCGCAAGCCGTGGATCGATAGGGGTGGTAGGTGGGTTTAGGCACAT
* * *
14303310 CTTCATATTTCTGTGT-GCCAATGCCATTTTTATGGCTTGTAAATTC-GTA-CAATGGTCCC-TT
741 CTTCATATTTCTGCGTGGCCAATGCCATTTGTATGGCTTGTAAATTCAGGACCAATGGTCCCTTT
* *
14303371 AAGCCTTCACGTGAAGTTTCTTGGTAAGACGACTCGTTTTCTATTTTT-CACGA-TTTTAGAAAC
806 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCACGATTTTTAGAAAC
14303434 TTTTTACTGTTCAGGATTTTGCAAAATTTTTTTGGAA
871 TTTTTA----T--GG---TT-C------------G-A
* *
14303471 GGATTTTTGGCCCCAAACTTCGTAAACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAAT
1 -GATTTTTGGCCCCAAACTTCGTAAACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAAAT
* * * * * *
14303536 CAGCTAAAAACTAGAAGTGTATAAGATTTTGTGACCATTTAAAAAAAATGTCCCCATTTCAAACA
65 CAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
14303601 CTTTAGTGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
130 CTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTG
* * *
14303666 AGGATTTGATGAGGGATAAGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATTT
195 AGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
14303731 GCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCGAATGCCGTCGGTCAGGTTCT-C--CGA-
259 GCGCACACCCCCCAGCCCCCCCGATCGCTGAAACCCTAATGCCGTCGGTCAGGTTCTCCGACGAT
* * *
14303792 ----C-GATGGTGCCCCGACGAAGAAAAATACGACACCTGCACATGCTCAAGCCCAGCATGTGCT
324 GCTCCGGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
14303852 GCAGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGC
389 GCAGCAACCCTCG-TCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGC
14303904 CTAAGCCAAC
Statistics
Matches: 2670, Mismatches: 326, Indels: 335
0.80 0.10 0.10
Matches are distributed among these distances:
883 1 0.00
884 99 0.04
885 62 0.02
886 18 0.01
887 13 0.00
888 19 0.01
889 5 0.00
891 11 0.00
892 27 0.01
893 21 0.01
894 52 0.02
895 220 0.08
896 129 0.05
897 432 0.16
898 36 0.01
899 11 0.00
900 51 0.02
901 13 0.00
902 8 0.00
903 28 0.01
904 42 0.02
905 24 0.01
906 25 0.01
907 4 0.00
908 3 0.00
909 1 0.00
910 2 0.00
911 5 0.00
912 2 0.00
913 26 0.01
914 21 0.01
915 42 0.02
916 32 0.01
917 2 0.00
918 11 0.00
919 83 0.03
920 31 0.01
921 354 0.13
922 242 0.09
923 134 0.05
924 201 0.08
925 10 0.00
927 5 0.00
928 19 0.01
929 13 0.00
930 14 0.01
931 66 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GATTTTTGGCCCCAAACTTCGTAAACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAAATC
AGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCAGCCCCCCCGATCGCTGAAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGC
TCCGGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC
AGCAACCCTCGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAGACTGGGAATGAA
CTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGAT
GCGTAAGCCGAGGATCAATCGGGTCCCCCTCTGCGTACTGCCATTCCTGCTACCACAACCCTCAA
CCTAGTCTCATCATAGACTGGGAACGAACTCCATATGGCCTAAGCCAACCGACGAAACAGAAGGC
GGGTAGCGGGACGGAGCCACTACGCCGGCCAGAAAGACGGGTATGCGCAAGCCGTGGATCGATAG
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCCAATGCCATTTGTATGGCTTG
TAAATTCAGGACCAATGGTCCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCCACGATTTTTAGAAACTTTTTATGGTTCGA
Found at i:14305523 original size:26 final size:26
Alignment explanation
Indices: 14305475--14305525 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14305465 CGTCCGATCA
**
14305475 TAGACTGGGAATAAACTTTGTATGCT
1 TAGACTGGGAATAAACTCCGTATGCT
*
14305501 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATAAACTCCGTATGC
14305526 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCT
Found at i:14306399 original size:26 final size:26
Alignment explanation
Indices: 14306361--14306414 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14306351 GATCCGATCT
* *
14306361 TAGACTGGTAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14306387 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14306413 TA
1 TA
14306415 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:14306959 original size:885 final size:885
Alignment explanation
Indices: 14303848--14309074 Score: 6360
Period size: 886 Copynumber: 5.9 Consensus size: 885
14303838 GCCCAGCATG
* * * ** *
14303848 TGCTGCAGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14303913 CCGAAGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACAAGCGGGC--GC-GGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
14303978 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-AGTGTCAATGCC
124 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCC
14304042 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
188 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
14304107 CGACTCGCTTTCTATTTCTCACGATGTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
253 CGACTCGCTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
14304172 TCAGAAGGAGTTTTGGCGCCAAACTTGGTAGCCAG-GATCCTTGTAGTTTTGTTGGCATGCATAA
318 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14304236 AAAAATTCAGCTAAGAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATT
382 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
14304301 TCAGACACTTTAATGGCTGCTGGCAACAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTG
447 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** * ** *
14304366 AGTTCTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCTGCCATCCCAC
512 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
14304431 ATCTTGTGTGCA-ACCCCCCGCTCGGCCCCCCCGATC-ACTGAAACCCCAATACTGCCAGTCAGC
577 ATCATGTGCGCACA-CCCCC-C-CGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGC
* ** * * *
14304494 TTCTCCGGTTATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGT
638 TTATCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * *
14304559 GCTGCTGTAACCCTTGGTCC-AGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAG
703 GCTGCCGCAACCCTCGATCCGA-TCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
14304623 GAATGAACTCCATACGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCGCTCAACCGGCCAAAGG
766 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGG
* * * * * *
14304688 GGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTATGTGCTTCTGATCC
831 GGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** * * *
14304743 TACTACCACAATGCTCGGTGTGGTTCAATCTTAGACTGGGAATGAA-TACCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCA
* * **
14304807 ACCGACGAAACGAGCGGACGGGCAGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACAAGCGG--GCGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
**
14304872 GTGGATCGATAGGGTGGTAGGTGGGTTTAGG-ACATCTTCATATTTCTGCATGCCAATGATATTT
127 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
14304936 TTATGGCCTGTAAATTCATACAGTGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGAC
192 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** *
14305001 TCGCTTTCTATTTCTCACGATTTTCAAAAAC-TTTTACGGTTTGGGATTTTTTAAAATTTTTTCA
257 TCGCTTTCTATTTTTCACAATTTT-TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * * *
14305065 GAAGGAGTTTTGGCCCCAAACTTGGTAGCCATGATCCTTGTATTTTTGTTGGCTTGCATAAAAAA
321 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
14305130 ATTCAGCTAAGAACTCGAAGGGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTCCAG
386 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
14305195 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA--GGGTGTGAGTT
451 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14305258 CT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
516 CTCA-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
14305322 ATGTGCGCACACCCCTCCGGCCCCCCCGATCGACAGAACCCCAACGCTGCAGGTCAGGTTCTCCG
580 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGCTTATCCG
* * * * *
14305387 GCGATGGTGCGCCGACGAAGAAAAATGCGGCACCAGCATATTCCTGAGCCCAGCATGTGCTGCCG
645 GCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * **
14305452 CAACCTTCGATCCCG-TCCGATCATAGACTGGGAATAAACTTTGTATGCTTAGACTGGGAATGAA
710 CAACCCTCGAT-CCGATCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
14305516 CTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGTGTTCAGCCGGCCAGAGGGTCGGGA
773 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * ** *
14305581 TACACAAGTCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTTGATCT
838 TGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
** ** ** *
14305629 TGCTGCTACAACCCTCGGTCTGATCTGATCTTAGACTGGGAACAAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14305694 CCGACGAAATGAA-CGGGCG-GGCGGGCACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTG
66 CCGACGAAA-CAAGCGGGCGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
14305757 GATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCCTATTTTTGCATGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
14305822 TGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * * *
14305887 CTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGATTTGGGATTTTTTAAAATTTTTTCAGTAG
260 CTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
* *
14305952 GATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * * *
14306017 AGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAGAAGTGTTCCCATTTTAGACAC
390 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
14306082 TTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTAA
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* *
14306147 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGTACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * ** *
14306212 CGCACACCCCTTTCGTCCCCGTCGATCGTCGGAACCCCAATGCCGCTGGTCAGCTTATCCGGCGA
585 CGCACACCCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGCTTATCCGGCGA
* * * *
14306277 TGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCCCGAGCGCAGCATGGGCTGCCGCAAC
649 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * *
14306342 CCTCGGTCCGATCCGATCTTAGACTGGTAATGAACTTCGTATGCCTAGACTGGGAATGAACTCCG
714 CCTCGATCCGATCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * **** *
14306407 TATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAGTTTACCAGAGGGGCAGGATGCGC
778 TATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * *
14306472 AAGTCGGGGAACAACCGGGTCCCCCTCTGCGTGCTGCCGATCT
843 AAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
14306515 TGCTACCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14306580 CCAACGAAACAAGCGGGTG-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTG
66 CCGACGAAACAAGCGGGCGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
14306644 ATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATA-TTCTTGCATTCCAATGCCATTTTTA
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TGCATGCCAATGCCATTTTTA
** * * *
14306707 CAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCGTGGCAAGACGACTTG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
14306772 TTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAG
260 CTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
* *
14306837 GAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
14306902 AGCTACAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
390 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
14306967 TTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGG-GTGAGTTCTC
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GGTGTGAGTTCTC
*
14307031 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
519 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * *
14307096 GCGCACACCCCCCCGACCCCCCCGATCATCAGAACCCTAATGCCGTCAGTCAGGTTCTCCGGCAA
584 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA-G--CT-----TA
** * * *
14307161 TGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATTCGGCACCAGCACATGCCCGAGGCCAGTA-GT
641 T-C-C-GGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * ** * *
14307225 GCTACCGCAACCCTCGATCCGGTCTGAGATTAGAACTGGAATG-AGTCCATATGCTTAGACTCGG
703 GCTGCCGCAACCCTCGATCCGATCCGATCTTAG-ACTGGAATGAACTCCGTATGCTTAGACT-GG
* * *
14307289 ATAAAATGAACT-CGATATGCC-AAGTCAACCCATG-AACGACCGCGTGC-GGTCGTCTCAGCCT
766 ---GAATGAACTCCG-TATGCCTAAGTCAACCCACGAAACGA--GCGTGCAGG-CG-CTCAGCCG
* * *
14307350 G-CA-A-GGGCGGAGATGCGCATG-C-GGGAT-GACCGAGTCCCTTCTCTACGT-CTGCCGATCC
823 GCCAGAGGGGCGG-GATGCGCAAGTCGGGGATCGACCGGGTCCC-CCTCTACGTGCTGCCGATCC
* * * * * ** *
14307408 TGCTGCCGTAAACCTTGGTCCGGTTTGAATCTTACACT-GGAATGAAC-CCGTATGCC-AAG-CA
1 TGCTGCCGCAACCCTCGGT-CTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
14307469 ACCGATGAAATGATGCGGCCGAGCGGGGGGTACTACACCTGGCCA-AGGAAACGGGATGCGGCAA
65 ACCGACGAAA-CAAGCGG--GCGCGGCGGGCACTACGCC-GGCCAGA-GAGACGGGATGC-GCAA
* * * * **
14307533 GCCGTTGGATTGATAGGGTGGTCGGTGGGATTAGGTACATCTTCATATTTCTGTTTGCCAATGCC
124 GCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
14307598 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGA
188 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14307663 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGTTTCGGGATTTTTTAAAATTTTT
253 CGACTCGCTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
14307728 TCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAA
318 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14307793 ACAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
383 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14307858 CAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
448 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
14307923 GTTCTCAAGCTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTACCAGTACCCATCGCATA
513 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
14307988 TCATGTGCGCACA-CCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGCCAGGTTATC
578 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGCTTATC
* * ** * * *
14308052 CGGGGATGGTGCCCCGATGAAGAAAAATTTGGCACCAGCAGATGTTCC-AGCCCAGCATATGCTG
643 CGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG-CCCGAGCCCAGCATGTGCTG
* * * * *
14308116 TCGCAACCCTCGGTCTGATCCGATCTTAGATTGGTAATGAACTCCATATGCTTAGACTGGGAATG
707 CCGCAACCCTCGATCCGATCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
14308181 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGG
771 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGG
* * * *
14308246 GATGCGTAAGTCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
836 GATGCGCAAGTCGGGGATCGA-CCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
14308296 TGGTGCCGCAACCATCAGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14308361 CTGACGAAACAAGCGGACGGACGGGCCGGCCGGCGGGCACCACGCCGACTAGAGAGACGGGATGC
66 CCGACGAAAC-A----A--G-CGGG-C-G-CGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
14308426 GCAAGTCATCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAAT
120 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * * *
14308491 GCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGACTTCACCTGAAGTTTCGTGGCA
185 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * ** *
14308556 AGACGACTCGTTTTTTATTTTTCATAATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATT
250 AGACGACTCGCTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * *
14308621 TTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTGTTGTTGGCATGCAC
315 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
14308686 AAAAAAATTCAGCTAAAAAGTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCA
380 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
14308751 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTTTTTAAGGGGGTG
445 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
14308816 TGAGTTCTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGTACCCATCAC
510 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
14308881 ATATCATGTGCGCACACCCACACTGG-CCCCCCGATTGTCGGAACCCCAATGCCAG-CGGTCAGG
575 ACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC-GCCGGTCA-G
* **
14308944 TTCTCCGATGATGCTCCGACGATGGTGTGCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
637 --CT----T-A---TCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* * * * *
14309009 GCCCAGCATGTGCTGCCGCAACTCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
692 GCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACT-GGAATGAACTCCGTATG
14309074 C
756 C
14309075 CTAAGCAAAC
Statistics
Matches: 3748, Mismatches: 477, Indels: 201
0.85 0.11 0.05
Matches are distributed among these distances:
882 72 0.02
883 314 0.08
884 57 0.02
885 520 0.14
886 730 0.19
887 69 0.02
888 136 0.04
889 12 0.00
890 324 0.09
891 89 0.02
892 11 0.00
893 59 0.02
894 73 0.02
895 150 0.04
896 460 0.12
897 121 0.03
898 435 0.12
899 16 0.00
900 1 0.00
904 1 0.00
905 1 0.00
907 2 0.00
908 93 0.02
909 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
TGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGGCGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGC
TTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGCTTATCCGGCGATG
GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
TCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
Found at i:14308180 original size:26 final size:26
Alignment explanation
Indices: 14308140--14308192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14308130 CTGATCCGAT
* *
14308140 CTTAGATTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14308166 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14308192 C
1 C
14308193 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14311590 original size:26 final size:26
Alignment explanation
Indices: 14311553--14311605 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14311543 CCAGTTTGAT
*
14311553 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
14311579 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
14311605 C
1 C
14311606 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:14312474 original size:26 final size:26
Alignment explanation
Indices: 14312445--14312497 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14312435 CCAGTCCGAT
* *
14312445 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
14312471 CTTAGACCGAGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
14312497 C
1 C
14312498 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:14313381 original size:26 final size:26
Alignment explanation
Indices: 14313337--14313389 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14313327 CCAGTCCGAT
* * *
14313337 CTTAGACTGGGACTCAACTTCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
*
14313363 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
14313389 C
1 C
14313390 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:14313962 original size:899 final size:897
Alignment explanation
Indices: 14309045--14316041 Score: 9069
Period size: 899 Copynumber: 7.8 Consensus size: 897
14309035 AATCTGGTCT
* * * *
14309045 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAAACCGACGAAACAAGCAGGCAAGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG---GTGGGC
* * ** *
14309110 AGGCGGGCACTACGTCGACCAGAGAGACAAGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTG
62 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* ** *
14309175 GGTTTAGGTACATCTTCATATTTCTGCATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAA
127 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
14309240 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTT
192 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** *** *
14309305 TTGAAACTTTTTA---TT------TTTAAAAAATTTTTT-GGAAGGAGTTTTGGCCCCATACTTG
257 TCAAAACTTTTTACGGTTCGGGAATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
14309360 GTAGACGTGATCGTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
322 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTA
*
14309425 CAAGATTTTGTGACCATTTGAACAAAA-TGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGC
386 CAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
14309489 AAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
14309554 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACACCCACCCCGGCCC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCC
** * * * *
14309619 CTCCGATCACCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCC
579 C-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCC
* * * * * ** * *
14309684 CGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTCCTACCGCAACCTTCGGT-
643 CGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTC
* * * ** *
14309748 CTGATCCGATCTTTGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTTGTATGCCA
708 CAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
14309813 AAGTCAACCCACGAAACGAGCGTGCGGGGGCTCAGCCGGGCAAATGGGCGGGATGCACAAGCCGG
772 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGG
* * ** *
14309878 GGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAATCCGGTCT
837 GGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCC-GTCC
* * * * * **
14309940 AATCTTAGACTGGGAATGAACTCCATATGCGTAAGTCAACCGATGAAATAAGC----GGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGC
* * * * *
14310001 GGGCACTACG-CTGGCCAGAAAGACGGGTTACGCAAGCCATGGATCGATAGGGTGGTAGGTGAGT
66 GGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** * * *
14310065 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAACGA
130 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
14310130 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* ** * * *
14310195 AACCTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCGGGAGGAGTTTTGGCCCCAACCTTGGTA
260 AAACTTTTTACGGTTCGGGAATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
14310260 GAGGTGATCCTTCTACATTTT-TTGGCATGCATAAAAACATTTAGCAAAAAACTCGAAGTGTACA
325 GACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACA
**
14310324 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTAAAGACACTTTAATGGCTACTGGCAAG-AA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAA
14310388 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ATGGTTTGATGAGGGATAGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGG
* * **
14310452 GGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCTCCTCAACCCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCC
* * * * * * * * * *
14310517 CTGATCGACGAAACCCTATTGTCGTCGGTCAGGTTATCCGACGATGCTCTGGCAATGGTGCCCCG
580 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCG
* * * * * *
14310582 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCT-ACTGCAAGCATC-GATC
645 ACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTC-GCAACCCTCAG-TC
** * * * * * *
14310645 TGGTCTGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACAGGGAATGAACTCTGTTTGCCTA
708 CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
14310710 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGACGGGCGGGATGCGTAAGTTA-G
773 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CAGG
* * * * * *
14310774 GGATCGGTCGGGTCCCCCTCTACCTGCTACCGATCCTGCTGTCGCAACCCTCGGTCTGGTCT
837 GGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-CGTCC
* **
14310836 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGC
* * * *
14310901 AGGCACTACG-CTGACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGT
66 GGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
14310965 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * **
14311030 TCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCATTTTCTATTTATCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* *
14311095 AAACTTTTTACGGTTCGGG-ATTTTTAAAATTCTTTT-GGAAGGAATTTTGGCCCCAAACTTGGT
260 AAACTTTTTACGGTTCGGGAATTTTTTAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * **
14311158 AGATGTGATCCTTGT-TTTTATTTTGGCATGCCCAAAAACATTCAGCTAAAAACAAGAAAGTGTA
324 AGACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCG-AAGTGTA
*
14311222 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
14311287 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
14311352 GGCCAATATAACGGCCAATTACCAGCACCCATCGCACAACATGTGCACACA-CCCCCCGGCCCCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCC
* * * *
14311416 CCGATCATCGGAACCCCAATACCGCCGGTCAAGTTCTCC-AGTGATGCTCTGGCGATGGTGCCTC
580 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCTGGCGATGGTGCCCC
* * * *
14311480 GATGAAGAAAAATGTGTCATCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCC
644 GACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCC
** *
14311545 AGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAA
709 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
14311610 GTCAACCCATGAAACGAGCGGGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAGGCCGAGG
774 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGG
* * * * * * *
14311675 ATCGATCGGGTCCCCCTTTACGTGCTGCTGATTCTGCTGCTGTAACGCTCGGTCTGGTCC
839 ATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-CGTCC
* *
14311735 GATCTTAGACTGGGAATGAACTACATATGCCTAAGCCAACCGACGAAACGA-C-------CGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGC
* **
14311792 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATTAATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
14311857 TAGCCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * * *
14311922 CCCTTAAGCCATCACGTCAAGTTTCATGGCAGGACGACCCGTTTTCTCTTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCA
** * * *
14311987 AAA-TTTTTGTGGTTC-CGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACTTGGC
260 AAACTTTTTACGGTTCGGGAATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
14312050 AGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACA
* * *
14312115 AGATTTTGTGACCATTTGAAAAAAGTGTCCTCGTTTCAGACACTTTAATGGCTATTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
14312180 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAAGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * *
14312245 CCAATATAATGGCCAATTACCAGTACCCATCGCACAACATGTGCACACACCCCCCCGACCCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCC
* * *
14312310 GATCATCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGAC
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGAC
** * *
14312375 GAAGAAAAATACGTCACAAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCAGT
647 GAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCAGT
* *
14312440 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGAGAATGAACTCCGTATGCCTAAGTC
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
14312505 AACGCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCATGTC-GAGGAT
777 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CAGGGGAT
* * * * * ** *
14312569 CGATCGGGTCCCCCTATACATGCTGCTGATCCTACTGTCATAACGCTCGGTCCGATCC
841 CGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG-TCC
* * * *
14312627 AATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGA-TAAA--A-----TGAGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGC
* * * * *
14312684 AGGCACTACGCCGGCCAGAGAGACGGGATACGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
14312749 TAGCCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * **
14312814 CCCTTAAGCCATCACGTCAAGTTTCATGGCAGGACGACTCGTTTTCTCTTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
*** ** * * *
14312879 AACTTTTCGTGGTTC-CAAATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACATGGCA
261 AACTTTTTACGGTTCGGGAATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
14312943 GACATGATCCTTTTATTTTTGTTGGCATGCACAAAAACATTTAGCTAAAAACTCAAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAA
* * *
14313008 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTCCAGACACTTTAATGGTTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
14313073 CTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGAGGGATAGAGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
14313138 CAATATAAGGGACAAGTACTAGCACCCATCGCACATCATGTGCGCACACCTCCCCGGTCCCCCTG
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCG
* * * * * *
14313203 ATTGTCGGAACCCCAATACCACCGGTCAAGTTCTCCGGTGATGCT-TCGACGATGGTGCCCCGAC
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCT-GGCGATGGTGCCCCGAC
* * * * *
14313267 GAAGAAAAATGTGACACTAGCACGTGCCCAAGCCCAGCATGTGCTGTCGGAACCCT-TGATCCAG
647 GAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAG-TCCAG
* * * *
14313331 TCCGATCTTAGACTGGGACTCAACTTCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGT
711 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
14313396 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGACGGG-GGGATGCGCAAGCAGGGGAT
776 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGAT
* * * *
14313460 TGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGTTGTCGCAACCCTCGGTCCAGTCG
841 CGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCC-GTCC
** *
14313518 GATCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGTGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGC
* *
14313583 GGGCACTACGTCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
***
14313648 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATATATTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
14313713 CCCTTAAGCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
**
14313778 AACTTTTTACGGTTCGGGAATTTTTTAAATTTTTTCGGAAGGAGTTTTGGATCCAAACTTGGTAG
261 AACTTTTTACGGTTCGGGAATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
14313843 ATGTGATCCTTGTATTTTTGTTGGCATGTAGAAAACAATTCAGCTAAAAACTCAAAGTGTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAG
* *
14313908 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGTTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14313973 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
14314038 AATATAAGGGCCAAGTACCAGCACCCATTGTACATCATGTGTGCACACCCCCCCGACCCCCCCGA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCGA
* * * * * * *
14314103 TCGCCGGAACCCCAATGCTGCTGATCAAGTTCTCCGATGAAGCT-TCGGGGATGGTGCCCCGACG
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCT-GGCGATGGTGCCCCGACG
* **
14314167 AAGAAAAGTGTGGCACCAGCACATGCCCACA-CCCAGCATGTGCTG-CTGCAACCCTCAGTCTGG
648 AAGAAAAATGTGGCACCAGCACATGCCCA-AGCCCAGCATGTGCTGTC-GCAACCCTCAGTCCAG
* * * * *
14314230 TCCAATCTTAGACTGGGAATGAACTCCATGTGCTTAGATTAGGAATGAACTCCGTATGCCTAAGT
711 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * * *
14314295 CAACCCATGAAACGAGCTTGTGGGTGCTAAGCTGGCCAGAGTGGCGGGATGCGTAAGCCGTGGAT
776 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGAT
* * ** * * * * * *
14314360 CG-GCTGGTCCCCCTCTGTGTGTTGTCGATCTTGCTACCACAACCCTCGGTTCGATCC
841 CGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG-TCC
* *
14314417 GATCTTAGACTGGGAATGAACTGCGTATGCCAAAGCCAACCGACGAAACGAGCGGGT--------
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGC
* * * *
14314474 GGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGTCGTAGATCGGTAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
14314539 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
14314604 CCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* * * *
14314669 AACTTGTTGCGGTTCGAG-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AACTTTTTACGGTTCGGGAATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
14314733 GATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAAATGGAAGTGTACAAG
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
14314798 ATTTTGTGACCATTTGAAAAAAATGTCCCCA-TTCTAGACACTTTAATTGCTACTGGCAGCAAAC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAAC
* * *
14314862 CTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGA
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
14314927 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
* ** * *
14314992 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCT-ATGATGGTGCCCCGGCA
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT-CTGGCGATGGTGCCCCGACG
* * **
14315056 AAGAAAAATGTGGCACCAGCACTTGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTC
648 AAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCAGTC
*
14315121 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCA
713 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * *
14315186 ACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCA-TGGATC
778 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CAGGGGATC
* * * * * *
14315250 GGT-TGGTCCCCCTCTACGTGCTACCGTTCCTGCTACCGCAACCCTCGGTTCGATCC
842 GATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG-TCC
* *
14315306 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGT--------
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGC
*
14315363 GGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
**
14315428 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
14315493 GCCTTAAGCCTTCACGTCAAGTTTCATGGCTAA-ACAACTCGTTTTCTATTTTTCACGATTTTCA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * * *
14315557 ATACTTTTTACAGTTCGGGATTTTTTTAATTTTTTTGGGAAGGAGTTTTGG-CCCAAACTTGGTA
260 AAACTTTTTACGGTTCGGGAATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
14315621 GACGTGATCCTTGTATTTTTGTT-GCTATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACA
325 GACGTGATCCTTGTATTTTTGTTGGC-ATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACA
* * *
14315685 AGATTTTGTGTCCATTTAAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
14315750 CCTGTAAATTCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
14315815 CCAATATAAGGGCCATGTACCAGCACCAATCGCACATCATGTGCGCACACCGCCCCCGGCCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCC
* * * * **
14315880 AATCGTTGGAACCCCAATGTCGCCGGTCAGGTTGTCCGATGATGCTCTGATGATGGTGCCCCGAC
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGAC
* * * * *
14315945 GAAGAAAATTATGGCACGAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCAGT
647 GAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCAGT
*
14316010 CCAATCTTAGACTGGGAATGAACTCCGTATGC
712 CCGATCTTAGACTGGGAATGAACTCCGTATGC
14316042 CTAAGCCAAC
Statistics
Matches: 5402, Mismatches: 612, Indels: 181
0.87 0.10 0.03
Matches are distributed among these distances:
886 1 0.00
887 191 0.04
888 46 0.01
889 732 0.14
890 377 0.07
891 753 0.14
892 1110 0.21
893 6 0.00
894 1 0.00
895 47 0.01
896 332 0.06
897 245 0.05
898 14 0.00
899 1141 0.21
900 405 0.07
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGC
GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
AACTTTTTACGGTTCGGGAATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGACGAAG
AAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCAGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGATC
GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGTCC
Found at i:14315154 original size:26 final size:26
Alignment explanation
Indices: 14315125--14315177 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14315115 CTGGTCCGAT
*
14315125 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14315151 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14315177 C
1 C
14315178 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14316750 original size:26 final size:26
Alignment explanation
Indices: 14316721--14316773 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14316711 TTAGTCCGAT
*
14316721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
14316747 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
14316773 C
1 C
14316774 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14321435 original size:26 final size:26
Alignment explanation
Indices: 14321384--14321436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14321374 CTGGTTCGAT
*
14321384 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14321410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14321436 C
1 C
14321437 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14322309 original size:26 final size:26
Alignment explanation
Indices: 14322280--14322330 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14322270 GTGGTCCGAT
14322280 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14322306 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14322331 ACCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14323980 original size:11 final size:11
Alignment explanation
Indices: 14323964--14323992 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14323954 CAGGTTCTCC
14323964 GACGATGCTCT
1 GACGATGCTCT
14323975 GACGATGCTCT
1 GACGATGCTCT
14323986 GACGATG
1 GACGATG
14323993 GTGCCCCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (11 bp):
GACGATGCTCT
Found at i:14324108 original size:26 final size:26
Alignment explanation
Indices: 14324072--14324124 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14324062 CAGGTCTGAT
*
14324072 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14324098 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14324124 C
1 C
14324125 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14325827 original size:899 final size:897
Alignment explanation
Indices: 14319800--14327671 Score: 9781
Period size: 899 Copynumber: 8.8 Consensus size: 897
14319790 CGCCCCCCCC
* * * *
14319800 GATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA--GTG-GGCGGGCA
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCG
** * *
14319862 GGCACTACGCCTACTAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
***
14319927 AGGCATC-TCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCA-CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
14319991 CCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * *
14320056 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGCAATTTTGGCCCCAAACTTGGTAG
260 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
14320121 ACGTTATCCTTGCATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * * * *
14320185 ATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGATACTTTAATTGCTACAGGCAGGAAACA
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14320250 TGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * * *
14320315 CATATAAGGGCCACGTACCAGTACCCATTGCACATCATGTGCGCACACCCCCCCCGCCCCCCACA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCC-CG
* *
14320380 ATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGCG
582 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACG
* * *
14320445 AAGAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAACCCTCGGTCT-G--
647 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
*
14320507 -G---TT---C---G-AT---CT---TA-G----G-CTGGGAATGAACTTCGTATGCCTAAGTCA
712 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * ** **
14320549 ACCCATGAAATGAGCGTGTGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCATAAGCTAGGGATCG
777 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* ** * *
14320614 GTTGGGTCCCCCTCTGCA---T---G---CTGCTA---TAACCCTCAGTCTGGACA
842 GTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAGTCT
* *
14320658 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCTGGCGGGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--G--GGC
* * * *
14320723 AGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATTGATAGGGTGGTA
58 -GGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
14320788 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTCATGGCTTGTAAATTCAT
122 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
14320853 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-TC
187 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-
* * * * *
14320917 AATTTTTGAAGCTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTCCAA
251 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* **
14320982 ACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCACAAAAACTTTCAGCTAAAAACTCGAA
316 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
14321047 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATTGCTACTGG
381 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * **
14321112 CAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAAAGA
446 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
14321177 TAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGTGCACACCCCCCCCG
511 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCG
** * * **
14321242 GCCCCCCGATCGTCAAAACCCTAATGCCGCCGATCAGGTTCTCCAGCGATGCTCC-AGCGATGGT
574 GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGA-CGATGGT
** * * * * *
14321306 GCCCCGACGAAGAAAAATACGGCACCAGCAAATGCTCGAGCCCAGCATGTGCTACCACAACCCTT
638 GCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
14321371 GGTCTGGT-TCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTAT
703 GGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** *
14321435 GCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGAAGGATACGCAAG
767 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* ** * * * *
14321500 CCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCTTGCTACCGCAACCCTCGGT-CTGAT
832 CCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAG-T
14321564 CT
896 CT
* * ** * *
14321566 GATCTTAAACTGCGAAAAAACTCCGTCTGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGAGCG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCG
* *
14321631 GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
14321696 AAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACATGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
14321761 CCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * * * * *
14321826 ACATTTTGCGGTTCGGGATGTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAGCTTGCTAGA
261 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
14321891 CATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
14321956 TTTTGGGACCATTTGAAAAAATTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCA
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
** *
14322021 GTAAAATCTCAAATGCTCTTTAAGTCGGTGTGAGTTCTAGAGGTTTGATGAGGGATA-GGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
14322085 ATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTCCGCACACCCCCTGGACCCCCGATCG
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * * *
14322150 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTCCGACGATGGTGCCCCAACGAAGA
586 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* ** * * * * * *
14322215 ATAATGCAGCACCAGCACATGCCAGAGCCCAGCATGTGCTACCGCAATCTTCGGTGTGGTCCGAT
651 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
14322280 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACAC
716 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
14322345 ACGAAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGAGGATCGATCG
781 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * * * * *
14322410 GGTCCCCCTTTGCATGGTACCGATCCTACTACCGTAACCCTCGGTCCAATCC
846 GGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAGTCT
* * * * *
14322462 GACCTTAGACTGGGAATGAACTCCATATGCCTATGCTAACCGATGAAACTAGCGGGCGGGCGAGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A---------CGAGC
* * * * * * *
14322527 GGGCGGGCGGACGGGCACTATGTCGGCCAGAGAGACGAGATACGTAAGCCGTGGATCGATAGGGT
54 GGGC-GGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
14322592 GGTAGGTGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCCTGTAAAT
118 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
14322657 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACTCGTTTTGTATTTTT
183 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * *
14322722 CATTATTTTTGAAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCAC
248 CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * * *
14322787 CAAACTTGGTAGACGTGATCCTTCTATTTTTATTGGCACGCACAAAAAAATTCAGGTAAAAACTT
313 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
14322852 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTAC
378 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
14322917 TGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAC
443 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * *** *
14322982 AGATAAGGGGCTAATATAAGGGCCAACTGTTAGCACCCGTCGCACATCATGTGCGCACACCCCCT
508 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-
* * * ** * *
14323047 CGGCCCCCTCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTTTGTTGATGCTCCGGCAATG
572 CGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATG
*** * *
14323112 GTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAA-CC
636 GTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
14323176 -C--TC--G---G----T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTA
701 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
14323216 TGCCTAAGTCAACCCATGAAACGAGCGGGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATCCGCAA
766 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * * * * * * ** **
14323281 GCTGGGGATTGGTCGAGTCCCCCTCAGCGTGCTATCGATCCTGTTGCTGCAATCGTTGGT-TTGA
831 GCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAG-
14323345 TCT
895 TCT
* * * * * *
14323348 GATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAATGAGCGGACGGGAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGC
* * * * *
14323413 AGGCACTGCGTCGGCTAGAGAGACGGGATGCGCAAGTCGTGGATTGATAGGGTGGTAGGTGGGTT
65 GGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
14323478 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
14323543 CCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCGATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* **
14323608 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAA-GAGTTTTGATCCC-AACTTGGTAG
260 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14323671 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
14323736 ATTTTGTCACCATTTGAAAAAATTGTCCACATTTCAGACACTTTAATGGCTATTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
14323801 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
14323866 AATATAAAGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCGACCCCCCGATC
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
* *
14323931 GTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCTGACGATGCTCTGACGATGGTG
585 GTCGGAACCCCAATGCCGCCGGTCAGGTTCT----C--TG----G-CGATGCTCCGACGATGGTG
* * * ** *
14323996 CCCCAACGAAGGAAAATGTGGCACCAGCAC-TGCCCGAGCCCAGCATGTCCTATCGTAACCCTCG
639 CCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
14324060 GTCAGGTCTGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGC
704 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * * **
14324125 CTAAGTCAACCTACGAAATGAGCGTACAGGTGCTCAACAGGCTAGAGGCACGGGATGCGCAAGCC
769 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * ** **
14324190 GGGGATCGATTGGGTCCCCCTCTGCGTGCTGCTAATCCTGCTACCACAACCCTCAGTCCAGTCT
834 GGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAGTCT
* * * * *
14324254 GATCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAGCGAGCGGGTGGTCGGAC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGG-C
* * * *
14324319 GGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTG
61 GGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
14324384 GGTTTAGGCACATCTTCATATTTTTGCATTCGAATGCCATTTTTATGGCTTGTAAATTCAGACAA
126 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
14324449 TGGTCTCTTAAGCCCTCACGTCAAGTTTCATGGCGAGACGACTCGTTTTCTTTTTTTCATGATTT
191 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * *
14324514 TTGAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG-TTTAGCCCCAAACTTG
256 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
14324578 GTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTA
321 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
14324643 CAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGTA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
14324708 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
14324773 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGGCCCCT
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC-
* * * ** * *
14324838 CTGATCG-CTGGAACCCCAATACCGCCGGTCAAGTTCTCTGGCGATGCTCCGGTGATCGAGCCCC
579 CCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCC
** *
14324902 GGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCT
643 GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * *
14324967 GGTCTGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTTCATATGCCTAA
708 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
14325032 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATTCGCAAGCCGGGG
773 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
14325097 ATTGGCCCGGTCCCCCTCTGCATGCTACCGATCTTGCTACCGTAACCCTCGGTCCAGTCT
838 ATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAGTCT
** * * * *
14325157 GATCTTAGACCAGGAATTAACTCCGTATACCTAAGCCAATCGACGAACCGAGCGGGCAGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGC
* * * * *
14325222 GGGCACTACGTCGGCTAGAGAGGCGGGATGCGCATGCCATGGATCGGTAGGGTGGTAGGTGGGTT
65 GGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
14325287 TAGGCACATCTTCATATTTCTACCTTCCAATGCCAGTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
14325352 CCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTCGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * * * *
14325417 AACCTTTTATGGTTCGGGAGTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCTCGAACTTGGTAG
260 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
14325482 ACCTGATCCTTGTGTTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
14325547 ATTTTGTGGCCATTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14325612 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* ** *
14325677 AATATAAGGGCCAAGAACCAGCACCCATCATACATCATGTGCGCACACCCCCTGGCCCACCCGAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGAT
** * *
14325742 CGTCGGAACCAAAATGCCACCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGACGAA
584 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAA
* *
14325807 GAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--TC--G---G
649 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTG
*
14325863 -TC-----C----AAT----T-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAAC
714 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* ** * * *
14325911 CCACGAAACAAGCGTAAGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCCCAAGCCGGGGATC-GA
779 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * * *** *
14325975 CCGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCAGTAACCCTCAGTTTGGTCC
844 CGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAGTCT
* **
14326029 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAAACAACCGACGAAACGAGCGGGCGGGCAAGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGC--G-
* * * * *
14326094 GGTCCGGCACTACACCGGCCT-GAGAGACGGGATGCGCAAGCCGTGGATTGATAGGATGGTAAGT
62 GG-CGGGCACTACGCCGG-CTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
14326158 GAGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
125 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * *
14326223 ATGGTCTCTTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCGTTTTTTATTTTTCACGATT
190 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * * * * *
14326288 TTCAAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCGAACTC
255 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
14326353 GGAAGACGTGATCCTTGTATTTTTATTGGCATACACAAAAAAATTCAGCCAAAAACT-GAAAGTG
320 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTG
* * * * *
14326417 TACAAGATTTTGTCACCATTTGAAAAAAGTGTCCTCATTTTAAACACTTTAATTGCTACTGGCAG
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14326482 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGTTTTGACGAGGGATAG
449 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14326547 GGGGCCAATATAAGGGCCAAGTACCAGCAACCATTC-CACATCATGTGCACACACCCCCCGGCCC
514 GGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACACCCCCCGGCCC
* ** ** * * * *
14326611 ACCCGATCATCGGAACCAAAATGCCATCGATCAGGTTCTCTGGTGAAGCTCCGATGATGGTGCCC
578 -CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCC
* * *
14326676 TGACGAAAAAAAATGTGGCACCAGCACATGTCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
642 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*** *
14326741 CAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
707 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
** * *
14326806 AGTCAACCCACGAAATAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAG
772 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * *
14326871 GATCGGTCAGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCATAACCCTAAGTCCAGTCT
837 GATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAGTCT
* *
14326932 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGACGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGC
*
14326997 GGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTT
65 GGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
14327062 TAGGCGCATCTTCATATTTTTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
14327127 CCCTTAAGCCTTCACATGAACTTTCATGGCAAGACGACTCGTTTTCGATTTTTCACGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * *
14327192 AACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCAGCAGGAGTTTTGGCCCCAAACTTGGTAG
260 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
14327257 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCCAAAAACTCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
14327322 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATGGCTAATGGCAGCAAAGC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
** * * *
14327387 TACAAATTCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
14327452 AATATAGGGGCCAAGTATCAGCACCTATCGCACAACCTGTGCGCACACCCCCCGGCCTCCCCGAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGAT
* * * * *
14327517 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACAATGCTCCAACGATGGTGCCCCGATGAA
584 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAA
* * * * * ** *
14327582 GAAAAATGCGACACCAGCACATGCCCCAGCCCAGCATGTGCTGTCGCAACCCACGGTCCAGTCCG
649 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTG
14327647 ATCTTAGACTGGGAATGAACTCCGT
714 ATCTTAGACTGGGAATGAACTCCGT
14327672 TTCCCTAAGC
Statistics
Matches: 6059, Mismatches: 788, Indels: 293
0.85 0.11 0.04
Matches are distributed among these distances:
858 49 0.01
866 1 0.00
868 1 0.00
869 3 0.00
870 402 0.07
871 223 0.04
872 328 0.05
873 98 0.02
874 231 0.04
875 5 0.00
876 564 0.09
877 8 0.00
878 1 0.00
880 30 0.00
881 42 0.01
882 1 0.00
883 2 0.00
884 5 0.00
885 3 0.00
886 166 0.03
887 4 0.00
888 1 0.00
889 3 0.00
890 5 0.00
891 2 0.00
893 3 0.00
895 8 0.00
896 416 0.07
897 7 0.00
898 56 0.01
899 1336 0.22
900 255 0.04
901 4 0.00
902 135 0.02
903 342 0.06
904 3 0.00
905 7 0.00
906 165 0.03
907 4 0.00
908 65 0.01
909 410 0.07
910 273 0.05
911 245 0.04
912 116 0.02
913 31 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCG
GGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
GGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTCAGTCCAGTCT
Found at i:14326779 original size:26 final size:26
Alignment explanation
Indices: 14326750--14326802 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14326740 CCAATCCGAT
14326750 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14326776 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14326802 C
1 C
14326803 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14330779 original size:26 final size:26
Alignment explanation
Indices: 14330743--14330795 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14330733 CTGGTCCGAT
14330743 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
14330769 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14330795 C
1 C
14330796 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14331586 original size:26 final size:26
Alignment explanation
Indices: 14331557--14331609 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14331547 CCGGTCTGAT
* *
14331557 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14331583 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14331609 C
1 C
14331610 GTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14332316 original size:136 final size:136
Alignment explanation
Indices: 14332072--14332348 Score: 500
Period size: 136 Copynumber: 2.0 Consensus size: 136
14332062 GTTTTGGCCC
*
14332072 CAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC
1 CAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
14332137 GAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
66 GAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTAC
14332202 TGGCAG
131 TGGCAG
* *
14332208 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAAAAACTC
1 CAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
14332273 GAAGTGTACAAGATTTTGTGACCACTTGTAAAAAGTATCCCCATTTCAGACACTTTAATGGCTAC
66 GAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTAC
*
14332338 TGGTAG
131 TGGCAG
14332344 CAAAC
1 CAAAC
14332349 CTGTAAAATC
Statistics
Matches: 135, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 135 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (136 bp):
CAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTAC
TGGCAG
Found at i:14332671 original size:26 final size:26
Alignment explanation
Indices: 14332598--14332673 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
14332588 ATCTGATCTG
*
14332598 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
14332624 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
14332650 AGACTGGGAATGAACTCTGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14332674 CTAAGTTAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:14334225 original size:26 final size:26
Alignment explanation
Indices: 14334189--14334238 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14334179 GTCCGATCTT
*
14334189 AGACTAGGAATGAACTCTGTATGCTC
1 AGACTAGGAATGAACTCCGTATGCTC
*
14334215 AGACTGGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
14334239 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTC
Found at i:14335222 original size:903 final size:900
Alignment explanation
Indices: 14333471--14337827 Score: 4441
Period size: 903 Copynumber: 4.8 Consensus size: 900
14333461 GTCCAATATG
* * *
14333471 ATCTTAGACTGGGAATGAAC-TCGGTATGCCTAAGCCAACCGACGAAATGAGC--GGGCGGGCGG
1 ATCTTAGACTGGGAAAGAACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGAGCGG
* * * *
14333533 GCAGGTACTATGCCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCGTTAGGGTGCTAGGTGGG
65 GCAGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
14333598 TTTAGGCACATCATCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14333663 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
* * * *
14333728 GAAACTTTTTACGATTTGGGATTTTTT-TAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGT
260 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGTTTTTGGCCCCAAACTTGGT
*
14333792 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
14333857 AGATTTTGTGACCATTCGAAAAAACTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
14333922 CCTGTAAAATCTAAAACGCACTTTAAGCGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
* * * * *
14333987 CCAAAATAAGGGCCAAATACCAGCAGCCATCGCACATCATGTGCACACACCCCCCGACCCACCCG
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCG
* * * * ** * *
14334052 ATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAACAATGCTCCGATGATGGTGCCCTGGCG
584 ATCGCCGGAACCCCAATGACGCCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCAGACG
* * * * * *
14334117 TAGAAAAATGCAGCACGAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
649 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* * **
14334182 CGATCTTAGACTAGGAATGAACTCTGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCA
714 CGATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * **
14334247 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCACAAGTTGGGGATTC
779 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCCGGGGA-TC
* *
14334312 G-TCGGGT-CCCCTACTGTGTGCTACCT-ATCTTGCTACCGCAACCCTCGGTTCAGTCCA
843 GATCGGGTCCCCCT-CTGTGTGCTACCTGATCCTACTACCGCAACCCTC-GTTCAGTCCA
14334369 ATCTTAGACTGGGAAAGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGGCGAGCG
1 ATCTTAGACTGGGAAAGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGC--GGGGGCGAGCG
*
14334434 GGCAGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
64 GGCAGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
** *
14334499 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATT
129 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
14334564 GGTCCCTTAAGCCTTCACGGGAAGTTTGATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * *
14334629 TTAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGGTTTTTGGCCCCAAACTTGG
259 CGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGTTTTTGGCCCCAAACTTGG
* * * *
14334694 TAGACATGGTCCTTG-ATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
324 TAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
14334758 CAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
14334823 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGGA
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-
* * * * *
14334888 GGCCAATATAAGGGCCAAGTACCAACACCCATCGCACACCATGTGTGCACACCCTCCGGCCCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCC
* * * * * * * * *
14334953 CGATCACCGTAACGCCAATGTCGCCGGTCAAGTTCTCCGACGATGCTCAGGCGATGGTGACCAGG
582 CGATCGCCGGAACCCCAATGACGCCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCAGA
* * * *
14335018 CGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTACTACCACAACCCTCAGTCTGG
647 CGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* *
14335083 TCCAATCTTAGACTGGGAATGAACTCCATATGCTTTGACTGGGAATGAACTCCGTATGCCTAAGT
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * * * *
14335148 CAACCCACAAAACGAGCGTGCGGGCGCTTAACCGGTTAGAGGGGCGGGATGCGCAAGCTGGGGAA
777 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCCGGGGAT
* * *
14335213 CGATCGGGTCCCCCTCTGTGTGCTA-CTGAACCTACTACCGCAACCCTCGGTCCAGTCTA
842 CGATCGGGTCCCCCTCTGTGTGCTACCTGATCCTACTACCGCAACCCTC-GTTCAGTCCA
*
14335272 ATCTTAGATTGGGAATGAGCTCTGTATGGTTAGACCGAGAATGAACTCCGTATGCCTAAGCCAAC
1 ATC-----TT----A-GA---C----T-G---G---GA-AA-GAACTTCGTATGCCTAAGCCAAC
* * * * * * *
14335337 CGACGAAATGAGC--GGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGGGCAAGCC
40 CGACGAAACGAGCGGGGGCGAGCGGGCAGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCC
*
14335400 GTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
105 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * * **
14335465 TTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCGTCCACGTGAAGTTTCATGGCAAGATTAC
170 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
14335530 TCGTTTTCTATTTTTCATGATTTTCGACACTTTTTACGGTTCGGAATATTTTAAAATTTTTTCAG
235 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
14335595 AAGGAG-TTTTGGCCCCAAAATTAGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACA
300 AAGG-GTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-A
* *
14335659 AA-TCAGCGAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCA
363 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
**
14335723 GACACTTTAATGGCTACAAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
428 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
14335788 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCTATCACACATC
493 TCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* **
14335853 ATGTGCGCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGACGCCAGTCAGGTTCTCTT
557 ATGTGCGCACA-CCCCCCGACCCCCCCGATCGCCGGAACCCCAATGACGCCGGTCAGGTTCTCCA
* * * *
14335918 GCGATGCTCTGGCAATGGTGCCTCA-ACGAAGAAAAATACGGCACCAGCACATGGCC-GAGCCCA
621 ACGATGCTCCGGCGATGGTGCC-CAGACGAAGAAAAATGCGGCACCAGCACAT-GCCTGAGCCCA
** * *
14335981 GCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATGTTAGACTGGGAATGAACTCTGTATGC----
684 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTTG
* * * * **** * * * * * *
14336042 -CT---AA-GCCAA--CCG-A---CGAAATGAGCGGGTG-GACGGGCGGGAGGGCACT-ATGCCG
749 ACTGGGAATG--AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACCG
* * * * ** ** * * *
14336094 GCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGT---GGTAGGTG-GGT---TTATGC-
811 GCCAAAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCTGATCCT
** *** * *
14336151 AC-ATCTTCATATTTTCATGTGCAAATGCCA
876 ACTA-CCGCA-ACCCTC--GTTC-AGT-CCA
* * * * * * * * * ** ** **
14336181 TTTTTATGGCTTGTAAATTCATACAAT-G-GTCCCTTAAGCC-TTC-ACTTG-AA-GTTTC-ATG
1 ATCTTA-GACTGGGAAA--GA-AC-TTCGTATGCC-TAAGCCAACCGAC--GAAACG-AGCGGGG
* ** ** * * * ** * * * **** **
14336239 GCAAGACGACTCATTTTCTATTTTTCACGATTTTCA-AAACATTTTGCGGCT-CG-AAATTTTTT
57 GCGAG-CG-GGCA--GGC-ACTATGC-CG---GCCAGAGAGA---TG-GGATGCGCAAGCCGTGG
** **** * * * ** * * * * * ** *
14336301 A-AAATTTTTTCGAAAG-GATTTTTGGC-C--C--CAAACCTTGTAGACGTGATCGTTG-TATTT
109 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCT-G-CGTG-CCAATGCCA-TT
* * * * * * *
14336358 TTTTTGGCATGCACAAAAAATTGACACAATTGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAA
169 TTTATGGCTTG-----TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
*
14336423 GACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTT
229 GACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * *
14336488 TTTCGGATGGG-TTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGCCATGCACA
294 TTTCGGAAGGGTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
14336552 AAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
359 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14336617 TTCGGACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
424 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
14336682 GAGTTCTCGAGGTTTGATGAGAGATAGCGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGTA
489 GAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
14336747 CAT-ATTGTGCG--CA-----C-ACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTC
553 CATCA-TGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCAATGACGCCGGTCAGGTTC
* ** * *
14336803 TCCAACGATGCTCCGGTGACAGTGCCTC-GATGAAGAAAAATGCGGCACCAGTACATG-CTCGAG
617 TCCAACGATGCTCCGGCGATGGTGCC-CAGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAG
* * *
14336866 CCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
680 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
14336931 -TT-ACATAGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAA
745 TTTGAC-T-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * ** ** **
14336994 CCGACCAGTGGGGCGGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCT-GTTGAT
808 CCGGCCAAAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCTGAT
* * * **
14337058 CCTACTGCCGCAACCCTCATTCGGTCTG
873 CCTACTACCGCAACCCTCGTTCAGTCCA
* * * * *
14337086 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAACGAGC--GGGCGGGCAGG
1 ATCTTAGACTGGGAAAGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGAGCGGG
* * * * * * *
14337149 CAGGCACTACGTCAGCCAGGGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGAAGGTGGGT
66 CAGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
14337214 TTAGGCATATCTTCATATTTCTGTGTGCCAAGGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
14337279 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATGTT-G
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
* * *
14337343 AAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT-GCCCCAAACTTGG
261 -AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-GTTTTTGGCCCCAAACTTGG
* * * *
14337407 TAGACGTCATCCTTGTATTTTTGGTGCCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
14337472 AAGATTTTGTTACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
14337537 A-CTCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
454 ACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
14337601 GCCAATATAATGGCCAAGTACCAGCACCCATCGCATATCATTTGCGCACACCCCCTCG-GCCCTC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGACCCCCC
* * * *
14337665 CGATCGCCAGAACCCCAATGACGCCGGTCAGGTTCTCCTACGATGCTCCGGCAATGGTGGCTC-G
582 CGATCGCCGGAACCCCAATGACGCCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGT-GCCCAG
** * *
14337729 ACGAAGAAAAATATGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCT
646 ACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* *
14337793 GGTCCAATGTTAGACTGGGAATGAACTCCGTATGC
710 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14337828 CTAAGCCAAC
Statistics
Matches: 2827, Mismatches: 486, Indels: 293
0.78 0.13 0.08
Matches are distributed among these distances:
885 5 0.00
886 10 0.00
887 15 0.01
888 4 0.00
889 302 0.11
890 199 0.07
891 14 0.00
892 16 0.01
893 17 0.01
894 28 0.01
895 15 0.01
896 15 0.01
897 162 0.06
898 290 0.10
899 117 0.04
900 5 0.00
901 14 0.00
902 236 0.08
903 575 0.20
904 15 0.01
905 10 0.00
906 9 0.00
907 7 0.00
908 6 0.00
909 14 0.00
910 5 0.00
911 1 0.00
912 47 0.02
913 8 0.00
916 2 0.00
917 4 0.00
918 2 0.00
919 2 0.00
920 1 0.00
921 3 0.00
924 1 0.00
925 457 0.16
926 151 0.05
927 7 0.00
928 2 0.00
929 34 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (900 bp):
ATCTTAGACTGGGAAAGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGAGCGGG
CAGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGTTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGAT
CGCCGGAACCCCAATGACGCCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCAGACGAA
GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCCGGGGATCGAT
CGGGTCCCCCTCTGTGTGCTACCTGATCCTACTACCGCAACCCTCGTTCAGTCCA
Found at i:14336559 original size:180 final size:180
Alignment explanation
Indices: 14336203--14336556 Score: 523
Period size: 180 Copynumber: 2.0 Consensus size: 180
14336193 GTAAATTCAT
* *
14336203 ACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
1 ACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
** * *
14336268 ATTTTCAAAACATTTTGCGGCTCGAAATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAA
66 ATTTTCAAAACATTTTAAGGCTCGAAATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAA
* *
14336333 CCTTGTAGACGTGATCGTTGTATTTTTTTTGGCATGCACAAAAAATTGAC
131 CCTTGTAGACGTGATCCTTGTATTTTTTTTGCCATGCACAAAAAATTGAC
* * *
14336383 ACAATTGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
1 ACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
* * * ** * *
14336448 ATTTTCGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGATGG-GTTTTAGCCCCAAA
66 ATTTTCAAAACATTTTAAGGCTCGAAATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAA
14336512 -CTTGGTAGACGTGATCCTTGTATTTTTTTTGCCATGCACAAAAAA
131 CCTT-GTAGACGTGATCCTTGTATTTTTTTTGCCATGCACAAAAAA
14336557 ATTCAGCTAA
Statistics
Matches: 155, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
178 3 0.02
179 51 0.33
180 101 0.65
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.38
Consensus pattern (180 bp):
ACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
ATTTTCAAAACATTTTAAGGCTCGAAATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAA
CCTTGTAGACGTGATCCTTGTATTTTTTTTGCCATGCACAAAAAATTGAC
Found at i:14340879 original size:26 final size:26
Alignment explanation
Indices: 14340844--14340900 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
14340834 CGGTCTAGTC
14340844 GTAT-CTTAGACTGGGAATGAACTCT
1 GTATGCTTAGACTGGGAATGAACTCT
*
14340869 GTATGCTTAGACTGGGAATGATCTCT
1 GTATGCTTAGACTGGGAATGAACTCT
14340895 GTATGC
1 GTATGC
14340901 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (26 bp):
GTATGCTTAGACTGGGAATGAACTCT
Found at i:14342302 original size:705 final size:707
Alignment explanation
Indices: 14338762--14342309 Score: 4582
Period size: 705 Copynumber: 5.0 Consensus size: 707
14338752 GACGAAACGA
* * *
14338762 GCGGGCGGGCACTACGCCGGCGAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* **
14338827 TGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
14338892 AATTGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * *
14338957 TTTGGAAACTTTTTGGGGTT-G-GATTTTTTAAAA-TATTTCAGGAAGGAGTTTTGGCCCCAAAC
196 TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAAC
* * *
14339019 TTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAGGT
260 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
14339084 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
325 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
14339149 GCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACA
390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA
* * * * *
14339214 GGGGGCCAGTGTAAGGGCCAAGTACTAGCACCAATCGCACATCATGTGCGCACACCCCCC-CCG-
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGC
* *
14339277 CCCCCTATCG-CAGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGATCCGGTGATGGTGC
520 CCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCT-C--CG--G---C---GATGGTGC
** * * * ** **
14339341 CCTGGTGAAGAAAAATGTGGCACCAGCACATGCCAGAGCCCAGCATGTCCTGTTGCAACCCTTGG
573 CC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG
** * * * *
14339406 TCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAATGAGCAGGC
637 TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACAGGC
**
14339471 GGGTGG
702 GGGCAG
* * *
14339477 GCGGGCGAGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* **
14339542 TGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14339607 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * ***
14339672 TTTCCAAATTTTTTTACGGTTCGATATTTTTTAAAATTTTTTCGGGAAGGAGTTTTGATGCCAAA
196 TTT-CAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAA
* * * * *
14339737 CTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTCAAAACTCAAAG
259 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
14339802 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
324 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14339867 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTGGAGGTTTGATGAGGGAC
389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGAT
* * *
14339932 AGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCATGTGGGCACAACCCCCCTTG
454 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCTCG
* *
14339997 GCCCCCCTGATC-TCCGGAACCCCAATGCCGCCGGACAGATTCTCCGACGATGCACCAGGGATGG
518 GCCCCCC-GATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCT-C--CG--G---C---GATGG
* *
14340061 TGCCCGGACGAAGAAAAATGTC-GCACTAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
570 TGCCC-GACGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * ** *
14340125 TCGGTCTGGTCCAATCATAGACTGGGAATGAACTCTGTATGCCTAAGCCAA-C--CG--ACGAA-
633 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAAC
14340184 A--C--G-A-
698 AGGCGGGCAG
* * * *
14340188 GCGGGCGGGCTCTACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTATG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
14340253 TGGGTTTAGGCACA-CTTTCATATTTCTGTGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATA
66 TGGGTTTAGGCACATC-TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14340317 CAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGA
130 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * * * *
14340382 TTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTTGGCAGGAGTTTTGGCCCCAAAC
195 TTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
*
14340447 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGT
260 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
14340512 GTACAAGATTTTCTGACCATTTGAAATAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
325 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14340577 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA
390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA
* *
14340642 GGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACAGCATGTGCGCACACCCCCCTCGGC
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGC
*
14340707 CCCCCAGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGTTGGTGC
520 CCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA-----------TGGTG-
* * *
14340772 CCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGG
572 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--
*
14340837 TCTAGTCGTATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGATCTCTGTATGCC
633 TC-A---G--TC-----C---G---G---TCTG-AT-CTTAGACTGGGAATGAACTCTGTATGCC
* * * * *
14340902 TAAGTCAACCCACGAAACGAGCGGGCAGGCAG
676 TAAGCCAACCGACGAAACGAACAGGCGGGCAG
** *
14340934 GCGGGCGGGCACTAC-TTGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *** *
14340998 TGGGTTTAGGCACATCTTCATATTTTTCCATGCCAATGCCATTTTTATGGCTTGAAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14341063 AATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * ** **
14341128 TTTCCAAACTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTCAGAAGTTGTTTTGGTTCCAAACT
196 TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
14341193 T-GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTG
261 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
14341257 TACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCGATTTCAGACACTTTAATGGCTACTGGCAG
326 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14341322 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAG
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAG
* * * *
14341387 GGGGCCAATATAAGGGCCAAGCACCAGCACCCACCACACA-GAGTGTGCGCACA-CCCCCTCCGC
456 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-TGTGCGCACACCCCCCT-CG-
* * * * * * * * *
14341450 CCCCCCCAATCG-CTGGAACCCTAATGCAGTCGGTCAGGTTCTCCGACGACGCT-CCAG-CGAAG
518 GCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCGACGAAG
* * *
14341512 AAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCAGTCCGGTCCGA
582 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCTGA
* * * *
14341577 TCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGATGAAATGAACAGGCGGGCAG
647 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCAG
** *
14341638 GCGAACGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
14341703 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
14341768 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
14341833 TTTTAAAAATTTTTGCGGTTCGACATTTTTTAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACT
196 TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* ** *
14341898 TGGTAGATGTGATCCCCGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTG
261 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
14341963 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCT-TTGGCAG
326 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14342027 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGTTTTGATAAGGGATA-
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAG
14342091 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCC
456 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCC
* * * *
14342156 CCCCGATCGTCGGAACCCCAATGTCGCTGGTCATGTTCTCCGGCGATGGTGCCCTACGAAGAAAA
521 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCGACGAAGAAAA
* * * * *
14342221 ATGCGGCACCAGCACATGTCGGAGCCTAGCATATGCTGCCGTAACCCTCAGTCCGGTCTGATCTT
586 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCTGATCTT
14342286 AGACTGGGAATGAACTCTGTATGC
651 AGACTGGGAATGAACTCTGTATGC
14342310 TTAGACTGGG
Statistics
Matches: 2487, Mismatches: 270, Indels: 162
0.85 0.09 0.06
Matches are distributed among these distances:
697 2 0.00
700 1 0.00
703 41 0.02
704 115 0.05
705 389 0.16
706 113 0.05
707 2 0.00
708 102 0.04
709 257 0.10
710 31 0.01
711 181 0.07
712 3 0.00
713 1 0.00
715 187 0.08
716 12 0.00
717 2 0.00
718 16 0.01
719 254 0.10
720 11 0.00
721 1 0.00
722 7 0.00
723 142 0.06
724 1 0.00
725 1 0.00
726 3 0.00
728 1 0.00
729 3 0.00
730 48 0.02
731 3 0.00
732 2 0.00
733 4 0.00
734 33 0.01
735 1 0.00
737 2 0.00
739 4 0.00
742 1 0.00
743 8 0.00
744 264 0.11
745 223 0.09
746 15 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (707 bp):
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCC
CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCTGATCTT
AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCAG
Found at i:14342312 original size:26 final size:26
Alignment explanation
Indices: 14342283--14342335 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14342273 CCGGTCTGAT
*
14342283 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14342309 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14342335 C
1 C
14342336 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14343938 original size:26 final size:26
Alignment explanation
Indices: 14343906--14343978 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
14343896 ATCTTAGACT
*
14343906 GGAATGAACTCTGTATGCCTAAACTG
1 GGAATGAACTCCGTATGCCTAAACTG
14343932 GGAATGAACTCCGTATGCCTAAACTG
1 GGAATGAACTCCGTATGCCTAAACTG
*
14343958 GGAATAAACTCCGTATGCCTA
1 GGAATGAACTCCGTATGCCTA
14343979 GGTCAACCCA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCCTAAACTG
Found at i:14345801 original size:718 final size:716
Alignment explanation
Indices: 14344065--14346260 Score: 3146
Period size: 718 Copynumber: 3.1 Consensus size: 716
14344055 TCCCCATCTG
* * * * * * * * * **
14344065 TGTGCTGTCACAACCCTCGGTCTGATCCAATCTTAGATTGGGAATGAACTTCATATGCTTAGGAA
1 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * * * * *** * * *
14344130 AACCGACAAAACGAGCTGGCAGGCAGGCTACCGGGCACTACGTCAGCCAGAGAGACGGGATGTGC
66 AACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
**
14344195 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAACACATCTTCATATTTCTGTGTGCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
*
14344260 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** *
14344325 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGATTGACATTTTTTTAAATTTT
260 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
* * * *
14344390 TTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTGTGTTGGCATGCATAA
325 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * *
14344455 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCTCATT
390 AAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14344520 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
455 TCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14344585 AGTTCTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
520 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14344650 ATCATGTGCGCAAACCACCCCCCTGGCCCCCTCGATCGCCAGAAACCGATGCCGCCGGTCAGGTT
585 ATCATGTGCGC--A-CACCCCCCCGGCCCCCTCGATCGCCGGAACCCAATGCCGCCGGTCAGGTT
* * * * * * *
14344715 CTCCGCCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCAAATGCCCGAGC
647 CTCAG-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTAACACCAGCACATGCTCGAGC
14344780 CCAGCA
711 CCAGCA
* *
14344786 TGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
1 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* ** * * *
14344851 AACCGATGAAATGAGCGGGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGATAGACGGGATGCGC
66 AACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
14344916 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTATGTGCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
*
14344981 CATTTTTATGGCTTCTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGTCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
14345046 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
260 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
*
14345111 TTCGGAA-GACGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
325 TTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * *
14345175 AAAAAAATCAACTAAAAACTCTAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCAT
389 AAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14345240 TTCAGACACTTTAAAGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
454 TTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
14345305 GAGTTCTCGAGGTTTGATGAGGGACAGGGGCCCAATATAAGGGCCAAGTATCAGCACCCATCGCA
519 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
14345370 TATCATGTGCGCACACCCCCCCGGCCCCTTCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTC
584 CATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGCCGGAACCC-AATGCCGCCGGTCAGGTTC
* *
14345435 TCAGGGGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTAACACCAGCACATGCTCGAG-T
648 TCA-GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTAACACCAGCACATGCTCGAGCC
14345499 CAGCA
712 CAGCA
* * * * * *
14345504 TGTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGAATGGGAATGAACTCCGTCTGCCTAAGCC
1 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * * *
14345569 AACCGACGAAACAAGCGTGCGGGCGGGCGGGTGGGCATTATGCCGGCCAGAGAGACGGGATGCGC
66 AACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
** *
14345634 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCCCATATTTCTGTGTTCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
*
14345699 CAATTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGTC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
14345764 ATGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTT
260 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
* * * *
14345829 TTTGGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCACAA
325 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
14345894 AAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
390 AAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14345959 TCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTG
455 TCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
14346024 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
520 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14346089 ATCATTTGCGCACA-CCCCCCGACCCCCT-GATCGTCGAAACCCCAAT---GCC-GTC-GG---T
585 ATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGCCGGAA-CCCAATGCCGCCGGTCAGGTTCT
* * * *
14346144 CA-TG-TTCTCCGGCGATGGTGCCCCCACGAAGAAAAAT-TCGACACCAGCACATG-TCGGAGCC
649 CAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGT-AACACCAGCACATGCTC-GAGCC
14346205 CAGCA
712 CAGCA
* * *
14346210 TATGCTGCCGCAACCCTCGGTCCGGTCCGATTTTGGACTGGGAATGAACTC
1 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
14346261 TGTATGCTTA
Statistics
Matches: 1332, Mismatches: 133, Indels: 35
0.89 0.09 0.02
Matches are distributed among these distances:
704 3 0.00
705 47 0.04
706 50 0.04
708 3 0.00
711 2 0.00
712 3 0.00
713 3 0.00
716 12 0.01
717 15 0.01
718 579 0.43
719 75 0.06
720 5 0.00
721 535 0.40
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (716 bp):
TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
AACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCCGGCCCCCTCGATCGCCGGAACCCAATGCCGCCGGTCAGGTTCTCA
GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTAACACCAGCACATGCTCGAGCCCAGC
A
Found at i:14346823 original size:891 final size:891
Alignment explanation
Indices: 14345506--14347151 Score: 2589
Period size: 891 Copynumber: 1.8 Consensus size: 891
14345496 AGTCAGCATG
* *
14345506 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGAATGGGAATGAACTCCGTCTGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
14345571 CCGACGAAACAAGCGTGCGGGCGGGCGGGTGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACAAGCGGGCGGGCAGGCGAGCGGGCACTACGCCGGCCAGAAAGACGAGATGCGCAA
*
14345636 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCCCATATTTCTGTGTTCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCACCATATTTCTGTGTTCCAATGCCA
*
14345701 ATTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
196 ATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* * *
14345766 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTC
* * * * *
14345831 TGGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCACAAAA
326 TGGAAGGAGTTTTGGACCCAAACCTGGCAGACATGATCCTTGTATTTTTTTTGTCATGCACAAAA
*
14345896 AAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
* *
14345961 AGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAG
456 AGACACTTTAAAGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
14346026 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
521 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
14346091 CATTTGCGCACACCCCCCGACCCCCTGATCGTCGAAACCCCAATGCCGTCGGTCATGTTCTCCGG
586 CATGTGCGCACACCCCCCGACCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * *
14346156 CGATGGTGCCCCCACGAAGAAAAATTCGACACCAGCACATGTCGGAGCCCAGCATATGCTGCCGC
651 CGATGGTGCCCCCACAAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATATGCTGCCGC
* * *
14346221 AACCCTCGGTCCGGTCCGAT-TTTGGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
716 AACCCTCGATCCGCTCCGATCTTAGG-CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
14346285 TCCGTATGCCTAAGTCTACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCTAGAGGGGCAGGAT
780 TCCGTATGCCTAAGTCTACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCTAGAGGGGCAGGAT
14346350 GCACAAGCCGGGGATTGACTCGGTCCCACTCTGCGTGCTGTCGATCT
845 GCACAAGCCGGGGATTGACTCGGTCCCACTCTGCGTGCTGTCGATCT
* * * * * *
14346397 TGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14346462 TCGATGAAACGAGCGGGCGGGCAGGCGAGCGGGTACTACGCCGGCCAGAAAGATGAGATTCGTAA
66 CCGACGAAACAAGCGGGCGGGCAGGCGAGCGGGCACTACGCCGGCCAGAAAGACGAGATGCGCAA
* *
14346527 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCATCATATTTCTGTGTGT-CAATGCC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCACCATATTTCTGTGT-TCCAATGCC
* *
14346591 ATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 AATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** *
14346656 TGACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTGTAGTTCGGGATTTTTTAAAATTTTT
260 TGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTT
14346721 CTGGAAGGAGTTTTGGACCCAAACCTGGCAGACATGATCCTTGTATTTTTTTTGGT-ATGCAC-A
325 CTGGAAGGAGTTTTGGACCCAAACCTGGCAGACATGATCCTTGTATTTTTTTT-GTCATGCACAA
*
14346784 AAAAATGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
389 AAAAAT-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAT
* *
14346849 TTCAGGCACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
453 TTCAGACACTTTAAAGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
14346914 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATTACCAGCACGCATCGCA
518 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
14346979 CATCGTGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTTAGGTTCTC
583 CATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTC
** * *
14347044 CGGCGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
648 CGGCGATGGTGCCCCCACAAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATATGCTGC
14347109 CGCAACCCTCGATCCGCTCCGATCTTAGGCTGGGAATGAACTC
713 CGCAACCCTCGATCCGCTCCGATCTTAGGCTGGGAATGAACTC
14347152 CGCATGCCTA
Statistics
Matches: 680, Mismatches: 71, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
890 7 0.01
891 666 0.98
892 7 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (891 bp):
TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGGCGGGCAGGCGAGCGGGCACTACGCCGGCCAGAAAGACGAGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCACCATATTTCTGTGTTCCAATGCCA
ATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTC
TGGAAGGAGTTTTGGACCCAAACCTGGCAGACATGATCCTTGTATTTTTTTTGTCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
AGACACTTTAAAGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGACCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGG
CGATGGTGCCCCCACAAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATATGCTGCCGC
AACCCTCGATCCGCTCCGATCTTAGGCTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCTACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCTAGAGGGGCAGGATG
CACAAGCCGGGGATTGACTCGGTCCCACTCTGCGTGCTGTCGATCT
Found at i:14350262 original size:898 final size:919
Alignment explanation
Indices: 14347131--14350551 Score: 3532
Period size: 898 Copynumber: 3.8 Consensus size: 919
14347121 TCCGCTCCGA
* * * *
14347131 TCTTAGGCTGGGAATGAACTCCGCAT-GCCTAAG-CCAACCGATGAAACGAGCGGG-CGGGCGGG
1 TCTTAGACT-GGAATGAACTCCGTATGGCCTAAGCCCAACCGACG-AACGAGCGGGTTGGGCGGG
* ** * *
14347193 CAG--GTACTATGCCGACCAAAGAGACAGGAT-GCGCAAGCCGTGGATCGA-TAGGGTGGTAGGT
64 CAGCAGCACTACACCGACCAGAGAGACGGGATGGCGCAAGCCGTGGATCGATTAGGGTGGTAGGT
*
14347254 GGGTTTAGGCACATCTTCATATTT-CT--ATGTGCCAATGCCATTTTTATGGCTTGTAAA-TTCA
129 GGGTTTAGGCACATCTTCATATTTCCTGCA-ATGCCAATGCCATTTTTATGGCTTGTAAATTTCA
* * * * *
14347315 TACAATGGT-C-CCTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTC-GTTTTCTATTTT
193 TACAACGGTCCACCTTAAGACTTCACATGAAGTTTCATTGGCAAGACGACTCAGTTTTTTATTTC
* * *
14347376 TC-ATGATTTTTGAAACTTTTT-ACGGT-TCAAGATTTTTTAAAAATT-TTTT-GAAAGGAGTTT
258 ACAAT--TTTTTAAAACTTTTTAACGGTCTCGAGATTTTTT-AAAATTCTTTTGGAAA-GAGTTT
* * * ** * * *
14347436 TGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAGTCAGCTAA
319 TAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTCATCGGCATGCACAAAAAAATTCAACTAA
* * * *
14347500 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAA
384 AAACTCGAAGTGTACAAGATTTTGCGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
14347565 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTT
449 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGCTT
*
14347630 GATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
514 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * * *
14347695 CCCC-TCGGCTCCCCCGATCGTCGAAACCCAAATGCCACCGGTCGGGTTCTCTGGTGATGCTCCG
579 CCCCATCGGCCCCCCCGATCGCCGAAACCCCAATACCATCGGTCAGGTTCTCCGGCGATGCTCCG
* * * * * * * ***
14347759 ACGATGGTGCCCCAACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAACATGTGCTATTG
644 ACGACGGTGCCCCGATGAAGAAAAATACAGCA-CAGCACATGCCCAAGCCCAGCATGTGCTGCCG
* * * ** * * ** * * *
14347824 TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAATTCCATATGCTTAGACT-AGGAATGAA
708 CAACCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCTGTATACTTAAACTGA-GAATAAA
* * ** * ** * *
14347888 CTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGA
772 CTCCGTATGCCTAAGTCAAACCACGAAACAAGCGTGCGGGCGCTCAACCGACCAGAGGGGAGGGA
* * * * ** * *
14347953 TGC-ACAAGCCGAGGA-CCGAACGGGTCCCCGTCTGTGTGCTGC--CGATC-CTGCTGCTG-TAA
837 TGCGGCAAGCCGAGGATTCGATCGGGTCCCCCT-TGCATGCT-CATCGAGCACTGCTGC-GCAAA
* *
14348012 CCCTTG--GTTCG-AT-CTGA-
899 CCC-TGCAATCCGAATCCTGAT
* *
14348029 TCTTAGACTGGGAATGAACTCCGTAT-GCCTAAG-CCAACCGACGAAACGAGC-GGTAGGGCAGG
1 TCTTAGACT-GGAATGAACTCCGTATGGCCTAAGCCCAACCGACG-AACGAGCGGGTTGGGCGGG
* ** ** * * * * *
14348091 CAGGCGGGCACTACGTCGGTCAGAGAGACAGG-TTGCACAAGTCATGGATCGA-TAGGGTGGTAG
64 CA-GC-AGCACTACACCGACCAGAGAGACGGGATGGCGCAAGCCGTGGATCGATTAGGGTGGTAG
*
14348154 GTGGGTTT-GAGCACATCTTCATA-TTACTGC-ATGCCAATGCCATTTTTATGGCTTGTAAA-TT
127 GTGGGTTTAG-GCACATCTTCATATTTCCTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTT
* * * * * *
14348215 CATAAAATGGT-C-CCTTAAGCCTTCACGTGAAGTTTCA-TGGGAAGACGACTC-GTTTTCTATT
191 CATACAACGGTCCACCTTAAGACTTCACATGAAGTTTCATTGGCAAGACGACTCAGTTTT-T-TA
* * * * **
14348276 TTTCACGA-TTTTCAAAACTTTTT-GCGGT-TC-AGGATTTTTTAAAATT-TTTTCGTATGGAGT
254 TTTCACAATTTTTTAAAACTTTTTAACGGTCTCGA-GATTTTTTAAAATTCTTTT-GGAAAGAGT
* * ** * *
14348336 TTTGGCCCCAAATTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
317 TTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTCATCGGCATGCACAAAAAAATTCAACT
* * * * * *
14348401 AAAAACTGGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTA
382 AAAAACTCGAAGTGTACAAGATTTTGCGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
14348466 ATGGTTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCAT-GATG
447 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC-TCAAGG
* * * * * *
14348530 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCACCACGCATCATTTGCGC
511 CTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * * *
14348595 ACACCCC-CCGACCCCCCCGATTGCCGAAA-CCCGATGCCGTCAGTCAGGTTCTTCGGCGA---T
576 ACACCCCATCGGCCCCCCCGATCGCCGAAACCCCAATACCATCGGTCAGGTTCTCCGGCGATGCT
* * ** * * *
14348655 --------GGTGCCCTGACGAA-AAAAA-AGTGGCACCAGCACATGCTCGAGCACAGCATGTGCT
641 CCGACGACGGTGCCCCGATGAAGAAAAATA-CAGCA-CAGCACATGCCCAAGCCCAGCATGTGCT
* *
14348710 GCCACAACCCTC-G---G-T-C---C--------GG--T---C-C-G-AT-CTTAGACTGAGAAT
704 GCCGCAACCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCTGTATACTTAAACTGAGAAT
* *
14348749 GAACTCCGTATGCCTAAGTCAAACCACGAAACAAGCGTGTGGGCGCTCAACCGACCAGAGGGGCA
769 AAACTCCGTATGCCTAAGTCAAACCACGAAACAAGCGTGCGGGCGCTCAACCGACCAGAGGGG-A
* * *
14348814 GGTATGCGGCAAGCCGAGGATTCGATCGGGTCCCCCTTGCATGCTCGTCGAGCATTGCTGCGCAA
833 GGGATGCGGCAAGCCGAGGATTCGATCGGGTCCCCCTTGCATGCTCATCGAGCACTGCTGCGCAA
**
14348879 ACCCTGCGGTCCGAATCCTGAT
898 ACCCTGCAATCCGAATCCTGAT
*
14348901 TCTTAGACTGGTATGAACTCCGTATGGCCTAAGCCCAACCGACGAACGAGCGGGTTGGGCGGGCA
1 TCTTAGACTGGAATGAACTCCGTATGGCCTAAGCCCAACCGACGAACGAGCGGGTTGGGCGGGCA
* * **
14348966 GCGGCACTACACGGGGCAGAGAGACGGGATGGCGCAAGCCGTGGATCGATTAGGGTGGTAGGTGG
66 GCAGCACTACACCGACCAGAGAGACGGGATGGCGCAAGCCGTGGATCGATTAGGGTGGTAGGTGG
14349031 GTTTAGGCACATCTTCATATTTCCTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTTCATAC
131 GTTTAGGCACATCTTCATATTTCCTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTTCATAC
* *
14349096 AACGGTCCACCTTGAGACTTCACATGAAGTTTCATTGGCAAGATGACTCAGTTTTTTATTTCACA
196 AACGGTCCACCTTAAGACTTCACATGAAGTTTCATTGGCAAGACGACTCAGTTTTTTATTTCACA
* * *
14349161 ATTTTTTAAAACTTTTTAACGGTTTCGGGATTTTTTAAAATTCTTTTGGAAAGATTTTTAGCCCC
261 ATTTTTTAAAACTTTTTAACGGTCTCGAGATTTTTTAAAATTCTTTTGGAAAGAGTTTTAGCCCC
* *
14349226 AAACTTGGTAGACATGATCCTTGTATTTTCATCGGCATGCCCAAAAAAATTCAGCTAAAAACTCG
326 AAACTTGGTAGACATGATCCTTGTATTTTCATCGGCATGCACAAAAAAATTCAACTAAAAACTCG
* * *
14349291 AAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
391 AAGTGTACAAGATTTTGCGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
14349356 GGCAGCAAACCTGTAAAATCTCAAATGCT-TTTCAACGG-GGTGTGAGTTCTCAAGGCTTGATGA
456 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AA-GGAGGTGTGAGTTCTCAAGGCTTGATGA
* * *
14349419 -GGATAGGGGGCCAATATAAGGGCGAAGTGCCAGCACCCATCGCACATCATGTGCGCATACCCC-
519 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCA
* * * * * *
14349482 TCCCGG-CCCCCTGATCGCCGGAACCCCAATGCCATCTGTCAGGTTCTCCGGCGATGCTCTGATG
584 T--CGGCCCCCCCGATCGCCGAAACCCCAATACCATCGGTCAGGTTCTCCGGCGATGCTCCGACG
* * *
14349546 ATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAT
647 ACGGTGCCCCGATGAAGAAAAATACAGCA-CAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
* * *
14349611 CCCTCGGTCCGATCTAATCTTAGATTGGGAATGAACTCTGTATACTTAAACTGGGAATAAACTCT
711 CCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCTGTATACTTAAACTGAGAATAAACTCC
* * * **
14349676 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGTCGACCAGAGGGG-GGGATGC-
776 GTATGCCTAAGTCAAACCACGAAACAAGCGTGCGGGCGCTCAACCGACCAGAGGGGAGGGATGCG
* * ** *
14349739 GCAAGTCGGGGA-TCGATCGGGTCCCCCTTTGTGTGCT-ATCGATC-CTGCTGCCGC-AACCCT-
841 GCAAGCCGAGGATTCGATCGGGTCCCCC-TTGCATGCTCATCGAGCACTGCTG-CGCAAACCCTG
*
14349799 CAATCCG-GT-CTGA-
904 CAATCCGAATCCTGAT
14349812 TCTTAGACTGGGAATGAACTCCGTAT-GCCTAAG-CCAACCGACGAAACGAGCGGG-TGGGCGGG
1 TCTTAGACT-GGAATGAACTCCGTATGGCCTAAGCCCAACCGACG-AACGAGCGGGTTGGGCGGG
* *
14349874 C-G-AGCACTACACCGACCAGAGAGACGGGAT-GTGTAAGCCGTGGATCGA-TAGGGTGGTAGGT
64 CAGCAGCACTACACCGACCAGAGAGACGGGATGGCGCAAGCCGTGGATCGATTAGGGTGGTAGGT
*
14349935 GGGTTTAGGCGCATCTTCATATTT-CTGC-ATGCCAATGCCATTTTTATGGCTTGTAAA-TTCAT
129 GGGTTTAGGCACATCTTCATATTTCCTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTTCAT
* * * * **
14349997 ACAATGGT-C-CCTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTC-GTTTTCTATTTTT
194 ACAACGGTCCACCTTAAGACTTCACATGAAGTTTCATTGGCAAGACGACTCAGTTTTTTATTTCA
* * * * *
14350058 C-ATGATTTTTCAAACTTTTT-GCGG-CTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG
259 CAAT--TTTTTAAAACTTTTTAACGGTCTCGAGATTTTTTAAAATTCTTTTGGAAAGAGTTTTAG
* ** *
14350120 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAA-TCAACTAAAA
322 CCCCAAACTTGGTAGACATGATCCTTGTATTTTCATCGGCATGCACAAAAA-AATTCAACTAAAA
14350184 ACTCGAAGTGTACAAGATTTTGCGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
386 ACTCGAAGTGTACAAGATTTTGCGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
14350249 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGA
451 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGCTTGA
* *
14350314 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGTACACC
516 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* ** * * *
14350379 CCATCGGCCCCCCCGATCGTCGAAACCGTAATACCGTCGGTCAGGTTCTCTGGTGATGCTCCGAC
581 CCATCGGCCCCCCCGATCGCCGAAACCCCAATACCATCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * * * * *
14350444 GACGGTGCCCCGGTGAAGAAAAATACGGTACAGCACATGCCCGAGCCCAGCATGTGCTTCCGTAA
646 GACGGTGCCCCGATGAAGAAAAATACAGCACAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
*
14350509 CCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTAT
711 CCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCTGTAT
14350552 GCCTAAGTCA
Statistics
Matches: 2161, Mismatches: 255, Indels: 214
0.82 0.10 0.08
Matches are distributed among these distances:
864 66 0.03
865 10 0.00
866 17 0.01
867 21 0.01
868 11 0.01
869 4 0.00
870 2 0.00
871 41 0.02
872 41 0.02
873 55 0.03
874 7 0.00
875 29 0.01
876 11 0.01
877 1 0.00
878 30 0.01
879 27 0.01
880 68 0.03
881 213 0.10
882 34 0.02
885 2 0.00
886 1 0.00
889 2 0.00
890 41 0.02
891 12 0.01
893 12 0.01
894 44 0.02
895 1 0.00
897 4 0.00
898 342 0.16
899 150 0.07
900 28 0.01
901 37 0.02
902 252 0.12
903 226 0.10
904 35 0.02
905 5 0.00
906 36 0.02
907 16 0.01
908 24 0.01
909 1 0.00
910 19 0.01
911 28 0.01
912 19 0.01
913 2 0.00
914 5 0.00
915 11 0.01
916 24 0.01
917 18 0.01
918 7 0.00
919 2 0.00
920 67 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (919 bp):
TCTTAGACTGGAATGAACTCCGTATGGCCTAAGCCCAACCGACGAACGAGCGGGTTGGGCGGGCA
GCAGCACTACACCGACCAGAGAGACGGGATGGCGCAAGCCGTGGATCGATTAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCCTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTTCATAC
AACGGTCCACCTTAAGACTTCACATGAAGTTTCATTGGCAAGACGACTCAGTTTTTTATTTCACA
ATTTTTTAAAACTTTTTAACGGTCTCGAGATTTTTTAAAATTCTTTTGGAAAGAGTTTTAGCCCC
AAACTTGGTAGACATGATCCTTGTATTTTCATCGGCATGCACAAAAAAATTCAACTAAAAACTCG
AAGTGTACAAGATTTTGCGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGCTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCATC
GGCCCCCCCGATCGCCGAAACCCCAATACCATCGGTCAGGTTCTCCGGCGATGCTCCGACGACGG
TGCCCCGATGAAGAAAAATACAGCACAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCCGATCCAATCTTAGATTGGGAATGAACTCTGTATACTTAAACTGAGAATAAACTCCGTATG
CCTAAGTCAAACCACGAAACAAGCGTGCGGGCGCTCAACCGACCAGAGGGGAGGGATGCGGCAAG
CCGAGGATTCGATCGGGTCCCCCTTGCATGCTCATCGAGCACTGCTGCGCAAACCCTGCAATCCG
AATCCTGAT
Found at i:14350991 original size:25 final size:26
Alignment explanation
Indices: 14350939--14351001 Score: 87
Period size: 25 Copynumber: 2.5 Consensus size: 26
14350929 CTCGATCCAG
*
14350939 TCCG-ATG-TTAGACTGGGAATGAAT
1 TCCGTATGCTTAGACTGGGAATGAAC
14350963 TCCGTATGCTTAGACT-GGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
14350988 TCCGTATGCCTTAG
1 TCCGTATG-CTTAG
14351002 TCAACCCACG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
24 4 0.11
25 19 0.54
26 12 0.34
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:14352754 original size:26 final size:26
Alignment explanation
Indices: 14352725--14352777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14352715 CTGGTCTGAT
* *
14352725 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14352751 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14352777 C
1 C
14352778 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14354714 original size:710 final size:708
Alignment explanation
Indices: 14352908--14355064 Score: 3152
Period size: 710 Copynumber: 3.0 Consensus size: 708
14352898 GTTCGATCTA
** * *
14352908 ATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACAGACGAAACGAGCGGGCAGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGTGGGCGGGCGGGC-
14352973 GGCTATACGC-GAGCTAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTT
64 -GC--TACGCTG-GCTAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* ** *
14353037 TAGGCACATCTTCACATTTCTGTTTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGT
125 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
**
14353102 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
190 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* *
14353167 AACTTTTTGCGGTTC-ATGATTTTTTAAAATTCTTTCAGAAGGATTTTTGGCCCCAAACTTGGTA
255 AACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
14353231 GACGTGATCCCTGTATTTTTGTTGGTATGCA-AAAAAAATTCCA-TTAAAAACTCGAAGTGTACA
319 GACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATT-CAGCTAAAAACTCGAAGTGTACA
* *
14353294 AGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAA
383 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14353359 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
448 CCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
14353424 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCTCC
512 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CC
* * *
14353489 GATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
576 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCCCGAC
** * * *
14353554 GAAGAAAAATGTGGT-ACCAGCACATTCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTG
641 GAAGAAAAAT-ACGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
14353617 ATCCG
705 -TCCG
* *
14353622 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-TGAGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGTGGGCGGGCGGGCG
* * * *
14353683 CTACGTTGTCTAGAGAGACGGGATGCACATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGT
65 CTACGCTGGCTAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
14353748 GCATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
14353813 AAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
195 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * * * * *
14353877 CTTGCGGTTCGGGATTTTTTAAAATTTTGTCGGAAGGAGTTTTGGCCCCAAACTTGGTACATGTG
260 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
** *
14353942 ATCCTTGTATTTTTCCTGGAATGCACAAAAATAATTCAGCTAAAAACTCGAAGCGTACAAGATTT
325 ATCCTTGTATTTTTGTTGGAATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTT
** * * * *
14354007 TGTGACCATTTGAAAAAAGTGTCCTGATTTTAGACAATTTAATGGGTACTGGCAACAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
14354072 AAATCTCAAATGCTTTTTAAGCGAGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATA
454 AAATCTCAAATGCTTTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
14354137 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
518 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
* * * * *
14354202 GGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCAAAGCTCAGGCGATAGTGCCCCGACGAAGAAA
583 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAA
* *
14354267 AATACGTCACCAGCACACGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCG
648 AATACGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCG
*
14354328 ATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGTGGGCGGGCGGGCG
* * * * *
14354393 CTACGCTGGCCAGAGAGACGGGATGCGCAAGCTGTGAATCGATAAGGTGGTAGGTGGGTTTAGGC
65 CTACGCTGGCTAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
14354458 ACATCTTCATATTTCTGCATGCCAGTGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
14354523 AAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
195 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * * * *
14354588 TTTGTGGTTCGAGATTTTGTAAAATTTTTTCAGAACGAGTTTTGGCCGCAAACTTGGTAGAGGTG
260 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
14354653 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTT
325 ATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
14354718 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
14354783 AATCTAAAATGCTCTTTAAAGGGGTGTGA-TTCTTGAGGTTTGATGAGAGATAGGGGGCCAATAT
455 AATCTCAAATGCT-TTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* ** * * *
14354847 AAGGGCCAAGTACCAGCACCCAGCTTACATCATGTCCGCACACCCCCCAGGCCCCCCCAATCGTC
519 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTC
* **
14354912 GGAACCCCAATGCCG-CTGGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCCTGGGGAAGAA
583 GGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAA
** * * ** **
14354976 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTTTG
647 AAATACGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCG
*
14355038 ATCTTAGATTGGGAATGAACTCCGTAT
1 ATCTTAGACTGGGAATGAACTCCGTAT
14355065 CCTTAGACTG
Statistics
Matches: 1294, Mismatches: 132, Indels: 38
0.88 0.09 0.03
Matches are distributed among these distances:
705 125 0.10
706 297 0.23
707 204 0.16
708 1 0.00
709 80 0.06
710 407 0.31
711 137 0.11
713 2 0.00
714 40 0.03
715 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAGTGGGCGGGCGGGCGC
TACGCTGGCTAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
TTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTTTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGA
ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAAT
ACGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCG
Found at i:14355076 original size:26 final size:26
Alignment explanation
Indices: 14355040--14355090 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14355030 CTGGTTTGAT
*
14355040 CTTAGATTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
14355066 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14355091 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:14356869 original size:26 final size:26
Alignment explanation
Indices: 14356831--14356883 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14356821 CTGGTCCGAT
*
14356831 CTTAGAATCGGAATGAACTTCGTATG
1 CTTAGAATCGGAATGAACTCCGTATG
* *
14356857 CTTAGAATGGGAATGAAGTCCGTATG
1 CTTAGAATCGGAATGAACTCCGTATG
14356883 C
1 C
14356884 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATCGGAATGAACTCCGTATG
Found at i:14357786 original size:26 final size:26
Alignment explanation
Indices: 14357748--14357800 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14357738 CTGGTCCAAT
*
14357748 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
*
14357774 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
14357800 C
1 C
14357801 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:14358692 original size:26 final size:26
Alignment explanation
Indices: 14358652--14358704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14358642 TCGGTCCAAT
* *
14358652 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14358678 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14358704 C
1 C
14358705 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14358706 original size:904 final size:903
Alignment explanation
Indices: 14354301--14362423 Score: 9904
Period size: 902 Copynumber: 9.1 Consensus size: 903
14354291 GCCCAGCATG
* * ** *
14354301 TGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14354366 TCGACGAAACGA----GTGGGCGGGCGGGC--G--CTACGCTGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* * * *
14354423 GCTGTGAATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAGTGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
14354488 TTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** ** * *
14354553 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTGTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
14354618 C-AGAACGAGTTTTGGCCGCAAACTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAA
326 CGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
*
14354682 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14354747 CAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTAAAATGCTCTTTAAAGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * **
14354812 -TTCTTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCTTACA
519 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
14354876 TCATGTCCGCACA-CCCCCCAGGCCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT
584 TCATGTGCGCACACCCCCCCA-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
14354940 CCGGCGATGCTCCGACGATAGTGCCCTGGGGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
648 CCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *** * *
14355005 AGCATGTGCTGCCGTAACCCTCGGTCTGGTTTGATCTTAGATTGGGAATGAACTCCGTATCCTTA
713 AGCATGTGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
14355070 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACCGGC
778 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * ** *
14355135 CAAAGGGCCGGGATGTGCAAGCCGGGGATCGATGGGGTCCCCCTCCACGGGCTGCCGATCC
843 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * * *
14355196 TACTACAGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14355261 CCGACGAAACGAGCGAGCGAG-GGGCGGGCGGGCATTACGCTGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* **
14355325 GCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14355390 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGCCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** *
14355455 AATTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
14355520 CGAAAAGAGTTTTTGCCCGAAACTTGGTGGACGTGATCCTTGTATTTTTGGTGGCATGCACAAAA
326 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
* *
14355585 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14355650 AGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** * ** * *
14355715 TTCTCAAGGGTTGATGAGAAATAAGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACAT
520 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * ** *
14355780 CATGCACGCACA-CCCCCCGGCCCCCTTGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCC
585 CATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * ** * *
14355844 GACAATGCTCCGACGATGGTGCCTCGACGAAGAAAATTATGACACCAGCACATGCTCGAGCCCAG
650 GGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * * *
14355909 CATGTGTTG-TCGCAACCCTTGGTCCGGCCCGATCTTAGACTGGGAATGATCTTCGTATGCTTAG
715 CATGTGCTGCT-GCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* ** * *
14355973 ACTGGCAATGAACTCTATATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
779 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* ** * * * * *
14356038 AGAGGGGCAGGATATGCAAGCCGGGGATCCG-TAGGGTCACCTTTTACGTGCTGTCGATCC
844 AGAGGGGCGGGATGCGCAAGCCGGGGAT-CGATCGGGTCCCCTTCTGCGTGCTGCCGATCC
* **** * * * *
14356098 TGTTGTTACAACCCTTGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTGAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14356163 CCGACAAAACGAGCAGGCGGGCGGGCGAGTGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCA
* *
14356227 AGCCATGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
14356292 ATTTTTATGGCTTGCAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** * *
14356357 CGACTCATTTTTTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
14356422 TC-AGAAGGATTTTTGGCCCCAAACTTGGTAGACATGGTCCTTGTATTTTTGTTGGCATGCACAA
325 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
14356486 AACAATTCAGCTAAAAACTCAAAGTGCACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCAAT
389 AA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14356551 TCAGACACTTTAATAGCTACTGGGAGCTAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
14356616 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCAA
518 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
14356681 ATCGTGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCAGAACCCCAATACTGCCGGTCAGGTTCT
583 ATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
14356745 CCGACGA---T--G-C--T--T----CGGCAAAGAAAAATGCGACACCAGCAGATGCCCGAGCCG
648 CCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
14356796 AGCATGTGTTG-TCGCAACCCTCGGTCTGGTCCGATCTTAGAATCGGAATGAACTTCGTATGCTT
713 AGCATGTGCTGCT-GCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
14356860 AGAATGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCTGCCGG
777 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** * * * * *
14356925 CCAGAGGGGTGGGAAGCGCAAGCAAGGGATCGGTCAGGTCCCCTTCTGCATGCTGTCGATCT
842 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCGATCC
* *
14356987 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14357052 CCGACGAAACGAGCGGGTGAGCGGGCGAGCGGTCGGGCGGGCGGGCGCTATGCCGACCAGAGAGA
66 CCGACG-AA--A-C----GAGCGGGC--G-GG-CGGGCGGGCGGGCACTACGCTGGCCAGAGAGA
* *
14357117 CGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGC
119 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
14357182 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTT
184 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
14357247 TAATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTTGAGATTT
249 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGATTT
* **
14357311 TTTAAAATTTTTTCGAATGGAGTTTTGGCCCCAAACTTGGTAGACACGATCCTTGTATTTTTGTT
313 TTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
14357376 GGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAA
378 GGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
14357441 GTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTATAATCTCAAAAGCTCTTT
442 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
14357506 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
507 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * **
14357571 ACCCATCGCACAACATGTGCACACACCACCCCCACGACCCCCCCGATCACCGGAACCCCAATGCC
572 ACCCATCGCACATCATGTGCGCACACC-CCCCCA-G-CCCCCCCGATCGTCGGAACCCCAATGCC
* * * *
14357636 GTCGGTCAGGTTCTCCGACGATGCTCCGACGACGGTGCCCCAGCGAAGAAAAATGCGGCACCAGC
634 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
* * *
14357701 ACATGCCCGAGCCCAGCAAGTGCT-C-GTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATCA
699 ACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGA
* * * *
14357764 ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCA
764 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
14357829 GGCGCCCAGCCTGCCAAAGGGGCGGGATGCACAAGCCGGGGATCGATTGGGTCCCCTTCTACGTG
829 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTG
14357894 CTGCCGATCC
894 CTGCCGATCC
* * * *
14357904 TGCTATCGCAACACTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14357969 CCGACGAAATGAGCGGGCGGGCGGGCGGGCGAGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* * * *
14358034 GCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGTACATCTTCATATTTCTGCATTCCAATACCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
14358099 ATTTTATGGCTTGTAAATTCATACAATCGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
14358164 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
*
14358229 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
326 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14358294 AATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
391 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14358359 GGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
456 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14358424 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTCCCAGCACCCATCACACATC
521 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
14358489 ATGTAG-GCACACCCCCTCCCAGCCCCCTCGATCG-CTGGAACCCCAATACCGCCAGTCAGGTTC
586 ATGT-GCGCACA-CCCC-CCCAGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
14358552 TCAGGCGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAAT-CGGCACCAGCACATGCCTGAGCC
647 TCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
14358616 CAACATGTGCTGCTGCAACCCTCAGT-TCGGTCCAATCTTAGACTGGTAATGAACTCCGTATGCT
712 CAGCATGTGCTGCTGCAACCCTCGGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCT
* ** * *
14358680 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACTAACGAAACGAGCGTACGGGCGCGCAGCCG
776 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
14358745 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCCGCGTGCTGCCAATCC
841 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * *
14358808 TACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAT
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14358873 CCAACGAAACGACCGGGCGGGCAGGCGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* *
14358938 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14359003 TTTTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** ***
14359068 GACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCAAAATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTT
* * * *
14359133 TCGTAA-GAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGCATAAA
325 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAA
* * * *
14359196 AAAATTCAACTAAAAACTTGAAGTGTACAAGATTTT-TTACCATTTGAAAAAAGTGTCCCCAATT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* **
14359260 CAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATAATCTTTAA-GGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14359324 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
519 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14359389 TCATGTGCGCACAGCCCCCCCGGCCCTCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCT
584 TCATGTGCGCACA-CCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
14359454 CCGGTC-ATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCGGAGCC
648 CCGG-CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
14359518 CAGTATGTGCTG-TCGTAACCCTCGGTCTCGTGCGATCTTAGACTGGGAATGAACTCTGTATGCT
712 CAGCATGTGCTGCT-GCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * **
14359582 TAGACTGGAAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTTAGTTG
776 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
14359647 GCTAGAGGGGCAGGATGCGCAAGCCAGGGATTGATCGAGTCCCCCTCTGCGTGCTACCGATCC
841 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * *
14359710 TGCTGCCGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATAAACTCCGTATCCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14359775 CCGACGAAACGA--------GAGGGCGAGCAGGCACTACGCTGGCCAGATAGACGGGATGCGCTA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
**
14359832 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14359897 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
14359962 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
14360027 TGGAAGG-GATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
326 CGAAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * * *
14360091 AACTTTCAGCTAAAAACTCGAAATGTACAAGATTTTGTAACCATTTGAAAAACGTCTCCCTATTT
390 AA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14360156 CAGACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14360221 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCGATATAAGGGCCAAGCACCAGCACCCATCGCACA
519 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** * * * *
14360286 TCATGTGTGCACACCCCCCC-G-TCCCCCGATCACCGGAACCCCAATACTGTCGGTCAGGTTCTT
584 TCATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *** * * ** *
14360349 CGGTGAAAATTC-A-G-TGAT-----GGC-AAGAAAAAATG-TACACTAGCACATGCCC--G-CC
649 CGGCGATGCTCCGACGATGGTGCCCCGGCGAAG-AAAAATGCGGCACCAGCACATGCCCGAGCCC
* ** * *
14360401 AGCATGTGTTGCCACAA-CCTCGGTCTGGT-AAGATCTTAGACGGAATGAACCCATGCTTAATGG
713 AGCATGTGCTGCTGCAACCCTCGGTCTGGTCCA-ATCTTAGAC----TG-------G------GA
* * * ** * *
14360464 ATGAACTCC-TTTGCTTAGACTGGG-ATGAACATCCGTTATGCTTAGACTGGATCGAC-ATGAAC
760 ATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCCG-TATGCCTA-AGTCAACCCACGA--AAC
** * * * *
14360526 -AGCACGC-GGCGCTCAGTCGACGC-TA-GGGC--GAT--G-AAG--TGGGATC-A-CTGGAG-C
820 GAGCGTGCGGGCGCTCAGCCGGC-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GG-GTC
* * *
14360577 TCC-TC--AG-G--G--AAT-C
882 CCCTTCTGCGTGCTGCCGATCC
** * *
14360590 TG-TACCGC-A-CCT-GGTCCAG--C-A-CTTAGA--GGGAATGAACT-TGTATGCCTAA-CGAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
14360643 CTG-CGAAATG-GCAGG-AGGC--GC-GGCGCGGAACTACACCGGCCAGATAGATGGGATGCGCA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCG-GGCACTACGCTGGCCAGAGAGACGGGATGCGCA
* * * **
14360702 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATGTTCACATTTCTGTGTGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
14360767 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * *
14360832 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAGGAATTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
14360897 TTGTAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAA
325 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14360962 AACATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
390 AA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14361027 CAAACACTTTAATGACTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14361092 GTTCTTGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
519 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
14361157 TCATTTGTG-ACACCCCCCGA-CCCCCCCGATCGTCGGAACCCCAAAGCCACCGATCAGGTTCTT
584 TCATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * ** * *
14361220 TGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
649 CGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
**
14361285 GCATGTGCTGCCACAA-CC-C--TC-GG-----TC-----C--------AA-TCCG-AT-CTTAG
714 GCATGTGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
14361324 ACTGGCAATGAACTCTGTATGCCTAAGTCGACCCACGAAACGAGCATGCGGGCGCTAAGTCGGCC
779 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * *
14361389 AGAGGGGAGGGCTGCGCAAGCCGGGGATCGATC-GGTCCCCCTT-TGCGTGCTGTCGATCC
844 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTTCTGCGTGCTGCCGATCC
** * * * * *
14361448 TGCTGTCGTAACCCTCGGTTTGATCCGATCTTAGACTAGGAATGAACTCCGAATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14361513 TCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCTGGCCAGAGAGATGGGATACGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* * * *
14361578 GCCGTGGATCGATAGAGTGGTAGGTTGGTTTGGGCACATCTTCATATTTCTGCCTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14361643 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14361708 GACTTGTTTTCTATTTTTCATGATATTTGAAACTTTTTACGGTTCGGGATCTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * ** * *
14361773 CGAATGGATTTTTGGCAACAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
326 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14361838 AAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
391 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
14361903 GACACTTTAATTGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGT
456 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14361968 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGTACATC
521 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** * **
14362033 ATGTGCGCACA-CCCCCCTGGACCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTA
586 ATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * *
14362097 GCGATGCTCCGACGATGGTCCCCCGACGAAGAAAATTACAGCACCAGCACATGCTCGAGCCCAAC
651 GCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
14362162 ATGTGCTACTGCAACCGTCGGTCTGGTCCAAT-TTGAGACAGGGAATGAACTCCATATGCTTAGA
716 ATGTGCTGCTGCAACCCTCGGTCTGGTCCAATCTT-AGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * *
14362226 CTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGGGCATGCAGGCGCTCAGTCGGCCA
780 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * *
14362291 GAGGGGTGGGATGCGCATGCCAGGGATCGGTCGGGTGCCCC-TCTGCATGCT-CTTGATCT
845 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTTCTGCGTGCTGC-CGATCC
** *
14362350 TGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
14362415 CCGACGAAA
66 CCGACGAAA
14362424 TGAGTAAGCG
Statistics
Matches: 6241, Mismatches: 783, Indels: 401
0.84 0.11 0.05
Matches are distributed among these distances:
839 3 0.00
840 14 0.00
841 21 0.00
842 16 0.00
843 10 0.00
844 4 0.00
846 1 0.00
847 3 0.00
848 1 0.00
849 7 0.00
850 4 0.00
851 2 0.00
852 1 0.00
853 1 0.00
855 1 0.00
857 2 0.00
858 3 0.00
859 3 0.00
860 1 0.00
861 3 0.00
862 3 0.00
864 1 0.00
865 1 0.00
866 6 0.00
867 6 0.00
868 15 0.00
869 19 0.00
870 25 0.00
871 508 0.08
872 11 0.00
873 6 0.00
874 196 0.03
875 370 0.06
876 9 0.00
877 4 0.00
878 1 0.00
879 18 0.00
880 24 0.00
881 22 0.00
882 15 0.00
883 21 0.00
885 20 0.00
886 9 0.00
888 5 0.00
889 257 0.04
890 9 0.00
891 3 0.00
892 6 0.00
893 14 0.00
894 265 0.04
895 144 0.02
896 87 0.01
897 111 0.02
898 39 0.01
899 18 0.00
900 9 0.00
901 623 0.10
902 1170 0.19
903 777 0.12
904 684 0.11
905 335 0.05
906 2 0.00
907 1 0.00
908 1 0.00
909 8 0.00
910 1 0.00
911 1 0.00
914 1 0.00
915 1 0.00
916 2 0.00
917 214 0.03
919 42 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
GCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCGATCC
Found at i:14359594 original size:26 final size:26
Alignment explanation
Indices: 14359554--14359606 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14359544 CTCGTGCGAT
*
14359554 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGAAATGAACTTC-GTATG
14359580 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
14359606 C
1 C
14359607 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:14360491 original size:24 final size:27
Alignment explanation
Indices: 14360462--14360513 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
14360452 CATGCTTAAT
14360462 GGATGAAC-TCC-TT-TGCTTAGACTG
1 GGATGAACATCCGTTATGCTTAGACTG
14360486 GGATGAACATCCGTTATGCTTAGACTG
1 GGATGAACATCCGTTATGCTTAGACTG
14360513 G
1 G
14360514 ATCGACATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 8 0.32
25 3 0.12
26 2 0.08
27 12 0.48
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (27 bp):
GGATGAACATCCGTTATGCTTAGACTG
Found at i:14362226 original size:26 final size:26
Alignment explanation
Indices: 14362197--14362246 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14362187 GTCCAATTTG
14362197 AGACAGGGAATGAACTCCATATGCTT
1 AGACAGGGAATGAACTCCATATGCTT
* *
14362223 AGACTGGGAATGAACTCCGTATGC
1 AGACAGGGAATGAACTCCATATGC
14362247 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACAGGGAATGAACTCCATATGCTT
Found at i:14362928 original size:26 final size:26
Alignment explanation
Indices: 14362892--14362944 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14362882 CTGGTCGGAT
14362892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14362918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14362944 C
1 C
14362945 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14364536 original size:717 final size:717
Alignment explanation
Indices: 14363074--14364484 Score: 2159
Period size: 717 Copynumber: 2.0 Consensus size: 717
14363064 GTCTGATCCA
* *
14363074 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAGCTGACGAAAAGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAAAGAGCGGGCGGGCGGGCA
*
14363139 GGCGGGCACTACATCGGCTAGAGACACGGGATGCGCAAGCCGTGGATCGATAGCATGGTAGGTGG
66 GGCGGGCACTACACCGGCTAGAGACACGGGATGCGCAAGCCGTGGATCGATAGCATGGTAGGTGG
* *
14363204 GTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTACGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
14363269 GGTCCTATAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
196 GGTCCTATAAGCCTTCACGTGAAGCTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATTTT
*
14363334 TGAAACATTTTACAGCTCAAGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGATCCAAACTTGG
261 TGAAACATTTTACAGCTCAAGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGACCCAAACTTGG
* *
14363399 GAGATGTGATCCTTGTATTTTTGTTGGCACGCATAAAAAAAATCAGCTAAAAAATCGAAGTGTAC
326 GAGACGTGATCCTTGTATTTTTGTTGGCACGCAAAAAAAAAATCAGCTAAAAAATCGAAGTGTAC
*
14363464 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCACTGCCAGCAAA
391 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCACTGCCAGCAAA
* * * * *
14363529 CCGGTAAAATCTGAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGCTTGCTGAGGGATAGGGGG
456 CCGGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGCTTGATGAGGGATAGGGGG
** *
14363594 CCAATATAAGGGTGAAGCACCAGCACCCATCACACATCATGTGTGCACACCACCCCCGACCCCCC
521 CCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACCACCCCCGACCCCCC
* * *** * * * *
14363659 GATTGCCGTAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCTCTGGC
586 GATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCAACGACGCTCCGACGATGGTGCCCCGAC
*
14363724 GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATCTGCTCTCGCAATGCATGATTCGAT
651 GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATCTGCTCTCGCAATGCATGATCCGAT
14363789 CG
716 CG
* * *
14363791 ATCTTAGACTGGGAATGAA-TGCCGTATGCCTAACCCAACCGACGAAACGAGCGGGCGGGTGGGC
1 ATCTTAGACTGGGAATGAACT-CCGTATGCCTAAACCAACCGACGAAAAGAGCGGGCGGGCGGGC
* * * * **
14363855 GGGCGGGCGCTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
65 AGGCGGGCACTACACCGGCTAGAGACACGGGATGCGCAAGCCGTGGATCGATAGCATGGTAGGTG
**
14363920 GGTTTAGGCACATCTTCATATTTCTGTGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
130 GGTTTAGGCACATCTTCATATTTCTACGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
14363985 TGGTCCCT-TAAGCCTTCACGTGAAGCTTCATGGCAAGAAGACTCGTTTTCTTTTTTTCATGATT
195 TGGT-CCTATAAGCCTTCACGTGAAGCTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATT
* * * * *
14364049 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCACAAACT
259 TTTGAAACATTTTACAGCTCAAGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGACC-CAAACT
* ** *
14364113 TGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAAAAAAAAAATCAGCTAAAAACTCGAAGTG
323 TGGGAGACGTGATCCTTGTATTTTTGTTGGCACGCAAAAAAAAAATCAGCTAAAAAATCGAAGTG
*
14364178 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
388 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-ACTGCCAG
* * *
14364243 CAAACCTGTAAAATCTCAATTGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
452 CAAACCGGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGCTTGATGAGGGATAG
* * ** *
14364308 GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGTACATCATGTGCGCACACC-CCCCCGGCC
517 GGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACCACCCCCGACC
* * *
14364372 CCCCGATCGTCGGAACCC-AATGCTGTCGGTCAGGTTCTCCAACGACGCTCCGACGATGGTGCCC
582 CCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCAACGACGCTCCGACGATGGTGCCC
*
14364436 CGACGAAGAAAAATGC-GACACCAGCACATGCCCGAGCCCAGCATGTGCT
647 CGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATCTGCT
14364485 GTCGTAGCCC
Statistics
Matches: 626, Mismatches: 63, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
715 1 0.00
716 85 0.14
717 425 0.68
718 115 0.18
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (717 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAAAGAGCGGGCGGGCGGGCA
GGCGGGCACTACACCGGCTAGAGACACGGGATGCGCAAGCCGTGGATCGATAGCATGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCTATAAGCCTTCACGTGAAGCTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATTTT
TGAAACATTTTACAGCTCAAGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGACCCAAACTTGG
GAGACGTGATCCTTGTATTTTTGTTGGCACGCAAAAAAAAAATCAGCTAAAAAATCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCACTGCCAGCAAA
CCGGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGCTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACCACCCCCGACCCCCC
GATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCAACGACGCTCCGACGATGGTGCCCCGAC
GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATCTGCTCTCGCAATGCATGATCCGAT
CG
Found at i:14365598 original size:185 final size:185
Alignment explanation
Indices: 14365265--14365624 Score: 508
Period size: 185 Copynumber: 1.9 Consensus size: 185
14365255 GCGCACACCC
* * *
14365265 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCTGACG
1 CCCCGGCACCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACG
* *
14365330 ATGGTGCCCAGACGAAGTAAAATACGACACCAGCACACGCTCAAGCCCAGCATGTGCTGCCGCAA
66 ATGGTGCCCAGACGAAGAAAAATACGACACCAACACACGCTCAAGCCCAGCATGTGCTGCCGCAA
*
14365395 CCTTCGATCCAATCTGATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAAA
131 CCCTCGATCCAATCTGATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAAA
* ** * *
14365450 CCCCGGCACCCTCGATCGTCGGAACCCCAATGCTGCCGGTTAGGTTCTCCGACGATGCTCCGGCG
1 CCCCGGCACCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * * * *
14365515 ATGGTGCCCCCG-CGAAGAAAAATGCGACACCAACACATGC-CTGAGCCTAGCATGTGCTGCCGT
66 ATGGTG-CCCAGACGAAGAAAAATACGACACCAACACACGCTC-AAGCCCAGCATGTGCTGCCGC
* * *
14365578 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
129 AACCCTCGATCCAATCTGATCCTAGACTGGGAATGAACTCCGTATGC
14365625 TTGGACTGGG
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
184 1 0.01
185 148 0.97
186 4 0.03
ACGTcount: A:0.23, C:0.34, G:0.24, T:0.18
Consensus pattern (185 bp):
CCCCGGCACCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACG
ATGGTGCCCAGACGAAGAAAAATACGACACCAACACACGCTCAAGCCCAGCATGTGCTGCCGCAA
CCCTCGATCCAATCTGATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAAA
Found at i:14366527 original size:26 final size:26
Alignment explanation
Indices: 14366498--14366550 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14366488 CCGGTCCGAT
14366498 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14366524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14366550 C
1 C
14366551 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14367425 original size:26 final size:26
Alignment explanation
Indices: 14367387--14367439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14367377 CCAGTTCGAT
14367387 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14367413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14367439 C
1 C
14367440 CCAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14368882 original size:897 final size:897
Alignment explanation
Indices: 14365450--14370981 Score: 7261
Period size: 898 Copynumber: 6.2 Consensus size: 897
14365440 ATAAGTCAAA
* * * *
14365450 CCCCGGCACCCTCGATCGTCGGAACCCCAATGCTGCCGGTTAGGTTCTCCGACGATGCTCCGGCG
1 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCG-CGATGCTCCGACG
* * *
14365515 ATGGTGCCCCCG-CGAAGAAAAATGCGACACCAACACATGCCTGAGCCTAGCATGTGCTGCCGTA
65 ATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCA
* * *
14365579 ACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTC
129 ACCCTCGGTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ** * * * * *
14365644 TGTATGCCTAAGTCAACCCACGAAATGAGCGTCCGGGCGCTCAACTGGCCA-AAGGGCGGGATGT
193 CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * *** * * * * * *
14365708 GCAAGTCGGGGATCGAAAGGGTCCCCCTTTCCGTGCTACCAATCTTGCTGCCACAACCCTCAGTC
258 GCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTC
*
14365773 CGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA-CTGACGAAATGAGCAAGCG
323 CGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATC-GACGAAACGAGC--G-G
* * *
14365837 GACGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
384 G--TGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
** ** ** *
14365902 GTATTTGGGTTTACACACATCTTCATATTTCTGTGTACCAATGCCATTTTTATGGCTTGTAAATT
447 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
14365967 CATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTA-TTTTA
512 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
*
14366031 ACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG-TGTTTTGGCCC
577 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAT-TTTTGGCCC
* * * *
14366095 CAAAATTGGAAGACGTGATCCTTTTATTTTTGTTGGCATGCAAAAAAACATTCAGCTAAAAACTC
641 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTC
*
14366160 GAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
706 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
14366225 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAG
771 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
14366290 AGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGT-CTGCACA-CC
836 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCC
* * * * * * *
14366351 CCCTGG-CCCCCAGATCATCGGAACCCCAATACCGCCGGTCAGGTTCTCCAGTGATGCTCC-AGT
1 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCC-GCGATGCTCCGA-C
* * ** *
14366414 GATGGCGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCA
64 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCA
*
14366479 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
129 ACCCTCGGT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * * *
14366544 CGTATGCCTAAGTCAACACATGAAACGAGCGTGCGGGCACTCAGACAGCCATAGGGGCGGGATGA
193 CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * *
14366609 GCAAGTCGAAGATCGGGCAGGTCCCCCTCTGCGTGCT---G--CC-G-T-----AACCCTCGGTC
258 GCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTC
* * * * * * *
14366662 TGGTCCGATCTCAGACTAGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGTGG
323 CGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGT-G
* *
14366727 GCGGGCGGACACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
387 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * ** *
14366792 TGGGTTTAGGCACATCTTTATATTTCTACATGGCAATGCCATTTTTATTTCTGGTAAATTCATAC
452 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * ****
14366857 AATGGTCCCTTAAGCCTTGACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTTTTAT
517 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
14366922 TTTTGAAACTTTTTAAGGTTCGAGG-TTTTTTAAAATTTTTTTGTAAGGAGTTTTGGCCCCAAAC
582 TTTTGAAACTTTTTACGGTTCG-GGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAAC
* * * * *
14366986 TTCGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAATTCGAAGT
646 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
* *
14367051 GTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
711 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* **
14367116 GCAAACCTGTAAAATCTCAAACGCTCTTTAAGGTAGTGTGAGTTCTCGAGGTTTGATGAGGGATA
776 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14367181 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCC
841 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
** * *
14367239 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGGTCTCCGGGGATGCTCCGACG
1 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCC-GCGATGCTCCGACG
* * ** *
14367304 ATGGTGCCTCGATGAAGAAAAATGTAGCACCAGCACGA-GCCCGAGCCTAGCATGTGCTGCCGCA
65 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC-ATGCCTGAGCCTAGCATGTGCTGCCGCA
* * * * *
14367368 ACCCTCGGGCCAGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
129 ACCCTCGGTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * * * *
14367433 CGTATGCCCAAATCAACCAACGAAATGAAG-GTACGGGCACTAAGCAGGCCAGATGGGCGGGATG
193 CGTATGCCTAAGTCAACCCACGAAA-CAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * *
14367497 CGCAAGCTGAGGATCGGTTGGATCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCCCGGT
257 CGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
* ** *
14367562 CCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGT-
322 CCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGTG
* *
14367626 ------GGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
387 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
14367685 TGGGTTTAGGCACAACTTTATATTTCTTCAGGCCAATAG-CATTTTTATGGCTTGTAAATTCATA
452 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT-GCCATTTTTATGGCTTGTAAATTCATA
* * * *
14367749 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTTATTTTTCATG
516 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACG
** * *
14367814 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATATTTTT-GGAAGGAGTTTTGGCCCCAA
580 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGAAAGGATTTTTGGCCCCAA
* *
14367878 ACTTGGTAGACGTGATCCTTGCT-TTTTTGTTGGCTTGCACAAAAAAAA-GCAGCTAAAAACTCG
644 ACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCG
* * *
14367941 AGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTATT
707 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
14368006 GGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCTAGGTTTGATGAGG
772 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* **
14368070 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTTTGCACACCC
837 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * **
14368131 CCCCGACCCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCAGGTTCTCCAGCGATGCTCCGGTG
1 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCC-GCGATGCTCCGACG
* * * *
14368196 ATGGT-CCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCTAGTATGTGCTACCGCAA
65 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAA
* * * *
14368260 CCCTCGGTCTGATCCGATCTTCGACTGGGAATGAACTCTGTATGCTTACACTGGGAATGAGCTCC
130 CCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * *
14368325 GTAGGCCTAAGTCAATCCATGAAA-AAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATGCA
194 GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * *
14368389 CAAGCCGGGGATTGGTCGGGTCCCCCTCTATGTGCTGTCGATCCTGTTACCACAACCCTCGGTCC
259 CAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCC
* * * *
14368454 AGTCTGATCTTAGATTGGGAATGAACTCCTTATGCCTAAACCAATCGATGAAACGAGCGGGCTGG
324 GGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGG-TGG
* *
14368519 CGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGT
388 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
14368584 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
453 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * **
14368649 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGTAGGACGACTCGTTTTCTATTTTTCATAATT
518 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
14368714 TTTGAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTT
583 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTT
* *
14368779 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATT-AGCTAAAAACTCGAGGTG
648 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
14368843 TACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAG
712 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14368908 CAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
777 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
14368972 GTGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCACACACCC
842 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* *
14369028 CCCCGACCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGACG
1 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCG-CGATGCTCCGACG
*
14369093 GTGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAA
65 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAA
*
14369158 CCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG-TTAGACTGGGAATGAACTCC
130 CCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
14369222 GTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGTGGGATGCG
194 GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** * * * **
14369287 TAAGCCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTGTCACAACCCTCGGTTT
259 CAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCC
*
14369352 GGTCTGATCTTAGATTGGGAATGAACTCCTTATGCCTAAGCCAATCGACGAAACGAGCGGGCTGG
324 GGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGG-TGG
* * *
14369417 CGGGCGGGCACTACGCCGGCCAGAGAGACGCGATGCGCAAGCTGTGGATCGATTGGGTGGTAGGT
388 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
14369482 GGGTTTAGGCACATCTTCATATTTCTGC--G----TGCCA-----A------GTAAATTCATACA
453 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14369530 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCACAATT
518 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
14369595 TTTGAAGCTTTTTACGGTCCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTT
583 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTT
* * * *
14369660 GGTATATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
648 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
14369724 ACAAGATTTTGTGATCACTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGC
713 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14369789 AATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
778 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
14369854 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
843 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * *
14369910 CCGCCGGCCCCCCCGATCGTCGAAACCCCAATGCTGCTGGTCAAGTTCTCCGGTGATGCTCCGAC
1 CC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCC-GCGATGCTCCGAC
* * * *
14369975 GATGGTGCCCCGA-GAAAGAAAAATGTGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCTGC
64 GATGGTGCCCCGACG-AAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGC
* * ** * *
14370039 CACCCTCGGTCTGGTTTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACT
128 AACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
14370104 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGTCGGTCAGAGGGGCGGGATG
192 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * ** * * * ** *
14370169 CGTAAGCTGGGGATCGACCGGGTCCCTCTCTACATGCTGCCAATCCTATTGCCACAACCCTCAGT
257 CGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
* * * *
14370234 TCAGTCTGATCTTAGAGTGGGAATTAACTCCGTATGCCTAAGCCAATCGACGAAACGAGC--G-G
322 CCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGTG
* * * * * * *
14370296 GCGGGCAGGCACTTCGCCGGCTAAAGAGACGGGATGAGCAAGCCGTTGATCGATAGGGTGGTAAG
387 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
14370361 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTACGGCATGTAAATTCATAC
452 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14370426 AATGGTCCCTTAAGCCTTCACGTGATGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACGAT
517 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * ** * * * **
14370491 TTTCCAAAATTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTATCCCCAAACT
582 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACT
* * * * *
14370556 TGGTAGACGTGATCCTTGTATTTTTTTTGGAACGCAAAAAAAAATTCAACTACAAACTCGAAGTG
647 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
14370621 TACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTAGTAG
712 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14370686 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
777 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
14370751 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
842 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
14370807 CCCCGGCCCCCTCGATCGTCGGAACCCCAATGCTGCCGGTACA-ATTCTCTGATGATGCTCCGAT
1 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGT-CAGGTTCTCCG-CGATGCTCCGAC
* * * * *
14370871 GATGGTGCCCCGACGAAGAAAAATGTGACACCAGTACATG-CTCGAGCCCAGCATGTGCTGCCGT
64 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCTAGCATGTGCTGCCGC
* *
14370935 AACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
128 AACCCTCGGTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
14370982 CTAAGCGAAC
Statistics
Matches: 4091, Mismatches: 456, Indels: 173
0.87 0.10 0.04
Matches are distributed among these distances:
879 9 0.00
880 198 0.05
881 240 0.06
882 8 0.00
883 151 0.04
884 184 0.04
885 164 0.04
886 299 0.07
887 5 0.00
888 8 0.00
889 298 0.07
890 143 0.03
891 124 0.03
892 71 0.02
893 235 0.06
894 207 0.05
895 16 0.00
896 153 0.04
897 562 0.14
898 702 0.17
899 5 0.00
900 196 0.05
901 113 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGCGATGCTCCGACGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAAC
CCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
AGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGG
TCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGTGGCGG
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
Found at i:14369205 original size:25 final size:25
Alignment explanation
Indices: 14369177--14369226 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
14369167 TGATCCGATC
14369177 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14369202 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14369227 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (25 bp):
TTAGACTGGGAATGAACTCCGTATG
Found at i:14371707 original size:26 final size:26
Alignment explanation
Indices: 14371678--14371730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14371668 CCGGTCTGAT
14371678 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
14371704 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14371730 C
1 C
14371731 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:14373463 original size:26 final size:26
Alignment explanation
Indices: 14373412--14373464 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14373402 CCGGTTCGAT
***
14373412 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14373438 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14373464 C
1 C
14373465 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14374206 original size:26 final size:26
Alignment explanation
Indices: 14374177--14374229 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14374167 CCGATCCGAT
*
14374177 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
*
14374203 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
14374229 C
1 C
14374230 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:14374336 original size:765 final size:765
Alignment explanation
Indices: 14372848--14374325 Score: 2316
Period size: 765 Copynumber: 1.9 Consensus size: 765
14372838 TATTTTTGCA
* *
14372848 TGCCAATGCCATTTTTATGGCTTGTAAGTTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* * *** *
14372913 CATGGCAAGATGGCTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTT
66 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACCACTTGAGATTTTT
*
14372978 TAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCATGTATTTTTGTTGG
131 TAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGG
* * * *
14373043 CTTGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
196 CATGCACAAAAACATTCAGCTAAAAACGCAAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGT
* * *
14373108 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTTAAATGCTCTTTAA
261 GTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
14373173 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
326 AGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCAC
* *
14373238 CCATCACACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGCCTGAACCTCAATGCCGCCGG
391 CCATCACACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGACTGAACCCCAATGCCGCCGG
* * * * **
14373303 TTAGTTTCTCTGACGATGCTCCGACGATGATGCCCCGACGAAGAAAAATACGGCACCAGCACATG
456 TCAGGTTCTCCGACGATGCTCCAACGATGATGCCCCGACGAAGAAAAATACCACACCAGCACATG
* * * * * * * **
14373368 CCCATGCCCAGTATGTGGTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTTT
521 CCCAAGCCCAGCATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGAAATGAACTCC
* * *
14373433 GTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACAAAACGAGCGTGCGGGCAC
586 GTATGCTTAGACTGGGAATAAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCAC
* * * * * *
14373498 TCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTGTC
651 TCAACCGACCAAAGGGGCAGGATGCACAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC
14373563 GATCCTGCTGCCGTATCCCTCGGTCTGATCCGATCTTAGGCGAATGGGCG
716 GATCCTGCTGCCGTATCCCTCGGTCTGATCCGATCTTAGGCGAATGGGCG
*
14373613 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACATGAAGTTT
*
14373678 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCCACTTGAGATTTTT
66 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACCACTTGAGATTTTT
* *
14373743 TAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
131 TAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGG
**
14373808 CATGCGTAAAAACATTCAGCTAAAAACGCAAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGT
196 CATGCACAAAAACATTCAGCTAAAAACGCAAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGT
14373873 GTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAA-CTGCTAAAATCTCAAATGCTCTTTA
261 GTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG-TAAAATCTCAAATGCTCTTTA
* *
14373937 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCA
325 AAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCA
* *
14374002 CCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGAC-GAAACCCCAATGCTGCC
390 CCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGACTG-AACCCCAATGCCGCC
* * ** *
14374066 GGTCAGGTTCTCCGGCGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCCACACCAGCACA
454 GGTCAGGTTCTCCGACGATGCTCCAACGATGATGCCCCGACGAAGAAAAATACCACACCAGCACA
14374131 TGCCCAAGCCCAGCATGTGCTACCGCAACCCTC-AGTCCGATCCGATCTTAGACTGGAAATGAAC
519 TGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGA-TCCGATCCGATCTTAGACTGGAAATGAAC
* *
14374195 TCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
583 TCCGTATGCTTAGACTGGGAATAAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGG
* * *
14374260 CGCTTAACCGACCAAAGGGGCAGGATGCCCAAGCC-GAGGATCGACCGGGTCCCCCTCTGCGTGC
648 CACTCAACCGACCAAAGGGGCAGGATGCACAAGCCAG-GGATCGACCGGGTCCCCCTCTGCGTGC
14374324 TG
712 TG
14374326 CTGGTCCTGC
Statistics
Matches: 645, Mismatches: 64, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
764 6 0.01
765 639 0.99
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (765 bp):
TGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACATGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACCACTTGAGATTTTT
TAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGG
CATGCACAAAAACATTCAGCTAAAAACGCAAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGT
GTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
AGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCAC
CCATCACACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGACTGAACCCCAATGCCGCCGG
TCAGGTTCTCCGACGATGCTCCAACGATGATGCCCCGACGAAGAAAAATACCACACCAGCACATG
CCCAAGCCCAGCATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGAAATGAACTCC
GTATGCTTAGACTGGGAATAAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCAC
TCAACCGACCAAAGGGGCAGGATGCACAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC
GATCCTGCTGCCGTATCCCTCGGTCTGATCCGATCTTAGGCGAATGGGCG
Found at i:14375110 original size:26 final size:26
Alignment explanation
Indices: 14375074--14375126 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14375064 CTGGTTTGAT
14375074 CTTAGACTGGGAATGAAC-CCTGTATG
1 CTTAGACTGGGAATGAACTCC-GTATG
14375100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14375126 C
1 C
14375127 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14376013 original size:26 final size:26
Alignment explanation
Indices: 14375977--14376029 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14375967 CTGATCTGAT
*
14375977 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
14376003 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14376029 C
1 C
14376030 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14376766 original size:894 final size:896
Alignment explanation
Indices: 14373613--14376897 Score: 4431
Period size: 894 Copynumber: 3.7 Consensus size: 896
14373603 CGAATGGGCG
*
14373613 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
14373678 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCCACTT-GAGATTTT
66 CATGGCAAGACGACTCAGTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGACTTCGAGATTTT
*
14373742 TTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
131 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
** * * * *
14373807 GCATGCGTAAAAACATTCAGCTAAAAACGCAAAGTGTACAAAATTTTGTGACCATTTGAAAAAAG
196 GCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTAAAAAAAG
*
14373872 TGTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAA-CTGCTAAAATCTCAAATGCTCTTT
261 TGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG-TAAAATCTCAAATGCTCTTT
*
14373936 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGC
325 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGC
* *
14374001 ACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGAAACCCCAATGCTGCC
390 ACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGACGGAACCCCAATGCTGCC
* ** *
14374066 GGTCAGGTTCTCCGGCGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCCACACCAGCACA
454 GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACA
* * *
14374131 TGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGAAATGAACT
519 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT
* * * *
14374196 CCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
584 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCGGGC
* * *
14374261 GCTTAACCGACCAAAGGGGCAGGATGCCCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTG
649 GCTCAACCGACCAGAGGGGCAGGATGCGCAAGCCG-GGATCGACCGGGTCCCCCTCTGCGTGCTG
*** * * *
14374326 CTGGTCCTGCTACCACAACCCTCAATCCT-GTCCAATCTTAGACAGGGAATGAACTCCGTATGCC
713 CCAATCCTGCTACCACAACCCTCAGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
14374390 TAAGCCAACTGACGAAACAAGCGGGCTGACGGGCGGACGGGCGGGCGGGCACCACACCGGCCAGA
777 TAAGCCATC-GACG-AA-AA----GC-GA---GCGGA---GCGGGTGGGCACTACGCCGGCCAGA
14374455 GAGACGGGATGCGCAAGCTGTGGATCGAT-AGCGTGGTAGGTGGG-TTAGGCACATCTTCATATT
828 GAGACGGGATGCGCAAGC-GTGGATCGATAAG-GTGGTAGGTGGGTTTAGGCACATCTTCATATT
**
14374518 TCTGTG
891 TCTGCA
* *
14374524 TGCCAATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * *
14374589 CATGGCAAGACGACT-TGTTTTCTATTTTTCATGATTTTTCAAACTTTTTGC-AGTTC-AAATTT
66 CATGGCAAGACGACTCAG-TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGACTTCGAGATTT
* * * * *
14374651 TTAAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTAGGTAGACGTAATCCTTGTATTTTTGTT
130 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * * * * *
14374716 AGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAA
195 GGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTAAAAAAA
* * *
14374781 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
260 GTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
** * *
14374846 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGTATAAAGGG-CCAATATAAGGGCCAAGTACCAG
325 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGGGGCCCAATATAAGGGCCAAGTACCAG
* *
14374910 CACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGATCGTCGGAACCCCAATG--G-C
389 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGACGGAACCCCAATGCTGCC
* * * * * *
14374971 -ATC-GG---T-C-A-GGTTCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACA
454 GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACA
* * * * * **
14375028 TGCCCGAGCCCTGCATGTGCTGCCGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAAC-
519 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT
*
14375092 CCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCTCACGAAACGAGCATGCGGG
584 CC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCGGG
* * * * *
14375157 CGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCTGGGATTGACCAGGTCACCCTCTACGTGCT
648 CGCTCAACCGACCAGAGGGGCAGGATGCGCAAGCC-GGGATCGACCGGGTCCCCCTCTGCGTGCT
* * * * * * *
14375222 GTCAATCCTGCTACCGCAACCCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCATATGCC
712 GCCAATCCTGCTACCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
14375287 TAAGGCAATCGACGAAATGAGCGGGCGGACGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGG
777 TAA-GCCATCGACGAAA--AGCGAGCGGA---GCGGGTGGGCACTACGCCGGCCAGAGAGACGGG
* * *
14375352 ATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
836 ATGCGCAAG-CGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * *
14375414 TGCCAATGCCATTTTTATGGCTTTTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * *
14375479 CATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGTG-GTTCGAGATTTT
66 CATGGCAAGACGACTCAGTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGACTTCGAGATTTT
* *
14375543 TTAAAA-ATTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
131 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
14375607 GCATTCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCAATTGAAAAAGA
196 GCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACC-ATTTAAAAAAA
*
14375672 GTGTCCCAATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT
260 GTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
14375737 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGCCCAATATAAGTGCCAAGTACCAGC
325 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGC
* ** *
14375802 ACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGACGGAAGACCAATGCCGCCG
390 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGACGGAACCCCAATGCTGCCG
* *
14375867 GTCAGGTTCTCCGACAATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAA-GTCGACACCAGCACA
455 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG-CGACACCAGCACA
* * * * * *
14375931 TGCCCGAGCCCAGCATATGCTGCCGCAACCCTTGGTCTGATCTGATCTTAGATTGGGAATGAACT
519 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT
* * * *
14375996 TCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCATCCCACGAAACGAGAATGCAGGC
584 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCGGGC
* * *
14376061 GGTCAGCCGCCCAGAGGGGC-GTGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCT
649 GCTCAACCGACCAGAGGGGCAG-GATGCGCAAGCC-GGGATCGACCGGGTCCCCCTCTGCGTGCT
* * * * * *
14376125 ACCCATCCTGCTATCACAACCCTCAGTCTGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCC
712 GCCAATCCTGCTACCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
14376190 TAAGCCGATCGACG-AAA-CGAGCGGA-CGGGTGGGCACTACGCCGGCCAGAGAGATGGGATGCA
777 TAAGCC-ATCGACGAAAAGCGAGCGGAGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
14376252 CAAGTCATGGATCGATAAGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
841 CAAG-CGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
14376309 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
14376374 CATGGCAAGACGACTC-GTTTCTATTTTTCACGATTTTTGAAACTTTTTACGA-TTCGGGATTTT
66 CATGGCAAGACGACTCAGTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGACTTCGAGATTTT
* * * *
14376437 TTAAAATTGTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTG
131 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* **
14376502 GCATGCACAAAAAAATTCAGCTAAAAACATAAAGCATACAAGATTTTGTGACCATTTAAAAAAAG
196 GCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTAAAAAAAG
* *
14376567 TGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
261 TGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* **
14376632 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGGCAGCA
326 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCA
* * *
14376697 CCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCTGCGGG
391 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGACGGAACCCCAATGCTGCCGG
* * * * * *
14376762 TCAGGTTCTCTGACGATGCTCCGGCAATGGTGCCCC-ATCGAA-AAAAATTACGGCACCAGAACA
456 TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGT-GAAGAAAAA-TGCGACACCAGCACA
* * * *
14376825 TGCCCAAGCCTAGCATGTGCTGCCGCAACCCTCGATCCAATCCGATCTTAGATTGGGAATGAACT
519 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT
14376890 CCGTATGC
584 CCGTATGC
14376898 CTAAACCAAC
Statistics
Matches: 2097, Mismatches: 238, Indels: 95
0.86 0.10 0.04
Matches are distributed among these distances:
889 67 0.03
890 236 0.11
891 166 0.08
892 23 0.01
893 8 0.00
894 347 0.17
895 265 0.13
896 7 0.00
897 267 0.13
898 5 0.00
899 8 0.00
900 3 0.00
901 1 0.00
902 7 0.00
903 275 0.13
904 3 0.00
905 1 0.00
906 1 0.00
908 24 0.01
909 6 0.00
910 262 0.12
911 115 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCAGTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGACTTCGAGATTTT
TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTAAAAAAAG
TGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGACGGAACCCCAATGCTGCCGG
TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATG
CCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCGGGCGC
TCAACCGACCAGAGGGGCAGGATGCGCAAGCCGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCA
ATCCTGCTACCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCATCGACGAAAAGCGAGCGGAGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
Found at i:14377616 original size:26 final size:26
Alignment explanation
Indices: 14377577--14377629 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14377567 ATGGTCCGAT
*
14377577 CTTAGACGAGGAATGAACTTCGTATG
1 CTTAGACGAGGAATGAACTCCGTATG
14377603 CTTAGACCGA-GAATGAACTCCGTATG
1 CTTAGA-CGAGGAATGAACTCCGTATG
14377629 C
1 C
14377630 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACGAGGAATGAACTCCGTATG
Found at i:14378721 original size:893 final size:889
Alignment explanation
Indices: 14376927--14382186 Score: 6267
Period size: 911 Copynumber: 5.9 Consensus size: 889
14376917 GAGCGAGTGG
* * * *
14376927 ACGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATTGATCGATAGGGTGG
1 ACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
**
14376992 TAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATTTCATTTTT-TGGCTTGTAAATT
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATT
*
14377055 CATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
130 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
*
14377120 ACGATTTTCAAAACTTTTTGGGGTTCAGGA-TTTTTAAAATTTTTTCGGAAGG-GATTTTGGCCC
195 ACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCC
* * * *
14377183 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAGAAA-TCAGGTAAAAACT
259 CAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA-AAATTCAGCTAAAAACT
* * * * * *
14377247 CAAAGTGTGCATGATTTTGTGACCATTTGAAAAAAGTGTGCCCGTTACAGACACTTTAATGGCTA
323 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
14377312 CTGGCAGCAAACCTGAAAAATCTCAAATGCTTTTTAAGGGGGTGTGCA-TTCTCGAGGTTTGATG
388 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCTCGAGGTTTGATG
14377376 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACC
452 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAC-CC
* * *
14377441 CCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAAGTTCTC--CG--G-T-----GAT
516 CCCGACCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCAGCGATGCTCCGACGAT
* * * * * *
14377496 CGTGCCTCGACGAAGAAAAATACGACACCGGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC
581 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACC
* * * * * *
14377561 CTCGGTATGGTCCGATCTTAGAC-GAGGAATGAACTTCGTATGCTTAGACCGAGAATGAACTCCG
646 CTCCGTCTAGTCCGATCTTAGACTG-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * ** *
14377625 TATGCCGAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGTCGGCCAGAGGCACGAGATGCGC
710 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGC
* * * * * * * *
14377690 AAGCTGGGGATCGGCCGGGTCCCTCTCTGCATGCTGTCAATCCTGCTACCGTAACTCTCCATTCG
775 AAGCTGGGGATCGGTCGGGTCCC-CTCTGCGTGCTGTCGATCCTGTTACCGCAACCCTCAATCCG
** * * *
14377755 GTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAA
839 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
14377806 ATGGGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCCCAAGCTGTGGA
1 A--------C--G-A-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
14377871 TCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
54 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
14377936 GCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
119 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
14378001 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGA
184 TTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
14378066 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCAG
249 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
14378131 CTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTT
314 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
14378196 TAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCAAG
379 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
14378261 GTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTATG
444 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG--TG
* *
14378326 CACACCACCCCCCCAACCCCCCCGATCGCTGGAACCCCAATGCCGTTGGTCAGGTTCTCAGGCGA
507 CACA-CA-CCCCCCGACCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCA-GCGA
* * *
14378391 TGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
569 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
14378456 GCTGCTATAACCCTCCGTCTAGTCTGATCTTAGACTGGGTATGAACTCCGTATCCGTAGACTGGG
634 GCTGCTGTAACCCTCCGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
14378521 AATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAG-CGGACCAGAGG
699 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGG-CCAGAGG
* ** * * * *
14378585 GGTGGGATGTACAAGCTGGGGATCGGTTGGGTCCCCTCTACGTGCTGTTGATCCTATTACCGCAA
763 GGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCTCTGCGTGCTGTCGATCCTGTTACCGCAA
* **
14378650 CCCTCAATCCGGTCTGATCTTAGA-TTGGAATGAGGTCCGTATGCCTAAGCCAACCGACGAA
828 CCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
14378711 ACGAGCGGGCGGGCACTACGTCGGCCAGAGAGAGGGGATGCGCAAGTCGTGGATCGATAGGGTGG
1 ACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
14378776 TAGTTTGGTTTAGTCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
14378841 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTTTTATTTTTC
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTC
* * ** *
14378906 ACGATTTTCAAAAATTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGCCC
195 ACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
** *
14378971 AAACACGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCG
260 AAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
14379036 AAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
325 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
14379101 GGCAGCAAGCCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
390 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
14379166 GATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
455 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCG
** * * *
14379231 GTCCCCCCAATCGATGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
520 ACCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCAG-CGATGCTCCGACGATGGT
* *
14379296 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG-TGCGTGTTAACCT
584 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-TG-TAACCC
* * * *
14379360 TCAGTCCCA-TCCGATCTTTAGACTGGGAATG-ACTCCGTATGTTTAGACTGGGAATGAACTCCA
647 TCCGT-CTAGTCCGATC-TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
*
14379423 TATGCCTAAGTCAACCCACGAAACGAGCGT----GCGC-CAG-AGG-C--A----CGGGATGCGC
710 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGC
* *** * * * * * **
14379475 AAGCCGGGGATCAACCGAGTCCCCCTCTACGTGGCGCTGTCAATCCTGCTGT-CCACAACCTTGG
775 AAGCTGGGGATCGGTCGGGT-CCCCTCTGCGT---GCTGTCGATCCTG-T-TACCGCAACCCTCA
* * *
14379539 GTCTGGTCT-ATATTAGACT-GG-ATGAACTCCGTATGCCT-AGCCAACCGATGAAACGATGCGG
834 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC---G--ACGA-----
14379600 A
889 A
* * * * * **
14379601 TACGCCAGCGGCCGGGCACTATGTAGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAATG
1 -ACG--AGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
14379666 TGGTAGGTGGGTTTAGGCACGTCTTCATATTTTTGCATGGCAATGCCATTTTAATGGCTTGTAAA
63 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
14379731 TTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTT
128 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** ** * *
14379796 TCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTC
193 TCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
14379861 CCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACT
258 CCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
14379926 CGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTA
323 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
14379991 CTGGCAGCAAGCTTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
388 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
** * * *
14380056 GGGATAGCAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA-C-CGTGTACGCA-----
453 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC
* * * * * *
14380114 C-A-CCCCCTGATTGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCAGCGATGCTCCGACAATG
518 CGACCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT-CAGCGATGCTCCGACGATG
* * * *
14380177 GTGCCCCGACGAAGAAACATGCGGCA-CAGCACATGCTCGAGCCCAGCATGTGCT-ATCGCAACC
582 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GTAA--
* *
14380240 CTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAGATTGGGAATGAACTCCGT
644 --C---CC--TCCG----T---CT----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGT
* *
14380305 ATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
685 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
** * * * **
14380370 AACCGGCCAGAGGGGCGGGATGCGCCAGCCGGGGATCGGTCGGGCCCCCTTCTGCGTGCTACCGA
750 AGTCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCC-TCTGCGTGCTGTCGA
* * *
14380435 TCCTGTTGCTGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGC
814 TCCTGTTACCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
14380500 CAACCGACGAA
879 CAACCGACGAA
* * *
14380511 ACGAGCGGGCGGGCAGGCAGTACGCCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCGATAGG
1 ACGAGCGGGCGGGCA--C--TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
14380576 GTGTTAGGTGGTTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
62 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
14380641 ATTCATACAATGGTCCCTTAAGCCTTGC-CGTGAAGTTTCATGGCAAGACGACTCATTTTTTATT
127 ATTCATACAATGGTCCCTTAAGCCTT-CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
14380705 TTTCACAATTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAAATTTTTCGGAAGGCGTTTTGG
191 TTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * *
14380770 CCCCAAACTTGGTTGACATGATCCTTGTATTTTTTTTAGCATGCATAAAAAAATTCAACTAAAAA
256 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
14380835 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
321 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
14380900 TGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
386 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
14380965 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATCACACAACATGTGCGCACACCC
451 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CC
* * * *
14381030 CCCCG-GCCCCCTGATCGCCGGAACCCCAGTGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGACG
515 CCCCGACCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT-CAGCGATGCTCCGACG
* * * * *
14381094 ATGGTGCCCCGGCGAA-AAAAATTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
579 ATGGTGCCCCGACGAAGAAAAA-TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTA
* * * **
14381158 ACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATAATTAGACTGGGAATGAACT
643 ACCCTCCGTCT-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
14381222 CTGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGCGCTCAGTCGACCAGAGGGGCGGGATG
707 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATG
* * * * * * * * *
14381287 CACAAGCTGGGGATCGATCGGGTCTCCCTTTGCATGCTGCCGATCTTGCTGCCGTAACCCTCAAT
772 CGCAAGCTGGGGATCGGTCGGGTC-CCCTCTGCGTGCTGTCGATCCTGTTACCGCAACCCTCAAT
*
14381352 CCGTTC-GAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
836 CCGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
14381406 ACGAGCGGGCTGGCGGGCGGGCGGGCGGGTAGGCACTACGTCGGCCAAAGAGATGGGATGTGCAA
1 ACGA----------------GCGGGC--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
14381471 GCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCA
46 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
14381536 TTTTTATGGCTTGTAAATTCATAAAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGAT
111 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
14381601 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GAGATTTTTTAAGATTTCT
176 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTT
* * * * * * * **
14381665 TCAGAATGAGTTTTGG-CCCAAA-TGTGGTAGACGTAATCCTTGTATTTTTGTTGGTAAGCGTAA
240 TCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
* * * * *
14381728 AAAAATTTAGCTAAACACTCAAAGTGTTCAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
304 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14381793 TCAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
369 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
14381858 AGTTCTCGAGGTTTGGTGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
434 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14381923 ATCTTGTGCGCACACCCCCTGACCCCCCCGATCG-TCGGAACCCCAAT---GTC-G-CCGG---T
499 ATCATGTGCACACACCCCCCGACCCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
14381979 -AG-G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCA
563 CAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
14382041 GCATTTGCTG-TCGCAACCCT-CGATCTGGTCCGATCTTTGACTGGGAATGAACTCTGCT-TGCT
628 GCATGTGCTGCT-GTAACCCTCCG-TCTAGTCCGATCTTAGACTGGGAATGAACTCCG-TATGCT
* * * *
14382103 CAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGTCG
690 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
14382168 GCCAGAGGGGCGGGATGCG
755 GCCAGAGGGGCGGGATGCG
14382187 TAAGTCAGGG
Statistics
Matches: 3792, Mismatches: 429, Indels: 301
0.84 0.09 0.07
Matches are distributed among these distances:
878 21 0.01
879 12 0.00
880 8 0.00
881 18 0.00
882 47 0.01
883 93 0.02
884 4 0.00
885 6 0.00
886 5 0.00
887 5 0.00
888 1 0.00
889 5 0.00
890 122 0.03
891 175 0.05
892 423 0.11
893 578 0.15
894 300 0.08
895 207 0.05
896 53 0.01
897 6 0.00
898 172 0.05
899 10 0.00
900 4 0.00
901 1 0.00
902 2 0.00
904 1 0.00
905 40 0.01
906 59 0.02
907 256 0.07
908 2 0.00
909 11 0.00
910 252 0.07
911 657 0.17
912 7 0.00
913 10 0.00
914 3 0.00
915 9 0.00
916 16 0.00
917 21 0.01
918 2 0.00
919 25 0.01
920 112 0.03
921 31 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
ACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
CGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
AACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGA
CCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCAGCGATGCTCCGACGATGGTGC
CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCCG
TCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTG
GGGATCGGTCGGGTCCCCTCTGCGTGCTGTCGATCCTGTTACCGCAACCCTCAATCCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
Found at i:14379404 original size:25 final size:26
Alignment explanation
Indices: 14379376--14379426 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
14379366 CCATCCGATC
*
14379376 TTTAGACTGGGAATG-ACTCCGTATG
1 TTTAGACTGGGAATGAACTCCATATG
14379401 TTTAGACTGGGAATGAACTCCATATG
1 TTTAGACTGGGAATGAACTCCATATG
14379427 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
TTTAGACTGGGAATGAACTCCATATG
Found at i:14380287 original size:26 final size:26
Alignment explanation
Indices: 14380258--14380334 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
14380248 GATCCGATCT
*
14380258 TAGACTAGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
* *
14380284 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCA
*
14380310 TAGACGGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14380335 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:14381214 original size:26 final size:26
Alignment explanation
Indices: 14381178--14381227 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14381168 CGGTCTGATC
14381178 TTAGACTGGGAATGAACTCCGTATAA
1 TTAGACTGGGAATGAACTCCGTATAA
*
14381204 TTAGACTGGGAATGAACTCTGTAT
1 TTAGACTGGGAATGAACTCCGTAT
14381228 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAA
Found at i:14382338 original size:34 final size:34
Alignment explanation
Indices: 14382295--14382377 Score: 124
Period size: 28 Copynumber: 2.6 Consensus size: 34
14382285 ACGAGCACTC
14382295 GGTTTGATGAGGGATAGGGGGTGTGAGTTCTCGA
1 GGTTTGATGAGGGATAGGGGGTGTGAGTTCTCGA
14382329 GGTTTGAT----G--AGGGGGTGTGAGTTCTCGA
1 GGTTTGATGAGGGATAGGGGGTGTGAGTTCTCGA
14382357 GGTTTGATGAGGGATAGGGGG
1 GGTTTGATGAGGGATAGGGGG
14382378 CCAATATAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
28 27 0.63
30 1 0.02
32 1 0.02
34 14 0.33
ACGTcount: A:0.17, C:0.05, G:0.49, T:0.29
Consensus pattern (34 bp):
GGTTTGATGAGGGATAGGGGGTGTGAGTTCTCGA
Found at i:14382798 original size:26 final size:26
Alignment explanation
Indices: 14382765--14382840 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
14382755 GTCCGATCTT
*
14382765 AGACTGGGAATTAACTCCGTATGCTA
1 AGACTGGGAATGAACTCCGTATGCTA
* *
14382791 AGACTGGGAATGAAATCCTTATGCTA
1 AGACTGGGAATGAACTCCGTATGCTA
*
14382817 AGACAGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14382841 CTATGTTAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTA
Found at i:14382959 original size:211 final size:212
Alignment explanation
Indices: 14382612--14383004 Score: 536
Period size: 211 Copynumber: 1.9 Consensus size: 212
14382602 GCTTAGACTT
* ** *
14382612 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCACTCAGCCGGCCAGAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGGCCAGAA
** * ** *
14382677 GGATGGGATACACAAGCTGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCGC
66 GGACAGGATACACAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTACTGCCAC
* * * *
14382742 AACCCTCAATTTGGTCCGATCTTAGACTGGGAATTAACTCCGTATG-CTAAGACTGGGAATGAAA
131 AACCCTCAATCTGGTCCGATCATAGACTGGGAATGAACTCCATATGCCTAAGACTGGGAATGAAA
14382806 TCCTTATGCTAAGACAG
196 TCCTTATGCTAAGACAG
* * * * * *
14382823 GGAATGAACTCCGTATGCCTATGTTAACCCACAAAATGAGTGTGCGGGCGCTCAGTCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGGCCAGAA
* * * * *
14382888 GGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCAT
66 GGACAGGATACACAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTACTGCCAC
**
14382953 AACCCTCGGTCTGGTCCGATCATAGACTGGGAATGAACTCCATATGCCTAAG
131 AACCCTCAATCTGGTCCGATCATAGACTGGGAATGAACTCCATATGCCTAAG
14383005 CCAACCAACG
Statistics
Matches: 154, Mismatches: 27, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
211 149 0.97
212 5 0.03
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (212 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGGCCAGAA
GGACAGGATACACAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTACTGCCAC
AACCCTCAATCTGGTCCGATCATAGACTGGGAATGAACTCCATATGCCTAAGACTGGGAATGAAA
TCCTTATGCTAAGACAG
Found at i:14386882 original size:26 final size:26
Alignment explanation
Indices: 14386853--14386905 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14386843 CCGGTCCGAT
*
14386853 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14386879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14386905 C
1 C
14386906 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14387090 original size:4 final size:4
Alignment explanation
Indices: 14387081--14387110 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
14387071 GACGAAACGA
*
14387081 GCGG GCGG GCGG GCGG GCGG GCGG GAGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
14387111 ACTATGCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.23, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:14389554 original size:709 final size:708
Alignment explanation
Indices: 14387004--14392063 Score: 6150
Period size: 702 Copynumber: 7.1 Consensus size: 708
14386994 CTATCGATCC
* * * *
14387004 TGCTGCTGCAACTCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCTAA
1 TGCTGC-GCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * *
14387069 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCGGGAGGGCACTATGCCGGCCAAAGAGACGGG
65 CCGACGAAACGA----GCGGGCGGGCGGGCGGGC----GGGCACTACCCCGACCAGAGAGACGGG
* * * *
14387134 ATGCGCAAGCTGTGGATTGATAGGGTGATAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGC
122 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * * *
14387199 CAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAACCTTCATGTGAAGTATCAT
187 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
14387264 GGCAAGTCGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTA
252 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTA
*
14387328 AAATTTTTTC-----G-G----GGCCCCAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCA
316 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* *
14387383 TGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGT
381 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
14387448 CCCCATTTCAGACTCTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGG
446 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
14387513 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
511 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
14387578 ATCGCACATCATGTGCGCACACACCCCCCCGACCCCCTCGATCGTCGGAACCCCAATGCCTCCGG
576 ATCGCACATCATGTGCGCACAC-CCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGG
* **
14387643 TCAGGTTCTCTGGCGATGTTCCGACGATGGTGCCCTGACGAAGAAAAATACGGTACCAGCACATG
640 TCAGG---T-T--C-----TCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATG
*
14387708 CCCAAGCCCAGCATG
694 CCCGAGCCCAGCATG
* ** * * *
14387723 TGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTG-CGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14387788 CCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGAGATGCGCAA
65 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACCCCGACCAGAGAGACGGGATGCGCAA
* * * **
14387849 GCCGTGGATCAATAGGGTGGTAGGAGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14387914 TTTTCATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
14387979 GACACGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * * * * *
14388044 CAGATGGAGTTTTGGCGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTAT-TACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14388108 CAAA-TCAGTTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
390 -AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14388172 TAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
14388237 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCCAC
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-CAC
** * * * *
14388302 ATCATAGTGCGCA-AAACCCCCCGG-CCCCCCGTTC-ACG--ACCGCAATGCCGGTCGGT-AGGT
583 ATCAT-GTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCC-GCCGGTCAGGT
* * *
14388361 TCTTCTGGCGATGGTGCCCCGATGAAAGAAAATAATAC-AGCACCAGCAACATGCCCGAGCCCAG
646 TC-TCCGACGATGGTGCCCCGACG-AAG-AAA-AATACGA-CACCAGC-ACATGCCCGAGCCCAG
14388425 CATG
705 CATG
* *
14388429 TGCTGC-CAACCCTCGGTCCAGT-TCGAATCATAGACTGCGGAATGAACTCCATATGCCTAAGTC
1 TGCTGCGCAACCCTCGGTCCAGTCT-G-ATCTTAGACTG-GGAATGAACTCCGTATGCCTAAG-C
* * * * *
14388492 CAACCGACGAAACGA-CGTGAGCAGGCGGTCGGGGCGGGCAACTA-CTCGACCA-AGGAAACGAG
62 CAACCGACGAAACGAGCG-G-GCGGGCGGGC-GGGCGGGC-ACTACCCCGACCAGA-GAGACGGG
* * * *
14388554 ATACGCAAGCC-AGGATCGATAGGGTGGTAGGT-GG-TTAGGCACAATTCTCCA-ATTAC-GCAT
122 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-A-TCTTCATATTTCTGCAT
*
14388614 GCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGG-CCCTTAAGCCGTTCACGTGAAGTTT
185 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAG-TT
* *
14388678 TCATGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGTTTCAGGATTTT
248 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTT
* * * * * *
14388743 GTAAAATTTTTTCGGAAGGAGTTTTAGCCCGAAACCTGGTGGACATGATCCTTGCATTTTTGTTG
313 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* *
14388808 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTATGACCATTTGAAAAAAG
378 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
14388873 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
443 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
14388938 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
508 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
14389003 CCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCTCGTTCGTCGAAACCGCAATGTCGTC
573 CCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCC
** * *
14389068 GGTCAGGTTCTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGACACCAGCACATGCCCGAGCCT
638 GGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCC
14389133 AGCATG
703 AGCATG
* * *
14389139 TGTTGTCGCAACCCTCGGTCCATTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTG-CGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14389204 CCGACGAAACGAGCAGACAGGCGGGCGGGCGGGCACTACCCCGACCAGGGAGACGGGATACGCAA
65 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACCCCGACCAGAGAGACGGGATGCGCAA
* * * *
14389269 -CTCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCAGATCTCCATATTACTGCATGCCAATGCC
130 GC-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
14389333 ATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14389398 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGCGGTTCAGGATTTTGTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* * * * * *
14389463 TCAGAAGGAGTTTTAGCCCCAAACCTGGCAGACATGATCCTTGCATTTTTTTTGGCATGCACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14389528 AAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTATGACCACTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14389593 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGAGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14389658 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGTACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14389723 TCATGTGCGCACA--CCCCCCGGCCCCCTCGATCGTCGGAAA-CCCAATGCCGCCAGTCAGGTTC
584 TCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTC
* * ** *
14389785 TCTGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAG-CCAGCATG
648 TCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATG
* * * *
14389845 TGCTACCGCAA----CAGTCCAGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCT-GCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * * *
14389906 CCGACGAAATGAGCGCGTGGGCGGGCGGGTAGGCACTACACCTG-CCAGAGATACGAGATGCGCA
65 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTAC-CCCGACCAGAGAGACGGGATGCGCA
* *
14389970 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTGCATGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
14390035 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * *
14390100 CGACTCGTTTTCTAATTTTCATGATTTTCGAAGCTTTTTACAGTTCAAGATTTTTTTAAATTTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* * * * ** *
14390165 TCGAAAAGAGTTTTGGCCCAAAACTTCGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
**
14390230 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
14390295 CAGACACTTTAACGGCTGCTCGCAACAAACTTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * *
14390360 GTTTTCGAGGTTTGATGAGGAATAAGGGGCC-ATATAAGGGCTAAGTACCAGCACCTATTGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
14390424 TCATGTGTGCAAACCCACCTCGGCCCCCCCGGATCATTG-GACCCCAATGCCCGCCGGTCAGGTT
584 TCATGTGCGCACACCCCCCCCGGCCCCCCC-GATCGTCGAAACCCCAATG-CCGCCGGTCAGG--
* *
14390488 CTTCGACGATGCTCCGACGATGGTGTCCCGACGAAG-AAAATGC-AGCACCAGCACACTGCCCGA
645 --T------T-CTCCGACGATGGTGCCCCGACGAAGAAAAATACGA-CACCAGCACA-TGCCCGA
14390551 GCCCAGCATG
699 GCCCAGCATG
* * * * * * *
14390561 TGCTGCTGTAA-CCTTGATCCGGTCCTGATCTT-GACTAGGAATGAACTTCCGTATTCCCATAAT
1 TGCTGC-GCAACCCTCGGTCCAGT-CTGATCTTAGACTGGGAATGAAC-TCCGTA-TGCC-TAAG
* * * * * * * *
14390624 CCCACCGACGAAACGAGCGGGCGGCACGGGCGGAGTGGGCACTACACCGGCTAGAGAGATGGAAT
61 CCAACCGACGAAACGAGCGGGCGG-GCGGGCGG-GCGGGCACTACCCCGACCAGAGAGACGGGAT
* * * *
14390689 GCGCAAGCCGTGGATC-ATAGGGTGGTACGTTGGTTTAGGCACATCTTCATATTTTTTCATGCCA
124 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * * * *
14390753 ATGCCATATTTATGGCTTGTAAATTCATAAAACGGTCCCTTAAGCCTTCACTTGAAGTTGCATGG
189 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
** * * *
14390818 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAGTTTTTGCGGTTCGGGATTTTTTAAAA
254 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
* *
14390883 TTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGC
319 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* * * * *
14390948 A-AAAAAAAATCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTCAATAAATTGTCCC
384 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
14391012 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
449 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
14391077 TGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAGGTACTAGCTCCCATC
514 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
14391142 GCACATAATGTGCGCACA--CCCCCCGACCCCCCCGATCGACGGAACGCCAATGCCGCCGGTCAG
579 GCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAG
* * *
14391205 GTTCTCCAGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCTACACCAGCACATGCTCG
644 GTTCTCC---GA--------CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCG
*
14391270 AGCCTAGCATG
698 AGCCCAGCATG
* *
14391281 TGCTGCAGCAACCATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGC-GCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
14391346 CCAATAAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
65 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACCCCGACCAGAGAGACGGGATGCGCAA
* * *
14391411 GCCATGGATCGATAGGGTGGTTGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG-CA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
14391475 GTTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTGCATCGCAAGA
195 -TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** **
14391540 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTTAAAATTTT
* * * * *
14391605 TTCGGAAGGAGTTTTGGCCCCAAACTTAGAAGACATGATCCTTTTATTTTTTTTGCCATGCACAA
323 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
14391670 AAAAATTCCGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAATGTCTCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
14391735 TCAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTGAAAAGCTCTTTAAGGGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
14391800 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14391865 ATCATGTGCGCACACCCCCCCGCTGGCCCCCCCGATC-ACCAGAACCCCAATGTCGCCAGTCAGG
583 ATCATGTGCGCACACCCCCCC-C-GGCCCCCCCGATCGTCGA-AACCCCAATGCCGCCGGTCAGG
* * ** * * * *
14391929 TTCTCCGGTGATGCTCCGACAATGTTGCCTCGGTGACGAAAAATATGGCACCAGCACTTGCCCGA
645 TTCTCC---GA-----CG---ATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGA
14391994 GCCCAGCATG
699 GCCCAGCATG
* ** * *
14392004 TGCTGC-CAGAACCCTCAGTCTGGTCCGATCATAGACTGGGAATGAACTCCGTATGCCTAA
1 TGCTGCGC--AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
14392064 ACTGGGAATG
Statistics
Matches: 3783, Mismatches: 434, Indels: 244
0.85 0.10 0.05
Matches are distributed among these distances:
701 39 0.01
702 484 0.13
703 26 0.01
704 33 0.01
705 21 0.01
706 66 0.02
707 334 0.09
708 41 0.01
709 374 0.10
710 169 0.04
711 192 0.05
712 262 0.07
713 42 0.01
714 46 0.01
715 53 0.01
716 248 0.07
717 211 0.06
718 99 0.03
719 280 0.07
720 89 0.02
721 68 0.02
722 175 0.05
723 396 0.10
724 35 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
TGCTGCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACCCCGACCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCC
GACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATG
Found at i:14392067 original size:26 final size:26
Alignment explanation
Indices: 14392038--14392089 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14392028 CCGATCATAG
14392038 ACTGGGAATGAACTCCGTATGCCTAA
1 ACTGGGAATGAACTCCGTATGCCTAA
14392064 ACTGGGAATGAACTCCGTATGCCTAA
1 ACTGGGAATGAACTCCGTATGCCTAA
14392090 GTGAACCCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCCTAA
Found at i:14392961 original size:26 final size:26
Alignment explanation
Indices: 14392932--14392983 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14392922 CGATCTGATA
14392932 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14392958 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14392984 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14393779 original size:900 final size:900
Alignment explanation
Indices: 14391307--14395638 Score: 5770
Period size: 866 Copynumber: 4.8 Consensus size: 900
14391297 GGTCCGGTCT
* *
14391307 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATAAAACG-AACGGGCGGGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C--T--GACGAAACGAGCGGGCGGG
* *
14391371 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTTGGT
61 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
14391436 TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG-CAGTTTTTATGGCTTGTAAATTCATAC
126 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATAC
* * * *
14391500 AATGGTCTCTTAAGCCTTCACGTGAAGTTGCATCGCAAGACGACTCGTTTTCTATTTTTCACGAT
190 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
** *
14391565 TTTCAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
255 TTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * * *
14391630 TTAGAAGACATGATCCTTTTATTTTTTTTGCCATGCACAAAAAAATTCCGCTAAAAACTCGAAGT
319 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
14391695 GTACAAGATTTTGTGTCCATTTGAAAAAAATGTCTCCATTTCAGACACTTTAATGGCTACTGGTA
384 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
14391760 GCAAACTTGTAAAATCTGAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14391825 GGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCTG
514 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCC-C-G
** * * * ** * * *
14391890 GCCCCCCCGATCACCAGAACCCCAATGTCGCCAGTCAGGTTCTCCGGTGATGCTCCGAC-AATGT
576 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATTG-
* ** * ** * *
14391954 TGCCTCGGTGACGAAAAATATGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCAGAACCCT
640 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
* * * *
14392019 CAGTCTGGTCCGATCA-TAGACTGGGAATGAACTCCGTATGCCTAAACTGGGAATGAACTCCGTA
705 CGGTCCGGTCCGAT-ATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * *
14392083 TGCCTAAGTGAACCCACGAAACAAACGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGACGCGCAA
769 TGCCTAAGTCAACCCAC-AAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAA
* * * * *
14392148 GCCGGGGATCGATCGGGTCCCACC-CTGCGTGCTGCCAAGCCTACTACCTCAACCCTCAG-TCTG
833 GCCGAGGATCGATCGGGTCCC-CCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTTCTG
14392211 GTAT-
897 GT-TC
* * *
14392215 GATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
* * * *
14392280 GGGCAATACGCCGACCAGAGAGAC-GGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGTGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
14392344 TAGGCACATCTTCATATTTCTGCATGCCAATG-CATTTTT-TGGCTTGTAAATTCATACAATGG-
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
14392406 CCCTTAAGCCTTCACGTGAAGTTTCATGGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTA
196 CCCTTAAGCCTTCACGTGAAGTTTCAT-GGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
* *
14392471 AAACTTTTTATGGTTCGGGATTTTTTAAAAGTTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
260 AAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
14392536 AGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGCT-TAC
324 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG-TGTAC
*
14392600 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
14392665 ACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGA-GCTTGCATGAGGGATAGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-ATGAGGGATAGGG
* * * * *
14392729 GGCCAACATAA-GGCCAAGTACTAGCACCCATCGCATATCATGTGCGCACACCCACCCTGGCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC-CCCCGGCCCC
* * ** ** * * * *
14392793 CCCGATCGCCGGAACCCCAATGTCGTTGGTCAGGTTCTCCGGTGATACTCTGGTGGTGGTGCCCC
581 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATTGTGCCCC
* *
14392858 GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCACAACCCTCGGTCC
646 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCC
* * *
14392923 GATCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAT
711 GGTCCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
14392988 GTCAACCCACGAAACGAGCATGCAGGCGCTCAGTCGACCAGAGAGGCGGGATGCGCAAGCC-AGG
776 GTCAACCCAC-AAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGA-G
* * * * ** *
14393052 GATCGACCGGGTCCCCCTCTATGTGCTGTCGATCCTACTACCACAACCCTTGGTTC-AGTTC
839 GATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTTCTGGTTC
* * *
14393113 AATCTTAAATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
* * *
14393178 GGGCACTACGCCGGCCAAAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
14393243 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
14393308 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACAATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * * * *
14393373 AACTTTTTAAGGTTTGGGATTTTTTAAAATTTTTCCAGAAGGATTTTTGGCCCCAAATTTGGCAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14393438 CCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGTAGTGTACAAG
326 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14393503 ATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
14393568 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGCGGGATTGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
14393633 AATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGTGAACACCCCCCCGGCCCCCTCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGA
* * * * *
14393698 TTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATTCTCTGGCGATTGTGCCCCGGCAA
586 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATTGTGCCCCGACGA
* * * * *
14393763 AAAAAAATACGGCACCAGCACATGTCCGAGCCCAGCATGTGCCGCCGCAA----C---CC--T-C
651 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCC
* *
14393818 G--A-T---C------CG--CTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAA
716 GATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
*
14393867 CCCACAAATCGAGCGTGCGGGCGCTCAGCCGGCTAAAGGGGCGGGATGCGCAAGCCGAGGATCGA
781 CCCACAAA-CGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGA
* * * * *
14393932 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCAG-TCCGGTCC
845 TCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTTCTGGTTC
* * *
14393987 GATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAAAC-GAC-AAA--A-----CGAGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACTGACGAAACGAGCGGGCGGGCGGG
* *
14394043 CGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * **
14394108 TTAGGCATATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14394173 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGATGACTCATTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
* *
14394238 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCCAACTTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
14394303 GACGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAAATCAGCTAAAAAATTGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
14394368 GATTTTGTGACCATTCGAAAAAAGTGACCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
14394433 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTTGAGGTTTGATGCGGGATTGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
14394498 CAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCG
*
14394563 ATCGTCGGAACCCCAGTGCCGCCGGTCAGGTTCTCCGACGATTCTCCGACGATTCTCCGGCGATT
585 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA---T--G-C---TCT--GGCGATT
* * * *
14394628 GTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCC
639 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCC
* * * *
14394693 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAACGAACTCCGTA
704 TCGGTCCGGTCCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
14394758 TGCCTAAGTCAACCCACAAGTCGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGAGGGATGCACAA
769 TGCCTAAGTCAACCCACAA-ACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAA
* * * * * * * * *
14394823 GTCGAGGATCGATCGGGTCTCCCTCTGCATGTTGCAGATCCTGCTGCCGCAACCCTCA-ATCTGG
833 GCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTTCTGG
14394887 TTC
898 TTC
* * * *
14394890 GATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAA-TCGACAAAAGGAGCGAGCGGGCAGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GAC-GAA--A-CGAGCGGGCGGG
* * *
14394954 CGGGCGGGCACTACGTCTGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
61 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * **
14395019 GGGTTTAGGCATACCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
126 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
14395084 ATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATT
191 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
* * *
14395149 TTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
256 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
14395214 GGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTG
321 GGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * * *
14395279 TACAAGATTTTGTGACCATTCGAAAAAAGTGACCCCATTTCAAACACTTTAATTGCTACTGGCGG
385 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14395344 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
450 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
14395409 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCACA-CCCCCCGGCCC
515 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCC
* * * * *
14395473 CCCCGATCGTCGGAACGCCAATGCCGCCGGTCAAGTTCTCTGACGATGCTCAGGCGATGGTGCCC
580 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATTGTGCCC
*
14395538 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAAG-ATGTGCTGCCACAACCCTCGGT
645 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC-CCAGCATGTGCTGCCACAACCCTCGGT
* * *
14395602 CTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
709 CCGGTCCGATATTAGACTGGGAATGAACTCCGTATGC
14395639 CTAAGCCAAC
Statistics
Matches: 3053, Mismatches: 293, Indels: 160
0.87 0.08 0.05
Matches are distributed among these distances:
866 530 0.17
869 1 0.00
871 1 0.00
872 1 0.00
873 8 0.00
874 164 0.05
875 9 0.00
876 5 0.00
877 60 0.02
878 1 0.00
881 1 0.00
884 3 0.00
886 1 0.00
887 2 0.00
888 1 0.00
890 2 0.00
891 1 0.00
893 3 0.00
896 1 0.00
897 4 0.00
898 345 0.11
899 77 0.03
900 406 0.13
901 418 0.14
902 37 0.01
903 250 0.08
904 140 0.05
905 5 0.00
906 2 0.00
907 2 0.00
908 38 0.01
909 1 0.00
910 2 0.00
912 1 0.00
915 317 0.10
916 213 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGA
TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATTGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCC
GATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGAT
CGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTTCTGGTTC
Found at i:14394609 original size:11 final size:11
Alignment explanation
Indices: 14394593--14394627 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
14394583 GCCGGTCAGG
14394593 TTCTCCGACGA
1 TTCTCCGACGA
14394604 TTCTCCGACGA
1 TTCTCCGACGA
*
14394615 TTCTCCGGCGA
1 TTCTCCGACGA
14394626 TT
1 TT
14394628 GTGCCCCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.14, C:0.34, G:0.20, T:0.31
Consensus pattern (11 bp):
TTCTCCGACGA
Found at i:14394744 original size:26 final size:26
Alignment explanation
Indices: 14394708--14394760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14394698 CCGGTCTGAT
*
14394708 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
*
14394734 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
14394760 C
1 C
14394761 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:14395768 original size:915 final size:888
Alignment explanation
Indices: 14393863--14395641 Score: 2578
Period size: 915 Copynumber: 2.0 Consensus size: 888
14393853 TATGCCTATG
** * * * * ** *
14393863 TCAACCCACAAATCGAGCGTGCGGGCGCTCAGCCGGCTAAAGGGGCGGGATGCGCAAGCCGAGGA
1 TCAACCCACAAGGCGAGCGAGCGGGCACTCAGCCGGCCAAAGGAGAAGGATGCACAAGCCGAGGA
* * * * * *
14393928 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCCGGTCCGATCTT
66 TCGATCGGGTCTCCCTCTGCATGTTGCAGATCCTACTGCCGCAACCCTCAATCCGGTCCGATCTT
14393993 AGACTAGGAATGAACTCCGTATACCTAAGCCAAACGACAAAACGAGCGGGCGGGCACTACGCCGG
131 AGACTAGGAATGAACTCCGTATACCTAAGCCAAACGACAAAACGAGCGGGCGGGCACTACGCCGG
* * *
14394058 TCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCATATCTTCA
196 CCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCATACCTTCA
* *
14394123 TATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
261 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCA
* * * *
14394188 CGTGAAGTTTCATGGCACGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
326 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTT
* *
14394253 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCCAACTTGGTAGACGTGATCCTTGTA
391 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
14394318 TTTTTTTTGGCATGCGCAAAAAAAATCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATT
456 TTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATT
* *
14394383 CGAAAAAAGTGACCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
521 CGAAAAAAGTGACCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
** * *
14394448 TGCTCTTTAAGGGGGTGTCAGTTCTTGAGGTTTGATGCGGGATTGGGGGCCAATATAAGGGCCAA
586 TGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
*
14394513 GTACCAGTACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCA
651 GTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCA
* * * * *
14394578 GTGCCGCCGGTCAGGTTCTCCGACGATTCTCCGACGATTCTCCGGCGATTGTGCCCCGATGAAGA
716 ATGCCGCCGGTCA-------C-ACGATTCTCCGACGATGCTCAGGCGATGGTGCCCCGACGAAGA
* * * *
14394643 AAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCCGGTCTGAT
773 AAAATGCAGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * *
14394708 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAACGAACTCCGTATGCCTAAG
838 CTTAGACTGGGAATGAACTCCATATGCCTAGA---GG-ACCAAC-CCGTA--CCGAAA
* * * * * *
14394766 TCAACCCACAAGTCGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGAGGGATGCACAAGTCGAGGA
1 TCAACCCACAAGGCGAGCGAGCGGGCACTCAGCCGGCCAAAGGAGAAGGATGCACAAGCCGAGGA
* * *
14394831 TCGATCGGGTCTCCCTCTGCATGTTGCAGATCCTGCTGCCGCAACCCTCAATCTGGTTCGATCTT
66 TCGATCGGGTCTCCCTCTGCATGTTGCAGATCCTACTGCCGCAACCCTCAATCCGGTCCGATCTT
*
14394896 AGACTAGGAATGAACTCCGTATACCTAAGCCAATCGACAAAAGGAGCGAGCGGGCAGGCGGGCGG
131 AGACTAGGAATGAACTCCGTATACCTAAGCCAAACGAC--AA--A---A-C--G-A-GCGGGCGG
* * *
14394961 GCACTACGTCTGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
184 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTA
14395026 GGCATACCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCC
249 GGCATACCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCC
* *
14395091 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCGAAA
314 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAA
*
14395156 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
379 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
14395221 GTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
444 GTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAAATCGAAGTGTACAAGA
* *
14395286 TTTTGTGACCATTCGAAAAAAGTGACCCCATTTCAAACACTTTAATTGCTACTGGCGGCAAACCT
508 TTTTGTGACCATTCGAAAAAAGTGACCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
*
14395351 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
573 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
**
14395416 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCACA-CCCCCCGGCCCCCCCGAT
638 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGAT
* *
14395480 CGTCGGAACGCCAATGCCGCCGGTCA-A-G-TTCTCTGACGATGCTCAGGCGATGGTGCCCCGAC
703 CGTCGGAACCCCAATGCCGCCGGTCACACGATTCTCCGACGATGCTCAGGCGATGGTGCCCCGAC
* *
14395542 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAAG-ATGTGCTGCCACAACCCTCGGTCTGG
768 GAAGAAAAATGCAGCACCAGCACATGCCCGAGC-CAAGCATGTGCTGCCACAACCCTCGGTCCGG
* *
14395606 TCCGATCTTAGATTGGGAATGAACTCCGTATGCCTA
832 TCCGATCTTAGACTGGGAATGAACTCCATATGCCTA
14395642 AGCCAACCGA
Statistics
Matches: 799, Mismatches: 63, Indels: 27
0.90 0.07 0.03
Matches are distributed among these distances:
903 153 0.19
904 116 0.15
905 6 0.01
906 1 0.00
907 1 0.00
910 1 0.00
911 1 0.00
913 1 0.00
914 1 0.00
915 305 0.38
916 213 0.27
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
TCAACCCACAAGGCGAGCGAGCGGGCACTCAGCCGGCCAAAGGAGAAGGATGCACAAGCCGAGGA
TCGATCGGGTCTCCCTCTGCATGTTGCAGATCCTACTGCCGCAACCCTCAATCCGGTCCGATCTT
AGACTAGGAATGAACTCCGTATACCTAAGCCAAACGACAAAACGAGCGGGCGGGCACTACGCCGG
CCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCATACCTTCA
TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTT
CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATT
CGAAAAAAGTGACCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCA
ATGCCGCCGGTCACACGATTCTCCGACGATGCTCAGGCGATGGTGCCCCGACGAAGAAAAATGCA
GCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCATATGCCTAGAGGACCAACCCGTACCGAAA
Found at i:14396241 original size:719 final size:719
Alignment explanation
Indices: 14394864--14396357 Score: 2342
Period size: 719 Copynumber: 2.1 Consensus size: 719
14394854 TTGCAGATCC
** * * *
14394864 TGCTGCCGCAACCCTCAATCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14394929 TCGACAAAAGGAGCGAGCGGGCAGGCGGGCGGGCACTACGTCTGCCAGAGAGACGGGATGCGCAA
66 CCGACAAAAGGAACGAGCGGGCAGGCGAGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAA
* **
14394994 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCATACCTTCATATTTCTGTGTGCCAATGCCA
131 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCA
*
14395059 TTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATAGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
14395124 GACTCGTTTTTTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACCATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
** *
14395189 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAA
326 CAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAA
14395254 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGACCCCATTT
391 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGACCCCATTT
* * * * *
14395319 CAAACACTTTAATTGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
456 CAAACACTTTAATAGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCACTTTAAGGGGGTATGA
* *
14395384 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACA
521 GTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
14395449 TCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACGCCAATGCCGCCGGTCAAGTTCTCT
586 ACATATGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCC
*
14395514 GACGATGCTCAGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAA
651 GACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAA
*
14395579 GATG
716 CATG
* *
14395583 TGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14395648 CCGACGAAATGAACGGGCGGGCGGGCGAGCGGGCATTACGTCGGCCAGAGAGACAGGATGCGCAA
66 CCGACAAAAGGAACGAGCGGGCAGGCGAGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAA
* *
14395713 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
131 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCA
*
14395778 TTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATAGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
14395843 GACTCGTTTTCTATTTTTCACCATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACCATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
14395908 CAGAAGGGGTTTTGGTACCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGTATGCACAAA
326 CAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAA
* * * *
14395972 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTT
391 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGACCCCATTT
14396037 CAAACACTTTAATAGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCACTTTAAGGGGGTATGA
456 CAAACACTTTAATAGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCACTTTAAGGGGGTATGA
* **
14396102 GTTGTTGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
521 GTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
14396167 ACATATGCGCACACCCCCCCGGCCCCTCTGATTGTCGGAACCCCAATGCCGTCGGTTAGGTTCTC
586 ACATATGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTC
* * * *
14396232 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCTCCAGCACATGCCCGAGCCCA
650 CGACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACA
14396297 ACATG
715 ACATG
* * * *
14396302 TGCTGCTGTAACCCTCGGTCGGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14396358 TTATACTGGG
Statistics
Matches: 702, Mismatches: 72, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
718 210 0.30
719 492 0.70
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (719 bp):
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAAGGAACGAGCGGGCAGGCGAGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAA
GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATAGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACCATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
CAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAA
AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGACCCCATTT
CAAACACTTTAATAGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCACTTTAAGGGGGTATGA
GTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
ACATATGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCC
GACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAA
CATG
Found at i:14396367 original size:26 final size:26
Alignment explanation
Indices: 14396331--14396383 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14396321 CGGGTCCAAT
14396331 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14396357 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14396383 C
1 C
14396384 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14397265 original size:26 final size:26
Alignment explanation
Indices: 14397214--14397266 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14397204 CCGGTCTGAT
*
14397214 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14397240 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14397266 C
1 C
14397267 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.