Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 78 of 131
Found at i:14399819 original size:26 final size:26
Alignment explanation
Indices: 14399787--14399837 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14399777 TGGTATGATC
14399787 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
14399813 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14399838 CCTAACTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:14400680 original size:26 final size:26
Alignment explanation
Indices: 14400651--14400703 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14400641 CTGGTCCGAT
* *
14400651 CTTAGGCTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14400677 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14400703 C
1 C
14400704 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14401590 original size:26 final size:26
Alignment explanation
Indices: 14401550--14401602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14401540 CCAGTCTGAT
*
14401550 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGCAATGAACTACGTATG
*
14401576 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTACGTATG
14401602 C
1 C
14401603 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTACGTATG
Found at i:14402307 original size:904 final size:897
Alignment explanation
Indices: 14399994--14403581 Score: 4911
Period size: 898 Copynumber: 4.0 Consensus size: 897
14399984 GAGCAGGAGG
* * * *
14399994 GCGGGCGGGCACTATGTCGGCCAGAGAGACAGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
14400059 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
14400124 AATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * *
14400189 TTTTGAAACTTTTTATGGTT-TAGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAAC
196 TTTTGAAACTTTTTACAGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * * *
14400253 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAACTTCAGCTAAGAACCCAAAGT
260 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
14400318 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
325 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCA
* *
14400383 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATAAGGGATA
390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
14400448 GGGGCCCAATATAAGGGCCAAGTACCAGCACCCATTGCATATCATGTGCGCACACCCCCCGG-CC
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * * ** *
14400512 CCCTGATCGCCGGAACCCCAATGCCATCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
520 CCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
* * * *
14400577 C-AGCGAAGAAAAATGTGTCACCAGCACATGGCCGAGCCCAACATGTGCTGCCGCAACCCTCAGT
585 CGA-CGAAGAAAAATGCGGCACCAGCACAT-GCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * *
14400641 CTGGTCCGATCTTAGGCTTGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
648 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCT
* ** * *
14400706 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGTGGGATGCGCAAGCCGG
713 AAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * *
14400771 GGATCGGTCAGGTCTCCCTCTGCATGCTGCCGATCTTGCTACTGCAACCTTCAG-CTCGGT-TCA
778 AGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCT-GGTCT-A
* * *
14400834 ATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGATGGAACA-AGTGGGC
841 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGTGGGC
* * * *
14400890 GGGCGGGCGGGCACTACACCGGCCAGAGATACGGGATGTGCAAGCCGTGGATCGAAAGGGTGGTA
1 --GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
14400955 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAAACAATTTTTATGGCTTGTAAATTCAT
64 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
14401020 ACAATTGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAG
129 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
14401085 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAA
194 ATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
14401150 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAG
259 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
14401215 TGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATAGCTGCTGGC
324 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGC
* *
14401280 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGATTGATGAGGGAT
389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
14401345 AGGGGGCCAATATAAGGGCCAAGTTCCAGCAGCCATTGCACATCATGTGCGCACACCCCCCGACC
454 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* *
14401410 CCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCC
519 CCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * * * *
14401475 CCGATGAAGAAAAATACGGCACCAACACACGTCCGAGCCCAGCATGTACTGCCGTAACCCTCGGT
584 CCGACGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
14401540 CCAGTCTGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTGGCAATGAACTCCGTATGCCT
648 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCT
* * **
14401605 AAGACAACCCATGAAAAGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATATGCAAGCCGG
713 AAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * *
14401670 AGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
778 AGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTAAT
*
14401735 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTAGGTGGGC
843 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AG-A-GTGGGC
* * *
14401793 AAGCGGGCGGGCACTACGCCGGCCAGAAAGTCGGGATGCGCAAGCCGTAGATCGATAGGGTGGTA
1 --GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
14401858 GGTGGGTTTAAGCATATCTTCATATTTCTGTGTGCCAATGCCATCTTTATGGCTTGTAAATTCAT
64 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
14401923 ACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATG
129 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
**
14401988 ATTTTTGAAACTTTTTGTAGTTCGAGATTTTTTGAAAATTTCTTT-GGAAGGAGTTTTGGCCCCA
194 ATTTTTGAAACTTTTTACAGTTCGAGATTTTTT-AAAATTT-TTTCGGAAGGAGTTTTGGCCCCA
* * *
14402052 AACTTGGTAGACATGATCCTCGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTCGA
257 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
14402117 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTTAGACACTTTAATGGCTACTG
322 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTG
* * *
14402182 GCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAG
387 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * * * * *
14402247 ATAGGGGGCCAACACAAGGGCCAAGTACCGGCACTCATCGCGCATCAAGTGCGTACACCCCCCGG
452 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * * *
14402312 CCCTCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTA
517 CCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* *
14402377 CCCCGACGAAAAAAAATGCGGCACCAGCACATGCCCGA-CCTCAGCATGTGCTGCCGCAGCCCTC
582 CCCCGACGAAGAAAAATGCGGCACCAGCACATG-CCGAGCC-CAGCATGTGCTGCCGCAACCCTC
* * * *
14402441 GGTCCGGTCTGATCTTAGATTGGGAATCAACTCTGTATGCTTAGACTGGGAATGAATTCCATATG
645 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATG
* * * * ** * *
14402506 CCTAAGTCAACCTACGAAACGAGCTTGCGGGCGCTCAGCTAGCCAAAGGGGCGGGATGCGTAAGC
710 CCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * *
14402571 C-GAGGATCGGTCGGGGTCACCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACTCTCGGTCTGGT
775 CGGA-GATCGG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGT
* * * * * *
14402635 CTGATCTTAGACTGGTAATGAACTCCGTATGCCTAACCCGACCGACAAAAC-GAG-CGG-
838 CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGTGGGC
* * *
14402692 GCGGGCGGGCACTACGCCAGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
14402757 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * * *
14402822 AATGGTCCCATAAGCCTCCATGTGAAGTTTCATGGCAATACAATTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
14402887 TTTTGAAACTTTTTACAGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGGCCCCAAAC
196 TTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAAC
* * * * * * *
14402952 TTGGTAGACGTCATCCATGTATTTTTTTTGGCATGAACAAAAAAATTTAGCTAAAAACTCGAACT
260 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
14403017 GTACAAGATTTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTGGC
325 GTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGC
* * * *
14403082 AGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGCTGTGAGTTCTCAACGG-TTAATGAGGGA
389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGA
* *
14403145 TAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCTCGG
453 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG
* * * * *
14403210 CCCCCCCGATCGACGGAACCCCAATGCCGCCTGTCAGGTTCTCCGACGATGCTCCGGTGACGGTG
517 CCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
** * * * * *
14403275 CCCCGGTGAAGAAAAATGCGCCACCAGCACATGCCTGGGCCTAGCATGTGCTGTCGCAACCCTTG
582 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAACCCTCG
*
14403340 GTCCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
646 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
* ** *
14403405 CTAAGTCAACCCAC-AAAATGAGCGTGCGGGCTCTCAATTGGCCAGAGGGGCGGGATGCGCAAGT
711 CTAAGTCAACCCACGAAAA-GAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * * * *
14403469 CGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGGTGCCTCAACCCTCAGTCTGGTCT
775 CGGAGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCT
* *
14403534 AATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAA
840 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
14403582 TGAACGGGGT
Statistics
Matches: 2366, Mismatches: 300, Indels: 49
0.87 0.11 0.02
Matches are distributed among these distances:
895 3 0.00
896 14 0.01
897 449 0.19
898 782 0.33
899 315 0.13
900 7 0.00
901 1 0.00
902 2 0.00
903 215 0.09
904 483 0.20
905 95 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAG
TCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGAGA
TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTAATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGTGGGC
Found at i:14403382 original size:26 final size:26
Alignment explanation
Indices: 14403352--14403404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14403342 CCGGTCTGAT
* *
14403352 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14403378 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14403404 C
1 C
14403405 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14410232 original size:26 final size:26
Alignment explanation
Indices: 14410203--14410255 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14410193 CCAGTCTGAT
*
14410203 CTTAGACTAAGAATGACCTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
* *
14410229 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
14410255 C
1 C
14410256 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:14411136 original size:25 final size:26
Alignment explanation
Indices: 14411093--14411144 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
14411083 CCAGTCTGAC
14411093 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
14411119 CTTAGATT-GGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
14411144 C
1 C
14411145 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:14412456 original size:905 final size:900
Alignment explanation
Indices: 14409335--14415724 Score: 6440
Period size: 890 Copynumber: 7.2 Consensus size: 900
14409325 CCAGTCCAAT
* * * * *
14409335 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACTAGCGTACAGGCGCCCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * *
14409400 CGGCCAGAGGGGCGGGATGC-CAAGCCGAGGATCGGCCGGGTCCCTCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * *
14409464 TGCTACTGCAACCCTT-GCTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
131 TGCTGCCGCAA-CCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCA
* * * * * *
14409528 ATCGACGAAATGA-GG-GGGTGGGCGGGTGGGCACTACACCGGCCAGAGAGACGGGATGCGAAAG
195 ACCGACGAAACGAGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * **
14409591 CTGTGGATCGATAGGGTGATTGGTGGGTTTAGGCACATATTCATAATTCTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
* * * * *
14409656 TTTTATGGCTTGTAAATTCGTCCAATGGTCCCTTAAGCCTTCGA-GTGAAGGTTCATGGCAGGAA
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAGTTTCATGGCAAGAC
*
14409720 GACACGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
389 GACA-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
14409785 CGAAAGAAGTTTTGCCCCCAAACTTAGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14409850 ACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
14409915 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14409980 TTCTCGAGGTTTGATGAGGGATAGGAGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
14410045 CATGTGCGCACAACCCCC-GGCCCCCCAATCG-CAGGAA---CAACGCCGCCGGTCAGGTTCTCC
713 CATGTGCGCACACCCCCCAGCCCCCCCGATCGTC-GGAACCCCAATGCCGCTGATCAGGTTCTCC
** *
14410105 GGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGGCCGAGCCCAG
777 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* ** ** *
14410170 CATGTGCTGTCGCAACCCTCACTCCAGTCTGATCTTAGACTAAGAATGACCTCCGTATG
842 CATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14410229 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTG-TGGTCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG-CGCTCAG
* * * * * * * * *
14410293 CCTGCCAGA-GGGCGGTATGCGTAAGCTGAGGATCGATCTGTTCCCCCTCTGCATGCTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * *
14410357 CTACTATCGTAA-CTCTCGGTTCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCC
130 CTGCTGCCGCAACCT-TCGGTCCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCC
* * * * ** *
14410421 AACTGACGAAATGA------GTGGGCGGGCGGGCACTACGTCGGCTTGAGAGACGGGATGCGTAA
194 AACCGACGAAACGAGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
14410480 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
* * *
14410545 TTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAAAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * * *
14410610 AACACGTTTTCTATTTTTCACGATTGTCGAAACCTTTTACAGTTCGAGAGTTTTTAAAATTTTTA
389 GACA-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
14410675 CGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
14410740 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14410805 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14410870 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** ** * *
14410935 CATGTGCGCACA-CCCCCAGCCCCCCCAATCGTC-GAA--AGAACACCG-TCGGTAAGGTTCTCC
713 CATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCT-GATCAGGTTCTCC
* * * ** * * *
14410995 GGCGATGCTCCGGCAATGGTGCCCCGGTGAAGAAAAATGCGGCACTAGCACATGCTCGAGCCTAG
777 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
14411060 CATGCGCTGCCGCAACCCTCGCTCCAGTCTGACCTTAGATTGGGAATGAACTCCGTATG
842 CATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14411119 CTTAGA-TTGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACTAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * * * * *
14411183 TGGCCAAAAGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCTCTCTACGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * ** * **
14411248 TGCTGCTGCAAACC-TCACTCTGGTCCAATCTTAGACTGGGAATGAACTCAATATGCCTAAGCCA
131 TGCTGCCGC-AACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCA
* * * * *
14411312 ATCGACAAAACGA--GTGGGTGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGAGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * **
14411375 CCGTGGATCGATAGGGTGGTAGGTGGGTATAGGCACATCTCCATAATTT-TGCATGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGTGTGCCAATGCCA
* *
14411439 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAA
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
14411504 GACACGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
389 GACA-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * **
14411569 CGAAAGAAGTTTTACCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14411634 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14411699 AGACACTCTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14411764 TTCTC-AGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
14411828 CATGTGCGCACAATCCCCCCCAGCCCCCCCGATTGTCGGAACCCCAATGCCGCTGATCAGGTTCT
713 CATGTGCGCAC-A--CCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGATCAGGTTCT
* * * * * **
14411893 CCAGTGATGCTCCGATGATGGAGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCGT
775 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** * * * * *
14411958 AAAATCTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACACCATATG
840 AGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14412019 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
14412084 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCTCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
14412149 TGCTGCCACAACCTTCGGTCCGGTCTGATCTTAGACTAGGAATGAAATCCGTATGCTTAAGCCAA
131 TGCTGCCGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCAA
* * *
14412214 CCGACAAAACGAACGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCGA
196 CCGACGAAACG-A-GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
14412279 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATTCCT
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
*
14412344 TTTTTATGGCTT-TAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGA
324 TTTTTATGGCTTGT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14412408 CGACCAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
388 CGA-CAGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
** ** * * *
14412473 TCGGAAGGAGTTTTGGTGCCAAACCCGGTAAACATGATCCTTGTATTTTTTTTGGCATGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14412538 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14412603 TAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14412668 GTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14412733 TCATGTGTGCACA-CCCCCTGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTC
712 TCATGTGCGCACACCCCCCAG-CCCCCCCGATCGTCGGAACCCCAATGCCGCTGATCAGGTTCTC
** ** *
14412797 CGACGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
776 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
14412862 GCATGTGCTGCGGCAACCCTCGGTTC-GATCCGATTCTTAGACTGGGAATGAAATCCGTATG
841 GCATGTGCTGCCGCAACCCTCGGTCCAG-TCTGA-TCTTAGACTGGGAATGAACTCCGTATG
* **** ** ** * * * * *
14412923 CTAAGTCAACCCACAAAAAAC-CAGCGT-T-CCTCGGT--GCGCTC-AACCGACCAGATGGC-GG
1 CTTAG---ACTGGGAATGAACTC--CGTATGCCTAAGTCAACCCACGAAACGAGC-G-T-GCAGG
* ** * * * * *
14412981 -G-TAATG--GGCC-G-GGGG-GGGGGGC-CAAAGCCCAAGGATTGGCTAGGTTCCCCCTCTGCT
58 CGCTCA-GCCGGCCAGAGGGGCGGGATGCGC-AAG-CCGAGGATCGG-TCGGGTCCCCCTCTGCG
* * * *
14413038 TGCTACGGATCCTGCTG-CGCAACC-TCAGTCCGATC--ATTCTTAGACT-GGAATG--AT-CGT
119 TGCTGCCGATCCTGCTGCCGCAACCTTCGGTCCGGTCTGA-TCTTAGACTGGGAATGAAATCCGT
** *
14413095 ATG-CT-AGCCCAATTGTACGAAACGCGTGG-GGTGCGAGTGGAGCGGGCGAGCGGCAC-ACGCC
183 ATGCCTAAG-CCAACCG-ACGAAACGAG-GGCGG-GC----GG-GCGGGC--G-GGCACTACGCC
* * * *
14413156 GGCCAG-GATACAGGATGCGCAAGCCGTTGTATCGAAGTAGGGTGTTA-GTGGGTTTAGGCACAT
236 GGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCG-A-TAGGGTGGTAGGTGGGTTTAGGCACAT
*
14413219 CTTCATATTTCTGTGTGCCAATG-CA-TTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGC
298 CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
14413282 CTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
363 CTTCACGTGAAGTTTCATGGCAAGACGAC-AGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
14413347 TGGTTCAAGATTTTTTTAACTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
427 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
14413411 TTTTATTTTTGTTGGCATGCACAAAAAAATTCAGATTAAAACTCGAAGTGTATAAGATTTTGGGA
492 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
14413476 CCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAACTGGCAACAAACCTGTAAAATC
557 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
14413541 TCAAATGCTCTTTAAGGGGTTGTGAGTTTTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
622 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
14413606 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGCCCCCCCGATCG-CTGGAA
687 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTC-GGAA
* **
14413670 CCCCAATGCCG-TCGATCAGGTTCTCCGGTGATGCTCC-AGTGACAGTGCCCCGACGAA-AGAAA
751 CCCCAATGCCGCT-GATCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCCGACGAAGA-AAA
* * * * * *
14413732 ATACGGCTCCAGCACATGCTCGAGCGCAGCATGTGCTACCGTAACCCT---T---G---G----T
813 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTT
14413784 ---CT--G---G---TCCG-AT-
878 AGACTGGGAATGAACTCCGTATG
* ** **
14413794 CTTAGGACTGGGGAATGAACTCCGTAT-TCTAAGTCAAACCCACGAAACGATTGTGCAGTTG-TC
1 CTTA-GACT-GGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCAGGCGCTC
* * * * * *
14413857 A-CTCGGCCA-A--TGC-GGATGCGCAAGCCGATGATCAGTCGAGGTCCCCCGCTG-TTGCTACC
63 AGC-CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCG-GGTCCCCCTCTGCGTGCTGCC
* * * *
14413916 GATCCTGCTGCCGTAACC-TCAGTCCGATCTGATCTTAGATTGGGAATGAAA-CTCGTATATGCC
126 GATCCTGCTGCCGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAAATC-CG--TATGCC
* * *
14413979 GAAGCGAA-CGACGAACACGAGGGCGGCGGGCGTGCGGGCGGGCACTA-GCCGGCCAGAGAGACG
188 TAAGCCAACCGACGAA-ACGA--G-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
14414042 AGATGCGAAAGTCTC-TGGATC-ATA-GGTGGTA-GT-GGTTTAGGAAACATCTTCATATTTCTG
249 GGATGCGCAAG-C-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-CACATCTTCATATTTCTG
*
14414102 TGTGCCAATGCCATTTTTATGG-TTGTAAAATTCATTACAA-GATCCCTTAAAAAGCCTTCACGT
311 TGTGCCAATGCCATTTTTATGGCTTGT-AAATTCA-TACAATGGTCCCTT---AAGCCTTCACGT
* * *
14414165 GAAGATTTCATGGCAAGGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGCAGTTC
371 GAAG-TTTCATGGCAA-GACGAC-AGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* *
14414229 GAGATTTTTCAAAATATTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
433 GAGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
14414293 TCTTTGTTGGCATGCACAAAACAATTCACCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATT
497 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
14414358 TGAAAAAAGTGTCCCCATTGCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
562 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
14414423 TGCTCTTTAAGGGGGTATGAGTGCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCAA
627 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * * *
14414488 GTACCAGCACCCATCGCACATCAAGTGCGTACACCCCTCCCGACCCCCCCGATTGTTGGATCCCC
692 GTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCAG-CCCCCCCGATCGTCGGAACCCC
* * * *
14414553 AA------T-A-C-CG---TCC---GA---T---A--AT-GTG-CCCTAGTGAAGAAAAATGCGA
755 AATGCCGCTGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGG
* * ** * *
14414593 CACCAGCACACGCCAGAGCCCAGCATGTGCTGTTGTAACCCTCGGTCC-GATCCGATCTTAGACT
819 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCTGATCTTAGACT
*
14414657 GGGAATGAACTCCGTATA
883 GGGAATGAACTCCGTATG
* * * *
14414675 CTTAGACTGGGAATGAACTTCGTATGCGTAAGTCAACCCACAAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * **
14414740 CGGCCAGAGGGGTGGGATGCACAATCCGGGGATCGGTCGGGGCCCCCTCTGCGTGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * *
14414805 TGCTGCCGCAACCCTCGGT-CGGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
131 TGCTGCCGCAACCTTCGGTCCGG-TCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCA
* ** ** * * * **
14414869 ACTGACGAAACGA--GCGGGCGGGCGGGTTGGCACTATACCGGCCAGAAAAATGGGATGCATAAG
195 ACCGACGAAACGAGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
14414932 CCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCCTCATA------T-TGCACAAT----
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC-CAATGCCA
* * * * * *** *
14414986 TTTTTAT--TTTGCGTAAGA--C-GAC--TCGT--TTTCTATTTTTCAC---AA-TTT--TTG--
324 TTTTTATGGCTT--GTAA-ATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCA
* * * * ** ** **
14415034 A-A--AC-TTTTTGTGGTTTGAT-A-TTTTTTAAAATTTT--T----TT---G----------A-
385 AGACGACAGTTTTCT-ATTT-TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * *
14415073 --------AAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTGTTGTTGGCATGCA
448 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
14415130 CAAAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTTA-CATTTGAAAAAAGTGTCCCC
513 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14415194 ATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
578 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
14415259 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGG-CAAGAACCAGCGCTCATCG
643 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
14415323 CATATCATGTGCG--CA-----CA--CCCCCCGATCGTCGGAACCCCAATGTCG-TCGGTCAGGT
708 CACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCT-GATCAGGT
* * * *
14415378 TCTCCGGTGATGCTCCGACGATGGTGCCTCGACGAAGAGAAATACGGCACCAGCACATGCCTGAG
772 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *** *
14415443 CCCAGCATGTGCT-ACGACAACCCTCGGTTTGGT-TCGATCTTAGATTGGGAATGAACTCCGTAT
837 CCCAGCATGTGCTGCCG-CAACCCTCGGTCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTAT
14415506 G
900 G
* * * * *
14415507 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
14415572 TGGCCAGAGGGGTGGGATACGTGAA-CCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCG-CAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** ** * ** **
14415636 CTGCTGTCGCAACCCTT-GGTCTGGTCCAATCTTAGACTCCGAATGAACTTTGTATGCCTAATTC
130 CTGCTGCCGCAA-CCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCC
*
14415700 AACCCACGAAACGAGCGTGCGGGCG
194 AACCGACGAAACGAG-G-GCGGGCG
14415725 CTCAACCGGC
Statistics
Matches: 4648, Mismatches: 632, Indels: 490
0.81 0.11 0.08
Matches are distributed among these distances:
808 20 0.00
811 1 0.00
813 1 0.00
816 1 0.00
817 3 0.00
819 27 0.01
820 128 0.03
821 91 0.02
823 2 0.00
826 1 0.00
829 1 0.00
830 1 0.00
831 3 0.00
832 251 0.05
833 11 0.00
836 7 0.00
840 1 0.00
843 2 0.00
847 1 0.00
848 5 0.00
849 11 0.00
850 3 0.00
852 1 0.00
854 5 0.00
855 47 0.01
856 4 0.00
858 4 0.00
859 1 0.00
860 3 0.00
861 1 0.00
863 6 0.00
864 3 0.00
865 2 0.00
867 4 0.00
868 3 0.00
869 13 0.00
870 49 0.01
871 45 0.01
872 65 0.01
873 47 0.01
874 41 0.01
875 22 0.00
876 50 0.01
877 286 0.06
878 34 0.01
879 91 0.02
880 31 0.01
881 27 0.01
882 10 0.00
883 27 0.01
884 50 0.01
885 26 0.01
889 64 0.01
890 709 0.15
891 3 0.00
892 8 0.00
893 93 0.02
894 569 0.12
895 7 0.00
897 31 0.01
898 369 0.08
899 152 0.03
900 163 0.04
901 239 0.05
902 21 0.00
903 123 0.03
904 37 0.01
905 402 0.09
906 77 0.02
907 8 0.00
908 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCAA
CCGACGAAACGAGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CAGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGATCAGGTTCTCCGGTG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14414678 original size:26 final size:26
Alignment explanation
Indices: 14414649--14414699 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14414639 CCGATCCGAT
14414649 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
14414675 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14414700 GCGTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:14415519 original size:26 final size:26
Alignment explanation
Indices: 14415481--14415533 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14415471 TTGGTTCGAT
* *
14415481 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14415507 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14415533 C
1 C
14415534 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14415799 original size:159 final size:159
Alignment explanation
Indices: 14415507--14415883 Score: 416
Period size: 159 Copynumber: 2.4 Consensus size: 159
14415497 ACTCCGTATG
* * **
14415507 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGTTCAGT
1 CTTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAAC
* * * * * * *
14415572 TGGCCAGAGGGGTGGGATACGTGAACCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATACGTAAACCGGAGATCAGTCGGGTCCCCCTCAGCGTGCTACCGATAC
** * * *
14415637 TGCTGTCGCAACCCTTGGTCTGGTCCAAT
131 TGCTACCGCAACACTCGGTCTGATCCAAT
* ** * *
14415666 CTTAGACTCCGAATGAACTTTGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAAC
* * * *
14415731 CGGCCAGAGGGGCGGGATGCG-AAAGTCGGAGATCAGTCGGGTCCCCCTCTGCGTGCTATCGATA
66 CGGCCAGAGGGGCGGGATACGTAAA-CCGGAGATCAGTCGGGTCCCCCTCAGCGTGCTACCGATA
*
14415795 CTGCTACCGCAGCACTCGGTCTGATCCAAT
130 CTGCTACCGCAACACTCGGTCTGATCCAAT
* ** * * * * *
14415825 CTTAGAATGGGAATGAACTCCATATGCCTAAG-CTAACCGACGAAATGAACGGGCGGGCG
1 CTTAGACTACGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGACCGTGCGGGCG
14415884 GGCATTACGC
Statistics
Matches: 179, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
158 3 0.02
159 176 0.98
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (159 bp):
CTTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAAC
CGGCCAGAGGGGCGGGATACGTAAACCGGAGATCAGTCGGGTCCCCCTCAGCGTGCTACCGATAC
TGCTACCGCAACACTCGGTCTGATCCAAT
Found at i:14417451 original size:26 final size:26
Alignment explanation
Indices: 14417415--14417467 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14417405 CCGGTCCGAT
*
14417415 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
* *
14417441 CTTAGATTGGGAATGATCTCCGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
14417467 C
1 C
14417468 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGAGTGGGAATGAACTCCGTATG
Found at i:14419890 original size:899 final size:867
Alignment explanation
Indices: 14415645--14420920 Score: 5953
Period size: 880 Copynumber: 6.0 Consensus size: 867
14415635 CCTGCTGTCG
* ** * ** ** * *
14415645 CAACCCTTGGTCTGGTCCAATCTTAGACTCCGAATGAACTTTGTATGCCTAATTCAACCCACGAA
1 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * *
14415710 ACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGAAAGTC-GGAGATC-AGTCGGGT
66 ATGAGCGTGCGGGCGCTCAGCCGGCCA-AGGGGCGGGATGCGCAAG-CAGG-GATCGA-TCGGGT
* * * * * * * * * *
14415773 CCCCCTCTGCGTGCT-ATCGATACTGCTACCGCAGCACTCGGTCTGATCCA-ATCTTAGAATGGG
127 -CCCCTCTGCGTGCTGCT-AATCCTACTACCGCAACCCTCAGTCCGGT-CAGATCTTAGACTGGG
* * ** * *
14415836 AATGAACTCCATATGCCTAAGCTAACCGACG-AA--A-TGAACGGGCGGGCGGGCATTACGCCGA
189 AATGAACTCCGTATG-CTAAGCAAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGG
* * * * *
14415897 CCAGAGAGACGGGATGCGCTAGTCGTGGACCAATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCA
253 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* **
14415962 TATTCCTGCATGCCAATGCCATTTTCACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
318 TATTTCTGCATGCCAATGCCATTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * ** * *
14416027 CGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTT
382 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATT
* **
14416092 CGGGATTTTTCAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
447 CGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
14416157 TTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
512 -TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
14416222 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
576 TTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GTAGCAAACCTGTAAAATCTCAA
* * * ** *
14416287 ATGCTTTTTAAGGTGGTGTTAGTTCTTGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCA
640 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * ** *
14416352 AGTACCAGCACCCATCACACATCATGTGCGCATACCCCCCTGGCCCCCCCGATCGCCAGAACCCT
705 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCAGATCGCTGGAACCCC
* * ** *
14416417 AATGCCGTTGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGGGAAGAAAAATGTGAC
769 AATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCG-CGATGGTGCCCCGGCGAAGAAAAATGTGAC
* * * *
14416482 ACCAGCACATGCCCGA-GCCCAGCATGTGCTGCCG
833 ACCAGCACATGCTCGAGGCCTACCATGTGCTGCCA
* ** * *
14416516 TAACGTTCTGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 CAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * *
14416580 AATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTC
65 AATGAGCGTGCGGGCGCTCAGCCGGCCA-AGGGGCGGGATGCGCAAG-CAGGGATCGATCGGGTC
** * * * * * *
14416645 CTCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTC-GATCTGGTCTGATGTTGGACTGGGAA
128 C-CCTCTGCGTGCTGCTAATCCTACTACCGCAACCCTCAG-TCCGGTCAGATCTTAGACTGGGAA
* * * * * * * *
14416709 TGAACTCCATATGCCTAAGCCAACCGACCAAACGAGCAGGCTGGCGGGAGAGCAGGCACTACGTC
191 TGAACTCCGTATG-CTAAGCAAACCGACGAAACGAG--TG--GGCGGGCGGGCGGGCACTACGCC
* *
14416774 GGCCAGAGAGATC-GGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCT
251 GGCCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
14416838 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCT
315 TCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
**
14416903 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCG
379 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCG
* * * ** * *
14416968 GTTCGAGATTTTTTAATATTTTTTCGGAAGAATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
444 ATTCGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
14417033 GTATTTTTGTTGGCATGCACAAAAAAATTCAACTACAAACTCGAAGTGTACAAGATTTTGTGACC
509 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
14417098 ATTTGAAAAAAGTGTCCCC-TTTTCA-TCACTTTAATGGCTACTGGCAACAAACCTGTAAAATCT
574 ATTTGAAAAAAGTGTCCCCATTTT-AGACACTTTAATGGCTACT-GTAGCAAACCTGTAAAATCT
**
14417161 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
637 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
14417226 CCAAGTACCATCGCACATCGCACATCATGTGCGCACAACCCCCCCGGCCCCCTC-GATCGCTGGA
702 CCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCC-CAGATCGCTGGA
* * * *
14417290 ACCCCAATGCCGTCTGTCAGGTTCTCCGATGATGC-CCTGGTGATAGGAT--CCCGGTGAAGAAA
764 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCC--GCGAT-GG-TGCCCCGGCGAAGAAA
** * * ** * *
14417352 AATACGACACCAGCACATGCCCGA-GCCCAGAATGTGCTACCG
825 AATGTGACACCAGCACATGCTCGAGGCCTACCATGTGCTGCCA
* *
14417394 CAACCCTCGATCCGGTCCGATCTTAGAGTGGGAATGAACTTCGTATGCTTAGATTGGGAATGATC
1 CAA-CC-C--T-CGGT-C---C----A----G--T---C--CG-AT-CTTAGACTGGGAATGAAC
* * * ** * * **
14417459 TCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGATCACTTAGCCGGCCAGAGGGGTAGGAT
40 TCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCA-AGGGGCGGGAT
* * * * * * * ** **
14417524 GCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGTGTGCTG-TCGATCCTGCTGCCATAACCCTTG
104 GCGCAAG-CAGGGATCGATCGGGT-CCCCTCTGCGTGCTGCT-AATCCTACTACCGCAACCCTCA
* * * * * * *
14417588 GTTCGGTCCGATGTTAGACTGGCAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGA-----
166 GTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATG-CTAAGCAAACCGACGAAACGAGTGGG
* * * *
14417648 ---GCGGGTGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGT
230 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
14417710 AGGTGGGTTTAGGCACATCTTCATATTAT-TGCATACCAATGCCATTTTTATGGCTTGTGAATTC
295 AGGTGGGTTTAGGCACATCTTCATATT-TCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTC
* *
14417774 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTTTTTTTTC
358 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC-TATTTTTC
** * * * *
14417839 ATAATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTTTGGATGGAGTTTTGGCCC
422 ACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAA-TTTTTTTAGAAGGAGTTTTGGCCC
* *
14417903 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAAAAATTCAGCTAAGAACTC
486 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
14417968 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTAC
551 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
* * *
14418033 TGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
616 T-GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
14418098 GGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
680 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC
* * * * * * * * * **
14418163 CCGACACCCTC-GATCGCTGGAACCCTATTGCTGCCGATCAGGTTTTTCGACGATGCTCCGACGA
743 CCGGC-CCCCCAGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCG-CGA
* * ** * * * * *
14418227 TGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATG-TCCGA-GCCCAGCATGTGCTGTCG
806 TGGTGCCCCGGCGAAGAAAAATGTGACACCAGCACATGCT-CGAGGCCTACCATGTGCTGCCA
* * * *
14418288 CAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATAAA
1 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * * *
14418353 ATGACCATGCGGGCGCTCAGCCGGCC-AGGGGCACAGGATGTGCAAGCCGGGAATCGA-CTGGGT
66 ATGAGCGTGCGGGCGCTCAGCCGGCCAAGGGG--CGGGATGCGCAAGCAGGG-ATCGATC-GGGT
* ** * *
14418416 CCCACTTTGCGTGCTGCCGATCCTACTACCGCAACCCTC-GATCTGGTCCGATCTTAGACTGGGA
127 CCC-CTCTGCGTGCTGCTAATCCTACTACCGCAACCCTCAG-TCCGGTCAGATCTTAGACTGGGA
* * **
14418480 ATG-ACTTCCGTATGCCTAAGCCAACCGACGACATAAGTGGGCGGGCAGGCGGGCGGGCACTACG
190 ATGAAC-TCCGTATG-CTAAGCAAACCGACGAAACGAGTGGGC--G--GGCGGGCGGGCACTACG
14418544 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
249 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
14418609 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
314 TTCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
14418674 TTCACGTGAAGTTTCATGGAAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
378 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
** * * *
14418739 GATTCAAGATTTTTTTAATTTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCT
443 GATTCGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
14418804 TGTATTTTTTTTGGCATGCATAAAAAAAATTCAGCTAAGAACTCAAAGTGTACAAGATTTTGTGA
508 TGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
14418869 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGTTAGCAAACTTGTAAAATC
572 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG-TAGCAAACCTGTAAAATC
*
14418934 TTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
636 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
14418999 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCGGCCCCCAAGATCGATGGA
701 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCAGATCGCTGGA
* *
14419064 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCTGCGATGGTACCCCGGGGAAGAAAAAT
764 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCC-GCGATGGTGCCCCGGCGAAGAAAAAT
*
14419129 GTGACACC-GACACATGCTCGAGGCC-ACCATGTGCTGCCG
828 GTGACACCAG-CACATGCTCGAGGCCTACCATGTGCTGCCA
*
14419168 CAACACTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAAC
1 CAAC-C-C--TC-G----G-TC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATGAAC
* ** * *
14419233 TCCGTATGCCTAAGTTAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCAAAGGGCGGGATG
40 TCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAAGGGGCGGGATG
* *
14419298 CGCAAGTCAGGGATCGATCGGGTCCTCCTCTACGTGCTGCTAATCCTACTACTGCAACCCTCAGT
105 CGCAAG-CAGGGATCGATCGGGTCC-CCTCTGCGTGCTGCTAATCCTACTACCGCAACCCTCAGT
* * *
14419363 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCAAACTGACGAAACGAGTGGGTG
168 CCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGC-TAAGCAAACCGACGAAACGAGTGGGCG
* * * * * *
14419428 GGCGGGCTGGCACTATGTCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTG
232 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
14419493 GTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCGATGCCATTTTATGGCTTTTAAATTCATAC
297 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTATGGCTTGTAAATTCATAC
* *
14419558 AAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
362 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * **
14419623 TTTCAAAACTTTTTACGTTTCGGGATTTTTTAAAATTTTTTCAGAACAAGTTTTGGCCCCAAACT
427 TTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACT
*
14419688 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTG
492 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
14419753 TACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCCACTAGCAG
557 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GTAG
* *
14419818 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAG
621 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * * * * *
14419883 GGGGCCAATATAAGGGCCAAAGTACTAGCACCCATCACACATCTTGTGTGCGCAGCCCCTCGGCC
686 GGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* *
14419948 CCCCCGATCGCTAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
749 CCCCAGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCG-CGATGGTGCC
* * * *
14420013 CCTGCGAAGAAAAATGTGGCACCAGCACATGCCCGA-GCCTAGCATGTGCTGCCA
813 CCGGCGAAGAAAAATGTGACACCAGCACATGCTCGAGGCCTACCATGTGCTGCCA
* * *
14420067 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
** * * *
14420132 ATGAGCGTGCAAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCC
66 ATGAGCGTGCGGGCGCTCAGCCGGCCA-AGGGGCGGGATGCGCAAG-CAGGGATCGATCGGGT-C
* * * * * * * * * *
14420197 CCCTCTGTGTGCCGGTTATCCTGCTGCCACAACCCTCAGTTCGATCAAATCTTAGACT-GGAATG
128 CCCTCTGCGTGCTGCTAATCCTACTACCGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATG
* * * **
14420261 AACTCCGTATAACTAAG-ACAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGTAA
193 AACTCCGTAT-GCTAAGCA-AACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCA
* * * * * *
14420325 GAGAGACAGGATGCGCAAGCCGTGGATCAACAGGTTGGTAGGTGAGTTTAGGCATATCTTCATAT
256 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * ** **
14420390 TTATGCATGCCAATGCCATTTTAACGGCTTGTAAATTCACCCAATTTTCCCTTAAGCCTTCACGT
321 TTCTGCATGCCAATGCCATTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
14420455 GAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
385 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGG
* * *
14420520 GATTTTTTGAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTT
450 GATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
14420585 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
515 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
14420650 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGC
580 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GTAGCAAACCTGTAAAATCTCAAATGC
* *
14420715 TCTTTAAAGGGGTGTGAGTT-TCCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGT
644 TCTTTAAGGGGGTGTGAGTTCT-CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * * *
14420779 GCCAGCACCCATTGCACATCATGTGCGTACACCCCCCGACCCCCCTGATTGCCGGAACCCCAATG
708 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGCTGGAACCCCAATG
** * *
14420844 CCGT-GGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATG-CAGCACC
773 CCGTCGGTCAGGTTCTCCGGTGATGCTCC-GCGATGGTGCCCCGGCGAAGAAAAATGTGA-CACC
14420907 AGCACATGCTCGAG
836 AGCACATGCTCGAG
14420921 CCCAGCATTT
Statistics
Matches: 3803, Mismatches: 458, Indels: 287
0.84 0.10 0.06
Matches are distributed among these distances:
866 5 0.00
867 11 0.00
868 149 0.04
869 2 0.00
870 7 0.00
871 237 0.06
872 39 0.01
873 221 0.06
874 408 0.11
875 6 0.00
877 135 0.04
878 181 0.05
879 363 0.10
880 478 0.13
881 7 0.00
882 2 0.00
883 3 0.00
884 4 0.00
887 1 0.00
888 1 0.00
889 6 0.00
890 4 0.00
891 1 0.00
892 176 0.05
893 162 0.04
894 232 0.06
895 7 0.00
896 1 0.00
897 3 0.00
898 5 0.00
899 275 0.07
900 207 0.05
901 98 0.03
902 2 0.00
903 3 0.00
904 178 0.05
905 108 0.03
906 71 0.02
907 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (867 bp):
CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
ATGAGCGTGCGGGCGCTCAGCCGGCCAAGGGGCGGGATGCGCAAGCAGGGATCGATCGGGTCCCC
TCTGCGTGCTGCTAATCCTACTACCGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAAC
TCCGTATGCTAAGCAAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CATGCCAATGCCATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTT
TTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTTAGACACTTTAATGGCTACTGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGCTGGAACCCCAATGCCGTCGGT
CAGGTTCTCCGGTGATGCTCCGCGATGGTGCCCCGGCGAAGAAAAATGTGACACCAGCACATGCT
CGAGGCCTACCATGTGCTGCCA
Found at i:14421540 original size:26 final size:26
Alignment explanation
Indices: 14421504--14421556 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14421494 CTGGTCCGAT
14421504 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14421530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14421556 C
1 C
14421557 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14422427 original size:26 final size:26
Alignment explanation
Indices: 14422398--14422447 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14422388 CGATCCGATC
14422398 TTAGACTGAGAATGAACTCCGTATAT
1 TTAGACTGAGAATGAACTCCGTATAT
*
14422424 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGAGAATGAACTCCGTAT
14422448 GCCTAAGTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATAT
Found at i:14423965 original size:710 final size:715
Alignment explanation
Indices: 14422561--14424004 Score: 2152
Period size: 710 Copynumber: 2.0 Consensus size: 715
14422551 TCAAACTAGA
14422561 AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGCGGTCGAGCGCTACG
1 AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGC-GG-AGGCGGGCGG-CGAGCGCTACG
14422626 CCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
63 CCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** * *
14422691 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCC
128 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCC
* * * * *
14422756 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTAC
193 ATCACGTCAAGTTTCACGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTAC
* *
14422821 GGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
258 GGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
14422886 TGTATTTTTGTTGGCACGCACAAAAAATTTGATCTAAAAACTAAAAGTGTACAAGATTTTGTGAC
323 TGTATTTTTGTTGGCACGAACAAAAAATTTCAGCTAAAAACTAAAAGTGTACAAGATTTTGTGAC
* * *
14422951 CATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
388 CATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATAT
* * *
14423016 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGG
453 CAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGACAACATAAGGG
* * * *
14423081 CCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCTCGGCCCCCCCGATCGTCGGAACC
518 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACC
** * *
14423146 CCAATGCCGCAGGTTTGGTTCTGTGGCGATGCTTCAGCGATGGTGCCCCGGCGAAGAAAAATGTG
583 CCAATGCCGCAGGTCAGGTTCTCTGGCGATGCTTCAGCGATGGTGCCCCGGCGAAGAAAAATGCG
* ** * * *
14423211 ACACCAGCACATGCTTGAGCCCAGTATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACT
648 ACACCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACT
14423276 GGG
713 GGG
** *
14423279 AATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC-G-GGCGGGC-G-G-GCGCTACGTCG
1 AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGAGGCGGGCGGCGAGCGCTACGCCG
* * * * *
14423339 GTCAGGGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
66 GCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
14423404 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCATC
131 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCATC
* **
14423469 CCGTCAAGTTTCACGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGT
196 ACGTCAAGTTTCACGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGT
*
14423534 TCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
261 TCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
** **
14423599 ATTTTTGTTGGCATTAACAAAAACA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
326 ATTTTTGTTGGCACGAACAAAAA-ATTTCAGCTAAAAACTAAAAGTGTACAAGATTTTGTGACCA
* *
14423663 TTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGG-TGACTGGCATCAAACTTGTAAAATATC
390 TTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCT-ACTGGCAGCAAACCTGTAAAATATC
* *
14423727 AAAAGCTCTTTAA-GGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGC
454 AAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGACAACATAAGGGC
* *
14423791 CAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCTGACCCCCCCGATCGCCGGAACC
519 CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GACCCCCCCGATCGCCGGAACC
* * *
14423856 CCAATGCTGCCA-GTCAGGTTCTCTGGCGATGCTTC-GACGATGGTGCCCTGGTGAAGAAAAATG
583 CCAATGCCG-CAGGTCAGGTTCTCTGGCGATGCTTCAG-CGATGGTGCCCCGGCGAAGAAAAATG
* * ** **
14423919 CGGCACCAGCACATACCCGAGCCCAGCATTTGCTGCCGCAACCCTCGATTTGGTTTGATCTTAGA
646 CGACACCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGA
14423984 CTGGG
711 CTGGG
14423989 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
14424005 TTAGACTGGG
Statistics
Matches: 655, Mismatches: 66, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
709 87 0.13
710 518 0.79
711 4 0.01
713 1 0.00
714 7 0.01
716 1 0.00
718 37 0.06
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGAGGCGGGCGGCGAGCGCTACGCCG
GCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCATC
ACGTCAAGTTTCACGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGT
TCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCACGAACAAAAAATTTCAGCTAAAAACTAAAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATATCAA
AAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGACAACATAAGGGCCA
AGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCA
ATGCCGCAGGTCAGGTTCTCTGGCGATGCTTCAGCGATGGTGCCCCGGCGAAGAAAAATGCGACA
CCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
Found at i:14425099 original size:120 final size:120
Alignment explanation
Indices: 14424870--14425092 Score: 340
Period size: 120 Copynumber: 1.9 Consensus size: 120
14424860 ATGCTAAGAC
*
14424870 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAG
* *
14424935 AGGGGCGGGATGCGCAAGTCCAGGATCGATTGGGTCCCCTTCTGCTTGCTTAAAT
66 AGGGGCGGGATGCGCAAGGCCAGGATCGATCGGGTCCCCTTCTGCTTGCTTAAAT
* *
14424990 TGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAG
* * ** *
14425055 GGGGGTGGGATGCGC-AGGCTGGGAATCGGTCGGGTCCC
66 AGGGGCGGGATGCGCAAGGCCAGG-ATCGATCGGGTCCC
14425093 TCTCTGCGTG
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 5 0.05
120 87 0.95
ACGTcount: A:0.21, C:0.26, G:0.35, T:0.19
Consensus pattern (120 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAG
AGGGGCGGGATGCGCAAGGCCAGGATCGATCGGGTCCCCTTCTGCTTGCTTAAAT
Found at i:14425869 original size:26 final size:26
Alignment explanation
Indices: 14425840--14425889 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14425830 ATCCGATTTT
*
14425840 AGACTG-GTAATGAACTCCGTATGCTG
1 AGACTGAG-AATGAACTCCATATGCTG
14425866 AGACTGAGAATGAACTCCATATGC
1 AGACTGAGAATGAACTCCATATGC
14425890 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
AGACTGAGAATGAACTCCATATGCTG
Found at i:14425929 original size:1000 final size:979
Alignment explanation
Indices: 14424001--14425984 Score: 2784
Period size: 1000 Copynumber: 2.0 Consensus size: 979
14423991 TGAACTCCGT
* * * *
14424001 ATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCGCTC
1 ATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* *
14424066 AGCCGGGCAGAGGGGCGGGATGCACAACCTATGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGA
66 AGCCGGCCAGAGGGGCGGGATGCACAACCTAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGA
* * ** *
14424131 TCCTGTTGCCATAACCCTCGGTCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGC
131 TCCTGCTGCCATAACCCTCGGTCGAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
14424196 CAACTAAAAAAACGAGCGGGCGGACACTACGTCGGCCAGAAAGACGGGATACGCAAGCCGTGGAT
196 CAACTAAAAAAACGAGCGGGCAGACACTACGCCGGCCAGAAAGACGGGATACGCAAGCCATGGAT
* * * *
14424261 CGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTCTGCATGTCAATGCCATTCAATGGT
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATACAATGGT
* * * *
14424326 CCCTTAAACCTTTACGTGAAGTTTCACGGTAAGACGACTCATTTTTTATTTTTAATGATTTCTGA
326 CCCTTAAACCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTAATGATTTCTAA
* * ** *
14424391 AACTTTTTACTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAG
391 AACTTTTTACTGTTCGAGATTTTTTAAAATGTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
14424456 ATGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAAG
456 ATGTGATCCTTGTATTTTTGTTGGCAAGCAAAAAAACATTTAGCTAAAAACTCGAAGTGTACAAG
*
14424521 ATTTTGTGACCATTTGAAAAAGGTGTCTCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACC
521 ATTTTGTGACCATTTGAAAAAGGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14424586 TGTAAAATCTCAAATGATCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
586 TGTAAAATCTCAAATGATCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGAGATAGGGGGCC
* * **
14424651 AATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCTGGACCCCCCGAT
651 AACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGACCCCCCGAT
* *
14424716 CGTCGGAACCCTAATGCCGTCGATTAGGTTCTCCAGCGATGGTGCCCCGACGAAGAGAAATGTGG
716 CGTCGGAACCCTAATGCCGTCGATCAGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGG
* * * * *
14424781 CACTAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGATTCGGTCCGATTTTAGATTG
781 CACCAGCAAATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGATCCGATTTTAGACTG
* *
14424846 GTAATGAACTCCATATGCTAAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
846 GTAATGAACTCCATATGCTAAGACTGAGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAA
* * * ** *
14424911 GCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCC-AGGATCGATTGGGTCCCCT
911 GCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG-CCGAGGATCGACCGGGTCCCCC
14424975 TCTGC
975 TCTGC
* * *
14424980 TTGCTTAAATTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTC
1 ATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * ** * * * *
14425045 AGTCGGCCAGGGGGGTGGGATGCGCAGGCT-GGGAATCGGTCGGGTCCCTCTCTGCGTGTTGTCG
66 AGCCGGCCAGAGGGGCGGGATGCACAACCTAGGG-ATCGGCCGGGTCCCCCTCTGCGTGCTGCCG
* * *
14425109 ATCCTGCTGCCGTAACGCTCGGTCCGA-TCCAATGTTAGACTGGGAATGAACTCCGTATGCCTAA
130 ATCCTGCTGCCATAACCCTCGGT-CGAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * * *
14425173 GCTAACTGACGAAACGAGCGGGCAGACACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGG
194 GCCAACTAAAAAAACGAGCGGGCAGACACTACGCCGGCCAGAAAGACGGGATACGCAAGCCATGG
14425238 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC----TG-C-ATGCCA-----AT
* * * *
14425303 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
313 -GC---------CATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCACGGCAAGACGACTCAT
* *
14425368 TTTCTATTTTTCATGATTT-TCAAAACTTTTTAC-GATTCGAGATTTTTTAAAATGTTTTCAGAT
368 TTTCTATTTTTAATGATTTCT-AAAACTTTTTACTG-TTCGAGATTTTTTAAAATGTTTTCAGAA
*
14425431 GGAGTTTTGGCCCCAAACTTGGTAG-TCGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAACAT
431 GGAGTTTTGGCCCCAAACTTGGTAGAT-GTGATCCTTGTATTTTTGTTGGCAAGCAAAAAAACAT
*
14425495 TTAGCTAAAAAGTC-AATGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTC-CCTATTTCAG
495 TTAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCTCC-ATTTCAG
* *
14425558 ACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTT
558 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTAAGTT
14425623 CTCGAGGTTTGATGAGAGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCA
623 CTCGAGGTTTGATGAGAGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
14425688 TGTGCGTACACCCCCCAGCCCCCCCGATCGTCGGAACCCTAATGCCGTC-AGTCAGGTTCTCC-G
688 TGTGCGCACACCCCCCAGACCCCCCGATCGTCGGAACCCTAATGCCGTCGA-TCAGGTTCTCCAG
*
14425751 ACGATGGTGCCCCGACGAAGAAAAATGCT-GCACCAGCAAATGCCTGAGCCCAGCATGTGCTGTT
752 -CGATGGTGCCCCGACGAAGAAAAATG-TGGCACCAGCAAATGCCTGAGCCCAGCATGTGCTGTC
* *
14425815 GTAACCCTCGATCCGATCCGATTTTAGACTGGTAATGAACTCCGTATGCTGAGACTGAGAATGAA
815 GTAACCCTCGATCCGATCCGATTTTAGACTGGTAATGAACTCCATATGCTAAGACTGAGAATGAA
* *
14425880 CTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCTAGAGGGGCAGGA
880 CTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGA
* *
14425945 TGCGTAAGCCGGGGATCGACCGGGTCCCCCTCTGC
945 TGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGC
14425980 ATGCT
1 ATGCT
14425985 GCCGATCCTG
Statistics
Matches: 881, Mismatches: 92, Indels: 43
0.87 0.09 0.04
Matches are distributed among these distances:
978 2 0.00
979 256 0.29
980 2 0.00
983 2 0.00
984 1 0.00
985 5 0.01
990 2 0.00
991 2 0.00
999 11 0.01
1000 597 0.68
1001 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (979 bp):
ATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCACAACCTAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGA
TCCTGCTGCCATAACCCTCGGTCGAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACTAAAAAAACGAGCGGGCAGACACTACGCCGGCCAGAAAGACGGGATACGCAAGCCATGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATACAATGGT
CCCTTAAACCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTAATGATTTCTAA
AACTTTTTACTGTTCGAGATTTTTTAAAATGTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ATGTGATCCTTGTATTTTTGTTGGCAAGCAAAAAAACATTTAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAGGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGATCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGAGATAGGGGGCC
AACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGACCCCCCGAT
CGTCGGAACCCTAATGCCGTCGATCAGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGG
CACCAGCAAATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGATCCGATTTTAGACTG
GTAATGAACTCCATATGCTAAGACTGAGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAA
GCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCT
CTGC
Found at i:14427034 original size:26 final size:26
Alignment explanation
Indices: 14427005--14427057 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14426995 CTGATCCGAT
*
14427005 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14427031 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14427057 C
1 C
14427058 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14428856 original size:902 final size:898
Alignment explanation
Indices: 14427112--14429537 Score: 3450
Period size: 902 Copynumber: 2.7 Consensus size: 898
14427102 AAGGGGTGGG
* * * *
14427112 ATGCGCAAGCCGGGGATC-AGTCGGGTGGTAGGTGTGTTTGGGCACATCTTCATATTTCTACGTG
1 ATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCGTG
*
14427176 CCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCA
65 CCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
14427241 TGGCAAGACGACCCATTTTCTATTTTTCATGCTTTTGGAAAATTTTTACGGTTCGAGATTTTTTA
130 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGG-AAATTTTTATGGTTC-AGATTTTTTA
* * *
14427306 AAATTTTTTTGGAAGAAGTTTTGGCCCCGAACTTGGTAGACGTGATCCTAGTA-TTTTTGTTGGC
193 AAA-TTTTTT-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTTGGC
14427370 ATGCATAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
256 ATGCA-AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
14427435 TCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAG
320 TCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
14427500 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
385 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
14427565 CATCGCACATCATGTGCACACA-CCCCCTGGCCCCCCCGAACGTCAGAACCCCAATGCCGCCGGT
450 CATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCG-CCGAAACCCAATGCCGTCGGT
* *
14427629 CAGGTTCTCCGAAGATGCTCCGGCGATCGTGCCCCGACGAAGAAAAATGCGGCAGCAGCACATG-
514 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA-CAGCACATGC
* * * * *
14427693 CCTGAGGCCAGCATGTCCTGTCGCATCCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
578 CCT-AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
14427758 ATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
642 GTATGCTTAGACGGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGC
* *
14427823 TCAACCGGCCAGAGGGTCGGGATTCGCAAGCCGAAGATCGGTCGGGTCCCCCTCTGCATGCTACC
707 TCAACCGGCCAGAGGGGCGGGATTCGCAAGCCGAAGATCGGTCGGATCCCCCTCTGCATGCTACC
* * *
14427888 AATCCTGCTGCTACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAA
772 AATCCTACTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
14427953 GCCAACCGACGAAACGAGTGAACGGGCGGGCAGGCGGGCACTACTCCGGCCAGAGAGACGAA
837 GCCAACCGACGAAACGAATGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGAA
* *
14428015 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCACATTTCTGTGTGC
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCGTGC
* * * *
14428080 CGATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTGCCTTAGGCCTTCACGTGAAGTTTAAT
66 CAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
14428145 GGCAAGACGACTCATTTTCTATTTTTCATGATTTTGGAAACTTTTTATGGTTCAAGATTTTTTAA
131 GGCAAGACGACTCATTTTCTATTTTTCATGATTTTGGAAA-TTTTTATGGTTC-AGATTTTTTAA
* *
14428210 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCA
194 AATTTTTT-G-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTTGGCA
14428275 TGC-AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
257 TGCAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
14428339 CCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGG
322 CCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* **
14428404 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGATCCAAGTACCAGCACCCA
387 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
14428469 TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGAAACCACAATGCCGTCGATTA
452 TCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGCCGAAACC-CAATGCCGTCGGTCA
* * * *
14428534 GGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAATATGCGGCACTAGCACATGCCC
516 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC-AGCACATGCCC
* * * *
14428599 TAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCAGTCCGATCTTAGACGGGGAATGAACTCCGCA
580 TAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
14428664 TGCTTAGA-GGGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCA
645 TGCTTAGACGGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCA
** * * * *
14428728 ACCGGCCAGAGGGGCGGGATTCGCAAGCCGGGGATCGGTCTTGAT-TCCCTCTGCGTGCTGCCAA
710 ACCGGCCAGAGGGGCGGGATTCGCAAGCCGAAGATCGGTC-GGATCCCCCTCTGCATGCTACCAA
*
14428792 TCCTACTTCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
774 TCCTACTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** **
14428857 CAACCGACGAAACGAATGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGGG
839 CAACCGACGAAACGAATGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGAA
* * *
14428917 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTTTGCGTGC
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCGTGC
*
14428982 CAATGCCATTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
66 CAATGCCA-TTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** * *
14429047 TGGCAAGATGACTTGTTTTTTATTTTTC---A---T-G--A----T-T--TTC-GA------AAC
130 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGGAAATTTTTATGGTTCAGATTTTTTAAA
* *
14429089 A--TTTTG--CG-GTTTTGGCCCCAAACTTGGTAGAGGTGATCCTTGT-TTTTTTGTTGGCATGC
195 ATTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTTGGCATGC
* *
14429148 AAAAAAAAATTCAGCCAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
260 AAAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
**
14429213 CATTTCAGACACTTTAACAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
324 CATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * * *
14429278 TGTAAGTTCTCGAGGATTGATAAGGCATAGGGGGCCAATATAAGGGACAAGTACAAGCACCCATC
389 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** *
14429343 TCACATCATGCACGCACACCCCCCTGG-CCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGG
454 GCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGCCGAAACCC-AATGCCGTCGGTCAGG
* * ** * *
14429407 TTCTCCGACGATGCTCGGGCGATGGTACCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGA
518 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA-CAGCACATGCCCTA
* * * *
14429472 GCCTAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
582 GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
14429537 C
647 C
14429538 CTAAGCCAAC
Statistics
Matches: 1377, Mismatches: 132, Indels: 60
0.88 0.08 0.04
Matches are distributed among these distances:
870 16 0.01
871 184 0.13
872 196 0.14
875 1 0.00
876 4 0.00
878 3 0.00
884 2 0.00
886 3 0.00
888 1 0.00
889 1 0.00
894 1 0.00
896 1 0.00
897 1 0.00
900 1 0.00
902 507 0.37
903 437 0.32
904 18 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCGTGC
CAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
GGCAAGACGACTCATTTTCTATTTTTCATGATTTTGGAAATTTTTATGGTTCAGATTTTTTAAAA
TTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTTGGCATGCA
AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGCCGAAACCCAATGCCGTCGGTCAGGTTC
TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACAGCACATGCCCTAGCCC
AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACGGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCGGC
CAGAGGGGCGGGATTCGCAAGCCGAAGATCGGTCGGATCCCCCTCTGCATGCTACCAATCCTACT
GCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAATGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGAA
Found at i:14430253 original size:26 final size:26
Alignment explanation
Indices: 14430224--14430276 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14430214 CCGATCCGAT
*
14430224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
14430250 CTTAGAATGGGAGTGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14430276 C
1 C
14430277 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14432333 original size:26 final size:26
Alignment explanation
Indices: 14432297--14432347 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14432287 AGTCTGATCC
*
14432297 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
14432323 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14432348 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14433210 original size:26 final size:26
Alignment explanation
Indices: 14433174--14433226 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14433164 CCGGTCCAAT
14433174 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14433200 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14433226 C
1 C
14433227 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14434838 original size:902 final size:900
Alignment explanation
Indices: 14431562--14435664 Score: 5247
Period size: 876 Copynumber: 4.6 Consensus size: 900
14431552 GGTCCAATCT
* * * * * *
14431562 GATCTTAGACCGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAGAGC-GAGAGGGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACTG-GCGGGTGGG
* * * *
14431626 TGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGCGGTAGGT
65 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGT
* *
14431691 GCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACA
130 G-GGTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
14431756 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
194 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
14431821 TTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAA-GTGTTTTGGCCCCAAAC
259 TTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAAC
* * * * *
14431884 TTGGTAGA-TTGATCCCTGTATTTTTTTTGGCACGCACAAAAAATTCAGCTAAAAACATCCAACT
322 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAAC-TCGAAGT
*
14431948 GTACAAGTTTTTGTGACCATTTTG-AAAAAGTGTCCCCCATTTCAGACACTTTAATGGCTAACTG
386 GTACAAGATTTTGTGACCA-TTTGAAAAAAGTGT-CCCCATTTCAGACACTTTAATGGCT-ACTG
14432012 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GCTGGAGTTCTCGAAGGTTTGATTG
448 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-T-GAGTTCTCG-AGGTTTGA-TG
* * *
14432076 AGTGATAGGGGCCCAATATAAGGGCCAAGTTACCAGCACCCATCGTACATCATGTGCGGCACACC
509 AGGGATAGGGGGCCAATATAAGGGCCAAG-TACCAGCACCCATCGCACATCATGTGC-GCACA-C
* ** *
14432141 CCCCCGGATCCCCCCAATCATCGGAACCCCAATCGCCGTCCCGGGTCAGGTTCTCCGACGATGCT
571 CCCCCGG--CCCCCCGATCGCCGGAACCCCAAT-GCCGT--C-GATCAGGTTCTCCGACGATGCT
* ** * * **
14432206 CCGGCGATGGTGCCCCGGGGAAGAAAAATATGGCACCAGCACAAGCCCGAGCGTAGCATGTGCTG
630 CCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
** * * * *
14432271 TCGCAACCCTCGGTCTAGTCTGATCCTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATG
695 TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATG
* * * * *
14432336 AACTCCGTATGCCTAAGTCAACCCAAGAAAAGAGCGTGCGGGTGCTCAACCGGCCAAAGGGGTGA
760 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGA
* * * *
14432401 GATGCGCAAGCCGGGGATCGGTCAGGTCTCCCTCTGTATGCTGTCGATCCTGCTACCACAACCCT
825 GATGCGCAAGCCGAGGATCGGTCAGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCT
* * *
14432466 CAGTCCGGTCT
890 CAGTCTGATCC
* * * *
14432477 GATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCTAACCGATG--A--AACTAGCGGGT----
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACTGGCGGGTGGGC
* * * * *
14432534 GGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
14432599 GGATTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAA
131 GG-TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
14432664 TGGTTCTTTAAGCCTTCACGTGAAGTTTCACGGCAAGACAACTCGTTTTCTATTTTTCACGA-TT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * **
14432728 TTCAAAATGTTTTACGATTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGAACCCAAACTT
260 TTGAAACT-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
*
14432793 GGTAGATGTGATCCTTGTATTTTTTTTGGCATG-----------CA-C-AAAAACTCGAAGTGTA
324 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
14432845 CAAGATTTTGCGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
14432910 AACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
14432974 GGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGCCCCCT
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-
* * * * *
14433038 CGATCGCCGTAACCCCAATGCCGTCGATTAGGTTCTCCGATGATGCTCTGACGATCGTGCCCCGA
583 CGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * * *
14433103 CGAAGGAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCATCCCTTGGTCCGG
648 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGG
* * * *
14433168 TCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
713 TCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
14433233 CAACCCATGAAACGAGTGTGCAGGCGCTCAACCGGCCAGAGGGGCGAGATTCGTAAGCCGAGGAT
778 CAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGAT
* * * * * * *
14433298 TGGTCAGGTCCCCCTCTACGTCCTG-CTGATCTTGTTACCGCAACCCTC-GATC-CATCC
843 CGGTCAGGTCCCCCTCTGCATGCTGTC-GATCCTGCTACCGCAACCCTCAG-TCTGATCC
* * * * * * * * *
14433355 GATCTTAGACTAGCAATGAACTTCGTATACTTAAGCCAACCTACGAAACGAGCGGGCAGGTGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACTGGCGGGTGGGC
* * * * * **
14433420 GAGCGGGCACTACG-CTGGCCAAAGAGATGGGATACCCAAGCCGTGGATCGATAGGGTCATAGGT
66 GGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGT
*
14433484 GGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
130 GGG-TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
14433549 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGA-T
194 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ** * * *
14433613 TTTCAAAAATTTTGCGGTACGAGATTTTTTAAAATTTTTTCGAATGG-GTTTTGGCCCCAAACTT
259 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* * *
14433677 GGTAGACGTGATCCTTGTATTTTTGTTGCCATGAACAAAACAATTCAGCTAAAAACTCGAAGTGT
324 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGT
*
14433742 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14433807 AAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
14433872 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCC
518 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * *
14433937 ACGATCGCTGGATCCCTAATGCCATCGATCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCG
583 -CGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* *
14434002 ACGAAGAAAAATATGGCACCAGAACATGCCCGAGCCCAGCATGTGCTG-CTGCAACCCTCGGTCC
647 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCC
* * *
14434066 GGTCCGATCTTATACTGGGAATGAACTTTGTATTCTTAGATTGGGAATGAACTCCGTATGCCTAA
711 GGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
14434131 GTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCAAGG
776 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCGAGG
* * * ** * * * *
14434196 AGCGGTCGGGTCCGCCTCTGTGTGTTGTCGATCCTGTTACCGTAACCCTCAGTCTGGTCC
841 ATCGGTCAGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGATCC
* * *
14434256 AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAATTGGCGGGTGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACTGGCGGGTGGGC
* * *
14434321 GGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
*
14434386 GGTCTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGT-TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
14434451 TGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
14434516 TTGAAACTTTTTGCGGTTCGAGATTTTTGAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTG
260 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
* * * * *
14434581 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTTAACTAAAACCTCGAAGTGTAC
325 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14434646 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCGA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
14434711 ACCTGTAAAATCTCATATGCTCTTTAAGGGGTTATGAGTTCTTGAGGTTTGATGAGGGATAGGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
14434776 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCTCATCATGTGCGCACACCCCCCGGCCCCCCC
520 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCC
* * ** *
14434841 GATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGAC
584 GATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * **
14434906 GAAGAAAAATACGGCACCAGCATATGCCCGAGCCCAGTATGTGCTACCGCAA----C---CC--T
649 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGT
* *
14434962 -CAATC-----C--GG--T---C--TG-AT-CTTAGACTGGGAATGAACTCCGTATGCGTAAGTC
714 CCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * ** * *
14435010 AACCCACGAAATAAGCGTGCGAGCACTCAACCGGCCAGAGGGGTGGGATAAGTAAGCCGGGGATC
779 AACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATC
* * * * *
14435075 GGTCGGGTCCCCCTCTGCATGCTGCCGATTCTGCTACCGCAACCCTCACTCCT-ATCT
844 GGTCAGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCAGT-CTGATCC
* * * * * *
14435132 GATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCTAACCGATGAAACGAGCTGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACTGGCGGGTGGGC
** *
14435197 GAACGGGCACTACATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
*** *
14435262 GGTTAAGGCACATCTTCATATTTCTATGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * * *
14435327 TAGTCCTTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTTTATTTTTCATGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * *
14435392 TTGATCCTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTA
260 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
* *
14435457 ATAGACTTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTA
* *
14435522 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGAA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
14435587 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
14435652 GGCCAATATAAGG
519 GGCCAATATAAGG
14435665 TCCGGTCCTA
Statistics
Matches: 2796, Mismatches: 343, Indels: 136
0.85 0.10 0.04
Matches are distributed among these distances:
875 1 0.00
876 450 0.16
877 159 0.06
878 42 0.02
879 237 0.08
880 3 0.00
882 17 0.01
883 16 0.01
884 51 0.02
885 36 0.01
886 186 0.07
887 27 0.01
888 19 0.01
889 8 0.00
890 8 0.00
891 9 0.00
892 46 0.02
893 30 0.01
894 30 0.01
895 8 0.00
896 3 0.00
897 3 0.00
898 136 0.05
899 52 0.02
900 272 0.10
901 237 0.08
902 344 0.12
903 59 0.02
906 12 0.00
907 224 0.08
908 24 0.01
911 6 0.00
913 1 0.00
915 40 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (900 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACTGGCGGGTGGGC
GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
TCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGG
TCAGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGATCC
Found at i:14436313 original size:700 final size:699
Alignment explanation
Indices: 14434965--14436363 Score: 1982
Period size: 700 Copynumber: 2.0 Consensus size: 699
14434955 CAACCCTCAA
* *
14434965 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATAAGCGTGC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGC
* * * * * *
14435030 GAGCACTCAACCGGCCAGAGGGGTGGGATAAGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCAT
66 GAGCACTCAACCGACCAAAGGGGCGGGATAAGCAAGCCGGGGATCGATCGGGTCCCCCTCTACAT
* * * **
14435095 GCTGCCGATTCTGCTACCGCAACCCTCACTCCTATCTGATCTTAGACTGGGAATGAACTCTGCAT
131 GCTGCCAATTCTGCTACCGCAACCCTCACTCCTATCTGATCTTAGACTAGGAATAAACTCCACAT
* * * * *
14435160 GCCTAAGCTAACCGATGAAACGAGCTGGCGGGCGGGCGAACGGGCACTACATCGGCCAGAGAGAC
196 GCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGAACGAGCACTACATCGGCCAGAGAGAC
* * *
14435225 GGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTATG
261 GGGATACACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGACACATCTTCATATTTCTAGG
* * * *
14435290 TGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCTTTAAGCCTTCACGTGAAGTTT
326 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGCCCCTTAAGCCTTCAAGTGAAGTTT
* * * ** * *
14435355 CACGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGATCCTTTTTACGGTTCGAGATTTTT
391 CACGGCAAGACAACTCATTTTGTATTTTTCACGATTTTTGAAACTTTTAAAGGTTCGAGATTTTT
* * * * *
14435420 TAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTAATAGACTTGATCCTTGTATTTTTTTTGG
456 TAAAATTCTTTTCGAAGGAGTTTTGGCCCCAAACTTAATAGACATGATCCTTGTATTTTTGTTAG
* *
14435485 CATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
521 CATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
14435550 GTCCCCATTTCAGACACTTTAATTGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAA
586 GTCCCCATTTCAAACACTTTAATGGCTACTGACAGAAAACCTGTAAAATCTCAAATCCTCTTTAA
* *
14435615 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGG
651 -GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGG
*
14435665 TCCGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
1 TCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTG
* * * * **
14435729 CGGGCGCTCAGCCGACCAAATGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACA
65 CGAGCACTCAACCGACCAAAGGGGCGGGATAAGCAAGCCGGGGATCGATCGGGTCCCCCTCTACA
* * ***
14435794 TGCTGCTAA-TCTTGCTGCCGCAACCCTTGGTCC-AGTCTGATCTTAGACTAGGAATAAACTCCA
130 TGCTGCCAATTC-TGCTACCGCAACCCTCACTCCTA-TCTGATCTTAGACTAGGAATAAACTCCA
* * * ** *
14435857 TATGCCTAAGCCAACCGACGAAACGATCGGGCAGGTGGGCGGGCGAGCACTAC-GCTGGCCAGAG
193 CATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGAACGAGCACTACATC-GGCCAGAG
* * *
14435921 AGATGGGATACGA-AAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGACACATCTTCATATTT
257 AGACGGGATAC-ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGACACATCTTCATATTT
* * * *
14435985 TTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGGCTTCAAGTGA
321 CTAGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGCCCCTTAAGCCTTCAAGTGA
* * * *
14436050 AGTTTCATGGCAAGACAACTCGTTTTGTATTTTTCACGATTTTTGAAACTTTTAAAGGTTTGGGA
386 AGTTTCACGGCAAGACAACTCATTTTGTATTTTTCACGATTTTTGAAACTTTTAAAGGTTCGAGA
**
14436115 TTTTTTAAAA-TCTTTTCGAATGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTT
451 TTTTTTAAAATTCTTTTCGAA-GGAGTTTTGGCCCCAAACTTAATAGACATGATCCTTGTATTTT
14436179 TGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAA
515 TGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAA
* *
14436244 AAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTGAAATCCT
580 AAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGAAAACCTGTAAAATCTCAAATCCT
*
14436309 CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGATAATATAAGG
645 CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGG
14436364 GCCAAGTACC
Statistics
Matches: 614, Mismatches: 79, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
699 58 0.09
700 553 0.90
701 3 0.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (699 bp):
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGC
GAGCACTCAACCGACCAAAGGGGCGGGATAAGCAAGCCGGGGATCGATCGGGTCCCCCTCTACAT
GCTGCCAATTCTGCTACCGCAACCCTCACTCCTATCTGATCTTAGACTAGGAATAAACTCCACAT
GCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGAACGAGCACTACATCGGCCAGAGAGAC
GGGATACACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGACACATCTTCATATTTCTAGG
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGCCCCTTAAGCCTTCAAGTGAAGTTT
CACGGCAAGACAACTCATTTTGTATTTTTCACGATTTTTGAAACTTTTAAAGGTTCGAGATTTTT
TAAAATTCTTTTCGAAGGAGTTTTGGCCCCAAACTTAATAGACATGATCCTTGTATTTTTGTTAG
CATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAAACACTTTAATGGCTACTGACAGAAAACCTGTAAAATCTCAAATCCTCTTTAA
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGG
Found at i:14441276 original size:26 final size:26
Alignment explanation
Indices: 14441240--14441289 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14441230 CTTGTCTGAT
* *
14441240 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14441266 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14441290 GGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14442244 original size:26 final size:26
Alignment explanation
Indices: 14442208--14442260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14442198 CCGGTCTGAT
*
14442208 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATTAACTCCGTATG
*
14442234 CTTAGATTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATTAACTCCGTATG
14442260 C
1 C
14442261 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATTAACTCCGTATG
Found at i:14443203 original size:26 final size:26
Alignment explanation
Indices: 14443174--14443255 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
14443164 CCGGTCTGAT
**
14443174 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
14443200 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
* *
14443226 CTTAGACTTGGAATGAACTCTGTTTG
1 CTTAGACTTGGAATGAACTCCGTATG
14443252 CTTA
1 CTTA
14443256 AGCCAACCCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:14444131 original size:26 final size:26
Alignment explanation
Indices: 14444102--14444154 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14444092 CCGGTCTGAT
14444102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14444128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14444154 C
1 C
14444155 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14444762 original size:26 final size:25
Alignment explanation
Indices: 14444733--14444782 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14444723 GATCTGATCC
14444733 TAGACTGAGAATGAACTCCGTATGCT
1 TAGAC-GAGAATGAACTCCGTATGCT
* *
14444759 TAGACGGGAATGAACTTCGTATGC
1 TAGACGAGAATGAACTCCGTATGC
14444783 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (25 bp):
TAGACGAGAATGAACTCCGTATGCT
Found at i:14446540 original size:26 final size:26
Alignment explanation
Indices: 14446504--14446576 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
14446494 CCGGTGCGAT
* *
14446504 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14446530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14446556 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
14446577 ATACGCGTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14447497 original size:26 final size:26
Alignment explanation
Indices: 14447426--14447504 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
14447416 TCGATTCGAT
** *
14447426 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14447452 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14447478 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCGTATG
14447504 C
1 C
14447505 CTAATTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14448839 original size:905 final size:903
Alignment explanation
Indices: 14444468--14456362 Score: 11319
Period size: 905 Copynumber: 13.2 Consensus size: 903
14444458 CTTGTAAAAT
*
14444468 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
14444533 AAATATTAA-GGCCAAGTACCAGCACCCATCACACATTATGTGCGCACA-CCCCCCGACACCCCC
66 CAATA-TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
** * * * * *
14444596 GATCATCGGAACCCCAATGCCGACGGTTAGGTTCTCCGGTGATGCTCCGGCAATGGTGCCTCGAT
130 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGAC
* * * * * * *
14444661 GAAAAAAAATACGACACCAGC-CAATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGATCCGA
195 GAAGAAAAATGCGGCACCAGCAC-ATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA
* * *
14444725 TCTGATCCTAGACTGAGAATGAACTCCGTATGCTTAGAC-GGGAATGAACTTCGTATGCCTAAGT
259 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
14444789 CAACCCACGAAATGAGCGTGCGGGTAG-TCAGTCGACCAGAGGGGCGGGATGCGCAAGCCAGGGA
324 CAACCCACGAAACGAGCGTGCGGG-CGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
14444853 TTGGCTGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCT-TATTTCGATCTGATCT
388 TCGACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGA-TCCGATCTGATCT
** * * * * * *
14444917 TACTCTAGGAATGAACTCCGTATGCCTAAGCCAGCAGACGAAATGAGCGGGCGGGCGGGCGGGCG
452 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GACGGGCAGGCG
* * * *
14444982 GGCACTAC-TCTGCGCGGAGAGAC-AGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GGC
516 GGCACTACGCCGGC-CAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
14445044 TTAGGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
579 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14445109 TCCCTTAAGCCTTCATGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
644 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* *** * * **
14445174 AAACTTTTTACGGTTC-GAGATATTTTAAAATTTTTTTAAAAGGATTTTTGGCCCCAAACGTATT
709 AAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
14445238 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCCAAAAACTCGAAGTGTACA
773 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
14445303 AGGTTTTATGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAGTGGCTACTGAG-AGCAA
838 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG-GCAGCAA
14445367 AC
902 AC
*
14445369 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14445434 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCTCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* ** * * *
14445498 ATCACCGGAACAACAATGTCGCCGGTCAGG-T-T-C-----T-CT--GGCGATGGTGCCTCGATG
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * * * * *
14445552 AAGAAAAATACGGCACCCA-CACATG-CTCGATCCCAGCATGTGCTGCCACGACCCTCGGTTCGG
196 AAGAAAAATGCGGCA-CCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA
* * * *
14445615 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGA-TTGGAATGAACTTCGTATGCCTAAGT
259 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
14445679 CAACCCACGAAACGAACATGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGAT
324 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * * *
14445744 CAACCGGGTCCCCCTCTGCGTGCTATCAATCCTACTGCTGCAACCCTCGGTCGGGTCTGACCATA
389 CGACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTA
* * *
14445809 GATTGGGAATGAACTCTGTATGGCTAAGCCAACCGACGAAACGAGC-GG-G-C--G--GGCGGGC
454 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGACGGGCAGGCGGGC
* * *
14445867 ACTAAGCCGGCCAAAGAGAC-AGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAG
519 ACTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *** * *
14445931 GCACATATTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGATCCC
583 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
14445996 CTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
648 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAAC
** * * *
14446061 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGCTAA-GAGTTTTGGACCCTAACTTGGTAGAC
713 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
14446125 GTGAGCCTTTTATTTCTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGAT
777 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
14446190 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAAC
842 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14446252 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGAGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
14446317 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATATGCACACA-CCCCCCGGCCCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* *
14446381 ATCGTCGGAACCCCAAT---GCC-GTC-GG---TCAGGT--T-CTCCGGCGATGGTGCCCCGACG
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * * * *
14446435 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGAAACCCTCGATCCGGTG
196 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGGT-
14446500 CGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
255 C---C-------------G-A-TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
14446565 GGAATGAACTCCATACGCGTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGGCCAG-G
300 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * ** *
14446629 GAGGCGGGATGCG-AATGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
365 G-GGCGGGATGCGCAA-GCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCC
* * * * * * *
14446693 ACAACCCTCGATCTGGTCTGATCATAGACTAGGAATGAACTCTGTATGCCTAAGCCAATCGACGA
428 GCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
14446758 AACGAGC-GG-G-C--G--GGCGTGCACTACGCCGGCCAGAGATATTG-GATGCGCAAGCCGTGG
493 AACGAGCGGGCGACGGGCAGGCGGGCACTACGCCGGCCAGAGAGA-CGAGATGCGCAAGCCGTGG
* * *
14446815 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTAT
557 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
14446880 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
622 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * * *
14446945 TTTCTATTTTTGACGATTTTGGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTCTTTCGAAAA
687 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAG
* *
14447009 GAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTC
751 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
*
14447074 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
816 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
14447139 TTTAATGGCTACTGGCAGCAAAC
881 TTTAATGGCTACTGGCAGCAAAC
* * * *
14447162 CTGTAAAATCTTAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATCGGGGGA
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14447227 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * * * * *
14447292 ATCGCCAGAACCACAATGCTGCCGGTCAGGTTCTTCGGGGATGCTCCTGTGATGGTGCCCCGACA
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * **
14447357 AAGAAAAATACGGCACCAGCACATGCCGGAGCCCAGCATGTGCTGTTGCAACCCTCGGTTCGATT
196 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA-CC-C---TCG---
**
14447422 CGATCTTAGACTATGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCTTAGACTG
253 -G-TC-----C---G-AT---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
14447487 GGAATGAACTTCATATGCCTAATTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
300 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* ** * * ** * *
14447552 GGGCGGGATGCACAAGCCAAGGATCGGCCTGGTCCCCCTCTGCGTGCTATAAATCCTACTGCCAC
365 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGC
* * * * * *
14447617 AACCCTCGGTCCGGTCTGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGCCAAACGATG-AA
430 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
14447681 --A-----CGA---GCAGGC--G----A-------C-----G--G-GATGCGCAAGTCGTGGATA
495 CGAGCGGGCGACGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATC
* *** * *
14447715 GATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCTTTTTTATTGC
560 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
14447780 TTGTAAATTCATATAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTT
625 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
14447845 CTATTTTTTATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATGTTTTCGGAAGGAAT
690 CTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
14447910 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTTGCATGCATAAAAAAATTCAGC
755 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGC
* * * ***
14447974 TAAAAAGTCAAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTTTTACACTTT
819 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
14448039 AATGGCTACTGGCAGCAAAT
884 AATGGCTACTGGCAGCAAAC
* *
14448059 CGGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
14448124 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACGCCCCCCGGCCCCCCC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCC
* ** * * * *
14448189 GATCGTCGGAACCCCAATGCTACCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCAGGC
130 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGAC
* * * * **
14448254 GAAGAAAAATGCGCCACCAGCACATGCCTAAGCCCGGCATGTGCTACCGCAACCCAGGGTCCGAT
195 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* ** * *
14448319 CTGATCTTAGGCTGGGAATGAACTTTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTT
260 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * *
14448384 AACCCATGAAACGAGCGTGCAAGCGCTCAGCCGACCAGAGGGGTGGGATGTGCAAGCCGGGGATC
325 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * *
14448449 GATCGGGTCCCCCTCTACGGGCTACCGATCCTGCTGCCGTAACCCTCGATCCGATCTGATCTTAG
390 GACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAG
14448514 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGACGGGCAGGCGGGC
455 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GACGGGCAGGCGGGC
* * *
14448579 ACTATGCCGGCCAGAGAGACGAGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGAGGGTTTAGG
519 ACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
14448644 CACATCTTCATATTTATGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACTATGGTCCCT
584 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
14448709 TAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACT
649 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT
** *
14448774 TTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
714 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
14448839 GGTCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTT
779 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
14448904 CGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAAC
844 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
14448964 CTATAAAATCTCAAATGCTCATTAA-GGGGTGTGAGTTCTGGAGGTTTGATGAAGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14449028 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * *
14449092 ATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACG
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
*
14449157 AAGAAAAATGCGGCACCAGCACATGCCT-AGCCCAGCATGTGCTGCTGCAA-CC-C--T-C-A--
196 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
*
14449213 -G----T---CT--G---G---TCC-TAT-CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCA
261 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * ** * *
14449260 ACTCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGTGCAAGTCGGGGATCG
326 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * *
14449325 GCCGGGTCCCCCTCTACGTGCTGTCGATCTTGCTGCTGCAACCCTTC-ATCCAATCCGATCTTAG
391 ACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCC-TCGATCCGATCTGATCTTAG
* * * * *
14449389 ACTGGGAATAAACTCCGTATGCCTAAACCCACTGACGAAACGAGCATGCGG-GA-GGG-GGGCGG
455 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGCGACGGGCAGGCGG
* * * * *
14449451 GCACTACGTCGACCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTA
517 GCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * **
14449516 GGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTTG
582 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
14449581 CTTAGGCCTTCACATGAATTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
647 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
* * * * *
14449646 CTTTTTACGGTTCGGGATTTTTAAAAATTTTTTTGGGAA-GTGTTTTGGCACCAAACTTGGTAGA
712 CTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
14449710 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAATATTTCAGCTAAAAACTCGAAGTGTACAAGG
776 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
***
14449775 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTTTACACTTTAATGGCTACTGGCAGCAAAC
841 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14449838 CTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
14449903 CAATATAAGGGCCAAGTACCAGCAGCCATCACACATCATGTGCACACACGCCGCCCGGCCCCCTC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCC
* ** * *
14449968 GATCGCCGAAACCCCAATGCTACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCAGGC
130 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGAC
* **
14450033 GAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGCAACCCAGGGTCCGAT
195 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* * **
14450098 CCGATCTTAGGCTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
260 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
14450163 AACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGTGGGATGTGCAAGCCGGGGATC
325 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
14450228 GACCGGGTCCCCCTCTACGGGCTACCGATCCTGCTGCCGTAACCCTCGGTACGATCCGATCTTAG
390 GACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAG
*
14450293 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGACGGGCGGGCGGGC
455 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GACGGGCAGGCGGGC
* * * * *
14450358 ACTATGCCGGCCAGAGAGACGAGACGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGC
519 ACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
14450423 CACATCTTCATATTTCTGCATGCCAATGCCCTTTTTATGGCTTGTAAATTCATACAATGGTCCCT
584 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * **
14450488 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATATTTCATGATTTTCGAAACT
649 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT
* *
14450553 TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
714 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
14450618 GGTCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTAAAAGATTT
779 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
14450683 CGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAAC
844 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14450743 CTATAAAATCTCAAATGCTCATTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14450807 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACACCCCCGG-CCCCCC-
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * *
14450868 ATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCTGACG
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* *
14450933 AAGAAAATTGCGGCACCAGCACATGCCT-AGCCCAGCATGTGCTACCGCAA-CC-C--T-CG---
196 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
14450989 -G----T---CT--G---G---TCC-TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
261 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
14451036 ACCCACGAAATGATCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
326 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** * * ** * *
14451101 GTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGTTGCAACCCTCGATCCAATCCGATCTTAGA
391 ACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGA
* ** * ** * *
14451166 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCATGCGGGCGGGGGGGCAGGAA
456 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GACGGGCAGGCGGGCA
* * * *
14451231 CTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTTGGC
520 CTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * * *
14451296 ACATCTTCATATTTTTACATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATAGTTCCTT
585 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * * * *
14451361 AGGCCTTCATGTGAATTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
650 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTT
* * *
14451426 TTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCACCAAACTTGGTAGACATG
715 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
14451490 ATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGGTTTT
780 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * * *
14451555 TTGACCATTTGAAAAAAGTGTCCGCATTTCAAACACTTTAATGGCTACGGGTAGCAAAC
845 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14451614 CTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** * ** *
14451679 CAATATAAGGTTCAAATACCAGCACCCATCGCACATGTTGTGCGCACA--CCCCC-GACCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * * **
14451741 ATTGTCGGAACCCTAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTG
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
** *
14451806 AAGAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCGTAA-CC-C--T-C-A--
196 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
* * * *
14451863 -G---TT---C---G---G---TCCG-AT-CTTGGACTGGGACTGAACCCCGTATCCCTAAGTCA
261 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
14451910 TCCCACGAAACTAGCGTGCGGGCGCTTAGCCGACTAGAGGGGCGGGATGCGGAAGCCGGGGATTG
326 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * * *
14451975 ACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCATAACCCTC-AGTCTGGTCCGATCTTAG
391 ACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGA-TCCGATCTGATCTTAG
* * * * *
14452039 ACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGTGGGCGGGCGGGCAGACGGGC
455 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GACGGGCAGGCGGGC
* * * *
14452104 ACAACCCCGGCCAGAGAGACGGGATGCACAAGCCGT-GATCGATAGGGTGGTAGGTGGGTTTA-G
519 ACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
14452167 CTACATCTTCAAATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACTATGGTCCC
584 C-ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
14452232 TTAAGCCTTCACGTGAA-TCTT-GTGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCAAAA
648 TTAAGCCTTCACGTGAAGT-TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
* * * **
14452295 CTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAGCTTATTAGAC
712 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
14452360 GTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
777 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
14452425 TTTGTGACCATCTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGGCAGCAAAC
842 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
14452487 TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTTGAGGTTTAATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14452552 CAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* ** * *
14452616 ATCGCCGGAACCCCAATGCCGCCGGCCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCCGAC
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTG-CCCCGAC
** * *
14452681 GAAGAAAAATATGGCACCAGCACATG-CTCGAGCCCATCATGTGCTGCCGCAACCCTCGGTCCGG
195 GAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA
14452745 T-TCGATCTTAGACTGGGAATGAACTCCAG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
259 TCT-GATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
14452808 GTCAACCCACGAAACGAGCGTGCAGACGCTCAGCCGACCAGAGGGGCGGGAT------G-C---G
322 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** *
14452863 -T-GA----G------TC-GAG-G--ATC-A-----AT--CGCAACCCTTTG-TCTAATCCGATC
387 ATCGACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCC-TCGATCCGATCTGATC
* *
14452903 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG-TGG-G-CGGGCAGGCG
451 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGACGGGCAGGCG
*
14452965 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
516 GGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
14453030 AGGCATATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTC
581 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
14453095 CCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
646 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAA
* * * * * *
14453160 ACTTTTTCCGTTTCAGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGGCCCATACTTGGTAGA
711 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
** *
14453225 CAAGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGA
776 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14453288 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTACTGGCAGCAAAC
841 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
14453351 CTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
14453416 CAATGTAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACTCCCCCCCGGCCCCTCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * ** * ** **
14453481 ATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCAACGATGGTGCCCCGGTG
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
** * * ** **
14453546 AAGAAAAATATGGCACCAGCACATG-CTCGAGCCCAGCATCTGCTGCTGCAACCCTCAATCTAAT
196 AAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* * **
14453610 TTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGTGGGAATGAACTCTATATGCCTAAGTC
260 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * * * * *
14453675 AACCCATGAAAAGAGCGTACGGGTGCTCAACCGGCTAGAAGGGCAGGATGCGCAAGCTGGAGATC
325 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * * * * *
14453740 GATCGGATCCACC-CTACATGCTGTCGATCCTACTACCACAACCCTC-AGTCTGGTCTGATCTTA
390 GACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGA-TCCGATCTGATCTTA
* ** ** * * * * *
14453803 GACTGAGAATGAACTCCGTATGTGTAAGCCAGAGAGACGGGATGCACAAACCGTGATCGATAGGG
454 GACTGGGAATGAACTCCGTATGCCTAAGCCA-ACCGAC--GA--AAC-GAGCG-G-GCG--A-CG
* * ** * ** * ***** * * * *
14453868 TGGTAGGTGGG-TTTAGGCACATCTTCATATTTTTG-CATGC-CAATGCCATTTTTATGGCTTG-
508 -GGCAGGCGGGCACTACGC-CGGC--CAGAGAGACGAGATGCGCAA-GCC------GTGGATCGA
*** ** ** * * * * * * * *
14453929 TAAATTCATACAATGGTCTCTTAAGC-CTTC-ACGTGAAGTTTCATGCCAACACGACTCATTTTC
562 TAGGGTGGTA-GGTGG-GT-TTAGGCACATCTTCAT--A-TTTC-TG----CATG-C-CA-ATGC
* ** * ** * *** *** **
14453992 TATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCG-GAAGGCAT
613 CATTTTT-ATGGCTTGT-AAA-TTCATAC-AAT--GG-TCCCTT-AAGCCTTCACGTGAA-G--T
** * ** ** ****
14454056 TT--TGGCCCCCAA-ACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCA-TGCTAAAAAAAATT
667 TTCATGG----CAAGAC---G-ACTCGT--T--TTCTATTTTTCATG--ATTTTTAAAACTTTTT
* * **** * * * * * * ** * *
14454117 -CAGCT-A--AAAAATT-GAA-GTGTAC--AA-GA-TTTTGTG-ACC--ATTTGAAAAAAGTG-T
718 ACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTAGACGTGAT
** ** * * ** *
14454168 CCCCATT-TCAGACACTTTAATGGCTACTGGTACCAAACCTGTAAAA-TC-TC-AAATGCTCTTT
782 --CC-TTGT---A-TTTTTTTTGGC-A-T-GCA-CAAA-----AAAATTCAGCTAAAAACTC--G
* *** * ** * * * ** * *
14454229 AAGGGGGTGTGAG-TTCT-TG-CGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGAACC
829 AA--GTGTACAAGATTTTGTGACCATTTGA--A--AAAAGTGTCCCCAT-T------TCAG-A-C
**** * * **
14454291 AGCACCCATCGCACATCATGTGTGCA-CACCCCC
879 A-CTTTAAT-G-GC-T-A-CTG-GCAGCA--AAC
* **** * * ** ** ** * * * * **
14454324 CGGCCCCCCGGATCGTCGAAA-CCCCAATATCGTCG-GTCAGGTTCTC-CGGTGATGCTCCGGCG
1 CTG----TAAAATC-TC-AAATGCTCTTTAAGGGGGTGTGA-GTTCTCGAGGT-TTGATGAGG-G
** ** * **** * * * * *
14454386 AT-GGTGCCCCGGT-GAAGAAAAATACGGCACCAGCACATGC-TCGAGCCCAGCATGTGCCGCTG
57 ATAGG-GGGCCAATATAAGGGCCA-A--GTACCAGCAC--CCATC--GCACATCATGTG-CGC-A
* * **** * **
14454448 CA-ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
112 CACCCCCCCGG-CCCCCCCGATC---G-C--CG---GAAC-CCCAATGCC---G------C-CG-
** * ** * * * * ** * * * * *
14454512 AACGAGCGTACGAGCGCTCA-G-TCGGGCAGAAGG-G-CGGGATG-CG-TAAGTCGGGGATCGAC
155 GTC-AG-GTTC-TCCGGTGATGCTCCGGC-GATGGTGCCCCGACGAAGAAAAAT-GCGG--C-AC
* * * * * * ** * *
14454571 CGGGTCCCCTCTGCGTGCTG-CC-G-ATCCTGCTGCCGCAAGTCTCGGTCTGGTCTGATCTTAGA
212 C-AG--CAC-ATGCCTG-AGCCCAGCAT-GTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGA
* * * *
14454633 C-GAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCGATGTCAACCCACAAAA
271 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * **
14454697 CGAGTGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGGTCCC
336 CGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCC
* * * * * *
14454762 CCTTTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCTGGTCTAATCTTAG-CTTGGGAATG
401 CCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGAC-TGGGAATG
* * * ** * * *
14454826 AACTGCGTATGCCTAAGCCAACCGACGAAATGAGCGGACGGGTGGGCGGGCGGGCACTACGTCGA
465 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GACGGGCAGGCGGGCACTACGCCGG
* *
14454891 CCAGAGAGACGAGTTGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
529 CCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * * *
14454956 TATTTCTTCGTGGCAATGCAATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
594 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
14455021 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAATTTTGAAACTTTTTACGGTT
659 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTT
* * * * *
14455086 CTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACCTGGTAGACATGATCCTTGTA
724 CAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * * * *
14455151 TTTTTGTTGGCATGCACGAAAAAATTTACCTAAAAATTCGAAATGTTCAAGATTTTGTGACCATT
789 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
14455216 TGAAAAAAGTGTCCCCATTTCTGACACTTTCATGGCTACTGGCAGCAAAC
854 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * * *
14455266 CTATAAAATCTCAAATGCACTTTAAGGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATTGGGGGA
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
14455331 CAATATAAGGGCCAGGTACCAGCACCCATCACACATCATGTGCGCATA-CCCCCCGGCCCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * *
14455395 ATCGCCTGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGACGATCGTGCCCCAACG
131 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
** * * * * *
14455460 AAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTA
196 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
* *
14455525 TGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCA
261 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
14455590 ACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCTAGAGGGGCGGGTTACGCAAGCCGGGGATCG
326 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * *
14455655 ACCGGGTCCCTCTCTGGGTGCTGTCGATCCTGCTACCACAACCCTC-AGTCTGATCTGATCTTAG
391 ACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGA-TCCGATCTGATCTTAG
* * * * * * * ** ** **
14455719 ACTGGGAATGAACTCCGTACGACTAAGCGAATCGATGAAACGAACGGACGGGTGGGTGGGCGGTT
455 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GACGGGCAGGCGGGC
* * * * * *
14455784 ACTATGCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATGGGGAGGTAGGTGGGTTTAGG
519 ACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
14455849 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCT
584 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
14455914 TAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCAATTTTTCACGATTTTTGAAACT
649 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT
* **
14455979 TTTTACGATTCAGGATTTTTTAAAATTGTTTT-GGAAGGAGTTTTGGCATCAAACTTGGTAGACG
714 TTTTACGGTTCAGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
14456043 TGATCCTTGTACTTTTTTTGGCATGCACAAAAAAATTC-GACTAAAAATTTGAAGTGAACAAGAT
778 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTACAAGAT
* * * *
14456107 TTTGTGACCAATTGAAAAAAGTGTCCCCGTTTCGGACACTTTAATGGCTACTAGCAGCAAAC
842 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
14456169 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** *
14456234 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATGTTGTGAGCACAACCCCCCCGGCCCCCCC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGGCCCCCCC
* ** * * * ** *
14456299 GATCGTCGGAACGGCAACGCCGCCGGTCAGGTTCTCTGGCGATGCTCCAACGATGCTGCCCCGA
130 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGA
14456363 TGAGCCCACA
Statistics
Matches: 9105, Mismatches: 1416, Indels: 942
0.79 0.12 0.08
Matches are distributed among these distances:
863 1 0.00
864 392 0.04
865 174 0.02
866 122 0.01
867 2 0.00
868 61 0.01
869 1 0.00
870 2 0.00
871 165 0.02
872 757 0.08
873 428 0.05
874 631 0.07
875 337 0.04
876 62 0.01
877 104 0.01
878 27 0.00
879 9 0.00
880 10 0.00
881 6 0.00
882 60 0.01
883 480 0.05
884 14 0.00
885 6 0.00
886 3 0.00
887 4 0.00
888 9 0.00
889 8 0.00
890 263 0.03
891 7 0.00
892 5 0.00
893 4 0.00
894 4 0.00
895 3 0.00
896 11 0.00
897 486 0.05
898 140 0.02
899 87 0.01
900 17 0.00
901 178 0.02
902 215 0.02
903 660 0.07
904 369 0.04
905 786 0.09
906 14 0.00
907 8 0.00
908 7 0.00
909 42 0.00
910 632 0.07
911 35 0.00
912 14 0.00
913 7 0.00
914 7 0.00
915 4 0.00
916 5 0.00
917 1 0.00
918 20 0.00
919 18 0.00
920 5 0.00
921 9 0.00
922 272 0.03
923 8 0.00
924 1 0.00
925 1 0.00
926 2 0.00
927 3 0.00
928 9 0.00
929 9 0.00
930 11 0.00
931 15 0.00
932 3 0.00
933 7 0.00
934 11 0.00
936 11 0.00
937 30 0.00
938 26 0.00
939 3 0.00
940 12 0.00
941 5 0.00
942 8 0.00
943 10 0.00
944 9 0.00
945 8 0.00
946 6 0.00
947 3 0.00
948 4 0.00
949 16 0.00
950 10 0.00
951 8 0.00
952 9 0.00
953 10 0.00
954 4 0.00
955 5 0.00
956 8 0.00
957 1 0.00
958 1 0.00
959 8 0.00
960 4 0.00
961 8 0.00
962 6 0.00
963 17 0.00
964 20 0.00
965 2 0.00
966 7 0.00
967 6 0.00
968 8 0.00
969 5 0.00
970 8 0.00
971 10 0.00
972 8 0.00
973 14 0.00
974 3 0.00
975 17 0.00
976 7 0.00
977 10 0.00
978 24 0.00
979 13 0.00
980 5 0.00
981 12 0.00
982 8 0.00
983 9 0.00
984 11 0.00
985 9 0.00
986 11 0.00
989 1 0.00
990 1 0.00
991 4 0.00
992 7 0.00
993 4 0.00
994 11 0.00
995 8 0.00
996 7 0.00
999 5 0.00
1000 6 0.00
1001 12 0.00
1002 4 0.00
1004 1 0.00
1005 5 0.00
1006 8 0.00
1007 6 0.00
1008 6 0.00
1009 13 0.00
1010 4 0.00
1011 118 0.01
1012 99 0.01
1013 6 0.00
1014 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
ACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGACGGGCAGGCGGGCAC
TACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTT
TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
Found at i:14450153 original size:26 final size:26
Alignment explanation
Indices: 14450103--14450155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14450093 CCGATCCGAT
* **
14450103 CTTAGGCTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14450129 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14450155 C
1 C
14450156 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14453666 original size:26 final size:26
Alignment explanation
Indices: 14453615--14453667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14453605 CTAATTTGAT
*
14453615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14453641 CTTAGAGTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
14453667 C
1 C
14453668 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14454668 original size:26 final size:25
Alignment explanation
Indices: 14454627--14454678 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14454617 CTGGTCTGAT
14454627 CTTAGACGAGAATGAACTCCGTATG
1 CTTAGACGAGAATGAACTCCGTATG
*
14454652 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAC-GAGAATGAACTCCGTATG
14454678 C
1 C
14454679 CGATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
CTTAGACGAGAATGAACTCCGTATG
Found at i:14457134 original size:26 final size:26
Alignment explanation
Indices: 14457105--14457157 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14457095 CCGATCCAAT
*
14457105 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14457131 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14457157 C
1 C
14457158 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14458050 original size:26 final size:26
Alignment explanation
Indices: 14458014--14458066 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14458004 CCGATCCGAT
14458014 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14458040 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14458066 C
1 C
14458067 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14459817 original size:687 final size:683
Alignment explanation
Indices: 14458264--14460838 Score: 3445
Period size: 687 Copynumber: 3.8 Consensus size: 683
14458254 GCAGGCGGGC
* *
14458264 GGGCACTGCGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
14458329 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
14458394 CCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATTTTTCATGA-TTTTGA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** * * *
14458458 AACTTTTTGTGGTTCAGGATTTTTTAAAA-TTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAG
196 AACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
** * * *
14458522 ATTTGATCCATGTATTTTTATTGGCTTGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAA
261 ACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAA
* * *
14458587 ATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACC
326 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
* *
14458652 TGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCC
391 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14458717 AATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGCACACTCCCCCGGCGCCACCGA
456 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGC-CC-CCGA
* * *
14458782 TCACCGGAACCCCAATGCTGTTAGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAACGA
518 TCGCCGGAACCCCAATGC-------C--G---TCC---GA--------CGATGGTGACCCGACGA
*
14458847 AG-AAAATTCCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTC
560 AGAAAAATTACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTTGGTCC-GTC
* * * **
14458911 CGATCTTAGACTGGGAATGAACTTCGTATGCCTATGCCAACCGACGAAGCGAGCGGTTGGG
623 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGCAAGCGCATGGG
* * *
14458972 CGGGCACTACGCCGGCCAGAGAGACTGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
1 -GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ** * *
14459037 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATCTCTTTTAAATTCATACAATTG
65 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
14459102 TCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTT
130 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** ** * *
14459167 AAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTA
195 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
14459232 GATGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
260 GACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14459297 AATTTTGTGACCTTTTGAAAAAAGTGTCCCCATGTCAAACACTTTAATGGCTACTGGCAGCAAAC
325 AATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
* *
14459362 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATGGGGGGA
390 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-
*
14459427 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCAGCCACCCGA
454 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCGA
* *
14459491 TCGCCGGAACCCCAATGCCGTCCGACGATGGTGACCCGACGAAGAAAAATTGCGGCACTAGCACA
518 TCGCCGGAACCCCAATGCCGTCCGACGATGGTGACCCGACGAAGAAAAATTACGGCACCAGCACA
* * *
14459556 TGCCCGAGCCTAGCATGTGCTGCAGTAACTCTTGGTCCTGTCCAATCTTAGA-TCGGGAATGAAC
583 TGCCCGAGCCCAGCATGTGCTGCCGTAAC-CTTGGTCC-GTCCGATCTTAGACT-GGGAATGAAC
14459620 TCCGTATGCCTAAGCCAACCGACGAAGCAAGCGCATGGG
645 TCCGTATGCCTAAGCCAACCGACGAAGCAAGCGCATGGG
* * *
14459659 TGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGAGT
1 -GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
14459724 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
65 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
14459789 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
130 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
**
14459854 AAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
195 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
14459919 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTC--C------C-C--A-T-T-C--
260 GACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* **** *
14459968 ---CTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTTGTACTTTAATGGCTACAGGCAGCAAAC
325 AATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
*
14460030 CTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGG
390 CTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
14460095 CACACATA-AGGGGCCAAGTACCAGCGCCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCC
454 C-CA-ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC
* * * * * * **
14460159 GATCGTCGGAACCCTAATGCCGTTCGACGATGGTGACTCGGCGAATAAAAA-TACGAAACCAGCA
516 GATCGCCGGAACCCCAATGCCGTCCGACGATGGTGACCCGACGAAGAAAAATTACGGCACCAGCA
* * * * * *
14460223 CATGCCCGAGCCCAGAATGTGCTACCGCAAGCCTCGGTCCGATCTGATCTTAGACTGAGAATGAA
581 CATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTTGGTCCG-TCCGATCTTAGACTGGGAATGAA
** * * * *
14460288 CTCCGTATGTGTAAGTCAAGCC-ACGAAACAAGCGTA-CGG
644 CTCCGTATGCCTAAGCCAA-CCGACGAAGCAAGCGCATGGG
* * * * **
14460327 GCGCTC-A-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGTGGATCGATTTGGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
14460390 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
14460455 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCATGATTTTTGA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** * *
14460520 AACTTTTTACACTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCGAACATT-GTT
196 AACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTA
** * *
14460584 GACGTGATCGTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAA
260 GACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
14460649 GATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATAGCTACTTGCAGCAAAC
325 AATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
*
14460713 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGC
390 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14460778 CAATATAAGGGCCAAGTATC-GACACCCATCGCACATCATGTG-GTCACACCCCCCGGCCCCC
455 CAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCG-CACACCCCCCGGCCCCC
14460839 CTGATCGTCG
Statistics
Matches: 1681, Mismatches: 146, Indels: 107
0.87 0.08 0.06
Matches are distributed among these distances:
665 268 0.16
666 3 0.00
667 5 0.00
668 83 0.05
669 164 0.10
670 61 0.04
671 2 0.00
673 2 0.00
674 2 0.00
675 1 0.00
676 2 0.00
677 1 0.00
678 2 0.00
679 2 0.00
680 10 0.01
681 45 0.03
682 38 0.02
683 65 0.04
684 13 0.01
685 1 0.00
686 19 0.01
687 384 0.23
694 2 0.00
697 3 0.00
700 1 0.00
702 1 0.00
709 199 0.12
710 41 0.02
711 213 0.13
712 48 0.03
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (683 bp):
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAA
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGATCG
CCGGAACCCCAATGCCGTCCGACGATGGTGACCCGACGAAGAAAAATTACGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCGTAACCTTGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAGCAAGCGCATGGG
Found at i:14462785 original size:26 final size:26
Alignment explanation
Indices: 14462756--14462834 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
14462746 CTGGTCCGAT
14462756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14462782 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14462808 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14462834 C
1 C
14462835 CTAAGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14463224 original size:26 final size:26
Alignment explanation
Indices: 14463195--14463247 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14463185 CCGGTCCGAT
14463195 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14463221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14463247 C
1 C
14463248 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14464744 original size:26 final size:26
Alignment explanation
Indices: 14464708--14464778 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
14464698 CCGGTCCAAT
*
14464708 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14464734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14464760 CGTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
14464779 TCGCATGCGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14464786 original size:26 final size:26
Alignment explanation
Indices: 14464710--14464789 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
14464700 GGTCCAATCT
*
14464710 TAGACTGGGAATGAAC-TCTGTATGCT
1 TAGACTGGGAATGAACTTC-GTATGCG
*
14464736 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTTCGTATGCG
*
14464762 TAGACTGGGAATGAACTTCGCATGCG
1 TAGACTGGGAATGAACTTCGTATGCG
14464788 TA
1 TA
14464790 ACTCAACCCA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCG
Found at i:14465664 original size:26 final size:26
Alignment explanation
Indices: 14465635--14465687 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14465625 CCGGTCCGAT
*
14465635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14465661 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14465687 C
1 C
14465688 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14465882 original size:12 final size:12
Alignment explanation
Indices: 14465865--14465889 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14465855 ACCGACGAAA
14465865 CGAGCGGGCGGG
1 CGAGCGGGCGGG
14465877 CGAGCGGGCGGG
1 CGAGCGGGCGGG
14465889 C
1 C
14465890 ACTATGCCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:14470450 original size:26 final size:26
Alignment explanation
Indices: 14470421--14470473 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14470411 CCGGTCCGAT
*
14470421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
14470447 CTTAGTCTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14470473 C
1 C
14470474 GTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14473682 original size:895 final size:891
Alignment explanation
Indices: 14470504--14475533 Score: 6189
Period size: 894 Copynumber: 5.7 Consensus size: 891
14470494 AACGTGCAGG
* * * * * *
14470504 CCCTCGGTCTGGTCCGATCCTAGACTGGTAATGAACTCCGTATGCGTAAGCCAACCGAAGAAATG
1 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCG-ACAAA--
* * * ** * *
14470569 AGCGGACGGGCGGGCAGGCGGGCACTAAACCGGCCAAAGAGACAAGATACGTAAGCCGTGGATCG
63 A-C-GA---GCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * * *
14470634 ATAGGGTGGTCGGTCGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATTCCATTTTTGTGGCT
123 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * *
14470699 TGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAGGTTTCATGGCAAGACAACTCGTTTTC
188 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTC
* * *
14470764 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGATGGAGTT
253 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTT
* *
14470829 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAATATTCAGCTA
318 TTGGCCCCAAA-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
14470894 AAAACTCAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTTAGACACTTTAA
382 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
**
14470959 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTT
447 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
14471024 TGATGAGGGATAGGAGGCCAATATAAAGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAC
512 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * **
14471089 ACCCCCCGGCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGG
577 ACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGG
* * * * * *
14471154 CGATGGTACCC-CGACGAAGAAAAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGTTGCCG
642 CGATGGTGCCCTAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCG
* *
14471218 TAA-CC-C--TTGGT-C---C--------G---G--C-CC-AAT-CTTAGACTGGGAATGAACTC
706 CAACCCTCGGTTGGTCCGATCTTAGAATGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
14471259 CGTATGCCTAAGTCAACTC-ACGAAACGAGCGTGCGTGAGCTCAG-CGGACTAGAGGGGCAGGAT
771 CGTATGCCTAAATCAAC-CAACGAAACGAGCGTGCGGGCGCTCAGCCGG-CCAGAGGGGCAGGAT
**** ** * * * *
14471322 AAAAAAGCCAGGGATCAACCGGGTCCCCCTCTACGTGTTGCCCAGCCTGCTACCACAA
834 GCGTAAGCCAGGGATTGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAA
* * * * *
14471380 CCCTCGATCCGGTCCAATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACG
1 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACG
** * * *
14471445 AGCGGGCGGGCGGGCACTACGTCGACCAGTGAGACGGGATGCACAAGCCGTGGATCGATAGGGTG
66 AGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * * *
14471510 GTAGATTGGTTTAGGCACATCTCCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGCAAATT
131 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
14471575 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
196 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * * *
14471640 ATGATTTTTGAAACTTTTTGCTGTTCGAGATTTTGTAAACTTTTTTTGGAAGGAGTTTCGGCCCC
261 ACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCC
* * * *
14471705 AATCTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACG
326 AA-ATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
14471770 AAGTGTACAAGATTTTGTGACTATTT-AAAAAATGTGTCCCCATTTCAGACATTTTAATGGCTAC
390 AAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
14471834 TGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGAGTGTGAGTTCTCAAGGTTTGATGAG
454 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
14471899 GGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCC
519 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * * * *
14471963 TGACCACCCCGAACGTTGGAACCCCAATGCCGTCGGTCAGGGTCTCTGGTGATACTCTGACGATG
584 AG-CC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATG
* * * * * * *
14472028 GTG-CCTCGGTGAAGAAAAATGCGGCACCAGCACTTGCCCAAGCCTGGCATGTGCTACCACAACC
647 GTGCCCT-AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACC
* * *
14472092 CTCGGTTCGGTTCGATCTTAGAATGGGAATGAACTCCGTTTGCTTAGACTGGGAATAAACTCCGT
711 CTCGGTT-GGTCCGATCTTAGAAT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * * ** * *
14472157 ATGCCTAAATTAACCCATGAAACGATCGTGCAGGCGCTCAGCCGGCCAGAAGGGTGGGATACGTG
774 ATGCCTAAATCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTA
* * *
14472222 AGATC-GGGATTGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACAGCAA
839 AG-CCAGGGATTGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAA
* * * * *
14472275 CCCTCGGTCAGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGG
1 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGA-CAAA--
* ** * * *
14472340 AGCGAGCGGGCGGGCGGGCGGGCAATACGTCAGCCAGAGAGACGGGATGTGCAAGTCGTGGATCG
63 A-CGA----GCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
14472405 ATAGGGTCGTAGGTGGGTTTAGGCACATCTTCCTATTTCTTCATGCCAATGCCATTTTTATGGCT
123 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
14472470 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTC
188 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTC
* ** *
14472535 TATTCTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
253 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTT
* ** * * *
14472600 TTGGCCCCAAACATGGTAGGTGTGATCCCTGTATTTTTGTTGGTATGCATAAAAAAATTCAGCTA
318 TTGGCCCCAAA-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
14472665 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTTAGACACTTTAA
382 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
14472730 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGAGTGCGAGTTCTTGAGGTT
447 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
14472795 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCGTCGCACATCATCTGCGCAC
512 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
14472860 ACCCCTTCAGCCCCCCGATCGTCGGATCCCCAATGTCG-CTGGTCAGGTTCTCTGGTGATGCTCC
577 ACCCC-CCAGCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGTGATGCTCC
14472924 GGCGATGGTGCCCTAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCC
640 GGCGATGGTGCCCTAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCC
* **
14472989 GCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACCAGGAATGAA
705 GCAACCCTCGGT-TGGTCCGATCTTAGAATG-GAATGAACTCCGTATGCTTAGACTGGGAATGAA
**
14473054 CTCCGTATGCCTAAATCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAACA
768 CTCCGTATGCCTAAATCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* * ** * * * *
14473119 TGCGTAAGTCAGAGATTGGTCGGGTCCCCTTTTACGTGCTGCCGATCCTACTGCCGCAA
833 TGCGTAAGCCAGGGATTGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAA
** * * *
14473178 CTATCGGTCCGATCCGGTCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAATCGACAAAACG
1 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACG
* * *
14473243 AGCGGGCAGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTG
66 AGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
** * * * *
14473308 GTAGGTGGGTTTAGGCACAAT-TTTGTATTTTTGCGTGCCAATGCCATTTTTATCGCATGTAAAT
131 GTAGGTGGGTTTAGGCAC-ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
** * * *
14473372 TCATACAATGGTCATTTAAGCTTTCATGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTT
195 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTT
* * * * *
14473437 CACGATTTTTGAAACTTTTTACGATTCGGGATTTTTTTAAATTTTTTCGAAAGGATTTTTGGCCC
260 CACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCC
* *
14473502 CAAATGTGGTAGACGTGATCTTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
325 CAAAT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
14473567 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAT
389 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
14473632 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAG
454 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
14473697 GGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
519 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
14473762 -GACCCCCCGATCGTCAGAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCCGGTGATGG
584 AG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGG
* ** *
14473826 TGCCGTAGCGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCT
648 TGCCCTAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCT
* * * *
14473891 CGGTCCGGTCTGATCTTATAATGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTAT
713 CGGT-TGGTCCGATCTTAGAAT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * **
14473956 GCCTATATCAACCAACGAAATGAGCGTGTGGGCGCTCAGCCGACCAGAGGGGCAACATGCGTAAG
776 GCCTAAATCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAG
* * * * *
14474021 CC-GAAGATT-AGTCGGGTCCCCCTCTACGTGCTGCTGATCCTACTACCACAA
841 CCAG-GGATTGA-CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAA
** * * * * *
14474072 CCCTCATTCCGATCCGGTCTTAGACTAGGAATGAACTCCGTATGCCAAAGCCAACCGACAAAACG
1 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACG
* * *
14474137 AACGGGCCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
66 AGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * *
14474202 GTAGGTGGGTTTAGGCACATTTTCATATTTTTGCATGCCAATGCCATTTTTATTGCATGTAAATT
131 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
** * * *
14474267 CATACAATGGTCATTTAAGCCTTCACGTGAAGTTTAATGGCAAGACTACTCATTTTTTATTTTTC
196 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTC
** ** *
14474332 TTGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCC
261 ACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCC
* *
14474396 CAAATGTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTC
325 CAAAT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
14474461 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTAT
389 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
14474526 TGGTAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
454 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
14474591 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCC
519 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC
* * * **
14474656 CGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTAGCGATG
583 CAGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATG
* * * * *
14474721 GTGCCC-CGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG-ATTGTACTGCCGCAA-
647 GTGCCCTAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCA-TGTGCTGCCGCAAC
14474783 CC-C--TTGGT-C---C--------G-ATG---T--G-AT-CTTAGACTGGGAATGAACTCCGTA
710 CCTCGGTTGGTCCGATCTTAGAATGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * **
14474825 TGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCTAGAGGGGCGGGATGCCCAA
775 TGCCTAAATCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAA
* * * * ** * ** *
14474889 GCCTGGGATCGACCGGGTCCCCCTCTGCGAGCTGTAGATCTTGCTGTCGAAA
840 GCCAGGGATTGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAA
* * * * * *
14474941 CGCTTGGTCCGGTCCAATGTTATATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACG
1 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGAC-AAA--
* * *
14475006 AGCGGGCAGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCAGTGGATCA
63 A-C--G-A-GCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * * *
14475071 ATAGGGTGGTAGGCGGGTTTAGGCACATCTTGATATTTCTACATGCCAATGCCATTTTCAAGGCT
123 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
14475136 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAG-CTGACTCGTTTT
188 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGAC-GACTCGTTTT
* * * * *
14475200 CTATTTTTCATGATTTTTGAAACTTTTTTTCGGTTTGGGATTTTTTAAAA-TTTTTTCAGAAGGA
252 CTATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGA-AAGGA
* ** *
14475264 TTTTTGGTACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAG
315 GTTTTGGCCCCAAA-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
14475329 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
379 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * **
14475394 TAATGGCTACTGGCAGCAAAACTGTAAAATTTCAAATGCTC-TTAAGGGGGCATGAGTTCTCGAG
444 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
14475458 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCG
509 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
14475523 CACAACCCCCC
574 CAC-ACCCCCC
14475534 CGGCGATGGT
Statistics
Matches: 3634, Mismatches: 438, Indels: 163
0.86 0.10 0.04
Matches are distributed among these distances:
867 12 0.00
868 457 0.13
869 203 0.06
870 56 0.02
871 5 0.00
872 3 0.00
873 4 0.00
874 4 0.00
875 5 0.00
876 50 0.01
877 283 0.08
878 188 0.05
879 1 0.00
887 2 0.00
890 1 0.00
891 3 0.00
892 2 0.00
893 6 0.00
894 813 0.22
895 637 0.18
896 107 0.03
898 1 0.00
899 6 0.00
900 1 0.00
902 7 0.00
903 760 0.21
904 15 0.00
905 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (891 bp):
CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACG
AGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCC
AAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG
CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGC
CCTAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGG
TTGGTCCGATCTTAGAATGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AATCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCAGG
GATTGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAA
Found at i:14473934 original size:26 final size:26
Alignment explanation
Indices: 14473905--14473962 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
14473895 CCGGTCTGAT
14473905 CTTATAATGGGAATGAACTCCGTATG
1 CTTATAATGGGAATGAACTCCGTATG
* * *
14473931 CTTAGACTGGGAATGAACTCTGTATG
1 CTTATAATGGGAATGAACTCCGTATG
*
14473957 CCTATA
1 CTTATA
14473963 TCAACCAACG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTATAATGGGAATGAACTCCGTATG
Found at i:14475653 original size:26 final size:26
Alignment explanation
Indices: 14475623--14475674 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14475613 CGGTCCGATA
* *
14475623 TTAGATTGGGAATGAACTTCATATGC
1 TTAGATTGGCAATGAACTCCATATGC
14475649 TTAGATTGGCAATGAACTCCATATGC
1 TTAGATTGGCAATGAACTCCATATGC
14475675 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (26 bp):
TTAGATTGGCAATGAACTCCATATGC
Found at i:14476391 original size:26 final size:25
Alignment explanation
Indices: 14476349--14476399 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
14476339 CCTATCCGAT
14476349 CTTAGACTAGAATGAACTCCATATG
1 CTTAGACTAGAATGAACTCCATATG
* *
14476374 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACT-AGAATGAACTCCATATG
14476400 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCATATG
Found at i:14477282 original size:26 final size:26
Alignment explanation
Indices: 14477244--14477294 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14477234 GGATCTGATC
* *
14477244 TTAGATAGGGAATGAACTCCGTATGG
1 TTAGATAGAGAATAAACTCCGTATGG
* *
14477270 TTAGATTGAGAATAAATTCCGTATG
1 TTAGATAGAGAATAAACTCCGTATG
14477295 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGATAGAGAATAAACTCCGTATGG
Found at i:14478173 original size:26 final size:26
Alignment explanation
Indices: 14478144--14478196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14478134 CTGGTCTAAT
*
14478144 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14478170 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14478196 C
1 C
14478197 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14479778 original size:898 final size:898
Alignment explanation
Indices: 14475648--14487250 Score: 6813
Period size: 898 Copynumber: 12.7 Consensus size: 898
14475638 ACTTCATATG
* * * * * *
14475648 CTTAGATTGGCAATGAACTCCATATGCCTAAGCCAACCGATG-AACGA---G-CGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGG
* * * *
14475708 CACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAC
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
**
14475773 GCACATCTTCATATTTCTGCGA-GCCAATATCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * **
14475837 CTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
14475902 CTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
14475967 GTGATCCCTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAAAACCCAAAGTGTACAAGAT
324 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * * * *
14476032 TTTGTGACCATTTGAAAAACGTATCCCGATTTCTGATAC-TTAATGGCTACTGGCAGTAAACCTA
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
14476096 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAC
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
14476161 TATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCCCCGACCCTCCCG
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCCCCGGCCCCCCCG
* * * * *
14476226 ATCACCGGAACCCTAATGCCGCCCGTCAGG---T-------T-CTCCGGCGATGGTACCCCGACG
580 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* * * * * *
14476280 AAGAAAAATGCGGCACCAGCACCTGGCAGAGCCCATCATGTGCTGCCGTAACCCTTGATCCTA--
645 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGT-CTAGG
* * * *
14476343 TCCGATCTTAGACT-AGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGT
709 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * ** *
14476407 CAACCAACGAAACGAGCATACGGGCACTCAGCAAGCCAGAGGGGCGGGATGCGCAAGCTGGGGAT
774 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * *
14476472 CAACCGGGTCCCCCTCTACGTGATACCGATCCTGCTGCCGCAACCCTCGGTTCAGTTTGAT
839 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCA-TTTGAT
* * * * * *
14476533 GTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACAGACGAAACAATCGGGTTAGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C--G--AGCGGACGGG
* * * * *
14476598 CGGGCGGGCACTACACCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGGTAGGGTGGTAGGT
58 AGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
14476663 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
123 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14476728 ATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCAAGATT
188 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * * *
14476793 TTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTAGAACGAGTTTTGGCCCCAAACTTG
253 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* *
14476858 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
318 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
14476923 CAAGATTTTGTGACCATTTGAAAAAAATGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCA
383 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
14476988 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
448 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
14477053 GGCCAATATAATGGCCAAGTACCAGCACCCATTGCACATCATATGCGCACACCCCCCGGCCCCCC
513 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* ** * * *
14477118 CGATCGCCGGAACCTCAATGCCACCGATCAGGTTCT-C--CGA---T-----GATAGTGCCCCTA
578 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
* * *
14477172 CGAAGAAAAATGCGGCACCAGCACAAG-CTCGAGCCCAGCATGTGCTGCCGTAATCCTC-GT-TC
643 CGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTA
* * * * *
14477234 GGATCTGATCTTAGA-TAGGGAATGAACTCCGTATGGTTAGATTGAGAATAAATTCCGTATGCCT
707 GG-TCTGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
14477298 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGAAAGCAGG
770 AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * **
14477363 GGATCGGTTGGGACCCCCTATGCGTGCTGCTGATCCTGCTACCGTAACCCTTGGTCCGATTTGAT
835 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCC-ATTTGAT
* * * *
14477428 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGG
*
14477493 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
14477558 GCAAATCTTCATATTTCTG-A-GCACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *** * *
14477621 CTTTAAGCCTTCACGTCAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCTTTATTCTTAAA
194 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * ** ** **
14477686 ACTTTTTACAGTTCAAGATTTTTTAAAATTTTGTCAGAAGGAGTTTTCACCCCAAACTTTTTAGA
259 ACTTTTTACGGTTCGAGATTTTTTAAAATTTT-TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * ** * *
14477751 CGTAATCCTTGTATTTTTATTCACGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGA
323 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
14477816 TTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCT
388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
14477881 CTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
14477946 ATATAAGTGCCAGGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCTCGAT
518 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* * * * *
14478011 CGTCGGAACCTCAATACCGTCGGTAAAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
582 CGCCGGAACCCCAATGCCGTCGGT-CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * *
14478076 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGGAACCCTCGGTCT-GGTC
646 AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGGTC
* * *
14478140 TAATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
711 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * *
14478205 ACCCACGAAACGAGCGTACGGGTGCTCAGCCGACGAGAGGGGCGGGATGCGTAAGCCGGGGATCG
776 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
14478270 ACCGGGTCCCCCTCTGCGTGCT----A-CC-G-T-----AACCCTCAGTCCGGTCTGAC
841 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCC-ATTTGAT
* * *
14478317 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCAAGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG--A-CGGGAGGG
* * * *
14478382 CGGGCACTATGCCGGCCATAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
14478447 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14478512 TCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * * *
14478577 AAACTTTTTGCAGTTTGTGATTTTTTAAAATTTTATCGGAAGAAGTTTTGGCCCCAAACTTGGAA
257 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTT-TTGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
14478642 GACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAATATTCAGCTAAAAACTCGAAGTGTACA
321 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACA
* * *
14478706 AGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTCAATGGGTACTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14478771 TCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
14478836 CCAATATAAGGGCCAAGTACCAGCTCCCATCACACATTATGTGCGCACACCCCCCGGCCCCCCCG
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * * *
14478901 ATCGCCAGG-ACCCCAATGCTGTCAGTCAGGTTCTCTGACGATGCACCGACGATGGTGCCTCGAC
580 ATCGCC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * * * **
14478965 GAAGAAAAAAGGGGCACCAGCATATGCCTGAGCCTAGCATGTGCTGCCATAACCCTCGGTCTATT
644 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGG
* *
14479030 TC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
709 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * * *
14479094 CAACAAACGAAACGAGCGTGCAGGCACTCAGCCGGACAGAGGGGTGGCATGCGCAAGCCGGGGAT
774 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * *
14479159 CGATCGGGTCCCCCTCTGCGTGTTGCCGATCTTGCTACTGCAACACC-CAGTCCATTTGGAT
839 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAAC-CCTCAGTCCATTT-GAT
* *
14479220 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAGCGGACGGGAGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGG
* * ** *
14479285 CACTACACCGACCAGAGAGACGGGATATGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
14479350 GCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATAAAATGGTTCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
14479415 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAA
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAA
* **
14479479 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTATTAGACG
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
14479544 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
14479609 TTGTGACTATTTGAAAAAAGTTTCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
14479673 TAAAATCTCAAATGCTCTTTACGAGGGTGTGAGTTCTCAAGGTTTGATG-GCGGATAAGGGGCCA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GGATAGGGGGCCA
* *
14479737 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCTCGCCCGAT
518 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGAT
* ** * *
14479802 CGTCGGAACCCCAA-----T--GTC--G---TCCGACGA---T-------T-GTAACACGATGAA
582 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
** * ** * *
14479844 GAAAAATATGACACCAGCACATGTCC-GAGCCCAGCATGTGCTATCGTAACTCTCGGTC-CGGTC
647 GAAAAATGCGGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGGTC
* * *
14479907 TGATTTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
711 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
14479972 ACCCACGAAACAAGCGTGCGGGCGCTCCGCCGGCCAGAGGGGCGGG-TGCTCTTTAAG--GGGG-
776 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGC---AAGCCGGGGA
* * * * ** ** * * ** * * *
14480033 TC--T-GAGT---TCT-TGAGGTTTGATGAGGGAT-AGGGT-GC-CAA-TATAAAGGCCA--AG-
838 TCGATCGGGTCCCCCTCTG-CG--TGCTG-CCGATCCTGCTACCGCAACCCT-CAGTCCATTTGA
14480084 T
898 T
** ** * * * * * ** * **** * * * **
14480085 AATAGCAC---CCATCGCACAT-CATGTGCGCACAACCCCCCCGGCCCCCCGATC-GTCGGAACC
1 CTTAG-ACTGGGAAT-GAAC-TCCGTATGC-C-TAAGCCAACCGACGAAACGAGCGGACGGGAGG
* ** * * * * ** *
14480145 CCAATGC-C-ACCGGTCAGGTTCTCCAGTGATACTCCGGTGATG-G--TGCCCCGG-T-GA-AGA
61 GC-GGGCACTA-C-G-CCGG----CCAGAGAGA---CGG-GATGCGCAAGCCGTGGATCGATAGG
**** * **** * *** * * * * **** * **
14480202 AAAATA--CGGCACCA-GCACATGC-TC-GAGCCCAGCATGAGCTA-CCGCAACCCT-CGGTCCA
114 GTGGTAGGTGGGTTTAGGCACAT-CTTCATATTTCTGCATG-CCAATGC-CATTTTTATGG-CTT
* * * * *** * * ** *
14480260 GTCCAA-TCTTAGACTGG-GAATGAA--C-TC-CGT-ATGCTTAGACTGGGAATGA--ACTCCGT
175 GT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCA-TGGCAA-GACGACT-CGT
** ** ** * * * **** * *** *
14480316 ATGCCTA--AGTCA--ACCTATGAAAC----GA-GCGTGCG-G--GCGCT--CA---GCCGGCCA
235 -TTTCTATTTTTCACGATTTTTGAAACTTTTTACG-GTTCGAGATTTTTTAAAATTTTTTGG-AA
* * * * * * ***** * * *
14480364 -GAG----GG-GCGAGA--TGCGTAAGGCGAGGATCGACTGGGT-CCCCCTCT-GCGTGCTGC--
297 GGAGTTTTGGCCCCAAACTTG-GT-AGACG-TGATC--CT-TGTATTTTTTTTGGCATGC-ACAA
* * * * *** * * * **
14480417 --ATATCCTGCTACCACAACCCTCGGCTTGGTGC--GATCTT-AGA-C-TGGGAATGAAATCTA-
355 AAAAATTCAGCTA--A-AA-ACTCGAAGT-GTACAAGATTTTGTGACCATTTGAA--AAA---AG
* * * ** * ** * * * * *** ** * ** * **
14480474 TATGCCTA-AGCCGACCGAC-GAAACGAGCGAGCGGGCGGGCGGGCAGGCACTA-CGC--CGGC-
410 TGTCCCCATTTCAGA-C-ACTTTAATG-GCTA-CTGGC-AGCAAACCTGTAAAATCTCAAATGCT
** * * * * *** *** *
14480533 C-AGAGAGGCGGGATGCGCAAG--C-C-ATGGATCGATAGAGTGG-TAGGTTGGTTTAGGCACAT
470 CTTTA-AGG-GGG-TGTG--AGTTCTCGA-GGTTTGAT-GAG-GGATAGG-GGGCCAATATA-AG
*** ** * * * * * ** ***
14480592 CTTCATA-TTTCTGCATGCCAAT-GC-CATTTTTATG-GCTTGTAAATTTATACAGTGGTCCCTT
525 GGCCA-AGTACCAGCA--CCCATCGCACA---TCATGTGC--G--CA--CACCCCCCGG-CCC--
** * * * ** * * **** * * ***
14480653 AAGCC-TTCACGGGAAGTTTCTTGGCAA-GACGACTCGTTTTTTATTTTTC-ACGAT--TTTTGC
575 -CCCCGATCGCCGGAA----C--CCCAATGCCG--TCG-GTCAGGTTCTCCGACGATGCTCCGGC
* * *** * * * * ** ** * * * **
14480713 AACT-TTTTACGGTTCG-AGATTTTTCAAAATTTTTTCGGAAGGAGTTTTCGTGCC-AAACCTGG
630 GA-TGGTGCCCCG-ACGAAGA------AAAA----TGCGGCACCAG--CACATGCCTGAGCCCAG
* * ** ** **** * * ** *
14480775 TATATG-TGATCCTTGT-A-TTTTTGT-T-GG-CATGCAAAAAACAAATCAGCCAA-AAACT-CG
681 CATGTGCTG--CC--GTAACCCTCGGTCTAGGTC-TG---ATCTTAGA-CTGGGAATGAACTCCG
* * * * **** * * * ** * ** *
14480832 AACTG-TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGA--CACTTTAATG-GC
737 TA-TGCT--TAGA--CTGGGA--A--TGAACTCCGTATGCCTAAGTCA-ACCCAC-GAAACGAGC
* * * * * * * * * **
14480893 -TACTGGCAACAAATTTGTAATATCTCAAAAGCTCTTTA-AGGGGATGTGAGTTCTCAAGGTTTG
791 GTGCGGGC-AC-------T--CAGC-C---GGC-C---AGAGGGG-CGGGA-TGCGCAA-G-CCG
** ** * * ** * ** * *
14480956 ATGAGGGATAGGGGCCCAATATAAG-G--GCCAAGTACCAGC-ACC-CAACGCACATCATGTGCG
834 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA-T-CCTGCTACCGCAAC-C-C-TCA-GT-C-
******
14481016 CACACCCC
891 CATTTGAT
*** * * * * ** * * * ** ** * **
14481024 CCCCGGCCGCCCCGATCACCGAAAC-CCCAATACCGTCAGTCAGGTTCTCCG--ACGTTGC-TCC
1 CTTAGACTG---GGA--A-TG-AACTCCGTATGCC-TAAGCCA--ACCGACGAAACG-AGCGGAC
* * * * * * * *
14481085 GGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
55 GG-GA-GG-G---CG--G--G--CACTA---CGCCGGC-CA-G--AGAG-ACGGGA--TGC-GC-
* * * ** * ** * * * * * * *
14481150 ACAACCCTCGG-TCTGGTCCGATCTTAGACTGGG--AATG-A-A-CTCCGTATGCCTATGCCGAC
96 A-AGCCGT-GGATC-GATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATAT--TTCTG-C-A-
* * * *** ***** ** * * *** ** * ***
14481209 CGACGAAACGAGCGGGTGGGCGGGCGGGCAGGCATGT-ACTACGCCGG--CCAGAGAGACGGGAT
152 TG-C-CAA--TGCCATTTTTATGGCTTGTA--AAT-TCA-TACAATGGTCCCTTA-AGCCTTCA-
* * ** * * * *** *** *
14481271 GCGT-AAG--CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTGCATCATCATATTTCTATGTG
207 -CGTGAAGTTTCATGG--C-A-A--GACG-A-CTCGTTTTCTATTTTTCA-C-GA-TT-T-T-TG
* * * ** * ** ***** ** **
14481333 CCAATGCCATTTTTATGGCTT-GTA-AATTCATACAATGGTCCCTTA--AGCCTT--CCCGTGAA
257 --AA--AC-TTTTTACGG-TTCG-AGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCC-CAAA
* * * ** * ** * **** *
14481392 GTTTG-ATGCCAAGA-CGACTTGTTTTTTTATTTTTCATG-ATTTTTGAAACTTTTTGCAGTTCA
314 CTTGGTA-GACGTGATC--CTTGTATTTTT-TTTGGCATGCA-----CAAAAAAATT-CAGCT-A
**** ** * * * * * * ** * * *
14481454 GGATTTTTTAAAATTTTTTCGAAAGGGTTTT-TGGCTTCAAACTTGGCAGACGTGATCCTCGTAT
368 --A-AAACTCGAA-GTGTAC--AA-GATTTTGTGAC--C--ATTTGAAAAAAGTG-TCC-C-CA-
** ** ***** * ***
14481518 TTTTGTTGACA-TGCACCAAAAAAAAT--CAGCTAAAAACTCCAAGTGTACAAGAT-T-TTGTGA
418 -TTT-CAGACACTTTA--ATGGCTACTGGCAGC---AAA--CC---TGTA-AA-ATCTCAAATG-
**** * ** * * **
14481578 C-CATTTGAAAAAAGTGTCCCCA-TT-TCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
468 CTC-TTT-AAGGGGGTGT---GAGTTCTC-GA-GGTTTGA-TG--A--GG--G-ATA---G--GG
** * ** * * *** *
14481640 ATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC-CAAT-A
513 GGC-C-AA-----TATAAGGGCCA---AGTAC-C-A-G---CA-CCC--AT----CGCAC-ATCA
* * * * ** * ** *
14481703 TAAGGGCCAAGTACCAACACCCAACACACATCATGTGTGCACACC-CCCCCCGGCCCCCCCGATC
554 T--GTG-C--G---C-ACA-CC--C-C-C--C--G-G-CCCCCCCGATCGCCGG-AACCCCAAT-
* * ** * * * * * * * * **
14481767 ACCGAAAC-CCCA-ATGCCGTCAGTCAGGTTCTCCGACGATGCTCAGGTGATAGTGACCCGGTGA
597 GCCG--TCGGTCAGGT-TC-TCCGAC-GATGCTCCG--GC-G---A--TG---GTGCCCCGACGA
* * * * * * *
14481830 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCTTAGGT-TCGGTC
646 AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGGTC
* *
14481894 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
711 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
14481959 ACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCG
776 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * * *
14482024 ATCAGGTCACCCTCTGCATGCTGCCGATCCTGCTGCTGTAACCCTCAGTCTAGTTCGAT
841 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCA-TTTGAT
* * * *
14482083 CTTAGACTGGGAATGAATTTCGTATGCCTAAACCAACCGATGAAACAGACGGGCGGACGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-A-A----C-GA---GCGGA
*
14482148 CGGGCGGACGGGCGGACGGGCGGACGAGCGGACGGACGGACGGGCCAGAGAGACGGGATGCGCAA
54 C--G-GGA---G-GG-C--G-GG-C-A-C-TAC-G-C---C-GGCCAGAGAGACGGGATGCGCAA
* *
14482213 GCCATGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
98 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
14482278 TTTTTAGGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGAC
163 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * *
14482343 GACTCGTCTTCTATTTTTCACGATTTTCCAAAATTTTTACGGTTTGTGATTTTTTAAAATTTTTT
228 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
14482408 CGGAAGGATTTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
293 -GGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
14482473 GAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
356 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14482538 CAGACACTTTAATGGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGCGAGTGTGA
421 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14482603 GTTCTTGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACA
486 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14482668 TTATGTGCGTACACCCCCTCAG-CCCCCCGATCACCGGAACCCCAATACCGTCAGTACCTTAATG
551 TCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCC-A-A---T--G--CC-----G
* * * * ** * **
14482732 CCATCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGTCATGATGAAGAAAAATGCATCACCA
601 ---TCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* ** * * *
14482797 GCACATGCCTGAGCCCATCATGTGCTATCGTAACCCT-GGTCCA-GTCCGATCTTCGACTGGGAA
663 GCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGGTCTGATCTTAGACTGGGAA
* * *
14482860 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGT
728 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * * *
14482925 GCAGGCACTCAGCCAGCCAGAGGGGTGAGATGCGTAAGCCAGGGATCGATCGGGTCCTCCTTTAC
793 GCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGC
* * * * ** *
14482990 GTGCTACCGATCCTGCTGCCACAACCTTCAGTCTGGTTCGAT
858 GTGCTGCCGATCCTGCTACCGCAACCCTCAGTC-CATTTGAT
* * * ** **
14483032 CTTGGACTGGGACTGAACTCCGTATGCCTAAGACAACTAACGAAACGAATG-GGTGGGCGGACGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCGG-ACG-GGA-GG
*
14483096 GCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
61 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** **
14483161 TTTCGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTACAGCTTGTAAATTCATACAATG
126 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *** * * *
14483226 GTCGCTTAAGCCTTCACCAAAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACAATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
14483291 GAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGT
256 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGT
* *
14483356 AGACGTGATCCTTGTATTTTTTTTTGGCATCCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAC
320 AGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14483421 AAGATTTTGTGACCATTTGGAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAA
384 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
14483486 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGAGG
449 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
14483551 GCCAATATAGGGGCCAAGTGCCAGCACCCATTGCACATCATGTGTGCACA--------CCCCCCC
514 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* *
14483608 GATTGCCGGAACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGAC
579 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * * * * *
14483672 GAAGAAACATGCAGCACCAGCACATGCCTGAGCCTAGCATGTGCTGTCGCAACCCTCAGT-TTGG
644 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGG
* * **
14483736 TCTGATCTTAGACTGGGAATGAACTCTGTTTGCTTAGACTGGGAATGAACTCTATATGCCTAAGT
709 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * *
14483801 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCAGGGGAT
774 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * ** * *
14483866 CGGCCGAGTCCCCTTCTGTGTGCTGCCGATCCTGCTACCAAAACCCTC-GATCCGGTCTGAT
839 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-TCC-ATTTGAT
* * * * *
14483927 CTTAGACTGGGAATGAACTTCGTA-GCCTATGCCAACCGACGAAATGAGTGGGTATTGCGGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGG-A-CG-GGAG-G
* * * *
14483991 ACGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG-CGT-TATCGATAGGGT-GTAGGTGGG
61 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * **
14484053 TTTCGGCACATCGTCGTATTT-TGTGTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
126 TTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
14484117 GGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
190 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
14484182 TGAAACTTTTTACGGTTC-AGAATTTTTTAAAATTTTTTTGAAAGGAGTTCTGGCACCAAACTTG
255 TGAAACTTTTTACGGTTCGAG-ATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* * *
14484246 GTAGACGTGATCCTTGTATTTTTGTGGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
318 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
14484311 CAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCA
383 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
14484376 AACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
448 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* ** *
14484441 GGCCAATATAAAGATCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCC
513 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * **
14484506 C-ATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGA
578 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
*
14484570 CGAAGAAAAATGCGGCACCAGCACATG-CTCGAGCCC-GACATGTGCTGCC-TCAACCCTTGGTC
643 CGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAG-CATGTGCTGCCGT-AACCCTCGGTC
* * *
14484632 -CGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
705 TAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * ***
14484696 AAGTTAACCCATGAAACAAGCGTGCGGG-ACTCAACCGGCCAGAGGGGCGGGATGCGTAAGTTAG
770 AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * ** *
14484760 GGATTGACCGGGTCCCCCTATGCGTGCTACCGATCCTACTACCGCAACCCTTAGTCTGGTCTGAT
835 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTC-CATTTGAT
* * * * * *
14484825 GTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAACGACGAAATGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGG
* * *
14484890 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
14484955 GTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
14485020 TTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
14485085 TTTTTACGGTTCGAGATTTTTGAAAATTTTTTCGTAAGGAGTTTTGGCCCCAAACTTGGTAGATG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
14485150 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
14485215 TTGTAACCATTTGAAAAAAGTGTCCCCATTTC-GAAAACTTTAATGGCTACTGGCAGCAAACCTG
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTG
* ** * ** *
14485279 TAAAATCTCAAATGCTCTTTAA-GGGGTATGAGTTCTTAAGGTTCGATGAGCAATAGAGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
14485343 TATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCG
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * * ** **
14485408 CCAGAACCCCAATACCGTTGGTCAGATTCTTCGGTGATGCTCCGATGATGGTGCCCCGACGAAGA
584 CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * * * ** * * * *
14485473 AAAATGAGACACCAGCATATGCCCGAGCCTAGCATGTGCTATCGCAACCCTCGGTC-CGATGC-A
649 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGGT-CTG
* * *
14485536 ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGCGAATGAACTTCGTATGCCTAAGTCAAC
713 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
14485601 CCGCGAAACGAGCGTGCGGACACTTAGCTGGCCTGAGGGGCGGGATGCACAAGCCGGGTATCGGT
778 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * ** * * * ** ** **
14485666 CGGGTCCCCCTCTGCATGCTTCCAATCCTATTGCCGCTACTCTTGGTCTGGTCCGAT
843 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTC-CATTTGAT
* ** * *
14485723 CTTAGACTGGGAATGAACTCTGTATAACTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC----GGGAGGG
** *
14485788 CGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
14485853 TTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTTAAACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
14485918 TCCCTTACGACTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
14485983 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTCGCTA
257 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
14486048 GATGTGATCCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAA
321 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14486113 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGTAAAC
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14486178 CTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGC
451 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** * * *
14486243 CAATATAAGGGTGAAGTACCAGCACCCATCGCATATCATGTGCGCAC-CCCCCCGG-CCGCCCTA
516 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * * * **
14486306 TCGTCGAAACCCCAATGCCGGCAGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGGGGA
581 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * * * *
14486371 AGAAAAATGTGGCACTAGCACATGCCCGAGCCTAGTATGTGCTGCTGGAACCCTCGGTC-GGGTC
646 AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGGTC
*
14486435 TGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
711 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
14486500 ACCCACGAAACAAGCGTGTGGGCTCTCAGCCGGCCTGAGGGGTGGGATGCGTAAGTCGAGGATCG
776 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** * * ** * *
14486565 ATCGGGT-GACCTCTGTGTGCTGCCGATCCTGCTATCGCAACCCTTGGTCTGATCTGAT
841 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTC-CATTTGAT
* * * * *
14486623 CTTAGACTAGGAATGAACTCCATCTACCTAAGCCAACCGACGAAACGAACGGGTGGACGGGCA-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGACGGG-AGG
* *
14486687 GCGGGCATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
61 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
***
14486752 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
126 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
14486817 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGTCTCATTTTTTATTTTTCACAATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
** * * *
14486882 GAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGT
256 GAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
*
14486947 AGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
320 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * * *
14487012 AGATTTTGTGACAATTTGAAAAAAGTGTCCTCATTTCAGACTCTTTAATGGCTACTGGTAGCATA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14487077 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** *
14487142 CCAATATAAGGGTGAAGTACCAGCACCCATCGCACATCATGTGCGCACTCCCCCCTGGCCCCCCC
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCC
* * * * *
14487207 AATCGTCGGAACCCTAATACCGTCGATCAGGTTCTCCGACGATG
579 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
14487251 GTGCCCCGAT
Statistics
Matches: 8268, Mismatches: 1746, Indels: 1390
0.73 0.15 0.12
Matches are distributed among these distances:
840 1 0.00
841 12 0.00
842 7 0.00
843 13 0.00
844 17 0.00
845 32 0.00
846 19 0.00
847 18 0.00
848 19 0.00
849 3 0.00
850 7 0.00
851 4 0.00
852 2 0.00
854 3 0.00
855 6 0.00
856 4 0.00
858 6 0.00
859 7 0.00
860 5 0.00
861 12 0.00
862 11 0.00
863 9 0.00
864 12 0.00
865 27 0.00
866 39 0.00
867 8 0.00
868 2 0.00
869 15 0.00
870 3 0.00
871 14 0.00
872 10 0.00
873 2 0.00
874 4 0.00
875 11 0.00
876 156 0.02
877 7 0.00
878 6 0.00
885 37 0.00
886 6 0.00
887 227 0.03
888 245 0.03
889 101 0.01
890 11 0.00
891 432 0.05
892 240 0.03
893 478 0.06
894 261 0.03
895 413 0.05
896 120 0.01
897 646 0.08
898 861 0.10
899 442 0.05
900 550 0.07
901 442 0.05
902 411 0.05
903 181 0.02
904 6 0.00
905 7 0.00
906 6 0.00
907 15 0.00
908 1 0.00
910 1 0.00
911 1 0.00
912 19 0.00
913 1 0.00
915 1 0.00
916 1 0.00
919 35 0.00
920 410 0.05
922 7 0.00
923 4 0.00
924 1 0.00
925 5 0.00
926 4 0.00
927 2 0.00
928 3 0.00
929 2 0.00
930 10 0.00
931 1 0.00
933 4 0.00
934 5 0.00
935 2 0.00
936 2 0.00
937 5 0.00
938 3 0.00
939 2 0.00
940 1 0.00
941 2 0.00
945 6 0.00
946 10 0.00
947 6 0.00
948 8 0.00
949 205 0.02
950 56 0.01
952 1 0.00
953 5 0.00
954 1 0.00
955 4 0.00
956 6 0.00
957 3 0.00
958 5 0.00
959 9 0.00
960 1 0.00
961 9 0.00
962 6 0.00
963 4 0.00
964 4 0.00
965 4 0.00
966 3 0.00
967 6 0.00
968 8 0.00
969 2 0.00
970 3 0.00
971 5 0.00
972 1 0.00
973 2 0.00
974 2 0.00
976 2 0.00
977 5 0.00
978 3 0.00
979 8 0.00
980 4 0.00
981 4 0.00
983 8 0.00
984 1 0.00
985 6 0.00
986 1 0.00
988 3 0.00
989 3 0.00
990 5 0.00
992 1 0.00
994 1 0.00
995 2 0.00
996 2 0.00
998 4 0.00
1000 3 0.00
1002 3 0.00
1003 5 0.00
1004 4 0.00
1005 1 0.00
1006 9 0.00
1007 10 0.00
1008 8 0.00
1010 1 0.00
1011 2 0.00
1012 1 0.00
1013 5 0.00
1014 6 0.00
1015 11 0.00
1016 15 0.00
1017 6 0.00
1018 2 0.00
1019 2 0.00
1020 3 0.00
1021 9 0.00
1023 1 0.00
1024 96 0.01
1025 89 0.01
1026 110 0.01
1027 85 0.01
1028 80 0.01
1029 90 0.01
1030 88 0.01
1031 100 0.01
1032 107 0.01
1033 118 0.01
1034 136 0.02
1035 100 0.01
1036 84 0.01
1037 97 0.01
1038 88 0.01
1039 78 0.01
1040 71 0.01
1041 65 0.01
1042 91 0.01
1043 71 0.01
1044 54 0.01
1045 62 0.01
1046 22 0.00
1047 26 0.00
1048 138 0.02
1049 35 0.00
1050 57 0.01
1051 32 0.00
1052 41 0.00
1053 88 0.01
1054 107 0.01
1055 38 0.00
1056 29 0.00
1057 23 0.00
1058 21 0.00
1059 52 0.01
1060 38 0.00
1061 71 0.01
1062 28 0.00
1063 117 0.01
1064 60 0.01
1065 58 0.01
1066 26 0.00
1067 41 0.00
1068 35 0.00
1069 10 0.00
1070 28 0.00
1071 67 0.01
1072 20 0.00
1073 8 0.00
1074 13 0.00
1075 17 0.00
1076 18 0.00
1077 5 0.00
1078 17 0.00
1079 5 0.00
1080 19 0.00
1081 21 0.00
1082 25 0.00
1083 20 0.00
1084 8 0.00
1085 15 0.00
1086 49 0.01
1087 154 0.02
1088 9 0.00
1089 11 0.00
1090 19 0.00
1091 9 0.00
1092 2 0.00
1093 3 0.00
1095 4 0.00
1096 1 0.00
1097 1 0.00
1100 1 0.00
1101 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCATTTGAT
Found at i:14479949 original size:26 final size:26
Alignment explanation
Indices: 14479912--14479963 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14479902 CGGTCTGATT
*
14479912 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
*
14479938 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
14479964 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:14480303 original size:26 final size:26
Alignment explanation
Indices: 14480267--14480319 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14480257 CCAGTCCAAT
14480267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14480293 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14480319 C
1 C
14480320 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14482143 original size:8 final size:8
Alignment explanation
Indices: 14482130--14482192 Score: 108
Period size: 8 Copynumber: 7.9 Consensus size: 8
14482120 CGATGAAACA
14482130 GACGGGCG
1 GACGGGCG
14482138 GACGGGCG
1 GACGGGCG
14482146 GACGGGCG
1 GACGGGCG
14482154 GACGGGCG
1 GACGGGCG
14482162 GACGGGCG
1 GACGGGCG
*
14482170 GACGAGCG
1 GACGGGCG
*
14482178 GACGGACG
1 GACGGGCG
14482186 GACGGGC
1 GACGGGC
14482193 CAGAGAGACG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 51 1.00
ACGTcount: A:0.16, C:0.25, G:0.59, T:0.00
Consensus pattern (8 bp):
GACGGGCG
Found at i:14484681 original size:26 final size:26
Alignment explanation
Indices: 14484641--14484693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14484631 CCGGTCTGAT
*
14484641 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
14484667 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14484693 C
1 C
14484694 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14485567 original size:26 final size:26
Alignment explanation
Indices: 14485538--14485587 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14485528 CCGATGCAAT
*
14485538 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGCGAATGAACTCCGTACG
*
14485564 CTTAGACTGCGAATGAACTTCGTA
1 CTTAGACTGCGAATGAACTCCGTA
14485588 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTACG
Found at i:14486475 original size:26 final size:26
Alignment explanation
Indices: 14486439--14486488 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14486429 CGGGTCTGAT
14486439 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
14486465 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14486489 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:14486882 original size:900 final size:899
Alignment explanation
Indices: 14481151--14487357 Score: 7600
Period size: 900 Copynumber: 6.8 Consensus size: 899
14481141 TGTGCTGCTA
* * * *
14481151 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCGACCGACGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
14481216 ACGAGCGGGTGGGCGGGCGGGCAGGCATGTACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCG
66 ACGAACGGGTGGGCGGGCGGGC-GG---GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCG
** * *
14481281 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTGCATCATCATATTTCTATGTGCCAATGCCATTTT
127 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* * *
14481346 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTGAAGTTTGATGCCAAGACGACT
192 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-
** * * * *
14481411 TGTTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTTC-AGGATTTTTTAAAATTTTTTCG
256 TCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCG
** * * * *
14481475 AAAGG-GTTTTTGGCTTCAAACTTGGCAGACGTGATCCTCGTATTTTTGTTGACATGCACCAAAA
320 -AAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-CAAAA
* *
14481539 AAAATCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
382 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14481604 AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAG
447 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
14481669 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCAACACACAT
512 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACAT
* * *
14481734 CATGTGTGCACACCCCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCAGTCAGGTTCTC
577 CA--TGTGCGCA-CCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTC
* * * ** * *
14481799 CGACGATGCTCAGGTGATAGTGACCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
638 CGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTA
* * * *
14481864 GCATGTGCTGTCGCAACCTTAGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
703 GCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
14481929 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCC
768 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCC
* * * *
14481994 AGAGGGGCGGGATGCGTAAGTCGGGGATCGATCAGGTCACCCTCTGCATGCTGCCGATCCTGCTG
833 AGAGGGGCGGGATGCGTAAGTCGAGGATCGATCGGGTC-CCCTCTGCGTGCTGCCGATCCTGCTA
*
14482059 CTG
897 CCG
* ** * * * * *
14482062 TAACCCTCAGTCTAGT-TCGATCTTAGACTGGGAATGAATTTCGTATGCCTAAACCAACCGATGA
1 CAACCCTTGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
14482126 AACAGACGGGCGGACGGGCGGACGGGCGGACGGGCGGACGGGCGGACGAGCGGACGGACGGACGG
65 AAC-GA-------A----CGG--GTG-GG-C--G-GG-CGGGC-G--G-GC--AC-TAC-G-CTG
* *
14482191 GCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTC
101 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * *
14482256 ATATTTCTGCATGCCAATGCCATTTTTAGGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
166 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * ** *
14482321 GCGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCACGATTTTCCAAAATTTTTACGGT
231 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * *
14482386 TTGTGATTTTTTAAAATTTTTTCGGAAGGATTTTTTTGCCCCAAACTTGGTAGACGTGATCCTTG
296 TCGAGATTTTTTAAAATTTTTTC-GAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
14482451 TATTTTTTTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
359 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
14482516 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCCGTAAAATCTCA
424 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * * *
14482581 AATGCTCTTTAAGCGAGTGTGAGTTCTTGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCC
489 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTC
* * * * *
14482646 AAGTACCAGTACCCATCGCACATTATGTGCGTACACCCCCTCAGCCCCCCGATCACCGGAACCCC
554 AAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCGGCCCCCCGATCGCCGGAACCCC
* * * * **
14482711 AATACCGTCAGTACCTTAATGCCATCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGTCATG
617 -A-A---T--G--CC-----G---TCAGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCG
* ** * * * * * *
14482776 ATGAAGAAAAATGCATCACCAGCACATGCCTGAGCCCATCATGTGCTATCGTAACCCT-GGTCCA
665 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCG
* * *
14482840 GTCCGATCTTCGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAG
730 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
14482905 TCAACCCATGAAATGAGCGTGCAGGCACTCAGCCAGCCAGAGGGGTGAGATGCGTAAG-CCAGGG
795 TCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGA-GG
* * * * *
14482969 ATCGATCGGGTCCTCCTTTACGTGCTACCGATCCTGCTGCCA
859 ATCGATCGGGTCC-CCTCTGCGTGCTGCCGATCCTGCTACCG
* * * * **
14483011 CAA-CCTTCAGTCTGGT-TCGATCTTGGACTGGGACTGAACTCCGTATGCCTAAGACAACTAACG
1 CAACCCTT-GGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
14483074 AAACGAATGGGTGGGCGGACGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTG
64 AAACGAACGGGTGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
14483139 GATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
** * *** *
14483204 CAGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACCAAAAGTTTCATGGCAAGATGACTCA
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* * *
14483269 TTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAG
259 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAG
* *
14483334 GAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATCCACAAAAAAATT
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATT
* * *
14483399 CAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCAATTCAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
14483464 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCC
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * * * *
14483529 AAGGTTTGATGAGGGATAGAGGGCCAATATAGGGGCCAAGTGCCAGCACCCATTGCACATCATGT
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGT
* * * *
14483594 GTGCA----CAC--CCCCCCGATTGCCGGAACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGC
582 GCGCACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGC
* * * * *
14483652 TCCGGCGATGGTGCCCTGACGAAGAAACATGCAGCACCAGCACATGCCTGAGCCTAGCATGTGCT
647 TCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCT
* ** * *
14483717 GTCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTTTGCTTAGACTGGGAAT
712 GTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
** * ** * *
14483782 GAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGTG
777 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCG
* * ** * * *
14483847 GGATGCGCAAG-CAGGGGATCGGCCGAGTCCCCTTCTGTGTGCTGCCGATCCTGCTACCA
842 GGATGCGTAAGTC-GAGGATCGATCGGGTCCCC-TCTGCGTGCTGCCGATCCTGCTACCG
* * * * * *
14483906 AAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTA-GCCTATGCCAACCGACGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** ** * *
14483970 ATGAGTGGGTATTGCGGAGC-GACGGGCACTACG-TCGGCCAGAGAGGCGGGATGCGCAAG-CGT
66 ACGAACGGGT-GGGCGG-GCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
14484032 -TATCGATAGGGT-GTAGGTGGGTTTCGGCACATCGTCGTATTT-TGTGTTGCCAATGCCATTTT
128 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTG-TGCCAATGCCATTTT
* *
14484094 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACT
192 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
14484159 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGAATTTTTTAAAATTTTTTTGA
257 CATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCG-
* * * * *
14484223 AAGGAGTTCTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCATAAAAAAA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* *
14484288 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTGAGA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
14484353 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTC
450 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
14484418 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGATCAAGTACCAGCACCCATCGCACATCAT
515 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCAT
* * * * *
14484483 GTGTGCACACCCCCCGGCCCCCCCATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGA
580 GTGCGCAC-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGA
* * *
14484548 TGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCC-CGACATG
644 TGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAG-CATG
* * * * *
14484612 TGCTGCCTCAACCCTTGGTCCGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGG
708 TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
14484677 GAATGAACTCCGTATGCCTAAGTTAACCCATGAAACAAGCGTGCGGG-ACTCAACCGGCCAGAGG
773 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGG
* * * * * *
14484741 GGCGGGATGCGTAAGT-TAGGGATTGACCGGGTCCCCCTATGCGTGCTACCGATCCTACTACCG
838 GGCGGGATGCGTAAGTCGA-GGATCGATCGGGT-CCCCTCTGCGTGCTGCCGATCCTGCTACCG
* * * *
14484804 CAACCCTTAGTCTGGTCTGATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAACGACGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
14484869 ATG-A---GCGGGCGGGCGGGCGGGCACTACG-TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
66 ACGAACGGGTGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * **
14484929 ATCGATAGAGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* *
14484994 GGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCAT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
*
14485059 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTCGTAAGG
260 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-AAGG
*
14485124 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* *
14485189 GCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTC-GAAAAC
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACAC
* **
14485253 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTATGAGTTCTTA
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* ** *
14485317 AGGTTCGATGAGCAATAGAGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTG
* * * ** * * **
14485382 CGCACACCCCCTGGCCCCCCCGATCGCCAGAACCCCAATACCGTTGGTCAGATTCTTCGGTGATG
583 CGCAC-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATG
* * * *
14485447 CTCCGATGATGGTGCCCCGACGAAGAAAAATGAGACACCAGCATATGCCCGAGCCTAGCATGTGC
646 CTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGC
* * * * *
14485512 TATCGCAACCCTCGGTCCGATGC-AATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGCGA
711 TGTCGCAACCCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * *
14485576 ATGAACTTCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGACACTTAGCTGGCCTGAGGGG
775 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGG
** * * * * * ** *
14485641 CGGGATGCACAAGCCG-GGTATCGGTCGGGTCCCCCTCTGCATGCTTCCAATCCTATTGCCG
840 CGGGATGCGTAAGTCGAGG-ATCGATCGGGT-CCCCTCTGCGTGCTGCCGATCCTGCTACCG
* * * * **
14485702 CTACTCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATAACTAAGCCAACCGACGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
14485767 ACGAGCGGGCGGGTGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGCGGA
66 ACGAACGGGTGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
** *
14485832 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* * * * * *
14485897 GCTTGTAAATTTAAACAATGGTCCCTTACGACTTCACGCGAAGTTTCATGGCAAGACGACTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* * *
14485962 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGA
261 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGA
* * * *
14486027 GTTTTGGCCCCAAACTCGCTAGATGTGATCCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
14486092 CTAAAAACTCGAAGAGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
14486157 TAATGGCTACTGGCAGTAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
14486222 GTTTGATGAGGGATAGGTGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCATATCATGTGCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * *
14486287 CACCCCCCCGGCCGCCCTATCGTCGAAACCCCAATGCCGGCAGTCAGGTTCTCCGATGATGCTCC
585 CACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCC
** * * *
14486352 GGTGATGGTGCCCCGGGGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCTAGTATGTGCTG-C
650 GGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTC
* * *
14486416 TGGAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGA
715 -GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
14486481 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCTCTCAGCCGGCCTGAGGGGTGGG
779 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGG
** * *
14486546 ATGCGTAAGTCGAGGATCGATCGGGTGACCTCTGTGTGCTGCCGATCCTGCTATCG
844 ATGCGTAAGTCGAGGATCGATCGGGTCCCCTCTGCGTGCTGCCGATCCTGCTACCG
* * * * *
14486602 CAACCCTTGGTCTGATCTGATCTTAGACTAGGAATGAACTCCATCTACCTAAGCCAACCGACGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
14486667 ACGAACGGGTGGACGGGCAGGCGGGCATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAACGGGTGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
14486732 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* *
14486797 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGTCTCATT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* * ** * *
14486862 TTTTATTTTTCACAATTTTTGAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTTAGAAGGA
261 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGAAGGA
* *
14486927 GTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* * *
14486992 CTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCTCATTTCAGACTCTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
14487057 TAATGGCTACTGGTAGCATACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
14487122 GTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACATCATGTGCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
14487187 CACTCCCCCCTGGCCCCCCCAATCGTCGGAACCCTAATACCGTC-GATCAGGTTCT-C--CGA--
585 CAC-CCCCCC-GG-CCCCCCGATCGCCGGAACCCCAATGCCGTCAG-TCAGGTTCTCCGACGATG
* * * * * * *
14487246 ---C---GATGGTGCCCCGATGAAGAAAACTACGGCAGCAGTACATGCCCAAG-CTCAGCATTTG
646 CTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCT-AGCATGTG
* * * *
14487304 CTGTAGCAAGCCTCGATCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGC
710 CTGTCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGC
14487358 CTAAGCCAAC
Statistics
Matches: 4589, Mismatches: 596, Indels: 241
0.85 0.11 0.04
Matches are distributed among these distances:
891 216 0.05
892 281 0.06
893 13 0.00
894 156 0.03
895 222 0.05
896 101 0.02
897 519 0.11
898 244 0.05
899 194 0.04
900 548 0.12
901 240 0.05
902 409 0.09
903 113 0.02
905 1 0.00
907 1 0.00
910 1 0.00
911 57 0.01
912 21 0.00
914 2 0.00
918 2 0.00
919 33 0.01
920 407 0.09
921 1 0.00
922 2 0.00
923 5 0.00
925 4 0.00
926 3 0.00
927 1 0.00
928 1 0.00
929 6 0.00
930 3 0.00
931 8 0.00
933 29 0.01
934 12 0.00
935 247 0.05
936 188 0.04
937 2 0.00
938 1 0.00
940 1 0.00
941 1 0.00
942 2 0.00
947 1 0.00
948 7 0.00
949 201 0.04
950 82 0.02
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (899 bp):
CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAACGGGTGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCG
GTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCG
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
GCGTAAGTCGAGGATCGATCGGGTCCCCTCTGCGTGCTGCCGATCCTGCTACCG
Found at i:14487917 original size:26 final size:26
Alignment explanation
Indices: 14487881--14487931 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14487871 CGCACATCAT
* *
14487881 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
14487907 CTTAAACTGGGAATAAACTCCGTAT
1 CTTAAACTGGGAATAAACTCCGTAT
14487932 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:14489393 original size:26 final size:26
Alignment explanation
Indices: 14489364--14489416 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14489354 CTGATCCGAT
14489364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14489390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14489416 C
1 C
14489417 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14490255 original size:26 final size:26
Alignment explanation
Indices: 14490226--14490275 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14490216 CCAATCCGAT
14490226 CTTAGACTGGAAATGAACTCCGTACG
1 CTTAGACTGGAAATGAACTCCGTACG
*
14490252 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
14490276 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTACG
Found at i:14491158 original size:26 final size:26
Alignment explanation
Indices: 14491127--14491179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14491117 CTGGCCCGAT
14491127 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14491153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14491179 C
1 C
14491180 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14492751 original size:722 final size:714
Alignment explanation
Indices: 14491310--14492774 Score: 2085
Period size: 722 Copynumber: 2.0 Consensus size: 714
14491300 GTCTGGTTCA
*
14491310 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCG
* * * * * * *
14491375 GGCTCTACGTCGGCCCGAAAGACAGGATGTGCAAGCCATGGATTGATATGGTGGTAGGTGGGTTT
66 GGCACTACGTCGGCCAGAAAGACAGGAAGCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTT
*
14491440 AGGCACATCTTCATATTTCTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
14491505 CGTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
*** *
14491570 ACTTTTTACGGTTCGGGATTTTTAAAACTTTTTTTGAAAGAAGTTTTGGCATCAAACTTGGTAGA
261 ACTTTTTACGGTTCGGGATTTTTAAAAAAATTTTTGAAAGAAGTTTTGGCACCAAACTTGGTAGA
14491635 CGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCCAAAAACTCGAAATGTACAAGA
326 CGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCCAAAAACTCGAAATGTACAAGA
* * *
14491700 TTTTCTTACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCT
391 TTTTCTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAAACCT
14491765 ATAAAATCTAAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCA
456 ATAAAATCTAAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCA
* *
14491830 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCGCCAGGCCCCCCCGATC
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGGCCCCCCCGATC
* **
14491895 GTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAG
586 GTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
** *
14491960 AAAAATACAGCACCAGCAAATGCTCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCCG
651 AAAAATACAGCACCAGCAAATGCTCAAGCCCAGCATGTGCTGCCACAACCCTCGATCCGATCCG
* *
14492024 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA-CTGACGAAATGAGCGGGCGGGCTAGC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC-GACGAAACGAGCGGGC-GG---GC
* * * * *
14492088 GGGCGGGCGGGGACTACGTTGGCCAGAGAGGCGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTA
61 GGGCGGGC----ACTACGTCGGCCAGAAAGACAGGAAGCGCAAGCCATGGATCGATAGGGTGGTA
*
14492153 GGTGAGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
122 GGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
** * *
14492218 ACAATGGTCCCTTCGGCCTTCACGTGAAGTTTCATGGAAAGATGATTCATTTTCTATTTTTCACG
187 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCATTTTCTATTTTTCACG
* * ** *
14492283 ATTTTTGAAACTTTTTACGGTTCGGGA-TTTTAGAAAAAATTTTTGGATGGTGTTTTGGCCCCAA
252 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTA-AAAAAATTTTTGAAAGAAGTTTTGGCACCAA
* **
14492347 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAA
316 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCCAAAAACTCGAA
* * * * * *
14492412 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACATTTTAACGGCTACTGG
381 ATGTACAAGATTTTCTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAACGGCTACTGG
* * * * *
14492477 CAGCAAACCTGTAAAATCTCAAATGCTCTTTGAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGTG
446 CAGCAAACCTATAAAATCTAAAATGCTCTTT-AAGGGGGTGTCAGTTCTCGAGGTTTGATAAGGG
* *
14492541 ATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
510 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGG
* * * * *
14492606 CCCCCCCCGATCGTTGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGT
575 -CCCCCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
* * * * * *
14492671 GCCCCGACGAAGAAAAATGC-GACACCGGCACATGC-CCAGCCCAGCTTGTGCTGCCACAAGCCT
639 GCCCCGACGAAGAAAAATACAG-CACCAGCAAATGCTCAAGCCCAGCATGTGCTGCCACAACCCT
** * *
14492734 CGATTTGGTCTG
703 CGATCCGATCCG
14492746 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
14492775 TTAGACTAGG
Statistics
Matches: 660, Mismatches: 78, Indels: 18
0.87 0.10 0.02
Matches are distributed among these distances:
713 1 0.00
714 51 0.08
715 2 0.00
718 10 0.02
721 5 0.01
722 503 0.76
723 88 0.13
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (714 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCG
GGCACTACGTCGGCCAGAAAGACAGGAAGCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCGGGATTTTTAAAAAAATTTTTGAAAGAAGTTTTGGCACCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCCAAAAACTCGAAATGTACAAGA
TTTTCTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAAACCT
ATAAAATCTAAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGGCCCCCCCGATC
GTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
AAAAATACAGCACCAGCAAATGCTCAAGCCCAGCATGTGCTGCCACAACCCTCGATCCGATCCG
Found at i:14492786 original size:26 final size:26
Alignment explanation
Indices: 14492748--14492800 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14492738 TTGGTCTGAT
*
14492748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14492774 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14492800 C
1 C
14492801 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14493666 original size:26 final size:26
Alignment explanation
Indices: 14493637--14493687 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14493627 CCGGTTTGAT
*
14493637 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
14493663 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
14493688 CCCTAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:14495447 original size:26 final size:26
Alignment explanation
Indices: 14495409--14495460 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14495399 CCGGTCTGAT
* *
14495409 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14495435 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14495461 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14496341 original size:25 final size:26
Alignment explanation
Indices: 14496313--14496364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14496303 CCGATCTGAT
14496313 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
14496338 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
14496364 C
1 C
14496365 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:14496604 original size:902 final size:899
Alignment explanation
Indices: 14492004--14497229 Score: 6646
Period size: 902 Copynumber: 5.8 Consensus size: 899
14491994 ATGTGCTGCT
* * * * *
14492004 GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGA
1 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
14492069 AATGAGCGGGCGGGCTAGCGGGCGGGCGGGGACTACGTTGGCCAGAGAGGCGGGAAGCGCAAGCC
66 AACGAGCGGGC-GG---GCGGGCGGGCGGGCACTACG-TGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
14492134 GTGGATCGATAGGGTGGTAGGTGAGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
126 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
** * * *
14492199 TTATGGCTTGTAAATTCATACAATGGTCCCTTCGGCCTTCACGTGAAGTTTCATGGAAAGATGAT
191 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** **
14492264 TCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTAGAAAAAATTTTTGG
256 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGG
* *
14492329 ATGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
321 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
14492394 TTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGA
386 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14492459 CATTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAAGGGGTGTGAGTTC
451 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTC
* * *
14492524 TCGAGGTTTGATGAGTGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATCAT
515 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
14492589 GTGCGCACACCCCCCGGCCCCCCCCGATCGTTGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGC
580 GTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * *
14492654 GATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCGGCACATGCCCAGCCCAGCTTG
645 GATGCTCCGGCGATGGTG-CCCGACGAAGAAAAATGCGACACCAGCACATGCCGAGCCCAGCATG
* * ** *
14492719 TGCTGCCACAAGCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
709 TGCTGCCGCAACCCTCG-TCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAG
* * *
14492784 GAATGAACTCCGTATGCCTAAGTTAACCCACGAAAGGAGCGTACGGGCGCTCAACCGGCCAGAGG
773 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGG
* * * * * * ** *
14492849 GGCGAGATGCGCAAGCCGGGGATTGGTCGGGTCCCCATTTACGTGCTATCGATCCTGCTACT
838 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACA
* * *
14492911 GCAACCCTCGGTTTGGTCTGATCGTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * * * * * * * **
14492976 AACAAAAGGGCGGGCAGG-TGGCAGGCACTACGTCGGCCAAAAAGATGAGATGCGCAAGCTGTGG
66 AACGAGCGGGCGGGCGGGCGGGCGGGCACTACGT-GGCCAGAGAGACGGGATGCGCAAGCCATGG
* *
14493040 ATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * * **
14493105 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGATTTTCATGGCAAGATGACTTGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* *
14493170 TTTCTATTTTTCATGATTTTTGAAACTTTTTCCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
260 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
* * *
14493235 ATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
325 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
14493300 ACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
14493365 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TTCG
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTT-G
* * *
14493429 ACGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
14493494 CGCACACCCCCCCGGCCTCCCCGTTCGTCGGAACCACAATGCCGCCAGTCAGGTTCTCTGGTGAT
583 CGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * *
14493559 GCT-C--C------G---G-CGAAGAAAAATACGACATCAGCACATGCTCGAGCCTAGCATGTGC
648 GCTCCGGCGATGGTGCCCGACGAAGAAAAATGCGACACCAGCACATGC-CGAGCCCAGCATGTGC
** * * * *
14493611 TGTTGTAACCCTTCGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTAGGAA
712 TGCCGCAACCC-TCGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAA
* * * * * *
14493676 TGAACTCCGTATCCCTAAATCAGCCCACGAAACGAGCGTACGAGCGCTCTGTCGGCCAGAGGGGC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
14493741 GGGATGCGCAAGCCGGGGATCGCTTGGGTCTCCCTCTGCGTGCTGTCGATCCTGTTGCCA
841 GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-ACA
* * * *
14493801 -CAACCCTCGCTCTAGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCAAACCGACGA
1 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
14493865 AACGAGCGGGCGGACGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
66 AACGAGCGGGCGGGCGGGCGGGCGGGCACTACGT-GGCCAGAGAGACGGGATGCGCAAGCCATGG
* *
14493930 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATGCGATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * * * *
14493995 GGCTTGTAATTTCATACAATAGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * ** *
14494060 TTTCTATTTTTCATGATTTTTCAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAGAAGA
260 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
* * * *
14494125 AGTTTTGGCCCCAAACTAGTTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTTA
325 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
14494190 GCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAATGTTCCCA-TTCAAGACAC
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACAC
* *
14494254 TCTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTTG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTG
* * ** ** * *
14494319 AGGTTTGATGACGGATAAGGGGCCAATATAAGGGCCAAGTAATAGCACCCATAACACATAATGCG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
14494384 CGCAGACCCCCCCCG-CCCCCCCGATCG-CAGTAGCCCCAATGCCGTCGGTCAGGTTCTCCGGCG
583 CGCACA-CCCCCCCGACCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* * ** * *
14494447 TTGCTCTGGCGATGGTGCGCCGACGAAGAAAAATATGGCACCAGCACATGCCCGTGCCCAGCATG
646 ATGCTCCGGCGATGGTGC-CCGACGAAGAAAAATGCGACACCAGCACATG-CCGAGCCCAGCATG
*
14494512 TGCTGCCGCAA----C--CC--TC-GA---T-C-C--------AA-TCCG-AT-CTTAGACTGGG
709 TGCTGCCGCAACCCTCGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGG
* * * *
14494552 AATGAACTTCGTATGCCTAAGTCAAACCCTA--AAACGAGCGTGCAGGCGCTCAGCCGGCCAGAC
774 AATGAACTCCGTATGCCTAAGTC-AACCC-ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAG
* * * * * *
14494615 GGGCGGGATTCACAAGCCGAGGATCGATCGGGTCCCCCTCAT-TGTGCTGCCGATCTTGCTACC
837 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC-TGCGTGCTGCCGATCCTGCTACA
** * * * *
14494678 GCAACCCTCGGTCTGGTCTGATCTTAGACCAGGAATGAATTTCATATGCCTAAGCCAACTGACGA
1 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
14494743 AACGAGCGGGCGGACAGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGGCATGG
66 AACGAGCGGGCGGGCGGGCGGGCGGGCACTACG-TGGCCAGAGAGACGGGATGCGCAAGCCATGG
*
14494808 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
14494873 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA--C--
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * *
14494934 --TC-ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTTGAAATG
260 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
*
14494996 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCA
325 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
14495061 GCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATCTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
14495126 TTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAG
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAG
* * *
14495191 GTTTGATGTGAGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * ** * *
14495256 CACA-CCCCCC-AGCCCCCCGATCGTTGGAACCCCATTGCCGCCAATCATGTTCTCCGACGATGC
585 CACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * * * *
14495319 TTCAGCGATGGTGCCCCAATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
650 TCCGGCGATGGTG-CCCGACGAAGAAAAATGCGACACCAGCACATG-CCGAGCCCAGCATGTGCT
* * * * *
14495384 ACCGTAACCCTTGGCCCGGTCTGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTAGGAAT
713 GCCGCAACCC-TCGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAAT
* * * *
14495449 GAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTACGGGCGCCCAGCCAGCCAGAGGGGCT
777 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * *
14495514 GGATGCGTAAGTCGGGGATAG-GCTGGGTCCCCCTCTGTGTGTTGCCGATCCTGCTACC
842 GGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACA
* * * *
14495572 GCAACCCTCAGTCCGGTCTGATCTTAGA-TAGGGAATGAACTCTGTATGCCTAAGCCAACCGATG
1 GCAACCCTCGGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
14495636 AAACAAGCGAGTGGGCGGGCAGGCGGGCACTACGCTGGCTAGAGGGACGGGAT-CTGCAAGCCAT
65 AAACGAGCGGGCGGGCGGGCGGGCGGGCACTACG-TGGCCAGAGAGACGGGATGC-GCAAGCCAT
* * *
14495700 GGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTCCATGCTAATGCCATTTTT
128 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
14495765 ATGGTTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTC
193 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
14495830 ATTTTCTATTATTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAACATTTTTTTTGGA
258 ATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA-AATTTTTTTGGA
* * *
14495895 GGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGAT
322 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
14495960 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCGAGA
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGA
14496024 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTC
451 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTC
* * *
14496089 TTGAGGTTTGATGAGTGATAGGGGACCAATATAAGGGCCAAGTACCAGGACCCATCGCACATCAT
515 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * **
14496154 GTGCGCACACCCCCCCGAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTACGAT
580 GTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
*
14496219 GATGCTCCGGCGATGGTGCCTCGACGAAG-AAAATGCAACACCAGCACATGCCGTAGCCCAGCAT
645 GATGCTCCGGCGATGGTGCC-CGACGAAGAAAAATGCGACACCAGCACATGCCG-AGCCCAGCAT
* * *
14496283 GTGCTACCGCAACCCTCAGTCCGATCTGATCTTACACT-GGAATGAACTCCGTATGCTTAGACTG
708 GTGCTGCCGCAACCCTC-GTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTA
* *
14496347 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCAGCCAGAG
772 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAG
* ** * * * **
14496412 GGGTGGGATGCGCAAATCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTACTGTA
837 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACA
* * *
14496475 GCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATG-AGTCCGTATGCCTAGGCCAACCGACGA
1 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
14496539 AATGAGTGGGTGGGCGGACGGGCGGGCACTACGCTTGCCAGTGAGACGGGATGCGCAAGCCATGG
66 AACGAGCGGGCGGGCGGGCGGGCGGGCACTACG-TGGCCAGAGAGACGGGATGCGCAAGCCATGG
* * *
14496604 ATCTG-TAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTA
130 ATC-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* * * *
14496668 TGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACATGAAGTTCCATGGCAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* * *
14496733 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTACAATTTTTTTGGAAA
259 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAG
* * *
14496798 GATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
14496863 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
14496928 TTTAATGGCTACTGCCAGCAAACCTATAAAATCTGAAAATGCTCCTTAAGAGGGTGTGAGTTCTC
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAG-GGGTGTGAGTTCTT
*
14496993 GAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCAG-ACATCATG
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATG
* * * * * *
14497056 TGTGCACA-CCCCCCGACCCCCCCGATCGCCTGAACCCCAATGCCACCGGTCAGATTCTCCAGCG
581 TGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
** * * *
14497120 A---T---G-G-T-GCCCCCG-CAAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGT
646 ATGCTCCGGCGATGGTGCCCGACGAAGAAAAATGCGACACCAGCACATGC-CGAGCCCAGCATGT
* * ** * *
14497175 GCTGCCACAACCCTCCATCCAATCTGATCTTAGACTGGGAATGAACTCTGTATGC
710 GCTGCCGCAACCCT-CGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGC
14497230 CTAAGCCAAC
Statistics
Matches: 3761, Mismatches: 464, Indels: 204
0.85 0.10 0.05
Matches are distributed among these distances:
868 106 0.03
869 1 0.00
870 76 0.02
871 213 0.06
872 4 0.00
875 2 0.00
876 1 0.00
877 3 0.00
878 336 0.09
879 7 0.00
880 5 0.00
881 3 0.00
883 1 0.00
888 25 0.01
889 247 0.07
890 555 0.15
891 36 0.01
892 6 0.00
893 13 0.00
894 334 0.09
895 1 0.00
896 1 0.00
897 3 0.00
899 3 0.00
900 50 0.01
901 257 0.07
902 971 0.26
903 258 0.07
904 113 0.03
905 64 0.02
906 2 0.00
907 64 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTGGCCAGAGAGACGGGATGCGCAAGCCATGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
CCGGCGATGGTGCCCGACGAAGAAAAATGCGACACCAGCACATGCCGAGCCCAGCATGTGCTGCC
GCAACCCTCGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACA
Found at i:14498101 original size:696 final size:699
Alignment explanation
Indices: 14496490--14500745 Score: 5769
Period size: 697 Copynumber: 6.0 Consensus size: 699
14496480 CCTCGGTTTG
* * * *
14496490 GTCTGATCTTAGACTGGGAATG-AGTCCGTATGCCTAGGCCAACCGACGAAATGAGTGGGTGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----AT----
** * *
14496554 GGACGGGCGGGCACTACGCTTGCCAGTGAGACGGGATGCGCAAGCCATGGATCTG-TAGGGTGGT
58 GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-GATAGGGTGGT
* * *
14496618 AGTTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
122 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
14496683 TGCAATGGTCCCTTAAGCCTTCACATGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCAT
187 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
14496748 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTACAATTTTTTTGGAAA-GATTTTTGGCCCCA
252 GATTTTTGAAACTTTTTGCGATTCGGGATTTTTTA-AAATTTTTTCGAAAGGAGTTTTGGCCCCA
*
14496812 AACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
316 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
14496877 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTG
381 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
14496942 CCAGCAAACCTATAAAATCTGAAAATGCTCCTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGG
446 GCAGCAAACCTATAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
14497007 GATA-GGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCAGACATCATGTGTGCACACCCCCCG
510 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC-TCATGTGCGCACACCCCCCG
* * * *
14497071 ACCCCCCCGATCGCCTGAACCCCAATGCCACCGGTCAGATTCTCC-AGCGATGGTGCCCCCG-CA
574 GCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACCGATGGTG-CCCCGACA
** *
14497134 AAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCCATCCA
638 AAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCA
* * * * **
14497196 ATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAACGGGTGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAATGGACGGGC
* *
14497261 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
14497326 TAGGCACATCTTTATATTTCTACATGCCAGTGCCATTTTTATGGCTTGTAAATTCCTACAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
14497391 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * **
14497456 AACTTTTTGCGATTCGAGATTTTTGAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACAAGGTAG
261 AACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
14497521 ATGTGATCCTTGTATTTTTGTTGGTATGCACAAAACAATTCAACTAAAAACGT-GAAGTGTACAA
326 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAA
* *
14497585 GATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
14497650 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGC
455 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14497714 CAATATAAGGGCCAAGTACCAGCACCCATCACACTCATGTGCGCACACCCCCTGGCCCCCCCGAT
520 CAATATAAGGGCCAAGTACCAGCACCCATCACACTCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * *
14497779 CGTCGGAACCCCAATGCCGCC-GTCAGGATCTCCGA-CTATGGTGCCCCGACAAAGAAAAATAGG
585 CGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACCGATGGTGCCCCGACAAAGAAAAATACG
* *
14497842 GCATCAGCACATGCTCGAGCCTAGCATGTGCTGCCACAACCCTCGATCCA
650 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCA
* *
14497892 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAATGGACAGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAATGGACGGGC
* * * * *
14497957 GGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGTCATGGATTGATAGGGTGATAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
14498022 TAGGCACATCTTCGTATTTCTACGTGCCAGTGCCATTTTTATGGCTTGTAAATTCCTATAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
14498087 CCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * * * *
14498152 AACTTTTTGTGATTCGAGATTTTTTAAATTTTTTTCGGAAGGATTTTTGGCCCCAAACTTAGTAG
261 AACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* ** *
14498217 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAAAGCGAAGCGTACAAG
326 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * * * *
14498282 ATTTTCTGACCATTTGAAAAAGGTGTTCCCATTTCACACACTTTAACGGCTACTGGCAGCAGACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
14498347 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTTGAGGTTTGATGAGAGATAGGGGGCC
456 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
14498412 AATATAAGGGCCAAGTACCAGCACCCATCACACTCATGTGCGCACACCCCCCGGCCCCCCCGAT-
521 AATATAAGGGCCAAGTACCAGCACCCATCACACTCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * * * *
14498476 GCCGGAACCTCAACGCCGCCGGTCAGGTTCTCC-AACGATGGTGCCTCGGCAAAGAAAAATGCGG
586 GCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACCGATGGTGCCCCGACAAAGAAAAATACGG
14498540 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTC-AGTCCA
651 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGA-TCCA
*
14498589 GTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCGAGCGG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAATG-GA-CGG
* * * *
14498652 GTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTTGG
64 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
14498717 TTTAGGGACATCTTCATATTTTTACGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
**
14498782 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAAATTTCATGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* *
14498847 GAAACTTTTTGC-ATTTCGGGATTTTTTAAAAATTTTTCGCGAA-GAGTTTTGGCCCCAAACTTG
259 GAAACTTTTTGCGA-TTCGGGATTTTTTAAAATTTTTTCG-AAAGGAGTTTTGGCCCCAAACTTG
** * *
14498910 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTA
322 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
14498975 CAAGATTTTGTGACCATTTGATAAATGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * *
14499040 AACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTGGATAAGGGATAGGG
452 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
14499105 GGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACTCATGTGCGCACACCCCCCGGCCTCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACTCATGTGCGCACACCCCCCGGCCCCCCC
*
14499170 GATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTTCGA-CGATGGTGCCCCGACAAAGAAAAAT
582 GATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACCGATGGTGCCCCGACAAAGAAAAAT
* * *
14499234 ACGGCACCAGCACATGCTCGAGCCTAGCATGTGCT--CAGCAACCCTCGGTCCG
647 ACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCA-CAACCCTCGATCCA
* * *
14499286 GTCTGATCTTACACTGGGAATGAACTCC-TATGCCTAAGCCAACTGACAAAACG-A--G-CGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAATGGACGGGC
* * * *
14499346 GGGCATTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAAGGTGAGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
14499411 TAGGCACATCTTCATATTTCTACATGCCAATGCCTTTTTTATGGTTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
14499476 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * *
14499541 AACTTTTTGCGGTTTGGGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTCGTA
261 AACTTTTTGCGATTCGGGATTTTTT-AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
14499605 GAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCCGCTAAAAACTCGAAGTGTACAA
325 GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14499670 GATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14499735 CTGTAAAATCTCAAATGCTCTTTATGGGGG-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
14499799 CAATATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTACGCCCACCCCCCTGGCCCCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCACAC-TCATGTGCGCACACCCCCC-GGCCCCCCCG
* * * **
14499864 ATCGTCGGAACCCCAATGCCATCAGTCAGGTTCTCCGGGGATGCTCCGGTGATGGTGCCCCGATG
583 ATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCC---GA----CC---GATGGTGCCCCGACA
* * ** *
14499929 AAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC-AGTCCG
638 AAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGA-TCCA
* * *
14499991 GTCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----AT--G-
* *
14500056 GATCGGGCGGGCACTACGCGGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTA
59 GA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** * * * *
14500121 CATGAGTTTAGGCACATCTTCATTTTTCTACGTGCAAATGCCATTTTTATGGCTTGTAAATTCAT
123 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
14500186 ACAATGGTCCCTTAAGCCTTCACGTTAAGTTTAATGGCAAGACGACTCGTTTTTTATTTTTCATG
188 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
** * * * * *
14500251 ATTTTCAAAAGTTTTTACGGTTCGGGATTTTTTAAAATATTTTGGAAAGGAGTTTTGGCCCCAAA
253 ATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
* * * * *
14500316 CTTGGTAGACGTGATCCCTGTATTTTTATTGGCATGCACAAAAAAAAATCAGCTAAAAACTCAAA
318 CTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAA
* * * * *
14500381 GTGTACAAAATCTTGTCACCTTTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
382 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
14500446 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGTTTGTTGAGGGA
447 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
14500511 TAGGGGGCTAAAATAAGGGCCAAGTTCCAGCACCCATCGCAAATCATGTGCGCACACCCCCTCGG
512 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC-ACTCATGTGCGCACACCCCC-C-G
* * * *
14500576 GCCCCCCCGATCGCTGGAACCCCAATGCCACCTGTCAGGTTCTCTAATGATGCTCCGGTGATGAT
574 GCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTC---CGA----CC---GATGGT
* * * * **
14500641 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATCTGCTACTGCAACCCTC
629 GCCCCGACAAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTC
**
14500706 GATCTG
694 GATCCA
*
14500712 GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14500746 TTAGACTGGG
Statistics
Matches: 3182, Mismatches: 308, Indels: 105
0.89 0.09 0.03
Matches are distributed among these distances:
691 67 0.02
692 389 0.12
693 50 0.02
694 1 0.00
695 6 0.00
696 593 0.19
697 752 0.24
698 183 0.06
699 358 0.11
700 1 0.00
701 1 0.00
704 54 0.02
705 37 0.01
706 44 0.01
707 29 0.01
716 1 0.00
717 9 0.00
718 258 0.08
719 116 0.04
720 76 0.02
721 156 0.05
722 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (699 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAATGGACGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCACACTCATGTGCGCACACCCCCCGGCCCCCCCGATC
GCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACCGATGGTGCCCCGACAAAGAAAAATACGG
CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCA
Found at i:14500748 original size:26 final size:26
Alignment explanation
Indices: 14500719--14500769 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14500709 CTGGTCCGAT
14500719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14500745 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14500770 TTCAGACACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14501070 original size:346 final size:348
Alignment explanation
Indices: 14500420--14501115 Score: 950
Period size: 346 Copynumber: 2.0 Consensus size: 348
14500410 AAGTGTCCCC
14500420 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTT
1 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTT
* * * * *
14500485 GTGAGTTCTTGAGGTTTGTTGAGGGATAGGGGGCTAAAATAAGGGCCAAGTTCCAGCACCCATCG
66 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAACTACCAGCACCCATCG
* * *
14500550 CAAATCATGTGCGCACACCCCCTCGGGCCCCCCCGATCGCTGGAACCCCAATGCCACCTGTCAGG
131 CAAATCATGTGCGCACACCCCCTCGGGCCCACCCGATCGCTAGAACCCCAATGCCACCGGTCAGG
* * ** *
14500615 TTCTCTAATGATGCTCCGGTGATGATGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
196 TTCTCCAAGGATGCTCCGACGATGATGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGA
* *** *
14500680 GCCCAGCATCTGCTACTGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
261 GCCCAGCATCTGCTACCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATATG
* *
14500745 CTTAGACTGGGAATGAACTCCGT
326 CTTAGACAGAGAATGAACTCCGT
* *
14500768 ATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-T
1 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTT
*
14500832 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCG
66 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAACTACCAGCACCCATCG
* ** * * ** *
14500897 TACGTCATGTGGGCACACCCCC-CTGGCCCACCCGATCG-TCAGAACCCCAATGCCGTCGGTCGG
131 CAAATCATGTGCGCACACCCCCTCGGGCCCACCCGATCGCT-AGAACCCCAATGCCACCGGTCAG
** * * *
14500960 GTTCTCCGGGGATGCTCCGACGATGGTGCCCCTG-CGAAGAAAAATGCGACACCAGCACATGCTC
195 GTTCTCCAAGGATGCTCCGACGATGATGCCCC-GACGAAGAAAAATACGACACCAGCACATGCCC
* * * * * * *
14501024 GAGCCTAGCATGTGCTGCCGTAACCCTCGGTCCAATCCGTTCTTAGACTGGGAATGAACTCCATG
259 GAGCCCAGCATCTGCTACCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATA
*
14501089 TGCTTAGACAGAGAATGAACTCTGT
324 TGCTTAGACAGAGAATGAACTCCGT
14501114 AT
1 AT
14501116 GCCTAAGTCA
Statistics
Matches: 302, Mismatches: 44, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
345 1 0.00
346 161 0.53
347 79 0.26
348 61 0.20
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (348 bp):
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAACTACCAGCACCCATCG
CAAATCATGTGCGCACACCCCCTCGGGCCCACCCGATCGCTAGAACCCCAATGCCACCGGTCAGG
TTCTCCAAGGATGCTCCGACGATGATGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGA
GCCCAGCATCTGCTACCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATATG
CTTAGACAGAGAATGAACTCCGT
Found at i:14502627 original size:878 final size:869
Alignment explanation
Indices: 14501091--14502866 Score: 2336
Period size: 878 Copynumber: 2.0 Consensus size: 869
14501081 ACTCCATGTG
* * * * * *
14501091 CTTAGACAGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
14501156 CGGCCAGAGGGGCAGGACGCACAAGGCGAGGATCGGCCGGGTCCCTCTCTACGTGCTGTCGATCC
66 CGGCCAAAGGGGCAGGACGCACAAGGCGAGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCC
* * *
14501221 TGCTACCGCAACCCTCAGTCTGATCTGATCTTAGACTAGGAATGAACACCGTATGCCTAAGCCAA
131 TGCCACCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACACCGTACGCCTAAGCCAA
* * * * * *
14501286 CCGACGAAACGAGCGGGCGGGCGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCTGT
196 CCGACGAAAAGAGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACAGGAAGCACAAGCCGT
* * * *
14501351 GGATCGATAGGGTGGAAAGTGGGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
261 GGATCGATACGGTGGAAAGTGGGTTTACGAACATCTTCATATTTCTGCATGCCAATACCATTTTT
* * *
14501416 ATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTAATGTTTCATGGAAAGGCGACTT
326 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAATGTTTCATGGAAAGACGACTC
* * * *
14501481 GTATTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATCTTTTGAAATTTTTTCGGAA
391 ATATTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATCTTTTGAAATTTTTTCGAAA
* * * * *
14501546 GGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACCAAAAAAAT
456 AGAGTTTTGACCCCAAACTTGGCAGACATGATCCTTGTATTTTTTTCGACATGCACCAAAAAAAT
* * *
14501611 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAATGTGTCCCCATTTGAGAC
521 GCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGAC
* *
14501676 ACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA--GGGTGTGAATTCT
* *
14501741 CGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATG
649 CAAGGTTTGA--TGGGATAGGGGGCCAATATAAGGGCC-AGTACCAGCACCCATCGCACATCATG
* * *
14501806 TGCGCACA-CCCCCCGGCCCCCCCGATCGTCAGAACCCTAATGCCGCCGTTCAGGTTCTCCGGCG
711 TGCGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTCTCCGGCG
* * * * ** * * *
14501870 ATGCTCTGGCGATGGTGCCCTGGC-AAAAAAGAATGTGGTACCAGCACATGCTCGAGCCCAGCAT
776 ATGCTCCGACGATGGTGCCCCGACGAAAAAA-AATACGGCACCAACACATGCCCGAGCCCAGCAT
* *
14501934 GTGCTACCGCAACCCTCGGTTCGGTCCGAA
840 GTGCTACCGCAACCATCGGTTCGATCCGAA
*
14501964 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAACCGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
14502029 CGGCCAAAGGGG-AGGGATGCGTAAGTC-AGGAATCGATCGGGTCCCCCTTTGCGTGCTACCGAT
66 CGGCCAAAGGGGCA-GGACGCACAAGGCGAGG-ATCGACCGGGTCCCCCTCTACGTGCTACCGAT
* * * * *
14502092 CCT-CCAGCCTCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGC
129 CCTGCCA-CCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACACCGTACGCCTAAGC
*
14502156 CAACCGACGAAATAAGCAGACGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACAGGAAGCA
193 CAACCGACG-AA-AAG-AG-CGGGCGGG-CGGCGGGCACTACGCCGGCCAGAGAGACAGGAAGCA
* * *
14502221 CAAGCCGTGGATCGATACGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATA
253 CAAGCCGTGGATCGATACGGTGGAAAGTGGGTTTACGAACATCTTCATATTTCTGCATGCCAATA
*
14502286 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA-GTTTCATGGCA
318 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT-AATGTTTCATGGAA
* * ** *
14502350 AGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTTCGGAAT-TTTTTAAACT
382 AGACGACTCATATTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATCTTTTGAAA-T
* * *
14502414 TTTTTTGAAAAGAGTTTTGGCCCGAAACTTGGCAGACATGGATCCTTGTATTTTTGTTCGACATG
446 TTTTTCGAAAAGAGTTTTGACCCCAAACTTGGCAGACAT-GATCCTTGTATTTTT-TTCGACAT-
*
14502479 GCA-CAAAAAAATGCAGCT-AAAACTCGAAGTGTACAAGA-TTTGTGGACCATTTGAAAAAAGTG
508 GCACCAAAAAAATGCAGCTAAAAACTCGAAGTGTACAAGATTTTGT-GACCATTGGAAAAAAGTG
* * * *
14502541 TCCCACATTTCAGACACTTTAATGGCTACTGGCAGC-AAGCTGTAAAATCTTCAAAAATTCTCTT
572 TCCC-CATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATC-TC--AAATGCTCTT
*
14502605 TAA-GG-GTGAATTCTCAAGGTTTGATGGGATAGGGGGCCAATATAAGGGCCAGTACCAGCACTC
633 TAAGGGTGTGAATTCTCAAGGTTTGATGGGATAGGGGGCCAATATAAGGGCCAGTACCAGCACCC
* * *
14502668 ATCGCACATCATGTGCGCACACCCCCCCGGGCCCCCCGATCGTCGGAACCCCAATACTGCCGGTC
698 ATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATACCGCCGGTC
*
14502733 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCC
763 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATACGGCACCAACACATGCC
* * * * * **
14502798 CGAGCCTAGCATGTGCTGCCGTAACCATCTGTTCGATCTGGT
828 CGAGCCCAGCATGTGCTACCGCAACCATCGGTTCGATCCGAA
*
14502840 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
14502867 TTAGACTAGG
Statistics
Matches: 782, Mismatches: 101, Indels: 37
0.85 0.11 0.04
Matches are distributed among these distances:
872 6 0.01
873 165 0.21
874 2 0.00
875 34 0.04
876 173 0.22
877 20 0.03
878 247 0.32
879 70 0.09
880 51 0.07
881 3 0.00
882 11 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (869 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAAAGGGGCAGGACGCACAAGGCGAGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCC
TGCCACCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACACCGTACGCCTAAGCCAA
CCGACGAAAAGAGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACAGGAAGCACAAGCCGT
GGATCGATACGGTGGAAAGTGGGTTTACGAACATCTTCATATTTCTGCATGCCAATACCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAATGTTTCATGGAAAGACGACTC
ATATTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATCTTTTGAAATTTTTTCGAAA
AGAGTTTTGACCCCAAACTTGGCAGACATGATCCTTGTATTTTTTTCGACATGCACCAAAAAAAT
GCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGTGTGAATTCTCA
AGGTTTGATGGGATAGGGGGCCAATATAAGGGCCAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCT
CCGACGATGGTGCCCCGACGAAAAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTA
CCGCAACCATCGGTTCGATCCGAA
Found at i:14502878 original size:26 final size:26
Alignment explanation
Indices: 14502840--14502892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14502830 TCGATCTGGT
* *
14502840 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
14502866 CTTAGACTAGGAATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
14502892 C
1 C
14502893 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:14503214 original size:25 final size:26
Alignment explanation
Indices: 14503186--14503237 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14503176 TCGATCCGAT
14503186 CTTAGACT-GGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
14503211 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14503237 C
1 C
14503238 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.32
26 16 0.64
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14505506 original size:26 final size:26
Alignment explanation
Indices: 14505477--14505529 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14505467 CCCATCCGAT
14505477 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14505503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14505529 C
1 C
14505530 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14506403 original size:26 final size:26
Alignment explanation
Indices: 14506374--14506424 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14506364 CAGTCCGATC
14506374 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
14506400 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14506425 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:14506967 original size:896 final size:891
Alignment explanation
Indices: 14505159--14510039 Score: 6248
Period size: 896 Copynumber: 5.5 Consensus size: 891
14505149 TGATCCTTGT
*
14505159 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
14505224 TG-------TCAAA---TCTTAAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAAGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14505279 AATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCCGGCGCCCCCGA
131 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGA
** ** * ** **
14505344 TCACTGGAACCCCAATGGAACCGATCAGGTTCTCCGGCGATGATCCGACGATAGTGCCCCGGTGA
195 TCACCAGAACCCCAATGCCACCGGTCAGGTTCTCC--CGATG-TCCGGTGATAGTGCCCCGACGA
*
14505409 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCCA-TC
257 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGT-CCAGTC
14505473 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
321 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * ** * * *
14505538 ACTCACGAAACCAGCGTACGGGCGCTCAACCGGCCAAAGGGGTGGGATGCGCAAGCCGTGGATCG
386 ACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
14505603 ATCGGGTCCCCCTCTGTGTGCTGTCGATCTTGCTGCCACAACCCTGAGTCCT-GTCTGATCTTAG
451 ATCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGTCACAACCCTTAGT-CTGGTCTGATCTTAG
* * * * * *
14505667 ATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCTATGCC
515 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACGTC
* * * *
14505732 GTCTAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTT
580 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTT
* *
14505797 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTT
645 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
14505862 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTAC-G
710 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAG
* * * *
14505925 ATTCGAGATTTTTTAAATTTTTTTTGGAAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCT
775 -TTCG-GATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
* *
14505990 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAG
837 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14506045 ATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
14506110 TGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14506175 AATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGCACAACCCCCCCGG-CCCCCCG
131 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCCG
*
14506239 ATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGTGATAGTGCCCCGACG
194 ATCACCAGAACCCCAATGCCACCGGTCAGGTTCTCC--CGATG-TCCGGTGATAGTGCCCCGACG
* *
14506304 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGCTCCAGTC
256 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCAGTC
*
14506369 CGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
321 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
14506434 ACCCATGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGACGCGTAAGCCGGGGATCG
386 ACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * ** *
14506499 ATCGGGTCCCCCTCTGTGTGCTGCCCATCCTACGGTCGTAACCCTTAGTCCGGTCTGATCTTAGA
451 ATCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGTCACAACCCTTAGTCTGGTCTGATCTTAGA
* * *
14506564 CTGGGAAGGAACTCCATATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGAGCACTACGTCG
516 CTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACGTCG
* *
14506629 GCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAACGTGGTAGGTGGGTTTAGGCACATCTTC
581 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
14506694 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAACCCTTC
646 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
14506759 ACATGAGGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGT
711 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGT
* * * * *
14506824 TCAGGATTTTTAAAAATTTTTTCGGATGGTGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGT
776 TC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
14506889 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
840 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
14506941 ATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
14507006 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14507071 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGAT
131 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
** * * ** * * *
14507136 CGTCAGAATCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCAAA
196 CACCAGAACCCCAATGCCACCGGTCAGGTTCTCC--CGATG-TCCGGTGATAGTGCCCCGACGAA
* * * *
14507201 GAAAAATACGGCACCAGCATATGCCCGGGCCCAGTATGTGCTGCTGCAA-CC-C--T-C-G---G
258 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCAGTCCG
* ** *
14507257 ----T---CT--G---G---TCC-AAT-CTTAGACTGGGAATGAACTTTGTATGCCTAAGTTAAC
323 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
14507305 CTACGAAACGAGCGTGCGGGCACTCAGACAGCCAGAGGGGCGGGACGTGCAAGCCGGGGATCGGT
388 CCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * * * * * *
14507370 TGGGTCCCCCTCTACGTGCTTCCCATCCTACTGTCACAACCCTTAGTCTGATCCGATCTTAGACT
453 CGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGTCACAACCCTTAGTCTGGTCTGATCTTAGACT
*
14507435 AGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACG-CTGG
518 GGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACGTC-GG
* *
14507499 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGATAGGTGCGTTTAGGCACATCTTCA
582 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
14507564 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCA
647 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
14507629 CGTGAGGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT
712 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAG-T
* * *
14507694 TGGGATTTTTTTAAAA-TTTTTCGAAAGGAGTTTTGTCCCCAAACTTGGTAGACATGATCCTTGT
776 TCGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* * *
14507758 ATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGCACAAG
840 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
14507810 ATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGATACTTTACTAGCTACTGGCAGCAAACT
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
14507874 TGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
14507939 AATATAAGGGCCAAGTACCTGTACCCATCGCACATCATATGTGCACACCCCCCGGCCCCCCCGAT
131 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * *** * *
14508004 CATCAGAACCCTAATGCCGTTGGTCAGGTTCTCCAGTGATGGTCCGGTGATAGTGCCTCGACGAA
196 CACCAGAACCCCAATGCCACCGGTCAGGTTCTCC--CGAT-GTCCGGTGATAGTGCCCCGACGAA
* * *
14508069 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCA-CAA----------A---C
258 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCAGCAACCCTCGGTCCAGTCC
* *
14508120 --T-TTGGTCT--G-AT---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
322 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
14508172 CCCACGAAACGAGA-GTACGGGCGCACAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG
387 CCCACGAAACGA-ACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * ** *
14508236 GTCGTGTCCCCCTCTGCATGCTGCCGATCTTGCTGTCACAA-TTTTCAGTCTGATCTGATCTTAG
451 ATCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGTCACAACCCTT-AGTCTGGTCTGATCTTAG
* * *
14508300 ACTGGGAATTAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCAGGCGGGCGGGCGGGCGGCC
515 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA--CG-A-GCGGGCGGGC--G-GG-C
* * * * * *
14508365 ACTACGTCGTCCAGAGATATGGGATGCGTAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGG
572 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGG
* * * *
14508430 CACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGCTCCCT
637 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
14508495 TAAGCCTTCACGTGACGTTTCATGGCAAAACGACTCGTTTTCTATTTTTTACGATTTTTGAAACT
702 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * *
14508560 TTTTACAGTTCGAGATTTTTTAAAATTTTTTTGGAACGCGTTTTGGCCCCAAACTTGGTAGACAT
767 TTTTACAGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
*
14508625 GATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
831 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
14508686 ATTTTGTGACCATTAGAAAAAAATGTCCCCATTACAGAAACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
14508751 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTTC-AGGTTTGATGAGGGATAGGGGAC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGC
* * *
14508815 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCGGCCCCTCAGA
130 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * * * *
14508880 TCATCGGAACCCTAATGCCGA-CGGTAAGGTTGT-CC-A-G--C---GATGGTGCCCCGACGAGG
195 TCACCAGAACCCCAATGCC-ACCGGTCAGGTTCTCCCGATGTCCGGTGATAGTGCCCCGACGAAG
* ** * *
14508936 AAAAATACGACACC-GACACATGCCCGATTCTAGCATGTGCTGCCGCAACCCTCGGTCC-GATCC
259 AAAAATACGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCAG-TCC
* * * *
14508999 GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATACGCCTAAGTCAA
322 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * * * *
14509064 CCCACAAAACAAACGTGCCGGTGCTCAGCCAGCCAGAGGGGCGGGATGTGTAAGCTGGGGTTC-A
387 CCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * *
14509128 GTTGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGA
452 -TCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGTCACAACCCTTAGTCTGGTCTGATCTTAGA
* * * * *
14509193 CTGGGAATGAACTCTGTATGCCTAAACCAACCGATGAAACGAGCGTACGGGTGGGCAGGCGGGCA
516 CTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA--G--C----GGGCGGGCGGGCA
* * * * * *
14509258 CTACGTCGACCAGAGAGACGAGATGTGCAAGCCGAGGATCGATATGGTGGAAGGTGGGTTTAGGC
573 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGC
*
14509323 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTT
638 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
14509388 AAGCCTTCACATGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
703 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * * * * *
14509452 TTTACGGTTTGGTATTTCTTAAAATTTTATCGAAAGGAGTTTTGACCCCAAACTTGGTAAACTTG
768 TTTACAGTTCGG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
14509517 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
832 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * * **
14509577 ATTTTGTGACCATTCGAAAAAAGTGCCCCCATTTCAAACACTTTAGTAACTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14509642 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14509706 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCCGAT
131 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * *
14509771 CACCGGAACCCCAATGCCGCCGGTCAGGTTCT-CCG--G--CGGTG---GTGCCCCGGCGAAGAA
196 CACCAGAACCCCAATGCCACCGGTCAGGTTCTCCCGATGTCCGGTGATAGTGCCCCGACGAAGAA
* * * * ** * *
14509828 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCGGCCGTAACCCTCGGTCTGGTCTGATA
261 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCAGTCCGATC
14509893 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
326 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
14509958 CGGAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCTG
391 CGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-G
14510022 GGTCCCCCTCTGCGTGCT
455 GGTCCCCCTCTGCGTGCT
14510040 ACTGATCCTA
Statistics
Matches: 3513, Mismatches: 383, Indels: 194
0.86 0.09 0.05
Matches are distributed among these distances:
865 3 0.00
866 51 0.01
867 2 0.00
868 428 0.12
869 508 0.14
870 15 0.00
871 5 0.00
872 10 0.00
873 1 0.00
874 2 0.00
875 15 0.00
876 302 0.09
877 178 0.05
878 2 0.00
879 3 0.00
881 1 0.00
882 6 0.00
884 1 0.00
885 2 0.00
886 66 0.02
888 2 0.00
889 2 0.00
890 294 0.08
891 272 0.08
892 301 0.09
893 9 0.00
894 11 0.00
895 114 0.03
896 868 0.25
897 37 0.01
898 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (891 bp):
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CACCAGAACCCCAATGCCACCGGTCAGGTTCTCCCGATGTCCGGTGATAGTGCCCCGACGAAGAA
AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCAGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
GTCCCCCTCTGCGTGCTGCCGATCTTGCTGTCACAACCCTTAGTCTGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGA
TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
Found at i:14509929 original size:26 final size:26
Alignment explanation
Indices: 14509893--14509944 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14509883 TGGTCTGATA
14509893 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14509919 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14509945 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14510694 original size:26 final size:26
Alignment explanation
Indices: 14510665--14510715 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14510655 AGTCCGATCG
14510665 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
14510691 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14510716 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14512627 original size:719 final size:708
Alignment explanation
Indices: 14511019--14512954 Score: 2807
Period size: 719 Copynumber: 2.7 Consensus size: 708
14511009 TGCTATTTTT
* * *
14511019 ATGGCAAGATGACTCGTTTTCTAGTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT
1 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
14511084 AAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
66 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
14511148 AGGCACAAAAAAA-TCA-CTTAAAAACTTGAAGTGTACAAG--TTTGTGTCCATTTGAAAAAAGT
131 ATGCACAAAAAAATTCAGC-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
14511209 GTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCCCAAATGCTCTTTAA
195 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
* * *
14511274 AGGAGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCAC
260 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCAC
14511339 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGG
325 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGG
* * * **
14511404 CCAGGTTCTCCGACGATGGTGCCCCAGCGAAGAAAAATG-TGGCACCAGCACATGCCTGAGCCCA
390 TCAGGTTCTCCGACGATGGTGCCTCGGCGAAGAAAAATGCT-GCACCAGCACATGCCCAAGCCCA
* * *
14511468 GCATGTGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
454 GCATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
14511533 GCCAACCGAAGAAATGAGAGGGCGGACGGGCGGGCGGGCACTACTCCTGCCAGAGAGACGGGTTG
519 GCCAACAGAAGAAATGAGAGGGCGGACGGGCGGGCGGGCACTACTCCTGCCAGAGAGACAGGATA
* * * *
14511598 CGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCATATCTTAATATTTCTGTGTGCCAA
584 CGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGTATGCCAA
* *
14511663 TGCCATTTTAGTGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTGACGTGAAGTTTC
649 TGCCATTTTAGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** * *
14511723 ATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTT
1 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
*
14511788 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
66 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
14511853 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
** * * * * *
14511918 TCCCCATTTTAGACACTTTAATGGCTTTTAGCAGCAAACCTGTAAAATCTCAAAAGCTTTTTCAG
196 TCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
* * * * *
14511983 GGGGTGTGAGTTCTCGAGTTTTGATGAGGCATAGGGGGCCCATATAAGGGCAAAGTAGCAGCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACC
* * * * **
14512048 CATCACATATCATGTGCGCACACCCACCCCGGGCCCCCCGATCGTCGGAACCCTAATGCCGCCGG
326 CATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGG
*
14512113 TCAGGTTCTCCGACGATGCATAGGCGATGGTGCCTCGGCGAAGAAAAATGCTGCACTAGCACATG
390 TCAGGTTCT-C--C---G---A--CGATGGTGCCTCGGCGAAGAAAAATGCTGCACCAGCACATG
* * *
14512178 CCCAAGCCCAGCATGTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
444 CCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCC
* *
14512243 GTATGCCTAAGCCAACAGACGAAATGAGCGGGCAGG-CGGGCGGGCGGGCACTACGT-C-GACCA
509 GTATGCCTAAGCCAACAGAAGAAATGAGAGGGC-GGACGGGCGGGCGGGCACTAC-TCCTG-CCA
* *
14512305 GAGAGACAGGATACGCAAGTCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
571 GAGAGACAGGATACGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATAT
14512370 TTCTGTATGCCAATGCCATTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
636 TTCTGTATGCCAATGCCATTTTAGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
14512434 GAAGTTTC
701 GAAGTTTC
* * * *
14512442 ATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAATTTTTTGCTGTTCGGGATTGTTT
1 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
* * * *
14512507 AAAATTTTTTTAGAAGGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTTTACTTTTGTTGGC
66 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
14512572 ATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
14512637 TCCCCATTTTAGACACTGTAATGGCTACTGGCAGCAAACCTATAAAAGCTCAAATGCTCTTTAAG
196 TCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
* * *
14512702 GGGGTGTGAGTTCCCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACC
* * * *
14512767 CATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCGCCGGAACCCCAATTCTATCGGT
326 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGT
* * *
14512831 CAGGTTCTCCGACGATGGTGCCTCGGTGAAGAAAAATGCAGCACCAGCACATGCTCGAA-CCCAG
391 CAGGTTCTCCGACGATGGTGCCTCGGCGAAGAAAAATGCTGCACCAGCACATGC-CCAAGCCCAG
* * * * * *
14512895 CATGTGCTACCGCAACCATCGGTTTGATCCGATCTTAGACTGGGAATGAATTTCGTATGC
455 CATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14512955 TTAGACTGGG
Statistics
Matches: 1091, Mismatches: 119, Indels: 42
0.87 0.10 0.03
Matches are distributed among these distances:
704 61 0.06
705 71 0.07
706 118 0.11
707 4 0.00
708 157 0.14
709 43 0.04
710 1 0.00
711 1 0.00
712 1 0.00
714 1 0.00
715 1 0.00
716 1 0.00
717 40 0.04
718 3 0.00
719 360 0.33
720 224 0.21
721 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACC
CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGT
CAGGTTCTCCGACGATGGTGCCTCGGCGAAGAAAAATGCTGCACCAGCACATGCCCAAGCCCAGC
ATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACAGAAGAAATGAGAGGGCGGACGGGCGGGCGGGCACTACTCCTGCCAGAGAGACAGGATACG
CAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGTATGCCAATG
CCATTTTAGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
Found at i:14512964 original size:26 final size:26
Alignment explanation
Indices: 14512928--14512980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14512918 TTGATCCGAT
* *
14512928 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14512954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14512980 C
1 C
14512981 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14515336 original size:26 final size:26
Alignment explanation
Indices: 14515307--14515359 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14515297 CCATTCCGAT
14515307 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14515333 CTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14515359 C
1 C
14515360 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14517097 original size:26 final size:26
Alignment explanation
Indices: 14517061--14517111 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14517051 GGTACGATCA
14517061 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
14517087 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
14517112 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:14519780 original size:26 final size:26
Alignment explanation
Indices: 14519751--14519803 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14519741 CCGGTCCGAT
14519751 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14519777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14519803 C
1 C
14519804 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14520707 original size:26 final size:26
Alignment explanation
Indices: 14520656--14520708 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14520646 CTTATCCGAT
*
14520656 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTTCATATG
*
14520682 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTAGACTGGGAAAGAACTTC-ATATG
14520708 C
1 C
14520709 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTTCATATG
Found at i:14520846 original size:905 final size:902
Alignment explanation
Indices: 14514456--14522135 Score: 9842
Period size: 905 Copynumber: 8.6 Consensus size: 902
14514446 CTGTTGTAAC
* * * * *
14514456 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGAGCGGGATGCACAACC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
** * * * * * * * *
14514521 CGGGGATCGACCAGG-TCCCCTTCTACGTGCTG-TCAATTCTGCTACTGCAACCCTTGGTCTGGT
66 CGGGGATCGGTCGGGTTCCCC-TCTGCGTGCTGCT-GATCCTACTGCCGCAACCCTCGGTCTGGT
* * * * * * *
14514584 CCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACAAGCAAGCAGGCGA
129 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGG
* * *
14514649 GCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGG
193 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * *
14514714 TGAGTTTAGGCACATCTTAATATTTCTGCATGCCAACT-CCATTTTCATGGCTTGTAAATTCAAA
258 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAA-TGCCATTTTTATGGCTTGTAAATTCATA
14514778 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
322 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
14514843 TTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAAATTTTTCGAAAGGATTTTTGGCCCCAAAC
387 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
14514908 TTGTTAGACATGATGCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
452 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
14514973 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATAGTTTAATGGCTACTGGCA
517 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
**
14515038 GCAAACCTGTAAAATCTCAAATAATCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
582 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*** * *
14515103 GGGGGCCGGCATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCC
647 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCC
* ** ** * * *
14515168 TCCTAATCTTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCC
712 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * *
14515233 CGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTC
777 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
** * * *
14515298 CATTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAGTGGGAATGAACTCTGTATG
842 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
*
14515359 CCTAAGTCAACCCACG-AA--A---------CG---A----G-C--A--TGC---AT---C---C
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * ** ** * * *
14515391 CGGGGATCGATCGGG-TCCCCTTCTGCATGCTGCCGATCCTGTTATCGCAACCTTTGGCCTGGTC
66 CGGGGATCGGTCGGGTTCCCC-TCTGCGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGGTC
* * ** **
14515455 TAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA---GCGGATGAAC
130 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGC
* * * * **
14515517 GGGCAGGCACTACACCGGCCAGAGAGACAGGATGTGCAAGCTTTGGATCGATAGGGTGGTAGGTG
195 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
14515582 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTGGAAAATTCATACAA
260 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
14515647 CGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
325 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * *
14515712 TTGAAACTTTTTACAGTTTGTGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTG-CCCAAAGCTT
390 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTT
* *
14515776 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
454 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
14515841 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
519 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
14515906 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
584 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
14515971 GGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGCACACCCCCCGGCCCAC
649 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC
* * * *
14516036 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGATGATGCTCCGACGATGGTGCCCCG
714 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * * *
14516101 GCGAAGAAAAATACGGCACCAACACATGCCGGAGCCCAGCATGTGCTGCCGCAACCATCGGTCTG
779 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCG
14516166 GTCCGATCTTAGACTGGGAATGAACTCC--ATGCTTAGA-TAGGGAATGAACTCCGTATG
844 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATG
* ** * **
14516223 CCTAAGTCAACCCACGAAACGAGCATGTTGGTGCTCAGTAGGCCAGAGGGGCGGGATGCGCAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * *
14516288 CGAGGATCGATCAGG-TCCCCTTCTACCTACTGCCT-ATCCTACTACTGCAACCCTCGGTCTGGT
66 CGGGGATCGGTCGGGTTCCCC-TCTGCGTGCTG-CTGATCCTACTGCCGCAACCCTCGGTCTGGT
* * ** * * * *
14516351 CTAATCTTAGACTAGGAATGAACTTTGTATGCCTAAGCCAACCTACGAAACGA---ACGGGCAGA
129 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGG
* ** * * *
14516413 CGGGCGGGCACTGCGTTGGCCAGAGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
194 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
14516478 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATACA
259 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14516543 ATGGTCCCTTAAGCCTTCACGTGAAGTTACATGGCAAGACAACTCGTTTTCTATTTATCATGATT
324 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
14516608 TTTGAAACTTTTTACAGTTCGGGATTTTTTTAAATTCTTTT-GGAAGGATTTTTGGCCCCAAACT
389 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
14516672 TGGTAGACGTGATCCTTGTATTTTTATTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTG
453 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
14516737 TACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTCCAGACACTTTAATTGCTACTGGCAA
518 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14516802 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
583 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * ** * *
14516867 GGGG-CAATAAAAGGGCCAAGTACTAGTGCCTATCACACATCATGTGCGCACACACCCCCCGCCC
648 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC-CCCCCGGCCC
* * * *
14516931 CCCCGATCGCTGGAACCCCAAAGTCGCCGGTAAGGTTCT-C--CGA---T-----GATGGTGCCC
712 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * * *
14516985 TGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAACCCTCGATC
777 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
* * * *
14517050 CGGTACGATCATAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATG
842 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
14517111 CCTAAGTCAAGCCACGAAACGAGCATGTGGGCGCTTAACAGGCCAGAGGGGCGGGACGTGCAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
14517176 CGGGGATCGGTCGAG-TCCCTCTCTGCGTGCTACCGATCCTCCTGCCGCAACCCTCGGTCTGAT-
66 CGGGGATCGGTCGGGTTCCC-CTCTGCGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGGTC
* *
14517239 TCGATCTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA---GCGGGCGGG
130 T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGG
* * ** *
14517301 CGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGTGCAAGCTTTGGATCGACT-TGGTGGTAGG
194 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGG
*
14517365 TGGGTTTAGGGACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
258 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14517430 AATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
323 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
14517495 TTTTGAAACTTTTTGA-GGTTTGGGATTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCCCAAAC
388 TTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* ** *
14517559 TTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
452 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
14517624 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCTATTTCAAACACTTTAATGGCTACTGGTA
517 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14517689 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATA
582 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
14517754 GGGGGCCAACATAAGGGCCAAGTACCAGCACCCAT-AGCACATCATGTGCGCACACCCCCCGGCC
647 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA-CACATCATGTGCGCACACCCCCCGGCC
* * * *
14517818 CCCTCGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
711 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * **
14517883 CTGGTC-AAGAAAAATGCGGCACCAGCACATGCCTAAGCCTAGCATGTGCTGCCGCAACCCTCGG
776 C-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGG
* * * *
14517947 TCCAGTCTGATCTTAGACT-GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATG
840 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
14518009 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCAGCCAGAGGGGCGAGATGCGCAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * *
14518074 TGGGGATCGG-CTGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCTGCAACCCTCGGTCAGGTC
66 CGGGGATCGGTC-GGGTTCCCCTCTGCGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGGTC
* * * * * *
14518138 CGATCTTAGACTGGGAGTGAACTCTGTATGCCTAAGCCAACCGACGAAATGA-------GTGGTC
130 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGC
*
14518196 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTG
195 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * ** * * *
14518261 GGTTTAGGCACATCTTCACATTTTTGCACACCAATGCTATTTTTATGGCTTTTAAATTTATACAA
260 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
14518326 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
325 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
14518391 TTGAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC-TG
390 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
14518455 GTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-ATGCTGAAAACTC-AATGTG
455 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GCTAAAAACTCGAA-GTG
* * *
14518518 TACAAGATTTTATGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATAGCTACTGGCAG
518 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14518583 CAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-
583 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
14518647 GGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCAGGTGCGCACACCCCCCGGCCCT
648 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCC
* ** * **
14518712 CCCGATCGCCGGAACCCCAATGCCGCTGGTCCTGTTCTCTGACGATGCTCCGGTGATGGTGCCCC
713 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * *
14518777 GACGAAGAAAAATGCGGCACCAGCACATGCCAGAGCATAACATGTGCTGCCGCAACCTTCGATCC
778 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * *
14518842 AGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAAGTCCGTTTG
843 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14518902 CCAAAGTTAACCCACGAAACAAACATGCGGGTGATCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * * * * * *
14518967 TGGGGTTC-GACTGGGTACCACTCTCCGTGCTACCGATTCTGCTGCCACAACCCTCGATCCGGTC
66 CGGGGATCGGTC-GGGTTCCCCTCTGCGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGGTC
** * * * *
14519031 CAATCTTAGACTGTGAATGAACTCCATATTCCTAATCCAACCGACGAAACGAGCGGACGGGCGGG
130 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGG
* * ** ** *
14519096 CAGGCGGTCACTACGCCGGCCAGAGAGACGGGATGTACAAGCAATGGATCAATAGGGTGGTAGGT
194 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
14519161 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
259 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
14519226 ATGGTCCCTTAAGCC-TCACGTGAAGTTTCATTGCAAGACAACTCGTTTTCTATTTTTCATGATT
324 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* **
14519290 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCAACAAACTT
389 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
14519355 GGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
454 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
14519420 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGTTACTAGCAGC
519 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14519485 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTACGAGGGATAGG
584 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
** * *
14519550 GGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGG-CCCC
649 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC
* * * * **
14519614 CCGATCACCGAAACCCCAATGCCGCCGTTCAGGTTCTCCGACAATGCTCCGGTGATGGTGCCCCG
714 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * * * *
14519679 ACGAAGAAAAATGCTGCACCAGCACATGCTCGAGCCCAGCACGTTCTACCACAACCCTCGATCCG
779 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCG
14519744 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
844 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
14519803 CCTAAGTCAACACATGAAACGAGTGTACAGGCGCTCAGCCGGCCAGAAGGGAGGGATGCGTAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * *
14519868 CGGGGATCGATCGTGTACCCCTCTGTGTGCT-ATCGATCCTACTACCGCAACCCTTGGTTTGGTC
66 CGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCT-GATCCTACTGCCGCAACCCTCGGTCTGGTC
* * * *
14519932 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGAAGAAACGAGTGAGCAGGCGGG
130 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGG
** *
14519997 CGGGCGGGTGCTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
194 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
14520062 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACA
259 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
14520127 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATT
324 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** ** *
14520192 TTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTT
389 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * * *
14520257 GGTAAACATGGTCCTTGCATTTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
454 GGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
14520322 TACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
518 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14520387 CAAACCTGTAAAATCTCAAATGTTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
583 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14520452 GGGGCCAATATAAGGGCCAAGTAACAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCC
648 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCC
* ** * * * * *
14520517 CCCCGATCGCCGAAACCCCAATGCCATCGGCCAGGCTCTCCGATGATGCTCTGGCGATGGTGCCC
712 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* *
14520582 CGACGAAGAAAAATGTGGCACCAGCACTTGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
777 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
*** * * **
14520647 TTATCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCTATATG
842 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* ** *
14520708 CCTAAGTCAACCCACGAAACGAGTGTGCGGGCAATCAGCTGGCCAGAGGGGCGGGATGCGCAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * *
14520773 CGGGGATCGGCCGGGTTCCCCTATGCGTACTGGTGATCCCATTGCCACAACCCTCGGTCCGGTAT
66 CGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGGTCT
* * *
14520838 GATCTTAGACTGGGAATTAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGGAC
131 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGC
* * * * *
14520903 GGGCGGGCACTACGCCGGCCAGAGATATGAGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTA
195 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * ** *
14520968 TGTTTAGGCATATCTTCATCTTTCTATGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAA
260 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
14521033 TGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
325 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
** * * * * * *
14521098 TTGAAACTTTTTATTGTTTGGGATTTTTTAAAATACTTTT-GGAACGACTTTTGACCCCAAAATT
390 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
14521162 GGCAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATTCAGCTAAAAACTCGAAGTG
454 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
14521227 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCTATTTCAGACACTTTAATGGCTACTGGCAG
518 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
14521292 CAAACCTGTAAAATCTCAAATGCTCTTTAATGGTGTGTGAGTTCTCGAGGTTTCATGAAGGATAG
583 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
14521357 GGGGCCAACATAAGGGCCAAGTACCAGCACCCAT-AGCACATCATGTGCGCACACCCCCCGGCCC
648 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA-CACATCATGTGCGCACACCCCCCGGCCC
* * * * *
14521421 TCCCGATCGTCGAAACCCCAATGCCGCCGGTAAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
712 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* ** * *
14521486 TGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
777 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
* *
14521551 CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
842 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
14521612 CCTAAGTCAACACACGAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGAAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * * ** * *
14521677 CGGGGATTGGTCGGGGCCCCCTCCGCGTGCTGCTGATCCTACTGCTGCAACCTTCAATCTGATCC
66 CGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGGTCT
* * *
14521742 AATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA-----------GCG
131 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCG
* * * * * *
14521796 GGCGGGCACTACTCCGACCAGAGAAACGTGATGCGTAAGCCGTAGATCGATAGGGTGGTAGGTGG
196 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14521861 GTTTAGCCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
261 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
14521926 GGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCATTTTCTATTTTGCATAATTTT
326 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
*
14521991 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG--CCAAACTTGG
391 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
14522054 TAGACATGATCCGTGTATTTTTGTTGGCATGCACAAGAAAATTCAGCTAAAAACTCAAAGTGTAC
456 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
14522119 AAGATTTTGTAACCATT
521 AAGATTTTGTGACCATT
14522136 GTAAGGGCCA
Statistics
Matches: 5927, Mismatches: 751, Indels: 212
0.86 0.11 0.03
Matches are distributed among these distances:
863 1 0.00
864 42 0.01
865 9 0.00
866 611 0.10
867 1 0.00
870 100 0.02
873 1 0.00
876 3 0.00
879 3 0.00
881 1 0.00
883 2 0.00
884 2 0.00
886 92 0.02
887 6 0.00
888 638 0.11
889 91 0.02
890 40 0.01
891 14 0.00
892 403 0.07
893 367 0.06
894 237 0.04
896 43 0.01
897 555 0.09
898 201 0.03
899 79 0.01
900 106 0.02
901 756 0.13
902 181 0.03
903 227 0.04
904 347 0.06
905 763 0.13
906 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
CGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCG
GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
Found at i:14521596 original size:26 final size:26
Alignment explanation
Indices: 14521560--14521612 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14521550 CCGGTCTGAT
14521560 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14521586 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14521612 C
1 C
14521613 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14522380 original size:26 final size:26
Alignment explanation
Indices: 14522344--14522395 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14522334 CGATCCGATT
* *
14522344 TTAGATTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14522370 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14522396 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14523281 original size:26 final size:26
Alignment explanation
Indices: 14523245--14523297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14523235 TCGGTCTGAT
*
14523245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
14523271 CTTAGATTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
14523297 C
1 C
14523298 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:14524167 original size:26 final size:26
Alignment explanation
Indices: 14524138--14524190 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14524128 TCGGTCTGAT
*
14524138 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14524164 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14524190 C
1 C
14524191 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14525078 original size:26 final size:25
Alignment explanation
Indices: 14525029--14525078 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
14525019 CTTGTCTGAT
* *
14525029 CTTAGACTGGAATGAACTCTGTATA
1 CTTAGACTGGAATGAAATCCGTATA
14525054 CTTAGACTGCGAATGAAATCCGTAT
1 CTTAGACTG-GAATGAAATCCGTAT
14525079 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGAATGAAATCCGTATA
Found at i:14525270 original size:4 final size:4
Alignment explanation
Indices: 14525261--14525286 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
14525251 GATGAAATGA
14525261 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
14525287 ACTACGTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:14525969 original size:26 final size:26
Alignment explanation
Indices: 14525933--14525985 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14525923 TTGGTCCAAT
14525933 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
14525959 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14525985 C
1 C
14525986 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14526015 original size:905 final size:902
Alignment explanation
Indices: 14522140--14527291 Score: 6742
Period size: 893 Copynumber: 5.8 Consensus size: 902
14522130 ACCATTGTAA
* * * * **
14522140 GGGCCAATAAAAGGGCCAAGTACAAGCACCCATTGCACATCATGTGCGCACACCCCTCCGGCCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAACCC
* * * *
14522205 CCCGATCGCTAGAACCACAATGCCGTCGGTCAGGTTCTCCTACGATGCTCCTGCGATGGTGCCCC
66 CCCGATCGC-CGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * * *
14522270 -AGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTC
130 GA-TGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTT
* * *
14522334 CGATCCGATTTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
194 CGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * * ** *
14522399 AGTCAACTCACGAAATGAGCGTGCGGGCTCTCGGTCGGCTAGAGGGGCAGGATGCATAAGTCGGG
259 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
** * ** * * *
14522464 GATCGATTGGGTCCACCTCTGCGTGCTG-CTGATCCTGCTGCCGTAACCCTCGGTCCGATCCAAT
324 GATCGGCTGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCACAACCCTCAGTCCGGTCCGAT
* * * * *
14522528 CTTAGACTGGGAATGAACTCCATATGCCAAAGCCAATCGATGAAACGAGCGGGCAGACGGGCGGG
388 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGGG
** * * ** * * *
14522593 CTAGCACTACGCCGGCCAGAGAGACGAGTTGCGCAAGCTATGGATCGATCGTGTGGTACGTGGGT
453 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
14522658 TTCGGTACGTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
518 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14522723 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTG
583 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
14522788 AAACTTTTTACGATTCAGGATTTTTTAAACTTTTTTCGAAAGGA-TTTTGGCCCCAAACTTGGTA
648 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTA
14522852 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACA-TTCAGCTAAAAACTCGAAGTGTACA
712 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTTCAGCTAAAAACTCGAAGTGTACA
*
14522916 AGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
776 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
14522981 CTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTGGAGGTTTGATGAGGGACAGG
841 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
14523042 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCATCG-GCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGAACC
* ** *
14523106 GCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGATGATCGTGCC
65 -CCCCGATCGCC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * * * *
14523171 CTGACGAA-AAAAATGC-AGCACCAGTACATGCTCGAGCCCAGCATGTGCTGCCCCAACCCTTGG
128 CCGATGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
14523234 TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAAGGAACTCCGTATGCC
192 TTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
14523299 TAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAA----
257 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
14523360 --G--C--C-GGGTCCCCCTCTGCGTGCTGTTGATCCTGCTACCACAACCCTCGGTCCGGTCTGA
322 GGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCCGA
* * *
14523418 TCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGGGCGGGCGG
387 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGG
* * *
14523483 GCGGGCACTACGCCGACCAGATAGACGGGATGCGCAAGCCGTGGATCGATCGGGTGGTAGGTGGG
452 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * * *
14523548 TTTATGTACATCTTCATTTTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAGTG
517 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14523613 GTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
582 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
14523678 GAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCTCAAACTTGGT
647 GAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
** *
14523743 AGACGTGATCCTCATATTTTTGTTGGCATGCAC-AAAAATATTCAGCTAAAAACTCGAAGCGTAC
711 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAT-TTCAGCTAAAAACTCGAAGTGTAC
* *
14523807 AAGATTTTATGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAA
775 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
14523872 ACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
840 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
14523935 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-CACTG
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAAC-C
** * * * * *
14523999 CCCCGATCATCGAAACCCCAATGCCGCCGATCAAGTTCTCCGACGATGCTCCGGTGATGGTGCCT
65 CCCCGATCGCCG-AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
* * * * * *
14524064 TGACGAAAAAAAATGC-AGCACCAGCACATGCTCGTGCCCAGCATGTGCTGCCACAACCCTCGGT
129 CGATGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
14524128 TCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGCCT
193 TCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * *
14524193 AAGTCAACCCACGAAATGAACGTATGGGCGCTCAGCCGGCCTGAGGGGTGGGATGCGCAA-----
258 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * *
14524253 -G--C--C-GGGTCCCCCTCTGCGTGCTGTTGATCCTGCTACCACAACCCTCAGTCTGGTCTGAT
323 GGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCCGAT
* * * * *
14524312 CTTAGACTGGGAATGAACTCCATATGCGTAAGCCAATCGATGAAACGAGCGGGTGGGCAGGCGGG
388 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
14524377 CAGGCACTACGCCGACCAGATAGATGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGT
453 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
14524442 TTAGGTACATATTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
518 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
14524507 TCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCATTTTCTATTTTTCACAATTTTTG
583 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
14524572 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGGTTTGGCCCCAAACTTGGCA
648 AAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
14524637 GACGTGATCCTTGTATTTTTCTTGGAATGCACAAAACAA-TTCAGCCAAAAACTCAAAGTGTACA
712 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTTCAGCTAAAAACTCGAAGTGTACA
* * *
14524701 AGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAA
776 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14524766 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATA-G
841 CCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
14524828 GGGACAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCC-AGCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAACCC
* * *
14524892 CCTCGATCGTCGGACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGGCGATGGTG-CCC
66 CC-CGATCGCCGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* ** * *
14524956 TATCGAAGAAAAATATGGCACCAGCACAT-CCCGAGCCCAGCATGTGCTGCCGCAACCCTTGG-T
130 GAT-GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTT
* * * * *
14525019 CTTGTCTGATCTTAGACT-GGAATGAAC-TCTGTATACTTAGACTGCGAATGAAATCCGTATGCC
194 C-GGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
14525082 TAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGGGGTGGGATGCGCAAGCCG
257 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * *
14525147 AGGATTGGCTGGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAATCCGGTCTGA
322 GGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCCGA
* * * *
14525212 TCTTAGACTAGGAATGAACTCCGTAAGCCTAAGCCAA-CTGATGAAATGAGCGGGCGGGCGGGCG
387 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC-GACG-AA--A-CGAGCGGGCGGGCG
* * * *
14525276 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCATGGATGGATAGGGTGGTAG
447 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
***
14525341 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
512 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
14525406 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGA
577 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * ** * * *
14525471 TTTTTGAAACATTTTGCAATTCGGGATTTTCTAAAAATTTTT-GAAGGAGTTTTGGCGCCAAACT
642 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACT
* * *
14525535 TGGTAGACATGATTCTTGTATTTTTGTTGGCTTGCACAAAAAATTTCAGCTAAAAACTCGAAGTG
707 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTG
* * *
14525600 TACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
772 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14525665 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCAAGGTTTGATGAGGGATAG
837 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
14525730 G
902 G
**
14525731 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCACGCACACCCCCCTCGAACC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGAACC
* * * *
14525796 CCCTGATCGCCGAACCCTAAAGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCC
65 CCCCGATCGCCGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* ** * * * *
14525861 GGTGAAGAAAAATGCGACAGTAGCACATGCTCGAG-CCAGCATGTGCTGCCGCAACCATCGATTT
130 GATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC
* *
14525925 GGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
195 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
14525990 GTCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCGGGGG
260 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * *** * * *
14526055 ATCGACCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCTGTAACACTCAATCCGGTCCAATCT
325 ATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCCGATCT
*
14526120 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA----GCGGGCGGGC---TG
390 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGGGCG
*
14526178 GG-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTT
455 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ** *
14526242 AGGCACATCTTCAAATTTCTATGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTC
520 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* ** **
14526307 CCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATTATTTTCAAA
585 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * *
14526372 ACTTTTTGCGGTTCGAGATTTTTTATAATTTTTTTGAAGGAGTTTTCGCCCCAAACTTGGTAGAC
650 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
14526437 ATGATCCTTGTATATTTGTTGGCTTGCACAAAAAATTTTAGCTAAAAACTCGAAGTGTACAAGAT
715 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGAT
** * * * *
14526502 TTTGTGGTCATTTGGAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACTTG
780 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
14526567 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
845 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* **
14526624 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCCGGCCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAACCC
* *
14526689 CCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCT-C--CGA--------CGATGGTGCCCC
66 CCCGATCG-CCGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * * * *
14526743 GGTGAAGAAAAATGCGAGACCAGAACATGCCCGAGCCCAGCATATGCTGCCGTAACCCTCGGTCC
130 GATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC
* * * *
14526808 GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAA
195 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
14526873 GTCAACCCATGAAACGAGCGTACGAGCGCTCAGCAGGCCAGAGGGGCGGAATGCACAAGTCGGGG
260 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* ** * * * * * **
14526938 ATCGGCTGGGTCCGCCTCTATGAGCTGTCGATCCTGCTGCCGCATCCTTCGGTCTAGTCCGATCT
325 ATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCCGATCT
* * * *
14527003 TAGACTGGGAATGAACTCCGTTTGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
390 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGGGCG
*
14527068 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTT
455 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
14527133 AGTCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTC
520 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
14527198 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
585 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* **
14527263 ACTTTTTGCGGTTCAAGATTTTTTAAAAT
650 ACTTTTTACGGTTCGGGATTTTTTAAAAT
14527292 GCTTTTTAAG
Statistics
Matches: 3770, Mismatches: 420, Indels: 131
0.87 0.10 0.03
Matches are distributed among these distances:
882 42 0.01
883 228 0.06
887 10 0.00
889 2 0.00
890 100 0.03
891 568 0.15
892 307 0.08
893 1131 0.30
894 212 0.06
895 2 0.00
896 2 0.00
897 10 0.00
900 2 0.00
901 89 0.02
902 248 0.07
903 277 0.07
904 117 0.03
905 420 0.11
906 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAACCC
CCCGATCGCCGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
ATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCG
GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
TCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
Found at i:14526852 original size:26 final size:26
Alignment explanation
Indices: 14526816--14526868 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14526806 CCGATCCGAT
14526816 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14526842 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14526868 C
1 C
14526869 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14527574 original size:26 final size:26
Alignment explanation
Indices: 14527538--14527590 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14527528 CCAGTCTGAT
14527538 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14527564 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14527590 C
1 C
14527591 CTAAGCCAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14528289 original size:26 final size:26
Alignment explanation
Indices: 14528260--14528312 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14528250 CCGATCCGAT
14528260 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14528286 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14528312 C
1 C
14528313 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14529635 original size:900 final size:892
Alignment explanation
Indices: 14527564--14530089 Score: 3568
Period size: 900 Copynumber: 2.8 Consensus size: 892
14527554 ACTCCGTATG
*
14527564 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGCCGATGAAAC-AA---GCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGGCGGG
14527625 CACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAG
* *
14527690 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATTCAATGGTCCC
131 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* **
14527755 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
*
14527820 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
14527885 TGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTTGAAGTGTACAAGAT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAACAA-TCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
14527949 TTTGTGACCTTTTAAAAAAAATGTGCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT-
* *
14528014 GAAAATCTCAGATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGATGGATAGGGGGCCAA
454 GAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAA
* * * *
14528078 TATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACGCCCCCGGCCCCACAATCG
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCGATCA
*
14528143 CCGAAACCCCAATGCCGTCGGTCAGG-T-T---C--T-C-CGACGATGGTGCCCTGATGAA-AAA
583 CCG-AACCCCAATGCCGTCGGTCAGGTTCTCCGCGATGCTCGACGATGGTGCCCCGATGAAGAAA
* * *
14528198 ATGCAGG-AGCAGCACATGCCCGAGCCCAGCATATGCTACCGCAACCCTCGGTCCGATCCGATCT
647 ATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCT
* ** * *
14528262 TAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
711 TAGACTGGGAATGAACTCCGAATGCTTAGACCGGGAATGAACTCCATATGCCTAAGTCAAACCAC
* * * * *
14528327 GAAACAAGCGTGCGAGCGCTCAGCCGACCAGAGGGGCGGAATGCGTAAGCCGGGGATCGGTTGGG
776 GAAACAAGCGTGCGAGCACTCAACCGACCAGAGGGGCGGAATGCGGAAGCCGGGGATCGATCGGG
* * * * **
14528392 TCCCCCTCTATGAGCTACCGATCCTGCTGCCGCATCCTTCGATCTGGTCTGAT
841 TCCCCCTCTAT-AGCTACCGATCCTGCTGCAGCACCCTTCGATCCGATCCAAT
*
14528445 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA---A-CGGGCGGGCGGG
* * *
14528510 CGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGAGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGT
* * *
14528575 TTAGGAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGG
127 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
14528640 TCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCA
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* *
14528705 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCTAAACTTGGTA
257 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
14528770 GATGTGATACTTGTATTTTTGTTGGCATGCACAAAAACAATCAGCTAAAAACTCGAAGTATATAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATCAGCTAAAAACTCGAAGTGTACAA
14528835 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
14528900 CTGCAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGC
452 CTG-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGC
* * * *
14528965 TAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGGGTGCACACCTCCCCGGTCCCCCCG
516 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGG-CCCCCCG
* * **
14529030 ATCACCAGAACCCCAATACCGTCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGACA
579 ATCACC-GAACCCCAATGCCGTCGGTCAGGTTCTCCG-CGATGCTC-GACGATGGTGCCCCGATG
* * * * *
14529095 AAGAGAAATACGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCGTAACCCTCGGTCCGGTC
641 AAGA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
* * *
14529160 CGATCTTAGACCGGGAATGAACTCTGAATGCTTAGACCGGGAATGAACTCTATATGCCTAAGTCA
705 CGATCTTAGACTGGGAATGAACTCCGAATGCTTAGACCGGGAATGAACTCCATATGCCTAAGTCA
* * * *
14529225 AACCACGAAACAAGCGTGC-AGGCACTCAACCGGCCAGAGGGTCGGGATGTGGAAGCCGGGGATC
770 AACCACGAAACAAGCGTGCGA-GCACTCAACCGACCAGAGGGGCGGAATGCGGAAGCCGGGGATC
* * *
14529289 GATCGGGTCCCCCTCTGCAT-GCT-CTCGATCCTGTTGTAGCAACCCTT-GCTCCGATCCAAT
834 GATCGGGTCCCCCTCT--ATAGCTAC-CGATCCTGCTGCAGC-ACCCTTCGATCCGATCCAAT
* * **
14529349 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGATTCAACGAACGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGGCGGG
* * ** * *
14529414 CACTACATCGGCCAGAAAGACGGGATGTATAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAG
*
14529479 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
14529544 TTAATCCTTCACGTGAAGTTTCATGGCAAGATGGCTTGTTTTCTATTTTTCACGATTTTCAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * *
14529609 TTTTTGTGGTTC-GAGAGTTTTTAAAATTTTTTC-AGATGGAGTTTTGGCCCCAAACTTGGTAGA
261 TTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGGA-GGAGTTTTGGCCCCAAACTTGGTAGA
* * *
14529672 CGTGATCCTTGTAATTTTGTTGGCATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
14529737 TTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATTGCTACTGGTAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
*
14529802 GAGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGATGGATAGGGGGCCA
454 GA-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCA
* * ** *
14529867 ATATATGGGCCAAGTAACAGCACCCATCATACATCATGTGCGCACACCCCCCAGCCCCCCCGATC
518 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATC
*
14529932 ACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAG
582 ACC-GAACCCCAATGCCGTCGGTCAGGTTCTCC-GCGATGCT-CGACGATGGTGCCCCGATGAAG
* * * * *
14529997 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGTCTGATCTGA
644 -AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGA
*
14530062 TCTTAGACTGGGAATGAACTCCGTATGC
708 TCTTAGACTGGGAATGAACTCCGAATGC
14530090 CTAAGCCAAC
Statistics
Matches: 1454, Mismatches: 151, Indels: 62
0.87 0.09 0.04
Matches are distributed among these distances:
881 44 0.03
882 1 0.00
885 1 0.00
888 1 0.00
889 394 0.27
890 87 0.06
891 30 0.02
892 2 0.00
893 1 0.00
897 1 0.00
899 152 0.10
900 468 0.32
901 2 0.00
902 17 0.01
903 5 0.00
904 241 0.17
905 5 0.00
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAG
GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCG
AACCCCAATGCCGTCGGTCAGGTTCTCCGCGATGCTCGACGATGGTGCCCCGATGAAGAAAATGC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGAC
TGGGAATGAACTCCGAATGCTTAGACCGGGAATGAACTCCATATGCCTAAGTCAAACCACGAAAC
AAGCGTGCGAGCACTCAACCGACCAGAGGGGCGGAATGCGGAAGCCGGGGATCGATCGGGTCCCC
CTCTATAGCTACCGATCCTGCTGCAGCACCCTTCGATCCGATCCAAT
Found at i:14530780 original size:710 final size:710
Alignment explanation
Indices: 14529347--14532232 Score: 3675
Period size: 710 Copynumber: 4.0 Consensus size: 710
14529337 CTCCGATCCA
* * *
14529347 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGATTCAACGAACGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGA--CGA--AACGAGCGGGCGGGCG
* * * *** *
14529412 GGCACTACATCGGCCAGAAAGACGGGATGTATAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTT
62 GGCACTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
14529477 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTC
127 AGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * **
14529542 CCTTAATCCTTCACGTGAAGTTTCATGGCAAGATGGCTTGTTTTCTATTTTTCACGATTTTCAAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
** *
14529607 ACTTTTTGTGGTTC-GAGA-GTTTTTAAAATTTTTTC-AGATGGAGTTTTGGCCCCAAACTTGGT
257 ACTTTTTACGGTTCAG-GATG-TTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
14529669 AGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACA
319 AGACATGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
14529734 AGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATTGCTACTGGTAGCAAA
384 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14529799 CCTG-AGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGATGGATAGGGG
449 CCTGTA-AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * **
14529863 GCCAATATATGGGCCAAGTAACAGCACCCATCATACATCATGTGCGCACACCCCCC-AGCCCCCC
512 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCC
* * *
14529927 CGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA
577 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGA
* * * * * *
14529992 TGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGT-CTG
642 CGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCAGCCACAACCCTCGGTCCAG
14530056 ATCTG
707 -TCTG
* *
14530061 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
14530126 CTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
14530191 ACATCTTCATATTTCTAAGTGTCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCTTT
131 ACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
14530256 AAGCCTTCACATGAAGTTTTATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * *
14530321 TTTACGGTTCAGGATGTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAACCTGGTAGACGTG
261 TTTACGGTTCAGGATGTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
* * *
14530386 ATCCTTCTATTTTTGTTGGCTTGCACAAAAAAATTTAGCTTAAAACTCGAAGTGTACAAGATTTT
326 ATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
14530451 GTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
391 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
14530515 AATCTCAAATGCTCTTTAAGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCGAATATA
456 AATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
14530580 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTTGGCCCCTCCGATCGCC
521 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-TAGCCCCCCCGATCGCC
** * * * *
14530645 TAAACTCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTACCCCGACGAAGAAA
585 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAA
* ** * * * *
14530710 ATTATTCCACCAGCACATGCCCAAGCCTAGCATGTGCAGCCACAACCTTCGGTCCGGTCTA
650 AATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCAGCCACAACCCTCGGTCCAGTCTG
* * *
14530771 ATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGA----GCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * * *
14530832 CTACGGCAGCCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGA
66 CTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
14530897 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
14530962 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAATTTTTGAAACT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-ATTTTTGAAACT
* * * * *
14531027 TTTTACGGTT-AGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACGTAGTAGACA
260 TTTTACGGTTCA-GGATGTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* ** *
14531091 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAAAACAGCTAAAAACTCGAAGTGTACATGA
324 TGATCCTTCTATTTTTGTTGGCATGCAC--AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14531156 TTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
14531221 GTAAAATCTCAAATGCTCTTTGAGGGAGTGTGAGTTCTCGGGGTTTGATGAGGGATAGGGAGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
14531286 ATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCTAG-CCCCCCGAT
516 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCCCGAT
* * * ** ** * * * *
14531350 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCCCCGACAAAACAAGCGTACG-GGCGCACAGCCAA
581 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC-TCCG-ACGATG-GTAC-CCCGA
* * **** * * * * ** *
14531414 CCAGAGGGACGGGAT-TCACAAGTCGGGGATCGGTGAGTCCC---CCTCTGTGTGCTGCCAATCC
642 -C-GAAGAAAAATATGGCACCAG-C----A-C-AT--G-CCCAAGCC-CAGCATG-TG-C-AGCC
* *
14531475 TACTGCTGCAACCCTCAGTTCAGTCTG
691 -A------CAACCCTCGGTCCAGTCTG
*
14531502 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* ** * *
14531567 CTACG-CTGGCCAGAGAGACA-GGATGTGCAAGCTATAGATCGATAGGGTGGTTGGTGGGTTTAG
66 CTACGTC-GGCCAGAGAGA-AGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
14531630 GCACATCTTCATATTTTCTACA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTC
129 GCACATCTTCATA-TTTCTA-AGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
14531694 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTGTTTTTCATGATTTTTTAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * *
14531759 ACTTTCTGCGGTTCAGGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGA
257 ACTTTTTACGGTTCAGGATGTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
14531824 CATGATCCTTGC-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTC-AAGTGTACAA
322 CATGATCCTT-CTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAA
* *
14531887 GATTTTGTGACCGTTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14531952 CTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAGGTTTGATGCA-GGATAGGGGGC
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGC
* * *
14532016 CAAAATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-ATCCCCCCCG
514 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCCCG
* * * * * * *
14532079 ATCGTCGGAACCCCAATGCTG-CAGGTCAAGTTCTCCGGCGATGCTCTGACGATGGTGCTCCGGC
579 ATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGAC
* * * * *
14532143 GAAGAAAAATACGGCACCAGCAGATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGT
643 GAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCAGCCACAACCCTCGGTCCAGT
14532208 CTG
708 CTG
14532211 ATCTTAGACTGGGAATGAACTC
1 ATCTTAGACTGGGAATGAACTC
14532233 TGTATGCTTA
Statistics
Matches: 1888, Mismatches: 225, Indels: 123
0.84 0.10 0.06
Matches are distributed among these distances:
706 180 0.10
707 93 0.05
708 84 0.04
709 188 0.10
710 562 0.30
711 94 0.05
712 5 0.00
713 6 0.00
714 47 0.02
716 2 0.00
717 4 0.00
718 4 0.00
719 5 0.00
720 6 0.00
721 3 0.00
722 4 0.00
723 4 0.00
724 3 0.00
725 1 0.00
726 6 0.00
727 6 0.00
728 2 0.00
729 5 0.00
730 4 0.00
731 106 0.06
732 76 0.04
733 117 0.06
734 3 0.00
735 167 0.09
736 101 0.05
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (710 bp):
ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTACGGTTCAGGATGTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
ATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCCCGATCGCCG
GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAA
ATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCAGCCACAACCCTCGGTCCAGTCTG
Found at i:14532242 original size:26 final size:26
Alignment explanation
Indices: 14532213--14532265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14532203 CTAGTCTGAT
* *
14532213 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14532239 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14532265 C
1 C
14532266 CTAACTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14533145 original size:26 final size:26
Alignment explanation
Indices: 14533109--14533161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14533099 TCGGTCCAAT
*
14533109 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14533135 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14533161 C
1 C
14533162 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14533322 original size:26 final size:26
Alignment explanation
Indices: 14533293--14533345 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14533283 CCAGTCCGAT
14533293 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
14533319 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14533345 C
1 C
14533346 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14533476 original size:26 final size:26
Alignment explanation
Indices: 14533447--14533497 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14533437 GATCCGATCG
14533447 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
14533473 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14533498 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14535112 original size:26 final size:26
Alignment explanation
Indices: 14535076--14535125 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14535066 ATCCGATCTG
14535076 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCTGTATGCTT
14535102 AGACTGGGAATGAACTCTGTATGC
1 AGACTGGGAATGAACTCTGTATGC
14535126 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTGTATGCTT
Found at i:14535317 original size:893 final size:895
Alignment explanation
Indices: 14533471--14540616 Score: 8523
Period size: 893 Copynumber: 8.1 Consensus size: 895
14533461 ACTCCGTATG
*
14533471 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGTCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGCGGG
* * *
14533536 CACTACGTCGACCAGTGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAG
65 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
14533601 CCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCC
130 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
14533666 ATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCGATTTTTCATGATTTTCAAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * *
14533731 TTTTTGCAGTTCGAGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCGAACTTGGTAGACA
260 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* * * *
14533796 CGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTAGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
14533861 TTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
14533926 AAAATCACAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAGT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
14533991 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCACACCCCCCACGGCCCCACCGATC
520 ATAAGGG-C--G-ACCAGCACCCATCGCACATCATGTGCACACACCCCCC-CGGCCCCCCCGATC
* ** ** *
14534056 GCCAGAACCCCAATGTTGCCGGTCAGGATT-TCCGGCGATGCTTGGGCGATGGTGCCCCGACGAA
580 GCCGGAACCCCAATGCCGCCGGTCAGG-TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* * ** * *
14534120 GAAAAATACGGCACCAACACATGCCCGAGCTTAGCATGTGCTGTCGCAACCCTCGGTCCGATCCG
644 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCG
**
14534185 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
709 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * *
14534250 CCACGAAACGAGTGTGC--GCTCT-A-CCGACCAGAGGGGCGGGATTCGTAAGCCGGGGATCGGT
774 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATTCGCAAGCC-GGGATCGGT
* * * * ** * * * *
14534311 TGGGTCCCCCTCTATGTGCTGCCAATCCTACTGCCATAACCTTTGA-TCTGGTTCAAT
838 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGTCTGGTCCGAT
* * * * *
14534368 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGA---GTGGGCGGGCGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
* * *
14534430 ACTACG-CTGGCTAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGTGTTTAG
66 ACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** * * *
14534494 GCACATCTTCATATTTCTATGTGCCGATGCCATTTTTATGGCATGTAAATTCCTACAATGGTCCC
130 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* **
14534559 TTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * *** *
14534624 TTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTTGAACTTGGTAGACG
260 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* * *
14534689 TGATCCTTGTATTTTTTTTGGCATGCATAAAAAAAATCAGCTAAAAACTCGAAGTGTAAAAGATT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
14534754 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
14534819 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
14534884 ATAA-GG-G-CCAGCACCCATCACACATCATGTGCACACACCCACCCCGGCCCCCCCGATCACCG
520 ATAAGGGCGACCAGCACCCATCGCACATCATGTGCACACACCC-CCCCGGCCCCCCCGATCGCCG
* * ** * *
14534946 GAACCCCAATGACGCCGGTCAGGTTTTCCGATGATGCTTCGACGATGGTGCCCCGACAAAGAAAA
584 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * * *
14535011 ATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAACCCTCAGTCCGATCCGATCTG
649 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTT
*
14535076 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAGCCACG
714 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
* * * * * * *
14535141 GAATGAGCGTGTGGGCGCTCAACCGGCCAGAGGGGCGAGATTCACAAGCCGAGATCGGTCGAGTC
779 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATTCGCAAGCCGGGATCGGTCGGGTC
* ** * * * * * **
14535206 CCCCTTTGTGTACTACCAATCCTGCTGCTGCAACCCTTGA-TCCAGTCCGAT
844 CCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGTCTGGTCCGAT
* * * * *
14535257 CTTAGATTGGGCATGAACTCCGTAAGCCAAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGCGGGCGGGCGGG
* * * *
14535322 CACTACGTCGGTCAGAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTAG
65 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
****
14535387 GCGTGCCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
130 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
14535452 TTAAGCCTTCACGTGAATTTTCATGGCAAGATGACTCCTTTTCTATTTTTCATGATTTTCAAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * *
14535517 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
260 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* *
14535582 TGATCCTTGTA-TTTTTTTCGCATGCACAAAAAAATTCAGCTAAAAACAT-GAAGTGTACAATAT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGAT
* * *
14535645 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAACGGCTACTGGTAGCAAACCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
14535710 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGAGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * * ** ** * *
14535774 TACAA-GG-G--C--CA---A--G----T-ATGAG--CAC-CCACCAC--ACATCATG-TGGGC-
519 TATAAGGGCGACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGCCG
* * * * * * * * * *
14535816 AAACCCC-CTGGCCGTCGGTCAGGTTCTACGGTGATGTTCCGGCGACGGTGCCCCGGCAAAGAAA
584 GAACCCCAAT-GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * *
14535880 AATGCGACACCAGCACATGCTCGAGCCCAGCACGTGATGTCGCAACCCTTGGTCTGGTCCGATCT
648 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCT
* * *
14535945 TAGACTGGGAATGAACT-TCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTTAACCCA
713 TAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
* * * * * * * *
14536009 CGAAACGAGCATGGGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCTTC-AGATCGGCCG
777 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATTCGCAAGC--CGGGATCGGTCG
* * ** * *
14536073 GGTCCCCTTCTACGTGCTGCCGATCTTGCTATCGTAACCC-TCAGTCTGGT-AGAT
840 GGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGTCTGGTCCGAT
* * * *
14536127 CTTAGACTGGGAATGAACTCTC-TATGCCTAAGCCATCTGACAAAACAAGCGGGCGGGCGGACGG
1 CTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGAAACGAGC-GGC--G-GG-CGG
* *
14536191 GCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGG
60 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * * *
14536256 TATAGACACATCTTCAAATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATG
125 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
14536321 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTC
190 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* *
14536386 AAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAAC-T--T
255 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
14536448 ATACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAGA
320 AGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14536513 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTAGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
14536578 CTTGTAAAATCTCGAAT-CTTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGG
450 CCTGTAAAATCTCAAATGC-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14536642 GCCAATATAAGGACCAACCACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGGCCCCC
514 GCCAATATAAGG----GCGACCAGCACCCATCGCACATCATGTGCACACACCCCC-CCGGCCCCC
* * * * * *
14536707 TCGATCGTCGGAACCTCAATGCCGCTGGTCAGGTTCTCCGGCGATTCTCCGGCGATGGTGCCCCG
574 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* *
14536772 ACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCA--T--T-T-G-----CT--G-CT-
639 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTG
* * *
14536822 GT---A----ACACTCGG-TTCG-A-TCTG-AT-CTTAGACTGGGAATGAACT-TCGTATGCCTA
704 GTCCGATCTTAGACTGGGAAT-GAACTCTGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTA
* * * *
14536874 AGTCAGCCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC-AGGATGT-GCAAGTCG
767 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GAT-TCGCAAG-CC
* ** * ** *
14536937 GGGATCGGTCGGGTCCCCCTC-AGCGTGCTGCCGATCCTACTATCGCAACCC-TCAATCCAGTCT
829 GGGATCGGTCGGGTCCCCCTCTA-CGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGTCTGGTCC
14537000 GAT
893 GAT
* *
14537003 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA-------GCGGGCAGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
* * *
14537061 ACTACGTCGACCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
14537126 CACATCTTCATATTTCTGCCTGCCAATG-CATTTTTATGGCTTGTAAATT-ATACAATGGTCCCT
131 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * **
14537189 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGGTTTCTATTTTTCATGATTTTTGAAACT
196 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * *
14537254 TTTTACGGTTC-AAATTTTTTTAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
261 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
*
14537318 GATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
326 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
14537383 TGTGACCATTTGAAAAAAATGTCCCCAATTT-AGACACTTTAATGGTTACTGGCAGCAAACCTGT
391 TGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
14537447 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATATGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
14537512 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCTGCCCCGGCCCACCCGATT
520 ATAAGGG-C--G-ACCAGCACCCATCGCACATCATGTGCACACACC-CCCCCGGCCCCCCCGATC
* ** * * * * * * ** * *
14537577 GTCAAAAACACAATGCTGCCGGTCAGGTTCTCCGACGATGATCTGGTGATGGTGCCTCGACGATG
580 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* ** * * *
14537642 AAAAATACTACACCAGCACATGCCCTAGCCCAGCATGTGCTATCGTAA-CC-C--TC-GGTCCGA
645 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGA
* *
14537702 TC-----C-------G-A-----T-T--TTAGATTGGGAATGAACTCAGTATGCCTAAGTCAACC
710 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * * * *
14537746 CACGTAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAA-CTCGGGGATCGGC
775 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATTCGCAAGC-C-GGGATCGGT
* * *
14537810 CGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCCACAACCC-TCAGTCTGGTCTGAT
838 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGTCTGGTCCGAT
*
14537867 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGTCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGCGGG
* * *
14537932 CACTACGTCGACCAGTGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAG
65 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
14537997 CCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGCCCC
130 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
14538062 ATAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCTTTTTCGATTTTTCACGATTTTCAAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * * *
14538127 TTTCTGCAGTTCGAGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
260 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* *
14538192 TGATCCTTGT-TTTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGAT
325 TGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
14538256 TTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATAGCTACTGGCAGCAAATCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
14538321 TAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
14538386 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCAGCCCCCCCGATC
519 TATAAGGG-C--G-ACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATC
* * * *
14538450 GCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAG
580 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
** ** * *
14538515 AAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CTGCAAAGCTCGGTTTGGTCTG
645 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCTGGTCCG
* * * *
14538579 ATCTCAGACTGGGAAATGAAATCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
709 ATCTTAGACTGGG-AATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
** * ** * * *
14538644 AACACGAAACGAGCGTGCGGGCGCTCAGCCAGCTTGAGTGGCCG-GATGCGCAA-CCTGGGGATT
773 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGGCGAGATTCGCAAGCC--GGGATC
* * * *
14538707 GGTCGGGTCCCCCTCTACATGCTACCGATCCTGCTGCCGCAACCC-TCAGTCCT-CTCCTAT
835 GGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGT-CTGGTCCGAT
* *
14538767 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GCGGGAGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
* * * *
14538825 ACTACGCCGGCCGGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * * *
14538890 CACATCTTCATATTTCTACGGGCCAATGCCATTTTTATGACTTCTAAATTCATACAATGGTGCCT
131 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
14538955 TAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTGTTCACGATTAT-AAAACT
196 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * * *
14539019 TTTTGCTGTTCGGGATTTTTTAAAATTTTTTCAGAGGGAGTTTTGGCCCCAAACTTGGTAGACAT
261 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
14539084 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
326 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
14539149 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
14539214 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATA
456 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
14539279 TAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCCCGGCCCCTCCGATCG
521 TAAGGG-C--G-ACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCCGGCCCCCCCGATCG
* * * ** **
14539344 TCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCTGGGTGAAGA
581 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * * *
14539409 AAAATGTGGCATCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGCTCTGGTCCGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGAT
* * ** * * *
14539474 CTTAGAGTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCT
711 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
* * *** * *
14539539 ACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGC-AGGAAGAGTAAGCCGAGGATCGGCC
776 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATTCGCAAGCCG-GGATCGGTC
** * * ** **
14539603 GGGTCCCCCTCTGTGTGCTGCTGATCCTACTGCCATAA-CCTTCAGTCTGGTCTAAT
839 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGTCTGGTCCGAT
* *
14539659 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGCGGG
* * * * *
14539724 CACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGAATTGATAGGGTGGTAGGTGGGTCTAG
65 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
14539789 GCACATCTTCATATTTCTGCGTGCCAATGGCATTTTTATGGCTTGTTATTTCATACAATGGTCCC
130 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
14539854 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTCCAAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
*
14539919 TTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
260 TTTTTACGGTTCGA-GATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
14539983 CGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGA
323 CATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
14540048 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
14540113 ATAAAATCTTAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
14540178 ATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCGAT
518 ATATAAGGG-C--G-ACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGAT
* *
14540242 CGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAA
579 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* * * * * *
14540307 GAAAAATGTGGCACCAGCACATGCCTGGGCCCAACATGTGCTGCCGCAACCCTCGGTCGGGTCCG
644 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCG
* * * *
14540372 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCTGTATGCGTAAGTCAAC
709 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * * ** * **
14540437 CCGCGAAACCAGCTTGCCGGCACTCAATCGGCCAGAGGGTG-G-GATGCGCAAGTAGGGGATCGG
774 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG-GCGAGATTCGCAAG-CCGGGATCGG
* * * * * *
14540500 TCGGGTCCCCCTCTACATGCTGCCGATCCTACTGCCCCAA-CCATCGGTCCT-GTTCGAT
837 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGT-CTGGTCCGAT
* * *
14540558 CTTAGGCTGGGAATGAACTCCGCATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCG
14540617 ACGGGTGGGC
Statistics
Matches: 5386, Mismatches: 691, Indels: 342
0.84 0.11 0.05
Matches are distributed among these distances:
861 38 0.01
862 85 0.02
863 21 0.00
864 575 0.11
865 10 0.00
866 1 0.00
868 1 0.00
869 5 0.00
870 255 0.05
871 60 0.01
872 223 0.04
873 170 0.03
874 329 0.06
875 386 0.07
876 51 0.01
877 4 0.00
878 15 0.00
879 8 0.00
881 1 0.00
883 4 0.00
885 3 0.00
886 231 0.04
887 5 0.00
888 9 0.00
889 94 0.02
890 27 0.01
891 338 0.06
892 488 0.09
893 815 0.15
894 2 0.00
895 4 0.00
896 5 0.00
897 48 0.01
898 1 0.00
899 114 0.02
900 580 0.11
901 114 0.02
902 266 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCGACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGCCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAG
ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATTCGCAAGCCGGGATCGGTCGGGTCCC
CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTCAGTCTGGTCCGAT
Found at i:14535983 original size:26 final size:26
Alignment explanation
Indices: 14535943--14535995 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14535933 CTGGTCCGAT
* *
14535943 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14535969 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14535995 C
1 C
14535996 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14538633 original size:26 final size:27
Alignment explanation
Indices: 14538584--14538634 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
14538574 GTCTGATCTC
*
14538584 AGACTGGGAAATGAAATCTATATGCTT
1 AGACTGGGAAATGAAATCCATATGCTT
* *
14538611 AGACTGGG-AATGAACTCCGTATGC
1 AGACTGGGAAATGAAATCCATATGC
14538635 CTAAGTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (27 bp):
AGACTGGGAAATGAAATCCATATGCTT
Found at i:14540373 original size:900 final size:894
Alignment explanation
Indices: 14535826--14540614 Score: 5877
Period size: 864 Copynumber: 5.4 Consensus size: 894
14535816 AAACCCCCTG
* * * * * * *** * *
14535826 GCCGTCGGTCAGGTTCTACGGTGATGTTCCGGCGACGGTGCCCCGGCAAAGAAAAATGCGACACC
1 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACC
* * * * *
14535891 AGCACATGCTCGAGCCCAGCACGTGATGTCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAA
66 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* * * * *
14535956 TGAACTTCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCAT
131 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * **** *
14536021 GGGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCTTCAGATCGGCCGGGTCCCCTTCTAC
196 GCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAA-CCGGGGATCGGCCGGGTCCCCCTCTAC
* * * ** ** *
14536086 GTGCTGCCGATCTTGCTATCGTAACCCTCAGT-CTGGT-AGATCTTAGACTGGGAATGAACTCTC
259 ATGCTGCCGATCCTACTGCCACAACCCTCAGTCCTGGTCTGATCTTAGACTGGGAATGAACTC-C
* * * * * *
14536149 -TATGCCTAAGCCATCTGACAAAACAAGCGGGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAG
323 GTATGCCTAAGCCAACCGACGAAACGAGCGAGC--G-GG--GGGCGGGCACTACGCCGGCCAGAG
* * * * *
14536213 AGACGAGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTATAGACACATCTTCAAATTTT
383 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT-TAGGCACATCTTCATATTTC
* *
14536278 TGTGTGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAA
447 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * *
14536343 GTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCAAAACTTTTTACGGCTCGAGAT
512 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTCAAAACTTTTTGCAGTTCG-GAT
* * * *
14536408 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAAC-T--TATACATGATCCTTGTATTTTTA
575 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
* *
14536470 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAGAAGATTTTGTGACCATTTGAAAA
640 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
14536535 AAGTGTCCCCATTTCAGACACTTTAATGGCTATTAGCAGCAAACTTGTAAAATCTCGAAT-CTTC
705 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-TC
* * * **
14536599 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGACCAACCACC
769 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
14536664 AGCACCCATCGCACATCATGTGCGCACACCCCCTCCGGCCCCCTCGATCGTCGGAACCTCAAT
834 AGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCTCGATCGCCGGAACCCCAAT
* * * *
14536727 GCCGCTGGTCAGGTTCTCCGGCGATTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACC
1 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACC
* * * * *
14536792 AGCACATGCTCGAGCCCAGCATTTGCTGCTGTAACACTCGG--T--T-CGA---T---C------
66 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* * *
14536840 TG--------AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAGCCCACAAAACGAGCGT
131 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
14536896 GCGGGCGCTCAACCGGCCAGAGGGGCAGGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTC-AG
196 GCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAA-CCGGGGATCGGCCGGGTCCCCCTCTA-
* ** * * *
14536960 CGTGCTGCCGATCCTACTATCGCAACCCTCAATCC-AGTCTGATCTTAGACTGGGAATGAACTCC
258 CATGCTGCCGATCCTACTGCCACAACCCTCAGTCCTGGTCTGATCTTAGACTGGGAATGAACTCC
* * * *
14537024 GTATGCCTAAGCCAACCGATG-AA--A-CGAGC---GGGCAGGCACTACGTCGACCAGAGAGACG
323 GTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
14537082 GGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCT
388 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTGCGT
*
14537147 GCCAATG-CATTTTTATGGCTTGTAAATT-ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
452 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
** * ** * * ** *
14537210 ATGGCAAGACGACTCGGTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAATTTTTTT
517 ATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTCAAAACTTTTTGCAGTTCGGATTTTTTA
* * *
14537275 AAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCA
581 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
* *
14537340 TGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGT
646 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
14537405 CCCCAATTT-AGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAA
711 CCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
14537469 GGGGTGTGAGTTCTCGAGGTTTAATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACC
775 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * ** * *
14537534 CATTGCACATCATGTGCACACACCTGCCCCGGCCCACC-CGATTGTCAAAAACACAAT
840 CATCGCACATCATGTGCGCACACC--CCCCGGCCC-CCTCGATCGCCGGAACCCCAAT
* * * * ** * * * * *
14537591 GCTGCCGGTCAGGTTCTCCGACGATGATCTGGTGATGGTGCCTCGACGATGAAAAATACT-ACAC
1 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT-GTGGCAC
* ** *
14537655 CAGCACATGCCCTAGCCCAGCATGTGCTATCGTAA-CC-C--TC-GGTCCGATC-----C-----
65 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* * *
14537705 --G------AT-T--TTAGATTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGTAACGAGCG
130 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* *
14537759 TGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAACTCGGGGATCGGCCGGGTCCCCCTCTA
195 TGCGGGCGCTCAGCCGGCCAGAGGGG-CGGATGCGCAAC-CGGGGATCGGCCGGGTCCCCCTCTA
*
14537824 CATGCTGCCGATCCTGCTGCCACAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCC
258 CATGCTGCCGATCCTACTGCCACAACCCTCAGTCCTGGTCTGATCTTAGACTGGGAATGAACTCC
* * * *
14537888 GTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGTCGGGCACTACGTCGACCAGTGAGAC
323 GTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGAC
* * * *
14537953 GGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGCCACATCTTCATATTTGTGCA
387 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTGCG
* * *
14538018 TGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGCCCCATAAGCCTTCACGTGAAGTTT
451 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
14538083 CATGGCAAGATGACTCTTTTTCGATTTTTCACGATTTTCAAAACTTTCTGCAGTTCGAGATTTTT
516 CATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTCAAAACTTTTTGCAGTTCG-GATTTTT
*
14538148 TAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTG
579 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTG
* *
14538212 GCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAG
643 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * *
14538277 TGTCTCCATTTCAGACACTTTAATAGCTACTGGCAGCAAATCTGTAAAATCTCAAATTCTCTTTA
708 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
14538342 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCA
773 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
14538407 CCCATCGCACATCATGTGCACACACCCCCCAGCCCCCCCGATCGCTGGAACCCCAAT
838 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAAT
* * * * *
14538464 GCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATATGGCACC
1 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACC
* ** * * *
14538529 AGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAAGCTCGGTTTGGTCTGATCTCAGACTGGGAA
66 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG-A
* * **
14538594 ATGAAATCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCG
130 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* ** * * *
14538659 TGCGGGCGCTCAGCCAGCTTGAGTGGCCGGATGCGCAACCTGGGGATTGGTCGGGTCCCCCTCTA
195 TGCGGGCGCTCAGCCGGCCAGAG-GGGCGGATGCGCAACC-GGGGATCGGCCGGGTCCCCCTCTA
* * * * *
14538724 CATGCTACCGATCCTGCTGCCGCAACCCTCAGTCCT-CTCCT-ATCTTAGATTGGGAATGAACTC
258 CATGCTGCCGATCCTACTGCCACAACCCTCAGTCCTGGT-CTGATCTTAGACTGGGAATGAACTC
* *
14538787 CGTATGCCTAAGCCAACCGACG-AA--A-CGAGC---GGGAGGGCACTACGCCGGCCGGAGAGAC
322 CGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGGGGCGGGCACTACGCCGGCCAGAGAGAC
* *
14538845 AGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTACG
387 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT-AGGCACATCTTCATATTTCTGCG
* * * *
14538910 GGCCAATGCCATTTTTATGACTTCTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTT
451 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
14538975 CAAGGCAAGACGACTCGTTTTCTATTGTTCACGATTAT-AAAACTTTTTGCTGTTCGGGATTTTT
516 CATGGCAAGACGACTCATTTTCTATTTTTCACGATT-TCAAAACTTTTTGCAGTTC-GGATTTTT
* * *
14539039 TAAAATTTTTTCAGAGGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGG
579 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
14539104 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
644 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
14539169 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
709 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
14539234 GGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
774 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
14539299 CCATCGCATATCATGTGCGCACACCCCCCCCGG-CCCCTCCGATCGTCGGAACCCCAAT
839 CCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCT-CGATCGCCGGAACCCCAAT
* * ** * *
14539357 GCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCTGGGTGAAGAAAAATGTGGCATC
1 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACC
* * * * *
14539422 AGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGCTCTGGTCCGATCTTAGAGTGAGAA
66 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* *
14539487 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCTACGAAACGAGCGT
131 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * **
14539552 GCGGGCGCTCAGTCGGCCATAGGGGCAGGAAGAGTAAGCCGAGGATCGGCCGGGTCCCCCTCTGT
196 GCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAA-CCGGGGATCGGCCGGGTCCCCCTCTAC
* * * * *
14539617 GTGCTGCTGATCCTACTGCCATAACCTTCAGT-CTGGTCTAATCTTAGACTGGGAATGAACTCCG
259 ATGCTGCCGATCCTACTGCCACAACCCTCAGTCCTGGTCTGATCTTAGACTGGGAATGAACTCCG
*
14539681 TATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACG
324 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
14539746 GGATGCGTAAGCCGTGAATTGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTGCGT
388 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT-TAGGCACATCTTCATATTTCTGCGT
* * *
14539811 GCCAATGGCATTTTTATGGCTTGTTATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
452 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
14539876 ATGGCAAGACGACTCATTTTCTATTTTTCACGATTTCCAAAACTTTTTGCGGTTCAGGATTTTTT
517 ATGGCAAGACGACTCATTTTCTATTTTTCACGATTT-CAAAACTTTTTGCAGTTC-GGATTTTTT
14539941 AAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
580 AAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
* *
14540006 CATGTACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
644 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
14540071 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAA
709 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
14540136 AGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCAC
774 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
*
14540201 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCAGAACCCCAAT
839 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAAT
14540257 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACC
1 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACC
* * * *
14540322 AGCACATGCCTGGGCCCAACATGTGCTGCCGCAACCCTCGGTCGGGTCCGATCTTAGACTGGGAA
66 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* * * * * * * *
14540387 TGAACTCCGTATGCTTAGACTAGAAATGAACTCTGTATGCGTAAGTCAACCCGCGAAACCAGCTT
131 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * ** ** *
14540452 GCCGGCACTCAATCGGCCAGAGGGTG-GGATGCGCAAGTAGGGGATCGGTCGGGTCCCCCTCTAC
196 GCGGGCGCTCAGCCGGCCAGAGGG-GCGGATGCGCAA-CCGGGGATCGGCCGGGTCCCCCTCTAC
* * * * *
14540516 ATGCTGCCGATCCTACTGCCCCAACCATCGGTCCTGTTC-GATCTTAGGCTGGGAATGAACTCCG
259 ATGCTGCCGATCCTACTGCCACAACCCTCAGTCCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * *
14540580 CATGCCTAAGCCAATCGACGAAACGAGCGGGCGGG
324 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGGG
14540615 CGACGGGTGG
Statistics
Matches: 3381, Mismatches: 408, Indels: 200
0.85 0.10 0.05
Matches are distributed among these distances:
861 36 0.01
862 85 0.03
863 26 0.01
864 584 0.17
865 16 0.00
867 1 0.00
868 5 0.00
872 99 0.03
873 123 0.04
874 88 0.03
875 389 0.12
876 42 0.01
877 1 0.00
878 8 0.00
883 1 0.00
884 2 0.00
890 1 0.00
891 294 0.09
892 351 0.10
893 135 0.04
895 1 0.00
896 13 0.00
897 4 0.00
898 1 0.00
899 114 0.03
900 567 0.17
901 129 0.04
902 265 0.08
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCCGGCCAGAGGGGCGGATGCGCAACCGGGGATCGGCCGGGTCCCCCTCTACAT
GCTGCCGATCCTACTGCCACAACCCTCAGTCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAACGAGCGAGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAGGCACATCTTCATATTTCTGCGTGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCATTTTCTATTTTTCACGATTTCAAAACTTTTTGCAGTTCGGATTTTTTAAAATT
TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAAT
Found at i:14540403 original size:26 final size:26
Alignment explanation
Indices: 14540374--14540426 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14540364 CGGGTCCGAT
* *
14540374 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
*
14540400 CTTAGACTAGAAATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
14540426 C
1 C
14540427 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:14542790 original size:26 final size:26
Alignment explanation
Indices: 14542761--14542811 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14542751 GGTCCGATCT
14542761 TAGACTAGGAATGAACTCCGTATGCG
1 TAGACTAGGAATGAACTCCGTATGCG
*
14542787 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
14542812 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCG
Found at i:14544261 original size:876 final size:874
Alignment explanation
Indices: 14540626--14548041 Score: 8645
Period size: 876 Copynumber: 8.5 Consensus size: 874
14540616 GACGGGTGGG
*
14540626 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
14540691 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
14540756 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAG
131 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
14540821 AGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCGGCCCCCCGATTGTC-GAAA
196 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCGATCGTCGGAAC
** * * **
14540885 CCCAATGCCGCC--T---G---TAAGGT--T-CTCCGACGATGGTGCCTCGGCGAAGAAAAATGT
260 CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAC
* *
14540939 GGCACCAGCACATGCCCGAGCCTAGCATGTGTTG-TCGCAACCCTCGGTCCGATCTGATCTTAGA
325 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCG----G-TC-----
*
14541003 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAAC-CTACGAA
379 C-------G--------AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAC-ACGAA
* * * * * * * * *
14541067 ACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGGAAGCGTAAGTCGAGGATCGGCCGAGTCC
427 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * * * ** ** * *
14541132 CCCTCTGTGTGCTGCTGATCCTACTGCCATAACTTTCAGTCTGGTCTAATCTTAGACTTGGAATG
492 CCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATG
* * * *
14541197 AACTCCGTATGCCTAAGCCAACCGACGAAATGA--GAG-GGCGGGTGGGCGGACACTACGCCGGC
557 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGC
* * * * * *
14541259 CAGAGAGACGAGATGCGCAAGCCTTGAAACGATAGGGTGGTACGTTGGTTTAGGCACATCTTCAT
622 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** * *
14541324 ATTTCTGTGTTCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
687 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * ** *
14541389 GTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTAATGATTTTTGATCCTTTTTGCGGTTC
752 GTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * *
14541454 AAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATC
817 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
14541512 CTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
14541577 ACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGTAGAAAACTTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
14541642 CTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAA
131 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
**
14541707 GGCCAAGTACCAGTGCCCATCGCACATCATGTGCGCACA-CCCCGAGCCCCCCCGATCGTCGGAA
196 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCG-G-CCCCCCGATCGTCGGAA
* * * * *
14541771 CCCCAAT-------G-CA-----ACCGGTGATGCTCAGACGATGGTGACCCAACGAAGAAAAATG
259 CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA
** * * * * *
14541823 CGAAAACCAGCACATGCCCGAGTCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGGTCTTAG
324 CG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * * * *
14541888 ACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAACGTGCGGGCGCTTAGTCGGCT
388 ACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
14541953 AGAGAGGCGGGATGTGCAAGCCGGGGATCGGTTGGGTCCCCCTTTGCGTCCTGCTGATCCTGCTG
453 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* * * ** * * *
14542018 TCGCAACCCTCAGTCTA-TCCAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAATCAAC
518 CCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
14542082 GAAACGAGTGGGCAGACGGGCGGGCGGGCACTACGCTGGCCAGAGAGATGGGATACGCAAGCCGT
583 GAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
14542147 GGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
647 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
14542212 GTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
712 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
14542277 GTTTTCTATTTTTCATGATTTTTGAAACTATTTACGGTTC-AGGATTTTTTAAAATTTTTTC-GA
777 GTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGA
* * *
14542340 ATGGTGTTTTAGCCCCAAACTTGGTAGATGTGATC
841 A-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
14542375 CTTGTATTTTTTTTGGCATGAACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
14542440 ACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
14542505 CTCAAATGCTCTTTAAGGGGGTGTCAGTTCTTGAGGTTTGATGGGGGATAGGGGGCCAATATAAG
131 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
14542570 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCACCCGCCCCCCCGATCG-CTGGA
196 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCGGCCCCCCGATCGTC-GGA
* * * ** * *
14542634 ACCCTAATGTCGCCGGTCAGGTTCTCCGATGATGCTGTGGCGATGGTGCCCCGATGAAGAAAAAT
258 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* *
14542699 ACGACACCAGAACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAG
323 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--TC--G---G-TC----
* *
14542764 ACTAGGAATGAACTCCGTATGCGTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
374 -C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAA
* * * ***
14542829 ACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGAATAG-GCAAGTTAGGGATCGGTCGGGTC
427 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT-GCGCAAGCCGGGGATCGGTCGGGTC
* * * ** *
14542893 CCCCTCTGCGTGCTGCCAATCTTGCTACCACAACCCTTGGTCC-GATCCGATCTTAGACTGGGAA
491 CCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAG-TCTGATCTTAGACTGGGAA
* *
14542957 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-----------GTGGGCGGGCACTACGTCG
555 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCG
* * * *
14543011 GCCTGAGAGACGGGATGCGCAAGTCGTGGATCAATAGGGTGGTAGGCGGGTTTAGGCACATCTTC
620 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* **
14543076 ATATTTTTGCATGCCAATGCCATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
685 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
14543141 ACGTGAAGTTTCATGGCAAGACGAGTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGT
750 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * * * *
14543206 TTGGGATTTTTTAAACTTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAAACGTGATC
815 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
14543266 CTTGTATTTTTGTTGGCATGCATAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
14543331 ACCATTTGAAAAAAATATCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
14543396 CTCATATGCTCTTTAAAGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
131 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* **
14543461 GGCCAAGTACCAGCACCCATTGCACATCATGTAAGCACACCCCTCGGCCCTCCCGATCGTCGGAA
196 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CGGCCC-CCCGATCGTCGGAA
* ** * * *
14543526 CCCCAATACCGTTGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCTGGCGAAGAAAAATA
259 CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA
** *
14543591 CGGCACCAGCACATGGTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGA
324 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * *
14543656 CTGGGAATGAACTCCGTATGCGTAAGTCAACACACGAAACGAGCGTGCGGGCGTTCAACCGGCTA
389 CTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
14543721 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATGCTACTGC
454 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
* * * * * *
14543786 CACAACCCTCACTCCTGTCTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCTAACCGATG
519 CACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
14543851 AAACGAGCGGGCAAGCAGACTGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGCAAGCCGTG
584 AAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * *
14543916 TATCGATA-GGTGGTAGGTGGGTTAAGGCACATCTTAATATTTCTCCAAGCCAATGCCATTTTTA
648 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
14543980 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAGGACGACTCA
713 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** *
14544045 TTTTTTATATTTCACGATTTTTGATCCTTTTTACTGTTCGAGATTTTTTAAAATTTTTTCGGAAG
778 TTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* *
14544110 GAGTTTTGGCCCCAAACTTAGTAGACTTGATC
843 GAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
14544142 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCGGCTAAAAACTGGAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
14544207 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTATAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
14544272 CCCAAATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAG
131 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
14544337 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTGCCGGCCCCCCCGATCG-CTGGA
196 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCGG-CCCCCCGATCGTC-GGA
* * * * * *
14544401 ACCGCAATGCCACCGGTCAGGTTCTCTGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAAT
258 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * ** * * *
14544466 ACGGCACCAGCACATGCCCGTGCCCGGCATGTGCTATTGTAACCCTCAGTCCGGTCCTATCTTAG
323 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAG
* * * *
14544531 ACTGAGAATGAACTCCAG-ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
388 ACTGGGAATGAACTCC-GTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * *** * * *
14544595 CAGAGGGGTGGGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCTGTGTGCTGCTGATCCTGTT
452 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * *
14544660 GCTACAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGA
517 GCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * **
14544725 CGAAACGAGGGGGCAGGCAGGCGGGTGGGCACTATGCAGGCTAGAGAGATGGGATATGCAAGCCG
582 CGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * **
14544790 TGGATCGATAGGGTGGAAGGTGGGTTTAGGTACATCTTCATATCTCTATATGCCAATGCCATTTT
646 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
14544855 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGATGACT
711 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
14544920 CATTTTTTATTTTTCACAATTTTTGAAACTTTTT---G--C-AG---------------TTCGGG
776 CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
14544964 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
841 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
14544998 CCTGTATTTTTGTTGGCATGTA-AAAAGAAAATCAGCCAAAAACTCGAAGTGTACAAGATTTTGT
1 CTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
14545062 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTGTAAAA
65 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * ** * *
14545127 TCTCAAATTCTCTTTAAGACGGG-GTGAGTTCTTAAGGTTTGATAAGGGATCGGGGGCCAATATA
130 TCTCAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
14545191 AGGGCCAAGTACCAGCACCCATCGGACATCATGTACGCACAACCCCCTTGGCCCCCCGATCGTCG
194 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC--GGCCCCCCGATCGTCG
* * ** **
14545256 GAACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGAACCCCGACGAAGAAAA
256 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * ** * * *
14545321 ATATGGAACGAGCACATGCCCGAGCCCAGCATGTGCTACCCCAACCCTCAGTCCGATCTGATCTT
321 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTT
* * *
14545386 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGG
386 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** * **
14545451 CCAGAGGGGCGGGATGCGAAAGCCAGGGATCGGTCGGGTCCCCCTCTATGTGTTATCGATCCTGC
451 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * * * *
14545516 TGTCGCAACCCTCGGTCC-GATCTGATCTTAGATTGGGAATGAAATCCGTATGCCTGACCCAACC
516 TGCCACAACCCTCAGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * ** *
14545580 GATGAAACG-GACAGGCGGGCGGGCGGGCGGGCACTATGCTGGTAAGAGAAACGGGATGCGCAAG
580 GACGAAACGAG-CGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* **
14545644 CCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
643 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
14545709 TTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
708 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
14545774 ACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTC
773 ACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
14545839 GAAAGGAGTTTTGGCCCCAACCTTGGTAAACATGATC
838 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
14545876 CTTGTAATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * * *
14545941 ACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATTGCTACTGGCAACAAGCCTATAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
14546006 CTCAAATGCT-TCTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 CTCAAATGCTCT-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
**
14546070 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----C--CCCCCCGATCACCGGAAC
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCGATCGTCGGAAC
*
14546129 CCCAATGTCGCCGGTCAGGTTCT-C-------CT--G-CGATGGTGCCCC-AGCGAAGAAAAATA
260 CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATA
* * ** ** * *
14546182 TGACACCAGCACATGCCCGAGCCCAGCATGTATTGCCACAACCCTCGGTCCGGTCTGATCTTTGA
324 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGA
* * ** * *
14546247 CTGGGAAGTGAACTCCGTATGCCTAAGTCAACCCACGAGACGAGCGTGCAAGTGCTCAGCCGACC
389 CTGGGAA-TGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
14546312 A-AAGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCTCTTTGCGTGCTACCAATCCTGCTG
453 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
** * *
14546376 CTGCAACCCTC-GATCCAGTCTGATCTTAGGACTGGGAATGAACTCTGTATGCCTAAGCCTACCG
518 CCACAACCCTCAG-TCCAGTCTGATCTTA-GACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * * *
14546440 ACGAAAGGAGCGGGCGGGCGAGCGGGCGAGCACTACGTCGGCTAGACAGACGGGATGCACAAGCT
581 ACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
14546505 GTGGGA-CGATAGAGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTG-ATGCCAATACCATT
645 GT-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
14546568 TTTATGGCTTCTAAATTCATACAATGGTCCCTT-AGCCTTCACGTGAAGTTTCATGGC-AGACGA
709 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
14546631 CTCGTTTTCTATTTTTCATGATTTACGAAACTTTTTACGG-TC-AGGATTTTTTAAAATTTTTTT
774 CTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTC
* * *
14546694 GAAAGGATTTTTGGCCCCAAACCTGGTAGACGTGATC
838 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
14546731 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
14546796 ACCATTTGAAAAAAGTGTCACCATTTCAAACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
14546861 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAG
131 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
14546926 GGCCAAGTACCAACAACCATCGAACATCATGTGCGCTCACCCCCTGGCCCCCCGATCG-CTGGAA
196 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GGCCCCCCGATCGTC-GGAA
* * * * *
14546990 CCCAAATGCCGTCGGTCAGGTTCTCC-ATCGATGCTCCGACGATGGTGCTCCGATGAAGAAAAAT
259 CCCCAATGCCGCCGGTCAGGTTCTCCGGT-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
** *
14547054 GTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG-TCGCAACCCTCGGTCCGGTCCGATCTTA
323 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTA
* *
14547118 GACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACGTATGA
387 GACTGGGAATGAACTCCGTATGC-----------CT-AA----G--T--C-AA--C-AC--ACGA
* * * * * * *
14547183 AACTAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGTTC
426 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * *** * *
14547248 CCCCT-TGCGTGCTGCCAATCTTACTGCTGTAACCCTCGGTCCAGTCTAATCTTAGACTGGGAAT
491 CCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAAT
* * *
14547312 GAACTCCGTATGCCTAAGCCAACCGACGAAACGA-CTGGGTGGGCGGGCGAGCGGGCATTACGCC
556 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGG-CGGCGGGCGGGCGGGCACTACGCC
* * *
14547376 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGACATGGTGGTAGGTGGGTTTAGGCACATCTT
619 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
**
14547441 CATATTTCTG--TGGGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
684 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
14547504 CACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGG
749 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * *
14547569 TTCGAGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGACCCAAACTTGGTAGACGTGATA
814 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
14547630 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTT
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* **
14547695 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTGTTGGCAGCAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
14547760 CTCAAATCCTC-TTACAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAA
131 CTCAAATGCTCTTTA-AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
14547824 GGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA--CGC-GCCCCCAGCGAGCTATCAT
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCC--C--G--ATCGT
* * ** **
14547886 CGGAACCCCAATGCCGTCGGGCAGGTTCTCCGGCAATGCTCCGATTATGGTGCCCCGACGAAGAA
254 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * * * *
14547951 AAATGCGGCACCACCACATGTCCGAGCCCAGCATGTGCTG-TCGTAACCCTCAGTCCGGTCTGAT
319 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGAT
* *
14548015 CTTAGACTAGGAACGAACTCCGTATGC
383 CTTAGACTGGGAATGAACTCCGTATGC
14548042 TTAGACTGGC
Statistics
Matches: 5624, Mismatches: 711, Indels: 375
0.84 0.11 0.06
Matches are distributed among these distances:
854 1 0.00
855 270 0.05
856 289 0.05
857 516 0.09
858 203 0.04
859 222 0.04
860 128 0.02
861 7 0.00
862 39 0.01
863 463 0.08
864 22 0.00
865 178 0.03
866 7 0.00
867 4 0.00
868 1 0.00
869 38 0.01
870 3 0.00
871 3 0.00
872 18 0.00
873 86 0.02
874 2 0.00
875 1 0.00
876 794 0.14
877 230 0.04
878 237 0.04
879 4 0.00
880 2 0.00
881 4 0.00
882 6 0.00
883 1 0.00
884 8 0.00
885 31 0.01
886 274 0.05
887 11 0.00
888 1 0.00
889 3 0.00
890 10 0.00
891 560 0.10
892 5 0.00
893 2 0.00
894 1 0.00
895 7 0.00
896 47 0.01
897 151 0.03
898 113 0.02
899 301 0.05
900 5 0.00
901 140 0.02
902 124 0.02
903 51 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCGATCGTCGGAACC
CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
CAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATC
Found at i:14547143 original size:26 final size:26
Alignment explanation
Indices: 14547114--14547166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14547104 CCGGTCCGAT
14547114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14547140 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14547166 C
1 C
14547167 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14548328 original size:310 final size:310
Alignment explanation
Indices: 14547750--14548371 Score: 865
Period size: 310 Copynumber: 2.0 Consensus size: 310
14547740 TGGCAGCAAA
*
14547750 CCTGTAAAATCTCAAATCCTCTTACAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
1 CCTGTAAAATCTCAAATCCTCTTACAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
14547815 CAAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACGCGCCCCCAGCGAGC
66 CAAATATAAGGGCCAAGTACCAACACCCACCGCACATCATGTGCGCACACGCGCCCCCAGCGACC
* * **
14547880 TATCATCGGAACCCCAATGCCGTCGGGCAGGTTCTCCGGCAATGCTCCGATTATGGTGCCCCGAC
131 TATCATCGGAACCCCAATGCCGCCGGGCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGAC
* * * *
14547945 GAAGAAAAATGCGGCACCACCACATGTCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCGGT
196 GAAGAAAAATGCGACACCACCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCGAT
*
14548010 CTGATCTTAGACTAGGAACGAACTCCGTATGCTTAGACTGGCAATGAACT
261 CCGATCTTAGACTAGGAACGAACTCCGTATGCTTAGACTGGCAATGAACT
* * *
14548060 CCTGTAAAATCTCAAATGCTCTTTA-AGGGGGTGTGACTTTTTGAGGTTTGATGAGGGATAGGGG
1 CCTGTAAAATCTCAAATCCTC-TTACAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
14548124 GCCAATATAAGGGCCAAGTACCAACACCCACCGCACATCATGTGCGCACAC-C-CCTCCGGC-CC
65 GCAAATATAAGGGCCAAGTACCAACACCCACCGCACATCATGTGCGCACACGCGCCCCCAGCGAC
* * * * * *
14548186 CTTCGATCGTCGGAACCCTAATGTCGCCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCC
130 C-T--ATCATCGGAACCCCAATGCCGCCGGGCAGGTTCTCCGACAATGCTCCGACGATGGTGCCC
* * *
14548251 CGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
192 CGACGAAGAAAAATGCGACACCACCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTC
* * * * *
14548316 TGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
257 CGATCCGATCTTAGACTAGGAACGAACTCCGTATGCTTAGACTGGCAATGAACT
14548370 CC
1 CC
14548372 GTATGCCTAA
Statistics
Matches: 273, Mismatches: 35, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
307 1 0.00
308 7 0.03
309 1 0.00
310 261 0.96
311 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (310 bp):
CCTGTAAAATCTCAAATCCTCTTACAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGG
CAAATATAAGGGCCAAGTACCAACACCCACCGCACATCATGTGCGCACACGCGCCCCCAGCGACC
TATCATCGGAACCCCAATGCCGCCGGGCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGAC
GAAGAAAAATGCGACACCACCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCGAT
CCGATCTTAGACTAGGAACGAACTCCGTATGCTTAGACTGGCAATGAACT
Found at i:14548354 original size:26 final size:26
Alignment explanation
Indices: 14548325--14548377 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14548315 CTGATCCGAT
*
14548325 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14548351 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14548377 C
1 C
14548378 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14551118 original size:26 final size:26
Alignment explanation
Indices: 14551082--14551134 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14551072 CTGGTCCAAT
*
14551082 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14551108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14551134 C
1 C
14551135 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14556138 original size:875 final size:871
Alignment explanation
Indices: 14553386--14558510 Score: 6076
Period size: 872 Copynumber: 5.8 Consensus size: 871
14553376 GTTCGATCCG
* * *
14553386 ATCTTCATA-TTCTGCGTGCCAATGCCATTTGTTAGGGCTTGTAAATTCATACAATGGTCTCATA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTT-TTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * * * *
14553450 AGTCTTCACGTAAAGTTTCACGGTTAAGACGACTCGTTTTCTGTTTTTCATGATTTTTTAAACTT
65 AGCCTTCACGTGAAGTTTCATGG-CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
14553515 TTTGCGGGTTCGAGATTTTTTAAAA-TTTTTCGGAAGG-ATTTTTGGCCCCAAACTTGCTAGACG
129 TTTAC-GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGCA-TTTTGGCCCCAAACTTGGTAGACG
*
14553578 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGAT
192 TGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
14553643 TTTGTTGACCTTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
255 TTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
14553708 GTAAAATCTCAAATGCTTTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCA
319 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
14553772 ATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGAGCCCCCCGA
384 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGA-CCCCCCGA
* * * * * * * * * *
14553836 TTG-TCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACGAATGCTCTGGCGATGGTGCCTCGAC
446 TCGCT-GGAATCCCAATGCCACCGATCAGGTTCTCCGACG-ATGCTCCGACGATGGTGCCCCGAT
* * * * * *
14553900 GAAGAAAAATACGGGACTAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGT
509 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCTCAATCCTTGGTCCGAT
* * * *
14553965 CCGATCTTAGAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGC-GGTG
574 CTGATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * ** * * ** *
14554029 CTCAGCCGGCCAGAGGGACGAAAAGTGCAAGTAGGGGATCGATCGAGTCCACTCTATGTGCTGCT
638 CTCAGCCGGCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGATCGGGTCCCCTCTGCGTGCTGCC
* * * * * **
14554094 GATCCTATTGCTGCAGCCCTCGGTCCGGTCTGATCTTAGACTGGGAAATGAACTCCGTATGCCTA
702 GATCCTACTACTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGG-AATGAACTCCGTATGCCTA
** * * * *
14554159 AGCCAACTAACGAAACGA----TCGGGCA-------GGCACTACGCCAGCCAGAGAGACGGGAAG
766 AGCCAACCGACGAAACGAGCGGACGGGCAGGCGGCGGGCACTACGCGA-CCAGAGAGGCGGGATG
* * * *
14554213 TGCGAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGGCAC
830 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA-GGCAC
* *
14554256 ATGTTCATATTTCTGTGTGCCAATGCCATTTTTAT-GCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-A
* * * * *
14554320 AGCCTTCACGCGAAGTTTAATTTGCAAGATGACTCCTTTT-TATTTTTCACGATTTTTTGAAACT
65 AGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACT
* * *
14554384 TTTTACGATTCGGGATTTTTTAAAA-TTTTTCGGACATG-ACTTTTGGCCCCAAACTTGGTTAGA
128 TTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGCA-TTTTGGCCCCAAACTTGG-TAGA
*
14554447 CGTCATCCTTGTATTTTT-TGTGGCATGCACAGAAAAATTCAAGCTAAAAACTCGAAGTGTACAA
190 CGTGATCCTTGTATTTTTGT-TGGCATGCACA-AAAAATTC-AGCTAAAAACTCGAAGTGTACAA
14554511 GA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
252 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14554575 CTGTAAAATCTCAAATGCTCTTTAAGGGGAGT-T-ACTTCTCGAGGTTTGATGAGGGATAGGGGG
317 CTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
14554638 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCA
381 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCG
** * * ** ** * * *
14554703 ATCAATGGAA-CCCAATGCCGCCGATCAGGTTTGTCCGGTGATGCTCCGGTGATAGTGACCCGAC
445 ATCGCTGGAATCCCAATGCCACCGATCAGG-TTCTCCGACGATGCTCCGACGATGGTGCCCCGAT
* * *
14554767 GAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCATGTG-TGCCACAACCCTCGGTTCGGT
509 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCTCAA---TC-CTT-GGT
**
14554831 CCGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCTATATGCCTAAGTC
569 CCGA---T---C------TG-A-------T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
14554896 AACCGACGAAACGAGCGTGTGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATC
613 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATC
* * * * * * *
14554961 GGTCAGGTCCCCCTCTGCGTGTTGCCGATCCTACCACTGCAACACTGAATCTGGTCCAATCTTAG
677 GATCGGGT-CCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCAGTCTGGTCCAATCTTAG
14555026 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-GC---CGGGC--G-GGCGGGCA
741 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCAGGCGGCGGGCA
* *
14555084 CTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGT
806 CTACG-CGACCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
14555149 AC
870 AC
*
14555151 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
14555216 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
** * *
14555281 TTTGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGCATTTTGGCGCCAAACTTGGTAGACGTGAT
131 TACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGCATTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
14555346 CCTTGTATTTTTGTTGGCATGTATAAAAAATTCAACTAAAAACTCGAAGTGTACAAGACTTTGTG
196 CCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
14555411 -CCAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACTTGTAAAA
261 ACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
14555475 TCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
325 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
** * *
14555540 GGGCCAAACACC-GACACCCATTGCACATTATGTGCGCACACCCCCCGACCCCCCCGATCGCTGG
390 GGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACACCCCCCGA-CCCCCCGATCGCTGG
* ** *
14555604 AATCTCAATGCCATAGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATTAAGAAAAA
453 AATCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAA
* * *
14555669 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTTCAATCCTTGGTCCGATTTGATCTTA
518 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCTCAATCCTTGGTCCGATCTGATCTTA
* * ** *
14555734 GACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAACGTGCGAACGCTCAGTCGGC
583 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
14555799 CAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTTCCCCTCTGCGTGCTGGCGATCCTGCT
648 CAGAGGGGC-GGATGCGCAAGCCGGGGATCGATCGGG-TCCCCTCTGCGTGCTGCCGATCCTACT
* * * * * *
14555864 GCCGCGACCCTCAGTCTAGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCAAAGCCAACCGA
711 ACTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
14555929 TGAAACGAGCGGGCGGGCAGGCGGCGGGCACTACGTCGACCAAAGAGGCGGGATGCGTAAGTCAT
776 CGAAACGAGCGGACGGGCAGGCGGCGGGCACTACG-CGACCAGAGAGGCGGGATGCGCAAGCCAT
*
14555994 GGATCCATAGGGTGGTAGGTGGGTTTAGGCAC
840 GGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
14556026 ATCTTCATGTTTCTGTGTGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* **
14556091 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCCAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* *
14556156 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGAT
131 TACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGCATTTTGGCCCCAAACTTGGTAGACGTGAT
*
14556221 CCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
**
14556286 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAA
260 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
14556351 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGCATAGGGGGCCAATATAA
325 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
14556416 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCCCACA-CCCCCG--CCCCCGATCGCTGGAA
390 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGCTGGAA
* * * *
14556478 TCCTAATGCCATCAATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-AGTGAAGAAAAAT
455 TCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-TGAAGAAAAAT
* * * * * * * *
14556542 GCTGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTGGGTCCGATCCGCTCTTAG
519 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCTCAATCCTTGGTCCGATCTGATCTTAG
* * * * *
14556607 ACTGGGAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGTGTGGGC-ATCCAGCTGGC
584 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCGGC
* * *
14556671 CAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCTCTGCGTGCTGCCGATCCTGCTA
648 CAGAGGGGC-GGATGCGCAAGCCGGGGATCGATCGGGTCCCCTCTGCGTGCTGCCGATCCTACTA
*** *** ** * * *
14556736 CCATAAAAATCAGTCTGGTCTGATCCTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCAAC
712 CTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * *
14556801 AAAACGAGCGGACGGGCGGGCGGGTGGGCACGACGCCGTCCAGAGAGGCGGGAAGTGCAAGCCAT
777 GAAACGAGCGGACGGGCAGGC-GGCGGGCACTACG-CGACCAGAGAGGCGGGATGCGCAAGCCAT
* * *
14556866 GGAACGATAGGGTGGTAGGTGGGTTTGGGTAC
840 GGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
14556898 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
14556963 GCCTTCACGTTG-AGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACAATTTTTGAAACTTT
66 GCCTTCACG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
14557027 CTACGGTTCGGAATTTTTTAAAATTTTTTTCG-AAGGCGTTTTGGCCCCGAACTTGGTAGACATG
130 TTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGCATTTTGGCCCCAAACTTGGTAGACGTG
* * *
14557091 ATCGTTGTATTTTTGTTGGCATGGACAACAAAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTT
194 ATCCTTGTATTTTTGTTGGCATGCACAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
14557156 GTGACCATTTGAAAAAAATGTCCCCATTTCATACACTTTAATGGCTACTGACAGCAAACCTATAA
258 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
14557221 AATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
323 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
14557286 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCG-TCG
388 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGCT-G
* * * *
14557350 GAACCCCAATGTCGC-CCG-TCAAGTTCTCCGGCGATGCTCCGACGATAGTG-CCCGATGAAGAA
452 GAATCCCAATG-C-CACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAA
* * * * * * *
14557412 AAATGCAGCACCAGCACATTCTCGAGCCAAGCATGTGCTGCCGCAACCCTCAGTCCTATCCGATC
515 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT---G----CCTCAATCCT-T--GGTC
* *
14557477 TTAGACTGGGAATTATCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACACA
570 -----C---G----ATCT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
14557542 CGAAAGGAGCGTGCGGGCGCTCAGCAGGCCAAAAGGGCGAGACGCACAAGCCGGGGATCAATCGG
619 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGATCGG
* ** * *
14557607 GTCCCCATCTGTGTGCTATCGATCCTACTACTGCAACCCTCAGTCTCGTCCCATCTTAGACTGGG
683 GTCCCC-TCTGCGTGCTGCCGATCCTACTACTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGG
* * * *
14557672 AATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGTGGACGGGTGGGCTC
747 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC---AGG-C-GGCGGGCAC
* ** * *
14557737 TACGCCAGCCAGAGAGGCAAGATGTGCAAGCCATGGATAGATAGGGTGGTAGGTGGGTTTAGGCA
807 TACGCGA-CCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
14557802 C
871 C
* * *
14557803 ATCTTCGTATTTCTACGTGCCAATGCCATTTTTATGGCTTGGAAATTCATA-AATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* **
14557867 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * ** *
14557932 TACGGTTTGGAATTTTTTAAAATTTTTTTGAAAGGCATTTTGGTGCCAAACTTGGTAGCCGTGAT
131 TACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGCATTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
14557997 CCTTGTATTTTTGTTGGCATGTATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGACTTTGT
196 CCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
14558062 GACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAA
260 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
14558127 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
325 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
14558192 GGGCCAAGTACTAGCACCCATCACACATCATCGTGCGCAAACCCCCCGGCCCCCCCAATCGCCTG
390 GGGCCAAGTACCAGCACCCATCGCACATCAT-GTGCGCACACCCCCC-GACCCCCCGATCG-CTG
* * *
14558257 GAATCCCAATGCCATCGATCAGGTTTCTCTGACGATGCTTCGACGATTGGTGCCCCGATGGAAGA
452 GAATCCCAATGCCACCGATCAGG-TTCTCCGACGATGCTCCGACGA-TGGTGCCCCGAT-GAAGA
* * * * * *
14558322 AAAATACGACACCCAGCACATGCCACTAG-CCAGTATGTGCTGCTTCAAT-CTCGGTCCGGTCTG
514 AAAATACGGCA-CCAGCACATGCC-CGAGCCCAGCATGTGCTGCCTCAATCCTTGGTCCGATCTG
* *
14558385 ATCTTAGACTGGGAATGAAACTCCGTATGCCTAAGTCAACCCCACGAAACGAACGTGCGGGCACT
577 ATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGTCAA-CCCACGAAACGAGCGTGCGGGCGCT
* * *
14558450 TAGCCGG-CAGA-GGACGGATTGCACAAGCC-GGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCG
640 CAGCCGGCCAGAGGGGCGGA-TGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTGCGTGCTGCCG
14558511 TAACCCTTGT
Statistics
Matches: 3680, Mismatches: 434, Indels: 269
0.84 0.10 0.06
Matches are distributed among these distances:
866 8 0.00
867 76 0.02
868 216 0.06
869 169 0.05
870 133 0.04
871 178 0.05
872 666 0.18
873 19 0.01
874 47 0.01
875 333 0.09
876 190 0.05
877 8 0.00
881 7 0.00
883 18 0.00
884 16 0.00
885 28 0.01
886 26 0.01
887 27 0.01
889 11 0.00
890 2 0.00
891 74 0.02
892 187 0.05
893 229 0.06
894 91 0.02
895 74 0.02
896 88 0.02
897 2 0.00
898 1 0.00
899 2 0.00
900 92 0.03
901 91 0.02
903 9 0.00
904 334 0.09
905 132 0.04
906 14 0.00
907 15 0.00
908 20 0.01
909 5 0.00
910 6 0.00
911 13 0.00
912 20 0.01
913 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGCATTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGCTGGAAT
CCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATAC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCTCAATCCTTGGTCCGATCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTCTGCGTGCTGCCGATCCTACTACTGC
AACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGACGGGCAGGCGGCGGGCACTACGCGACCAGAGAGGCGGGATGCGCAAGCCATGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCAC
Found at i:14557505 original size:26 final size:26
Alignment explanation
Indices: 14557476--14557528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14557466 CCTATCCGAT
* *
14557476 CTTAGACTGGGAATTATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14557502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14557528 C
1 C
14557529 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.