Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 79 of 131
Found at i:14559125 original size:26 final size:26
Alignment explanation
Indices: 14559096--14559146 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14559086 CCGGTTTGAT
* *
14559096 CTTAGATTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14559122 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14559147 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14559337 original size:4 final size:4
Alignment explanation
Indices: 14559328--14559361 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
14559318 GACGAAAAGA
* *
14559328 GCGG GCGG GCGG GCAG GCGG GTGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
14559362 ACTACGCCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.03, C:0.24, G:0.71, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:14560613 original size:26 final size:26
Alignment explanation
Indices: 14560561--14560613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14560551 CCAGTCTGAT
*
14560561 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
14560587 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
14560613 C
1 C
14560614 CTAATTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14562197 original size:26 final size:26
Alignment explanation
Indices: 14562168--14562220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14562158 CCGGTCCAAT
*
14562168 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14562194 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14562220 C
1 C
14562221 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14563103 original size:26 final size:26
Alignment explanation
Indices: 14563053--14563105 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14563043 CCAGTCCAAT
* * *
14563053 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14563079 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14563105 C
1 C
14563106 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14563957 original size:12 final size:13
Alignment explanation
Indices: 14563933--14564056 Score: 77
Period size: 12 Copynumber: 9.5 Consensus size: 13
14563923 CCTTCTTTTG
*
14563933 TATT-TTATGTAT
1 TATTATTATTTAT
14563945 T-TTATTATTTAT
1 TATTATTATTTAT
14563957 TATTATTA-TTAT
1 TATTATTATTTAT
14563969 TATTATTA-TTAT
1 TATTATTATTTAT
14563981 TATTATGTATATCT-T
1 TATTAT-TAT-T-TAT
14563996 TATT-TT-TTT-T
1 TATTATTATTTAT
*
14564006 CTATTAATATTTA-
1 -TATTATTATTTAT
14564019 TATGTAATTTATTTAT
1 TAT-T-A-TTATTTAT
14564035 ATAGTTATGTATTTAT
1 -TA-TTAT-TATTTAT
14564051 TATTAT
1 TATTAT
14564057 ATTATAATTT
Statistics
Matches: 92, Mismatches: 3, Indels: 32
0.72 0.02 0.25
Matches are distributed among these distances:
10 2 0.02
11 7 0.08
12 36 0.39
13 13 0.14
14 6 0.07
15 15 0.16
16 9 0.10
17 3 0.03
18 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (13 bp):
TATTATTATTTAT
Found at i:14563959 original size:3 final size:3
Alignment explanation
Indices: 14563933--14563986 Score: 76
Period size: 3 Copynumber: 18.0 Consensus size: 3
14563923 CCTTCTTTTG
14563933 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
14563978 TAT TAT TAT
1 TAT TAT TAT
14563987 GTATATCTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.09
3 37 0.79
4 6 0.13
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:14564031 original size:21 final size:21
Alignment explanation
Indices: 14564007--14564062 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
14563997 ATTTTTTTTC
14564007 TATTAATAT-TTATATGTAATT
1 TATTAATATATTATATGT-ATT
* *
14564028 TATTTATATAGT-TATGTATT
1 TATTAATATATTATATGTATT
*
14564048 TATTATTATATTATA
1 TATTAATATATTATA
14564063 ATTTTTTTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 12 0.43
21 15 0.54
22 1 0.04
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (21 bp):
TATTAATATATTATATGTATT
Found at i:14564033 original size:15 final size:16
Alignment explanation
Indices: 14564013--14564050 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14564003 TTTCTATTAA
*
14564013 TATTTATAT-GTAATT
1 TATTTATATAGTAATG
*
14564028 TATTTATATAGTTATG
1 TATTTATATAGTAATG
14564044 TATTTAT
1 TATTTAT
14564051 TATTATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (16 bp):
TATTTATATAGTAATG
Found at i:14564926 original size:10 final size:10
Alignment explanation
Indices: 14564911--14564935 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14564901 AGCCCCCCTT
14564911 CGAGCCAAGC
1 CGAGCCAAGC
14564921 CGAGCCAAGC
1 CGAGCCAAGC
14564931 CGAGC
1 CGAGC
14564936 TTCCAATGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.40, G:0.32, T:0.00
Consensus pattern (10 bp):
CGAGCCAAGC
Found at i:14565103 original size:17 final size:16
Alignment explanation
Indices: 14565069--14565108 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
14565059 TTAGATTAGG
*
14565069 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
14565085 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
14565102 TTTATTT
1 TTTATTT
14565109 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:14565146 original size:23 final size:22
Alignment explanation
Indices: 14565097--14565146 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
14565087 TATCTTAATT
*
14565097 TTATT-TTTATTTTTGTTTTAC
1 TTATTCTTTATTTTTATTTTAC
14565118 TT-TTCTTTATTTTTCTATTTTA-
1 TTATTCTTTA-TTTT-TATTTTAC
14565140 TTATTCT
1 TTATTCT
14565147 ATTTTCTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 2 0.08
21 6 0.25
22 6 0.25
23 10 0.42
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.76
Consensus pattern (22 bp):
TTATTCTTTATTTTTATTTTAC
Found at i:14565334 original size:58 final size:56
Alignment explanation
Indices: 14565179--14565505 Score: 451
Period size: 58 Copynumber: 5.7 Consensus size: 56
14565169 AATTTCCAAA
14565179 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*** * *
14565236 AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTC
1 AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
* * *
14565294 TAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCCTAAAAATAAATTTTC
1 AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
14565351 AAAAAAACATTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 -AAAAAATA-TTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
14565410 AAAAAAAACATTTTGGGGAAAAGTTGAATGTATCAATTTTCCTTAAAAATAAA-TTTC
1 --AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
14565467 AAAAAATA-TTTTGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
14565506 CTGCACAAAA
Statistics
Matches: 241, Mismatches: 23, Indels: 15
0.86 0.08 0.05
Matches are distributed among these distances:
54 29 0.12
55 7 0.03
56 1 0.00
57 54 0.22
58 90 0.37
59 51 0.21
60 9 0.04
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (56 bp):
AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:14565401 original size:117 final size:113
Alignment explanation
Indices: 14565179--14565505 Score: 469
Period size: 117 Copynumber: 2.9 Consensus size: 113
14565169 AATTTCCAAA
**
14565179 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAGGG
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA-AT
* *
14565244 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTC
65 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* * *
14565294 TAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCCTAAAAATAAATTTTCAAAAAAAC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC--AAAAA-
*
14565359 ATTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
63 ATTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
14565410 AAAAAAAACATTTTGGGGAAAAGTTGAATGTATCAATTTTCCTTAAAAATAAA-TTTCAAAAAAT
1 AAAAAATA-TTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT
*
14565474 ATTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
65 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
14565506 CTGCACAAAA
Statistics
Matches: 192, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
112 27 0.14
113 6 0.03
114 5 0.03
115 54 0.28
116 17 0.09
117 83 0.43
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (113 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAATT
TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:14569391 original size:20 final size:20
Alignment explanation
Indices: 14569368--14569406 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14569358 ATCAACAACG
*
14569368 GATGAAAAATGAAAAAAGAT
1 GATGAAAAAAGAAAAAAGAT
*
14569388 GATGAAAAAAGAAAGAAGA
1 GATGAAAAAAGAAAAAAGA
14569407 AAAAAACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.10
Consensus pattern (20 bp):
GATGAAAAAAGAAAAAAGAT
Found at i:14569409 original size:13 final size:12
Alignment explanation
Indices: 14569393--14569433 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
14569383 AAGATGATGA
14569393 AAAAAGAAAGAAG
1 AAAAA-AAAGAAG
*
14569406 AAAAAAACAAAAG
1 AAAAAAA-AGAAG
14569419 AAAAAAAAGAAG
1 AAAAAAAAGAAG
14569431 AAA
1 AAA
14569434 GAAATGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAG
Found at i:14569434 original size:16 final size:15
Alignment explanation
Indices: 14569392--14569437 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
14569382 AAAGATGATG
14569392 AAAAAAGAAAGAAGAA
1 AAAAAAGAAAGAA-AA
14569408 AAAAACA-AAAGAAAA
1 AAAAA-AGAAAGAAAA
14569423 AAAAGAAGAAAGAAA
1 AAAA-AAGAAAGAAA
14569438 TGAGAAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 7 0.26
16 19 0.70
17 1 0.04
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAGAAAA
Found at i:14569445 original size:28 final size:26
Alignment explanation
Indices: 14569393--14569454 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
14569383 AAGATGATGA
14569393 AAAAAGAAAGAAGAAAAAAACAAAA-G
1 AAAAA-AAAGAAGAAAAAAACAAAATG
*
14569419 AAAAAAAAGAAGAAAGAAATGAGAAAATG
1 AAAAAAAAGAAGAAA-AAA--ACAAAATG
14569448 AAAAAAA
1 AAAAAAA
14569455 GAGATTCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
25 10 0.32
26 8 0.26
28 5 0.16
29 8 0.26
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.03
Consensus pattern (26 bp):
AAAAAAAAGAAGAAAAAAACAAAATG
Found at i:14570763 original size:41 final size:41
Alignment explanation
Indices: 14570665--14570764 Score: 157
Period size: 41 Copynumber: 2.4 Consensus size: 41
14570655 ATGATTGTCA
* * *
14570665 AGGAGCAATTTACTTTCCAAAGTTCTGTTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTTCTGGTGCCTCTCTTTAG
14570706 AGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTCTTTAG
1 AGGAGCAATTTACTTTTCAAAGTTC-TGGTGCCTCTCTTTAG
14570747 AGGAGCAATTTACTTTTC
1 AGGAGCAATTTACTTTTC
14570765 CAGCAATTTA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 2 0.04
41 53 0.96
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTTCTGGTGCCTCTCTTTAG
Found at i:14570771 original size:16 final size:16
Alignment explanation
Indices: 14570750--14570782 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14570740 TCTTTAGAGG
14570750 AGCAATTTACTTTTCC
1 AGCAATTTACTTTTCC
14570766 AGCAATTTACTTTTCC
1 AGCAATTTACTTTTCC
14570782 A
1 A
14570783 AAGTCGTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.42
Consensus pattern (16 bp):
AGCAATTTACTTTTCC
Found at i:14570821 original size:57 final size:57
Alignment explanation
Indices: 14570709--14570823 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 57
14570699 TGTTTAGAGG
*
14570709 AGCAATTTACTTTTCAAAGTCGTGGTGCCTCTCTTTAGAGGAGCAATTTACTTTTCC
1 AGCAATTTACTTTTCAAAGTCGTGGTGCCTCTCTTTAGAAGAGCAATTTACTTTTCC
*
14570766 AGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTCTTTAGAAGAGCATTTTA-TTTTCC
1 AGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTCTTTAGAAGAGCAATTTACTTTTCC
14570823 A
1 A
14570824 AAGTTGTGGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
57 21 0.38
58 34 0.62
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (57 bp):
AGCAATTTACTTTTCAAAGTCGTGGTGCCTCTCTTTAGAAGAGCAATTTACTTTTCC
Found at i:14570833 original size:41 final size:41
Alignment explanation
Indices: 14570766--14570930 Score: 231
Period size: 41 Copynumber: 4.0 Consensus size: 41
14570756 TTACTTTTCC
* *
14570766 AGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTCTTTAGAAG
1 AGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
* * *
14570808 AGCATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTGGAGG
1 AGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
* * *
14570849 AGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTGTAGAGG
1 AGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
* *
14570890 AGCAATTTATTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGG
1 AGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
14570931 GGCTTTGGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
41 99 0.93
42 8 0.07
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (41 bp):
AGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
Found at i:14570838 original size:99 final size:98
Alignment explanation
Indices: 14570668--14570861 Score: 284
Period size: 99 Copynumber: 2.0 Consensus size: 98
14570658 ATTGTCAAGG
* * *
14570668 AGCAATTTACTTTCCAAAGTTCTGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTG
1 AGCAATTTACTTTCCAAAGTTCTGGTGCCTCTCTTTAGAAGAGCAATTTACTTTTCAAAGTCGTG
14570733 GTGCCTCTCTTTAGAGGAGCAATTTACTTTTCC
66 GTGCCTCTCTTTAGAGGAGCAATTTACTTTTCC
* *
14570766 AGCAATTTACTTTTCCAAAG-TCGTGGTGCCTCTCTTTAGAAGAGCATTTTA-TTTTCCAAAGTT
1 AGCAATTTAC-TTTCCAAAGTTC-TGGTGCCTCTCTTTAGAAGAGCAATTTACTTTT-CAAAGTC
* *
14570829 GTGGTGCCTCTGTTTGGAGGAGCAATTTACTTT
63 GTGGTGCCTCTCTTTAGAGGAGCAATTTACTTT
14570862 CAAAAGTCGT
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
98 16 0.19
99 70 0.81
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (98 bp):
AGCAATTTACTTTCCAAAGTTCTGGTGCCTCTCTTTAGAAGAGCAATTTACTTTTCAAAGTCGTG
GTGCCTCTCTTTAGAGGAGCAATTTACTTTTCC
Found at i:14570953 original size:1 final size:1
Alignment explanation
Indices: 14570942--14571001 Score: 57
Period size: 1 Copynumber: 60.0 Consensus size: 1
14570932 GCTTTGGTCG
* * * * * * *
14570942 AAAACAAAAAAAAAACAAAAAAACAAAAAAACAACAAAAAAAACAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14571002 TGACAATGTT
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14570958 original size:11 final size:10
Alignment explanation
Indices: 14570942--14571001 Score: 88
Period size: 10 Copynumber: 6.1 Consensus size: 10
14570932 GCTTTGGTCG
14570942 AAAACAAAAA
1 AAAACAAAAA
*
14570952 AAAA-ACAAA
1 AAAACAAAAA
14570961 AAAACAAAAA
1 AAAACAAAAA
14570971 AACAAC-AAAA
1 AA-AACAAAAA
14570981 AAAACAAAAA
1 AAAACAAAAA
14570991 AAAACAAAAA
1 AAAACAAAAA
14571001 A
1 A
14571002 TGACAATGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 11 0.24
10 31 0.69
11 3 0.07
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAACAAAAA
Found at i:14570961 original size:8 final size:8
Alignment explanation
Indices: 14570950--14571001 Score: 72
Period size: 8 Copynumber: 6.8 Consensus size: 8
14570940 CGAAAACAAA
14570950 AAAAAAAC
1 AAAAAAAC
14570958 AAAAAAAC
1 AAAAAAAC
14570966 AAAAAAAC
1 AAAAAAAC
*
14570974 AACAAAA-
1 AAAAAAAC
*
14570981 AAAACAA-
1 AAAAAAAC
14570988 AAAAAAAC
1 AAAAAAAC
14570996 AAAAAA
1 AAAAAA
14571002 TGACAATGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
7 11 0.28
8 28 0.72
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:14570966 original size:19 final size:19
Alignment explanation
Indices: 14570942--14571001 Score: 95
Period size: 19 Copynumber: 3.2 Consensus size: 19
14570932 GCTTTGGTCG
14570942 AAAACAAAAAAAAAACAAA
1 AAAACAAAAAAAAAACAAA
*
14570961 AAAACAAAAAAACAACAAA
1 AAAACAAAAAAAAAACAAA
14570980 AAAA-ACAAAAAAAAACAAA
1 AAAACA-AAAAAAAAACAAA
14570999 AAA
1 AAA
14571002 TGACAATGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 1 0.03
19 37 0.97
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAACAAAAAAAAAACAAA
Found at i:14570980 original size:30 final size:30
Alignment explanation
Indices: 14570944--14571001 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
14570934 TTTGGTCGAA
14570944 AACAAAAAAAA-AACAAAAAAACAAAAAAAC
1 AACAAAAAAAACAA-AAAAAAACAAAAAAAC
14570974 AACAAAAAAAACAAAAAAAAACAAAAAA
1 AACAAAAAAAACAAAAAAAAACAAAAAA
14571002 TGACAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (30 bp):
AACAAAAAAAACAAAAAAAAACAAAAAAAC
Found at i:14571224 original size:16 final size:17
Alignment explanation
Indices: 14571205--14571256 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 17
14571195 TCTTTTGTAT
14571205 TTTATGTATT-TTATTA
1 TTTATGTATTATTATTA
14571221 TTTAT-TATTATTATTA
1 TTTATGTATTATTATTA
14571237 -TTATGTA-TATCT-TTA
1 TTTATGTATTAT-TATTA
14571252 TTTAT
1 TTTAT
14571257 TTTTTTTCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
15 14 0.44
16 18 0.56
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (17 bp):
TTTATGTATTATTATTA
Found at i:14571315 original size:20 final size:18
Alignment explanation
Indices: 14571281--14571324 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
14571271 TATTTATATG
14571281 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
14571300 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
14571319 TAATTT
1 TAATTT
14571325 TTTTTCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:14571933 original size:20 final size:20
Alignment explanation
Indices: 14571904--14571955 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
14571894 TCTGGCGAAC
*
14571904 TTCCGGTGAAAAAACCCAGA
1 TTCCGATGAAAAAACCCAGA
14571924 TTCCGATGAAAAAACCCAGA
1 TTCCGATGAAAAAACCCAGA
* *
14571944 ATCCGACGAAAA
1 TTCCGATGAAAA
14571956 TCTCACCGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.25, G:0.17, T:0.13
Consensus pattern (20 bp):
TTCCGATGAAAAAACCCAGA
Found at i:14572385 original size:17 final size:16
Alignment explanation
Indices: 14572351--14572390 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
14572341 TTAGATTAGG
*
14572351 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
14572367 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
14572384 TTTATTT
1 TTTATTT
14572391 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:14572397 original size:17 final size:17
Alignment explanation
Indices: 14572377--14572424 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
14572367 TTTATCTTAA
14572377 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
14572393 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
14572411 TTTCTATTTTTATT
1 TTT-TATTTTTATT
14572425 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:14572424 original size:14 final size:14
Alignment explanation
Indices: 14572377--14572434 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
14572367 TTTATCTTAA
14572377 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
14572389 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
14572403 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
14572418 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
14572432 TTT
1 TTT
14572435 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:14572439 original size:17 final size:17
Alignment explanation
Indices: 14572400--14572439 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
14572390 TTTGTTTTAC
*
14572400 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
14572417 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
14572431 TTTTCTTTA
1 TTTTCTTTA
14572440 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:14572537 original size:57 final size:57
Alignment explanation
Indices: 14572461--14572846 Score: 553
Period size: 57 Copynumber: 6.7 Consensus size: 57
14572451 AAATTTCCAA
* *
14572461 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*** * * *
14572518 AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC
* * * *
14572577 AAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCCTAAAAATAAATTTTC
1 AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
14572634 AAACAAACATTTTTGGGGAAAAGTT-AAAGTTTCAATTTTCCTTAAAACTAAATTTTC
1 AAA-AAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
14572691 AAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 --AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
14572750 AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAA-TTTC
1 AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
14572806 AAAAAA-ATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAACAT-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
14572847 CTACACAAAC
Statistics
Matches: 296, Mismatches: 26, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
55 2 0.01
56 41 0.14
57 132 0.45
58 40 0.14
59 81 0.27
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (57 bp):
AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:14572597 original size:116 final size:115
Alignment explanation
Indices: 14572444--14572846 Score: 609
Period size: 116 Copynumber: 3.5 Consensus size: 115
14572434 TCTTTAAATA
14572444 AAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
1 AAAATCAAAATTT-C-AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
*** *
14572509 TAAATTTTCAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
64 TAAATTTTCAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT
* * *
14572561 GAAAATCAAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCCTAAAAAT
1 -AAAATCAAAATTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
*
14572626 AAATTTTCAAACAAACATTTTTGGGGAAAAGTT-AAAGTTTCAATTTTCCTT
65 AAATTTTCAAA-AAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT
* * *
14572677 AAAA-CTAAATTTTCAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
1 AAAATC-AAAATTTC-AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
14572741 TAAATTTTCAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT
64 TAAATTTTCAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT
14572793 AAGAAT--AAATTTCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
1 AA-AATCAAAATTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
14572847 CTACACAAAC
Statistics
Matches: 262, Mismatches: 17, Indels: 17
0.89 0.06 0.06
Matches are distributed among these distances:
113 27 0.10
114 14 0.05
115 38 0.15
116 150 0.57
117 20 0.08
118 13 0.05
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (115 bp):
AAAATCAAAATTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
AATTTTCAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT
Found at i:14572788 original size:173 final size:171
Alignment explanation
Indices: 14572442--14572846 Score: 562
Period size: 173 Copynumber: 2.3 Consensus size: 171
14572432 TTTCTTTAAA
*
14572442 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 TAAAAAT--AAATTT-C-AAAAAAACATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
*** *
14572507 AATAAATTTTCAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAA
61 AATAAATTTTCAAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAA
*
14572572 TTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
125 TTTCCAAAAAACATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
* * *
14572619 TAAAAATAAATTTTCAAACAAACATTTTTGGGGAAAAGTT-AAAGTTTCAATTTTCCTTAAAACT
1 TAAAAATAAA-TTTCAAAAAAACATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
*
14572683 AAATTTTCAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATT
64 AAATTTTC--AAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATT
* * * *
14572747 TTCAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
127 TCCAAAAAACATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
* *
14572792 TAAGAATAAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTCAAAAAAACATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
14572847 CTACACAAAC
Statistics
Matches: 205, Mismatches: 19, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
171 10 0.05
172 31 0.15
173 84 0.41
174 22 0.11
175 48 0.23
176 3 0.01
177 7 0.03
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (171 bp):
TAAAAATAAATTTCAAAAAAACATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA
ATTTTCAAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCCA
AAAAACATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
Found at i:14575818 original size:26 final size:26
Alignment explanation
Indices: 14575780--14575830 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14575770 CTGGTCAGAT
*
14575780 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14575806 CTTAGACTAGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
14575831 ACCATTTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14576178 original size:371 final size:372
Alignment explanation
Indices: 14575460--14576201 Score: 1109
Period size: 371 Copynumber: 2.0 Consensus size: 372
14575450 GAGTTTGTAC
14575460 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATC
1 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATC
14575525 TCAAATGGTCTTTTAAGGGGTGTGAGTTCTCGAGGTTCAATGAGGGATAGGGGGCCAATATAAGG
66 TCAAATGGTCTTTTAAGGGGTGTGAGTTCTCGAGGTTCAATGAGGGATAGGGGGCCAATATAAGG
*
14575590 GCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCACCCCCGGCCCCCCCGATCACCAAA
131 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGGCCCCCCCGATCACCAAA
* * * * * *
14575655 ACCCTAATACCGCCCGTCAGGTTCTCCGACGATGCTCCGATGATGGTGGCTCGGCGAAGAAAAAT
196 ACCCCAATACCGCCCGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* **
14575720 GTGCCACCAGCACATGCTTGAACCCAGCATGTGCTGCTGCAACCTTCGGTCTGGTCAGATCTTAG
261 GCGCCACCAGCACATGCCCGAACCCAGCATGTGCTGCTGCAACCTTCGGTCTGGTCAGATCTTAG
*
14575785 ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATA
326 ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATA
14575832 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTT-GCAGCAAACCTGTAAAAT
1 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA-TTGGCAGCAAACCTGTAAAAT
* ** *
14575896 CTCAAAT-G-CTGTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCTAATATA
65 CTCAAATGGTCT-TTTAAGGGG-TGTGAGTTCTCGAGGTTCAATGAGGGATAGGGGGCCAATATA
* * * **
14575959 AGGGCCAGGTACCAGCACCCATCGCACATCATGTGTGCATACC-CCCCCGGCCCCCCCGATCGTC
128 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGGCCCCCCCGATCACC
*** * * *
14576023 GGTACCCCAATGCCGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAA
193 AAAACCCCAATACCGCCCGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * *
14576088 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-TCGCAACCCTT-GGTCTGGTCCGAT
258 AATGCGCCACCAGCACATGCCCGAACCCAGCATGTGCTGCT-GCAA-CCTTCGGTCTGGTCAGAT
** *
14576151 CTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTAT
321 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
14576202 GCCTAAGTCA
Statistics
Matches: 333, Mismatches: 32, Indels: 11
0.89 0.09 0.03
Matches are distributed among these distances:
370 3 0.01
371 179 0.54
372 149 0.45
373 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (372 bp):
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATC
TCAAATGGTCTTTTAAGGGGTGTGAGTTCTCGAGGTTCAATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGGCCCCCCCGATCACCAAA
ACCCCAATACCGCCCGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
GCGCCACCAGCACATGCCCGAACCCAGCATGTGCTGCTGCAACCTTCGGTCTGGTCAGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATA
Found at i:14576201 original size:26 final size:26
Alignment explanation
Indices: 14576151--14576203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14576141 CTGGTCCGAT
**
14576151 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14576177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14576203 C
1 C
14576204 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14578653 original size:26 final size:26
Alignment explanation
Indices: 14578624--14578676 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14578614 CCAGTCCGAT
14578624 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
14578650 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14578676 C
1 C
14578677 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14579491 original size:895 final size:894
Alignment explanation
Indices: 14577035--14584192 Score: 8976
Period size: 903 Copynumber: 8.1 Consensus size: 894
14577025 GCATGCACTT
* *
14577035 CCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
1 CCACAACCCTCG-TCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
14577100 -CAA--A-CGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGAT
65 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * * * **
14577161 TGGGTGGTAGTTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATCACTTG
130 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
* * *
14577226 TAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTA
195 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * * *
14577291 TTTTTCATAATTTTTGAAACTTTTTGCAGTTCGGGATTTTCTAAAACTTTTTT-GGAAGGAGTTT
260 TTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTT
* *
14577355 TGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAA
324 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * * *
14577420 AAACTCGAAGTGTAAAACATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGTCACTTTAAT
389 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
14577485 TGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTT
454 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
14577550 GATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
519 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
14577615 --------CCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCACCGGTGATGCTCCGA
584 CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGA
* * **
14577671 CGATGGTGCCCCGGTGAAG-AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
649 CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
*
14577735 AA-CC-C--TC--G---G-TC-----C---G---G---TCCG-AT-CTTAGATTGGGAATGAACT
714 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
14577774 CCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTTAGTCGG-CAGAGAGGCGGGATG
779 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* ** * * *
14577838 -AGCAAGCCGGGGATCAACC-GGTCCCCCTCTACGTGCTGTCAATCCTACTA
844 CA-CAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
* ** * * * * *
14577888 TCACAAGTCTCAGTCTGGTCCAATCTCAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGAC
1 CCACAACCCTC-GTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
14577953 AAAATGAGCAGACGGGCGGGCGGGCACTACGCCGGCTAGAGAGGA-GGGATGCGCAAGCCGTGGA
65 GAAA--CG-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGA-GACGGGATGCGCAAGCCGTGGA
* *
14578017 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
125 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* *
14578082 GCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAA-A-GACTCGTT
190 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
14578145 TGCTATTTTTCACAATTTTTGAAACTTTTTGTTGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
255 TTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* *
14578210 GTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAA
320 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* * *
14578275 CTAAAACCTCGAAGTGTACAAGATTTTGTTACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTT
385 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
14578340 TAATGGTTACTGGCAGCAAACCTGTAAAATCTAAAATGTTCTTTAAGAGGGTGTGAGTTCTCTAG
450 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
**
14578405 GTTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCG
515 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
14578470 CACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT
580 CACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT
* * *
14578535 CCGACGATGGTGCCACGGCGAAGAAAATTACGGCACCAGCACATGCTCC-AGCCCAGCATGTGCT
645 CCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CCGAGCCCAGCATGTGCT
* ** *
14578599 GTCGTAACCCGT-GGTCCAGTCCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAA
709 GCCGTAACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
14578663 TGAACTTCGTATGCCTAAATCAACCCATGAAATAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGC
773 TGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** *
14578728 GGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTATCGAACCTACTA
838 GGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
* * * *
14578785 TCGCAACCCTCGTTGTGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAG-CAACCGAC
1 CCACAACCCTCG-TCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
14578849 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATTGAT
65 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
** *
14578914 AGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTCTACGTGATAATGCCATTTTTATTGCTTG
130 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
*
14578978 TAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
195 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
14579043 TTTTTCACGATTTTTAAAACTTTTTACAGTTCGAGATTTTTAAAAATTTTTTCGGAAGGAGTTTC
260 TTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * *
14579108 GACCCCAAACTTGGTTGGCGTGATCCCTGTATTTTTTTTTTGGCATGCACAAAAAAATTCAGCTA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
14579173 AAAACTCGAGGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
388 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
14579238 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
453 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * * *
14579303 TGATGAGGGATAAGGGACCATTATAAGGGCCTAGTACCAGCACCCATCACACATCATGTGCGCAC
518 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
14579368 ACTCCCCGGCCCCCTCGATCGTTGGAACCCCAATGTCGCCGGTCAGGTTGTCCGATGATGCTCTG
583 ACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG
** * * *
14579433 ACGATGGTGCCCCGGTTAAGAAAAATGCGGTACCAGCACATGCCCGACCCCAGCATGTGCTACCG
648 ACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
14579498 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
713 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * ** * * *
14579563 TCTGTATACCTAAGTCAACCCATGAAACAAGCGTCCGGGCACTCAGCCGACCAGAGGGGCGGGAT
778 TCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * *
14579628 GCGCAAGCCGAGGATCGGTCGGGTCCCCCTATACGTGCTGCCGATCCTGCTA
843 GCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
* * *
14579680 CCACAACCCTCGTTCTGGTTCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGAT
1 CCACAACCCTCG-TCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-
* ** * *
14579745 GGAACGAACGGGCAGACGGGCGGGCGGGCACTATACCGGCCAGAGAAATGGGATGCGCAAGCCGT
64 CG-A--AAC--G-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
14579810 TGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTTCCAATGCCATTTTT
122 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
14579875 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
187 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * **
14579940 GTTTTCTATTTTTCACGATTTTCCAAACTTTTTGCTGTTCGAGATTTTTCAAAATTTTTTCAAAA
252 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * *
14580005 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTGTTGTTGGCATGCAGAAAAAAATT
317 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* * * * *
14580070 CAGCAAAAAAGTCAAAGTGTATAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACA
382 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
14580135 GTTTAATGGTTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
447 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
14580200 GAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-CGCACATCATGT
512 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
14580264 GCGCACACCCCCCCGGCCCCCCCGATCGTCCGAACCTCAATGCCGCCGATCAGGTTCTCCAACGA
577 GCGCACA-CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA
* * * * * *
14580329 TGCTCCAACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGACCCCAGTATGT
641 TGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
14580394 GCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGG
706 GCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
14580459 AATGAACACCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAACCGACCAGAGGG
771 AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * *
14580524 GCGGGATGCACAAGTCGAGGATCGGTCGGGTCCCCCTATGCGTGTTGCCGATCCTGCTA
836 GCGGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
* * * * * * *
14580583 CCACAACCCTCATTTTGGTTTGATCTTAGACTGGGAATGACCTCTGTATGCCTAAGCCAATCGAT
1 CCACAACCCTC-GTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * ** * * * *
14580648 GAAACGAACGGGCGGACGGATGGGCAGGCACTATTCCAGCCAGAGAAATGGGATGCGCAAGCCAT
65 GAAACG-A---GC-G--GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
14580713 TGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTCTT
122 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
14580778 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTC
187 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
14580843 GTTTTTTATTTTTCATGATTTTTGAAACTTTTTGC-GATTCGGGATTTTTTAAAAATATTTTT-G
252 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTG-TTCGAGATTTTTT-AAAAT-TTTTTCG
* *
14580906 AAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
314 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * *
14580971 ATTCAGCCAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAG
379 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
14581036 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
444 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
14581101 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATTA
509 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * ** * **
14581166 TGTGCGCACACCCCCCGGCCCCCCCGATCATC-AAACCCCAATGCCGTTGGTTAATTTCTCCGAT
574 TGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
** * * *
14581230 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAT
639 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
14581295 TTTCTGCCGTAAGCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
704 GTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
14581360 GGAATGAACTCCGTATGCCTAAGTCAACCC-TCG-AATCGAGCATGCGGGCGCTCAGCCGGCCAG
769 GGAATGAACTCCGTATGCCTAAGTCAACCCAT-GAAAT-GAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
14581423 AGGGGCGAGATGCTCAAGCCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGCTGATCCTACTG
832 AGGGGCGGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
* ** * * *
14581486 CCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
1 CCACAACCCTC-GTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * *
14581551 GAAACGGGTGGGCGGGCAGGCATTACGCCGGCCAGAGAAACGGGAT-CGCAAGTCGTGGATCAAT
65 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
14581615 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTATGTGCCAATGCCATTTTTATGGCTTG
130 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
*
14581680 TAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
195 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
14581745 TTTTTCATGATTTTTGAAACTTTTTG-TAGTTC-AGGATTTTTTAAAATTTTTTCAGAAGGAGTT
260 TTTTTCACGATTTTTGAAACTTTTTGCT-GTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
14581808 TTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAATTCAGCTA
323 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* * * * *
14581873 AAACCTCTAAGTGTACAAGATTTGGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGATACTTTAA
388 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* ** * * * * *
14581938 -GG-----GG--G------TGTGAGTTCTC-AA-GGT-TTGATGAGGG-AT-AG-----G-GG--
453 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
** ** * ** * * * * * *
14581976 -G-CCA-ATATA-AGCACCAA-GT-A---CC-AGCACC--CATCGCA---CATCAT-GTGCGCAC
518 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCA-CATCATGTGCGC
* * * *
14582025 AC-CCCCCCGGCCCC-TCGATCGCCAGAACCCCAATGCCGCGGGTCAGGTTCTCCGACGATGCTC
581 ACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTC
* * * * * *
14582088 TTG-TGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGTACATGCCCGAGCCCAGCATGTGCTG
646 -CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
** * *
14582152 CCGTAACCCTTAGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATG
710 CCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
14582217 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCTGCCGGCCAGACGGGCGG
775 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* ** * * *
14582282 GATGCTCAAGCC-AGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCATGC-A
840 GATGCACAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
* * ** * * *
14582336 GCCACAACCCTCAGTCCGGTCCGATCTTACTCTGCGAATGAACTCCATATGCTTAAGCCAACCGA
1 -CCACAACCCTC-GTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
14582401 CGAAACGAGCGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGA
64 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
14582466 TAGGGTGGTAGGTGGGTTTAGGCACA---TC-----TGT--GTGCCAATGCCATTTTTATGGCTT
129 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* * * *
14582521 GTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAACTTTCATGGCAAGACGACTCATTTTCC
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
14582586 ATTTTTCACAATTTTTGAAACTTTTTG-TGGTC-AGGATTTTTTTAAATTTTTTCGGAAGGAGTT
259 ATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * *
14582649 TCGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTA
323 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* * *
14582714 AAAGCTCGTATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
388 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
14582779 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
453 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
14582844 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGTACATCTTGTACGCAC
518 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
14582909 ACCCCCCCGG-CCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTC
583 A-CCCCCCGGCCCCCT-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTC
* * * *
14582973 CGACGATGGTGCCCCGGTGAAGAAAATTGTGGCACCAGCACATGCCCGAGTCCAGCATGTGCTGC
646 CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * ** *
14583038 CGTAACCCAT-GGTCCGGTCCGATCTTAGACTGGCAATGAACTTTGTATGCTTAGACTGGGAATA
711 CGTAACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * *
14583102 AACTCCGTATGCCTAAATCAACCCATCAAATGAGCGTACGGGAGCTCAACCGGCCAGAGGGGTGG
775 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
** * * *
14583167 GATGCGTAAGCTGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAACCTACTG
840 GATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
* * *
14583222 CCGCAACCCTCGGTGTGG-TCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAG-CAACCGA
1 CCACAACCCTC-GTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
14583285 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGA
64 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
14583350 TAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTCTGCGTGCCAATGCCATTTTTATTGCTT
129 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* *
14583414 GTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * *
14583479 ATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
259 ATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
** * * * * *
14583544 CAGTCCCAAACTTGGTAGACATGATCCCTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
324 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * *
14583609 AAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
389 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
14583674 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGCGGGTGTGAGTTCTCAAGGTTT
454 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
14583739 GATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCTATCGCACATCATGTGCGTACA
519 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* *
14583804 CCCCCCCGGCCCCC-CTATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG
584 -CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG
* * * *
14583868 ACGATGGTGCCCCGGTGAAGAAAAATGCGGTACCAGCACATGACAGAGCCCA-CATGTGCTGCCG
648 ACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* ** *
14583932 TAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATTTTTAGATTGAGG-ATGAA
713 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GGAATGAA
* * * * * *
14583996 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGAGGAGTGGGA
777 CTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * ** * * * * *
14584061 AGCGCAAGCCGGGGATTGGTGGGGTCCCCTTCTGTGTCCTACCGATCCTACTG
842 TGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
*
14584114 CCACAACCCTTGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 CCACAACCC-TCGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
14584178 CGAAACGAGCGGGCG
64 CGAAACGAGCGGGCG
14584193 TGCTGGCGGG
Statistics
Matches: 5491, Mismatches: 647, Indels: 294
0.85 0.10 0.05
Matches are distributed among these distances:
841 149 0.03
842 112 0.02
844 2 0.00
847 2 0.00
849 3 0.00
850 6 0.00
851 350 0.06
852 54 0.01
853 60 0.01
854 5 0.00
855 11 0.00
856 6 0.00
857 4 0.00
858 13 0.00
859 301 0.05
860 4 0.00
861 157 0.03
862 7 0.00
863 3 0.00
864 1 0.00
865 1 0.00
866 2 0.00
867 5 0.00
868 67 0.01
869 40 0.01
870 5 0.00
871 3 0.00
872 5 0.00
873 3 0.00
874 3 0.00
875 2 0.00
876 7 0.00
877 4 0.00
878 8 0.00
879 13 0.00
880 2 0.00
881 3 0.00
882 7 0.00
883 3 0.00
884 106 0.02
885 298 0.05
886 2 0.00
887 3 0.00
890 1 0.00
891 81 0.01
892 301 0.05
893 457 0.08
894 458 0.08
895 620 0.11
896 48 0.01
897 76 0.01
898 2 0.00
899 5 0.00
900 5 0.00
901 1 0.00
902 27 0.00
903 1028 0.19
904 339 0.06
905 200 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CCACAACCCTCGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACG
ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCA
CAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
Found at i:14579557 original size:26 final size:26
Alignment explanation
Indices: 14579519--14579569 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14579509 CTGGTCTGAT
*
14579519 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14579545 CTTAGACTAGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
14579570 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14580451 original size:26 final size:26
Alignment explanation
Indices: 14580422--14580474 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14580412 CTGGTCCGAT
* *
14580422 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14580448 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14580474 C
1 C
14580475 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:14581354 original size:26 final size:26
Alignment explanation
Indices: 14581325--14581377 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14581315 CTGGTCCAAT
*
14581325 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14581351 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14581377 C
1 C
14581378 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14582212 original size:26 final size:26
Alignment explanation
Indices: 14582176--14582228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14582166 CTGGTCCGAT
14582176 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
14582202 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
14582228 C
1 C
14582229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:14583111 original size:26 final size:26
Alignment explanation
Indices: 14583061--14583113 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14583051 CCGGTCCGAT
* **
14583061 CTTAGACTGGCAATGAACTTTGTATG
1 CTTAGACTGGCAATAAACTCCGTATG
*
14583087 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGCAATAAACTCCGTATG
14583113 C
1 C
14583114 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACTCCGTATG
Found at i:14583812 original size:894 final size:883
Alignment explanation
Indices: 14581932--14584192 Score: 3273
Period size: 885 Copynumber: 2.5 Consensus size: 883
14581922 ATTTCAGATA
**
14581932 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTAC
1 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
14581997 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCT-CGATCGCCAGAACCCCAATGC
66 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGC
* * * * ***
14582061 CGCGGGTCAGGTTCTCCGACGATGCTCTTG-TGATGGTGCCCCGACAAAGAAAAATGTGGCACCA
131 CGCCGGTCAGGTTCTCCGATGATGCTC-CGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCA
* * * *
14582125 GTACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTAGTCTGGTCCGATCTTACACTGGGAAT
195 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC-TGGTCCGGTCCGATCTTAGACTGGGAAT
* *
14582190 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTG
259 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATCAAATGAGCGTG
* * * * * *
14582255 CGGGTGCTCTGCCGGCCAGACGGGCGGGATGC-TCAAGCCAGGGATCGATCGGGTCCCCCTCTAC
324 CGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGT-AAGCGA-GGATCGGTCGGGTCCCCCTCTGC
* * * * * * * * *
14582319 GTGCTGCCGATCATGCAGCCACAACCCTCAGTCCGGTCCGATCTTACTCTGCGAATGAACTCCAT
387 GTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGT
* * *
14582384 ATGCTTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATG
452 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
*
14582449 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGTGTGCCAATGCCATTTTT
517 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCGTGCCAATGCCATTTTT
14582514 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAACTTTCATGGCAAGACGACTC
582 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAACTTTCATGGCAAGACGACTC
** ** *
14582579 ATTTTCCATTTTTCACAATTTTTGAAACTTTTTGTGGTCAGGATTTTTTTAAATTTTTTCGGAAG
647 ATTTTCCATTTTTCACAATTTTCAAAACTTTTTACGGTCAGGATTTTTTAAAATTTTTTCGGAAG
* * * * * *
14582644 GAGTTTCGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTC
712 GAGTTTCAGCCCCAAACTTGGTAGACATGATCCCTATATTTTTGTTGGCATGCACAAAAAAATTC
* ** *
14582709 AGCTAAAAGCTCGTATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
777 AGCTAAAAACTCAAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
*
14582774 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
842 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGAT
14582816 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
1 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
14582881 CAGCACCCACCGTACATCTTGTACGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGC
66 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGC
* *
14582946 CGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAATTGTGGCACCAG
131 CGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAG
* *
14583011 CACATGCCCGAGTCCAGCATGTGCTGCCGTAACCCATGGTCCGGTCCGATCTTAGACTGGCAATG
196 CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC-TGGTCCGGTCCGATCTTAGACTGGGAATG
** * * *
14583076 AACTTTGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAATCAACCCATCAAATGAGCGTAC
260 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATCAAATGAGCGTGC
* * *
14583141 GGGAGCTCAACCGGCCAGAGGGGTGGGATGCGTAAGCTGAGGATCGGCCGGGTCCCCCTCTGCGT
325 GGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGC-GAGGATCGGTCGGGTCCCCCTCTGCGT
* * *
14583206 GCTGCCGAACCTACTGCCGCAACCCTCGGTGTGGTCTGATCTTACACTGGGAATGAACTCCGTAT
389 GCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTAT
*
14583271 GCCTAAG-CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCG
454 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
14583335 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTGCCAATGC
519 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG--CA-C----A--TCTGCGTGCCAATGC
* * * *
14583400 CATTTTTATTGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
575 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAACTTTCATGGCAAG
** * *
14583465 ACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAATTT
640 ACGACTCATTTTCCATTTTTCACAATTTTCAAAACTTTTTACGG-TCAG-GATTTTTTAAAATTT
*
14583529 TTTCGGAAGGAGTTTCAGTCCCAAACTTGGTAGACATGATCCCTATATTTTTGTTGGCATGCACA
703 TTTCGGAAGGAGTTTCAGCCCCAAACTTGGTAGACATGATCCCTATATTTTTGTTGGCATGCACA
14583594 AAAAAATTCAGCTAAAAACTCAAAGTT-TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
768 AAAAAATTCAGCTAAAAACTCAAA-TTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
14583658 TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGAT
832 TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGAT
* *
14583710 CTTTAAGCGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTAC
1 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * *
14583775 CAGCACCTATCGCACATCATGTGCGTACACCCCCCCGGCCCC-CCTATCGTCGGAACCCTAATGC
66 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGC
* *
14583839 CGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGTACCAG
131 CGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAG
* *
14583904 CACATGACAGAGCCCA-CATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
196 CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT-GGTCCGGTCCGATCTTAGACTGGGAATG
** * *
14583968 AACTCCGTATTTTTAGATTGAGG-ATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGT
260 AACTCCGTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCATC-AAATGAGCGT
* * * * * * * * *
14584031 GCAGGTGCTCAGCCGGCCAGAGGAGTGGGAAGCGCAAGCCGGGGATTGGTGGGGTCCCCTTCTGT
323 GCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAG-CGAGGATCGGTCGGGTCCCCCTCTGC
* * * *
14584096 GTCCTACCGATCCTACTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
387 GTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGT
14584161 ATGCCTAAGCCAACCGACGAAACGAGCGGGCG
452 ATGCCTAAGCCAACCGACGAAACGAGCGGGCG
14584193 TGCTGGCGGG
Statistics
Matches: 1227, Mismatches: 129, Indels: 33
0.88 0.09 0.02
Matches are distributed among these distances:
884 193 0.16
885 301 0.25
886 4 0.00
887 1 0.00
891 3 0.00
892 212 0.17
893 230 0.19
894 281 0.23
895 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (883 bp):
CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTGGTCCGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATCAAATGAGCGTGCG
GGTGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCGAGGATCGGTCGGGTCCCCCTCTGCGTGC
TGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAACTTTCATGGCAAGACGACTCATTT
TCCATTTTTCACAATTTTCAAAACTTTTTACGGTCAGGATTTTTTAAAATTTTTTCGGAAGGAGT
TTCAGCCCCAAACTTGGTAGACATGATCCCTATATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCAAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGAT
Found at i:14583983 original size:26 final size:26
Alignment explanation
Indices: 14583954--14584003 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14583944 CGGTCCGATC
14583954 TTAGACTG-GGAATGAACTCCGTATTT
1 TTAGACTGAGG-ATGAACTCCGTATTT
*
14583980 TTAGATTGAGGATGAACTCCGTAT
1 TTAGACTGAGGATGAACTCCGTAT
14584004 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (26 bp):
TTAGACTGAGGATGAACTCCGTATTT
Found at i:14584653 original size:4 final size:4
Alignment explanation
Indices: 14584644--14584670 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
14584634 GACGAAACGA
14584644 GCGG GCGG GCGG GCGG GCGG GCGG GCG
1 GCGG GCGG GCGG GCGG GCGG GCGG GCG
14584671 AGAACTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.26, G:0.74, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:14586989 original size:871 final size:858
Alignment explanation
Indices: 14584209--14587529 Score: 3991
Period size: 870 Copynumber: 3.8 Consensus size: 858
14584199 CGGGCCAATA
* * *
14584209 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACAAG
1 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
14584274 CACCCATCGCACATCATGTGTGCACACCCCCCGCCCCTCGATCGTTAAAACCACAATGCCGTCGG
66 CACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCAGAACCCCAATGCCGTCGG
** ** * * ** * *
14584339 TCAGGTTCTCCGGTGATGGCACCCTGGCGAAGAAAAATGTGGCACCAACACAGGCCCGAGCCCAG
131 TCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * * **
14584404 CATGTGCTGTCGCAACCCTTGGTCTGTTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
196 CATGTGCTGCCGCAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * ** * *
14584469 TCAACCCATGAAACGAACGTGCGGGCACTCAGCTGGCCAGAGGGGTGGGATGTGCAAGCCGGAGA
261 TCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGA
* * * * * * * **
14584534 TCGGCCGGGTCCCCTTCTACGTGCTGTCGATCCTATTACCACAACCCTCAG-TCTAGTCCAATCT
326 TCGACCGGGTCCCCCTCTACGTGCTGGCGATCCTATTGCCGCAACCCTCGGTTC-GGTCTGATCT
* * * *
14584598 TAGACTGGGAATGAACTTCGTATGCATAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCG
390 GAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--------ACGGGCGGGCG
* * * * *
14584663 GGCGGGCGAGAACTATGTCGACCAGAGAGACGGGATGCGCAAGCCGTAGATTGATAGGGTGGTAG
446 GGTGGGC----ACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAG
*
14584728 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
507 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14584793 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
572 CAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
* * *
14584858 TTTTTAAAAGTTTTGT--TGTTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
637 TTTTTAAAACTTTT-TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
14584920 CTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
701 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAG
* * * *
14584985 TATACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTGGC
765 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14585050 AGCAAACTTGTAAAATCTAAAATGCTCTT
830 AGCAAACCTGTAAAATCTCAAATGCTCTT
* * * * **
14585079 TAAAGGGGTTTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGCACCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
*
14585144 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGCC
66 CACCCATCGCACATCATGTGCGCACACCCCCC-G-CCCCCCGATCGTCAGAACCCCAAT---GCC
* * * * *
14585209 GGTTAGGTTCTCCGGTGATGCTACGACGATGGTGCCCCGACGAAGAAAATTACGGCACAAGCACA
126 -G-TCGG---TCAGGT--T-CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
* * *
14585274 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCGCGGTCTGGTCTGATCTTAGACTGGCAATGAACT
183 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACT
* *
14585339 CCGTATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCATGAAACGAACGTGCGGGC
248 CCGTATGCCTA-A----G--TCAAC-CC-----AC--A---AA---ATG--A-G--CGTGCGGGC
* * * * * * * *
14585404 GCTCTGCCGGCCAGAGGGGAGGGATGCTCAAGCCAGGGATCGATCGAGTCCCCCTCTGCGTGCTG
287 GCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG
* * ** * * * * * ***
14585469 CCGATCTTACAGCCGTAATCCTCGATCCGGTCTGATCTTACTTTGGGAATGAACTCCGTATGCCT
352 GCGATCCTATTGCCGCAACCCTCGGTTCGGTCTGATCTGAGACTGGGAATGAACTCCGTATGCCT
* ** * * *
14585534 AAGCCAACAGAC--AA-AACGAACGGGCGGGTGGGCACTATGTCGGCCAGAGAGACGGGATGCGC
417 AAGCCAACCGACGAAACAACGGGCGGGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGC
* * * *
14585596 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAAGC
482 AAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
14585661 CATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
547 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAG
* * * * * * *
14585726 ATGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTATGCAGTTCGAAATTTTTTAAAATTTT
612 ATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
14585791 TTCGGAAGGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTAAAA
677 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAA
* * *
14585856 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTGGCGATCATTTGAAAAAAGTGTCCCCATTT
742 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
14585921 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
807 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
14585973 TAAGGGGGTGTG-GTTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
1 TAAGGGGGTGTGAG-TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
14586037 GCACCCATCGTACGTCATGTGCGCACACCCCCCCGGTCCGCCCGATCGTCGGAACCCCAATGCCG
65 GCACCCATCGCACATCATGTGCGCACA-CCCCCC-G-CCCCCCGATCGTCAGAACCCCAATGCCG
* * *
14586102 TCGATCAGGTTCTCCGACGATAGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
127 TCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* *
14586167 CCAGCATGTGCTGCCGTAACCCTCGGTTC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
192 CCAGCATGTGCTGCCGCAACCCTCGG-TCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14586231 CTAAGTCAACCCACAAAATGAGCTTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTC
256 CTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCC
* * * * *
14586296 GGGGATCGACCGGGTCCCCCTCTGCATGCTGGCGATCCTGTTGCTGCAACCCTTGGTTCGGTCTG
321 GGGGATCGACCGGGTCCCCCTCTACGTGCTGGCGATCCTATTGCCGCAACCCTCGGTTCGGTCTG
14586361 ATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCG
386 ATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA---------CGGGCG
*
14586426 GGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTTGATCGATAGGGTGGTAG
442 GGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAG
* *
14586491 GTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATCGCTTGTAAATTCATA
507 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14586556 CAATAGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTCTTCTATTTTTCACGA
572 CAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
* * * *
14586621 TTTTCAAAACTTTTTACGGTT-TAGGATTTTTAAAAAATTTTTT-GGAACGAGTTTTGGCCCCAA
637 TTTTTAAAACTTTTTACGGTTCGA-GATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
14586684 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAACATTCAGCTAAAAACTCAAA
700 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAA
14586749 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
764 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
14586814 CAGCAAACCTGTAAAATCTCAAATGCTTTT
829 CAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
14586844 TGAGGGGGTGTG-GTTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCA
1 TAAGGGGGTGTGAG-TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
14586908 GCACCCATCGTACGTCATGTGCGCACACCCCCCCGACCCCCCTGATCGTCAGAACCCCAATGTCG
65 GCACCCATCGCACATCATGTGCGCACA-CCCCCCG-CCCCCC-GATCGTCAGAACCCCAATGCCG
* *
14586973 TCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCA
127 TCGGTCAGGTTCTCCG---A--------CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCA
* * *
14587038 CATGCCTGAGTCCAGCATGTGCTGCCACAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAA
181 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAA
* * * * * *
14587103 CTCTGTATGCCTAAGTCAACCCATAAAATGAGC-TCGCGAGCGCTCAGCCAACCAGAGAGGTAGG
246 CTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT-GCGGGCGCTCAGCCAGCCAGAGGGGTGGG
* * * * * * *
14587167 ATGCGCAAGTCGGGGATCGATCGGGTCCGCCTCTACGTGCTGGCGATGCTGTTGCTGCAACCCTT
310 ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGGCGATCCTATTGCCGCAACCCTC
* *
14587232 GGTTTGGTCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAA---G
375 GGTTCGGTCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAACGGG
* * **
14587294 CGAGC----GGGCACTACGCCGGCCAGAGAGACGGCTTGCGCAAGCCGTTGATCGATAGGGTGGT
440 CGGGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGT
* *
14587355 AGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCA
505 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
14587420 TACAATGGTCCCTTAACCCTTCACCTCAAGTTTCATGGTAAGATGACTCGTTTTCTATTTTTCAC
570 TACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAC
14587485 GATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
635 GATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
14587530 AGAACATGGC
Statistics
Matches: 2132, Mismatches: 242, Indels: 158
0.84 0.10 0.06
Matches are distributed among these distances:
858 124 0.06
860 3 0.00
861 3 0.00
863 3 0.00
865 10 0.00
866 204 0.10
867 1 0.00
869 2 0.00
870 361 0.17
871 259 0.12
872 19 0.01
874 1 0.00
875 3 0.00
876 3 0.00
877 7 0.00
879 1 0.00
880 5 0.00
881 3 0.00
882 264 0.12
883 101 0.05
884 109 0.05
885 3 0.00
887 5 0.00
888 1 0.00
890 6 0.00
891 3 0.00
892 4 0.00
893 185 0.09
894 197 0.09
895 102 0.05
896 1 0.00
897 14 0.01
901 2 0.00
904 2 0.00
905 1 0.00
906 1 0.00
907 2 0.00
909 116 0.05
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (858 bp):
TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCAGAACCCCAATGCCGTCGG
TCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGA
TCGACCGGGTCCCCCTCTACGTGCTGGCGATCCTATTGCCGCAACCCTCGGTTCGGTCTGATCTG
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAACGGGCGGGCGGGTGGGCACT
ACGCCGACCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTTGGCATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTT
Found at i:14588039 original size:550 final size:546
Alignment explanation
Indices: 14586992--14588079 Score: 1471
Period size: 550 Copynumber: 2.0 Consensus size: 546
14586982 TTCTCCGACA
* * *
14586992 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGTCCAGCATG
1 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATG
* * *
14587057 TGCTGCCACAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
66 TGCTACCACAACCCTC-GT---GTCAGATC-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
14587122 CCCATAAAATGAGCTCGCGAGCGCTCAGCCAACCAGAGAGGTAGGATGCGCAAGTCGGGGATCGA
126 CCCACAAAAGGAGCTCGCGAGCGCTCAGCCAACCAGAGAGGCAGGATGCGCAAGTCAGGGATCGA
* * * * * **
14587187 TCGGGTCCGCCTCTACGTGCTGGCGATGCTGTTGCTGCAACCCTTGGTTTGGTCTGATCTGAGAC
191 CCGGGTCCCCCTCTACGTGCTGGCGATCCTGCTGCTGCAACCCTAGGTTCAGTCTGATCTGAGAC
* *
14587252 TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGAGCGGGCACTACGCCGGCCAG
256 TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGAGCGGGCACTACGCCGACCAA
* * *
14587317 AGAGACGGCTTGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATT
321 AGAGACGGCATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATT
* * * **
14587382 TCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACCTC
386 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTGAACAATTCACCTC
* *
14587447 AAGTTTCATGGTAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAG
451 AAGTTTCATGGTAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAG
*
14587512 ATTTTTTAAAATTTTTTCAGAACATGGCAAG
516 ATGTTTTAAAATTTTTTCAGAACATGGCAAG
* * *
14587543 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATG
1 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATG
14587608 TGCTACCACAA-CC-C-T-T-AG-TC-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
66 TGCTACCACAACCCTCGTGTCAGATCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
14587666 AAAAGGAGCGT-GCGAGCGCTCAGCCAACCAGAGGGGCGGGATGCGTAAGTCAGGGATCGACCGG
131 AAAAGGAGC-TCGCGAGCGCTCAGCCAACCAGAGAGGCAGGATGCGCAAGTCAGGGATCGACCGG
* *
14587730 GTCCCCCTCTGCGTGCT-GCTGATCCTGCTGCTGCAACCCTAGG-TCAGT-TGGATCTTAGACTG
195 GTCCCCCTCTACGTGCTGGC-GATCCTGCTGCTGCAACCCTAGGTTCAGTCT-GATCTGAGACTG
* *
14587792 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGACGGGCGGGCGGGCACTA
258 GGAATGAACTCCGTATGCCTAAGCCAA-C--TG--ACGA--A-ACA-A---GCGAGCGGGCACTA
* *
14587857 CGCCGACCAAAGAGACTGG-ATGGGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTAC
311 CGCCGACCAAAGAGAC-GGCATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
14587921 ATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTGAA
375 ATCTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTGAA
* * * *
14587986 GAATTCACGTGAAGTTTCATGGTAAGATGACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTT
440 CAATTCACCTCAAGTTTCATGGTAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
14588051 TACGGTTCAAGATGTTTTAAAATTTTTTC
505 TACGGTTCAAGATGTTTTAAAATTTTTTC
14588080 GAAAGGAGAT
Statistics
Matches: 473, Mismatches: 48, Indels: 33
0.85 0.09 0.06
Matches are distributed among these distances:
537 1 0.00
538 43 0.09
539 127 0.27
540 1 0.00
541 4 0.01
542 1 0.00
543 5 0.01
545 1 0.00
546 2 0.00
547 2 0.00
549 1 0.00
550 214 0.45
551 71 0.15
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (546 bp):
ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATG
TGCTACCACAACCCTCGTGTCAGATCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
AAAAGGAGCTCGCGAGCGCTCAGCCAACCAGAGAGGCAGGATGCGCAAGTCAGGGATCGACCGGG
TCCCCCTCTACGTGCTGGCGATCCTGCTGCTGCAACCCTAGGTTCAGTCTGATCTGAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGAGCGGGCACTACGCCGACCAAAGAGA
CGGCATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTGAACAATTCACCTCAAGTT
TCATGGTAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATGTT
TTAAAATTTTTTCAGAACATGGCAAG
Found at i:14588552 original size:26 final size:26
Alignment explanation
Indices: 14588503--14588553 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14588493 GATCCGATCT
* *
14588503 TAGACTGGGAATTAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCATATGCG
*
14588529 TAGACTGGGAATGAACTCTATATGC
1 TAGACTGGGAATGAACTCCATATGC
14588554 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCG
Found at i:14590314 original size:26 final size:26
Alignment explanation
Indices: 14590276--14590328 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14590266 ACAGTCTGAT
*
14590276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14590302 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14590328 C
1 C
14590329 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14591767 original size:896 final size:891
Alignment explanation
Indices: 14587628--14597658 Score: 9231
Period size: 903 Copynumber: 11.1 Consensus size: 891
14587618 ACCCTTAGTC
* * * * **
14587628 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTGCGAGCGCTCAGCCAA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* * ** *
14587693 CCAGAGGGGCGGGATGCGTAAGTCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTGC
66 CCAGAGGGGCGGGATGCGCAAGT-GGGGATCG-GTGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* ** * *
14587758 TGCTGCAACCCTAGGTCAGTT-GGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
129 TGC-GAAACCCTCTGTCCGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * *
14587822 ATGAAACGAGCAGGCAGACGGGCGGGCGGGCACTACGCCGACCAAAGAGACTGGATGGGCAAGCC
193 ACG-AA--A-C--G-AG-TGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
14587887 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTT-CATGCCAATGCCATT
250 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTGCATGCCAATGCCATT
* * ** * *
14587951 TTTATGGCTTGTAAATTCATAAAATGGTCCCTGAAGAATTCACGTGAAGTTTCATGGTAAGATGA
314 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
14588016 CTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCAAGATGTTTTAAAATTTTTTCG
379 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCG
* * *
14588081 AAAGGAGATTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTCGGCATGCACAAAAA
444 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAA
*
14588145 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCA
508 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
14588210 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTTAGT
573 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14588275 TCTCGAGCTTTGATGTGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATC
638 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
14588340 ATGTGCGCACACCCCCTCGACCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCG
703 ATGTGCGCACACCCCC-CGGCCCCCCCGATCCTGA-AACCCCAATGCCGTCGGTCAGGTTCTCCG
* * *
14588405 ACGATGCTCCGGCGATGGTGCCCCGTCGAAGAAAAATGCGACACCAGCACATGCCCGA-CCCAGC
766 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
14588469 ATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATTAACTCCGTATGCGT
831 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
** * * *
14588530 AGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAACTGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* * * * * *
14588595 CCAGAAGGGCGGGATTCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCAATCCTGC
66 CCAGAGGGGCGGGATGCGCAAG-TGGGGATCGGT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * ** *
14588660 TGCCACAACCCTC-GATCCAG-ACCCATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAAC
129 TGCGA-AACCCTCTG-TCC-GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
14588723 CGATGAAACAAGTGGGCGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
191 CGACGAAACGAGTGGGC--G-A-----GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * * *
14588788 TCGTGGATCGATAGGGTGGTAGGAGTGTTTAGGCACATCTTCATATTTCTACGTGCCGATGCCAT
248 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
* *
14588853 TTTTATAGG-TTGTCAATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
313 TTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
14588917 GACTCATTTTCTATTTTTCATAATTTTGGAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTT
377 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
** * * * *
14588982 CTAAAGGATTTTTGGCCTCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAA
442 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
14589047 AAATTTAGCCAAAAACTTGAAGTGTACAAGATTCTGTGACCATGTGAAAAAAGTGTCCCCATTTC
507 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14589112 AGACACTTTAACGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
572 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
14589177 TTCTCAAGGCTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATTGCACAT
637 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
14589242 CATGTGCGCACAACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCT
702 CATGTGCGCAC-ACCCCCCGGCCCCCCCGATC-CTGAAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
14589307 GACGATGCTCCGACGATAGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAG
765 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
14589372 CATGTGCTGACACAA-CC-C--TC--G---G----T---CT--G-AT--A---CG-AT-CTT
830 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
14589408 -GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGACGT-T-CGGGCGCTCAGCC
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GA-GTGTGCGGGCGCTCAGCC
* * *
14589470 GGCCAGAGGGGCGGGATGCGTAGCAG-GGGGAT-GGATCGAGTCCCCCTCTGCATGCTGCCGATC
64 GGCCAGAGGGGCGGGATGCGCA--AGTGGGGATCGG-T-GGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * * *
14589533 CTCCTGCGGCAACCCT-TGGTCCAG-TCCAATCTTAGACTAGGAATGAACTCTGTATGCCTCAGC
125 CTGCTGC-GAAACCCTCT-GTCC-GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
14589596 CAACCGACGAAACGAGCGGGCGGGCGGTCGAGCACTATGCCGACCAGAAAGACGGGATGCGCAAG
187 CAACCGACGAAACGAGTGGGCGAGC-G--G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
14589661 CCGTGGATCGATAGGGTGGCAGGTGGGTTTAGCCACATCTTCATATTTCTACATGCCAATGCCAT
248 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
* *
14589726 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAACTTTCATGGCAAGACG
313 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
14589791 ACTCTTTTTCTATTTTCCATAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
378 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
* *
14589856 GGAAGGATTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
443 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
14589921 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
508 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
14589986 GATACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTGAGC
573 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14590051 TGTGGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATC
638 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
14590116 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCACGTTCTCCGA
703 ATGTGCGCACACCCCCCGGCCCCCCCGATC-CTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGA
** * * * * *
14590181 CGATGCTTTGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACGAGTACATGCCTGAGCCCAGCA
767 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
14590246 TGTGCTGTCGTAA-CCTCGGTAC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
832 TGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** ** *
14590305 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAACGAGCATGCGGGCGCTCAGCCAG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* ** ** * *
14590370 CCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGCCAGGTCCCCCTCTATGTGCTACTGATCCTGC
66 CCAGAGGGGCGGGATGCGCAAG-TGGGGATCGG-TGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * * *
14590435 TGTCGCAACCCTC-GATCTGGTTC-CATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCGAAC
129 TG-CGAAACCCTCTG-TC-CGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
14590498 CGACGGAACGAGCGGTCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
191 CGACGAAACGA---GT-GGGCGAGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
14590563 CCGTGGAACGATAGGGT-GTA-GTGTGGTTTAGGCACATC-TCATATTTCTGGCATGTCAA-GCC
248 CCGTGGATCGATAGGGTGGTAGGTG-GGTTTAGGCACATCTTCATATTT-TTGCATGCCAATG-C
* * * *
14590624 CATTTTTATGGCTTGTAAATTTATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAAGGCATG
310 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** ** *
14590689 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCAAGATTTTTTTAAATTTT
375 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTT
* *
14590754 TTCGGAAGGCGTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
440 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14590819 AACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
505 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
14590884 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
570 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14590949 AGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCTCCCATCGTAC
635 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
14591014 ATCATCTGTGCACACCGCCCTCGGGCCCCCCAATCACTGAAACCCCAATACCGCCGGTCAGGTTC
700 ATCATGTGCGCACACC-CCC-CGGCCCCCCCGATC-CTGAAACCCCAATGCCGTCGGTCAGGTTC
*
14591079 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
762 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * ** *
14591144 CAGCATGTGCTGCCACAACCCTCAGTCTGGCCCGATCTTAGACTACGAATGAACTCCGTATGCCT
827 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
14591209 AGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTCAACCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* * * * * *
14591274 CCAGAGGGGCAGGATGCGCAAGTGGGGGATCGGTTGGTTCCCCTCTACGTGATGTCGATCCTGCT
66 CCAGAGGGGCGGGATGCGCAAGT-GGGGATCGGTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * *
14591339 AGGGAAACCCTCTGTCCGTTCTGATCTTAGACTGGGAATGAACTCGGTATGCTTAAGCCAACCGA
130 -GCGAAACCCTCTGTCCGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
14591404 CGAAACGAGTGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGA
194 CGAAACGAGTGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
14591469 TAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTTTCCATGCCATTGCCATTTTTATGGCTT
259 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTT
* *
14591534 GTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
324 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * * ** * *
14591599 ATGTTTCACAATTTTAAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAGAAGAAGTTT
389 ATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
14591664 TGGCCCCACACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAA
454 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
14591729 AAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAT
519 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* **
14591794 GGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTT
584 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
14591859 GTTGAGGGATAGGGCGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACA
649 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
14591924 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGT
714 CCCCCCGGCCCCCCCGATCCT-GAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* * * * ** * *
14591989 CGATGGTGCCCTGGCGAAGAAAAATACAGC-CTGGGCACATGCTCGAGCCCAGCATGTGCTGTCG
778 CGATGGTGCCCCGACGAAGAAAAATGCGGCAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
14592053 CAACCCTCGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTT
842 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
14592103 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* * * ** * * *
14592168 CTAGAGGGGCAGGATGCGTAAGCTGGGGATCAGCCGGGTCCCCCTCT--GTG-TGCAGGTTCT-C
66 CCAGAGGGGCGGGATGCGCAAG-TGGGGATC-GGTGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * **** ** * * * * * ** * * * * **
14592229 AGTCG--GCCAGAGGGGCG---AGATGCATAAGCCGGGGATCGGTTGGTCCCCTTCTGCGTGTTG
129 TG-CGAAACCCTCTGTCCGTTCTGAT-C-TTAGACTGGGA----ATGAACTCCGTATGCCT-AAG
* * * * ** * *
14592289 CCGATCCTGCTACCGTAACCA-T---C-AGTCTGGTCTGATCTTA-AACTG--AGA-ATGAACTC
186 CC-AACC-G--A-CGAAACGAGTGGGCGAG-C-GGGC--A-C-TACGCCGGCCAGAGA-G-AC-G
* * * * * * *** * **
14592345 GTATGC-CTAAGCCAATCGA-CGAAACGAGCGGGCGGACGG-GCGG-CCGGGCACTACGCCGGCC
237 GGATGCGC-AAGCC-GTGGATCGATA-G-G-GTG-GTA-GGTG-GGTTTAGGCAC-A--TC-TTC
* ***** * * * *
14592406 AGAGAGACGAGATGCGTAA-GCCTTGGATCGATAGGTGGTAGGTGGGTT-TAGGCACA-TCAT-C
290 ATATTTTTG-CATGC-CAATGCC----AT---T---T-TTA--TGGCTTGTA---A-ATTCATAC
* * * * * * * *
14592467 ATAT-TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTT
336 A-ATGGTC--CCT--TAA-GCC---TTCA---CGTG-AAGTT--T-C-AT-G--GC--AAGAC--
* * ** *
14592531 CACGTCAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACGA
377 GAC-TC--GTTT--T-------C-TAT--TTTTC-A-----T--GATTTTCAAAACTTTTTACGG
* * *
14592596 TTCAGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA-TGTGGTAGACGTGATCCTT
419 TTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTT
* * * *
14592660 GTATTTTTGTTGGCACGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACG
483 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
14592725 AATTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC
548 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
14592790 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGC
613 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * * * *
14592855 CATGTACCAGCATCCATTGCACATCATGTGCGTACACCCCCCGACCCCCCCGATCGTCGGAACCC
678 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCCT-GAAACCC
* * * * * *
14592920 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGTCGATGGTGCCCTGGCAAAGAAAAATGTGG
742 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
** ** * * ** *
14592985 C-CTGGGCACATGGTCGAGCCTAGCATGTGCTGTCATAACCCTCGGTCTGGTTCGATCTTAGACT
807 CAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
*
14593049 GGGAATGAACTCCATATGCTT
871 GGGAATGAACTCCGTATGCTT
* * * *
14593070 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* * * * * * *
14593135 CTAGAGGGGCGAGATGTGCAAGCTTGGGATCAGTCGGGTCCCCCTCT--GTG-TGCGGGT--T-C
66 CCAGAGGGGCGGGATGCGCAAG-TGGGGATCGGT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGC
** * * *** * ** * * * ** * * * * *
14593194 T-C-AGTCGGC-CAGAGGGGTGAGATGCATAAGTCAGGGATCGATTGGTCCCCCTCTGCGTGTTA
129 TGCGAAAC-CCTCTGTCCGTTCTGAT-C-TTAGACTGGGA---A-TGAACTCCGTATGC--CTAA
* * * * * * *** * * * *
14593256 TCGATCCTGCTATCGCAACCATTAGTTTG-GTC-TG-ATCTTA-GACTTGG--AGTGA-ACTCCG
185 GCCAACC-G--A-CGAAACGAGT-GGGCGAG-CGGGCA-C-TACG-C-CGGCCAGAGAGA--CGG
* * * * * * ** ** **
14593314 TATGC-CTAAGCCAATCGAT-GAAACGAGCGAACGGGCAGGCAGG--CGGGCACTACGTCGGCCA
238 GATGCGC-AAGCC-GTGGATCGATA-G-G-G---TGGTAGGTGGGTTTAGGCAC-A--TC-TTCA
* ***** * * * *
14593375 GAGAGACGGGATGCGCAA-GCCGTCGATCGATAGGGTGGTAGGTGGGTT-TAGGCACA-TC-TTC
291 TA-TTTTTGCATGC-CAATG-C--C-AT---T----T-TTA--TGGCTTGTA---A-ATTCATAC
* * * * *
14593436 ATAT-TTCTGCCTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-ACCT
336 A-ATGGTC--CCT--TAA-GCC---TTCA---CGTG-AAGTT--T-C-ATGG---C--AAGA-C-
* * * * ** *
14593499 TCACATGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCATGATTTTTTAAACTTTTTATG
377 -GAC-T--CGTTT--T-------CTA---TTTTT--------CATGATTTTCAAAACTTTTTACG
** * *
14593564 GTTCTGGATTTTTAAAAAAATTTTTT--GAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCC
418 GTTCAAGATTTTT--TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
**
14593627 TTGTA-TTTTGTTGGCATGTTC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
481 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
14593690 CCATTTG-AAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATC
546 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
14593754 TCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGG-AATATATAAG
611 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA-ATATAAG
* * * * * * * *
14593817 GGTCAAGTACCAGCAACCATCACACATCATATGCACGCAC-CACCCCCGACCACTCCGATCGTCG
675 GGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCACAC-CCCCCGGCCCCCCCGATCCT-G
* * * *
14593881 AAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGT-CCCCGATGAAGAAAA
736 AAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
** * * * * *
14593945 ATATGGCACCAGCAGATGCTCGAGCCCAGCATGGGCTACCGCAACCCTCGGTCTGGTCTGATCTT
801 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
* *
14594010 AGACTGGCAATGAACTCCGTATACTT
866 AGACTGGGAATGAACTCCGTATGCTT
* * * * * * ** *
14594036 ACACTGGGAATAAACCCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTTTGACGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* * *** * *
14594101 CCAGAGGGGTGGGATGCGCAAGTCAGGGATCCACCGGGTCCCCCTCTGTGTGCTGCTGATCCTGC
66 CCAGAGGGGCGGGATGCGCAAGT-GGGGAT-CGGTGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * * * * *
14594166 TGCCACAACCCTC-GATCTGGTCTGATCCTAGGCGGGGAATGAACTCCATACGCCTAAGCCAACC
129 TGCGA-AACCCTCTG-TCCGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
14594230 AACAAAACGAGCGGGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
192 GACGAAACGA----GTGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * **
14594295 GATCGATAGGGTGGTAGGTGGGTGTAGGCACATATTTATATTTTTGTGTGCCAATGCCATTTTTA
253 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTA
* * * *
14594360 TGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGACGTTTCATGGCTAGATGACTCG
318 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
14594425 TTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAG
383 TTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAG
* * *
14594490 GAGTTTTGACCCCAAACTTGGTAGACGCGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATT
448 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATT
* * * *
14594555 TAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAAACA
512 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
14594620 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTC
577 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
14594684 GAGGTTTGATGAGGGATAGTGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACACCATGT
642 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
*** * *
14594749 GCGCACACCCCCC-G----ATTG--CC-GAAACCCTAATGCTGTCGGTCAGGTTCTCCGACGATG
707 GCGCACACCCCCCGGCCCCCCCGATCCTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
** * * * * * *
14594806 CTCCGGTGATGGGGCCCCGACGAAGAAACATGCGGTACCAACGCATGCCCAAGCCCAGCATGTGC
772 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
14594871 TATCC-CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
837 T-GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
14594926 AGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* * * * *
14594991 CCAGAGGGGCAGGATGGGCAAGCTGGGGATCGGTTGGGTCCCCTTC-GCGTGCTACCAATCCTGC
66 CCAGAGGGGCGGGATGCGCAAG-TGGGGATCGG-TGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * * *
14595055 TGTTGCAACCCTCAGCCCAG-TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACT
129 TG-CGAAACCCTCTGTCC-GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
14595119 GACGAAATGAGTGGGCG-GACGAGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
192 GACGAAACGAGTGGGCGAG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
14595183 CGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTGTATGCAAATGCCATTTTTATGG
256 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
*
14595248 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTT
321 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * * *
14595313 TCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
386 TCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * *
14595378 TTTTGGCCCCAAACTTGGTAAACATAATCCTTGTACTTTTGTTGGCATGCACCAAAAAATTCAGC
451 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
14595443 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
516 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
14595508 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGG
581 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
14595573 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAACATGTGTGC
646 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * **
14595638 ACACCCCCCGG-CCCCCTGATCGCTGGAACCCCAGTGCCGTCGGTTAGGTTCTCTGGTGATGCTC
711 ACACCCCCCGGCCCCCCCGATC-CTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
** * * * *
14595702 CGGTGATGGTACCCCGACGAAGAAACATGCGGTACCAGCACATGCCCGAGCCCAGCATGTGCTAT
775 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-G
* * *
14595767 CC-CAACCCTCGGT-TCGATCCAATCTTAGACTGGGAATGAACTCCGTATGGTT
839 CCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
14595819 ACACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
** * * * * * *
14595884 CCAGAGGGTTGGGATGCACAAGCCGGGGATCGATCGGGTCTCCCTCTGCGTGCTGCCAATCTTGC
66 CCAGAGGGGCGGGATGCGCAAG-TGGGGATCGGT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * ** * *
14595949 TACCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCAACTG
129 T-GCGAAACCCTCTGTCCGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
14596014 ACGAAACGAGCCGGCTGGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
193 ACGAAACGA----G-T---GGGCGAGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
14596079 AGCCGTGGATCAATAGGGTGGTTGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCC
246 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
* *
14596144 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGA
311 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14596209 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTT
376 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
* * *
14596274 TCGGAAGGATTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATATTTT-TTGGCATGCATAA
441 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAA
*
14596338 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATT
505 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14596403 TCAGACACTTTAATGGCTACTGGCAGCAAACGTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
570 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
14596468 AGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
635 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
14596533 AACATGTGCGCACACCCCCCCCGG-CCCCCTGAT-CTCCAGAACCCCAGTGCCG-CTGATCAGGT
700 ATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCCT-GA-AACCCCAATGCCGTC-GGTCAGGT
* * *
14596595 TCTCCGACGATGCTCTGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCAGATGCCCGAG
760 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
14596660 CCTAGCATGTGCTGTCACAA--C-C---C---T-CG------G--T----ATGAACTCTGTATGC
825 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14596703 TT
890 TT
* * *
14596705 AGACTGGGAATGAACTCTGTATGCCTAAGT-------C-AAACGAGTGTACGGGTGCTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
* * * * * *
14596762 CCAGA-GGGCTGAGATGTGCAAGCAGGGGATCGATCGGGTCTCCCTCTGTGTGCTGCCGATCCTG
66 CCAGAGGGGC-GGGATGCGCAAG-TGGGGATCGGT-GGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * * * *
14596826 CTACTGTAACCCTCAT-TCTGGTT-TGTTCTTAGACTGGGAATTAACTCTGTATGCCTAAGCTAA
128 CTGC-GAAACCCTC-TGTC-CGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * *
14596889 CCGATGAAACGAGTGGGCTGGCGGACGGGCGGGTGGGCATTACGTTGGCCAGCGAGAAGAGATGC
190 CCGACGAAACGAGT--G--GGC-GA---GC----GGGCACTACGCCGGCCAGAGAGACGGGATGC
*
14596954 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
243 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAT
* * *
14597019 GCCAATTTTATGGCTTGTAAATTCATCCAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
308 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** *
14597084 AGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
373 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATT
* * * * * * *
14597149 TTTTCGAAACGAGTTTTGGCCCCAAACGTGGCAGACGTAATCCTTGTATTTTTGCTGGCATGCAT
438 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
14597214 AAAAAAATTCAGCTAAACACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
503 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
14597279 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTGAAATGCTCTTTAAGGGGGTG
568 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
14597344 TGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
633 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** *
14597409 ACATCATGTGCGCGCACCCCCCGGCCCCCTTGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTC
698 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-CTGAAACCCCAATGCCGTCGGTCAGGTTC
** * * * * * **
14597474 TCCGGTGAGGCTTCGACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGGTCGAGCC
762 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
14597539 CAGCAAT-TGCTGCCGCAACCCTCGGTC-GATCGGATCTTAGACTGGGAATAAACTCTGCATGCT
827 CAGC-ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
14597602 T
891 T
* ** * *
14597603 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGTGGGCGGGCG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCG
14597659 GGCACTACGC
Statistics
Matches: 7707, Mismatches: 1040, Indels: 760
0.81 0.11 0.08
Matches are distributed among these distances:
869 2 0.00
870 1 0.00
872 121 0.02
873 451 0.06
874 4 0.00
875 3 0.00
876 11 0.00
877 270 0.04
878 607 0.08
879 12 0.00
880 4 0.00
883 2 0.00
884 132 0.02
885 347 0.05
886 48 0.01
887 3 0.00
888 10 0.00
889 123 0.02
890 179 0.02
891 8 0.00
892 20 0.00
893 252 0.03
894 325 0.04
895 76 0.01
896 472 0.06
897 27 0.00
898 249 0.03
899 101 0.01
900 122 0.02
901 402 0.05
902 200 0.03
903 777 0.10
904 155 0.02
905 2 0.00
906 489 0.06
907 15 0.00
908 106 0.01
911 2 0.00
914 2 0.00
916 4 0.00
917 1 0.00
918 3 0.00
919 4 0.00
920 5 0.00
921 5 0.00
922 7 0.00
923 4 0.00
925 2 0.00
926 7 0.00
927 1 0.00
928 1 0.00
929 3 0.00
930 3 0.00
931 3 0.00
932 2 0.00
933 4 0.00
934 3 0.00
935 1 0.00
936 1 0.00
937 5 0.00
938 3 0.00
940 5 0.00
941 5 0.00
942 8 0.00
943 5 0.00
944 4 0.00
945 4 0.00
946 1 0.00
947 4 0.00
949 1 0.00
950 1 0.00
953 2 0.00
954 1 0.00
956 5 0.00
957 7 0.00
958 2 0.00
959 5 0.00
960 8 0.00
961 1 0.00
962 5 0.00
963 7 0.00
964 7 0.00
965 47 0.01
966 297 0.04
967 741 0.10
968 88 0.01
969 196 0.03
970 5 0.00
971 14 0.00
972 5 0.00
973 8 0.00
974 4 0.00
975 8 0.00
976 1 0.00
977 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGG
CCAGAGGGGCGGGATGCGCAAGTGGGGATCGGTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
CGAAACCCTCTGTCCGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGTGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCCCGATCCTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
Found at i:14592110 original size:26 final size:26
Alignment explanation
Indices: 14592074--14592126 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14592064 TTGGTCCGAT
*
14592074 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14592100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14592126 C
1 C
14592127 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14593077 original size:26 final size:26
Alignment explanation
Indices: 14593041--14593093 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14593031 CTGGTTCGAT
14593041 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14593067 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14593093 C
1 C
14593094 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14593578 original size:967 final size:963
Alignment explanation
Indices: 14591299--14594153 Score: 3938
Period size: 967 Copynumber: 3.0 Consensus size: 963
14591289 GCGCAAGTGG
* * * * ** ** * * * * *
14591299 GGGATCGGTTGGTTCCCCTCTACGTGATGTCGATCCTGCTAGGGAAACCCTCTGTCCGTTCTGAT
1 GGGATCGATTGGTCCCCCTCTGCGTGTTACCGATCCTGCTACCGCAACCATCAGTCTGGTCTGAT
* * * * *
14591364 CTTAGACTGGGAATGAACTCGGTATGCTTAAGCCAACCGACGAAACGA--GTGGGC-G-A-GCGG
66 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGCGGGCGGCAGGCGG
* *
14591424 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTC
131 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
14591489 GGCACATCTTCATATTT-TTCCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAGTGGTC
196 GGCACATCTTCATATTTCTACC-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
14591553 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATGTTTCACAATTTTAAAA
260 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * * *
14591618 ACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCACACTTGGTAGT
325 ACTTTTTACGATTCAGGATTTTTTAAAATTTTTT-TGAAGGAGTTTTGGCCCCA-AATTGGTAGA
* *
14591683 CGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGA
388 CGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14591748 TTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTT
453 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTT
* *
14591813 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGTTGAGGGATAGGGCGCCA
518 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG-GCCA
* * *
14591878 ATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
582 ATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATC
14591943 GTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGTCGATGGTGCCCTGGCGAAG
647 GTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGTCGATGGTGCCCTGGCGAAG
** * *
14592008 AAAAATACAGCCTGGGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTTTGGTCCGA
712 AAAAATATGGCCTGGGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTTCGA
*
14592073 TCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
777 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* *
14592138 CACGAAACGAGCGTGCGGGTGCTCAACCGACTAGAGGGGCAGGATGCGTAAGCTGGGGATCAGCC
842 CACGAAACGAGCGTGCGGGCGCTCAACCGACTAGAGGGGCAGGATGCGCAAGCTGGGGATCAGCC
*
14592203 GGGTCCCCCTCTGTGTGCAGGTTCTCAGTCGGCCAGAGGGGCGAGATGCATAAGCCG
907 GGGTCCCCCTCTGTGTGCAGGTTCTCAGTCGGCCAGAGGGGCGAGATGCATAAGCCA
* * * *
14592260 GGGATCGGTTGGTCCCCTTCTGCGTGTTGCCGATCCTGCTACCGTAACCATCAGTCTGGTCTGAT
1 GGGATCGATTGGTCCCCCTCTGCGTGTTACCGATCCTGCTACCGCAACCATCAGTCTGGTCTGAT
* *
14592325 CTTAAAC-TGAGAATGAACT-CGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGACGGGC-G
66 CTTAGACTTG-GAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGC--GCGGGC-GGCAG
* * *
14592387 GCCGGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAGCCTTGGATCGATA-GGTGGTAGGTGG
127 G-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14592451 GTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
191 GTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
14592516 AGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTTACGATTTT
256 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
14592581 TGAAACTTTTTACGATTCAGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAATGTGG
321 TAAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAAAT-TGG
* * * *
14592646 TAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTAC
384 TAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
14592711 AAGATTTTGTGACGAATTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAA
449 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
14592776 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGG
514 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG-GG
* * * *
14592841 GCCAATATAAGGGCCATGTACCAGCATCCATTGCACATCATGTGCGTACACCCCCCGACCCCCCC
578 GCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCGACCCCCCC
*
14592906 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGTCGATGGTGCCCTGGC
643 GATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGTCGATGGTGCCCTGGC
* * * * **
14592971 AAAGAAAAATGTGGCCTGGGCACATGGTCGAGCCTAGCATGTGCTGTCATAACCCTCGGTCTGGT
708 GAAGAAAAATATGGCCTGGGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGT
14593036 TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
773 TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
14593101 AACCCACGAAACGAGCGTACGGGCGCTCAACCGACTAGAGGGGC-GAGATGTGCAAGCTTGGGAT
838 AACCCACGAAACGAGCGTGCGGGCGCTCAACCGACTAGAGGGGCAG-GATGCGCAAGCTGGGGAT
* * * *
14593165 CAGTCGGGTCCCCCTCTGTGTGCGGGTTCTCAGTCGGCCAGAGGGGTGAGATGCATAAGTCA
902 CAGCCGGGTCCCCCTCTGTGTGCAGGTTCTCAGTCGGCCAGAGGGGCGAGATGCATAAGCCA
* * * *
14593227 GGGATCGATTGGTCCCCCTCTGCGTGTTATCGATCCTGCTATCGCAACCATTAGTTTGGTCTGAT
1 GGGATCGATTGGTCCCCCTCTGCGTGTTACCGATCCTGCTACCGCAACCATCAGTCTGGTCTGAT
* *
14593292 CTTAGACTTGGAGTGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGAACGGGCAGGCAGG
66 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCG--CGGGC-GGCAGG
* *
14593357 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGT
128 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
14593422 TTAGGCACATCTTCATATTTCTGCCTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
193 TTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * * *
14593487 TCCCTTAAACCTTCACATGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCATGATTTTTT
258 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* * * * * *
14593552 AAACTTTTTATGGTTCTGGATTTTTAAAAAAATTTTTTGAAGGAGTTTTGGCCCCAAACTAGGTA
323 AAACTTTTTACGATTCAGGATTTTT-TAAAATTTTTTTGAAGGAGTTTTGGCCCCAAA-TTGGTA
*
14593617 GACGTGATCCTTGTA-TTTTGTTGGCATGTTC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAA
386 GACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
14593680 GATTTTGTGACCATTTG-AAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
451 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14593744 TTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG-A
516 TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCC
* * * * *
14593808 ATATATAAGGGTCAAGTACCAGCAACCATCACACATCATATGCACGCAC-CACCCCCGACCACTC
581 A-ATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTG--CGCACAC-CCCCCGACCCCCC
* * * *
14593872 CGATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGAT-GATGGT-CCCCG
642 CGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCG-TCGATGGTGCCCTG
** ** * * **
14593935 ATGAAGAAAAATATGGCAC-CAGCAGATGCTCGAGCCCAGCATGGGCTACCGCAACCCTCGGTCT
706 GCGAAGAAAAATATGGC-CTGGGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCT
* * * * * *
14593999 GG-TCTGATCTTAGACTGGCAATGAACTCCGTATACTTACACTGGGAATAAACCCCGTATGCCTA
770 GGTTC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** * * ** *
14594063 AGTCAACCCATGAAATGAGCGTGCGGGCGCTTTGA-CGGCCAGAGGGGTGGGATGCGCAAG-TCA
834 AGTCAACCCACGAAACGAGCGTGCGGGCGC-TCAACCGACTAGAGGGGCAGGATGCGCAAGCT-G
14594126 GGGATCCA-CCGGGTCCCCCTCTGTGTGC
897 GGGAT-CAGCCGGGTCCCCCTCTGTGTGC
14594154 TGCTGATCCT
Statistics
Matches: 1675, Mismatches: 185, Indels: 63
0.87 0.10 0.03
Matches are distributed among these distances:
960 26 0.02
961 68 0.04
964 5 0.00
965 40 0.02
966 284 0.17
967 902 0.54
968 147 0.09
969 193 0.12
970 10 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (963 bp):
GGGATCGATTGGTCCCCCTCTGCGTGTTACCGATCCTGCTACCGCAACCATCAGTCTGGTCTGAT
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGCGGGCGGCAGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
CTTTTTACGATTCAGGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAATTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCAATAT
AAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCG
GAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGTCGATGGTGCCCTGGCGAAGAAAA
ATATGGCCTGGGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTTCGATCTT
AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAACCGACTAGAGGGGCAGGATGCGCAAGCTGGGGATCAGCCGGGT
CCCCCTCTGTGTGCAGGTTCTCAGTCGGCCAGAGGGGCGAGATGCATAAGCCA
Found at i:14594055 original size:26 final size:26
Alignment explanation
Indices: 14594007--14594057 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14593997 CTGGTCTGAT
* * *
14594007 CTTAGACTGGCAATGAACTCCGTATA
1 CTTACACTGGCAATAAACCCCGTATA
*
14594033 CTTACACTGGGAATAAACCCCGTAT
1 CTTACACTGGCAATAAACCCCGTAT
14594058 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
CTTACACTGGCAATAAACCCCGTATA
Found at i:14594926 original size:26 final size:26
Alignment explanation
Indices: 14594897--14594948 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14594887 CCGATCCAAT
14594897 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14594923 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14594949 ACTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14597626 original size:26 final size:26
Alignment explanation
Indices: 14597574--14597626 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14597564 TCGATCGGAT
*
14597574 CTTAGACTGGGAATAAACTCTGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
* *
14597600 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGCATG
14597626 C
1 C
14597627 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:14599134 original size:710 final size:709
Alignment explanation
Indices: 14596914--14599727 Score: 3712
Period size: 734 Copynumber: 4.0 Consensus size: 709
14596904 GGCTGGCGGA
* * ** * * *
14596914 CGGGCGGGTGGGCATTACGTTGGCCAGCGAGAAGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
1 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
14596979 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTTGTAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * ** *
14597044 TCCAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAT
131 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
* *
14597109 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAACGAGTTTTGGCCCCAA
196 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * * * * *
14597174 ACGTGGCAGACGTAATCCTTGTATTTTTGCTGGCATGCATAAAAAAATTCAGCTAAACACTCAAA
261 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
14597239 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
326 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * *
14597304 CAGCAAACCTCTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGA
391 CAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
14597369 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCGGC
456 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCACACCCCCCGGC
** * * *
14597434 CCCCTTGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAGGCTTCGACGATGGTGC
521 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC-TCGACGATGGTGC
* * * * *
14597499 CCCGGCAAAGAAAAATGTGGCACCAGCACATGGTCGAGCCCAGCAAT-TGCTGCCGCAACCCTCG
585 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC-ATGTGCTGCCG-AAACC-C-
*
14597563 GTCGATCGGATCTTAGACTGGGAATAAACTCTGCATGCTTAGACTGGGAATGAACTCCGTATGCC
646 -TCGATC----C----A----G-------TCTG-AT-CTTAGACTGGGAATGAACTCCATATGCC
*
14597628 TAAGCCAACTGATGAAACGAG
689 TAAGCCAACCGATGAAACGAG
* * * *
14597649 TGGGCGGGCGGGCACTACGCAGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGA-AGGGTGGT
1 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* ** *
14597713 AGGTGGGTTTAGGCACATCTTCATTTTTCTATGTGCCAATACCATTTTTATGGCTTGTAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
14597778 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
131 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
** * * ** *
14597843 GATTTTCAAAACTTTTTACGGTTCGGGATTTTTAAAAAAATTTTCAGAAGGAGTTTTGGCCCCAA
196 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
14597908 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAAGTCGAA
261 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
14597973 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
326 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
14598038 CAGCAAACCTATAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
391 CAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
14598103 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC-CCCCCCGGC
456 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCACACCCCCCGGC
* * *
14598167 ACCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAAGG-TCT-C--CG--G-T----GATGGTG-
521 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC-AGGTTCTCCGGCGATGCTCGACGATGGTGC
* * * * * * *
14598220 CCCTGGGCAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGATGCCGTAACCCTC-
585 CCCAGCG-AAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACCCTCG
* * * *
14598284 AGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATAAGCCTGAGCCAACCGATGAAACGAG
649 A-TCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAG
** *
14598346 CGGGCAAGCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
1 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
14598411 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
14598476 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTCTTTTTCAT
131 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
* * * *
14598541 GATTTTTGAAACTTTTT-GGAGTTCGAGATTTTTTAAATTTTTTTTGGAAGGAGTTTTTGCCCCA
196 GATTTTTGAAACTTTTTACG-GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
14598605 AACTTAGTAGACGTGATCCTTGTCTTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTTGA
260 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
14598669 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
325 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
14598734 ACAACAAACCTGTAAAATCTAAAATGCTCTTTAAAGAGG-GTGAGTTCTCAAGGTTTGATGGGGG
390 GCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGG
*
14598798 ATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCAAATCATGTGCGCACACGCCGCCC
455 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCACAC-CC-CCC
* * * * * *
14598863 GACCCCCCCGATCACCGGAACCCTAATGCCGCCGGTCAGGTCCTCTGGCGATGCTCCGACGATGG
518 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CGACGATGG
14598928 TGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACCCT
582 TGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACCCT
* *
14598993 CGATCCAGTCTGATCTTAAACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAG
647 CGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAG
* *
14599056 CGGGCGGGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGT
1 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * **
14599121 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGTCAGTGCCATTTTTATTACTTGTAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
14599186 CACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-----G---A-T-GTTTTCTATTTTTAAC
131 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
* * * *
14599241 GATTTTTGAAACTTTTTGCGATTC-AGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGCCCCA
196 GATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
14599305 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTCGA
260 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
14599370 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
325 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
14599435 GCAGTAAACCTGTAAAATCTCAAAA-GCTCTTT-AGGAGGGTGTCAGTTCTCGAGGTTTGATGAG
390 GCAGCAAACCTGTAAAATCT-AAAATGCTCTTTAAGGA-GGTGTGAGTTCTCAAGGTTTGATGAG
* *
14599498 GGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCG-AACATCATGTGCGCACACCCCT
453 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAA-ATCATGTGCGCACACCCCC
* * ** *
14599562 CGGCCCCCCCCGATCGTCGGATCCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCTAGCGAT
517 CGG-CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCGA-CGAT
* * * *
14599627 GGTGCCCCAGCGAAGAAAAATTCAGCACCAGC-C---C-C-AGCCCAGCATGTGCTGTCGCAACC
580 GGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACC
* * * *
14599686 CTCGGT-CGGTCCT-ATCTTAGACTGGGAATGACCTCCGTATGC
645 CTCGATCCAGT-CTGATCTTAGACTGGGAATGAACTCCATATGC
14599728 TTAGACTGGG
Statistics
Matches: 1860, Mismatches: 186, Indels: 107
0.86 0.09 0.05
Matches are distributed among these distances:
694 29 0.02
695 29 0.02
696 78 0.04
697 207 0.11
698 236 0.13
699 40 0.02
700 122 0.07
701 188 0.10
702 82 0.04
704 1 0.00
705 2 0.00
706 1 0.00
710 265 0.14
711 6 0.00
714 1 0.00
717 1 0.00
718 4 0.00
720 1 0.00
721 9 0.00
722 46 0.02
726 1 0.00
728 1 0.00
730 1 0.00
732 1 0.00
733 40 0.02
734 420 0.23
735 48 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (709 bp):
CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCACACCCCCCGGC
CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCGACGATGGTGCC
CCAGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGAAACCCTCGAT
CCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAG
Found at i:14599737 original size:26 final size:26
Alignment explanation
Indices: 14599701--14599753 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14599691 TCGGTCCTAT
*
14599701 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14599727 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14599753 C
1 C
14599754 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14600621 original size:26 final size:26
Alignment explanation
Indices: 14600585--14600637 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14600575 CTCGTCCTAT
14600585 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14600611 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14600637 C
1 C
14600638 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14601515 original size:26 final size:26
Alignment explanation
Indices: 14601479--14601531 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14601469 CTAGTCCTAT
14601479 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14601505 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14601531 C
1 C
14601532 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14603369 original size:26 final size:26
Alignment explanation
Indices: 14603333--14603384 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14603323 CTGATCTTAG
*
14603333 ACTGTGAATGAACTTCATATGCCTAA
1 ACTGGGAATGAACTTCATATGCCTAA
*
14603359 ACTGGGAATGAACTTCGTATGCCTAA
1 ACTGGGAATGAACTTCATATGCCTAA
14603385 GTTAACCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (26 bp):
ACTGGGAATGAACTTCATATGCCTAA
Found at i:14604259 original size:26 final size:26
Alignment explanation
Indices: 14604230--14604282 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14604220 CTGGTCCGAT
14604230 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
* *
14604256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
14604282 C
1 C
14604283 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:14604428 original size:902 final size:897
Alignment explanation
Indices: 14598987--14608615 Score: 10799
Period size: 902 Copynumber: 10.8 Consensus size: 897
14598977 GTGCTGCCGA
* * * * * *
14598987 AACCCTCGATCCAGTCTGATCTTAAACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAA
* * *
14599052 CG-A---GCGGGCGGGCGG-GCACTACGCCGGCCTGAGAGACGGGATGCGCAAGCCGTCGATCGA
66 CGAACGGGCGGGCGGGCGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * **
14599112 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGTCAGTGCCATTTTTATTACTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
14599177 GTAAATTCACACGATGGTCCCTTAAGCCTTCACGTGAAG-TT--T--C---ATGA-T-GTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
* * * *
14599232 ATTTTTAACGATTTTTGAAACTTTTTGCGATTC-AGGATTTTTTAAAATTTTTTTGGAAGAAGTT
261 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
14599296 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
14599361 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
14599426 TGGCTACTGGCAGTAAACCTGTAAAATCTCAAAAGCTCTTT-AGGAGGGTGTCAGTTCTCGAGGT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGGTGTGAGTTCTCGAGGT
* *
14599490 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGAACATCATGTGCGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
14599555 CACCCCTCGGCCCCCCCCGATCGTCGGATCCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTC
584 CACCCCCCGG--CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
** * * *
14599620 TAGCGATGGTGCCCCAGCGAAGAAAAATTCAGCACCAG--C---CCC-AGCCCAGCATGTGCTGT
647 CGGCGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
14599679 CGCAACCCTCGGTC-GGTCCTATCTTAGACTGGGAATGACCTCCGTATGCTTAGACTGGGAATGA
711 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
14599743 ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCAGCAAGAAGGGCGAG
776 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGG
* * * * * * ** *
14599808 AT-TAGCAAGCCAGGGATCGACCGGGTCCCCCTCTGTGTGCCACCGATCCTACTACCGC
841 ATGCA-CAAGCCGGGGATCGGCC-GGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCAC
* ** *
14599866 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTTTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAA
** * *
14599931 CG-A---GCGGGCGGGCGG-GCACTATATCGGCCAGAGAGACGGCATACGCAAGCCGTGGATCGA
66 CGAACGGGCGGGCGGGCGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * * *
14599991 TAGGGTGGTTGGTGGGTTTATGCACATCTTCATATTTTTACGTGCCAGTGCCATATTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
14600056 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-----GATG--T--TTTT-T
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
* * *
14600111 ATTTTTAACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTTGG-AGAGAGTT
261 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG-GAGTT
* * *
14600175 TTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCGTGCAC-AAAAAATTTAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
14600239 AAAACTCAAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * *
14600304 TGGCTACTGGTAGCAAACTTGTAAAATCTCAAACGCTCTTTAAGAGGGTGTGAGTTCTCGAGGAT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
14600369 TGATGAGGGAT-GAGGGGCCAATAGAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCA
520 TGATGAGGGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * **
14600433 CACCCCCCTGCCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
584 CACCCCCC-G-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* **
14600498 CGGTGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCC-AGCCCAGCATGTGCTGC
647 CGGCGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
14600562 CGCAACCCTCGATCTCGTCCTATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
711 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
14600627 ACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGTCGGCAAGAAGGGTGGG
776 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGG
* ** * ** *
14600692 AT-TAGCAAGCTAGGGATCGGCCGGCTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCAC
841 ATGCA-CAAGCCGGGGATCGGCCGG-TCCCCCTCTGCGTGCTACCGATCCTGCTGTCAC
* * * **
14600750 AACCCTTGGTCTGGTCCGATCTTAAACTGGGAATGAACTCTTTATGCCTAAGCC-AACGGACGAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAAC-GACGAA
** * ** *
14600814 ACGAGTGGGCGGGCGGGCGGGTGGGCACTACGTCGGCTTGAGAGACGGGATGCGCAAGCCGTAGA
65 ACGAACGGGCGGGCGGGC--G-GCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
14600879 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* *
14600944 GCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TT--T--C---ATGA--CATT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
* * * * * * *
14600999 TTCTATTTTTAACAAGTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGAA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* **
14601064 GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
14601129 CAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGT-AGACACT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACT
*
14601193 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGA
451 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
14601258 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
516 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * **
14601323 GCACACCCACCCGGCCCCCCTGATCGTCGGAACCTCAATGTCGCCGGTCAGGTTCTCCGGTGATG
581 GCACACCC-CCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * *
14601388 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCCACCCCAGCATGTGC
644 CTCCGGCGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
14601453 TACCACAACCCTCGGTCTAGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
708 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * * *
14601518 TGCACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGACAAGAGGGGC
773 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGC
* ** * * * * *
14601583 GGGAT-TAGCAAGCTAGGGACCGGTCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTG-CTGC
838 GGGATGCA-CAAGCCGGGGATCGG-CCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGTC-AC
* * * * *
14601644 AACCCTTGATCCGGTCCGATCTTAGATTGGGAATGTACTCC-TCATGCCTAAGCC-AACTAACGA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT-ATGCCTAAGCCAAAC-GACGA
* * * * * * * * *
14601707 AACGAGCGGGTGGACGGGCAGGCGGGCACTACGTCGACTAGGGAGATGGGATGCGCAAGCCATTG
64 AACGAACGGGCGGGCGGGC-GGC--GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
14601772 ATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTTCATATTTTTGCGTGCCAATACCATTTTTA
126 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TTCATATTTCTGCGTGCCAATGCCATTTTTA
* * *
14601837 TGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCA
190 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
* ** * *
14601902 TTTTCTATTTTTCACGATTTTGGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGAAAG
255 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * *
14601967 GAGTTTTGGCCCTAGATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACCAAAAAAA-T
320 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATT
* * *
14602031 CAGCTAAAAAATCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATCTCAGACA
384 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
14602096 CTTTAATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGACG-TCT
449 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA-GTTCT
* * * **
14602160 CGAGGTTTGATGAGGGATAGGGGGCTAGTGTAAGGGCCAAGTACCAGCACCCATCGCATGTCATG
513 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
14602225 TGCGCACACCTACCCAGCCCTTCCGATCGCGGGAACCCCAACGCCGTCGGTCAGG-T-T----C-
578 TGCGCACACC-CCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * * * * ***
14602283 -T--T-CGGCGATAGTACCTCGGTGAAGAAAAATACGGCACCAGCACATGTCCCCATTTCAGACA
641 ATGCTCCGGCGATGGTGCC-CCGCGAAGAAAAATGCGGCACCAGCACATG-CCCGAGCCCAG-CA
* * * ** * * * * **
14602344 CTTTAATGGCTACTGGCAGTAAACT-TGTAAAAT-CTCCAATGCTCTTTAAGA--GGGTGTG-AC
703 ---T-GT-GCTGC-CGCA--ACCCTCGGT---CTGGTCC---GATC-TT-AGACTGGGAATGAAC
* * * ** *
14602404 GTCTCG-A-GGTTTGA-TGAGGGATAGGGGGCT-AGTATAAGGGCC-AAGTACCAGCACCCATCG
752 -TC-CGTATGCTTAGACT--GGGA-A-TGAACTCCGTAT----GCCTAAGT--CA--ACCCA-CG
* * * * * * * ** * ** * * *
14602464 -CAC-ATCAT--GTGCGCACACCCAATGCC-GTCGGTCAGGTTCTCCGACAATGCTCCGGAGATG
802 AAACGAGCGTGCGGGCGCTCAGCC--GGCCAGAAGGGC-GG-GATGC-ACAA-G--CCGGGGATC
* * * * **
14602524 GTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCCGAGC--CCAGCAT-GTGCTGTCGT
859 G-G---C--C---G------GT--C-CC-CCTC-TG--CGTGCTACC-G-ATCCTGCTGTCAC
* * *
14602584 AACCATCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACTGACGAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAAC-GACGAA
* *
14602648 ACGAACGGGGGGGCGGGGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAA
65 ACGAAC----GGGC---GGGCGGGC-GGC--GCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
*
14602713 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
120 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * **
14602778 TTTTATGGCTTGTAAATTTATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGAAAAGATG
185 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
* ** * * * *
14602843 ACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACAGTTCGGGATTTTTTAAAATTTTTTC
250 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
14602908 GAAACGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
315 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
14602973 AAATCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
380 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14603038 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGG
445 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14603103 TCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATA
510 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
14603168 ATGTGCACACACCCCCTGGCCCCCCGATCGCTGGAACCTCAATGCCGTCGGTCAAGTACTCCGGC
575 ATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
** * *
14603233 GATGCTCCGGCGATGGTGCCCCAATGAAGAAATATGTGGCACCAGCACATGCCCGAGCCCAGCAT
640 GATGCTCCGGCGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * * * * * * *
14603298 ATGTTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGTGAATGAACTTCATATGCCTAAACTG
704 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
14603363 GGAATGAACTTCGTATGCCTAAGTTAACCCATGAAACAAGCGTGCGGGCGCCCAGCCGGCCAGAG
769 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAA
* * * * *
14603428 GGGTC-GGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCA
834 GGG-CGGGATGCACAAGCCGGGGATCGG-CCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCA
14603492 C
897 C
* * * * * *
14603493 AACCATCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCGATCGAGGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAA
* * * *
14603558 CGAACGGGCGGGCAGGCGGACAAGCACTACGCCGGCCAGCGAGACGGGATGTGCAAGCCGTGGAT
66 CGAACGGGCGGGCGGGCGG-C--GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
14603623 CGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
128 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* *
14603688 CTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTT
193 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
* * *
14603753 TCTATTTTTCACGATTTTTGAAACTTTTTGTGTTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
258 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
* *
14603818 TTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATATTTT-TTGGCATGCACAAAAAATTTCAG
323 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAG
14603882 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * **
14603947 TAACGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTAAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
14604012 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCTGCACCCATCGCACATCATGTGCG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * ** * * *
14604077 CACACCCCCCGGCCCCCCGATCGCCGTAACCCTAGTGCTACCAGTCAAGTTCTCCGGCGATGCTC
582 CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * * *
14604142 CGGCGATGGTGCCCCTGGGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAACATGTGCTAC
647 CGGCGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
14604207 CGTAACCCTGGGTCTGGTCCGATCTTAGACTAGAAATGAACTCCGTATGCTTAGACTGGGAATGA
711 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
14604272 ACTCCGTATGCCAAAGTCAACACATGAAACGAGCGTGCGGGGGCTCAGCCGGCCAG-AGGGACGG
776 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGG-CGG
* * * *
14604336 GATGCACACGCCGGGGATCGGCCGAGTCCCCCTCTGCATGCTGCCAATCCTGCTGTCAC
840 GATGCACAAGCCGGGGATCGGCCG-GTCCCCCTCTGCGTGCTACCGATCCTGCTGTCAC
* * * * *
14604395 AACCCTCAGTCCGGTCGGATCTCAGACTGGGAATGAACTCCGTATGCCTAAGGCAATCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAA
* * * *
14604460 CGAGCGGGTGGACGGACGGGCAGACACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 CGAACGGGCGGGCGGGC-GGC-G-CACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
14604524 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* * * *
14604589 GCTTGTAAATTCATAAAATGGTCCCTTAATCCTTCACGTCAAGTTTCATGGCAAGACGACTTC-T
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC-TCGT
* ** * * *
14604653 CTTT-TATTTTTCACAATTTTCAAAACTTTTTGAGTTTCGAGATTTTTTACAATTTTTTCGGAAG
256 -TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * *
14604717 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCATAAAAAAA-TC
320 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
14604781 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACAT
385 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
14604846 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCG
450 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
14604911 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACACCATGTG
515 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * * *
14604976 CACACACCCCCCCGGCCCCCCCGATTGCCGGAACCCTAATGCCGCCGGTTACGTTTTTCGACCAT
580 CGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * * * *
14605041 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCTCAAGCCCAGCATGTG
643 GCTCCGGCGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * *
14605106 CTGTAGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
707 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
14605171 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGCCAGCCAGAAGGG
772 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGG
* * * * *
14605236 CGGGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTACATGCTACCGATCCTACTATCAC
837 CGGGATGCACAAGCCGGGGATCGGCCG-GTCCCCCTCTGCGTGCTACCGATCCTGCTGTCAC
* * * * *
14605298 AACCCTCGGTCCGGTCCAATCTTAGACTAGCAATGAACTCCGTATGCCTAACCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAA
* * * *
14605363 CG-A-------GCGGGCGG-GCACTACGTCGGCCAAAGAGACGGGATGCGCAAGTCATGGATCAA
66 CGAACGGGCGGGCGGGCGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
14605419 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TAGCGTGCCAATGCCATTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCAATGCCATTTTTATGGCT
* * *
14605483 TGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTT
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
* * *
14605548 TATTTTTCAAGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTT
260 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * * ** * *
14605613 TTGGCCCCACACTCGGTAGACATGATTCTCATATTTTTCTTGGCATGCACAAAAAAATTCAGGTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
14605678 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GAGCACTTTA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTA
* *
14605742 ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
14605807 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCCCCCATCGCACATCATGTGCGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
14605872 CAGCCCCCGGCCCCGCCGATCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAGGCTCC
584 CACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * *
14605937 GACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC
648 GGCGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* ** * *
14606002 GCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGTAATGAA
712 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * ** * *
14606067 CTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTATGGGCGCTCAGCCGACCA-AAGGGGAGGG
777 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAA-GGGCGGG
* * * ** ** *
14606131 ATTCGCAAGCCGTGGATCATCCTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGTCAC
841 ATGCACAAGCCGGGGATCGGCC-GGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCAC
* ** * * * * *
14606189 AACCCTCGATTTGGTTCAATCTTAGTCTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAA
* * * *
14606254 TGAACGGGCGGGCGGGCGGGGGGGGGCACTACGTTGGCCAGAGAGACGGGATGCGAAAGCCGTGG
66 CGAACGGGCGGGCGGGC-----GGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
14606319 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
126 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * *
14606384 GGCTTGTAAATTCATACAACGATGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
191 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
* * * * * * *
14606449 TTTCTATTTCTCATGATTTTTCAAACTTTTTACGGTTTGGGATTCTTTAAAATTTTTTCGGAAGG
256 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
14606514 AGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGTATTCTTGTTGGCAAGCACAAAAAAATTCA
321 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
14606579 GCCACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACT
386 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
14606644 TTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTAGA
451 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
14606709 GGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
516 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
14606774 GCAAACCCCCCCGGCCCCCCCGATCGTCGGAACTCCAATGCTGCCGGTCAGGTTCTCTGACGATG
581 GCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * * *
14606839 CT-C--CGA----------CGAAGAAAAATACGGCACCATCACATGCTCGATCCTAGCATGTGCT
644 CTCCGGCGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
14606891 GCTGCAA-CC-C--TC-AGT-C---C----A----G--T----T-CG-AT-CTTAGACTGGGAAT
709 GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * *
14606930 GAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCG-TTAGCCTGCCAGAAGGGCG
774 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCG
* ** * ** *
14606994 GTATGCGTAAGCCGAGGATCGATCGGTTCCCCCTCTGCGTGCTACCGATCCTGCTGTCGC
839 GGATGCACAAGCCGGGGATCGGCCGG-TCCCCCTCTGCGTGCTACCGATCCTGCTGTCAC
* * * * * * * *
14607054 AACCCTCGATCTGGTCTGATCTTGGACTGGGAATGAACTCCGAATGCCTAAGTC-GACTGATGAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAAC-GACGAA
* * * * *
14607118 ATG-A---GCGGGCGGGCGG-GCACTACGCCAGCCTGAGAGACGGGATGCGCAAGCCGTGGATGG
65 ACGAACGGGCGGGCGGGCGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
14607178 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCCTGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * ** *
14607243 TGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAAACAACACGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
* * * *
14607308 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGATTT
260 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
14607373 TTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
14607437 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
14607502 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
14607567 TGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCACACATCATGTGCGGAA
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCA
* * * * * *
14607632 AACCCCCCGGCCCCCCCAATCGTCGGAA---CAACGCCGTCGGTTAGGTTCTCCGACGATGCTCC
584 CACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * * ***
14607694 GGCAATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAACATGTGCTATT
648 GGCGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* ** * * * * *
14607759 GTAAATCTTGCT-TCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGAATGA
712 GCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
14607823 ACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCGCTCAGCCTGCCAGAAGGGCGGT
776 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGG-
** * ** * * * *
14607888 G-TGCGTAAGCCGAGGATCGATCGGTTCCCCCTCTACGTGCTATCGATCTTGCTGTCGC
840 GATGCACAAGCCGGGGATCGGCCGG-TCCCCCTCTGCGTGCTACCGATCCTGCTGTCAC
* * * *
14607946 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGAATGCCTAAGCC-AACTGACGAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAAC-GACGAA
** * * * * *
14608010 ATTAA----CGGGAGGGCGG-GCACTACGCCGACCTA-AAAGACGGGATGCGCAAGCCGTGGATG
65 ACGAACGGGCGGGCGGGCGGCGCACTACGTCGGCC-AGAGAGACGGGATGCGCAAGCCGTGGATC
* *
14608069 GATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* * * * ** *
14608134 TTGTAAATTCATACAATGGTCACTTAAGCCTTCGCGTGAAGTTTCATGACAAAACAACACGTTTT
194 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
* * ** * * *
14608199 CTATTTTTCACGACTTTTAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGATT
259 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
14608264 TTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTAGCT
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
14608328 GAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
389 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
14608393 A-GGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
14608457 TTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * ** * * * *
14608522 CACCCCCCGGCCCCCCTAATCGTCGGAA---CAACACCGCCAGTCAGGTTCTCTGGCGATGCTCT
584 CACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* **
14608584 GGAGATGGTGCCCCGATAAAGAAAAATGCGGC
648 GGCGATGGTGCCCCG-CGAAGAAAAATGCGGC
14608616 TACCCCTCTG
Statistics
Matches: 7577, Mismatches: 911, Indels: 513
0.84 0.10 0.06
Matches are distributed among these distances:
851 27 0.00
852 1 0.00
854 259 0.03
855 224 0.03
856 2 0.00
861 10 0.00
864 4 0.00
865 155 0.02
866 56 0.01
867 2 0.00
868 1 0.00
869 2 0.00
870 2 0.00
873 1 0.00
874 1 0.00
875 1 0.00
877 2 0.00
878 277 0.04
879 312 0.04
880 8 0.00
881 1 0.00
882 5 0.00
883 37 0.00
884 211 0.03
887 2 0.00
888 13 0.00
889 12 0.00
890 92 0.01
891 756 0.10
892 972 0.13
893 292 0.04
894 356 0.05
895 89 0.01
896 4 0.00
897 1 0.00
898 1 0.00
899 7 0.00
900 2 0.00
901 210 0.03
902 1059 0.14
903 337 0.04
904 11 0.00
905 787 0.10
906 63 0.01
907 11 0.00
908 20 0.00
909 77 0.01
910 11 0.00
911 2 0.00
912 6 0.00
913 11 0.00
914 6 0.00
915 9 0.00
916 8 0.00
917 5 0.00
918 2 0.00
920 5 0.00
921 2 0.00
923 1 0.00
926 1 0.00
928 2 0.00
929 7 0.00
931 1 0.00
932 4 0.00
933 9 0.00
934 9 0.00
935 4 0.00
936 14 0.00
937 6 0.00
938 2 0.00
939 9 0.00
940 74 0.01
941 20 0.00
942 5 0.00
943 1 0.00
944 34 0.00
945 18 0.00
946 382 0.05
947 78 0.01
948 3 0.00
949 2 0.00
950 2 0.00
952 1 0.00
953 2 0.00
954 9 0.00
955 35 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAA
CGAACGGGCGGGCGGGCGGCGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGC
GATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCA
CAAGCCGGGGATCGGCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCAC
Found at i:14605162 original size:26 final size:26
Alignment explanation
Indices: 14605133--14605185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14605123 CCGGTTCGAT
*
14605133 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14605159 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14605185 C
1 C
14605186 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14606064 original size:26 final size:26
Alignment explanation
Indices: 14606024--14606076 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14606014 CCGGTTTGAT
*
14606024 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14606050 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14606076 C
1 C
14606077 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14607810 original size:26 final size:26
Alignment explanation
Indices: 14607781--14607833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14607771 TCGGTCTGAT
*
14607781 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
14607807 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
14607833 C
1 C
14607834 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:14609409 original size:26 final size:26
Alignment explanation
Indices: 14609380--14609432 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14609370 CCAGGCTGAT
14609380 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14609406 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14609432 C
1 C
14609433 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14610312 original size:25 final size:26
Alignment explanation
Indices: 14610278--14610327 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14610268 CTAGTCCAAT
*
14610278 CTTAGACT-GGAATGAACTTCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
14610303 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14610328 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:14610668 original size:897 final size:899
Alignment explanation
Indices: 14608618--14622681 Score: 16992
Period size: 898 Copynumber: 15.9 Consensus size: 899
14608608 AATGCGGCTA
* * * * * *
14608618 CCCCTCTGCGTTCTACCGATCCTACTGTCGCAACCCTC-AGT-TCGGTCTGATCTTAGACTGGGA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCT-GGTCTGATCTTAGACTGGGA
* ** * *
14608681 ATGAACTCCGTATGCCAAAGCCAATTGATGAAATGA----GCGGGCGGGCGGGCACTACGCCGGC
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGC
*
14608742 CTA-AGAGACGGGATGCGCAAG-CGATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATC
130 C-AGAGAGACGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
14608805 TTATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTT
193 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
14608870 ACGTGAAGTTTCATGGCAAAACAACACGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
258 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
* * * *
14608935 TCGAGATTTTTTAAAATATTTTT-GGAACGATTTTTGCCCCCAAACTTGGTAGACATGATCCTTG
323 TCGAGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
14608999 TATTTATGTTGGCATGCACAAAAAAATTCAGCTGAAAAA-TCGAAGTGTACAAGATTTTGTGGCC
387 TATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACC
*
14609063 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
451 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
14609128 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGC
516 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
** * *
14609193 CAAGTACCAGCACCCATAACAC-CCAATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAAC
581 CAAGTACCAGCACCCATCGCACATC-ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAAC
* * * * * *
14609257 CCAAATGCCGTCGGTCAAGTTCTCCGGCGATGCTCCGATAATGGTGCCCCGACGAAGAAAAATAC
644 CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGAGGAAGAAAAATGC
* * * * * * *
14609322 GGCACCAGCACATGCCCGAGCCCATCCTGTGCTGCCACAACCCTCGCTCCAGGCTGATCTTAGAC
708 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGAC
* * * *
14609387 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAGTCTGTATGCCTAAGTCAACCTAGGAAAC
773 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * *
14609452 TAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAGGTCGGGGATTGGTCGGGTC
838 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * * **
14609514 CCTCTCTGCATGCTGCCGATCCTACTGCCGCAACCCTC-ACTTTGGTCCAATCTTAGACTGGGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * * * *
14609578 TAAACTCCATATGCCTAAGCCGATCGACGAAACGAGCGGG-GAGGCGGGCGGGCACTACACCGGC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GGCGGGCGGGCACTACGCCGGC
14609642 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
130 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* **
14609707 AATTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
195 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
14609772 GTGAAGTTTCATGGCAAGAAGACACGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTC
260 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * * *
14609837 GAGATTTTTTAAAATTTTTTCAGAAGAAATTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTAT
325 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
14609902 TTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
390 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
14609967 GAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACTTGTAAAATCTCAAAT
455 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
14610032 GCTCTTTAAGGGGGTGTGAGTTCTC-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
520 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* **
14610096 TACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCACCGGAACCCCAAT
585 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * * * *
14610161 GCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGTGACGGAGCCTCAAGGAAGAAAAATGTGTCACC
650 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCC-CGAGGAAGAAAAATGCGGCACC
* * * * *
14610226 AGCACATGCCCGAGCCCAGAATCTACTGTCGCAACCCTCGGTCTAGTCCAATCTTAGACT-GGAA
714 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAA
* * *
14610290 TGAACTTCGTATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGT
779 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* *
14610355 GCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTC
844 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
*
14610411 CCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * * * *
14610475 TGAAATCGGTATGCCTATGCCAACCGACAAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
*
14610540 AGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
131 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
14610605 TTTCTATGTGCCAATGCCATTTTTATGGCTT-TAAAATTCATACAATGGTCCCTTAAGCCTTCAC
196 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGT-AAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * ** * *
14610669 GTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCACGATTTTCAAAACTTGTTACGGTTT
260 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * ** * *
14610734 GGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTAAATGTGATCCTTGTAT
325 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
14610799 TTTTTTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTT
390 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
14610864 GAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAAT
455 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
14610929 GCTCTTTAAAGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
520 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * *
14610994 TACCAGCACCCATCGTACATCATGTGCGCACACCCCCTGACCACCCCGATCATCAGAACCCCAAT
585 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * ** *
14611059 GCCGTCGATCAGGTTCTTCGGCGA---T---G-G-T-G-CCCCGCTGAAGAGAAATGCGGCACCA
650 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCGAGGAAGAAAAATGCGGCACCA
* * *
14611114 GCACATGCCCAAGCCCAGCATGTGCTGCGGCAGCCCTC-G----GTCCGATC-----C-------
715 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAAT
*
14611162 --A------AT-CTTAGACTGGGAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTG
780 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
14611218 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAACCGGGGA----TC-GG--
845 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * **
14611266 ---C-C--AGT-CT---AATCC-G--G-------TCT-TAGACTGG---GA-ATGA-ACT--CCA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * * * * * * *
14611303 T--A-TGCC-TAAG-C-AAACCGA-CGA-AATGAGCGAGCGGACGGGCGGGCGAGCACTACGTCG
66 TGAACT-CCGTATGCCTAAGCCAACCGACGA--AACGAGCGGGCGGGCGGGCGGGCACTACGCCG
* * * * *
14611360 GCTAGAAAGACAGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
128 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * **
14611425 ATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACCATAATCCCTTAAGCCTTC
193 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
14611490 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCT-AAACTTTTTACAG
258 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-TGAAACTTTTTACGG
* ** *
14611554 TTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTCCCCCACACTTGGTAGACGTGATCCTTG
322 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
14611619 TATATTTT-TTCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
387 TAT-TTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
14611683 CATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
450 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
14611748 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGACCAATATAA-GG
515 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
14611812 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
580 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
* * * * **
14611877 CCAATGCCGCCGGTTAGGTTCTCCGGAGATGCTCTGACGATGGTGCCCCG-GTGAAGAAAAATGC
645 CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGAG-GAAGAAAAATGC
** * * **
14611941 AACACCAGCACATGCCAGAGCCTAGCATGT-CCACCGCAA--C-C---C---T-CGATC-----C
708 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGAC
* *
14611990 -------G-A-TCCG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACCCACGAAAC
773 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * *
14612044 GAGCGTGCGAGCGGTCAACCAGG-TAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTC
838 GAGCGTGCGGGCGCTCAGCC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * ** * *
14612106 CCCCACTACGAGCT-ACAGATCCTGCTACCGTAACCCT-TAGTCTGGTCCGATCTTAGACTGGGA
1 CCCCTCTGCGTGCTGCCA-ATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGA
* * * ** ** * *
14612169 ATGAAGTCCGTATGCCTAAGCCAACCAAC-AAA--A-TGAACGGGCGGGTAGGCACTATGTCGGC
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGC
* * * ** *
14612230 TAGAGAGACAGGATGCACAAGCCGTGTCTCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCAT
130 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * *
14612295 GTTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCTTTACGCGTTCAC
195 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
14612360 ATGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC
260 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * *
14612425 GGGATTTTTTAAACTCTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
325 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
** * *
14612489 TTTCATTGTCATGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
390 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
14612554 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
455 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
14612619 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
520 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * **
14612684 TACCAGCACCCATCGCACATCATGTGTGCACACCCCTCGG-CCCCCTGATCGCCGGAACCTTAAT
585 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * **
14612748 GCCGTCGGTCAGGTTCTTCGGCGATGCTACGGTGATAGTGCCCCG-GTGAGGAAAAATATGGCAC
650 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGAG-GAAGAAAAATGCGGCAC
* * * * * *
14612812 CAACACATGCCCGAGCCCAGCATGTGCTACCGCAAACCTCGGTC-CGATCTGATCTTACACTGGG
713 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAG-TCCGATCTTAGACTGGG
* * *
14612876 AAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACCCACGAAACGAGC
777 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * *
14612941 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGAGATGCGTAAGTCGGGGATCGATCGGGTC
842 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * *
14612999 CCCCTCTGCGTGCTGTCGATCCTACTGTCGCAACCCTC-AGTCTGGTCCT-ATCTTAGACTGGGA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGT-CTGATCTTAGACTGGGA
* *
14613062 ATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGC---C-GGTGGGCGGGCACTACGCCGGC
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGC
14613123 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
130 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
**
14613188 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
195 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
14613253 GTGAGGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTT
260 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * *
14613318 GTGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTAT
325 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
14613383 TTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
390 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
14613448 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCATAT
455 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
14613513 GCTCTTTAAGCGGGTGTGAGTTCTCAAGGTTTGACGAGGGATA-GGGGCCAATATAAAGGCCAAG
520 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
14613577 TACCATCACCAATCGGACATCATGTGCGCACACCCCCCTCGG-CCCCCCGATCTTCGGAACCCCA
585 TACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGG-------
14613641 ATGCCACCGGTACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCACG-
641 A----A-C----CCC-AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCC-CGA
* * * *
14613705 GTAATGAAAAATGCGGCATCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTG
695 GGAA-GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTA
* * *
14613770 GTCCGATCTTCGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
759 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
14613835 TCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGTCAGAGGGGCCGGATGCGCAAGCCAGGGA
824 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
14613900 TCGGTCGGGTC
889 TCGGTCGGGTC
* * * * * ** *
14613911 CCCC-CTACGTGCTGCTAAACCTGCTGCCACAACCTTC-ACTCCAGTCTGATCTTAGACTAGGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * * *** * * * *
14613974 TGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGTGGATAGGCGAGCGGACACTACGCTGGCT
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* ** * *
14614039 AGAGAGACAGGATATGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATA
131 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* ** * *
14614104 TTTTTGCATGCCAATGCCATTTTTATGGCATGTAAAATCATACAATGGT-CCTTAAGCCTTCACG
196 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
14614168 TGAAGTTTCATGGCAAGATGATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTG
261 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * * * * *
14614233 GGATTTTTTTAACTTTTTT-GGAAGGAGTTTTGGCCCCAAAATTGGCAGACATGATCCTTGTATT
326 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * * *
14614297 TTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTGGAAGTGCACAAGATTTTATGACCATTCG
391 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
14614362 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
456 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
14614427 CTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGT
521 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * * *
14614492 ACCCGTATCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCTATCGCCGGAACCCCTAT
586 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
** * * * * * *
14614557 GCCGTCGGTCAGGTTCTCTAGTGATGCTCTGGT-ATTAGTGCCCCGACGAAGAAAAATGTGACAC
650 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGA-TGGTG-CCCGAGGAAGAAAAATGCGGCAC
** * * * *
14614621 CAGCACATGCTTGAGCCTAGCATGTGCTGCTGCAAACCTCGGTCTAATCCGATCTTAGACTGGGA
713 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGA
* * * * * *
14614686 ATGAACTCCATATGGTTAGACTGGGAATGAACTCCGTATTCCTAAGTCAGCCCATGAAACGAGAG
778 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * **
14614751 TGTGGGCGCTCAGTCGGCCAGAGGCGCGGGATGCGTAAGCCGGGGATCGGCCGCATC
843 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * *** ** * *
14614808 CCCCTCTGCGCGCTGCCTATCTTGCTACTGGAATTCTC-AGTGTGGTCTGATCTTAGACTGTGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* ** * * *
14614872 TGAACTCCGTATGCCTAAGCCAACTGACGAAACGAATGGGCGGGCGGACGGACACTACGTCGGCC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* *
14614937 AGAGAGACGGGATGCGTAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
131 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
14615002 TTTCTATGTGCCAATGCCATTTTTATGGCGTGTAAATTGATACAATGGTCCCTTAAGCCTTCACG
196 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * **
14615067 TGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG
261 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* *
14615132 AGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTT
326 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TAT
* * *
14615197 TTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTA
390 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
14615262 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAATT
455 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
14615327 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
520 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
14615392 TACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGACCCCCCAGATCGTCGGAACCCCAA
585 TACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAA
* * * * * * *
14615457 TACCGACGGTAAGG---T-------TG-TCCGGTGATGGTGCCCCGACGAGGAAAAATACGACAC
649 TGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGAGGAAGAAAAATGCGGCAC
* ** * * *
14615511 C-GACACATGCTCGATTCCAGCATGTGCTACCGCAACTCTCGGTCT-GATCCGATTTTAGACTGG
713 CAG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAG-TCCGATCTTAGACTGG
* **
14615574 GAATGAACTCCGTATGCTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAG
776 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
14615639 CGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGTGTAAGCCGGGAATCGGCCGGGTC
841 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * *
14615698 CCCCTCTGCGTGCTG-TAGATCCTGCTGCCACAACCCTCGA-TTTGGTCTGATCTTAGGCTGGGA
1 CCCCTCTGCGTGCTGCCA-ATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGA
* *** * * *
14615761 ATTAACTTATTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGACGGGCAGGCGGGCACTACGT
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGC
* * * *
14615826 CGGCCAGAGAGACGGGATGCGCAAGTCGAGGATCAATAGGGTGGTAGGTGGGTTTAGTCACATCT
126 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* ** * *
14615891 TTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCGT
191 TCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * **
14615956 TCACGTGCAGATTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACG
256 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* *
14616021 GTTCGAGA-TTTTTAAAATTTTTTTCGAAAGGAGTTTT-GCCCCAAAACTTGGTAGACTTGATCC
321 GTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCC
14616084 TTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
384 TTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
** * * * ** *
14616149 ACCATTCAAAAAAAGTGCCCCCATTTTAGACACTTTAGTAACTACTAGCAGCAAACCTGTAAAAT
448 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
14616214 CTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
513 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
14616278 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC-CCCCCC-G-------G-TCGCCGGAA
578 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
* ** * *
14616333 CCCCAATGCCG-CTGGTCA-GTTCTCCAGCGATATTCCGGCGATGGTGCCCCAGCGAAGAAAAAT
643 CCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCGAG-GAAGAAAAAT
* *
14616396 GCGGCACCAGCACATGCCC-A-CATCCAGCATGTGCTACCGCAACCCTTGGTCTAGTCCGATCTT
706 GCGGCACCAGCACATGCCCGAGC--CCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTT
* * * * *
14616459 AGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATTAACTCCATATTCCTAAGTCAACCCACC
769 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
14616524 AAACGAGCGTGCAGGCGTTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT
834 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
14616589 C
899 C
* * * * * *
14616590 CCCCTCTGTGTGCTGCCGATCCTACTACCATAACCCTCGA-TCTGGTCGGATCTTAGACTGGGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * *
14616654 TGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCCGCC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
14616719 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
131 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** * * *
14616784 TTTCTGCATGCCAATGCAATTTTTATGGCTTCTAAATTCATACAATGGTCCCATAAGCCTTCACG
196 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
14616849 TGAACTTTCATGGCAAGATGGCTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTATGGTTC-
261 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * * **
14616912 AGGATTTTTTAAAATTTTTTCGAAAGAATTTTTGGCCTGAAACTTGGTAGACGTGATCCTTGTAT
326 A-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
14616977 TTTTGTTGGCATGCACAAAACAATTCAACTAAAAACTCGAAATGTACAAGATTTTGTGACCATTT
390 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
14617042 GAAAAAACTGTCCCCATTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGCAAAATCTCAAAT
455 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
14617107 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAG
520 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
14617172 TACCAGCACCCATCACAC-CCAATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAA
585 TACCAGCACCCATCGCACATC-ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* * * * ** * *
14617236 TGCCGCCGGTCAAGTTCTTCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCTC
649 TGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGAGGAAGAAAAATGCGGCAC
* * * * *
14617301 CAGCACAT-CCCTGAGCCCATCATGTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGG
713 CAGCACATGCCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGG
*
14617365 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
777 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * **** *
14617430 GTGCAGGTGCTCAACCGGCCAGAGGGGTGGGATGCCCAAGTTAAGGATTGGTCGGGTC
842 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * ** * *
14617488 CCCCTCTGCGTGCTGTCAATCTTGCTGCTGCAACCCTCGA-TCTGGTGTGATCTTAGACTGGCAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * *
14617552 TGAACTCCATATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCAGGCACTACGCCGTCC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* *
14617613 AAAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
131 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* ** * * *
14617678 TTTTTGCATTCCAATGCCATTTTTATGGCTTGTATATTCATACAATGGTCCCTTAAGGCTTCACG
196 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
14617743 TGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
261 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * *
14617808 AGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAGTTGGTCGACGTGATCCTTGTATT
326 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
14617873 TTTGTTGGGATGCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
391 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
14617937 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAGTCTCAAATG
456 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
14618002 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAGTATAAGGGCCAAGT
521 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
14618067 ACCAGCACCCATCGTACATCATGTGCGCATA-CCCCCGGCCCCCCCGATCGTCAGAACCCCAAT-
586 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
* *
14618130 ---AC---C--G---T-C--CGA-----C---GATGGTGCCTCG-GTGAAGAAAAATACGGCACC
651 CCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCC-CGAG-GAAGAAAAATGCGGCACC
* * * * * *
14618172 AGCACATGCCCGAGCCCAGCATATGCTGCCGTAACCCTTGGTCT-GATCTGATCTTAGGCAGGGA
714 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAG-TCCGATCTTAGACTGGGA
* * * * *
14618236 ATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACAAAACAAGCG
778 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** * * * *
14618301 TGATGGCGCTCAGCAGGCC-GAAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTC
843 TGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * * *
14618358 CCCCTCTGCATGCGGTCGATCTTGCTGCCATAACCCTC-AGTCTGGTCTGATCTTAGATTAGGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * *
14618422 TGAACGCCGTATGCCTGAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* * * * *
14618487 AGAGAGACGAGATGCGTAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCTTA
131 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
14618552 TTTCTGCGTGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCGCG
196 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
14618617 TGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTGTACGGTTTG
261 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * * * * ** *
14618682 GGATTTCTTAAAATTTTTTCGAAAGAAGTTTTGGCCCAAAACTTATTAGATGTGATCCTTGTATT
326 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
14618747 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTG
391 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
14618812 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTAGCAGCAAACCTGTAAAATCTCAAATG
456 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
14618877 CTTTTTAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
521 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
14618942 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGAAACCTCAA
586 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAA
* * ** * * * * *** * *
14619007 ---AG-CGG-CA---CCAAC-AC-ATGC-CC----A---AGCCC-AGCATG--TGCTACCGCAAC
649 TGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCGAGGAAGAAAAATGCGGC-AC
* * * * * * ** *
14619051 C--CTC-GGTCCG-GTCC-G-ATCTTAGACTG--GGAA---T-GAACTCGT---ATGCTTAGACT
713 CAGCACATGCCCGAGCCCAGCAT-GT-G-CTGCCGCAACCCTCGGTCTAGTCCGAT-CTTAGACT
* *
14619101 GGGAATGAA---C-T-T-C--ATA-T--GC---------------CTAAGTCAACCCACGAAACG
774 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
14619140 AGTGTGCGGGTGCTCAGTCTGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTC
839 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* *** *
14619201 CCCCTCTACGTGCTGTTGATCCTGCT-CTCGCAACCCTCG-GTCTGGTCTGATCTTAGACTGGGA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGC-CACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGA
* * *
14619264 ATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-GGC---CGGGCACTATGCTGGC
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGC
* * *
14619325 CAGAGAGACGGGATCCGCAAGTCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
130 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
***
14619390 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
195 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * ** *
14619455 GTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACCATTTGCGGTTC
260 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * *
14619520 GGGATTTTTTTAAAACTTTTTT-GGAAGGTGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGT
325 GAGA-TTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * * *
14619584 ATTTTTTTTGGCTTGCACAAAAAAAATCAGCCAAATACTCGAAGTGTACAAGATTTTGTGATCAT
388 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
14619649 TTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
453 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
14619714 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCA
518 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
14619779 AGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGACCCCTCCGATCGTCGAAACCGC
583 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * *
14619844 AAT---GTTGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGC
647 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGAGGAAGAAAAATGCGGC
* * * * * * * *
14619906 ACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGATCTGGTCTGATCCTAGATTGG
711 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGG
* * * * *
14619971 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCAAGCCTAAGTCGACCAACGAAATGAG
776 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
14620036 CGCGCGGGCGCTCAGCCGGCCAGA-GGG-GGGATGCGCAAGCCGAGAATCGATCGGGTC
841 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * * ** *
14620093 CCCCTCTGCATGCTACCGATCCTACTGCCGCAACCCTTGA-TCTGATCCAATCTTAGATTGGGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * * *
14620157 TGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGACGGGTGGGCGGGCACTACGTCGGCC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* *
14620222 AGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATA
131 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
14620287 TTTATGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACA
196 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
14620352 TGAAGTTTCATGCCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTACGGTTCG
261 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* *
14620417 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGAGGTGATCCTTGTATT
326 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
14620482 TTTGTTGGCATGCACAAAAACAA-TCAACTAAAAACTCGAAGTGTACAATATTTTGTGATCATTT
391 TTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * * *
14620546 GAAAAAAGTGTCCTCATTTCAGACACTTTAATGACTACTGGCAGTAAACCTGTAAAATCTCATAT
455 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
14620611 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAG
520 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
14620676 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCATCAGAACCCCAAT
585 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
** * * *** * **
14620741 GCAATCGATCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATATGGCACC
650 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGAGGAAGAAAAATGCGGCACC
* * * *
14620806 AGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTTCGATCTTAGATTGGGAA
714 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAA
* * *
14620871 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGAGCTT
779 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
14620936 ACGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCATGCCGGGGATCGATCGGATC
844 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * *
14620992 CCCCTCTGTGTGCTACCGATCCTACTGTCACAACCCTC-AGTCTGGTCTGAACTTAGACTAGGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
* * **
14621056 TGAACTCCGTATGCCTTAGCCAACCGACGAAACGA----GCAGGCGGGCGGGCACTACGTTGGCC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
*
14621117 AGACAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
131 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
14621182 TTTCTATGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
196 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * ** * * *
14621247 TGAAGTTTAATGGCAAGACGAAC-CATTTTCTATTTTTCACGATTTTCAAAACTTTTTATGATTT
261 TGAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * *
14621311 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAC
325 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * * * *
14621376 CTTTGTTGGCATGCACAAAACATTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTG
390 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
14621441 GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
455 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
14621506 GCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAG
520 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
14621571 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCGGCCCCCCCGATCGTCAGAACCCT
585 TACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * ** * *
14621636 AATACCGTCGATCAGGTTCTCCTACGATGCTCCGGTGATGGTGCCCTG-GTGAAGAAAAATACGA
647 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCC-GAG-GAAGAAAAATGCGG
* * * *
14621700 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATCCTCAGTCCACTCCGATCTTAGACTG
710 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTG
* * * * *
14621765 GGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACGAAATGA
775 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * *
14621830 GCTTACGGGCACTCAGCCGGCCAGAGGCGCGGGATGCGTAAGCCGGGGATCGATCAGATC
840 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * *
14621890 CCCCTATACGTGCTGCTAATCCAGCTGTCACAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAA
1 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
** * * *
14621954 TGAACTCTATATGCCTAAGCCAACTGACGAAACAAGCAGGCGGGCGGGCGGGCGGGCACTACACA
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCGGGCACTACGCC
* * * **
14622019 GACCAAAGAGACAGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
127 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
14622084 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
192 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* ** *
14622149 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGG
257 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * * **
14622214 TTCGGGATTTTTTAAAATTTTTTTGGATGAAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTG
322 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
14622279 TATTTTTTTTGGCATGCACAAAAAATTTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
387 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
** *
14622344 TTTGAAAATGGTGTCCCCATTTCAGACACTTAAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
452 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
14622409 AATGCTCTTCAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
517 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
14622474 AAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
582 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * * * * * * * *
14622539 AATGCC-ACAGGTTAGGTTCTCCGGCGATGCTTCAGCGATGGTGCCCGGGCGAAGAAAAAAGTGA
647 AATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCGAG-GAAGAAAAATGCGG
* * * * * *
14622603 CACCAGCACATGCCAGAGCCTAGTATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTG
710 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTG
14622668 GGAATGAACTCCGT
775 GGAATGAACTCCGT
14622682 TGGCTAAGCC
Statistics
Matches: 11436, Mismatches: 1385, Indels: 687
0.85 0.10 0.05
Matches are distributed among these distances:
821 2 0.00
822 3 0.00
823 348 0.03
824 177 0.02
825 4 0.00
826 3 0.00
828 8 0.00
829 2 0.00
830 5 0.00
831 4 0.00
832 3 0.00
833 91 0.01
834 43 0.00
835 6 0.00
837 2 0.00
838 2 0.00
839 216 0.02
840 267 0.02
841 8 0.00
842 4 0.00
843 155 0.01
844 5 0.00
845 6 0.00
846 5 0.00
847 4 0.00
848 2 0.00
849 3 0.00
850 4 0.00
851 3 0.00
852 1 0.00
854 1 0.00
855 3 0.00
856 3 0.00
857 5 0.00
858 8 0.00
859 2 0.00
860 15 0.00
861 6 0.00
862 96 0.01
863 7 0.00
864 2 0.00
865 5 0.00
866 277 0.02
867 98 0.01
868 228 0.02
869 28 0.00
870 267 0.02
871 10 0.00
872 8 0.00
873 6 0.00
874 268 0.02
875 203 0.02
876 7 0.00
877 17 0.00
878 29 0.00
879 6 0.00
880 5 0.00
881 5 0.00
882 32 0.00
883 6 0.00
884 3 0.00
886 115 0.01
887 209 0.02
888 199 0.02
889 7 0.00
890 266 0.02
891 17 0.00
892 394 0.03
893 577 0.05
894 1016 0.09
895 830 0.07
896 285 0.02
897 1033 0.09
898 1064 0.09
899 280 0.02
900 442 0.04
901 249 0.02
902 4 0.00
903 143 0.01
905 2 0.00
906 468 0.04
907 2 0.00
910 2 0.00
911 80 0.01
912 223 0.02
913 205 0.02
914 158 0.01
915 124 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGAGTCTGGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
CCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCGAGGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
Found at i:14615594 original size:26 final size:26
Alignment explanation
Indices: 14615565--14615616 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14615555 TGATCCGATT
*
14615565 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTCGGAATGAACTCCGTATGC
14615591 TTAGACTCGGAATGAACTCCGTATGC
1 TTAGACTCGGAATGAACTCCGTATGC
14615617 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTCGGAATGAACTCCGTATGC
Found at i:14617390 original size:26 final size:26
Alignment explanation
Indices: 14617354--14617406 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14617344 CTGGTCTGAT
14617354 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14617380 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14617406 C
1 C
14617407 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14617558 original size:898 final size:897
Alignment explanation
Indices: 14611998--14622681 Score: 13059
Period size: 894 Copynumber: 12.0 Consensus size: 897
14611988 CCGATCCGAT
* * * * *
14611998 CTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGAGCGGTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
14612063 CAGG-TAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCACTACGAGCT-ACAGAT
66 C-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-GAT
* ** * * *
14612126 CCTGCTACCGTAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCC
129 CCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * ** * * * *
14612191 AACCAACAAAATGAA---CGGGCGGGTAGGCACTATGTCGGCTAGAGAGACAGGATGCACAAGCC
194 AACCGACGAAACGAAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
** * * **
14612253 GTGTCTCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTGTGTGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * * * *
14612318 TCATGGCTTGTAAATTCATACAATGGTCCTTTACGCGTTCACATGAAGTTTAATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
14612383 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAACTCTTTT-GG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
** *
14612447 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTCATTGTCATGCACAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
14612512 TTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
14612577 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
14612642 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * ** * *
14612707 GTGTGCACACCCCTCGG-CCCCCTGATCGCCGGAACCTTAATGCCGTCGGTCAGGTTCTTCGGCG
714 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* ** * ** * * *
14612771 ATGCTACGGTGATAGTGCCCCGGTGAGGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATG
779 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-CCCGAGCCCAGCATG
* * * * * * *
14612836 TGCTACCGCAAACCTCGGTCCGATCTGATCTTACACTGGGAAAGAACTCCGTATG
843 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14612891 CTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14612956 CGGCCAGAGGGGCGAGATGCGTAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
14613021 TACTGTCGCAACCCTCAGTCTGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTA
131 TGCTGCCACAACCCTCAGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14613085 ACCGACGAAACG-A--GCCGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
195 ACCGACGAAACGAAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
14613147 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
14613212 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGATGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
14613277 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGTGATTTTTTTAAATTTTTTCGGA
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * *
14613342 AGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGGTATGCACAAAAAAAT
455 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
14613407 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
520 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
14613472 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCATATGCTCTTTAAGCGGGTGTGAGTTCT
585 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * * *
14613537 CAAGGTTTGACGAGGGATA-GGGGCCAATATAAAGGCCAAGTACCATCACCAATCGGACATCATG
650 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
14613601 TGCGCACACCCCCCTCGG-CCCCCCGATCTTCGGAACCCCAATGCCACCGGTACCCTAATGCCGT
715 TGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAAT-------G---CC----G-C--
** * * *
14613665 CGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCACG--GTAATGAAAAATGCGGCATCAGC
761 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG-AA-GAAAAATACGGCACCAGC
* * *
14613728 ACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTCGACTGAGAATGA
824 ACAT-CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
*
14613793 ACTCCATATG
888 ACTCCGTATG
* * *
14613803 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14613868 CGGTCAGAGGGGCCGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCC-CTACGTGCTG-CTAAAC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * ** *
14613931 CTGCTGCCACAACCTTCACTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * **
14613996 ACCGATGAAAC-AAGTGGATAGGCGAGCGGACACTACG-CTGGCTAGAGAGACAGGATATGCAAG
195 ACCGACGAAACGAAG-GG-CGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAG
* * *
14614059 CCGTGTATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
14614124 TTTTATGGCATGTAAAATCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
14614188 ATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAACTTTTTT-
387 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
14614252 GGAAGGAGTTTTGGCCCCAAAATTGGCAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
452 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
14614317 AATTCAGATAAAAACTGGAAGTGCACAAGATTTTATGACCATTCGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14614382 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
14614447 TCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCCGTATCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * **
14614512 ATGTGCGCACACCCCCCCGGCCCCTCCTATCGCCGGAACCCCTATGCCGTCGGTCAGGTTCTCTA
712 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * ** * ** *
14614577 GTGATGCTCTG--GTATTAGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCTTGAGCCTA
776 GCGATGCTCCGACG-A-TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-CCCGAGCCCA
* * ** *
14614640 GCATGTGCTGCTGCAAACCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCCATATG
838 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14614700 GTTAGACTGGGAATGAACTCCGTATTCCTAAGTCAGCCCATGAAACGAGAGTGTGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** ** * * * *
14614765 CGGCCAGAGGCGCGGGATGCGTAAGCCGGGGATCGGCCGCATCCCCCTCTGCGCGCTGCCTATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* *** ** * *
14614830 TGCTACTGGAATTCTCAGTGTGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14614895 CTGACGAAACGAATGGGCGGGCGGACGGACACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCG
196 CCGACGAAACGAA-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* ***
14614960 TGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
14615025 TATGGCGTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** *
14615090 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
14615155 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTTTTTGGCTTGCACAAAAAAA
455 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAA
*
14615220 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14615285 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14615350 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
14615415 GTGCGCACACCCCTCCGACCCCCCAGATCGTCGGAACCCCAATACCGACGGTAAGGTTGT-C--C
714 GTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * **
14615477 G--G-T-----GATGGTGCCCCGACGAGGAAAAATACGACACC-GACACATGCTCGATTCCAGCA
778 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAG-CACAT-CCCGAGCCCAGCA
* * * *
14615533 TGTGCTACCGCAACTCTCGGTCTGATCCGATTTTAGACTGGGAATGAACTCCGTATG
841 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* **
14615590 CTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
14615655 CGGCCAGAAGGGCGGGATGTGTAAGCCGGGAATCGGCCGGGTCCCCCTCTGCGTGCTGTAGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * ***
14615720 TGCTGCCACAACCCTC-GATTTGGTCTGATCTTAGGCTGGGAATTAACTTATTATGCCTAAGCCA
131 TGCTGCCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14615784 ACCAACGAAACGAGCGGGCGGACGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGA---AG-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * *
14615849 AGTCGAGGATCAATAGGGTGGTAGGTGGGTTTAGTCACATCTTTATATTTCTGCATGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
14615914 ATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCGTTCACGTGCAGATTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
14615979 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTT
* *
14616043 TTCGAAAGGAGTTTT-GCCCCAAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACA
449 TTCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-
** *
14616107 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGCCCCCA
512 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * ** *
14616172 TTTTAGACACTTTAGTAACTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
577 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
14616236 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
642 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
14616301 ACATCATGTGCGCAC-CCCCCC-G-------G-TCGCCGGAACCCCAATGCCGCTGGTCA-GTTC
707 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* ** * *
14616355 TCCAGCGATATTCCGGCGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCC-A-C
772 TCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACAT-CCCGAGC
* * *
14616417 ATCCAGCATGTGCTACCGCAACCCTTGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
835 --CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14616482 CTTAGACTGCGAATTAACTCCATATTCCTAAGTCAACCCACCAAACGAGCGTGCAGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14616547 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
14616612 TACTACCATAACCCTC-GATCTGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14616676 ACCAACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCCGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAA-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
*
14616741 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * * *
14616806 TTATGGCTTCTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAACTTTCATGGCAAGATGGC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
14616871 TCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGA
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * ** *
14616935 AAGAATTTTTGGCCTGAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
14617000 TTCAACTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14617065 CACTTTATTGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
14617130 TCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCACAC-CCAA
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-A
* * * * *
14617194 TGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTTCGGT
713 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * *
14617259 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCTCCAGCACATCCCTGAGCCCATCAT
778 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATCCC-GAGCCCAGCAT
* * *
14617324 GTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
842 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14617380 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * **** * * * *
14617445 CGGCCAGAGGGGTGGGATGCCCAAGTTAAGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * *
14617510 TGCTGCTGCAACCCTC-GATCTGGTGTGATCTTAGACTGGCAATGAACTCCATATGCCTAAGCCA
131 TGCTGCCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14617574 ACCGACGAAACG-A--GCGGGCGGGCAGGCACTACGCCGTCCAAAGAGACGGGATGCGCAAGCTG
195 ACCGACGAAACGAAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
14617636 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATTCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
14617701 TATGGCTTGTATATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGGCT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
14617766 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
14617831 AGGATTTTTGGCCCCAAAGTTGGTCGACGTGATCCTTGTATTTTTGTTGGGATGCAC-AAAAAAT
455 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
14617895 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
520 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
14617960 ACTTTAATGGCTATTGGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
585 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
14618025 CGAGGTTTGATGAGGGAGAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGTACATCATG
650 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
14618090 TGCGCATA-CCCCCGGCCCCCCCGATCGTCAGAACCCCAA---------T-A-------C--C--
715 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
* ** *
14618133 -G-TCCGACGATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATAT
780 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-CCCGAGCCCAGCATGT
* * * * * * *
14618196 GCTGCCGTAACCCTTGGTCTGATCTGATCTTAGGCAGGGAATGAACTCCGTAAG
844 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
14618250 CTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACAAAACAAGCGTGATGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14618315 AGGCC-GAAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCGGTCGATC
66 CGGCCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
14618379 TTGCTGCCATAACCCTCAGTCTGGTCTGATCTTAGATTAGGAATGAACGCCGTATGCCTGAGCCA
130 CTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14618444 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAGCC
195 ACCGACGAAACGA-AGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
14618509 ATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCCATTC
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
14618574 TTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCGCGTGAAGTTTCATGCCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
14618639 TCGTTTTCTATTTTTCATAATTTTTGAAACTTTGTACGGTTTGGGATTTCTTAAAATTTTTTCGA
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * ** *
14618704 AAGAAGTTTTGGCCCAAAACTTATTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
14618769 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
14618834 CACTTTAATGGCTGCTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAGGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
14618899 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *** ** *
14618964 GTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGAAACCTCAAAGCGGCACCAACA-CAT-GCC-
714 GTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGC-CGGTCAGGTTCTCCG
* * *** * * * **
14619026 -C-AAGC-CC-A-GCAT-GTGCTACCG-C----AACCCT-CGG-TCC-G---GT-CCGATCTTAG
776 GCGATGCTCCGACG-ATGGTGC-CCCGACGAAGAAAAATACGGCACCAGCACATCCCGAGCCCAG
* ** * * *
14619073 -A----CTG--GGAA---T-GAACTCGT---ATGCTTAGACTGGGAATGAACTTCATATG
839 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT-CTTAGACTGGGAATGAACTCCGTATG
* * *
14619119 C-----C---------------------TAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
14619158 CTGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* *
14619223 TGCT-CTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGC-CACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14619287 ACCGATGAAACG-A--GCGGGCGGCCGGGCACTATG-CTGGCCAGAGAGACGGGATCCGCAAGTC
195 ACCGACGAAACGAAGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCC
* *
14619348 GTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
14619413 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** *
14619478 TCATTTTTTATTTTTCATGATTTTTGAAACCATTTGCGGTTCGGGATTTTTTTAAAACTTTTTT-
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAA-TTTTTTC
* * * *
14619542 GGAAGGTGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAA
452 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
14619607 AAATCAGCCAAATACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTTA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14619672 GATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
14619737 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * **
14619802 ATGTGCACACACCCCCCCGACCCCTCCGATCGTCGAAACCGCAAT---GTTGGTCAGGTTCTCCG
712 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * *
14619864 GCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGC
776 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-CCCGAGCCCAGC
* * * * * *
14619929 ATGTGCTACCGTAACCCTCGATCTGGTCTGATCCTAGATTGGGAATGAACTCCGTATG
840 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14619987 CTTAGACTGGGAATGAACTCCGCAAGCCTAAGTCGACCAACGAAATGAGCGCGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
14620052 CGGCCAGA-GGG-GGGATGCGCAAGCCGAGAATCGATCGGGTCCCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * ** *
14620115 TACTGCCGCAACCCT-TGATCTGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14620179 ATCGACGAAACG-AGCGGACGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAAG-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
14620243 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTATGCGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14620308 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGCCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
14620373 CTTGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
14620438 GAAGGAGTTTTGGCCCCAAACATGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
453 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-
* * * *
14620503 AA-TCAACTAAAAACTCGAAGTGTACAATATTTTGTGATCATTTGAAAAAAGTGTCCTCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
14620567 GACACTTTAATGACTACTGGCAGTAAACCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
14620632 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *** * *
14620697 ATGTGCGCACACCCCCTGGCCCCCCCGATCATCAGAACCCCAATGCAATCGATCAGGTTCTCCGA
712 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
14620762 CGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCA
777 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-CCCGAGCCCAGCA
* ** * *
14620827 TGTGCTGTCGCAACCCTCGGTCCAGTTCGATCTTAGATTGGGAATGAACTCCGTATG
841 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14620884 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGAGCTTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
14620949 CGGCCAGAGGGGTGGGATGCGCATGCCGGGGATCGATCGGATCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
14621014 TACTGTCACAACCCTCAGTCTGGTCTGAACTTAGACTAGGAATGAACTCCGTATGCCTTAGCCAA
131 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14621079 CCGACGAAACG-A--GCAGGCGGGCGGGCACTACGTTGGCCAGACAGACGGGATGCGCAAGCCGT
196 CCGACGAAACGAAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
*** *
14621141 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGTCAATGCCATTTTT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
14621206 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGAAC-
326 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG-ACT
* * ** * * *
14621270 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTATGATTTGGGATTTTTTAAAATTTTTTCGGA
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* ** * *
14621335 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTACCTTTGTTGGCATGCACAAAACATT
455 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
14621400 TTAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTGGAAAAAAGTGTCCCCATTTTAGAC
520 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
14621465 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
585 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
14621530 AGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATG
650 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * **
14621595 TGCGCACACCCCCCCCCGGCCCCCCCGATCGTCAGAACCCTAATACCGTCGATCAGGTTCTCCTA
715 TGCGCACA---CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
** * ** *
14621660 CGATGCTCCGGTGATGGTGCCCTGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
777 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-CCCGAGCCCAGCA
* * *** * *
14621725 TGTGCTGCCGCAATCCTCAGTCCACTCCGATCTTAGACTGGGAATAAACTCTGTATG
841 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14621782 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACGAAATGAGCTTACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14621847 CGGCCAGAGGCGCGGGATGCGTAAGCCGGGGATCGATCAGATCCCCCTATACGTGCTG-CTAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * * **
14621911 CAGCTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCA
130 CTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14621976 ACTGACGAAACAAGCAGGCGGGCGGGCGGGCGGGCACTAC-ACAGACCAAAGAGACAGGATGCGC
195 ACCGACGAAAC--G-A--AGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGC
** ***
14622040 AAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
14622105 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** *
14622170 ACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
384 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * ** *
14622235 TTTGGATGAAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
449 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * **
14622300 AAAATTTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATGGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14622365 TCAGACACTTAAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGCTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14622430 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14622495 ATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACAGGTTAGGTTCTC
709 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
14622560 CGGCGATGCTTC-AGCGATGGTGCCCGGGCGAAGAAAAA-A-GTGACACCAGCACATGCCAGAGC
774 CGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATACG-G-CACCAGCACAT-CCCGAGC
* * * *
14622622 CTAGTATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGT
835 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
14622682 TGGCTAAGCC
Statistics
Matches: 8503, Mismatches: 1058, Indels: 450
0.85 0.11 0.04
Matches are distributed among these distances:
835 2 0.00
836 2 0.00
837 2 0.00
838 1 0.00
839 222 0.03
840 268 0.03
841 8 0.00
842 6 0.00
843 151 0.02
844 1 0.00
847 3 0.00
848 3 0.00
849 2 0.00
850 1 0.00
853 1 0.00
855 6 0.00
856 1 0.00
860 2 0.00
862 3 0.00
864 1 0.00
865 1 0.00
866 6 0.00
868 25 0.00
869 25 0.00
870 270 0.03
871 9 0.00
872 1 0.00
873 1 0.00
874 265 0.03
875 201 0.02
876 1 0.00
877 7 0.00
878 24 0.00
881 5 0.00
882 30 0.00
883 2 0.00
884 4 0.00
886 111 0.01
887 162 0.02
888 199 0.02
889 9 0.00
890 264 0.03
891 6 0.00
892 387 0.05
893 579 0.07
894 1018 0.12
895 844 0.10
896 211 0.02
897 426 0.05
898 811 0.10
899 208 0.02
900 46 0.01
901 250 0.03
902 2 0.00
903 140 0.02
904 2 0.00
905 4 0.00
906 467 0.05
907 1 0.00
909 1 0.00
910 4 0.00
911 76 0.01
912 217 0.03
913 204 0.02
914 168 0.02
915 123 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14620894 original size:26 final size:26
Alignment explanation
Indices: 14620858--14620910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14620848 CCAGTTCGAT
*
14620858 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14620884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14620910 C
1 C
14620911 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14621785 original size:26 final size:26
Alignment explanation
Indices: 14621756--14621808 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14621746 CCACTCCGAT
14621756 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
14621782 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
14621808 C
1 C
14621809 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:14622258 original size:906 final size:899
Alignment explanation
Indices: 14619012--14622681 Score: 5068
Period size: 895 Copynumber: 4.1 Consensus size: 899
14619002 CTCAAAGCGG
* * *
14619012 CACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * *
14619077 GGAATGAACT-CGTATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGA
* * * * * ** *
14619141 G-TGTGCGGGTGCTCAGTCTGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
131 GCT-TACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGATCCCCC
*** * * * *
14619205 TCTACGTGCTGTTGATCCTGCTCTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
195 TCTACGTGCTACCGATCCTACTGTCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
* *
14619270 TCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-GGC---CGGGCACTATGCTGGCCAGAGA
260 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGA
* * *
14619331 GACGGGATCCGCAAGTCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
325 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
14619396 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
390 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* ** ** *
14619461 TTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACCATTTGCGGTTCGGGATT
455 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA-T
* *
14619526 TTTTTAAAACTTTTTT-GGAAGGTGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT
519 TTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * * * *
14619590 TTTGGCTTGCACAAAAAAAATCAGCCAAATACTCGAAGTGTACAAGATTTTGTGATCATTTGAAA
583 GTTGGCATGCACAAAAAATATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
14619655 AAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
648 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
14619720 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACC
713 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
14619785 AGCACCCATCGCACATCATGTGCACACACCCCCCCGACCCCTCCGATCGTC-GAAACCGCAAT--
778 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCAG-AACCCCAATGC
* * * * * *
14619847 -GTTGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGG
841 CGTCGATCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGATGAAGAAAAATACGA
* * * * * * * *
14619905 CACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGATCTGGTCTGATCCTAGATTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
14619970 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCAAGCCTAAGTCG-ACCAACGAAATG
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT-GAACCCACGAAATG
*** * * *
14620034 AGCGCGCGGGCGCTCAGCCGGCCAGA-GGG-GGGATGCGCAAGCCGAGAATCGATCGGGTCCCCC
130 AGCTTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGATCCCCC
* * * * * * ** *
14620097 TCTGCATGCTACCGATCCTACTGCCGCAACCCT-TGATCTGATCCAATCTTAGATTGGGAATGAA
195 TCTACGTGCTACCGATCCTACTGTCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAA
* * *
14620161 CTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGACGGGTGGGCGGGCACTACG-TCGGCCAGA
259 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGA
* *
14620225 GAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTT
323 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
14620290 ATGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGA
388 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* ** ** * *
14620355 AGTTTCATGCCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTACGGTTCGAGA
453 AGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA
* *
14620420 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGAGGTGATCCTTGTATTTTT
518 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
14620485 GTTGGCATGCACAAAAACA-ATCAACTAAAAACTCGAAGTGTACAATATTTTGTGATCATTTGAA
583 GTTGGCATGCACAAAAA-ATATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * *
14620549 AAAAGTGTCCTCATTTCAGACACTTTAATGACTACTGGCAGTAAACCTGTAAAATCTCATATGCT
647 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
14620614 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTAC
712 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
14620679 CAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCATCAGAACCCCAATGCA
777 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCC
* * * *
14620744 ATCGATCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATATGG
842 GTCGATCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGATGAAGAAAAATACGA
* * * *
14620802 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTTCGATCTTAGATTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
14620867 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGA
* * *
14620932 GCTTACGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCATGCCGGGGATCGATCGGATCCCCCT
131 GCTTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGATCCCCCT
** * *
14620997 CTGTGTGCTACCGATCCTACTGTCACAACCCTCAGTCTGGTCTGAACTTAGACTAGGAATGAACT
196 CTACGTGCTACCGATCCTACTGTCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * *
14621062 CCGTATGCCTTAGCCAACCGACGAAACGA----GCAGGCGGGCGGGCACTACGTTGGCCAGACAG
261 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAG
14621123 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
326 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
14621188 TGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
391 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * *
14621253 TTAATGGCAAGACGAAC-CATTTTCTATTTTTCACGATTTTCAAAACTTTTTATGATTTGGGATT
456 TTCATGGCAAGACG-ACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATT
* **
14621317 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTACCTTTGT
520 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * * *
14621382 TGGCATGCACAAAACATTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTGGAAAAA
585 TGGCATGCACAAAAAATATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
14621447 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
650 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
14621512 TAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAG
715 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
14621577 CACCCATCGCACATCATGTGCGCACACCCCCCCCCGGCCCCCCCGATCGTCAGAACCCTAATACC
780 CACCCATCGCACATCATGTGCGCACA---CCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCC
* * * * *
14621642 GTCGATCAGGTTCTCCTACGATGCTCCGGTGATGGTGCCCTGGTGAAGAAAAATACGA
842 GTCGATCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGATGAAGAAAAATACGA
* * **
14621700 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATCCTCAGTCCACTCCGATCTTAGACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
14621765 GGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACGAAATGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGA
* * * *
14621830 GCTTACGGGCACTCAGCCGGCCAGAGGCGCGGGATGCGTAAGCCGGGGATCGATCAGATCCCCCT
131 GCTTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGATCCCCCT
* * ** *
14621895 ATACGTGCTGCTAATCC-AGCTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
196 CTACGTGCTACCGATCCTA-CTGTCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
** * * * *
14621959 TCTATATGCCTAAGCCAACTGACGAAACAAGCAGGCGGGCGGGCGGGCGGGCACTACACAGACCA
260 TCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCGGGCACTACGCTGGCCA
* * **
14622024 AAGAGACAGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
321 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
14622089 TTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
386 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
*
14622154 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGG
451 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGG
* * * **
14622219 GATTTTTTAAAATTTTTTTGGATGAAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTT
516 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
14622284 TTTTTGGCATGCACAAAAAATTTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
581 TTGTTGGCATGCACAAAAAATATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
** *
14622349 AAATGGTGTCCCCATTTCAGACACTTAAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
646 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
14622414 TCTTCAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
711 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
14622479 CCAGCACCCATCACACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
776 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGC
* * * * * * ** *
14622544 C-ACAGGTTAGGTTCTCCGGCGATGCTTCAGCGATGGTGCCCGGGCGAAGAAAAA-AGTGA
841 CGTC-GATCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGATGAAGAAAAATA-CGA
* * * * * *
14622603 CACCAGCACATGCCAGAGCCTAGTATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
14622668 GGAATGAACTCCGT
66 GGAATGAACTCCGT
14622682 TGGCTAAGCC
Statistics
Matches: 2457, Mismatches: 283, Indels: 64
0.88 0.10 0.02
Matches are distributed among these distances:
891 1 0.00
892 112 0.05
893 71 0.03
894 98 0.04
895 723 0.29
896 199 0.08
897 187 0.08
898 339 0.14
899 110 0.04
900 2 0.00
901 1 0.00
902 2 0.00
903 143 0.06
905 2 0.00
906 467 0.19
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGA
GCTTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGATCCCCCT
CTACGTGCTACCGATCCTACTGTCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAG
ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTT
TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
GGCATGCACAAAAAATATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGTCG
ATCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGATGAAGAAAAATACGA
Found at i:14623366 original size:709 final size:712
Alignment explanation
Indices: 14621913--14623412 Score: 2212
Period size: 709 Copynumber: 2.1 Consensus size: 712
14621903 TGCTAATCCA
* ** *
14621913 GCTGTCACAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAA
1 GCTGCCACAACCCTCGA-TCCGGTCCAATCTTAGACTGGGAATGAACTCTGT-TGCCTAAGCCAA
* * *
14621977 CTGACGAAACAAGCAGGCGGGCGGGCGGGCGGGCACTACACAGACCAAAGAGACAGGATGCGCAA
64 CCGACGAAAC-AGCA----GGCAGGCGGGCGGGCACAACACAGACCAAAGAGACAGGATGCGCAA
* **
14622042 GTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
124 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
14622107 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
189 TTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCATCACGTCAAGTTTCATGGCAAGAC
* *
14622172 GACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
254 GACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * * *
14622237 TGGATGAAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
319 CGGAAGAAGTTTTCACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
**
14622302 AATTTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATGGTGTCCCCATTTC
384 AATTTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14622367 AGACACTTAAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGCTGTGAG
449 AGACACTTAAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGCTGTGAG
14622432 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
514 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * *
14622497 CATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACAGGTTAGGTTCTCCG
579 CATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCACAGGTCAGGTTCTCCG
*
14622562 GCGATGCTTCAGCGATGGTGCCCGGGCGAAGAAAAAAGTGACACCAGCACATGCCAGAGCCTAGT
644 GCGATGCTTCAGCGATGGTGCCCGGGCGAAGAAAAAAGTGACACCAGCACATGCCAGAGCCTAGC
14622627 ATGT
709 ATGT
* * * *
14622631 GCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTTGGCTAAGCCAACC
1 GCTGCCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGTTGCCTAAGCCAACC
* * * * *
14622696 GACGAAAC-G-A-GCAGGCGGGCGGGCACAACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGG
66 GACGAAACAGCAGGCAGGCGGGCGGGCACAACACAGACCAAAGAGACAGGATGCGCAAGTCGTGG
*
14622758 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* *
14622823 GGCTTGTAAATTCAGACAATGGTCCCTTAAGCCATCCCGTCAAGTTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCAGACAATGGTCCCTTAAGCCATCACGTCAAGTTTCATGGCAAGACGACTCAT
** *
14622888 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
261 TTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGA
* ** *
14622953 ATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGGACAAAAACA-TTC
326 AGTTTTCACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTTC
* *
14623017 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
390 ACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * * *
14623082 TTTAATGGCGACTGGCAGCAAACTTGTAAAATCTCAAATGCTGTTTAAGGGG-TGTGAGTTTTGG
455 TTAAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGCTGTGAGTTCTCG
* *
14623146 AGGTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* *
14623211 CGCACACCCCCCCGACCCCTCCGATCGCCGGAACCCCAATGCTGC-CA-GTCAGGTTCTCTGGCG
585 CGCACA-CCCCCCGACCCCCCCGATCGCCGGAACCCCAATGC--CACAGGTCAGGTTCTCCGGCG
* * *
14623274 ATGCTTC-GACGATGGTGCCCTGGTGAAG-AAAAA-TGCAGCACCAGCACATGCCCGAGCCTAGC
647 ATGCTTCAG-CGATGGTGCCCGGGCGAAGAAAAAAGTG-A-CACCAGCACATGCCAGAGCCTAGC
14623336 ATGT
709 ATGT
* *
14623340 GCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGTTTGCCTAAGTCAAC
1 GCTGCCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTG-TTGCCTAAGCCAAC
*
14623405 CCACGAAA
65 CGACGAAA
14623413 TTAGCGTGCG
Statistics
Matches: 705, Mismatches: 68, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
707 2 0.00
708 85 0.12
709 530 0.75
710 22 0.03
711 1 0.00
714 1 0.00
715 1 0.00
717 20 0.03
718 43 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (712 bp):
GCTGCCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGTTGCCTAAGCCAACC
GACGAAACAGCAGGCAGGCGGGCGGGCACAACACAGACCAAAGAGACAGGATGCGCAAGTCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCAGACAATGGTCCCTTAAGCCATCACGTCAAGTTTCATGGCAAGACGACTCAT
TTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGA
AGTTTTCACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCA
CCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TAAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGCTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
GCACACCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGCGATGC
TTCAGCGATGGTGCCCGGGCGAAGAAAAAAGTGACACCAGCACATGCCAGAGCCTAGCATGT
Found at i:14624259 original size:26 final size:27
Alignment explanation
Indices: 14624229--14624283 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
14624219 GATTGATCTT
* *
14624229 AGACTGGGAATGAACTCGGTATG-CTA
1 AGACTAGGAATGAACTCCGTATGCCTA
14624255 AGACTAGGAATGAACTCCGTATGCCTA
1 AGACTAGGAATGAACTCCGTATGCCTA
14624282 AG
1 AG
14624284 TCAACCCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (27 bp):
AGACTAGGAATGAACTCCGTATGCCTA
Found at i:14627597 original size:26 final size:26
Alignment explanation
Indices: 14627561--14627613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14627551 CCGGTCTGAT
* * *
14627561 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14627587 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14627613 C
1 C
14627614 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14628131 original size:903 final size:898
Alignment explanation
Indices: 14625927--14632882 Score: 6856
Period size: 888 Copynumber: 7.8 Consensus size: 898
14625917 GCCCAGCATG
** * * * * **
14625927 TGCTGCCGCAACCCTCGGCCCGGTCTGATCTTAGACTAGGAATGAACTCTGCATGCCTAAAACAA
1 TGCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *** * *
14625992 CCGACGAAACAAGCGGGCGGGCAGTCGGGCGGGCACTATTTCAGCCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAGCGGGCGGGCGGT--GGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * **
14626057 GCCGTGGATCGATAGGGTTGTAGGTGGG-TTAGGCACATCTTCTTATTTTTGCATGCTGATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14626121 TTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
14626186 GACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTC-ATGATTTTTTAAAAATTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTT-AAAATTTT
* * **
14626250 TT-GGAAGGATTTTTGGCACCGTACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
321 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14626314 AAAAATTCAGCTGAAAAA-TCGAAGTGTACAATATTTGGTGACCATTTGAAAAAGGTGTCCCCAT
386 AAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCAT
14626378 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
450 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
**
14626443 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAATACCCATCGCA
515 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
14626508 CATCATGTGCGCATACCCCCCCTGGCCCCCCT-ATTGTCGGAACCTCAATGCCG-CCGGTCAGGT
580 CATCATGTGCGCACA-CCCCCC-GGCCCCCCTGATCGTCGGAACCCCAATGCCGTCC-GTCAGGT
* * * * * * *
14626571 TCTCCGGCGATGCTCCGACGACGGTGCCCCGATGAAGAAAAATGCGGCACCAGTACAT-CCTCAA
642 TCTCCGACGATGCTCCGGCGATGGTGCTCTGA-GAAGAAAAATGCGGCACCAGCACATGCC-CGA
* * * * *
14626635 GCCCAGCATGTGC-GATCGCAACCCTCAGCCCGGTTTGATCTTAGACTGGGAATGAACTCCATAT
705 GCCCAGCATGTGCTG-TCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA-TTCGTAT
* * *
14626699 GCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAA
768 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAA
* * * ** *
14626764 CCGGCCAGAGCGGCGGGATTCGCAAGCCGGGGATCGGCCGGGTGCCCCTCTATGTGCTGCCAATC
833 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
14626829 C
898 C
* * * * *
14626830 TACTACCGTAACCCTT-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTTAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14626894 ACCGAC-AAA--A-----C--G-GGT-G-GGCACTACGTCGGCCAGAGAAACGGGATGTGCAAGC
65 ACCGACGAAACGAGCGGGCGGGCGGTGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
14626946 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTACAT-CCTGATCCCAT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC-AATGCCAT
* * *
14627010 TTTTATGGCTTGTAAAATCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * * * *
14627075 ACCCGTTTTCTTTTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTGTGTAAAATTTTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *** * *
14627140 GGAAGGATTTTTGGCACCGTCCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
324 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
14627205 AATTGAGCTGAAAACTCGAAGTGTACAACATTTTGTCACCATTTGAAAAAGGTGTCCCCATTTCA
389 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCA
14627270 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
14627335 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
519 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
14627400 ATGTTCGCACACCCCCCAGGCCCCCCTGATCGTCGGAACCCCAATGCTGTCCGTCAGGTTCTCCG
584 ATGTGCGCACACCCCCC-GGCCCCCCTGATCGTCGGAACCCCAATGCCGTCCGTCAGGTTCTCCG
* * * *
14627465 ACGATGCTCCGGCGATGGTGCTCTGACAAGAAAACTGCGGCACCAGCACATACCCGAGCCCAACA
648 ACGATGCTCCGGCGATGGTGCTCTGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
14627530 TGTACTGTCGCAATCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAAACT
713 TGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA-TTCGTATGCTTAGACT
* * * *
14627595 GGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAACCGGCTAGA
777 GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGA
* ** *
14627660 GGGGTGGGATGCATAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
842 GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14627717 TACTGTCGCATCCCTTAGTCCGGTCTTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * **
14627782 TCGATGAAACGAGCGGGCGGGCGGGTGAGCAGGCACTACATCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGC-GGTG-GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14627847 GCCGTGGATCGATACGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14627912 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14627977 GACTGGTTTTTTATTTTTCACAATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * * *
14628042 CAGAAGAAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGTACAAAA
323 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
14628107 AAATCCAGGTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTC
* *
14628172 AGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
14628237 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * ** *
14628302 CATGTGCTGTCGATCTTGCCGCC-GCAACCCTCGATC--CGG---TCCAAT--C-T---T-A-G-
583 CATGTGC-G-C-A-C-ACCCCCCGGCCCCCCT-GATCGTCGGAACCCCAATGCCGTCCGTCAGGT
* ** ** ** * * * ****
14628352 ACTGGGA--AT-CAACTCCG-T-ATGC-CTAAGCCAACCGACGAAATGAGCGGGCGGGTGTGCAC
642 TCTCCGACGATGCTCCGGCGATGGTGCTCTGAG--AA--GA-AAAAT--GC-GGC--ACCAGCAC
* * * * * * **** ** ** *
14628411 -TACGCCG-GCCAGAGAGACGGGATGT-GCAATCAGGGGGTGTGAGTTCTCGAGGTTTGAC-GAG
697 ATGC-CCGAGCC-CAG-CATGTGCTGTCGCAA-CCCTCGGTCCG-G-TCT-GATCTTAGACTG-G
* **** * ** ** * * * * *
14628472 TGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT-CATGTGCGC-ACA--CC
754 -GA-ATGAATTC-GTAT----GCTTAG-ACTGGGA---AT-GAAC-TCCGTATGC-CTA-AGTCA
* * **** * * * * *** * *
14628533 CCCCGGCCCCCCCGACCGT-CGGAAC-CCCAATGCCGTTGGTCAG-GCTCTCCAGCGATGGTGCC
804 ACCC--ACAAAACGAGCGTGCGG-GCGCTCAA--CC---GGCCAGAG--GGGC-GGGAT-GCG-C
** *** * ***** * ** ** * * *
14628595 CCGACAAAGAAAAATACAGAACCAGCACATGTCGAGC--CCAGCAT-G
856 AAG-CCGGGGATCGGCCGGGTCCCCCTC-TG-CGTGCTGCC-G-ATCC
* ** * * *
14628640 TGCTGCCGTAACCCTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
14628705 TCGACGAAACGAGCGGGCGGGCGGGTCGGGCGGGCACTACGCCGGACCAGAGAGACGGGAATGCG
66 CCGACGAAACGAGCGGGCGGGC-GGT--GGC-GGCACTACGCCGG-CCAGAGAGACGGG-ATGCG
* * * * *
14628770 CAAGCCGTGGATCGATAGAGTTGGTAGGGTGAGTTT-CGCAGATCTTCATATTGCTGCCATGGCC
125 CAAGCCGTGGATCGATAG-GGTGGTA-GGTGGGTTTAGGCACATCTTCATATTTCTG-CAT-GCC
* * *
14628834 GATGCCATTTTTATGGCTTGTAAA-TCATTACAATGGGTCCCTGAAGCCTTCACGTGAAG-TTAA
186 AATGCCATTTTTATGGCTTGTAAATTCA-TACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * *
14628897 T-GCAAGACGACTACATTTTCTATTTTTTCATGATTTTCAAAACTTTTTGCGATGTC-AGGATTT
249 TGGCAAGACGACT-CGTTTTCTA-TTTTTCACGATTTTTGAAACTTTTTACGGT-TCGA-GA-TT
* * * * * *
14628960 TTTTAAAATTTTTTTTGGAAGGATTTTTTCGCCCCGAACTTGGTATACGTGATCCTTGTATTTTT
309 TTTTAAAA-TTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* *
14629025 TTTGGCCATGC-CACAAAAAATTCAGCTGAAAACTCGAAGTGTTACAAGATTTTGTGACCATTTG
372 GTTGG-CATGCACA-AAAAAATTCAGCTAAAAACTCGAAGTG-TACAAGATTTTGTGACCATTT-
* *
14629089 GAAAAAGGTGTCCCCATTCCAGGCACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCCAAA
433 GAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAA
*
14629153 TGGCTCTTTAA-GGGGTGTGGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
497 T-GCTCTTTAAGGGGGTGT-GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
14629217 AAGTACCAGCACCCATCGCACATC-TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCC
560 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCTGATCGTCGGAACCC
* * * * *
14629281 CAATGCCGTCGGTCAGGTTCTCCGGCGATGGTCCGACGATGGTGC-CTCGATGAAGAAAAATGCA
624 CAATGCCGTCCGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCTCT-GA-GAAGAAAAATGCG
* * * *
14629345 GCACCAGCACATGCCCAAGCCCAGCACGGGCTGTCGGAACCCTCGGTCCGGT-TCGATCTTAGAC
687 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCT-GATCTTAGAC
* * *
14629409 TGGGAATGAACTTCGTATGCTTAGACTAGGAATAAACTCTGTATGCCTAAGTCAACCCACAAAAC
751 TGGGAATGAA-TTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAC
* * * * ** *
14629474 GAGCGTGTGGGCGTTCAACCGGCCAGAGGGGCGGGATTCACAAGCCGAAGATCGACCGGGT-CCC
815 GAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC
* * * * * *
14629538 CTTTACATGCTACCAATCT
880 CTCTGCGTGCTGCCGATCC
** * * *
14629557 TGCTGCCATAACCC-TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATTTGCCTAAGCCA
1 TGCTGCCGCAACCCTTAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
14629621 ACCAACGAAACGAGTGGGTAGGC----G-GGCACTACGCCGGCCAGAGAAACGGGATGTGCAAGC
65 ACCGACGAAACGAGCGGGCGGGCGGTGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
14629681 CTTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCGTT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14629746 TTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
14629811 CTCGTTTTCTATTTTTCACGATTTTTGAAATTTTTTGCTATTCGAGATTTTTTAAAATTTTTTCA
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
*
14629876 AAAGGAGTTTTGG-CCC---C-------A-A--A--C-----------TT-G--T--ACAAAAAA
325 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
14629909 ATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAACA-ATGTCCCCATTTTA
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA-AGGTGTCCCCATTTCA
* *
14629973 GACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * ** * *
14630038 TCTCGAGGTTTGATGAGGCATAGGGGGGCAATATAAGGGCCAAAAACCAACACCCATCACACATC
519 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * **
14630103 ATGTGCGCACACCCCCCGGCCCCCAC-GATCGCCGGAACCCCATTGTCGTTGGTCAGGTTCT-C-
584 ATGTGCGCACACCCCCCGGCCCCC-CTGATCGTCGGAACCCCAATGCCGTCCGTCAGGTTCTCCG
* * * ** *
14630165 -CG--G-T-----GATGGTGCTCCGGTGAAGAAAAATGCAGTTCCAGCA-ATGCCCGAGCCTAGC
648 ACGATGCTCCGGCGATGGTGCT-CTGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
14630220 ATGTGCTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
712 ATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA-TTCGTATGCTTAGAC
** ** * **
14630285 TGGGAATGAACTCCGTATGTGTAAGT---CCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAG
776 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAG
* * * *
14630347 AGGGGTGGGATGCGCAAGCTGGGGATCGGCGGGGTCCCCCTCTACGTGCTGCCGATCC
841 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * ** **
14630405 TACTGTCGTAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14630470 CCGACGAAACAAGCGAGCGGGC----G-GGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCC
66 CCGACGAAACGAGCGGGCGGGCGGTGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
14630530 GTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATACTTTCTGCATGCCAATGCCATT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATT
* * * *
14630595 TTTATGGCTTGTAAATTCATACAACGATCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGATGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14630660 CTTGTTTTCTATTTTTCATGATTCTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * *
14630725 GAAGGAGTTTTGGCCCCAAACATAGTAGACATGATCCTTGTATTTTTGTTGGCATTCATAAAAAA
325 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
14630790 AATCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAG
* * * *
14630855 ATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCGAATGCTCTTTAAGGGGGAGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14630920 CTTTGAGGTTTTGATTGAGGGATA-GGGG-CAATATAAGGGCCAAGTACCAGCA-CCATCGCACA
520 C-TCGAGG-TTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
14630982 CCATGTGCGTACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATACCG-CCGATCAGGTTCTC
582 TCATGTGCGCACACCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCCG-TCAGGTTCTC
* * * * ** * *
14631046 CTACGTTGCTCCGGCGATGGTGCCCCGATGAAGAAAAATATGACACTAGCACATGCCCGAGCCCA
646 CGACGATGCTCCGGCGATGGTGCTCTGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
14631111 GCATGTGCTGTTGCAACCCTCGGTCC-G---G----T---C------------CG-AT-CTTAGA
710 GCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAATTCGTATGCTTAGA
* * * * * *
14631151 CTGGGAATGAACTCCGTATTCCTAAGTCAACCCATAAAATGAACGTGCGGGCGCTCAGCCAGCCA
775 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCA
* * * *
14631216 GAGGGGCGGGATGCCCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCAATCC
840 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * *
14631275 TGCTGCCGCAACCCTCAGTTTGGTGTGCTCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14631340 CTGACAAAACGAGCGGACGGGCGGGTGGGCAGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGC-GGT-GGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * **
14631405 GTCGTGGATCAATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTGTGCCTGCCAATGAAA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14631470 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGAG
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
14631535 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTGAAATTTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* **
14631600 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTTTCATGCACAAAA
323 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
14631665 ATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTC
*
14631730 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14631795 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCGTCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
14631860 CATGTGTGCACACCCCCTCGG-CCCCTTCGATCGCCGAAACCCAAATGCCATCAGTCAGG---T-
583 CATGTGCGCACACCCCC-CGGCCCCCCT-GATCGTCGGAACCCCAATGCCGTCCGTCAGGTTCTC
* * * *
14631920 ------T-CTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
646 CGACGATGCTCCGGCGATGGTG-CTCTGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** * * * * * * *
14631978 GCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATTAACTCTATATGCTTAG
710 GCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAATTC-GTATGCTTAG
* * ** **
14632043 ACTGGCAATCAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCTTTCAGTCGGCC
774 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCC
* * ** *
14632108 AGAAGGGCGAGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTATGCGTGCTGCCGATCC
839 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14632168 TGCTGCCACAACCCTT-GATCTGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCA
1 TGCTGCCGCAACCCTTAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14632232 ACCGATGAAACGAGCGGACGGGC-G-AGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAG
65 ACCGACGAAACGAGCGGGCGGGCGGTGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
14632295 -CGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACGTGGCAATGCCAT
129 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * * *
14632359 TTTTATGGCCTGTAAATTCATATAATGGTCCCTTAATCCTTCACGTGAAATTTTATGGC-AGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
14632423 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCTAGATTTTTTTTAAATTTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTT
* * * * * *
14632488 CGGAATGATTTTTGGCCCTAAAGTTGGTAGATATGATCCTTGTATTTATGTTGGCATGCACAAAA
323 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
14632553 AAATTCACCTAAAAACTCG-AGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGT-CCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTC
* *
14632616 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATCAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
14632681 TTCTCTATGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
14632746 CATGTGTGCACACCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCG-CTGGCCAGGTTCTC
583 CATGTGCGCACA-CCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTC-CGTCAGGTTCTC
* * * * *
14632810 CGACGATGCTCCGGCGATGGTGCCCCGATGAA-AAAAATGTGACACCAGCACATGCCCAAGCCCA
646 CGACGATGCTCCGGCGATGGTGCTCTGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
14632874 GCATGTGCT
710 GCATGTGCT
14632883 ACCGTAACCC
Statistics
Matches: 5015, Mismatches: 761, Indels: 561
0.79 0.12 0.09
Matches are distributed among these distances:
847 56 0.01
848 157 0.03
849 149 0.03
850 94 0.02
851 29 0.01
852 1 0.00
853 2 0.00
856 1 0.00
857 1 0.00
859 2 0.00
860 1 0.00
861 2 0.00
862 114 0.02
863 55 0.01
864 42 0.01
865 26 0.01
866 2 0.00
867 99 0.02
868 8 0.00
869 2 0.00
870 155 0.03
871 3 0.00
874 9 0.00
875 11 0.00
876 31 0.01
877 342 0.07
878 101 0.02
879 3 0.00
880 3 0.00
881 184 0.04
882 29 0.01
883 9 0.00
884 11 0.00
885 2 0.00
886 166 0.03
887 429 0.09
888 653 0.13
889 43 0.01
890 6 0.00
891 7 0.00
892 31 0.01
893 224 0.04
894 4 0.00
895 6 0.00
896 51 0.01
897 33 0.01
898 14 0.00
899 16 0.00
900 15 0.00
901 13 0.00
902 60 0.01
903 547 0.11
904 27 0.01
905 27 0.01
906 27 0.01
907 20 0.00
908 21 0.00
910 1 0.00
911 5 0.00
912 16 0.00
913 11 0.00
914 2 0.00
916 7 0.00
917 77 0.02
918 4 0.00
919 9 0.00
920 3 0.00
921 1 0.00
922 15 0.00
923 84 0.02
924 24 0.00
925 15 0.00
926 22 0.00
927 24 0.00
928 35 0.01
929 54 0.01
930 54 0.01
931 4 0.00
932 10 0.00
933 25 0.00
934 52 0.01
935 28 0.01
936 42 0.01
937 51 0.01
938 86 0.02
939 3 0.00
940 11 0.00
941 3 0.00
942 1 0.00
943 13 0.00
944 12 0.00
945 6 0.00
946 3 0.00
947 5 0.00
949 6 0.00
950 5 0.00
951 1 0.00
952 7 0.00
953 1 0.00
954 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TGCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGTGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCCGTCAGGTTCTCCGACG
ATGCTCCGGCGATGGTGCTCTGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAATTCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:14629431 original size:26 final size:26
Alignment explanation
Indices: 14629402--14629454 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14629392 CCGGTTCGAT
* *
14629402 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATAAACTCT-GTATG
14629428 CTTAGACTAGGAATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
14629454 C
1 C
14629455 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:14630281 original size:26 final size:26
Alignment explanation
Indices: 14630252--14630303 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14630242 CCGATCTGAT
14630252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14630278 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14630304 TGTAAGTCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14632063 original size:26 final size:26
Alignment explanation
Indices: 14632012--14632064 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14632002 CTGGTCCGAT
* *
14632012 CTTAGACTAGGAATTAACTCTATATG
1 CTTAGACTAGGAATCAACTCCATATG
*
14632038 CTTAGACT-GGCAATCAACTCCGTATG
1 CTTAGACTAGG-AATCAACTCCATATG
14632064 C
1 C
14632065 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:14632548 original size:888 final size:886
Alignment explanation
Indices: 14629901--14632892 Score: 3760
Period size: 877 Copynumber: 3.4 Consensus size: 886
14629891 CCAAACTTGT
* *
14629901 ACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAACAA-TGTCC
1 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA-AAGTGTCC
* * *
14629965 CCATTTTAGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * **
14630030 GTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGGCAATATAAGGGCCAAAAACCAACACCCAT
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCAT
* * * * * *
14630095 CACACATCATGTGCGCACACCCCCCGGCCCCCACGATCGCCGGAACCCCATTGTCG-T-TGG-T-
195 CACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCAAATGCCGATCAGGTTC
* * * ** *
14630156 C-AGGTTCTCCGGTGATGGTGCTCCGGTGAAGAAAAATGC-AGTTCCAGCA-ATGCCCGAGCCTA
260 CGAGGTTCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCA
* * *
14630218 GCATGTGCTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
324 GCATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGAAT-AACT-C-TATGCTTAG
** *
14630283 ACTGGGAATGAACTCCGTATGTGTAAGT---CCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCC
385 ACT-GGAAT-AACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTCAGTCGGCC
* * * * *
14630345 AGAGGGGTGGGATGCGCAAGCTGGGGATCGGCGGGGTCCCCCTCTACGTGCTGCCGATCCTACTG
448 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* * ** *
14630410 TCGTAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGAC
513 CCGCAACCCTCAGTCTGATCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
* * *
14630475 GAAACAAGC-GA---GCGGGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGAT
578 GAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
14630536 CGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATACTTTCTGCATGCCAATGCCATTTTTATG
643 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATG
* * * *
14630601 GCTTGTAAATTCATACAACGATCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTT
707 GCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGC-AGACGACTCGTT
* * * *
14630666 TTCTATTTTTCATGATTCTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
771 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * *
14630731 GTTTTGGCCCCAAACATAGTAGACATGATCCTTGTATTTTTGTTGGCATTC
836 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* * * *
14630782 ATAAAAAAAATCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
14630847 CATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCGAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
14630912 AGTGAGTTCTTTGAGGTTTTGATTGAGGGATA-GGGG-CAATATAAGGGCCAAGTACCAGCA-CC
131 TGTGAGTTC-TCGAGG-TTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCC
* * * *
14630974 ATCGCACACCATGTGCGTACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATACCGCCGATCA
193 ATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAA-CCCAA-A-TGCCGATCA
* * ** *
14631039 GGTTCTCCTACGTTGCTCCGGCGATGGTGCCCCGATGAAGAAAAATATGACACTAGCACATGCCC
255 GG-T-TCCGAGGTT-CTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCC
*** *
14631104 GAGCCCAGCATGTGCTGTTGCAACCCTCGGTCCGGTCCGATCTTAGACTGG-----------G--
317 GAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGAATAACTCTATGCT
* * * *
14631156 -A-A-T-G---AACTCCGTATTCCTAAGTCAACCCATAAAATGAACGTGCGGGCGCTCAGCCAGC
382 TAGACTGGAATAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTCAGTCGGC
* * * *
14631214 CAGAGGGGCGGGATGCCCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCAATCCTGCT
447 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * *
14631279 GCCGCAACCCTCAGTTTGGT-GTGCTCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTG
512 GCCGCAACCCTCAGTCTGATCG-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCG
* * * *
14631343 ACAAAACGAGCGGACGGGCGGGTGGGCAGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGTC
576 ACGAAACGAGCGGACGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * **
14631408 GTGGATCAATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTGTGCCTGCCAATGAAATTT
637 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
14631473 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGAGGAC
702 TTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGG-CAGACGAC
* * * *
14631538 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTGAAATTTTTTCGA
766 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
**
14631603 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTTTCATGC
831 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* *
14631659 ACAAAAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
14631724 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
14631789 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCGTC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATC
* * **
14631854 GCACATCATGTGTGCACACCCCCTCGGCCCCTTCGATCGCCGAAACCCAAATGCC-ATCA-G-T-
196 ACACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGAAACCCAAATGCCGATCAGGTTC
*
14631915 C-AGGTTCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
260 CGAGGTTCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
*
14631979 CATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATTAACTCTATATGCTTAGA
325 CATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGAA-TAACTC--TATGCTTAGA
* * **
14632044 CTGGCAATCAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCTTTCAGTCGGCCA
386 CTGG-AAT-AACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTCAGTCGGCCA
* * ** *
14632109 GAAGGGCGAGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTATGCGTGCTGCCGATCCTGCTGC
449 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
* * * * *
14632174 CACAACCCT-TGATCTGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCGAT
514 CGCAACCCTCAG-TCTGATCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
* *
14632238 GAAACGAGCGGACGGGCGAGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAG-CGTGGAT
578 GAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
14632302 CGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACGTGGCAATGCCATTTTTATGG
643 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
14632367 CCTGTAAATTCATATAATGGTCCCTTAATCCTTCACGTGAAATTTTATGGCAGACGACTCGTTTT
708 CTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAGACGACTCGTTTT
* * * *
14632432 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCTAGATTTTTTTTAAATTTTTTCGGAATGAT
773 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAG
* * * *
14632497 TTTTGGCCCTAAAGTTGGTAGATATGATCCTTGTATTTATGTTGGCATGC
837 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* * *
14632547 ACAAAAAAATTCACCTAAAAACTC-GAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGT-CC
1 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
14632610 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATCAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
14632675 TGTGAGTTCTCTATGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATC
* ** * * *
14632740 ACACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCTGGCCAGG
196 ACACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGAAACCCAAATGCCGAT---CAGG
* * * *
14632805 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAA-AAAAATGTGACACCAGCACATGCCCAA
257 -T-TCCGA-GGTTCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGA
14632869 GCCCAGCATGTGCTACCGTAACCC
319 GCCCAGCATGTGCTACCGTAACCC
14632893 ACAAAAGGAG
Statistics
Matches: 1818, Mismatches: 218, Indels: 135
0.84 0.10 0.06
Matches are distributed among these distances:
867 105 0.06
868 6 0.00
869 1 0.00
870 149 0.08
871 3 0.00
873 2 0.00
874 16 0.01
875 13 0.01
876 29 0.02
877 341 0.19
878 97 0.05
880 1 0.00
881 168 0.09
882 31 0.02
883 9 0.00
884 11 0.01
885 2 0.00
886 168 0.09
887 90 0.05
888 196 0.11
889 37 0.02
890 3 0.00
891 5 0.00
892 36 0.02
893 221 0.12
894 2 0.00
895 1 0.00
896 50 0.03
897 25 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATC
ACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCAAATGCCGATCAGGTTCC
GAGGTTCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
ATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGAATAACTCTATGCTTAGACTGGA
ATAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC
GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACC
CTCAGTCTGATCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAG
CGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAGACGACTCGTTTTCTATTTTT
CACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
Found at i:14637298 original size:26 final size:26
Alignment explanation
Indices: 14637269--14637321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14637259 CTGATCCAAT
14637269 CTTACACTGGGAATGAACTCTGCATG
1 CTTACACTGGGAATGAACTCTGCATG
* * *
14637295 CTTAGATTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGCATG
14637321 C
1 C
14637322 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGCATG
Found at i:14639097 original size:26 final size:26
Alignment explanation
Indices: 14639061--14639113 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14639051 CTGGTCCGAT
14639061 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14639087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14639113 C
1 C
14639114 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14639998 original size:26 final size:26
Alignment explanation
Indices: 14639962--14640014 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14639952 CCGGTTCGAT
14639962 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14639988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14640014 C
1 C
14640015 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14641795 original size:26 final size:26
Alignment explanation
Indices: 14641766--14641818 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14641756 CCGGTCCGAT
14641766 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACTTGG-AATGAACTCCGTATG
*
14641792 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
14641818 C
1 C
14641819 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:14642312 original size:903 final size:903
Alignment explanation
Indices: 14636396--14645599 Score: 11944
Period size: 903 Copynumber: 10.2 Consensus size: 903
14636386 TCAATCTGAT
* *
14636396 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14636461 TGACCAGAGGGGCGGGATGCGTAAGTCGGGGATCGACCGGGTCCCCGTCTGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
14636526 TGTTACCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATTAACTCCGTATACCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** * * * * * *
14636591 CTGACGGAATGA----GCGGGCGAGCGGTTGGGCACTACGTCGACCAAAAAGACGAGATGCGTAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
14636652 GCCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTTTGCGTGCCAATACCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
14636716 TTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * * *
14636781 GACTTGTTTTCTATTTTTCACAATTTTTGAAACTTATTACGTTTCGATATTTTTAAAAAAATTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTT-TAAAATTTTT
* ** * *
14636846 TTGGAAGGAGTTTTGGCCTCAAAAATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTACAAA
455 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14636911 AAAATGCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14636976 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14637041 GTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATATGGGCCAAGTACTAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
14637106 TCATGTGCGCACACCCCCCAGCCCACCTGATCGCCGGAACCCCAACGCTGCCGGTCAGGTTCTCC
715 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* *
14637171 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
780 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * * * *
14637236 CATGAGCTACCGCAACCCTCGGTCTGATCCAATCTTACACTGGGAATGAACTCTGCATG
845 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14637295 CTTAGATTGGGAATGAACTCTGTATGCCTAACTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * * *
14637360 TGACCAGATGAGCCGGATGCACAAATCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14637425 TACTACCGTAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
14637490 CCGACGAAATGAACGGACGGGCAGGAGGACGGGCACTACGCCGGCCAGAGAGATGGGATGCACAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * ***
14637555 GCTGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * *
14637620 TTTCTATGGATTGTACATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ***
14637685 GACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * * * *
14637750 CGGAAGGCA-TTTTGGCCTCAAACTTGGCAGACTTGATCCTTGTATTTTTTTTGGCGTGCATAAA
456 TGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
14637814 AAAATTCAACTAAAAACTCGAAGTGTACCAGATTTTGGGTCCATTTGAAAAATGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14637879 CAGACACTTTAATGGCTACTGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14637944 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGTCAACTACCAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * * * *
14638009 TCATGTGCGCACACCCCTTGGCCCACACGATCG-TCAGAACCTCAATGCCGTCGGTCAGGTTCTC
715 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTC
* *
14638073 CGGCGATGCTCCGACGATGGT-----------G-----TGCGGCACCAGCACATGCCTGAGCCTA
779 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
14638122 GCATGTGCTGCCGTAACCCTCGATCCGGTCCGTTCTTAGACTGGGAATGAACTTCGTGTG
844 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14638182 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCCTGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14638247 CGGCCAGAGGGGCGGGATGCGCAAGGCGGGGATCGACCGAGTCCCCCTCTACGTGCTGCCTATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14638312 TGCTGCCGCAACCATCGGTCCAGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14638377 CCGACGAAACGAGCGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
**
14638442 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
14638507 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * * *
14638572 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGACTTTTTAAAGTTCTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
14638637 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGAATGCACAAAA
456 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * ** *
14638702 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTATGACCATTTGAAAATGGTGTCCCCATTTT
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
14638767 AGACACTTTAATGGCTGCTAGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGCGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
14638832 TTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGTACCAATCACACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
14638897 CATGTGCGCACACACCCCCTCGGCCTCCCTGACCGCTGGAACCCCAATGTCGTCGATCAGGTTCT
716 CATGTGCG--CACACCCCC-CGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
14638962 CCGGCGATGCACCAATGATGGTG-CCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
778 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
14639026 AGCATGTGCTGCCACAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
843 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14639087 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
14639152 AGGCCAGA--GGTGGGATACGCAAGCC-GGGATCGGTCGGGTCCCACTCTGCGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
14639214 TGCTACCGTAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
14639279 CCGTCGAAACGAGCGGGCGGGTAGGCGGGCGGACTCTACGCCGGCCAGAGAGACGGGATGCGTAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
14639344 GCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCTAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
14639409 TTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
14639474 GACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGATTCAAAATTTTTTAGAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * * * * *
14639539 TAGAAGGAGATTTGGTCCCAAACTTGTTACATGTGATCCTTGTTTTTTTGTTGGCATGCATAAAA
456 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
14639604 AAATTTAGCTAAAAAATCGAAAGTGTACAAGGTTTTGTGACCATTTGAAAAAATTG-CCCCAATT
521 AAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATT
* *
14639668 CCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* ** *
14639733 AGTTCTGGAATTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14639798 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCTAATGCCATCGGTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * ** * *
14639863 TGGTGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCA
779 CGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
14639927 AGCATGTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATG
843 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * ** * *
14639988 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGTGCTCACTCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14640053 CGGCCAGAGGGGCGGGATGTGCAAGCAGGGGATCGGTCAGGTCCCCCTCTGCATGCAGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
14640118 TGCTACCGCAACTCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14640183 CCGACGAAACGAGCAGGCGGGTGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
14640248 GCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
14640313 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14640378 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCGGGATTTTGTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
14640443 CGGAAGGAGTTTTGGCCCTAAACTTGGCAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAA
456 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
14640508 ACATTCAGCTAAAAACTAGAAGTGTATAAGATTTTGTGACCGTTTGAAAAAAAAGTGT-CCCATT
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG--AAAAAAGTGTCCCCATT
* *
14640572 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14640637 AGTTCTAGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
14640702 ATCATGTGCGCAGACCCCCCAGGCCCCCCGGATCG-TCGGAACCCCAATGCCGCCGGTCAGGTTC
714 ATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTC
* * ** * * *
14640766 TCTGTCGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCCCAGCC
777 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** * * * ** * *
14640831 CAGCAAGTGCTGTCATAACCGTCAGTCCGGTCTGATCTTAGGTTAGGAATGAAGTCCGTATG
842 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14640893 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACAAGCGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * *
14640958 CGGCCAGAGGGGCGGGATGCGTAAGTCAAGGATTGGTCGGGTCCCCCTCTACGTGTTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14641023 TGCTACCGCAACCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATACCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14641088 CCGA-TAAA--A-CGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14641149 GCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
14641214 TTTTTATGGCTTGTAAATTGATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14641279 GACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGCAGTTTC-AGATTTTTTAAAATTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTCGAGATTTTTTAAAATTTTT
** * ** * *
14641343 CCGAAAGGTTTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
455 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14641408 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14641473 CAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14641538 GTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATATGGGCCAAGTATCAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14641603 TCATGTGTGCACACCCCCCGGCTCCCTCGATCGCTGGAACCCCAATGCCGTCGGTCAAGTTCTCC
715 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
14641668 GACGATGCTCCGGCGATGGTTCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
780 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
14641733 CATGTGCTGCCACAACCCTTGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATG
845 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14641792 CTTAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14641857 CGGCCAGAAGGGTGGGATGCGAAAGCCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** *
14641922 TCCTGCTGCAACCCTCGGTCTAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAT
131 TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * ** * * *
14641987 TTGAGGAAACGAGCGGGTAGGCGGGCAGGCGGGCATTACGCCGGCTAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
14642052 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
14642117 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14642182 GACTCGTTTTCTATTTTTCACGATTCTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * * * *
14642247 TGTAAGGCGTTTTGGCCCAAAACTTTGTAAAGGTGATCCTTGTATTTTTGTTGGCATGTACAAAA
456 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14642312 AACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTC
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14642377 AAACACTTTAATAGCTACTGGCAGCAAACCTGTAAAACCT-AAATTGCTCTTTAAGGGGGTGTGA
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGTGTGA
* * * * * *
14642441 GTTCTCAAGGTTTGCTGAGAGATAGGGGGCCAATATAAGAGCCAAGTACCAGCAGCCATCACACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
14642506 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGAAACCCCAATGCCGTCGATCAGGTTCTCT
715 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * * ** * * * *
14642571 GGCGATTCTCCGACGATGGTGGCCTGGCGAAGCAAAATACAACTCCAGCACATGCTCAAGCCAAG
780 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * * *
14642636 CATGTGCTGTCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCATATC
845 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
14642695 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGGGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14642760 C-ACCAGA-GGGCGGGATGCGCAAGCCGGGGATCGATC-GGTCCCCTTCTGCGTGCTACTGAT-C
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * **
14642821 TGGCTGCCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGTATGAACTCCACATGCCTAAGCCA
131 T-GCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *** *
14642886 ATCGACGAAACGA----GCGGGCGGACGAGCGAAAACTACGCTGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
14642947 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
**
14643012 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * *
14643077 TGACTCGTTTTCTATTTTTTTCGAATTTTGAAACCTTTTACGGTTCGAGATTTTTTCAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
14643142 TTGGAAAGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGAACAAA
455 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14643207 ACAATTCAG-TAAAAAACTTGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATT
520 AAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14643271 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAACGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
14643336 AGTTCTGGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
14643401 ATCATGTGCGCACACCCTCCCGG-CCCCCCGATCACCAGAACCCTAATGCCGTCGGTGAGGTACT
714 ATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * * *
14643465 CAGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGTACCAGCACATGTCTGAGCCT
778 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
14643530 AGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGTTCTTAGACTGGGAATGAACTCCGTATG
843 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14643591 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
14643656 CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC---CT---G-T--
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14643712 TG---CCGTAACTCTCGGTCCGGTC-AGATCTTAGACTAGGAATGAACTCCGTATCCCTAAGCCA
131 TGCTACCGCAACCCTCGGTCCGGTCTA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * * *
14643773 ACCGACGAAACAAACAGGAGAGCGGGCGGGTGGGCAGTTCGTCGGCCAGAGAGACGGGATACGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14643838 AGCCGAT-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCGATGT
260 AGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * * *
14643902 AATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCGTTCACGTGAAGTATCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
14643967 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* *** *
14644032 TTTGGAAGAAGTTTTGGCCCCAAACTCAATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
454 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14644097 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14644162 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14644227 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
14644292 ATCATTTGCGCACACCCCCCCTGGCCCCCCCGATCGCTGAAACCCCAATGCTGCCAGTCAGGTTC
714 ATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTC
* * ** * * *
14644357 TTCGACGATGCTCCGGTGATGGTGCACGGACGAAGAAAAATGCGGCACCAGCACATACCCGAGCC
777 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * *
14644422 CAGCATGTGCTGCTGCAACCCTCGGTCTGATCTGATCTAAGATTGGGAGTGAACTCCGTATG
842 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14644484 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14644549 CAGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * ** * *
14644614 TTTTGCCATAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC--AGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * ** * ** * *
14644677 CCGATC-AAACAAGCGGGCAAGCAGGCTAGCAGGCACTACATCGGCTAGAGAGACGAGATGCGCA
196 CCGA-CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14644741 AGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGAC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
14644806 ATTTTTATGGCTTGTAAATTGATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
14644871 CGACTCATTTTCTATTTTGCTTGATTTTTAAAACGTTTTGA-GGTTCGAGATTTTTTAAAATTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
14644935 TTTGGGAA-TATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTATGTTGGCATGCACA
454 TTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
14644999 AAAAAATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14645064 TTCAGACACTTTAATGGCTACAGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
14645129 GAGTTCTCGAGGTTTGATGAGGG-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-CTGC
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GC
* * *
14645192 ACATCATGTGCGCACACCCCCCGACCCCCCCGATCG-TAGGAAACCCAATGCCGCCGGTCAGGTT
712 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTT
* * * * * *
14645256 CTCCGACGATGCTTCGACGATGCTACCCCGACGAAGAGAAATGCGGCACCAGCACATGCTCGAGC
776 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
14645321 CCAGCATGTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * **
14645383 CTTAGACTGGGAACAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14645448 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAAC-AGTCGGGTCCCCCTCTGCTTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * * *
14645512 CTACTACCGCAACGCTCGGTAGGGTCGAATCCTAGACTGGGAAAGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14645577 ACCGATGAAACAAGTGGGCGGGC
195 ACCGACGAAACGAGCGGGCGGGC
14645600 ACCACACCGA
Statistics
Matches: 7215, Mismatches: 1001, Indels: 176
0.86 0.12 0.02
Matches are distributed among these distances:
886 2 0.00
887 762 0.11
889 8 0.00
890 53 0.01
891 466 0.06
892 9 0.00
893 240 0.03
895 1 0.00
896 661 0.09
897 13 0.00
898 28 0.00
899 710 0.10
900 391 0.05
901 540 0.07
902 464 0.06
903 1673 0.23
904 689 0.10
905 504 0.07
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14643595 original size:26 final size:26
Alignment explanation
Indices: 14643565--14643617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14643555 CCGGTCCGTT
*
14643565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14643591 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14643617 C
1 C
14643618 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14645386 original size:26 final size:26
Alignment explanation
Indices: 14645357--14645409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14645347 CCGGTCCGAT
**
14645357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
14645383 CTTAGACTGGGAACAAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
14645409 C
1 C
14645410 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:14646620 original size:26 final size:26
Alignment explanation
Indices: 14646584--14646636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14646574 CTGATCTGAT
*
14646584 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14646610 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14646636 C
1 C
14646637 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14647673 original size:911 final size:888
Alignment explanation
Indices: 14645853--14648411 Score: 3385
Period size: 911 Copynumber: 2.8 Consensus size: 888
14645843 CGGTCCGATA
* * * *
14645853 CGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCG-ACTGACGAAAC-AACCAGGCGGGCG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CGAACCGACGAAACGAGCC-GACGGGCG
* * * *
14645916 GGCGGGCGAGCACTACACCAGCCAGAGAGAC-AGGATGCGCAAGTCGTGAATCGATAGGGTGGTA
64 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGA-GATGCGCAAGTCGTGGATCGATAGGGTGGTA
*
14645980 GGTGGGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATGCAATTTTTATGGCTTGTAAATTCA
128 GGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
14646044 TAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTAGTTTTCAT
192 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
14646109 AATTTTTGAAACTTTTTGGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGCGTTTTGGCCCCAAA
257 GATTTTTGAAACTTTTTCGGTTCAGGATTTTTTAAAATTTTTTC-GAAAGAGTTTTGG-CCCAAA
** * * *
14646174 CTTGGTAGATGTGATCCTTGTATTGTTGTTGGCACGCATAAAAAAAATCAGCTAAAAACTCGAAG
320 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATCAGCTAAAAACTCGAAG
* * * *
14646239 CGTACAAGATTTTATGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGC
384 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14646304 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTTGAGGTTTGATGAGGGAC
449 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAC
14646369 AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
514 AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * *
14646434 ACCCCGATCACCGGAACCCCAATACCATCGGTCAGGTTCC-CCGGCGATGCTCCGACGATGCTCC
579 -CCCCGATCGCCGGAACCCCAATGCCATCGGTCAGG-TCCTCC-G-G-TGAT---AC--T--T-C
*
14646498 GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA-CCCAGCATGTGCTGCC
631 GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * * *
14646562 GCAACCCTCGGTCTGATCTGATCTTAGAGTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
696 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAA
* * * * * *
14646627 CTCTGTATGCCTAAGTCAACCAACGAAATAAGCGTGCGGGTACTCAGTCGACCAGAGGGGTGGGA
761 CTCCGTATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCACTCAGCCGACCAGAGGGGCGGGA
* **
14646692 TGCGCAAGCCGGGGATCAGTCAGGTCCCCCTCTGCGTGTTGGCGATCCTGCTGTCGCAACCCT
826 TGCGCAAGCCGGGGATCAGTCAGGTCCCCCTCTGCGTGCTGGCGATCCTGCTACCGCAACCCT
* *
14646755 CGATCTTATCTGATCCTAGAATGGGAATGAACTCCGTATGCCTAAGGGAACCGATGAAACGAGCC
1 CGATCTTA---GA--C-----TGGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAACGAGCC
* * *
14646820 GACGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGAGATGCACAAGCCGTGGATCGATAG
56 GACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAG
* *
14646885 GGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTGCTTGCCAATGCCATTTTAAT-GCTTGTA
121 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTA
* *
14646949 AATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
186 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * ** * *
14647014 TTTCACGATCTTCAAAACTTTTTACGGTTCAGGATTTGTTAAAATTTTTTCGAATGGAGTTTTGG
251 TTTCATGATTTTTGAAACTTTTT-CGGTTCAGGATTTTTTAAAATTTTTTCGAA-AGAGTTTTGG
* *
14647079 AACCAAACGTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAAC
314 -CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAAC
**
14647144 TCGAAGTGTATGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
378 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
14647209 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
443 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
* * * ** *
14647274 AGGGATAAGAGGCAAATATAAGGGCCAAGTAATAGCA-CAAGTCGCACATCATGTGCGCACACCC
508 AGGGACAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACACCC
* **
14647338 CCTGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTCCTCCGGTGATACTTCGGCGA
572 CCCGGCCCCC-CGATCGCCGGAACCCCAATGCCATCGGTCAGGTCCTCCGGTGATACTTCGGCGA
* *
14647403 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGCAAC
636 TGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* *
14647468 CCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATCCTTCGACTGGGAATGAACTCCG
701 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCG
* * * *
14647533 TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
766 TATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGC
* ** *
14647598 AAGCCGGGGATCGGTC-GGATCCCCCTCTGCGTGCTGTTGATCTTGCTACCGCAACTCTCGATCC
831 AAGCCGGGGATCAGTCAGG-TCCCCCTCTGCGTGCTGGCGATCCTGCTACCGCAA----C---CC
14647662 AGT
888 --T
* *
14647665 CTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG-CGAGCGGGCG
1 C-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAACGAGCCGA-CGGGCG
** * * *
14647729 GGCGGGTAGGCACTACGCCGGCCAGAGAGACGGGACGCGCAAGTCGTGGATCCATAGGGTGGTAG
64 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAG
* * *
14647794 GTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGTTTGTAAATTCATA
129 GTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14647859 CAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGA
194 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** *
14647924 TTTTTGAAACTTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGAAACGAGTTTTGGCCCAAAC
259 TTTTTGAAAC-TTTTT-CGGTTCAGGATTTTTTAAAATTTTTTCGAAA-GAGTTTTGGCCCAAAC
*
14647989 TTGGTAGACATGACCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
321 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAAGT
14648054 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTGGC
385 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGC
* * ** *
14648118 ACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATAAGGGAC
449 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAC
* * **
14648183 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCGGTA
514 AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
** * * * * ** * * **
14648248 CCCCGATCGCCAAAACGCCAATGCCATCGATCAGGTTCTTCGACGATGCTCCAACGATGGTGCCC
579 CCCCGATCGCCGGAACCCCAATGCCATCGGTCAGGTCCTCCGGTGATACTTCGGCGATGGTGCCC
** * * * * * * *
14648313 CGGTGAAGAAAAATATGACACCAGCACATTCTCGAGCTCAACATGTGCTATCGCAACCCTCGGTC
644 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* *
14648378 CGGTCCGATGTTAGACTGGGAATGAACTCCGTAT
709 TGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
14648412 GCCTAAGCCA
Statistics
Matches: 1454, Mismatches: 165, Indels: 76
0.86 0.10 0.04
Matches are distributed among these distances:
900 53 0.04
901 324 0.22
902 274 0.19
903 232 0.16
904 2 0.00
905 5 0.00
906 1 0.00
907 1 0.00
908 7 0.00
909 1 0.00
910 11 0.01
911 328 0.23
912 210 0.14
913 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (888 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAACGAGCCGACGGGCGGG
CGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTTGAAACTTTTTCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGAGTTTTGGCCCAAACTTGGT
AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGACAAGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
CGCCGGAACCCCAATGCCATCGGTCAGGTCCTCCGGTGATACTTCGGCGATGGTGCCCCGACGAA
GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CAACGAAACAAGCATGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGT
CAGGTCCCCCTCTGCGTGCTGGCGATCCTGCTACCGCAACCCT
Found at i:14649054 original size:717 final size:716
Alignment explanation
Indices: 14647641--14649128 Score: 2196
Period size: 717 Copynumber: 2.1 Consensus size: 716
14647631 CTGTTGATCT
* * * *
14647641 TGCTACCGCAACTCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14647706 CCGACGAAACGAGCGAGCGGGCGGGCGGGTAGGCACTACGCCGGCCAGAGAGACGGGACGCGCAA
66 CCGACGAAACGAGCGAGCAGGCGGGCAGCTAGGCACTACGCCGGCCAGAGAGACGGGACGCGCAA
* *
14647771 GTCGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
131 GCCGTGAATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
* *
14647836 TTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGGC
196 TTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTTCATGGCAAGAC
* * * *
14647901 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTCTACGGTTCGGGATTTTTTAAAATTTTT
*
14647966 TTGAAACGAGTTTTGGCCCAAACTTGGTAGACATGACCCTTGTATTTTTGTTGGCATGCACAAAA
326 TGGAAACGAGTTTTGGCCCAAACTTGGTAGACATGACCCTTGTATTTTTGTTGGCATGCACAAAA
*
14648031 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCT
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCCATTCT
* *
14648096 AGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAG
456 AGACACTTTAATGACTACTAGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAG
* * *
14648161 TTCTCAAGGTTTGATAAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
521 TTCTAAAGGTCTGATAAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACG-ACAT
* * * *
14648226 TATGTGCGCACACCCCCCGGTACCCCGATCGCCAAAACGCCAATGCCATCGATCAGGTTCTTCGA
585 CATGTGCGCACACCCCCCGGCACCCCGATCGCCAAAACCCCAATGCCATCGATCAGGTTCTCCGA
* ** * * * *
14648291 CGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATATGACACCAGCACATTCTCGAGCTCAACA
650 CGATGCTCCAACGATGCTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACA
14648356 TG
715 TG
* * *
14648358 TGCTATCGCAACCCTCGGTCCGGTCCGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
14648423 CCGACGAAACGAGC-AGGCAGGCGGGCAAGCT-GGCACTACGCCGGCCAGAGAGACGGGATGCGC
66 CCGACGAAACGAGCGA-GCAGGCGGGC-AGCTAGGCACTACGCCGGCCAGAGAGACGGGACGCGC
* *
14648486 AAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTATGCCAATGC
129 AAGCCGTGAATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGC
*
14648551 CATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
194 CATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTTCATGGCAAG
14648616 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTCTACGGTTCGGGATTTTTTAAAATTT
259 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTCTACGGTTCGGGATTTTTTAAAATTT
* * * *
14648680 TTTGGGAA-GAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
324 TTTGGAAACG-AGTTTTGG-CCCAAACTTGGTAGACATGACCCTTGTATTTTTGTTGGCATGCAC
*
14648744 AAAAACATTCAGCTAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCCA
387 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
14648809 TT-TCAGACACTTTACTGACTACTAGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGT
452 TTCT-AGACACTTTAATGACTACTAGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
14648873 GTGAGTTCTAAAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCAACG
516 GTCAGTTCTAAAGGTCTGATAAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACG
* * * ** * *
14648938 -CATCATGTGCGCACACTCCCCTGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
581 ACATCATGTGCGCACAC-CCCCCGGCACCCC-GATCGCCAAAACCCCAATGCCATCGATCAGGTT
* ** * * * *
14649002 CTCCGATGATGCTCCGGCGATGCTGCCTCGACGGAGAAAAATGCGGCACCAGCACATGCCCGAGC
644 CTCCGACGATGCTCCAACGATGCTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGC
*
14649067 CCAGCATG
709 CCAACATG
* * * * * * *
14649075 TGCTGCTGTAACCCTCGGTCCAATTCGATCTTAGATTGGGAATGAACTCTGTAT
1 TGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
14649129 CCTTAGACTG
Statistics
Matches: 687, Mismatches: 77, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
715 16 0.02
716 52 0.08
717 617 0.90
718 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (716 bp):
TGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCAGGCGGGCAGCTAGGCACTACGCCGGCCAGAGAGACGGGACGCGCAA
GCCGTGAATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
TTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTCTACGGTTCGGGATTTTTTAAAATTTTT
TGGAAACGAGTTTTGGCCCAAACTTGGTAGACATGACCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCCATTCT
AGACACTTTAATGACTACTAGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAG
TTCTAAAGGTCTGATAAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGACATC
ATGTGCGCACACCCCCCGGCACCCCGATCGCCAAAACCCCAATGCCATCGATCAGGTTCTCCGAC
GATGCTCCAACGATGCTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACAT
G
Found at i:14649140 original size:26 final size:26
Alignment explanation
Indices: 14649104--14649154 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14649094 CCAATTCGAT
* *
14649104 CTTAGATTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
14649130 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14649155 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:14650732 original size:26 final size:26
Alignment explanation
Indices: 14650703--14650755 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14650693 CCGGTCAGAT
14650703 CTTAGACTA-GGAATGAACTCCGTATG
1 CTTAGAC-AGGGAATGAACTCCGTATG
14650729 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14650755 C
1 C
14650756 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14652420 original size:26 final size:26
Alignment explanation
Indices: 14652380--14652432 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14652370 ACGGACCGAT
14652380 CTTAGACAGGAAATGAAC-TCTGTATG
1 CTTAGACAGGAAATGAACTTC-GTATG
* *
14652406 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAGGAAATGAACTTCGTATG
14652432 C
1 C
14652433 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTTCGTATG
Found at i:14653311 original size:26 final size:26
Alignment explanation
Indices: 14653282--14653334 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14653272 CTGGTCTGAT
*
14653282 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
14653308 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14653334 C
1 C
14653335 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14653906 original size:892 final size:888
Alignment explanation
Indices: 14651460--14655064 Score: 3955
Period size: 892 Copynumber: 4.1 Consensus size: 888
14651450 GCACACTGCC
* * * * * * *
14651460 CCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACCCC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCT
* * ** * * ** *
14651525 GTATGCTTAGATTGGGAATGAACTTCACACGCCTAAGTCAAGCCACGAAACAAGTGTGCGGGCGC
66 GTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC
* * * * **
14651590 TCAGCCAGCCA-ATGGGGTGGGATGCGTAAGCC-GAGGATCAGTAAGGTCCCCCTCTGCGTGCTG
131 TCAGTCGGCCAGA-GGGGTGGGATGCGCAAGCCAG-GGATCGGTCGGGTCCCCCTCTGCGTGCTG
* ** ** * *** *
14651653 TCGATCCTGC-GGCTAAAGCCCTC-GACCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGC
194 CCGATCCTGCTACCGCAA-CCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGC
** * * * * * *
14651716 CTATTCCAA-TCGATGAAACGAGCGGATGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGACG
257 CTAAGCCAACT-GACGAAATGAGC----GGGCGGGCAGG-GGGCACTA-ACCGGCCAGAGAGAAG
* * * *
14651780 AGATGTGCAAGCCATCGATCAATAGGGTGGTAGGT-GG----G------TT-TA----G--G-C-
315 GGA--TGCAAGCCGTGGATCGATAGGG-GGTA-GTCGGTTTAGCACATCTTCTATTTTGATGCCA
* * *
14651825 A---CATCTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTC-CTGTGAAGTTTCATT
376 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATG
* * * * * ** *
14651886 GCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTCTTACGGTTTGGGATTTCCTAAT
440 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * * *
14651951 ATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATG
505 ATTTTTTTGAAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
14652016 TACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCC
570 CACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
14652081 CCAATTCAAATAGTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
635 CCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
14652146 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
700 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * ** * *
14652211 CGCACATCATATGTGCACACCCCCCGGCTCCCCCGATCGTTGGAACCCCAATGCCGTCGATCAAG
765 CGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * *
14652276 TTCTCCGATGATGCTCCGGTGATGGTTCCCCGACGAAGAAAAATGCGGCACCAGCACATG
829 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
* * *
14652336 CCCGAGCCCAGCATTTGCTGCCACAACCCTCGGTAC-GGACCGATCTTAGACAGGAAATGAACTC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT-CTGGTCCGATCTTAGACTGGAAATGAACTC
* *
14652400 TGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
65 TGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
* * * * * *
14652465 TTCAGTCGGCCAGAAGGGTGGGATGCGCAAGCCAAGGATCAGTCGAGTCCCCCTTTGCGTGCTGC
130 CTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * * * ** *
14652530 TGATCTTGCTGCTGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTA
195 CGATCCTGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTA
* * * * * *
14652595 AGCCATA-TGAGGAAACGAGCGGGCAGGTGGGCGGGTGGGCACTACGCCGGCTAGAGAGACGGGA
260 AGCCA-ACTGACGAAATGAGCGGGC----GGGCAGG-GGGCACTA-ACCGGCCAGAGAGAAGGGA
* *
14652659 TGTGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGTGTGCC
318 --TGCAAGCCGTGGATCGATAGGG-GGTA-GTCGGTTTA-GCACATCTTC-TA-TTTTG-ATGCC
* *
14652724 AATGCCATTTTTATGGTTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
375 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
14652789 GCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAATTTTTTGCGGTTCAGGATTTTTTAAA
440 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * * * **
14652854 ATTTTTTTGGAAGGAGTTTTAGCCCCAAACCTGGTAGACATGATTGTTGTATTTTTGTTGGCATG
505 ATTTTTTTGAAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * **
14652919 CACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTAACC
570 CACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
14652984 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
635 CCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * ** * * * *
14653049 GTATGAGTTCTCGAGCTTCGATGAGTTATAGGGGCCCAATATAAGGGCTAGGTACCAGTACCCAT
700 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * ** * *
14653114 CGCACATTATGTGTGCACACCCCCCGGGCCCCCCGATCGTTGAAACCCCAATGCCATCGGTCAGG
765 CGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
14653179 TTCTCCGGCGATGCTCCGACGATGGTGTCTCGA-GAAGAAAAGTGTGGCACCAACACATG
829 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
* ** * *
14653238 CCCGAGCCCAGCATGTACAACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGAAATGAACTCT
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCT
* * *
14653303 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCAGGCGC
66 GTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC
** *
14653368 TCAACCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCC
131 TCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * * * * *
14653433 AATCCGGCTACCGCAACCCTCAGTCTGGTCCAATTTTAGATTAGGAATGAAATCCATATGCCTAG
196 GATCCTGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAA
* *
14653498 GCCAACCGACGAAATGAGCGGGCGGGC-GGAGGGCACTATACCGGCCAGAGAGAAAGGATGCATA
261 GCCAACTGACGAAATGAGCGGGCGGGCAGG-GGGCACTA-ACCGGCCAGAGAGAAGGGATGCA-A
*
14653562 GGCCGTGGATCGATAGGGGGTAGTGGGTTTAGCACATCTTCTATTTCTGCATGCCAATGCCA-TT
323 -GCCGTGGATCGATAGGGGGTAGTCGGTTTAGCACATCTTCTATTT-TG-ATGCCAATGCCATTT
*
14653626 TTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
385 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
**
14653691 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTTGA
450 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGA
* *
14653756 AAGGTGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA
515 AAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
14653821 ATCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAAA
580 TTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
*
14653886 CTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
645 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* **
14653950 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCAAACATCAT
710 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
14654015 GTGCGCACACCCCCCGGCCCCCACGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
775 GTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * *
14654080 ATGCTCCGGTGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATG
839 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
* * * * * * *
14654130 CTCGAGCCCAGCATGTGCTGCCATAACCCTTGGTCTGCTCTGATCTTAGAGTGGAAATGAACTCC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCT
* *
14654195 GTATGCTTCA-ACTGGAAATGAACTATGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
66 GTATGCTT-AGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
* * * ** *
14654259 GTCAGTCGGCTAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
130 CTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * ** * *
14654324 CGATCCTACTACCGTAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
195 CGATCCTGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTA
* * * *
14654389 AGCCAACTGACG-AATACAGC-GGCAGGCAGGCGGCACTAAGCCTG-CA-AG-GAACGGGATAGC
260 AGCCAACTGACGAAAT-GAGCGGGCGGGCAGGGGGCACTAA-CCGGCCAGAGAGAA-GGGAT-GC
* * * * * *
14654449 AAG-CTTGGATCGA-A-GTGGTCAAGACGGTTTGGCACCA-CTTGATATTTTGA-G-TACATGCC
321 AAGCCGTGGATCGATAGGGGGT--AGTCGGTTTAGCA-CATCTT-CTATTTTGATGCCA-ATGCC
* * * *
14654508 ATTTTTTTGGC-TGCCAAATTAATACAATGGT-CCTTACAGCCTTCA----AAGTTTCGTGGCAA
381 ATTTTTATGGCTTG-TAAATTCATACAATGGTCCCTTA-AGCCTTCACGTGAAGTTTCATGGCAA
*
14654567 -ACGACTCG--TT-TA--TTTCA--ATTTTCAAAAC-TTTTACGGTTCGGGA-TTTTTAAAA-TT
444 GACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * * *
14654621 TTTGGAGA-GAATTTT-GACCAAAACTTGGTAGCTTAAGTGATCCTTGTATTTTTTTTGGCATGC
509 TTTTGAAAGGAGTTTTGGCCCAAAACTTGGTAG---ACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
14654684 A-AAAAAAATTCAGCCAAAAACTTGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCT
571 ACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
14654748 C-GTTCTAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
636 CATTTC-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
14654812 GTGTGAGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTAT
700 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
14654877 CGCACATCATGTGCGCACACCCCCCGGCCCCCCCAACCACCGCAACCCCAATGCCGTCGGTCAGG
765 CGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * *
14654942 TTCTCCGACAATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATG
829 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
* ** * * * * *
14655002 TCCGAG-CCAGCATGTGCTGCCGTAACCCTAGGTCCGATCCGATCTTCGACTGGGAATGAACTC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTC
14655065 CATATGCCAA
Statistics
Matches: 2344, Mismatches: 319, Indels: 137
0.84 0.11 0.05
Matches are distributed among these distances:
869 15 0.01
870 8 0.00
871 166 0.07
872 214 0.09
873 18 0.01
874 10 0.00
876 287 0.12
877 10 0.00
878 2 0.00
879 2 0.00
881 8 0.00
882 14 0.01
884 1 0.00
885 18 0.01
886 32 0.01
887 24 0.01
888 13 0.01
889 7 0.00
890 15 0.01
891 153 0.07
892 548 0.23
893 16 0.01
894 10 0.00
895 13 0.01
896 5 0.00
897 42 0.02
898 5 0.00
899 1 0.00
900 1 0.00
901 2 0.00
902 263 0.11
903 417 0.18
904 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCT
GTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC
TCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
GATCCTGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAA
GCCAACTGACGAAATGAGCGGGCGGGCAGGGGGCACTAACCGGCCAGAGAGAAGGGATGCAAGCC
GTGGATCGATAGGGGGTAGTCGGTTTAGCACATCTTCTATTTTGATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAG
TTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
Found at i:14655645 original size:17 final size:17
Alignment explanation
Indices: 14655625--14655657 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14655615 CCCCCGATCG
14655625 TCGGAACCCCAATGCCA
1 TCGGAACCCCAATGCCA
*
14655642 TCGGTACCCCAATGCC
1 TCGGAACCCCAATGCC
14655658 GCCGATCAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.42, G:0.18, T:0.15
Consensus pattern (17 bp):
TCGGAACCCCAATGCCA
Found at i:14657593 original size:26 final size:26
Alignment explanation
Indices: 14657550--14657602 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14657540 CCGATCCGAT
* *
14657550 CTTAGAGTGGAAAAGAACTCTGTATG
1 CTTAGACTGGAAAAGAACTATGTATG
* *
14657576 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGAAAAGAACTATGTATG
14657602 C
1 C
14657603 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAAAGAACTATGTATG
Found at i:14658502 original size:26 final size:26
Alignment explanation
Indices: 14658451--14658503 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14658441 CTGGTCTGAT
* *
14658451 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14658477 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14658503 C
1 C
14658504 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14659077 original size:893 final size:892
Alignment explanation
Indices: 14656678--14659372 Score: 3587
Period size: 893 Copynumber: 3.0 Consensus size: 892
14656668 CCGATCCGAT
* * *
14656678 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGATGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGTGCTCAGT
* * * * * * *
14656743 CGGCCAGAGGGGCAGGACGTGCAAGTCAAGGATCAGTCGGGTTCCCTCTACGTGCTGTCGATCCT
66 CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCTCTGCGTGCTGTCGATCCT
* **
14656808 GCTGCCACAACCCT-TAGTCCGGTCTGATCTTAGGGTGGGAATGAACTCCGTATGCCTAAGCCAA
131 GCTGCCACAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14656872 CCGATGAAACGAGCGGTCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
195 CCGACGAAACGA---G-CGGGCGGGCGGGCAC-ACACCGGTCAGAGAGACGGGATGCGCAAGCCG
*
14656937 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
255 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
14657002 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT
320 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
14657067 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGA
385 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGA
* * * *
14657132 AGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGGTGGTATGCACAAAAAAAT
450 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * *
14657197 TCAGCCAAAAATTCGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCTCATTTTAGAC
515 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
14657262 ACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT
580 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
14657326 TGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATG
645 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
14657391 TGCGCACACCCGCCCGACCCCCACGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTCG
710 TGCGCACACCC-CCCGGCCCCCA-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
** *
14657456 ATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGCTG-CACCAGCACATGCCCGAGCCCAGCAT
773 ATGCTCCGGCGATGGTGCCCCGATAAAGAAAAAT-ATGACACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
14657520 GTGC-GTCCGTAACCCTCTGTCCGATCCGATCTTAGAGTGGAAAAGAACTCTGTATG
837 GTGCTG-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
** * * * * *
14657576 CTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCACGGAACGAGCATACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGTGCTCAGT
* * * * * *
14657641 CGGCCAGAGGGGCGAGATGTGCAAGTCGGGGACCGGTCGGGTCCCCCTCTGCATGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGT-CCCCTCTGCGTGCTGTCGATCC
* * * * *
14657706 TGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCTTATGGCTAAGCCAA
130 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
14657771 CCGACGAAACGAGCAGGCGGGCGGGCGGGCGAGCACTATGCCGG-CTAGAGAGACGGGATGCACA
195 CCGACGAAAC--G-A-GCGGGCGGGCGGGC-A-CAC-A--CCGGTC-AGAGAGACGGGATGCGCA
* * *
14657835 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTTTGCATGCCAATGCC
250 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
** * *
14657900 ATTTTTATCACATGTAAGTTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
315 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14657964 CGACTCGTTTTCTATTTTCCATGATTTTTAAAACTTTTTGCGGTT-TGAGATTTTGTAAAATTTT
380 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTT
* * * * * *
14658028 TTTGGAAGGATTTTAGGCCCCAAACATGGTAGATGTGATCCTGGTGTTTTTGTTGGCATGCA-AC
444 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-
14658092 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
508 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
14658157 TTCAGATAGTTTAATGGCTATTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
573 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** *
14658222 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGTGGGCCAAGTACCAGCACCCATTGCA
638 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
14658287 CATCATCTGCGCACACCCCCCGGCCCCCAGATCGACGGAACCCCAATGTCGCCGGTCAAGTTCTC
703 CATCATGTGCGCACACCCCCCGGCCCCCAGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
14658352 TGGCGATGCTCCGACGATGGTGCCCC-AGTGAAGAAAAATATGACACCAGCACAT-CCCAAAGCC
768 CGACGATGCTCCGGCGATGGTGCCCCGA-TAAAGAAAAATATGACACCAGCACATGCCC-GAGCC
* * * *
14658415 CAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATATG
831 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
* * * * *
14658477 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAGCACACAAAACGAACGTGCGGGTGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGTGCTCAGT
* * * * * * *
14658541 CTGGACAGAAGGGCGGGATGCGTAAGCCGAGGATCGGTCAGGTCCCTCTCTCCGTGCTGCCGATC
66 C-GGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCC-CTCTGCGTGCTGTCGATC
* * * * * *
14658606 CTGCTGGCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGCATTCTGTATGCCTAAGCCG
129 CTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * **
14658671 ACCGATGAAATGAGCGGGCGGGCGGGCACAACATCGGTTAGAGAGGCGGGATGCGCAAGCCGTAA
194 ACCGACGAAACGAGCGGGCGGGCGGGCAC-ACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
14658736 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGAGCCAATTCCATTTTTAC
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* *
14658801 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
14658866 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTTCGGAAGG
388 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
*
14658931 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-AATTTTGTTGGCATGCACAAAAAAATTCA
453 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
14658995 CCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTAAGACACT
518 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
14659060 TTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTGAAGGGGGTGTGACTTCTTGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
14659125 GGTTTAATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGTACATCATGCGC
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
*
14659190 GCACACCCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
713 GCACA-CCCCCC-GGCCCCCAGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * * * *
14659255 CTTCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTATGTGC
776 CTCCGGCGATGGTGCCCCGATAAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGC
* ** *
14659320 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACAAGGAATGAACTCCGTATG
841 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
14659372 C
1 C
14659373 CTAAGCCATC
Statistics
Matches: 1570, Mismatches: 198, Indels: 61
0.86 0.11 0.03
Matches are distributed among these distances:
893 307 0.20
894 132 0.08
895 148 0.09
896 7 0.00
897 14 0.01
898 93 0.06
899 97 0.06
900 14 0.01
901 297 0.19
902 269 0.17
903 192 0.12
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGTGCTCAGT
CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCTCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCACACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCAGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
GCGATGGTGCCCCGATAAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
Found at i:14660457 original size:754 final size:740
Alignment explanation
Indices: 14658710--14660835 Score: 3024
Period size: 754 Copynumber: 2.9 Consensus size: 740
14658700 AACATCGGTT
* **
14658710 AGAGAGGCGGGATGCGCAAGCCGTAAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
14658775 TTTCTACGA-GCCAATTCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
14658839 GTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
130 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * *
14658904 AGGATTTTTTAAAAATTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-AA
195 AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
14658968 TTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTC
260 TTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
* * *
14659033 GAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAAT
324 GAAAAAAGTGTCCCCATTTCAGATACTTTAATTGCTACTGGCAGCAAACCTGTAATATCTCAAAT
* ** * ** *
14659098 GCTCTTGAAGGGGGTGTGACTTCTTGAGGTTTAATGAGGGATAGGGGGCCAACATAAGGGCCAAG
389 GCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
14659163 TACCAGCACCCATCGTACATCATGCGCGCACACCCCCCCGGGCCCCCCGATCGTCGGAACCCCAA
454 TACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-AGCCCCCCGATCGTCGGAACCCCAA
* *
14659228 TGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATACGGCAC
517 TGCCGCCGGTCAGGTTCTCCG-CG-TGC-TCGATGATGGTGCCCCGATGAAGAAAAATGCGGCAC
*
14659293 CAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAA-CC-C--T-CGG---TC-----C---G-AT
579 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCATCTTAGACTGGGAAT
** * * *
14659341 ---C-CG-AT-CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCATCCGACGAAACGAGCAGGT
644 GAACTCGTATGCTTAGACAAGGAATGAACTCCGTACACCTAAGCCAACCGACGAAACAAGCAGGC
* *
14659400 GGGCGGGCGGACGGGCGGTCACTACGCCAGCT
709 GGGCGGGCGGACGGGCGGGCACTACGCCAGCC
* * *
14659432 AGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCAAA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
14659497 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACA
66 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
14659562 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTCG
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
* *
14659627 GGATTTTTTAAAATTATTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
196 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
14659692 TTTGTTGGCATGCACAAAAAAAACAAGCTAAGAACTCAAAGTGTACAAGATTTTGTGACCATTTG
261 TTTGTTGGCATGCACAAAAAAATC-AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
*
14659757 AAAAAAGTGTCCCCATTTCAGATACTTTAATTGCTACCGGCAGCAAACCTGTAATATCTCAAATG
325 AAAAAAGTGTCCCCATTTCAGATACTTTAATTGCTACTGGCAGCAAACCTGTAATATCTCAAATG
*
14659822 CTTTTTAAGGGGGTGTGGGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGT
390 CTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
14659887 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCTCCCCTCGATCGCCGAAACACCAA
455 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG-C-CCCC-CGATCGTCGGAACCCCAA
* * *
14659952 TGCCGCCGGTCAGGTTCTCCGGCGGTGCTCCGATGATGGTGCCCCGACGAAGAGAAATGCGACAC
517 TGCCGCCGGTCAGGTTCTCC-GC-GTGCT-CGATGATGGTGCCCCGATGAAGAAAAATGCGGCAC
*
14660017 CAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGA
579 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-C-ATCTTAGACTGGGA
* *
14660082 ATGAACTCTGTATGCTTAGACTAGGAATGAACTTCGTACACCTAAGCCAACCGACGAAACAAGCG
642 ATGAACTC-GTATGCTTAGACAAGGAATGAACTCCGTACACCTAAGCCAACCGACGAAACAAGC-
* * * * *
14660147 GACGGGCGGGCGGGTGGTCGGGCGGGCACTATGTCGGCC
705 -A--GGCGGGCGGGCGGACGGGCGGGCACTACGCCAGCC
* * *
14660186 AGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTTATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
14660251 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* **
14660316 TGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCA
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
* * *
14660381 GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTATACGTGATCCTTGTATT
196 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
14660446 TTTGCTGGCATGCATAAAACAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
261 TTTGTTGGCATGCACAAAA-AAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
14660511 AAAAAAGTGTCCCCATTTCAGATACTTTAATTGCTACTGGCAGCAAACCTGTAATATCTCAAATG
325 AAAAAAGTGTCCCCATTTCAGATACTTTAATTGCTACTGGCAGCAAACCTGTAATATCTCAAATG
* *
14660576 CTCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGTTGAGGGATAGGGGCCCAATATAAGGGCCAAGT
390 CTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
14660641 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTAGCCCCCCGATCGTCGGAACCCCAATGC
455 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGC
* * * *
14660705 CGCCGATCAGG-T-T---C-T--TCGGTGATGGTGCCCCGATGAAGAAAAAAGTGGCACCAGCAC
520 CGCCGGTCAGGTTCTCCGCGTGCTCGATGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCAC
* *
14660762 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC
585 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC--ATCTTAGACTGGGAATGAAC
14660827 TACGTATGC
648 T-CGTATGC
14660836 CTAAGCGAAC
Statistics
Matches: 1255, Mismatches: 107, Indels: 67
0.88 0.07 0.05
Matches are distributed among these distances:
721 2 0.00
722 243 0.19
723 212 0.17
724 102 0.08
725 4 0.00
726 1 0.00
728 1 0.00
729 3 0.00
734 2 0.00
738 1 0.00
739 102 0.08
740 2 0.00
742 2 0.00
743 2 0.00
744 1 0.00
746 1 0.00
747 1 0.00
748 2 0.00
749 3 0.00
750 72 0.06
751 4 0.00
752 2 0.00
753 6 0.00
754 480 0.38
755 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (740 bp):
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGATACTTTAATTGCTACTGGCAGCAAACCTGTAATATCTCAAATGC
TCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCC
GCCGGTCAGGTTCTCCGCGTGCTCGATGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCATCTTAGACTGGGAATGAACTCG
TATGCTTAGACAAGGAATGAACTCCGTACACCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGG
CGGACGGGCGGGCACTACGCCAGCC
Found at i:14662490 original size:26 final size:26
Alignment explanation
Indices: 14662461--14662513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14662451 CCGGTCTGAT
14662461 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14662487 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14662513 C
1 C
14662514 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14663434 original size:26 final size:26
Alignment explanation
Indices: 14663350--14663427 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
14663340 CTTTGTCCAG
14663350 TCTG-ATG-TTAGACTGGGAATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
*
14663374 TTTGTATGCTTAGACTGGGAATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
14663400 TCTGTATGCTTAGACTGGGAATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
14663426 TC
1 TC
14663428 CATATGCCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
24 3 0.06
25 3 0.06
26 44 0.88
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGGAATGAAC
Found at i:14664317 original size:26 final size:26
Alignment explanation
Indices: 14664279--14664331 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14664269 CCGGTCTGGT
14664279 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14664305 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14664331 C
1 C
14664332 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14668749 original size:26 final size:26
Alignment explanation
Indices: 14668720--14668772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14668710 CCAATCCGGT
*
14668720 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14668746 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14668772 C
1 C
14668773 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14669124 original size:900 final size:900
Alignment explanation
Indices: 14660780--14671470 Score: 13301
Period size: 900 Copynumber: 11.9 Consensus size: 900
14660770 GCCCAGCATG
* * * * *
14660780 TGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCGAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14660845 CCGACGAAATGACCGAACGGGTGGGCGGGCGTGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGAGC-GG-GCG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
14660910 GTCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
** * *
14660975 AATTTGTGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14661040 GACTCGTTTTCTATTTTTCACGATTTTTAAAAATTTTTACGGTTC-AGGATTTTTTAAAATTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* * *
14661104 TTGGTAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
322 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14661169 AAAAATCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14661234 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
14661299 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAATACCAGCACCCATTGCACA
517 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
14661364 TCATGTGCGCACA-CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCTGTCGGTCAGCACATG
582 TCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAA---------T--GC-C--G
* * * **
14661428 CCCCAGCGATTGTGCCCCGGTGATTGTGCCGCTACGATTGTGCTCCGACTA-GTGTGCCCCGGTG
632 ---C--CG---GT----CAG-G-TTCT-CCG--ACGA---TGCTCCGACGATG-GTGCCCCGACG
* * *
14661492 AAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGATC
676 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
** ** * * *
14661557 CGATCTTAGAC-AAGAATGAACTCCGTATAATTACACTGGCAATGAACTCCGCATGCCTAAGTCA
741 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
14661621 ACCCACGAAATGTGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCG
806 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** *
14661686 G-CTAGTCCCCCTCTACGTGCTGCCGATCC
871 GCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * * *
14661715 TGCTACCACAACTCTC-GATTTGGTCCGATCTTAGACTGGCAATGAACTCCGTCTGCCTAAGCCA
1 TGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
14661779 ACCGACGAAACGAACGGGCGGGCGGGCGGACGGGCACTACATCGGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCGAGCGGGC-GG-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
14661844 AGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
14661909 ATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * *
14661974 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
257 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
** ** * *
14662039 TTTGAAGGAGTTTTAACCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAA
322 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAA
* *
14662104 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAATGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
14662169 TCAAACACATTAATGGCCACTCGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
14662233 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
14662297 ATCATGTGCACACA-CCCCCCGACCCCCTCGTTCATCGAAACCCCAATGCCACCGATCAGGTTCT
581 ATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
14662361 CTGACGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCGGCACATGCCCGAGCCC
645 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* ** *
14662426 AGCATGTGCTGCCACAACTGTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
710 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * ** * * *
14662491 GACTGGGAATGAGCTCTGTATGCCTAAGTCAACCCATAAAACGAGCATGCGAGCGCTCAGCCAGC
775 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
*** * * *
14662556 CAGAGGGGCGGGATGCGCAAGCCATTGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCC
840 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* **
14662617 TGCTGCAGCAACCCTCAGTCCAAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14662681 ACCGATGAAACGAGC-A---GGC-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGT
65 ACCGACGAAACGAGCGAGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
14662741 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
14662806 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** ** * *
14662871 CTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTGTGGTTCGTGATGTTTTAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * **
14662936 GAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTCATGGCATGCACAAAAAA
325 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
14663001 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
14663066 ACACTTTAATGGCTACTGCCATCAAACCTGTAAAATATCAAATGCCCTTTAAGGGGGTGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
14663131 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
14663196 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
585 TGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* *
14663260 CGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
649 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
14663325 TGTGCTGTCGCAACCCTTTGTCCAGTCTGATGTTAGACTGGGAATGAACTTTGTATGCTTAGACT
714 TGTGCTGCCGCAA--C-----CC--TC-G--G-T---C-CGG--T---C--CG-AT-CTTAGACT
* * *
14663390 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACG
753 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * *
14663455 AGCGTGCGAGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCC
818 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
* * *
14663520 TTTGCGTGCTACCAATCC
883 TCTGCGTGCTGCCGATCC
* * ** *
14663538 TGCTACAGCAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14663603 CCGATGAAACGAGC-A---GGC-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
66 CCGACGAAACGAGCGAGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * **
14663663 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCTTATTTCTTTATGCCAATGCCATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
14663728 TTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGGC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
14663793 CCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA-GAGGTCGGGGTTTTTTAAAATTTTTTCA
261 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG-GTTCGAGATTTTTTAAAATTTTTTCG
** * *
14663857 GAAGGAGTTTTGGCATCAAACTTGGTAGACGTGATCCTTGAATATTTGTTGGCATGCACAAAAAA
325 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
14663922 AATCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
14663987 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
14664052 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCACCACACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** *
14664117 TGTGCGCACAACCCCCCCGGCCCCCCTTATCG-CTGGAACCCCAATATCACCGGTCAGGTTCTCC
585 TGTGCGCAC-ACCCCCCCGGCCCCCC-GATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
14664181 GGCAATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAG
647 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * ** * * * *
14664246 CATGTGCTACCGTAACCCTCATTCCGGTCTGGTCTTAGACTAGGAATGAACTCCATATGCTTAGA
712 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* ** * *
14664311 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCAAGCGGGCACTCAGCCGACCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * ** *
14664376 AAGGGGCAGGATGCGCATGCCGGAGATCGGCCGGGTAACCCTCTACGTGCTGCCGATCC
842 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * * *
14664435 TACTGCCACAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTACGCCTAACCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14664500 TCGACGAAAC-A---A----G-TGGGTGGGCACTACGTCGGCCAGAGAGACGAGATGCGAAAGCC
66 CCGACGAAACGAGCGAGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
14664556 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATGTTCATATTTCTGCATGCCAATGCCATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
14664621 TTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** ** * *
14664686 TCGTTTTCTATTTTTCGTGATTTTCAAAAGTTTTTACAGTTCGAGATTTTTTAAAATTTTTTTCG
261 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCG
* * *
14664751 GAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGGA-AAAAAA
325 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
14664815 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
14664880 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
14664945 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
14665010 TTTGCGCACACCCCCCCAGCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTCCTCC-AG
585 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-
* ** ** * * *
14665074 CGACGCTCCGGTGATGAAGCCCCAACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCA
649 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*** * * *
14665139 TGTGCTGCCGCAATGATC-GACCTGGTCCGATCTTATACTGGGAATGAACTCTGTATGCTTAGAC
714 TGTGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * **
14665203 AGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAACGTGCGGGCGCTCA-TTGGCCAG
778 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
** * * * *
14665267 AGGGGCGGGATGCGCAAGCCGACGATCGACC-GGTCCCCCTCTGTGTGCTGTCGATTC
843 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
14665324 TACTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14665389 CCGACGAAATGAGCGGGCGGGC-GGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCT
66 CCGACGAAACGAGCGAGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
14665453 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
14665518 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGCCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
14665583 TCATTTTCTATTTTTTACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTGGG
261 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * *
14665648 ATGGATTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAA
326 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
14665712 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGA
391 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
14665777 CACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
456 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
14665842 TC-AGGGTTTGTTGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
521 TCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * *
14665906 TGTGTGCACACCACCCCGCCCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
585 TGTGCGCACACC-CCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * * * *
14665971 ACGATGCTTTGGCGATGGTGCCCCGACAAAGGAAAATGTGGCACCAGCACATGCCCGACCCCAGC
648 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * **
14666036 ATCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACAGGGAATGAACTATGTATGCTTAGAC
713 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
14666101 TGGGAATGAACTCCGTTTGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCGCTTAGCTGGCCAG
778 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * ** *
14666166 AGGGGCGGTATGCGCAAGTCGATGATCGGTCGGGTCCCCCTCTGCGTGCT----A---
843 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
14666217 ---T---G--A-----GGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG----A-CGAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14666264 ACGAGCG-AACGGGC-AGGCGGGC-GGGCGGGCACTACACCGGCCTGAGAGACAGGATGCGCAAG
66 CCGA-CGAAACGAGCGA-GCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
14666326 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCAT
129 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
14666391 TTTTCTGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
14666456 ACTCGTTCTCTATTTTTAACAATTTTTGAAACTTTTTGCGGTTCGACATTTTTTAAAATTTTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
14666521 GAAAGGA-TTGTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGCATGCA-AAAA
324 GGAAGGAGTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* **
14666584 CAA-TCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCATCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14666647 GGGCACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14666712 TTCTCAAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * * *
14666777 CATGTGCGCACAGTGCCCTCGACCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
583 CATGTGCGCACA-CCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * * **
14666842 CGACGATGCTCTGGCGATGGCGCCCCAACGCAGAAAAATACCACACCAGCACATGCCCGAGCCCA
646 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
14666907 GCATGTGCTGCCACAA-AC-C--T-CGGTCCGA---T---CT--G-AT---CT---TA-----A-
711 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
14666946 ATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTTAGCCGACC
776 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * * *
14667011 GGAGGGGTGGGATGCTCAAGCCGGCGATCGGCCGGGTCCCCCTCTGCATGCTACGGATCT
841 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14667071 TGCTGTCGCAACCTTCGGTCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14667136 CCAACGAAACGAGCAAACGGGCGGACGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGAGCGGGC-G--GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14667201 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14667266 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
14667331 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGTGATTTTTTAAAATTTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
14667396 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAA
323 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
14667461 CAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
**
14667525 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCAGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14667590 TTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
14667655 CATGTGCGCACACCCCCCTCAGCCCCCAGATCGCCGGAACCCCAATGCCGTCGCTCAGGTTCTTC
583 CATGTGCGCACACCCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * **
14667720 GACGATGCT-CTAGCGATGGTGCCTC-AGCGAAGAAAAATGCGGCACTAGCACATGCTTGAGCCC
647 GACGATGCTCCGA-CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
14667783 AGCATGTGTTGCCGCAACCCTCGGTCCAGTCCGATCTTCGACTAGGAATGAACTCCGTATGCTTA
710 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * **
14667848 GACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAACGTACGGGTGCTCAATCGGC
775 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
14667913 CAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCTCCTCTGCGTGCTGCTGATCC
840 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14667974 TGCTGCCGCCACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGACAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
14668039 CCGACGAAATGAGCGAGCGGGAGGGCGGACGGGCACTACGTTGGCCAAAGAGACGGGATGCGTAA
66 CCGACGAAACGAGCGAGCGGG-CGG-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
14668104 GCCGTGGATCAAAAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTGCATGCCAATACCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
** * * *
14668169 TTTTTATTTCATGTAAATTCATACAAAGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
14668234 GACTTGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
14668299 -GGAGGGAGTTTTGGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
323 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14668363 AAATTCAGATAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * ** **
14668428 AGACACTTTAATGGCTACTGCCATCAAACCTGTAAAATCTCAAATGCTTTTTGTGGTTGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14668493 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCAACCATCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * *
14668558 CATATGCGCACA-CCCCTTGGCCCTCCCGATCGTCGGAGA-CCTAATGCCGTCGGTTAGGTTCTC
583 CATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGA-ACCCCAATGCCGCCGGTCAGGTTCTC
* ** *
14668621 CGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCGCA
646 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * * *
14668686 GCATGTGCTGTCGCAACCCTCGGTCCAATCCGGTCTTAGACTGGGAATGAATTCCATATGCTTAG
711 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
14668751 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GG-GCTCAGCCAGCC
776 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** * * *
14668814 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCATGCTACCGATCC
841 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
14668874 TGCTGCCGCAACCCTCAGTCCGGTCTAATCTTACACTGGGAATCAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14668939 CCGACAAAACGAGCGAGCGGGCAGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGAGCGGGC-GG-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
14669004 GTCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTACCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
** * * *
14669069 TTTTTATTTCATGTAAATTCATACAATGGTCCCTTCAGCTTTCACGTGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
14669134 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAACA-TTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA-ATTTTT
* * *
14669198 T-GGAAGGAGTTTTGGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAA
322 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14669262 AAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14669327 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
14669392 GTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACTAGTACCCATCACACA
517 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * *
14669457 TCATGTGCGCACACCCCCCCGACCCCCAAATCGCCGGAACCCCAATGCCGCCGGTCAGGCTCTCC
582 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
14669522 GATGATGCTTCGACGATGGTGCCCCGGCGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAG
647 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* ** * * * *
14669587 CTTGTGCTATCGCATCCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGA
712 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
14669652 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
** ** * * * *
14669717 GAGGGGTAGGATGCGCAAGCCAAGGATTGACCGGGTCCCCCTCTGTGTGCTGTCGATCC
842 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * **
14669776 TGCTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14669841 CCGACG-AA--A-CGAGC-GG-GAGGC-GGC-C-A-----G--AGAG-G-CGGAACGCACAAGCC
66 CCGACGAAACGAGCGAGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
14669888 GTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
14669953 TTATGGCTTGTAAATTCATACAATGGTCCCCTT-TGCCTTCACGTGAAGTTTCATGGCAAGACGA
196 TTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
14670017 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCG-GGTTTTTTAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * * *
14670081 AAAGGAGTTTTGGCCCCAAACATGATAGACGCGATCCTTATATTTTTGTTGGCATGGACAAAAAA
325 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
14670146 ATTCA-ATCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTTA
390 ATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
14670210 GACACTTTAATGACTACTGGTAGCAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* ** * **
14670275 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGTGAAGTTCCAGCATGCATCGCACATC
519 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
14670340 ATGTGCGCACACACCCCCGGCCACCCCGATAG-CAGAACCCTATTACCGTCGGTCAGGTTCTCCA
584 ATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
14670404 ACGATGCTTCGACGATGGTGCCGCGATGAAGAAAAATGCGGCACTAGCACATATAG-CCGAGCCT
648 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC--AT-GCCCGAGCCC
* * * * * ** * ** *
14670468 AGCGTTTGCTGTCACAACCCTCAGTCCGGTTTGATCTTACACTGATAATGAACTCCATATGCTTA
710 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
14670533 TACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
775 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
14670598 CAGAGGGGCGGGATGCACAAGCCGAGGATCGGCCTGGTCCCCCTCTTCGTGCTGCCGATCC
840 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
14670659 TACTACCACAACACTC-GATCTGGTCTGATCTTAGACTGGAAATGAACTCCGTATACCTAAGCCA
1 TGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
14670723 ACCGACGAAATGAGCGAGCGCGCGGGCGAGCGGGCACTACGCCGATC-GAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCGAGCGGGC-GG-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
14670787 AGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
** * * *
14670852 ATTTTTAT-ATTGTGTAAATTCATACAATGATCCCTTAATCCTTCACTTGAAGTTTCATGGCAAG
192 ATTTTTATGGCT-TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
14670916 ACGACTCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTACGGTTAGGGATTTCTTCAAATTTT
256 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* ** * *
14670981 TTCAGAACTAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTT-T-TTTTTTTTGGCATGCACAA
321 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14671044 AAAAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* ** * *
14671109 TC-GAACACTTTATTAACTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCT
451 TCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
14671173 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATTGCA
515 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
14671238 CATCATGTGCGCACACCCCCCCGACCCCCCCAATCGGCGGAACACCAATGCCGCCGGTCA-G--C
580 CATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
*
14671300 T-------T-CTCCGACGATGGTGCCCCG-CTGAAGAAAAATGCGGGACCAGCACATGCCCGAGC
644 TCCGACGATGCTCCGACGATGGTGCCCCGAC-GAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *** * * *
14671356 CTAGCTTGTGCTACCGCAACCCTCAGTCTATTCTGATCTTAGACTAGGAATGAACTCCTTATGCT
708 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
14671421 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACGAGCGT
773 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
14671471 ACCGTGGATG
Statistics
Matches: 8551, Mismatches: 1012, Indels: 431
0.86 0.10 0.04
Matches are distributed among these distances:
847 100 0.01
848 1 0.00
851 1 0.00
853 2 0.00
856 2 0.00
857 1 0.00
859 2 0.00
860 2 0.00
862 2 0.00
865 1 0.00
867 37 0.00
868 8 0.00
869 1 0.00
871 4 0.00
872 18 0.00
873 298 0.03
874 9 0.00
875 256 0.03
876 302 0.04
877 115 0.01
878 195 0.02
879 2 0.00
880 54 0.01
881 484 0.06
882 20 0.00
883 238 0.03
884 3 0.00
885 3 0.00
886 1 0.00
887 5 0.00
888 3 0.00
889 87 0.01
890 142 0.02
891 186 0.02
892 59 0.01
893 535 0.06
894 381 0.04
895 169 0.02
896 237 0.03
897 411 0.05
898 201 0.02
899 41 0.00
900 898 0.11
901 125 0.01
902 696 0.08
903 756 0.09
904 51 0.01
905 3 0.00
906 5 0.00
907 3 0.00
908 3 0.00
910 1 0.00
911 1 0.00
912 3 0.00
914 3 0.00
915 2 0.00
916 2 0.00
917 2 0.00
919 2 0.00
920 3 0.00
921 690 0.08
922 9 0.00
923 112 0.01
925 1 0.00
933 2 0.00
934 55 0.01
935 376 0.04
936 128 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:14669659 original size:26 final size:26
Alignment explanation
Indices: 14669620--14669672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14669610 CTGGTCTGAT
14669620 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
14669646 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14669672 C
1 C
14669673 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14671431 original size:26 final size:26
Alignment explanation
Indices: 14671393--14671445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14671383 CTATTCTGAT
*
14671393 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14671419 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14671445 C
1 C
14671446 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14672123 original size:699 final size:697
Alignment explanation
Indices: 14670786--14672153 Score: 1971
Period size: 699 Copynumber: 2.0 Consensus size: 697
14670776 CGGGATGCGC
14670786 AAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATAC
1 AAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATAC
*** * * *
14670851 CATTTTTATATTGTGTAAATTCATACAATGATCCCTTAATCCTTCACTTGAAGTTTCATGGCAAG
66 CATTTTTATAGCATGTAAATTAATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
14670916 ACGACTCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTACGGTTAGGGATTTCTTCAAATTTT
131 ACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACGTTTTACGGTTAGGGATTTCTTAAAATTTT
** * * * *
14670981 TTCAGAACTAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTTTTTTTTTTGGCATGCACAAAA
196 TTCAGAAC-AGTTTTCCCCCCAAACCTGGTAGACATGATCCTTTTTTTTGTTGGCATGCACAAAA
*
14671046 AAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTC
260 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTC
* * *
14671111 GAACACTTTATTAACTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTGAG
325 GAACACTTTAATAACTACTAGCAGCAAACCTATAAAATCTCAAATGATCTTTAAGGGGGTCTGAG
* * *
14671176 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATTGCACAT
390 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCAATCGCACAT
*
14671241 CATGTGCGCACACCCCCCCGACCCCCCCAATCGGCGGAACACCAATGCCGCCGGTCAGCTTCTCC
455 CATGTGCGCACACCCCCCCGACCCCCCCAATCGGCGGAACACCAATGCCGCCGGTCAGCTCCTCC
* ** * *
14671306 GACGATGGTGCCCCGCTGAAGAAAAATGCGGGACCAGCACATGCCCGAGCCTAGCTTGTGCTACC
520 GACGATGGTGCCCCGCTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* *
14671371 GCAACCCTCAGTCTATTCTGATCTTAGACTAGGAATGAACTCCTTATGCTTAGACTGGGAATGAA
585 GCAACCCTCAGTCTATTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAAATGAA
14671436 CTCCGTATGCCTAAGTCAACGCATGAAACGAGCGTACCGTGGATGTGA
650 CTCCGTATGCCTAAGTCAACGCATGAAACGAGCGTACCGTGGATGTGA
* *
14671484 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
1 AAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATAC
* * *
14671549 CATTTTTATGGCATGTAAATTAATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATAGCATGTAAATTAATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
14671614 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACGTTTTGCTGTTCGGTATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACGTTTTACGGTTAGGGATTTCTTAAAATTTT
* **
14671679 TT-TGAA-AGGATTTTCCCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATTTACA
196 TTCAGAACA-G-TTTTCCCCCCAAACCTGGTAGACATGATCCTT-T-TTTTTGTTGGCATGCACA
14671742 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-CTCCCCA
257 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGC-CCCCA
* ** * * *
14671806 TTTC-AGAGACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGATCTTTATGGGGGT
321 TTTCGA-ACACTTTAATAACTACTAGCAGCAAACCTATAAAATCTCAAATGATCTTTAAGGGGGT
* *
14671870 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATC
385 CTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGCCCAAGTACCAGCACCAATC
* * * * * *
14671935 GCACATCATGTGCGCACA-CCCCCCGGCCGCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
449 GCACATCATGTGCGCACACCCCCCCGACCCCCCCAATCGGCGGAACACCAATGCCGCCGGTCAGC
*
14671999 TCCTCTCG-CGATGGTGCCCTGAC-GAA-AAAATATACGACACCAGCACATGCCCGAGCCCAGCA
514 TCCTC-CGACGATGGTGCCCCG-CTGAAGAAAA-ATACGACACCAGCACATGCCCGAGCCCAGCA
* * * * * * *
14672061 TGTGTTGCCGTAACCCTCGGTCTGA-TCTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGAG
576 TGTGCTACCGCAACCCTCAGTCT-ATTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
14672125 TGGAAATGAACTCCGTATGCCTAAGTCAA
640 TGGAAATGAACTCCGTATGCCTAAGTCAA
14672154 AACACGAAAT
Statistics
Matches: 593, Mismatches: 66, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
695 1 0.00
696 1 0.00
697 30 0.05
698 184 0.31
699 322 0.54
700 55 0.09
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (697 bp):
AAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATAC
CATTTTTATAGCATGTAAATTAATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACGTTTTACGGTTAGGGATTTCTTAAAATTTT
TTCAGAACAGTTTTCCCCCCAAACCTGGTAGACATGATCCTTTTTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCG
AACACTTTAATAACTACTAGCAGCAAACCTATAAAATCTCAAATGATCTTTAAGGGGGTCTGAGT
TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCAATCGCACATC
ATGTGCGCACACCCCCCCGACCCCCCCAATCGGCGGAACACCAATGCCGCCGGTCAGCTCCTCCG
ACGATGGTGCCCCGCTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
CAACCCTCAGTCTATTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAAATGAAC
TCCGTATGCCTAAGTCAACGCATGAAACGAGCGTACCGTGGATGTGA
Found at i:14674460 original size:903 final size:898
Alignment explanation
Indices: 14671484--14677746 Score: 7158
Period size: 870 Copynumber: 7.1 Consensus size: 898
14671474 GTGGATGTGA
14671484 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
14671549 CATTTTTATGGCATGTAAATTAATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * * *
14671614 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACGTTTTGCTGTTCG-GTATTTTTTAAAATTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTT
* * ** * **
14671678 TTTTGAAAGGA-TTTTCCCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATTTACA
195 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
*
14671742 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
14671807 TTCAGAGACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGATCTTTATGGGGGTGT
325 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
14671872 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGC
390 GAGTTCTCAAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
14671937 ACATCATGTGCGCACACCCCCCGGCCGCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG---
454 ACATCATGTGCGCACACCCCCCCGCCCCCCCGATCG-CGGAACCCTAATGCCGCCGGTCAGGTTC
* * * *
14671999 TCC---T-C-TC-GCGATGGTGCCCTGACGAAA-AAATATACGACACCAGCACATGCCCGAGCCC
518 TCCGGATGCTTCGGCGATGGTGCCCCGAC-AAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
14672057 AGCATGTGTTGCCGTAACCCTCGGTCTGATCTGATCTTAGGCTGGGAATGAACTCCGTATGCTTA
582 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * ** * * * *
14672122 GAGTGGAAATGAACTCCGTATGCCTAAGTCAAAACACGAAATGAGAGTGCGGGCTCTCAGCCGGC
647 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
* * * * * *
14672187 CAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGCATG--GTG--CC-G-T-
712 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTTCGTGCTGCGATCCTGCTA
* * * *
14672245 ----AACCCTC-AGTTCAGTCCT-ACCTTAGGCTGGGAATGAACTCCGTATGCCTCAGCCAACCG
777 CCACAACCCTCGA-TCCAGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * * * *
14672304 ACAAAATGAGCGGGCGGGC-GCT-A-C-GACG----GCCA--A-AGAGGCAGAATGCGT
840 ACGAAACGAGCGGGCGCGCGGGTGAGCGGGCGCTACGCCACCAGAGAGACGGGATGCGC
* * * **
14672352 AAGCCGTGGATCGATAGGGTGATAGGTGGGTTTCGGCACATCTTTATATTT-TCGTTTGCCAATG
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATG
*
14672416 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAA
65 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * ** *
14672481 GACGACTCGTTTTCTATTTTTTACGATTTTTTGAAACTTTTTGTGGTTTC-AGATTTTTTAAACT
130 GACGACTCGTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTACGG-TTCGAGATTTTTTAAAAT
* * * *
14672545 TTTTTCGGAAGGCGTTTTGGCGCAAAACTTGGTAGACATGATCCTTGCATTTTTGTTGGCATGCA
193 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
*
14672610 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCC
258 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14672675 ATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAA-CGGGT
323 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14672739 GTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
388 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
14672804 CACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTCGGAA-CCTCAATGCCGCCGG-CTAG
453 CACATCATGTGCGCACACCCCCC-CGCCCCCCCGATCG-CGGAACCCT-AATGCCGCCGGTC-AG
* * * ** *
14672867 GTTCTCTGGCGATGCTTCGACGATGGTGCCCCTG-CGAAGAAAAATGCCACACCAGCACTTGCCC
514 GTTCTC-CG-GATGCTTCGGCGATGGTGCCCC-GACAAAGAAAAATGCGGCACCAGCACATGCCC
* * *
14672931 GAGCCCAGCATGTGCTGCCGCATCCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTTCGTA
576 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
14672996 TGCTTAGA-TATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTC
641 TGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * * ** *
14673060 AGCCGGCCAGAGGGGTAGGATGTGCAAGCCGAGGATTGATCGGGTCCCCCTCTGT-GTGCTACCG
705 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCT-TCGTGCT-GCG
** * ** *
14673124 ATCCCT-CTTTCGCAACCCTC-AGTCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCCTA
768 AT-CCTGCTACCACAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
14673187 AGCCAACCGACGAAACGA--------GC----GAG-AGGCG----G---CCAGAGAGGCAGAATG
831 AGCCAACCGACGAAACGAGCGGGCGCGCGGGTGAGCGGGCGCTACGCCACCAGAGAGACGGGATG
14673232 CGC
896 CGC
* * *
14673235 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCGTGCGAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
14673300 TATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTCCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
14673365 ACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGTTTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* ** *** *
14673430 TTCGAAAGGAGTTTTGGCCCCAAACACGGTAGATGCGATCCTTGTATTTTTGTTGGCATGGACAA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
*
14673495 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAAT
261 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14673560 TCAGACACTTTAATGACTACTGGCAGCAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTG
326 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14673625 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACGCATCGCAC
391 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
14673690 ATCATGTGTGCACACCCCCCCGCCCCCCCGATCGTGAAACCCTATTACCGCCGGTCAGGTTCTCC
456 ATCATGTGCGCACACCCCCCCGCCCCCCCGATCGCGGAACCCTAATGCCGCCGGTCAGGTTCTCC
*
14673755 AGTGATGCTTCGGCGATGGTGCCGCGACAAAGAAAAATGCGGCACCAGCACATATAG-CCGAGCC
521 -G-GATGCTTCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCAC--AT-GCCCGAGCC
* * * * ** ** ** *
14673819 TAGCATTTGCTGTCGCAACCCTTGGTCAAGTTTGATCTTAGACTGATAATGAACTCCATATGCTT
581 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
14673884 AGACTGGGAATGAACTCCGTATACCTAAGTCGACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
646 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * *
14673949 CCAGAGGGGCGGGATGCACAAGCCGAGGATCGGCCTGGTCCCCCTCTTCATGCTGCAGATCCTGC
711 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTTCGTGCTGC-GATCCTGC
* ** *
14674014 TACCACAACACTCGATCTGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCG
775 TACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
14674079 ACGAAATGAGCCGGCGCGCGGGTGAGCGGGCGCTACGCCGATC-GAGAGACGGGATGTGC
840 ACGAAACGAGCGGGCGCGCGGGTGAGCGGGCGCTACGCC-ACCAGAGAGACGGGATGCGC
*
14674138 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATAC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
** * *
14674203 CATTTTTATGTTTTCTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
14674268 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * * * *
14674333 TTCAGAAGGCA-TTTTAGCCCCAACCTTGGTAGACGTGATCCTTGTATTTGTGTTGGCATGCATA
196 TTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* *
14674397 AAAAAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14674462 TTCTGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGT
325 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
14674527 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
390 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
14674592 CATCATGTGCGCATACCCCCCCGGCCCCCCCGATCACCGTAACCCCAATGCCGTCGGTCA-GTT-
455 CATCATGTGCGCACACCCCCCC-GCCCCCCCGATC-GCGGAACCCTAATGCCGCCGGTCAGGTTC
* * * * *
14674655 T-C--A--C--CGGTGATGGTGCCCCGATAAAGAAAAATACAGCACCAGCACATGCCCGAGCCTA
518 TCCGGATGCTTCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
14674713 GCAAGTGCTGCCGCAACCCTCGGTCAGGTCCGATTTTAGACTGGGAATGAACTCTGCATGCTTAG
583 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * *
14674778 ATTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAACCGACC
648 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
* * * *
14674843 GGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCAT-TTGCGTGCTGTCGATCCTGCT
713 AGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTT-CGTGCTG-CGATCCTGCT
* * * * * *
14674907 GCCACAACCCTCAATCCAGTCTGGTCATAGATTGGGAATGAACTCCGTATACCTAAGCCAACCGA
776 ACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
14674972 CGAAACGAGAGGAC-CGGCAGGT----GGGCACTACGCCAGCCAGAGAGAC-AGACTGCGC
841 CGAAACGAGCGGGCGC-GCGGGTGAGCGGGCGCTACGCCA-CCAGAGAGACGGGA-TGCGC
*
14675027 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
14675092 CATTTTTACGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** *
14675157 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTTAGATTTTTTTAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * ** *
14675222 TTCGGAAGGAGTTTTAGCCCAAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGGCATGCACA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACA
* *
14675287 AAAAAATTCAGCTAAAAATTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14675352 TTCAGACACTTTAATGACTACTGGCAGCAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGT
325 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
14675417 GATTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCAGCGCA
390 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** ** * * *
14675482 CATCATGTGCGCGTACCCCCTGGCCACCCCGATCGCCGGAACCCTAATGCCGTCAGTCAGGTTCT
455 CATCATGTGCGCACACCCCCCCGCCCCCCCGATCG-CGGAACCCTAATGCCGCCGGTCAGGTTCT
* * * ** *
14675547 CTGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
519 C-CG-GATGCTTCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
14675612 AGCATGTGCTACCACAACCCTCAGTCTGGTCCGATCATAGACTGGGAATAAACTCCGTATGCTTA
582 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * *
14675677 GATTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCACTC-AGCTGC
647 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
* * * **
14675741 CA-A-TGGC---ATG-G---GCTGGGGATCGATCGGGTCCCCCT-TTGCGTGCTGTCGATCCTGC
712 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTT-CGTGCTG-CGATCCTGC
* * * ** *
14675796 TATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
775 TACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * * *
14675861 ACGAAACGAGAGGGGGGGTGGGTGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGC
840 ACGAAACGAGCGGGCGCGCGGGTGAGCGGGCGCTACGCC-ACCAGAGAGACGGGATGCGC
* * **
14675921 AAGCCGTGGATCGATAGGGTGGTAGGTGAGTTGAGGCACATCTTCATATTTCTGTGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
14675986 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
14676051 ACGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTATTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* *
14676116 TTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAT
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
14676181 AAAAATTCAGTTAAAAACTAGAAGTGTACAAGATTTTCTGACTATTTGAAAAAAGTTTCCCCATT
261 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
14676246 TCAAACACGTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
326 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
**
14676311 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
391 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
14676376 ATCATGTGCGCATACCCCCCCCGGCACCTCCGATCGCCAGAACCCCAATACCGTCGGTCAGGTTC
456 ATCATGTGCGCACA-CCCCCCC-GCCCCCCCGATCG-CGGAACCCTAATGCCGCCGGTCAGGTTC
* * ** * *
14676441 TCCGATGATGCTTCAGTGATGGTGCCCCGATGAAGGAAAATGCGGCACCGGCACATGCCCGAGCC
518 TCCG--GATGCTTCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
14676506 CA-CATGTGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCTT
581 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
14676570 AGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC-A---G
646 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* *
14676631 CC-GA-------G-T-------CC------C--CC---T----CT-GT-GTGCTGTCGATCCTAC
711 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTTCGTGCTG-CGATCCTGC
* * * *
14676663 TGCCACAACCCTCGGTCCAGT-TCAATCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACC
775 TACCACAACCCTCGATCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** * * *
14676726 GATGAAGCGAGCGGGCAAGCGGGCGACCGGTCGGGCACTACGCCAGCCAGAGAAACGGGATGCGC
839 GACGAAACGAGCGGGCGCGCGGGTGA---G-CGGGCGCTACGCCA-CCAGAGAGACGGGATGCGC
* * * **
14676791 AAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACCTCTTCATATTTTTGTGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
14676856 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGTAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
14676921 ACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
* * * * * * *
14676985 TTTCGAAAGTAGTTTTGTCGCCAAACTTGGTAGACATCATCCTTGTATTTTTCTTGGCATGCAAA
195 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* *
14677050 AAAAAATTAAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14677115 TTCAGACACTTTAATTGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
325 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
14677180 GAGTTGTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATCGCA
390 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
14677245 CATCATGTGCGCACA-CCCCCAGCCCCCCCGATCGCCGGAACCCTAACGCCGTCGATCAGG-T-T
455 CATCATGTGCGCACACCCCCCCGCCCCCCCGATCG-CGGAACCCTAATGCCGCCGGTCAGGTTCT
** * *
14677307 -C---T-C-T-GGCGATGGTGCCGTGACGAAA-AAAAATGCGGAACCAGCACTTGCCCGAGCCCA
519 CCGGATGCTTCGGCGATGGTGCCCCGAC-AAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
14677364 GCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
583 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
14677429 ACTGGGAATGAGCTTCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCC
648 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
* * * * ** *
14677494 AAAGAGGCGGGATGCACAAGCC-AGGGATCGACTAGGT-CCCCTTTTGCGTGCTGTCGATCCTGC
713 AGAGGGGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTT-CGTGCTG-CGATCCTGC
* * * * *
14677557 TAGCATAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTACGTATGCGTAAGCCAACC
775 TACCACAACCCTCGATCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
** * *
14677621 GACGAAACGAATGGGCTGTCAAGCAGGCGGTCGGGCGGGCGGGCATTACGCCGGCCAGAGAGACG
839 GACGAAACGAGCGGGC-G-C--GC--G-GGT-GAGCGGGC--GC--TACGCC-ACCAGAGAGACG
14677686 GGATGCGC
891 GGATGCGC
* ** *
14677694 AAGTCGTGGATCGATAGGGTGGTAGGCAGGTTTAGACACATCTTCATATTTCT
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
14677747 ATTTTTCACG
Statistics
Matches: 4636, Mismatches: 582, Indels: 319
0.84 0.11 0.06
Matches are distributed among these distances:
856 40 0.01
857 109 0.02
858 1 0.00
859 1 0.00
861 3 0.00
862 1 0.00
864 1 0.00
865 1 0.00
866 46 0.01
867 74 0.02
868 210 0.05
869 104 0.02
870 620 0.13
872 2 0.00
873 1 0.00
876 1 0.00
877 3 0.00
878 2 0.00
879 5 0.00
880 193 0.04
881 66 0.01
882 225 0.05
883 473 0.10
884 7 0.00
885 1 0.00
886 2 0.00
887 3 0.00
888 16 0.00
889 263 0.06
890 331 0.07
891 14 0.00
892 300 0.06
893 211 0.05
894 438 0.09
895 135 0.03
896 6 0.00
897 2 0.00
898 3 0.00
899 11 0.00
900 153 0.03
901 2 0.00
902 3 0.00
903 519 0.11
904 17 0.00
905 17 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCCGCCCCCCCGATCGCGGAACCCTAATGCCGCCGGTCAGGTTCTCC
GGATGCTTCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGA
GGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTTCGTGCTGCGATCCTGCTACCAC
AACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGCGCGGGTGAGCGGGCGCTACGCCACCAGAGAGACGGGATGCGC
Found at i:14675678 original size:26 final size:26
Alignment explanation
Indices: 14675649--14675699 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14675639 GGTCCGATCA
14675649 TAGACTGGGAATAAACTCCGTATGCT
1 TAGACTGGGAATAAACTCCGTATGCT
* *
14675675 TAGATTGGGAATTAACTCCGTATGC
1 TAGACTGGGAATAAACTCCGTATGC
14675700 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCT
Found at i:14676570 original size:26 final size:26
Alignment explanation
Indices: 14676541--14676593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14676531 CTGGTCTGAT
* * *
14676541 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14676567 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14676593 C
1 C
14676594 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Done.