Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 80 of 131
Found at i:14678249 original size:26 final size:26
Alignment explanation
Indices: 14678211--14678263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14678201 CCGATCCGAT
*
14678211 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14678237 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14678263 C
1 C
14678264 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14678458 original size:8 final size:8
Alignment explanation
Indices: 14678445--14678478 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
14678435 ATGAAACGAA
14678445 CGAGCGGG
1 CGAGCGGG
14678453 CGAGCGGG
1 CGAGCGGG
14678461 CGAGCGGG
1 CGAGCGGG
14678469 CGAGCGGG
1 CGAGCGGG
14678477 CG
1 CG
14678479 GGCACTATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.12, C:0.26, G:0.62, T:0.00
Consensus pattern (8 bp):
CGAGCGGG
Found at i:14682431 original size:26 final size:26
Alignment explanation
Indices: 14682380--14682432 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14682370 CCGGTCTGAT
*
14682380 CTTAGAATGGGAATGAACTCTATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
14682406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
14682432 C
1 C
14682433 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:14683288 original size:26 final size:26
Alignment explanation
Indices: 14683259--14683311 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14683249 CCAGTCCGAT
14683259 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
14683285 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
14683311 C
1 C
14683312 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:14684629 original size:867 final size:864
Alignment explanation
Indices: 14682500--14685063 Score: 3201
Period size: 879 Copynumber: 2.9 Consensus size: 864
14682490 TGCAAGCCGA
* * * * *
14682500 GGATCGA-CGGGTCCCCTTCTGCGTGCTGTCGATCCTGTTGCCGCAACCTTCGGTCGGGTCTGAT
1 GGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
*
14682564 TTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCGATGAAACGAGT-GGGTGGGCGGGCG
66 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAA-CGATGAAACGAGTAGGG-GGGC-GGCG
* * * *
14682627 GG---T-GGGCCAGAGAGACGGGATGCGTAAGTTC-TGGATCAAT-GGGATGGTAGGTGGGTTTA
127 GGCACTCGGGCCAGAGAGACGAGATGCGCAAG-TCGTGGATCGATAGGG-TGGTAGGTAGGTTTA
* *
14682686 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCC
190 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14682751 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAA
255 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
14682816 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAC
320 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
** *
14682881 GTGATCCTTGTATTTTTGTCAGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
385 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
14682946 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
450 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
14683011 TAAAATCTCAAATGCTCCTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCTA
515 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
14683076 TATAAGGGCCAAGTACCAGCACCCATCGTACATCGTGTGCGCACACCCCCCCTGGCCCCCCCGAT
580 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCTGGCCCCCCCGAT
* * * *
14683141 CGTCGGAACCCCAATG-C--C-ACCGG---TC-AGGTTCTCCGACGA---TGCCCCAACGAAGAA
644 CGTCGGAACCCCAATGCCGTCGACCGGTTCTCGAGATGCTCCGACGATGGTGCCCCGATGAAGAA
* * * * ** *
14683195 AAATACGACGCCA-G-CATAAGCCTGAGCCCAACATGTGCTGCCGTAACCCTCGGTCCAGTCCGA
709 AAATACG-CACCAGGACAT-A-CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGA
**
14683258 TCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACC
771 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG-AT-CC--A--T----
* *
14683323 CACGAAACGAGCGTGTGCGCACTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCGG
826 ------ACGA------G-G-ACTCA---GGCCAGAGGGGCGAGATGCACAAACCGG
* ** * * ** *
14683379 GGATCGGTC-AGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGCAACCCTCACTCTGGTTTGA
1 GGATCGATCGA-GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * * * **
14683443 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGTAGGCGGGC-AC-TT
65 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC-GATGAAACGAGTAGGGGGGCGGCGGG
* *
14683506 CGC-C-GGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCA
129 CACTCGGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCA
* * *
14683569 CATCTTCATATTGCTGCGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
194 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
14683634 AGCCTTCACGTGAAGCTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
259 AGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
14683699 TTACGGTTTGGG-TTTTCTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGAAGACGTG
324 TTACGGTTCGGGATTTT-TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
14683763 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
388 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
14683828 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
453 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
14683893 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGTTTTGATGAGGGATAGGGGGCCAATAT
518 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * *
14683958 AGGGGCCAAGTACCAGCACCCGTTGCACATCTTGTGTGCACA-CCCCCTGGCCCCCCCGATCGCC
583 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTC
*
14684022 GGAACCCCATTGCCGTCGACCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGATGAAGAAA
648 GGAACCCCAATGCCGTCGACC-GGTTCTC-GA-GATGCTCCGACGATGGTGCCCCGATGAAGAAA
* *
14684087 AATACAGCACCAGGACATACCCGAGCCCAGCATGTGGT-CCTGCAACCCTCGATCTGGTCTGATC
710 AATAC-GCACCAGGACATACCCGAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCTGGTCTGATC
*
14684151 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCC-AT-C-T-C-A-G-C-CA-
773 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGATCCATACGAGGACTCAG
* *
14684207 GCCAGAGGGGCGGGATGCACAAACTGG
838 GCCAGAGGGGCGAGATGCACAAACCGG
* *
14684234 GGATCGATCGAGTCCCCCTCTGCGT-CGTGTCGATCCAGCTGCCGTAACCCTCGGTCTGGTCTGA
1 GGATCGATCGAGTCCCCCTCTGCGTGC-TGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* *
14684298 TCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAATCGATGATACGAGTAGGCGGGCGGGCGG
65 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGATGAAACGAGTA---GGG-GGGCGG
** * *
14684363 ACGGGCACTACGTTGGCCAGAGAGATAAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTATG
125 -CGGGCACT-CG--GGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTAGG
* * *
14684428 TTTAGGCACATCTTCATATTTCTACATGCCAATTCCATTTTTATGGCTTGTAAACTCATACAATG
186 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
14684493 GTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTT
251 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
14684558 GAAATTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGGCCCAAACTTGGT
316 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
14684623 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACA
381 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14684688 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAA
446 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
14684753 CCTGTAAAATCTCAAATGCTATTTAAGGGGTTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGG
511 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * ** * * * *
14684818 CCAATGTAAGGGCCAACTAAAAGCACCCATCACACATCACGTGCGCACACCCCCCCGGCCCCCTC
576 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCC
* * * * * *
14684883 GATCGTCGGAACCCCAATGCTGTCGGTCGGGTTCTCCGATGATGCTCCGGCGATGGTGTCCCGGT
641 GATCGTCGGAACCCCAATGCCGTC-GACCGGTTCT-CGA-GATGCTCCGACGATGGTGCCCCGAT
* * * * *
14684948 GAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGT
703 GAAGAAAAATAC-GCACCAGGACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
*
14685013 CTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
767 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
14685064 TGTATGCCTA
Statistics
Matches: 1474, Mismatches: 161, Indels: 111
0.84 0.09 0.06
Matches are distributed among these distances:
854 1 0.00
855 119 0.08
856 2 0.00
858 2 0.00
859 6 0.00
860 1 0.00
861 1 0.00
862 3 0.00
864 1 0.00
867 441 0.30
868 171 0.12
869 5 0.00
870 1 0.00
871 1 0.00
877 32 0.02
878 8 0.01
879 450 0.31
880 96 0.07
881 5 0.00
882 3 0.00
885 2 0.00
887 2 0.00
888 11 0.01
889 2 0.00
890 2 0.00
891 100 0.07
892 3 0.00
893 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (864 bp):
GGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACGATGAAACGAGTAGGGGGGCGGCGGGCA
CTCGGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACA
TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
ACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTCGGA
ACCCCAATGCCGTCGACCGGTTCTCGAGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACG
CACCAGGACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGATCCATACGAGGACTCAGGCCAGAGG
GGCGAGATGCACAAACCGG
Found at i:14685054 original size:26 final size:26
Alignment explanation
Indices: 14685018--14685070 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14685008 CTGGTCTGAT
14685018 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
14685044 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14685070 C
1 C
14685071 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14691378 original size:26 final size:26
Alignment explanation
Indices: 14691342--14691391 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14691332 GGTCCGATCC
14691342 TAGACTGGGAATGAACTCCATATGTT
1 TAGACTGGGAATGAACTCCATATGTT
*
14691368 TAGACTGGGAATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCATATG
14691392 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGTT
Found at i:14693630 original size:877 final size:876
Alignment explanation
Indices: 14688535--14701323 Score: 14159
Period size: 877 Copynumber: 14.4 Consensus size: 876
14688525 TTTTAGCCCC
* ** * * *
14688535 GCACCCATCGCACATCATGTGTGCACA-CCCCCCTACCCCCTCGATCATCAGAACCCTAATTCCG
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCATCGGAACCCCAATGCCG
* * * ** ** * * * **
14688599 CCGATCAGGTTTTCCAACGATGCTTTGGCAATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCA
65 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
* * ** *
14688664 CATGCCCGAGCCCTGCATGTGCTGCCGCAACCCTCGGT-TCGGTCCAATCTTAGATTGGGAATGA
130 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGA
* * **
14688728 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGG
194 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGG
* *** * * * *
14688793 ATGCGTAAGTTAGGGATCGG-CTGGGTCCCCCTCTGCGTGGTGTCGATCCTGTTGTCGTAACCCT
259 ATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGT-GCAACCCT
* * * *
14688857 CGGTTCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGGCTAAGCCAACCGACGAAACGAATG
322 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A--
* * *
14688922 GGCGGGCGGGCGGGCGGGCGGGAGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGTCGTGG
384 -GCGGGCGGGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
14688987 ATCGATAGGGTGGTTGGTGGGTTTTGGCACATCTTCATATTTCT-AAGTGCCAATGCCATTTTTA
444 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTA
* * *
14689051 TGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCA
508 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
14689116 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTTAAATTTTTTC-GAA
573 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAA
* **
14689179 AGAGTTTTGGCCCCAAACTTGGTAGGTGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAA-
637 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AAT
* * * *
14689243 TCAGCTAACAACTCAAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTAAGAC
701 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
14689308 ACTTTAATGGGTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
766 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
14689373 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
831 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * **
14689419 GCACCCATCGCACATCATGTGCGCACACCCCCCCGTCCCCCTTGATCGCCGGAACCCCAATGCCG
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCATCGGAACCCCAATGCCG
* * * * * * * * * * *
14689484 TCGGTCAGGTTGTCCGACGATGCGCCGGCAATGGTGTCTC-GAGTAGAAAAATGCGACACCAACA
65 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
*
14689548 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCAGATCGATCTTAGACTGGAATGAACT
130 CATGCCCGAGCCCAGCATGTGCTGTCGCAA-CC-C--TC-G---G----T---CTGG--T---C-
* * * * * *
14689613 TCTATGCTTAGGCTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAACGTGCGGGCA
174 T-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * ** * ** * *
14689678 CTCAGCCGACCATAGGGGCGGGATGCACAAGCCGGGGATCAATCAGGTCCCCCTCTACGTGCTGC
237 CTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * * * * * * *
14689743 CAATCCTCCTGCCGTAACCTTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
302 CGATCCTGCTG-TGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
14689808 AGCCAACCGACGAAACGAGCGGGTAGACGGGCAAGCGGGCGGGCGGGGACTATGCTGGCCAGAGT
366 AGCCAACCGACGAAACGAGC-GG--G-C-GG---GCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * * * *
14689873 GAAGGGACGCGCAAGCCGTGTATCGATAGGGTGGGAGGTGGGTTTAGGTACATCTTCATATTTCT
423 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
14689938 ACATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
488 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* ** * *
14690003 TTTCATGGCAAGACGACTCGTTTCCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATT
553 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATT
* * *
14690068 TTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTT
618 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
14690133 TGGCATGCACAAAAACATTCAGGTAAAAACTCAAAGTGTACAAGATTTGGTGACCATTTGAAAAA
683 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
14690198 AGTGTCCCCATTTCAGACAGTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
748 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
14690263 TAAGGGGGTGTGAGTTCTCGAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
813 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
14690327 GAACCCATTGCACATCATGTGCGCACA----------CCCCC---C--C-G-ACCCC----CC--
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGT
* * * * ** * * * *
14690369 CGATCATGTTCTCCGGTGATGGTCCGGGGATGGTGCCCAGACGAAGAAAAATGTGGCACTAGCAC
66 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
** * *
14690434 ATGCCCGAGCCCAGCATGTGC-AACTGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAA
131 ATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * * * *
14690498 CTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGAGCTCAACCGGCCAGAGGGG-AGGG
195 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTA-GG
* * * * * * *
14690562 TTACGCAAGCCAGGGATCGGCCGAGTCCCCCTCTGCTTGCTGCCGATCCTACTGTCGCAACCCTC
259 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGT-GCAACCCTC
** * * * * * * * *
14690627 ATTCTGGACTGATCTTAGACTAGGAATGAAGTTCGTATGCCTAAGCCAACCGACGAAGCGGGCGG
323 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * *
14690692 GCGGGCGGACGGGGGGGCACTACGCCGACCTGAGAGACGGGATGCGCAAGCTGTGGATCGATAGG
388 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
14690757 CTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCGATTTTTATGGCTTGTAA
453 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
*
14690822 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
518 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * ** *
14690887 TTCATGATTTTTGAAACTTTTTAAGGTTC-AGGATTTTTTTAAATTTTTTCAAAAGAAGTTTTGG
583 TTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
14690951 CCCCAAACTTGGTAGACATGATCC-TGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAA
647 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * * *
14691015 CTCAAAGTGTACTAGATTTTGTGACCATTTCAAAAAAGTGTTCTCATTTCAGACACTTTAATGGC
712 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
14691080 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
777 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * **
14691145 AAGGGATAGGGAGCCAATATCAGGGCCAAGTAGAA
842 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
**
14691180 GCACCCATCGCACATCA--TGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCTA
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCG
* * * *
14691242 CCGGTCAGG-T-T----C--T-CT--GACGATGGTGCCCCGGTGAAAAAAAATACGGCACCAGCA
65 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
* * *
14691296 CATGCTCGAG-CCAACATGTGC--T-GCAACCCTCGGTTCGGTCCGATCCTAGACTGGGAATGAA
130 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGG-TC--T--G------G--T----CTG-A
* *
14691357 CTCCATATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGG
177 -T-C------TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
14691422 TCGCTCAGTCTGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGG-CTGGGTCCCCCTCTGCGTG
234 GCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTG
* * * * * * * * *
14691486 CTGCCAATCTTACTGTAGCAACCCTCAGTCCAGACCGATATTAGACTGGGAATGACCTTCGTATG
298 CTGCCGATCCTGCTGT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
14691551 CCTAAGCCAACCGACGAAATGAGCGGGCGAGCGGACGGGCGGGCACTACAACGGCCAGAGAGACG
362 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
14691616 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
427 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
14691681 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTC
492 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *
14691746 ATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTT
557 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
* * * *
14691811 ATAATTTGTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTGTTGGC
622 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
14691876 ATGCACAAAAACATTCAGCTAAAAAATGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
687 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * * *
14691941 TCCCTATTTCAGACACTTTAATAGCTACTGGCAGTAAACCTGTAAAATCTCAAACGCACTTTAAG
752 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
14692006 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCA
817 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
14692066 GCACCCATCGCACATC-TGGTGTGCACACCTCCCCGACCCCCTGATC-GCTGGAACCCCAATGCC
1 GCACCCATCGCACATCAT-GTGCGCACACCCCCCCGGCCCCCCGATCATC-GGAACCCCAATGCC
* ** * * **
14692129 GTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCTGGCAAAGAACTATGCGGCACCAGC
64 GTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
* ** **
14692194 ACATGCTCGAGCCCAGCATGTGCTACCATAACCCTCGGTCCAGTCCAATCTTAGATAGGGAATGA
129 ACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTC-G----G-----TC-----T--GG--T--
* * * * *
14692259 ACTCCGTAAACTTAGACTGGCAATGAACGCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCG
173 -CT--G--ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * *
14692324 GGCACTCAGCCGGCCAGAGGGGTAGGATGCGCAAGTCGGGGATCTGTCGGGTCCCCCTCTGCGTG
233 GGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * *
14692389 CT----A--C--C-GT--AACCCCCGGTTCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
298 CTGCCGATCCTGCTGTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * ** * *
14692443 CTAAGGCAACCGACGAAATGAG-GGAGCAGACGGGAGGGCGGGCGCTACATCGGCCAGAGAGGCA
363 CTAAGCCAACCGACGAAACGAGCGG-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * **
14692507 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACCCATCTTCATATTTCTGTGT
427 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
**
14692572 GCCAATGCCATTTTTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
492 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * * * *
14692637 ATGACAAGACGACTTGTTTTCTATTTTTTACGATTTTCGAAACTTTTGACGGTTCCAGATTTTTT
557 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
* *
14692702 AAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCTTT-TTGG
622 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGG
* * * *
14692766 CAAGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGT
686 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
14692831 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
751 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
14692896 GGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCTAGTACCA
816 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
14692957 GCACCCATCGCACATCATGTGCTCACACCCCCTCCGGCACCCCGATCATCGGAACCCCAAAGCTG
1 GCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCCCCCCGATCATCGGAACCCCAATGCCG
* * *
14693022 TCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCACGGCGAAGAAAAATGTGGCACCAGCA
65 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
*
14693087 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT-TGTCTGGTCTGATCTTAGACTGGGAATGAA
130 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * * **
14693151 CTTCGTATGCCTAAGTCATCCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAAAGGTAGGA
195 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGA
* * * * * **
14693216 TGCACAAGTCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTATTGCTGCAACCCTCG
260 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG-TGCAACCCTCG
* * *
14693281 GTCCAGTCTGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
324 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * * * *
14693346 CGGACGGGCGGCCGAGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGGCGCGGATTGATAGGG
389 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
14693411 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAA
454 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * * * * *
14693476 TTCTTAAAATGGTCCCTTAAGACTTCACGTGAAGTTT-ATTAGCAAGACAACTCCTTTTCTATTT
519 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTT
* * *
14693540 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGC
583 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
14693605 CCCAAACTTTGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
648 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
14693670 TCAAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
713 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
14693735 ACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATG
778 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
14693800 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
843 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
14693834 GCACCCATCGAACATCATGTGCGCACA-CCCCCTGGCCCCCCGATCGTCAGAACCCCAATGCTGT
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGT
** * * *
14693898 CGGTCAGGTTCTCCGATGATGCTCCGAC-ATGGTGCCCTGGCGAAGAAAAATACGGCAACAGCAC
66 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
* * *** ** *
14693962 CTGCCCTAGCCCAGCATGTGCTG-CTGCAACCCTCGGTCCATTCCAATCTTAGATTGGGAATGAA
131 ATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * * * * *** *
14694026 CTCCGTATGCCTAAGTGAACCCACGTAACGAGCGTGCCGGCGCTCAACCGACCAGATAAGCAGGA
195 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGA
* ** * *
14694091 TGCACAAGCCGGGGATCGGTCAAGTCCCCCTCTGCGTGCTGTCGATCCTGCTAGGGCAACCCTCG
260 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-GTGCAACCCTCG
* * *
14694156 ATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGG
324 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * ** * * * ** *
14694221 CGGGCGGGCGAGCGGGCACTGCATCGACCCGAGAGACGGGAAGCGTGAGCTGTGGATCGATAGGG
389 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * * *
14694286 TGGTATGTGGGTTTTGGCACATCTTCATATATCTTCGTGTCAATGCCATTTTTATGGCTTGTAAA
454 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
14694351 TTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTT-ATTAGCAAGACGACTCATTTTCTATTT
519 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTT
* * *
14694415 TTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGC
583 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
14694480 CCCAAACTTTGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAC
648 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
14694545 TCGAAGTGTACAGGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
713 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
14694610 ACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATA
778 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
14694675 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
843 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * ** * *
14694709 GCACCCATTGAACATCATGTGCGTACACCCCCCCGACCCCCTTATCGTTGGAACCCCAATGCCGT
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGT
* * * * *
14694774 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGTAGAAAAATACGGCAACAACAC
66 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
* * * * *** **
14694839 CTGCCCTAGCCCAACATGTGCTGCCGCAACCCTCGGTCCATTCCAATCTTAGACTGGGAATGAAC
131 ATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *****
14694904 TCCGTATGCCTAAGTGAACCTACGAAACGAGCGTGCCGGCGCTCAGTCGACCAGATAACCAGGAT
196 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGAT
* * * * * * *
14694969 GCACAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTAGGGCAACTCTCGA
261 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-GTGCAACCCTCGG
* * * *
14695034 TCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGAGC
325 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* ** * * ** *
14695099 GGGTGGGCGGGCGGGCACTACTTCGACCAGAGAGACGGGAAGCGTGAGTCGTGGATCGATAGGGT
390 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
14695164 GGTAGGTGGGTTTAGGCACATGTTCATATATCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
455 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
14695229 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
520 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * * * *
14695294 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAATGATTTTTTGCGC
585 CATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
** ***
14695359 CAAACTTTTTAGTTATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
650 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
14695424 GAAGTGTACAAGATTTTGTGACCATTTCAAAAAGGTGTCTCCATTTCAAACACTTTAATGGCTAC
715 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
14695489 TGGCAGCAAACCCGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
780 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
14695554 GGATAGGGGGCCAATATAAGGGCCAAGTACCA
845 GGATAGGGGGCCAATATAAGGGCCAAGTACCA
* ** *
14695586 GCACCCATCGCAAATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATACCG
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCG
* * ** *
14695651 CCAGTCAGGTTCTCCGGCGA---T----C----GTGCCCCGATGAAGAAAAATGCGGCATCAGCA
65 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
* *
14695705 CATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCGGTTCGATCTTATACTGGGAATGAA
130 CATGCCCGAGCCCAGCATGTGCTGTCGCAA-CC-C--T-C-G---G------T-CT-GG--T---
* *
14695770 CTCAGTTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGG
173 CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* ** *
14695835 GCGCTCAGCCAGCC-GAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCAT-CGTG
234 GCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC-TGCGTG
* * * * *
14695898 CTGCCGATCTTGCCGCTGAAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
298 CTGCCGATCCTGCTG-TGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14695963 CCTAAGCCAACCAACGAAACGA----GC--G-GGGCGGGTGGGCACTATGCCAGCCAGAGAGACG
362 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * *
14696021 GGATGCGCAAGCCGTGGATCGCTTGGGTGGTAGGTGGGTTTAGGTACATCTTAATATTTCTGCAT
427 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
14696086 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
492 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * *
14696151 ATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAAGC-TTTTGCAGTTCGGGATTTTT
557 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTACGGTTCGAGATTTTT
* * * * *
14696215 TCAAAATTTTTTCGAAAGAAGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGTATTTTTTTTG
621 T-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* ***
14696280 GCTTGCACAAAAAAAAAAAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
685 GCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * * *
14696345 GTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCTAACCTATAAAATCAT-GAATGCTTTT
749 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTT
*
14696409 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
813 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
14696473 GCAGCCTTCTCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCG
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCG
* * * * * * * * * *
14696538 CCGGTCAGGTTCTTCAGTGATGCTCCAATGATGGTACCCCGACGAAGAAAAATACGGTACCAGCA
65 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
* * ** * *
14696603 CATGTCTGAGCGTAGCATGGGCT-ACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
130 CATGCCCGAGCCCAGCATGTGCTGTC-GCAA-CC-C--T-C-G---G----T---CT-GG--T--
* ** *
14696667 ACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACG
173 -CT---GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * *
14696732 GGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAATCCGGTGATCAGCCGGGCCCCCCTCTCCGTG
233 GGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * ** * * *
14696797 CTACCAATCTTGCTGTTGCAACCCTTAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATG
298 CTGCCGATCCTGCTG-TGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * *
14696862 CCTAAGCCAACCG-CCAAA--A-----CGAGCAAGCGGGTGGGCACTATGCCGGCCAGAGAGAAG
362 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * *
14696919 GGTTGCGCAAGCCGTGGATCAATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCAT
427 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* * *
14696984 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGAGAAGTTTT
492 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** * * * *
14697049 ATGGCAAGACGACTCGTATTCTATTTTTCATGATTTTCAAAACCTTTTACAGTTCTAAATTTTTT
557 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTT
* * * * *
14697114 TAAAATTTGTTCGGCAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCTTTGTATTTTTTTTGG
621 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
** * *
14697179 TGTGCATAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
686 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
14697244 GTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCAT-GAACGCTCTTTA
751 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTA
*
14697308 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
815 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * **
14697370 GCACCCTTCGCACATCATGTCCGCATA-CCCCCCGAGCCCCCCCGATCA-CGGGAACCTTAATGC
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCG-G-CCCCCCGATCATC-GGAACCCCAATGC
* *
14697433 CGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAG
63 CGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAG
* * * ** * * * *
14697498 TACATGTCCGAACCTGGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGTTCTTAGACTGGGAATG
128 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* * *
14697563 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAG-GGTCACTC-GACCGGCAAGAGGGGT
193 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-GCGGGCGCTCAG-CCGGCCAGAGGGGT
* * * * * *
14697626 GGGATGCACAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCCTGTTGTCGCAACC
256 AGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGT-GCAACC
* * * ** * *
14697691 CTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTGAACCGATGAAACTAG
320 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * * * * *
14697756 TGGGCGGGCGGG-GGATCTGGCACTACGTCGGCCAGAGTGACGGGATGCACAAGCTGTGGGTCGA
385 CGGGCGGGCGGGCGG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* ***
14697820 TAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
449 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
14697885 GT-AATTCATACAATGGTCCCTTAGGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCT
514 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
14697949 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTAAAATTATTTCGGAAGGGGTTT
579 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
14698014 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
644 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
14698079 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAC
709 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
14698144 GGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
774 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
14698209 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
839 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
14698247 GCACCCATCACACATCATGGGCGCACA-CCCCCCGACACCCCCGATC-GCGGGAACCCTAATGCC
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCATC-GGAACCCCAATGCC
* * * ** *
14698310 GCCGGTCAGGTTATCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGC
64 GTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
** * ** * *
14698375 ACATGCTTGAACCTGGCATGTGCTGCCGTAACCCTCGGTCCGTTTCGATCTTAGACTGGGAATGA
129 ACATGCCCGAGCCCAGCATGTGCTGTCGCAA-CC-C--T-CG----G----T---CT-GG--T--
* * * *
14698440 ACTCCGTATGCTTTGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGGAACGAGTGTGCG
173 -CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* ** * * * * * * * ** *
14698505 AGCATTCAGTCGACCAGAGGGGCAGGATACGCAAGCCGGGGACCGATCAGGTCCCCCTGGGTGTG
233 GGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
** * *** * * * * * *
14698570 CCCCCGATCTTGCTACCACAACACTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTTCATATG
298 CTGCCGATCCTGCT-GTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14698635 CCTAAGCCAACCAACGAAACGAGCGGGC-GACGGGCGGGCGGGCACTACACCGGCCAGAGAGACG
362 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * **
14698699 GGTTGCGCAAGCCGTGGATCGATAGGGTGTTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
427 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
14698764 GCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
492 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
14698829 ATGGCAAGACGACTCGTTTTCTTTTTTTCATGATTTTTGAAACCTTTTACGGTTCGAGGTTTTTT
557 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
* * *
14698894 TAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGGAGACGTGATCCTTGTATTTTT-TTGGC
622 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
14698958 ATGCTCAAAACAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGA-CACTTGAAAAAAGTG
687 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
** ** **
14699022 TCCCCATTTTGGACACTTTAATGGCTACTGGCAGCAAATTTGTAAAATCTCAAATGCTCTTTTTG
752 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* **
14699087 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGGAAGTACCA
817 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* ** * *
14699147 GCACCCATCGCACATCATGTG-TCACA-CCCCCCGATCCCCCGATCGTCGGAACCCCAATGCTGT
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGT
* ** * * * * * *
14699210 CGGTCAGGTTTTTTGACGATGCTCTGGCGATGGTGCTCTGGCGAAGAAAAATGCGGTACCAGCAC
66 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
* *
14699275 ATGCCCGAGCCCCGCATGTGCTGTCGTAACCCCCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
131 ATGCCCGAGCCCAGCATGTGCTGTCGCAA--CCC--TC--G---G----T---CT-GG--T---C
* * * *
14699340 TTTGTATGCTTAGACTGGGAATTAACTCCGTATGCCTATGTCAACCCACGAAACGAGTGTGTGGG
174 --TG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * ** *
14699405 CACTCAGCCGACAAGAGGGGTGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTGCC
235 CGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * * * **
14699470 GCCGATCTTGTTGTCACAACCCTCGGTCCGGTCTGATCGCAGACTGGGAATGAACTCCGTATGCC
300 GCCGATCCTGCTGT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * *
14699535 TAAGCCAACCCATGAAACGAGCGGGCGGGCAGGCGAGCGGGCACTACGCCGACCAGAGACACGAG
364 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * ***
14699600 ATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGTACATCTTCATATTTCTATGTGC
429 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * *
14699665 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCAC
494 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * * * *
14699730 GGCAAGACGACTCGTTTTCTATTTTTAACGA-TTTTCAAACCTTTTTGCAGTTCGGGATTTTTTC
559 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTACGGTTCGAGATTTTTTA
* *
14699794 AAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCA
623 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
14699859 CGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATATTGTGACCATTTGAAAAAAGTGT
688 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
14699924 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGG
753 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
** *
14699989 GGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGA
818 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
14700048 GCACCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCATCGGAACCCCAATGCCA
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCG
* * * ** ** *
14700112 CCGGCCAGGTTCTCCGGCGATGCTCCAACGATGAAGCCCCGATGAAGAAAAATGCGACACCAGCA
65 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
* * * *
14700177 TATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAA
130 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * **
14700242 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGA
195 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGA
* * * * * * * *
14700307 TGCACAAGCCAGGGATCGCTCGGGTCCCCTTCTGTGTGCTGTCGATCCTGCTGTCGGAACCCTTG
260 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGT-GCAACCCTCG
* * * * *
14700372 GTCCGGTCCAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACAGGCGAAACAAGCGGG
324 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * ** *
14700437 CGGGCGGCCGGGCGGGCACTACGCCGGCCAGAGACACAAGATGTGCAAGCCGTGGATCGATAGGG
389 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * *
14700502 TGGCAGCTGGGTTTTGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTAGTAAA
454 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
14700567 TTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
519 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * **
14700632 TCACGATGTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
584 TCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
14700697 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
649 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
14700762 CGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTA
714 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
14700827 CTGGCAGCAAACCTGTAAAATCTCAAAAGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
779 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
14700892 GGGATAGGAGGCCAATATAAGGGCCTAGTACCA
844 GGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** *
14700925 GCACCCATCGTGCATCATGTGCGCACACCCCCCCGGCCCTCCCGATCGTCGGAACCCCAATGCCG
1 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCATCGGAACCCCAATGCCG
* ** * * *
14700990 TCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCATGTGCT
65 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCA----CC
** * * *
14701055 A-CGACAACCCTCGATCTGATCCCAGCATGTGCTAT-GACAACCCTCGGTCTGGTC-CATTCTCA
126 AGC-ACATGCC-CGA---G--CCCAGCATGTGCTGTCG-CAACCCTCGGTCTGGTCTGA-TCTTA
* * * * * * * * * *
14701117 GACTGGGAATGAACTTCGTACGGCTAAGTCAACCAACGAATCGAGCATACGGGCGTTTAGCCGAC
182 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** ** * *** * *
14701182 CAGAGAGGCG-A-GATACGTAAGCCGACGATCAATCGGATCCCCCTCTGCCCACTGCGGATCCTA
247 CAGAG-GG-GTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** * * * * * * *
14701245 CAATCACAACCCTCGGTCTGATCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAACCCAACT
310 CTGT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
14701310 GATGAAACAAGCGG
374 GACGAAACGAGCGG
14701324 ACGGATGGGC
Statistics
Matches: 10245, Mismatches: 1365, Indels: 586
0.84 0.11 0.05
Matches are distributed among these distances:
851 8 0.00
853 202 0.02
854 247 0.02
857 2 0.00
858 1 0.00
859 12 0.00
860 2 0.00
861 7 0.00
862 182 0.02
863 41 0.00
864 2 0.00
865 111 0.01
866 2 0.00
867 53 0.01
868 8 0.00
869 4 0.00
870 5 0.00
871 168 0.02
872 9 0.00
873 4 0.00
874 70 0.01
875 724 0.07
876 178 0.02
877 2186 0.21
878 220 0.02
879 105 0.01
880 4 0.00
881 9 0.00
882 7 0.00
883 5 0.00
884 106 0.01
885 745 0.07
886 270 0.03
887 248 0.02
888 233 0.02
889 12 0.00
890 11 0.00
891 529 0.05
892 231 0.02
893 68 0.01
894 5 0.00
895 4 0.00
896 15 0.00
897 308 0.03
898 728 0.07
899 425 0.04
900 207 0.02
901 312 0.03
902 332 0.03
903 213 0.02
904 5 0.00
906 4 0.00
907 378 0.04
908 256 0.02
909 4 0.00
910 1 0.00
911 12 0.00
912 2 0.00
915 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (876 bp):
GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGT
CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGAT
GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTGCAACCCTCGGT
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCA
Found at i:14696687 original size:26 final size:26
Alignment explanation
Indices: 14696651--14696703 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14696641 CCGGTCTGAT
14696651 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14696677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14696703 C
1 C
14696704 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14699372 original size:26 final size:26
Alignment explanation
Indices: 14699322--14699374 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14699312 CTGGTCTGAT
**
14699322 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14699348 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14699374 C
1 C
14699375 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14701741 original size:26 final size:26
Alignment explanation
Indices: 14701705--14701756 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14701695 TTCCAAAGTT
* *
14701705 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
14701731 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
14701757 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14703416 original size:873 final size:866
Alignment explanation
Indices: 14701730--14703500 Score: 2572
Period size: 873 Copynumber: 2.0 Consensus size: 866
14701720 ACTCCGTATG
* * *
14701730 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTCCAGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCAGGCGCTCAGC
* * * * *
14701795 CGACCAAAGGGGCAGGATGCTCATGCCGAAGATCGATCGGGTAACACTTTTCGTGCTGCTGATCC
66 CGACCAAAGGGGCAGGATGCGCAAGCCGAAGATCGACCGGGTAACACTCTGCGTGCTGCTGATCC
*
14701860 TACTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATCGACTCCGTATGCCTAAGCCAA
131 TACTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATCGACTCCGTATGCCGAAGCCAA
* *
14701925 CCGACGAAACGAACGGGTGGGCACTACGTCGGCTACAGAGACGGGATGCGAAAGCAGTGGATCGA
196 CCGACGAAACGAACGGGCGGGCACTACGTCGGCTACAGAGACGGGATGCGAAAGCAGTGGATCAA
* *
14701990 TAGGGTGGTAGGCGGGTTTCGGCACATGTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
261 TAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
14702055 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCT
326 GTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTCTCT
* * *
14702120 ATTTTTCACGTTTTTCCAAAGTTTTTCCGGTTTGAGATTTTTTAAAATTTCTTTCGGAAGGAGTT
391 ATTTTTCACGTTTTTCCAAACTTTTTCCGGTTCGAGATTTTTTAAAATTTCTTTCAGAAGGAGTT
* * * *
14702185 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTA
456 TTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAAATCAGCTA
14702250 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
521 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
14702315 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTT
586 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTT
14702380 TGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
651 TGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* *
14702445 CCCCCCCGGCCCCCCTAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCG
716 CCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * *
14702510 ACGATGGAGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCTCAAGCCCAGCATGTGCTCCCG
781 ACGATGGAGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAACATGTGCTCCCA
*
14702575 CAACCATTGGCCTGGTCCAAT
846 CAACCATTGGCCTGATCCAAT
* * * * *
14702596 CTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATCG-AATGAGTGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTCCAGGCGCTCAG
* * * * ** * ** *
14702660 CCGGCTAGAGGGGCGGGATGCGCAAGCCGGCGATCGGCCGGGTCCCCCTCTGCGTGCTG-TCGAT
65 CCGACCAAAGGGGCAGGATGCGCAAGCCGAAGATCGACCGGGTAACACTCTGCGTGCTGCT-GAT
* * *
14702724 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT-GAACTCCGTATGCCGAAGC
129 CCTACTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATCG-ACTCCGTATGCCGAAGC
* **
14702788 CAACTGACGAAATGAGCGGGCGGGCGGGCAGGC-AC-TAC-GCTAACCAAAGAGACGGGATGCGA
193 CAACCGACG-AA--A-CGAACGGGCGGGCA--CTACGT-CGGCT-A-C--AGAGACGGGATGCGA
* *
14702850 AAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
247 AAGCAGTGGATCAATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
14702915 CATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
312 CATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAG
* * *
14702980 ACGACTCGTTCTCTATTTTTCATGATTTTT-GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
377 ACGACTCGTTCTCTATTTTTCACG-TTTTTCCAAACTTTTTCCGGTTCGAGATTTTTTAAAATTT
* * * *
14703044 -TTTCAGAAGGATTTTTGGCCCTAAACTTAGTAGACATGATCTTTGTATTTTTTTTCGCATGCAC
441 CTTTCAGAAGGAGTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTGTTCGCATGCAC
**
14703108 AAAAAAAATCAGCTAAGAAA-TCGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
506 AAAAAAAATCAGCTAA-AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
14703172 ATTTCGGACACTTTAGTGGCTTCTGGCAGCAAACTTATAAAATCTCAAATGCTTTTTAAGGGGGT
570 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGT
* * * * *
14703237 GTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTATCTGCACCCATTG
635 GTGAGTTCTCAAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** *
14703302 CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGGTCGCCGGAACCCTAATGCCGTCGGTCAGGT
699 CACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * * *
14703366 TCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAG
764 TCTCCGACGATGCTCCGACGATGGAGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCAAG
* * * *
14703431 CCCAACATGTGCTGCCACAACCTTTGGTCTGATCCGAT
829 CCCAACATGTGCTCCCACAACCATTGGCCTGATCCAAT
14703469 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
14703501 CCAATCGAAG
Statistics
Matches: 804, Mismatches: 84, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
865 2 0.00
866 166 0.21
867 4 0.00
869 1 0.00
870 15 0.02
871 4 0.00
872 2 0.00
873 362 0.45
874 243 0.30
875 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (866 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCAGGCGCTCAGC
CGACCAAAGGGGCAGGATGCGCAAGCCGAAGATCGACCGGGTAACACTCTGCGTGCTGCTGATCC
TACTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATCGACTCCGTATGCCGAAGCCAA
CCGACGAAACGAACGGGCGGGCACTACGTCGGCTACAGAGACGGGATGCGAAAGCAGTGGATCAA
TAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTCTCT
ATTTTTCACGTTTTTCCAAACTTTTTCCGGTTCGAGATTTTTTAAAATTTCTTTCAGAAGGAGTT
TTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAAATCAGCTA
AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTT
TGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
ACGATGGAGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAACATGTGCTCCCA
CAACCATTGGCCTGATCCAAT
Found at i:14705104 original size:26 final size:26
Alignment explanation
Indices: 14705053--14705105 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14705043 CCAATCCTAT
* *
14705053 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14705079 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14705105 C
1 C
14705106 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14706880 original size:26 final size:26
Alignment explanation
Indices: 14706851--14706903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14706841 CTGGTCTGAT
*
14706851 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14706877 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14706903 C
1 C
14706904 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14707778 original size:26 final size:26
Alignment explanation
Indices: 14707742--14707794 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14707732 ATGGTTCGAT
14707742 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14707768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14707794 C
1 C
14707795 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14708693 original size:26 final size:26
Alignment explanation
Indices: 14708664--14708716 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14708654 CCGATCCAAT
14708664 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14708690 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14708716 C
1 C
14708717 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14709594 original size:26 final size:26
Alignment explanation
Indices: 14709565--14709617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14709555 TCGATCCGAT
14709565 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* * *
14709591 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14709617 C
1 C
14709618 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14711006 original size:906 final size:905
Alignment explanation
Indices: 14703466--14711145 Score: 9395
Period size: 889 Copynumber: 8.6 Consensus size: 905
14703456 GGTCTGATCC
* *
14703466 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TCGAAGAAATGA----A--CGGGCG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCGGAGGCGGGCG
* *
14703524 GGCGGGCGGGCACTACGTCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAG
65 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
14703589 GTGGGTTTAGGTACATCTTCATATTTCT-TCATGCCAATGCCTTTTTTATGGCTTGTAAATTCAT
130 GTGGGTTTAGGCACATCTTCATATTTCTAT-GTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * **
14703653 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTCTCTATTTTTCACA
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* ** * *
14703718 AATTTTGAAACTTTTTGTGGTTCGGGATTTCTT-AAATTTTTTCGGAAGTAGTTTTGGCCCCAAA
259 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
14703782 CTTGGTAGACGTGATCCTTGTATTTTTGTTGACATGCACAAAAAAAATCAGCTAAAAACTCAAAG
324 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
14703847 TGTACAAGATTTTGTAACCATTCGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGAC
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
14703912 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCATGTTTGATGAGGGAT
454 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
14703977 AGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGCGCGCACACCCCCCCGGC
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
* * *
14704042 GCCCCCCGATCATC-GAAACACCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGT
583 -CCCCCCGATCGTCAG-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
* * * ** *
14704106 GCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGTTGCAACCGTC
646 GCCCCAATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * *
14704171 AGTCCGGT-TCGATCTTAGACTGGGAATGAACTCTGTGTGCATAGACTGGGAATGAACTCCGTAT
711 GGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
14704235 GCCTAAGTCAACCCAC-AGAACGAGCCTGCGGGCTCTCAACCGGCCAAAGGGGCGGGATGCGTAA
775 GCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCTAA
* * ** * *
14704299 GCCAGAGATCGGTCGGGTCCACCTCT--GTG-TG-CTA-CC-G-T-----AACCCTCGGTCCGGT
839 GCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGT
*
14704352 CC
904 CT
** * * * * *
14704354 GATCTTAGACTAAGAATGAACTCCGTATGCCTAACCCAACCGATG-AA--A--TGA-GCGGGTGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGGCGGGCGG
** ** ** *
14704413 GCGGGCGATCACTACACCGGCCAGAGAGAATGGATGCGCAAGCCGTGGATCGATACGGTGGTAGG
66 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * ***
14704478 TGGGTCTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
131 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
14704543 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
196 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * * *
14704608 TTTTGAAACTTTTCACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGTCCAAAACT
261 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
14704673 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGATAAAAAATCGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
14704738 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
391 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14704803 CAAACCTGTAAAATCTCAAATGCTTTTTACGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
** * * * *
14704868 GGGGCCAATATAAGCACCAAGTACCAGCAACAATTGCACATCATGTGTGCACA------------
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * * * *
14704921 -TCG-TCG-AAG-A-CCCAATGCTGTCGGTCAGGTTCTACGGTGATGCTTC-GCGATGGTGCCCC
586 CCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
** * * * *
14704980 GGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCACAGCATGTGCTGCCGTAACCCTCGGTCC
651 AATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC
** * ** *
14705045 AATCCT-ATCTTAGATTGGGAATGAACTCTATATGCTTAGACTGGGAATGTACTCCGTATGCCTA
716 GGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
14705109 AGTCAACCCACGAAACGAGCGTGC-GG-GCTCAGCCAGCCAGAAGGGCGGGATGCGC-AAGCCGG
780 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-CTAAGCCGG
* * * *
14705171 GGATCGACCAGGT-CCCCTCTACGTGCTGCCGATCATGCTGCCGCAACCCTCGGTCCAGTCT
844 GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT
* * * *
14705232 AATCTTACACTGGGAATCAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGA--CGGGCAG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGGCGGGCGG
* *
14705295 ACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
66 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*** ** *
14705360 TGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATTTCATGTAAATTCATAC
131 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* **
14705425 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAAT
196 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
14705490 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAACTTTTTT-GGAGGGAGTTTTGGCCCCATACT
261 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* **
14705554 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCATATAAAAACTCGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
14705618 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
391 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14705683 TAAACCTGTAAAATATCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * *
14705748 GGGCCCAATATAAGGGCCAAGTACCATCACCCGTCGCACATCATGTGCGCACACCTCCCGACCCG
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * * * * * *
14705813 CTCGATCGTCAAAACCTCAATGCTGCCGGTCAGGCTCTCCGACGATGCTTCGGTGATAGTGCCCC
586 CCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * *
14705878 AATGAAGAAAAATGTGGCACGAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTAC
651 AATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC
* * * *
14705943 GGTTTGGTCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCCTATGCCTAA
716 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * * *
14706008 GTCAACCAATGAAACAAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGGGATGCGTAAGTCGAGG
781 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCTAAGCCGGGG
* * * ** * *
14706073 ATCGACCGGGTCCCCCTTTGCATGCTGTCGATCCTGCTGCCATAACCCTCAGTCCGGTTT
846 ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT
* * *
14706133 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--A----GACGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGGCGGGCGG
* * * * *
14706192 GCAGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGG
66 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
14706257 TGGGTTTAGACACATCTTCATATTT-T-TGCATGCCAATGCAATTTTTATGGCTTGTAAATTCGT
131 TGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
14706320 ACAATGGTCCCTCAAGCCTACGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
** *
14706385 ATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGTAAGGAGTTTTGGCCCCAAA
259 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
14706450 CTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
324 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
14706515 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGT
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
14706580 AGCAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTAATGAGCGAT
454 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
14706645 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCCGGC
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
* * * * * **
14706710 CCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCTGATGATGGTGC
583 CCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * ** * * * *
14706775 CCCGAA-AAAGAAAAATACGGTACCAGCACATGCCAGAGCCCAGCATGTGCCACTGTAACACTCA
648 CCC-AATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
14706839 G-TCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATTAACTCCGTATG
712 GTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14706903 CCTAAGTCAACCCATGAAATGAGCGCGCGGGCGCTCAG-CTGCCAGTGGCGCGGGATGCGC-AAG
776 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-CTAAG
* * * * * * * *
14706966 CCAGGGATCGACCGGATCCCACTCTGCGTGCTGTCGATCTTGCTGTCGCAACCTTCGGTCTGGTC
840 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTC
*
14707031 C
905 T
* *
14707032 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG-GG-GGGCGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGGCGGGCGG
*
14707095 GTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
66 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * **
14707160 TGGATTGAGGCACATCTTCATATTTCTACGTGCCAATGGGATTTTTATGGCTTGTAAATTCATAC
131 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
14707225 AATGCTCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
196 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * *
14707290 TTTCGAAACTTTTTATGATTCGGGATTTATTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACT
261 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * *
14707355 TGGTAGACATAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTGGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
14707420 TACAAGATTTTGTGACTATTTGAACAAAGTTTCCCCATTTTCAGACACTTTAATGGCTACTGGCA
391 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCA
*
14707485 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
14707550 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * *
14707614 CCGCGATC-ACTGGAACCCCAATGCCACCGGTCAGGTTCT-C--CG--G-T-----GATGGTGCC
585 CCCCGATCGTC-AGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* ** * * *
14707667 CCGATGAAGAAAAATGCGAAACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTTGGT
649 CCAATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
14707732 AT-GGT-TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
714 -TCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14707795 CTAAGTGAACCCACGAAACGAGCGTGCGGACGCTCAGTCGGCCAGAGGGGCGGGATGCATAAGCC
777 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCTAAGCC
** * * * * *
14707860 GGGGATCGGTCGGGTCCCCCTTTGCATGCTGCCGATCCTGCTGTCGCAACCCTCGGACCAGTCT
842 GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT
* * * * *
14707924 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCGAACCGACGAAACGAGTGGGCGGGCGGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAG-CGG-AGGC-GGG
* *
14707989 CGGGGTCGTGCGGGCGAGAACTACGTCGGCCA-AGAGAC-GGATGCGCCAAGTCGTGGATCAGAT
63 C-GGG-CGGGCGGGC----ACTACGTCGGCCAGAGAGACGGGATGCG-CAAGCCGTGGATC-GAT
* * **
14708052 AGGCGTGGTTGGCGGGTTTAGGCACATCTTCATATTTCTGCATGTGCC-ATGAGATTTTTATGGC
120 AGG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGTGCCAATGCCATTTTTATGGC
* * *
14708116 -TGTAAA-TCATACCAATGGGTTCCTTAAGGCCTTCACATGAAGTTTCCAT-GCAAGACGACTTG
182 TTGTAAATTCATA-CAAT-GGTCCCTTAA-GCCTTCACGTGAAGTTT-CATGGCAAGACGACTCG
* * ** * *
14708178 TTTTTCATATTTTTCACGGTTTTCAAAAAC-TTTTACGGTTCAGGATTTTTGAAAA--TTTTCGG
243 -TTTTC-TATTTTTCATGATTTT-TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
** * *
14708240 AATTAGTTTTTGGCCCCAAACTTGGTAGGGACGTGATCCTTGTA-TTTTGTGGGAATGCAGC-AA
305 AAGGAG-TTTTGGCCCCAAACTTGGTA--GACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAA
* *
14708303 AAAA-TCAGGCTAAAAAACTCGAAGTGTAGAAGATTTTGCTGACCATTTG-AAAAAGTGCCCCCA
366 AAAATTCA-GCT-AAAAACTCGAAGTGTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCA
* *
14708366 TTTCAGACCAC-TTAATGGCGACTAGGCAAC-AACCTGTAAAATCTCCAAATGCTCTTTGAA-GG
428 TTTCAGA-CACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCT-CAAATGCTCTTT-AAGGG
* ** * *
14708428 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGTTCAATATAAGGGCCAGGTACTAGCACCCA
489 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * ** ** *
14708493 TCGCACATCATGTGCACACATCCCCCCGACCCCCCGGATCCCCAGAACAGCAATGCCGCCGGCCA
554 TCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCA
* * * *
14708558 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGTGATA-AGAAATGCGGCACCAGCACATGCC
618 GGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCAATGA-AGAAAAATGCGGCACCAGCACATGCC
* * * * **
14708622 CGAGCCCAACATGTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGT
682 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGT
14708687 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
747 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * ** *
14708752 AG-CTGCCAGAGGGTCGGGATGCAC-AAGCGGGGGATCGACCGTGTCCCCCTCTACGTGCTATCA
812 AGCCGGCCAGAGGGGCGGGATGC-CTAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCG
* * * * * *
14708815 ATCCTGCTGTCACAAGCCTTGATCCGATCT
876 ATCCTGCTGCCGCAACCCTCGGTCCGGTCT
* *
14708845 GATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAA-TCGACAAAACGAGCGG-GG-GGGCG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCGGAGGCGGGCG
* * * *
14708907 AGCGGGCGGGCATTACGTCGGCCAGAGAGACGGGA-GACGCAAGTCGTGGATCGACAGGGTGGTA
65 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
14708971 GGTGGGTTGAGGCACATCTTCATATTT-TTTCATGCCAATGCCATTTTTATGGCTTGTAAATTAA
129 GGTGGGTTTAGGCACATCTTCATATTTCTAT-GTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * * *
14709035 TACAATAGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTCTGAC
193 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
14709100 GA-TTTTCAAAATTTTTACGGTTCGGGATTTATTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
258 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* ** * *
14709164 ACTT-GCAGATATGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAA
323 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * * *
14709228 ATATACAAGATTTAGTGACTATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGG
388 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
14709293 GAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
453 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
14709358 TAGGGGGCCAATCTGAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACCACCCCCCAG
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCCCCCGG
* * * * *
14709423 CCCCCTCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTTCGACGATGGTG
582 CCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
** *
14709488 CCCCAGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG-TGGCCGCAACCCGT
647 CCCCAATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCC-T
* * * * *
14709552 -GGTTCGATCCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGATTGGGAATGAACTTCGTAT
710 CGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** *
14709616 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAAGATGCGTAAG
775 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCTAAG
* * *** * * * * * * * **
14709681 TCGAGGATCGGTTGGGTCCCCCTCTACGTGCTGCCAATCCTACTACTGTAACCCTCAGTGTGGTC
840 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTC
14709746 T
905 T
* *
14709747 GACCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-TA--A-C-GA--------
1 GATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGGCGGGCG
* * *
14709798 -GCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
65 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
14709862 GTGGGTTTAGGCACATCTT-ATATTTCTATGTGGCAATGCCATTTTTATTGCTTGTAAAATT-AT
130 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGT-AAATTCAT
* * *
14709925 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATATTTCATG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * *
14709990 ATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-TTTTCGGCCCTAA
259 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAA
* ** *
14710054 ACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCGAAAACTCCAA
323 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
14710119 GTTTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGG
388 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
14710184 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
453 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
14710249 TAGGGGGCCAATATAAGGGCCTAGTACCAGCAACCATCACACATCATGTGCGCACACCCCCCGGC
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * *
14710314 CCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
583 CCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * **
14710379 CCCAACT-AACAAAAATGTGGCACCAGCACATGCCTGAATCCA-CATGTGCTGCCGCAACCCTCG
648 CCCAA-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
14710442 GTTCGGTCTGATCTTTGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
712 GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14710507 CTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCAAGAGGGGCGCGATGCCTATGCC
777 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCTAAGCC
* * * ** * *
14710572 GGGGATC-AGCCGGGTCCCCCTCTGTGTACTGCCGATCCTGCTACCATAACCCTCGGTCTGGTTT
842 GGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT
* *
14710636 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCGGGCAGGCGGGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC-GG-AGGCGGGC
* * * * * **
14710701 GGGCGAGCGGGCACTACGCCGACCAGAAAGACGGGATGCGTAAGCTATGGATCGATAGGGTGGTA
64 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
14710766 GGTAGGTTTAGTCACCTCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
129 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
14710831 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* ** * *
14710896 ATTTTTGAAACTTTTTGCGGTTAAGGATTTTTTCAAATTTTTTCGGAA-GACGTTTTGTCCCCAA
259 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAA
* * * ** *
14710960 ACTCGATAGACGTGATCCTTGTATTTTTCTTCTCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
323 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
14711025 ATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGG
388 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
14711090 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
453 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
14711146 ATTAAAATTT
Statistics
Matches: 5841, Mismatches: 766, Indels: 352
0.84 0.11 0.05
Matches are distributed among these distances:
866 6 0.00
867 37 0.01
868 5 0.00
869 145 0.02
870 32 0.01
871 3 0.00
872 1 0.00
873 4 0.00
874 2 0.00
878 52 0.01
879 2 0.00
880 192 0.03
881 54 0.01
882 219 0.04
883 2 0.00
885 1 0.00
887 3 0.00
888 247 0.04
889 567 0.10
890 240 0.04
891 369 0.06
892 122 0.02
893 7 0.00
894 3 0.00
895 4 0.00
896 4 0.00
897 249 0.04
898 199 0.03
899 329 0.06
900 236 0.04
901 413 0.07
902 244 0.04
903 378 0.06
904 210 0.04
905 128 0.02
906 376 0.06
907 65 0.01
908 111 0.02
909 192 0.03
910 32 0.01
911 58 0.01
912 7 0.00
914 9 0.00
915 2 0.00
916 5 0.00
917 1 0.00
918 2 0.00
920 2 0.00
921 116 0.02
922 153 0.03
923 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (905 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGGCGGGCGG
GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
AATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCTAAGCCGGGG
ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT
Found at i:14711366 original size:221 final size:220
Alignment explanation
Indices: 14710930--14711366 Score: 669
Period size: 220 Copynumber: 2.0 Consensus size: 220
14710920 GGATTTTTTC
* * * * * *
14710930 AAATTTTTTCGGAAGACGTTTTGTCCCCAAACTCGATAGACGTGATCCTTGTATTTTTCTTCTCA
1 AAATTTTTTCGGAAGACATTTTGGCCCCAAACTCGATAGACATAATCCTTGCATTTTTCTTCGCA
14710995 TGCAAAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
66 TGCAAAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
14711060 CCCCATTTCAGACAGTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
131 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
14711125 GGGTGTGAGTTCTCGAGGTTTATTA
196 GGGTGTGAGTTCTCGAGGTTTATTA
* * * *
14711150 AAATTTTTTCGGAAGGA-ATTTTGGCCCCAAACTTGGTAGACATAATCCTTGCATTTTTGTTGGC
1 AAATTTTTTCGGAA-GACATTTTGGCCCCAAACTCGATAGACATAATCCTTGCATTTTTCTTCGC
* * * * * * *
14711214 ATGCACAAAAAAATTCAGCTAAAAATTGGAAGTGTACAAGATTTTGTGACTATTTGAACAAAGTT
65 ATGCAAAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
14711279 TCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
130 TCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
*
14711344 GGGGGTGTGAGTTCTTGAGGTTT
194 GGGGGTGTGAGTTCTCGAGGTTT
14711367 GATGAGGGAT
Statistics
Matches: 195, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
220 115 0.59
221 80 0.41
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (220 bp):
AAATTTTTTCGGAAGACATTTTGGCCCCAAACTCGATAGACATAATCCTTGCATTTTTCTTCGCA
TGCAAAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTATTA
Found at i:14711598 original size:26 final size:26
Alignment explanation
Indices: 14711569--14711621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14711559 CCGGTCCAAT
14711569 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14711595 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14711621 C
1 C
14711622 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14712515 original size:26 final size:26
Alignment explanation
Indices: 14712486--14712538 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14712476 TCGATCCGAT
14712486 CTTAGA-TTGGGAATGAACTCCGTATG
1 CTTAGACTT-GGAATGAACTCCGTATG
14712512 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
14712538 C
1 C
14712539 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:14713417 original size:26 final size:26
Alignment explanation
Indices: 14713377--14713429 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14713367 CAGGTCTGAT
14713377 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGTGAATGAACTCCATATG
*
14713403 CTTAGACTG-GAAATGAACTCCGTATG
1 CTTAGACTGTG-AATGAACTCCATATG
14713429 C
1 C
14713430 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCATATG
Found at i:14713939 original size:891 final size:888
Alignment explanation
Indices: 14711137--14715177 Score: 4710
Period size: 891 Copynumber: 4.5 Consensus size: 888
14711127 GTGTGAGTTC
* * * * * *
14711137 TCGAGGTTTATTAAAATTTTTTC-GGAAGGAATTTTGGCCCCAAACTTGGTAGACATAATCCTTG
1 TCGAGATTTTTTAAAATTTTTTCTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
14711201 CATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTGGAAGTGTACAAGATTTTGTGACTA
66 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
14711266 TTTGAACAAAGTTTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
131 TTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
14711331 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTC
195 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
14711396 CAAGTACCAGCACGCATCGTACATCATGTGCGCAC-CCCCCAGCCCCCCCGATCGTCGGAACCCC
260 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCC
* * * * * * *
14711460 AACGTCGCCGGTCAGGTTCTCCG-GTGATGATGCCCCGACGAAGAAAAATGCAGAACCAGCACTT
325 AATGCCGTCGGTCAGGTTCTCCGCGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACAT
* *
14711524 GCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTC
390 GCCC-AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * *
14711589 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGTGTGCGGGCG
454 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
14711654 CTCAGCTGGCCAGAAGGGCGGGATGCA-CAAGCCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTA
519 CTCAGCCGGCCAGAGGGGCGGGATG-AGCAAGCCGGGGATC-ATCGGGTCCCCCTCTATGTGCTA
*
14711718 CC-ATTCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
582 CCGA-TCCTGCTGCCACAACCCTCGGTC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
14711782 TAAGCCAACAGATGAAACAAGCGGGCAGGAGGGCGGGCGGTCGGACGAGCGGGCATTACGTCGGC
645 TAAGCCAAC-GATGAAACGAGCGGGC----GGGC--G-GGT--G--GA-CGGGCA-TACGCCGGC
** *
14711847 CAGAGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCAT
696 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * * *
14711912 ATTTCTGA-GTACGAATGCCATTTTTATGACTTGTAAATTCTTTCAATGGTCCCTTAAGCCTTCA
761 ATTTCT-ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
14711976 CGTGAAGTTTCATGGCAAGATGGCTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGTGGT
825 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* *
14712040 TCGGGATTTTTTAAAATTTTTT-TGCAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
1 TCGAGATTTTTTAAAATTTTTTCTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
14712104 TATTTTTTTTGGCATGCACAAAAAAATTCAACTAAACACTCCAAGTGTACAAGATTTTGTGACCA
66 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
14712169 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
131 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
14712234 AATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCC
196 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
14712299 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCAACCCCCCTCGATCGTCGGAACC
261 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGA-CCCCC-CGATCGTCGGAACC
14712364 CCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCA
323 CCAATGCCGTCGGTCAGGTTCTCC------G--C-G-CGATGGTGCCCCGACGAAGAAAAATGCA
* * * * * *
14712429 GCACCAGCCCATGACCGAGCCCAACATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGATT
378 GCACCAGCACATG-CCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* *
14712494 GGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
442 GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
14712559 AGCGTGTGGGTGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGCCGGGGATCAGTCGGGT-CCCC
507 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCA-TCGGGTCCCCC
* * * *
14712623 T-T-TGCATGCTATCGATCCTGCTGCCACAACCCTCGATTCGATCCGATCTGAGACTGGGAATGA
571 TCTATG--TGCTACCGATCCTGCTGCCACAACCCTCG-GTCGATCTGATCTTAGACTGGGAATGA
** * ** * ** * *
14712686 ACTCCACATGCCTAAGCCAACCGACGAAACGAGCGGGCGAACAGGCAGCCGGGCACTACGTCGGC
633 ACTCCGTATGCCTAAGCCAA-CGATGAAACGAGCGGGCGGGCGGGTGGACGGGCA-TACGCCGGC
* * ** *
14712751 CAGAAAGACAGGATGCGCAAGCCGTGGATAAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTAT
696 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
14712816 ATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAA
761 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * ** * *
14712881 TTTACGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGT
826 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* *
14712944 TC-AGGATTTTTTTAAAATTTTTT-TGAAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
1 TCGA-GA-TTTTTTAAAATTTTTTCTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
14713007 TGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
64 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
14713072 AATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
129 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
14713137 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
194 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
14713202 CCAAGTACCAGCACCCATTGCACATCACT-TGTGCACACCCCCCGACCCCCCGATCGTCGGAACC
259 CCAAGTACCAGCACCCATCGCACATCA-TGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACC
* * *
14713266 CCAATACCG-CTGGTCAGGTTCTCCG-GCGATGGTGCCACGACGAAGAAAAATGCTGCACCAGCA
323 CCAATGCCGTC-GGTCAGGTTCTCCGCGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCA
* * * * * *
14713329 CCTGCCCATGCCTAGCATGTGCTACCGCAACCCTCGGTCAGGTCTGATCTTAGACTGTGAATGAA
387 CATGCCCA-GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * *
14713394 CTCCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGA
451 CTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * ** *
14713459 ACACTCAGCCAGACAGAGGGGCGGGATGAGCAAGTCGGGGATCGAAAGGGACCCCCTCTATGTGC
516 GCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATC-ATCGGGTCCCCCTCTATGTGC
* ** * *
14713524 TACCGATCCTGCTACTGCAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
580 TACCGATCCTGCTGCCACAACCCTCGGTC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGC
*
14713589 CTAAGCCAACTGATGAAACGAGCGGGCGGGCGGGTGGACGGGCAGTACACCGGCCAGAGAGACGG
644 CTAAGCCAAC-GATGAAACGAGCGGGCGGGCGGGTGGACGGGCA-TACGCCGGCCAGAGAGACGG
* * *
14713654 GATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTCTACATG
707 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
* *
14713719 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTTACGTGAAGTTTCA
772 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
14713784 TGGCAAGACGACTAATTTTCTATTTTTCATC-ATTTTTGAAACTTTTTGCGGT
837 TGGCAAGACGACTCATTTTCTATTTTTCA-CGATTTTTGAAACTTTTTGCGGT
* * * * *
14713836 TCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGTCCCCAAAGTTGGTAGATGTGATCCTTT
1 TCGAGATTTTTTAAAATTTTTTCTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
14713900 TATTTTTTTTGGCATGCACAAAAAAATTCA-ATGAAAAACTTGAAGTGTACAAGATTTTGTGACC
66 TATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACC
*
14713964 ATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
130 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* ** * * *
14714029 AAATGCTCTTGAAGGGGGTGTGAGTTCTCAAGGTTTCATAAGGGATAGGGGGCCAATAGAAGGGC
195 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
14714094 CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCTCCGATCGTTGGAACCC
260 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCC-CCGATCGTCGGAACCC
* * ** * * *
14714159 CAATGTCGTCGGTGAACTTCTCGGGCGATGCTTCGATGATGGTGACCCGACGAAGAAAAATGCGG
324 CAATGCCGTCGGTCAGGTTCTC---C---G---CG-CGATGGTGCCCCGACGAAGAAAAATGCAG
* * * * * *
14714224 CACCAGCACATGATCGAGCCTAGAATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTG
379 CACCAGCACATG-CCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
14714289 GGAATAAACTCCATATGCTTAGACTGGGTATGAAATCCGTATGCCTAAGTCAACCCACGAAACTG
443 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-G
* * * * * *
14714354 -GCGT--GGGCGCTCAGTCTG--AGAGGTGCGGGATGCGTAA--CGGGGATCACCGGGTTCCCCC
507 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCATCGGG-TCCCCC
* * * * * ** * *
14714412 TCTACGT--TGGCCGATCTTGCTG-CGCAACCCTCAGTCCTCGATCCACATTTATAGA-TCGGAA
571 TCTATGTGCT-ACCGATCCTGCTGCCACAACCCTC-G--GTCGAT-CTGATCT-TAGACTGGGAA
*** *
14714473 TGAACT-CGTATGCCTAAGCCAACGATGAAAC-AGCGGGCGGGCCACT--A--TG-AT-C-CCGA
630 TGAACTCCGTATGCCTAAGCCAACGATGAAACGAGCGGGCGGGCGGGTGGACGGGCATACGCCG-
* * * * *
14714529 GCCAGATAAACGGGCATGCG--AGCCGT-GAT-GA-A--GT-GCACGT-GGTTTAGGTACATCTT
694 GCCAGAGAGACGGG-ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * * * *
14714585 CATATTTC-GCATG-CAATTCCATTTGTATGGCTTGTAAATTCATAC-TTGGTCCCATAAGCATT
758 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * *
14714647 CACGTG-A---CCA-GGCCAAGATTGACTCA--TTCTA-TTTTCATGATTTTCGAAAGTTTTTGC
823 CACGTGAAGTTTCATGG-CAAGA-CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
14714704 GGT
886 GGT
* * * * *
14714707 TC-AAATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCGCCGAACTTGGTAGAAGTGATCCTTT
1 TCGAGATTTTTTAAAATTTTTTCTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
14714770 TATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCA
66 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
** * * *
14714835 TTCCAAAAAAGTGTCCCCATTACAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCA
131 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
14714900 AATGCACTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCC
196 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
14714965 AAATACTAGCACCCATTGCACATCATGTGCGCACACCACCCCCGACCCCCCCGATCATCGAAACC
261 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGA-CCCCCCGATCGTCGGAACC
* ** * *
14715030 CCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGGTGAAGAAAAATACGG
323 CCAATGCCGTCGGTCAGGTTCT-C--C---G---CGCGATGGTGCCCCGACGAAGAAAAATGCAG
** * *
14715095 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGGTCTGATCTTAGACTA
379 CACCAGCACATGCCC-AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
14715160 GGAATGAACTCCGTATGC
443 GGAATGAACTCCATATGC
14715178 CTAAGCGAAC
Statistics
Matches: 2726, Mismatches: 337, Indels: 182
0.84 0.10 0.06
Matches are distributed among these distances:
869 1 0.00
870 260 0.10
871 122 0.04
872 53 0.02
873 12 0.00
874 5 0.00
876 1 0.00
877 18 0.01
878 30 0.01
879 4 0.00
880 22 0.01
881 4 0.00
882 2 0.00
884 1 0.00
885 2 0.00
886 3 0.00
887 8 0.00
888 13 0.00
889 5 0.00
890 6 0.00
891 455 0.17
892 309 0.11
893 5 0.00
894 2 0.00
895 23 0.01
896 24 0.01
897 38 0.01
898 18 0.01
899 20 0.01
901 10 0.00
902 176 0.06
903 278 0.10
904 191 0.07
905 282 0.10
906 36 0.01
909 2 0.00
912 3 0.00
914 2 0.00
915 1 0.00
916 85 0.03
917 192 0.07
918 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
TCGAGATTTTTTAAAATTTTTTCTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCA
ATGCCGTCGGTCAGGTTCTCCGCGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATG
CCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCA
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCATCGGGTCCCCCTCTATGTGCTACCGA
TCCTGCTGCCACAACCCTCGGTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACGATGAAACGAGCGGGCGGGCGGGTGGACGGGCATACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
Found at i:14714331 original size:26 final size:25
Alignment explanation
Indices: 14714273--14714332 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
14714263 CCTCGGTCCG
14714273 ATCCG-AT-CTTAGACTGGGAATAA
1 ATCCGTATGCTTAGACTGGGAATAA
* *
14714296 ACTCCATATGCTTAGACTGGGTATGAA
1 A-TCCGTATGCTTAGACTGGGAAT-AA
14714323 ATCCGTATGC
1 ATCCGTATGC
14714333 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 1 0.03
24 3 0.10
25 2 0.07
26 21 0.70
27 3 0.10
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
ATCCGTATGCTTAGACTGGGAATAA
Found at i:14715904 original size:26 final size:26
Alignment explanation
Indices: 14715866--14715918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14715856 CTGATCTGAT
*
14715866 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14715892 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
14715918 C
1 C
14715919 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14716635 original size:26 final size:26
Alignment explanation
Indices: 14716606--14716658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14716596 CCAGTCCGAT
*
14716606 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14716632 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14716658 C
1 C
14716659 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14718040 original size:881 final size:878
Alignment explanation
Indices: 14715892--14720615 Score: 5168
Period size: 881 Copynumber: 5.3 Consensus size: 878
14715882 ACTCCATATG
* ** * * *
14715892 CTTAGACTAGGAATGAACTCTATATGCCTAAGCCAACTGACCAAACGAGCAGGC---GGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGCGGGC
* * * ** *
14715954 GGGCACTACGCCGACCAGAGAGACTGGATGCGCAAGCC-ATGAGTCGATAGGGTGGTATGTGGGT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGCGGA-TCGATAGGGTGGTAGGTGGGT
* ** * *
14716018 TTAGGCGCATCTT-ATATTTCTGCGTGCCAATGCCATTTTTATTACCTGTAAATTTATACAATGG
130 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
14716082 TCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
* * *
14716147 AAACCTTTTACGGTT-TGAGATTTTTTAAAATTTTTTTGGAAGGA--TTTGCAGCCCCAAACTTG
260 AAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTG--GCCCCAAACTTG
* * * *
14716209 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACCAAAAAATTCAGCTAAAAACTCGAAGTGAA
322 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
14716274 AAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTGGCAGC
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGC
* *
14716338 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTGGAGGTTTGATGAGGGATAGG
451 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
14716403 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAGCATGTGCGCACACCCCCCCGGCCCC
516 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * *
14716468 CCCGACCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
581 CCCGATCATCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * *
14716533 GACGAAGAAAAATGAGGCACCAGCACATG-CTCGAGCCTAGAATGTGCT-ATCGCAACCCTCGGT
646 GACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCTCGCAACCCTCGGT
* * *
14716596 CCAGTCCGATCTTAGACTGTGAATGAACTCCGTATGCTTAGAGTGGGAATGAACTCCGTATGCCT
710 CCAGTCTGATCTTAGACTG-GAATGAACTCCGTATGCCTA-A----G--TCAA--CC--A-----
* * * * *
14716661 AAGTCAACCGAGCGTACGAGG-GCTCAGCCGGCCAGAGGGGCGGGACGCACAAGCCGAGGATCGT
758 ACG--AAACGAGCGTGCG-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGA
* ** * * * * *
14716725 CCGAGCCCCCCTCTGTGTGCTGCCGATCCTGCTACCGCAACCCCCAATGTGA-TCCGAT
820 CCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCTCATTCTGAT
* * * * * *
14716783 CTTATATTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAAACGTGCGGGAGGGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-GGGCGGG
* * * * *
14716848 CGGGCACTATGCCGGCCAGAGAGACGGGATGCT-CAACCCGTGGATCGATAGGGTGGTAGGTAGC
65 CGGGCACTACGCCGGCCAGAGAGACGGGATG-TGCAAGCCGCGGATCGATAGGGTGGTAGGTGGG
* ** *
14716912 TTTAGGCACATCTTTATATTTCTATGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
14716977 GTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTT
* * *
14717042 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGT
259 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
14717107 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAGGTGTAC
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTAC
14717171 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
14717236 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGT
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14717301 GCCAATATAAGAGCCAAGTACCGGCACCCATCGCACATCATGTACGCACACCGCCTCCCCGGCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CC-CCCCGGCCC
* * * *
14717366 CCTCGATCACCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGTCGATGCTCCGACGGTGGTGCCC
580 CCCCGATCATCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* *
14717431 CGACGAAGAAAAATGCGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTGCT-GTAACCCTCAG
645 CGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCTCGCAACCCTCGG
* *
14717494 TCCAGTCTGATCTTAGACTAGGAATGAACACCGTATGCCTAAGTCAACCAACGAAATGAGCGTGC
709 TCCAGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGC
* * * * * ** **
14717559 GGGCACGCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG-GGAATC-AGCTGAGTCCTTCTCTGT
773 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGG-ATCGA-CCGAGTCCCCCTCTAC
* **
14717622 GTGCTGCCGATCCTACTGTCGCAACCCTCGAT-TCATTCTGAT
836 GTGCTGCCGATCCTGCTACCGCAACCCTCGATCTCATTCTGAT
* *
14717664 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGTGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-GGGCGGG
* * * *
14717729 TGGGCACTACGCCGGCCAG-GCAGACGGGATGTGTAGGCCACGGATCGATAGGGTGGTAGGTGGG
65 CGGGCACTACGCCGGCCAGAG-AGACGGGATGTGCAAGCCGCGGATCGATAGGGTGGTAGGTGGG
* *
14717793 TTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCA-TTTTATGGCTCGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
14717857 GTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTT
*
14717922 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGT
259 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
14717987 AGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
324 AGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14718052 AAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTACTGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
14718117 ACCTGTAAAATCTCAAATGCTATTAAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * *
14718182 GCCAACATAAGGGCCAAGTACCAGCAACCATCACACATCATGTGCGCACA-CCCCCTGGCCCCCT
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * *
14718246 CGATCATCGAAA-CCTCAATGCTGTCGGTCAGGTTCTTCGACGATGCTCCGATGATGGTGCCCCG
583 CGATCATCGAAACCCT-AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
*
14718310 ACGAAGAAAAATGCGGCACCAGCACATGCCTTAGCCCAGCATGTGCTGC-CGCAACCCTCGGTCC
647 ACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTCGCAACCCTCGGTCC
* * * *
14718374 GGTCTAATCTTAGGCTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
712 AGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGC
* * * * * * *
14718439 GCTCAACCGGCCAGAGGGGTGGGATGCACAAGTCGGGGATTGACCG-GGCCCCCTCTACGTGCTA
777 GCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGAGTCCCCCTCTACGTGCTG
* ** *
14718503 CCGATCCTGCTACCGCAACCCTCGGTCTGGTTC-AAT
842 CCGATCCTGCTACCGCAACCCTCGATCTCATTCTGAT
* * * * * * *
14718539 CTGAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGGTGGGCGGACAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-GGGCGGG
* * * *
14718604 CGGGCACTATGTCGGCCAGAGAGATGGGAT-TCGCAAGCCGTGGATCGATAGGGTGGT-GGATGG
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGT-GCAAGCCGCGGATCGATAGGGTGGTAGG-TGG
* ** *
14718667 CTTTAGGCACATCTTCATATTTCTGTATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAAT
128 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
14718732 GGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGAAGACTCGTTTTTTATTTTTCACGTTTTT
193 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
* ** * *
14718797 TGAAAACTTTTTGCAATTCAGGATTTTTTAAAATTTTTTCGAAAGTAGTTTTGGCCCCAAACTTG
258 TG-AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * * *
14718862 CTAGAAGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGGTAAAAACTTGAAGTGTG
322 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
14718927 CAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
14718992 AACCTGTAAAATCTCAAGTGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
14719056 GGCCAATATAAGGGCCAAGTGCCAGCACCCATTGCACATCATGTGCACACA-CCCCCCGGCCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * **
14719120 CCGATC-GCTAGAACCCTAATGCCGCCGGTCGGGTTCTTCGACGATGCTCCGGTGATGGTGCCCC
582 CCGATCATCGA-AACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
** **
14719184 GACGAAGAAAAATATGGCACCAGCACATGCCTGAGCCCAGTGTGTGCTG-TCGCAACGCTCGGTC
646 GACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTCGCAAC-C-C--T-
14719248 CGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
706 CGG-TC---C----A----G--T---CT--G-AT-CTTAGACT-GGAATGAACTCCGTATGCCTA
* * * * *
14719313 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGTCGAG
749 AGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAG
** * * * *** * **
14719378 GATCGGTCGGGTCCCCCTCTACATGCTGTCGATCCTGCTGTGGCAACCCTCGGTCT-GGTCTGAT
814 GATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCTCATTCTGAT
* * *
14719442 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAATCGACGAAACGA----GC---GGGC--GC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGCGGGC
* * * *
14719498 --GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGCGGATCGATAGGGTGGTAGGTGTGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTT
* *
14719561 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
14719626 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
* ** *
14719691 AACTTTTCACGGTTC-GAGATTTTTTAAAATTTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTT
261 AACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
14719755 GACGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * *
14719820 GATTTTGTGACCATTAGAAAAAAATGTCCCAATTTTAGACACTTTAATGGCTACTTAGGCCAACA
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC-T-GG-CAGCA
* *
14719885 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTTATTGAGGGATAGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGG
*
14719950 GGGCCCAATATTAAGGGCCAGAGTTACC-GCACCCATCGCACATCCATGATGCGCACACCCCCTC
516 GGG-CCAATA-TAAGGGCCA-AG-TACCAGCACCCATCGCACAT-CATG-TGCGCACACCCCCCC
** * * * * * * *
14720014 TTCCCCCCCGATC-GCCAGAACCC-CATGCCGCTTGGTAAGGCTAT-C--CG--G--CCG--GAT
575 GGCCCCCCCGATCATCGA-AACCCTAATGCCGC-CGGTCAGGTTCTCCGACGATGCTCCGACGA-
* * * *
14720068 TGGTGCCCCCGGCGAGGAAAAAAAATTTTTGGGGTGGGGGGGACCAACCGACACATTGCGC-GAA
637 TGGTG--CCC--CGACGAAGAAAAA---------T--GCGGCACC-A--G-CACA-TGC-CTG-A
* *
14720132 TCCAAGCATGTGCTGGC-CGCAACCCTCGTCTTGGTCCGATCTTAGAGTGGGAAAGTCAACTCCG
680 GCCCAGCATGTGCT-GCTCGCAA-CC-C-TC--GGT-C---C------------AGT---CT--G
* * ** * ** *
14720196 TATGCTTAGACTGGGAATGAACTTCGTGTGCCTAAGTCAACCCTCGAAACAAGCGTGTTGGCACT
718 -AT-CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCT
* * *** * * * * * *
14720261 CTGCTGGCCAGAGGGGCGGGATGTGTAAGCCGGGGATCAACCGGGCCCCCCTCTATGTGCTACCG
780 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGAGTCCCCCTCTACGTGCTGCCG
* * ** *
14720326 ATCCTGCTGCCACAACCCTTAATC-CGGTT-TGAT
845 ATCCTGCTACCGCAACCCTCGATCTC-ATTCTGAT
* * *** *
14720359 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAATTTGCAGGC---GGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGCGGGC
** * *
14720421 AAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
14720486 TGGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGATTGAAAATTCATAAAATGGT
131 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
14720551 CCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
14720616 CATCTTCATA
Statistics
Matches: 3309, Mismatches: 393, Indels: 228
0.84 0.10 0.06
Matches are distributed among these distances:
874 5 0.00
875 363 0.11
876 292 0.09
877 224 0.07
878 4 0.00
879 1 0.00
880 191 0.06
881 424 0.13
882 2 0.00
883 2 0.00
884 1 0.00
888 1 0.00
889 1 0.00
890 162 0.05
891 216 0.07
892 10 0.00
893 38 0.01
894 27 0.01
895 90 0.03
896 388 0.12
897 27 0.01
898 25 0.01
899 165 0.05
900 19 0.01
901 39 0.01
902 89 0.03
903 82 0.02
906 1 0.00
908 5 0.00
909 1 0.00
911 1 0.00
912 4 0.00
913 5 0.00
914 15 0.00
915 16 0.00
916 1 0.00
917 179 0.05
918 2 0.00
919 1 0.00
921 6 0.00
923 4 0.00
925 180 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (878 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
TCATCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTCGCAACCCTCGGTCCAGTC
TGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGAGTCCCCCTCTACGTGCTGCCGA
TCCTGCTACCGCAACCCTCGATCTCATTCTGAT
Found at i:14719286 original size:26 final size:26
Alignment explanation
Indices: 14719257--14719309 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14719247 CCGGTTCGAT
14719257 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14719283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14719309 C
1 C
14719310 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14720711 original size:124 final size:124
Alignment explanation
Indices: 14720491--14720739 Score: 417
Period size: 124 Copynumber: 2.0 Consensus size: 124
14720481 GGGTTTGGGC
**
14720491 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGATTGAAAATTCATAAAATGGTCCTTT
1 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGAAAATTCATAAAATGGTCCTTT
* *
14720556 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
66 AAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
14720615 ACATCTTCATATTTTTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTT
1 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGAAAATTCATAAAATGGTCCTTT
14720680 AAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
66 AAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
14720739 A
1 A
14720740 AACTTTTTAC
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
124 116 1.00
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (124 bp):
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGAAAATTCATAAAATGGTCCTTT
AAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
Found at i:14721229 original size:26 final size:26
Alignment explanation
Indices: 14721200--14721252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14721190 CTGGTCCGAT
*
14721200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14721226 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14721252 C
1 C
14721253 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14722851 original size:26 final size:26
Alignment explanation
Indices: 14722815--14722867 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14722805 TTGAATCGAT
*
14722815 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14722841 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14722867 C
1 C
14722868 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14724243 original size:889 final size:894
Alignment explanation
Indices: 14722072--14724462 Score: 3370
Period size: 901 Copynumber: 2.7 Consensus size: 894
14722062 CATGTGCTGT
* * * * * * *
14722072 CGCAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCGAAGTCAACCGACG
1 CGCAACCCTCAATTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14722137 GAACGAGCAAACGGGCGGACAGGTGGGCACTACGTCAGCCAGAGAGACGGGATGTGCAAGCCGTG
66 AAACGAG-----TGG-GG-CA----GGCACTACATCGGCCAGAGAGACGGGATGTGCAAGCCGTG
* * *
14722202 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACAGGCCAATGCCATTTTTA
120 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
14722267 TGGCTTGTAAATTGATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCG
185 AGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCG
** * *
14722332 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
250 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAG
* * * *
14722397 GCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAAATC
315 GAGTTTTGGCTCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATC
14722462 AGCTAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
380 AGCTAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
14722527 TTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACTCG
445 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
14722592 AGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
510 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
14722657 CGCACACCCCCCCTGTCCCCCTCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGATGA
575 CGCACACCCCCCCTGTCCCCCTCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGACGA
* * * * * *
14722722 TGCTCCGGCGATGGTGTCCCAACGTAGAAAAATGTGGCACCAGCACATGCCCGGGCCCTACTTGT
640 TGCTCCGACGATGGTGCCCCAACGTAGAAAAATGCGACACCAGCACATGCCAGGGCCCTACGTGT
** *
14722787 GCTACCGCAACCCTCGATTTGAATCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGG
705 GCTACCGCAACCCTCGATCAGAATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * ** * *
14722852 AATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
770 AATGAACTCCTTATACCTAAGTCAACCCACGAAACGAAAGTGCGGGCGCTAAGCCGACCAGAGGG
* * * * *
14722917 GCGAGATGCGCAAGCCAGGGATCGACTGGGTCCCCCTCTGTGTGCTGCCAATCCTATTAC
835 GCGAGATGCGCAAGCCAGGGATCGACTCGATCCCCATCTATGTGCTACCAATCCTATTAC
* ** *
14722977 CGTAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCAATTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
14723042 AAACGAGTGGGCGGGCGGGCAGGCACTACATCGGCCAGAGAGACGGGATGTACAAGTCATGGATC
66 AAACGAGT------G-GGGCAGGCACTACATCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATC
* **
14723107 GATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAAGGC
124 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGC
* * * * *
14723172 TTGCAAATTCATACAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTT
189 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTT
* * * * * *
14723237 CTATTTCTCACAATTTTTGAAACTTTTTGTGGTTTGTGATTTTTTAAAATTTTTTCGGAAGGAGT
254 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
* *
14723302 TTTGG-TCCCAAACATGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGC
319 TTTGGCT-CCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGC
* *
14723366 TAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAATTT
383 TAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
14723431 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
448 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
** * *
14723496 TTTGATGAGGGATAACGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCAC
513 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
14723561 ACACCCCCCC-GTCCCTCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGC
578 ACACCCCCCCTGTCCCCCTCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGACGATGC
* *
14723625 TCCGACGATGGTGCCCCGACGTAGAAAAATGCGACACCAGCACATGCTAGGGCCC-AGCGTGTGC
643 TCCGACGATGGTGCCCCAACGTAGAAAAATGCGACACCAGCACATGCCAGGGCCCTA-CGTGTGC
* * * * *
14723689 TGCCGCAACCGTCGGTCAGATTTGATCTTAGACT-GGAATGAACTCC-TATGCTTAGACTGGGAA
707 TACCGCAACCCTCGATCAGAATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
14723752 TGAACT-CTGTATACCTAAGTCAACCCACGAAACGAAAGTGCGGGTGCTAAGCCGACCATAGGGG
772 TGAACTCCT-TATACCTAAGTCAACCCACGAAACGAAAGTGCGGGCGCTAAGCCGACCAGAGGGG
* *
14723816 C-AGGATGCGCAAGCCAGGGATCGA-TCGATCCCCATCTATGTGCTACCAATCCTCTTGC
836 CGA-GATGCGCAAGCCAGGGATCGACTCGATCCCCATCTATGTGCTACCAATCCTATTAC
**
14723874 CGCAACTTTCAA-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CGCAACCCTCAATTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
14723938 GAAACGAGT-GGGCAGGCACTAC-GCTGGCCAAAGAGACGGGATGCGCAAGCCGTGTATCGATAG
65 GAAACGAGTGGGGCAGGCACTACATC-GGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAG
* *
14724001 GGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTACGGCTTGTA
129 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGCTTGTA
14724066 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATT
194 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATT
*
14724131 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAATGAGTTTTGG
259 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG
* * * * * * *
14724196 CTCCAAGCATGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAACATTCAGCAAAAAA
324 CTCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAACAA
*
14724261 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGC
389 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
14724326 TACTGGCAGCAAACGCTGTAAAAATTCTCAAATGCTCTTTAAGGGGG-GTGGAGTTCTC-AGGTT
454 TACTGGCAGCAAAC-CTGT-AAAA-TCTCAAATGCTCTTTAAGGGGGTGT-GAGTTCTCGAGGTT
* * * *
14724389 TGATGA-GGATAGGGGGGCCAATATGGAGGACCAAGTAACCAACCCCCATCGCACATTCATGTGC
515 TGATGAGGGATA-GGGGGCCAATAT-AAGGGCCAAGT-ACCAGCACCCATCGCACA-TCATGTGC
14724453 GCACACCCCC
576 GCACACCCCC
14724463 ATTCATCGGC
Statistics
Matches: 1323, Mismatches: 141, Indels: 55
0.87 0.09 0.04
Matches are distributed among these distances:
888 1 0.00
889 354 0.27
890 9 0.01
891 27 0.02
892 39 0.03
893 15 0.01
894 17 0.01
896 2 0.00
897 94 0.07
898 92 0.07
899 13 0.01
900 131 0.10
901 461 0.35
905 64 0.05
906 3 0.00
907 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (894 bp):
CGCAACCCTCAATTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGTGGGGCAGGCACTACATCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTT
TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCT
CCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAACAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CCTGTCCCCCTCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGACGATGCTCCGACGA
TGGTGCCCCAACGTAGAAAAATGCGACACCAGCACATGCCAGGGCCCTACGTGTGCTACCGCAAC
CCTCGATCAGAATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCT
TATACCTAAGTCAACCCACGAAACGAAAGTGCGGGCGCTAAGCCGACCAGAGGGGCGAGATGCGC
AAGCCAGGGATCGACTCGATCCCCATCTATGTGCTACCAATCCTATTAC
Found at i:14725555 original size:707 final size:702
Alignment explanation
Indices: 14723889--14726030 Score: 2862
Period size: 697 Copynumber: 3.0 Consensus size: 702
14723879 CTTTCAATCT
* * * *
14723889 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCAGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGG
* * * * *
14723954 CACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTTG
66 CACTTCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-GGGTGGTAGGTGGGTTTAG
*
14724019 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCC
130 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
14724084 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCACGATTTTTGAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
14724149 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAT-GAGTTTTGGCTCCAAGCATGGTAGAC
260 TTTTTGCGGTTC-GGATTTTTTAAAATTTTTTTGG-ATGGAGTTTTGGCTCCAAACTTGGTAGAC
* * *
14724213 GTGATCCTTGTATTTTTTTTGGCGTGCACAAAAACATTCAGCAAAAAACTCGAAGTGTACAAGAT
323 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
14724278 TTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACGCT
388 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA-GCT
*
14724343 GTAAAAATTCTCAAATGCTCTTTAAGGGGG-GTGGAGTTC-TCAGGTTTGATGA-GGATAGGGGG
452 GT-AAAA-TCTCAAATGCTCTTTAAGGGGGTGT-GAGTTCTTAAGGTTTGATGAGGGATA-GGGG
* * * *
14724405 GCCAATATGGAGGACCAAGTAACCAACCCCCATCGCACATTCATGTGCGCACACCCCCAT-----
513 GCCAATAT-AAGGACCAAGT-ACCAGCACCCATCGCACA-TCATGTGCGCACACCCCCCTCGGCC
* * * *
14724465 --TC-ATCG--GCAACCCCAAGGCCGTCGGTCA-G-TCT-C---G--G--C-G-AATGTGCCCCG
575 CCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCGGTAATGTGCCCCG
* * * * ** **
14724513 AGAAGAAAAAT-ACGCTCCCAGCACAT-CCAC-AACCCA-CATGTGCTACTGCAACCCTCCTTTT
640 AGAAGAAAAATGAAGC-ACCAGCACATGCC-CGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
* *
14724574 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGAGGA
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-T--GA-G-
* * * * *
14724639 CAGGCGGGTGTGCACTAT-GCCAGCTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGTAGG
58 C-GG-GCG-G-GCACT-TCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGT-GG
* * * *
14724703 TAGTTGGGTTTAGGCACATCTTCATAGTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
117 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
14724768 ATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
182 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** * ** * *
14724833 TAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTCCGGATGGATTTTTGGCCCCA
247 CGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCTCCA
*
14724898 AACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
311 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
14724963 AGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
376 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
14725028 GCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
441 GCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGG
* * *
14725093 ATAGGGGGCCAATATAAGGCCCAAGTACCAGCACGCATCGCACATCATGTGTGCACACCCCCCTC
506 ATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTC
14725158 GGCCCCCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCCGGTGATGCTCTGGTAATCG
571 GGCCCCCCGATCGTCGGAACCCCAATGCCAT-CGGTCAGGTTCTCCGGTGATGCTC-GGTAAT-G
* * ** * *
14725222 TGCCCCGATGAAGAGAATTGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCT
633 TGCCCCGA-GAAGAAAAATGAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCT
14725287 CGGTCC
697 CGGTCC
* * * *
14725293 AGTCCGATCTTAGACTGGGAATGAAGTCTGTATGCTTAAGCCAACCGACGAAATGAGCGGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGG
*
14725358 CACTTCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGTTAGGTGGGTTTAG
66 CACTTCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-GGGTGGTAGGTGGGTTTAG
**
14725423 GCACATCTTCATATTTCTGCATGCCAATTTCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
130 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* **
14725488 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
14725553 TTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCTCC-AACTTGGTAGATG
260 TTTTTGCGGTTCG-GATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCTCCAAACTTGGTAGACG
*
14725617 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-T
324 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
14725681 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCTGT
*
14725746 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
14725811 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCTGATCA
519 ATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCG
* *
14725874 TCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGATGCCCCGACGTAGA
584 TCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCT-CGGTAATG-TGCCCCGA-GAAGA
* * *
14725939 AAAATGCAGCACCAGCCCATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCC
646 AAAATGAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
* * * *
14725996 GGTTCGGTCTTAGATTGGGAATGAATTCCGTATGC
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14726031 TCAGACTGGG
Statistics
Matches: 1280, Mismatches: 123, Indels: 90
0.86 0.08 0.06
Matches are distributed among these distances:
685 47 0.04
686 2 0.00
688 1 0.00
691 2 0.00
692 19 0.01
693 15 0.01
694 39 0.03
695 31 0.02
696 16 0.01
697 346 0.27
699 1 0.00
700 4 0.00
701 1 0.00
702 19 0.01
703 147 0.11
704 10 0.01
705 169 0.13
706 75 0.06
707 215 0.17
708 5 0.00
709 2 0.00
710 3 0.00
711 1 0.00
712 2 0.00
713 2 0.00
714 1 0.00
715 4 0.00
716 10 0.01
717 18 0.01
718 11 0.01
719 62 0.05
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (702 bp):
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGG
CACTTCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTGCGGTTCGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCTCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGTC
GGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCGGTAATGTGCCCCGAGAAGAAAAAT
GAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
Found at i:14727702 original size:26 final size:26
Alignment explanation
Indices: 14727664--14727716 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14727654 TCAATCCGAT
*
14727664 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
14727690 CTTAGACTT-GGAATGAACTCCGTATG
1 CTTAGA-TTGGGAATGAACTCCGTATG
14727716 C
1 C
14727717 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:14728593 original size:26 final size:26
Alignment explanation
Indices: 14728554--14728606 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14728544 CAGGTCCAAT
*
14728554 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14728580 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14728606 C
1 C
14728607 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14729067 original size:892 final size:886
Alignment explanation
Indices: 14726889--14733024 Score: 7041
Period size: 892 Copynumber: 6.9 Consensus size: 886
14726879 TGATCGGTCA
* * * *
14726889 GGTCCCCTTCTGCGTGCTATCGATCCTGCTA-TCGTAACCCTCGGTCTGGTCTGATCTTAGACTG
1 GGTCCCCCTCTACGTGCTACCGATCCTGC-ACT-GCAACCCTCGGTCTGGTCTGATCTTAGACTG
* * * ** * * * * *
14726953 AGAATGAACTCCGTATGTCTTAGCCAACCAACAAAATGAGCGGGCTGGCGGACGAGCAGACACTA
64 GGAATGAACTCCGTATGCCTAAGCCAACCGTCGAAACGAGCGGGCGGGCGG--G-GCGGGCACTA
* * * *
14727018 CGTCAGCCAGAGAGACGGGATACGCAAGCTGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACA
126 CGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* ** * *
14727083 TCTTCATATTTCTGTGTGCCATTGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAG
191 TTTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
14727148 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAA-TTTTT
256 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* *
14727212 ACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATC
321 ACGGTTAGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
14727277 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAACACT-GCAAGTGTACAAGATTTTGT
386 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGT
14727341 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
450 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
14727406 TCTCAAATGCTTTTTAAGGGGAGTGTGAGTTCTTGACGTTTGATGTGGGATAGGGGGCCAATATA
515 TCTCAAATGCTCTTTAAGGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
14727471 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGACCCCCCTCGATCGTC
579 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGA-CCCCC-CGATCGTC
* *
14727536 GGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAA
641 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC-A----------ATGGTGCCCCGACGAAGAAA
* * *
14727601 AATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCA-ATCCGATC
695 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGG-TCAGGTCCGATC
* * * *
14727665 TTAGATTGGGAATGAACTCTGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAGGTCAACCCA
759 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * ** **
14727730 CGAAACGAGCTTGTGGGCGCTCAGCCGGCCAAAAGGGTAGGATGCGCAAGCCGGGGATCGGTCG
824 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGAACG
** * * * ***
14727794 GGT-CCCCTCTGTGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCACTCTGATCTTAGACTGG
1 GGTCCCCCTCTACGTGCTACCGATCCTGC-ACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* * ** *
14727858 GAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA-GCAGCAGGCGAACAGGCAGCTGGGCACTA
65 GAATGAACTCCGTATGCCTAAGCCAACCGTCGAAACG-AGCGGGCGGGC-GG-GGC-GGGCACTA
* ** **
14727921 CGTCGGCCAGAAAGACGGGATGCGCAAGCCATGGATAAATAGGGTGGTAGGTGGGTTTAGGCACA
126 CGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
14727986 TCTTT-ATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAA
191 T-TTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
** * * *
14728050 GCCTTCAATTTACGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTT
255 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * *
14728115 TACAGTTCGGGATTTTTTAAAATTTTTTTGAAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGA
320 TACGGTTAGAGATTTTTTAAAA-TTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
14728179 TCCTTCTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
384 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
14728244 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGGAAACCTGCAAA
449 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
** *
14728309 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTTAGGTTTGATGAGGGATAAGGGGCCAATATA
514 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
14728374 AGGGCCAAGTACCAGCACCCATTGCACATCACT-TGCGCACACCCCCCTGACCCCCCGATCGTCG
579 AGGGCCAAGTACCAGCACCCATCGCACATCA-TGTGCGCACACCCCCC-GACCCCCCGATCGTCG
* * *
14728438 GAACCCCAATGCCGTTGGTCAGGTTCTCCGGCAATGGTGCCTCGACGAAGAAAAATGCTGCACCA
642 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * *
14728503 GCACCTGCCC-ATGCCTAGCATGTGCTACCGCAACCCTTGGTCAGGTCCAATCTTAGACTGTGAA
707 GCACATGCCCGA-GCCCAGCATGTGCTGCCGCAACCCTTGGTCAGGTCCGATCTTAGACTGGGAA
*
14728567 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGT
771 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
** * ** * *
14728632 GCGAACGCTCAACCGGATAGAGGGGCGGGATGCGAAAGCCAGGGATCGAAAG
836 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGAACG
* *
14728684 GGTCCCCCTCTACGTGCTACCGATCCTGCAGCTGCAACCCTCGGTCGGGTCTGATCTTAGACTAG
1 GGTCCCCCTCTACGTGCTACCGATCCTGCA-CTGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
*
14728749 GAATGAACTCCGTATGCCTAAGCCAACCGTCGAAACGAGCGGGCGGGCGGGTGGACGGGCAGTAC
65 GAATGAACTCCGTATGCCTAAGCCAACCGTCGAAACGAGCGGGCGGGC-GG-GG-CGGGCACTAC
* * *
14728814 GTCGGCCAGAAAGATGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
127 GTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
14728879 TTTCATCTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGC
192 TTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * ** *
14728944 CTTTATGTGAAGTTTCGTGGCAAGACGACTAATTTTCTATTTTTCATGATTTTTGAAACTTTTTG
257 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-
* *
14729009 A-GGTTAGAGATTTTTTAAAATTTGTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATC
321 ACGGTTAGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * *
14729073 CTTGTATTTTTCTTGGCATGCCCAAAAACATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTG
386 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
14729138 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAAT
451 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
14729203 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGCGGCCAATATAAG
516 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
** * * * *
14729268 GGATAAGTACCAACACCCATCGCACACCATGTGCGCACACCACCCCAACCCCCCCGATC-ACTGG
581 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGA-CCCCCCGATCGTC-GG
* * * * *
14729332 AACCCCAATGTCACCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAA
643 AACCCCAATG---CC-GTC-GG---T-C-A-GGTTCTCCGGCAATGGTGCCCCGACGAAGAAAAA
* * *
14729397 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTTGGTCTGGTCCAATCTTA
697 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCAGGTCCGATCTTA
* * *
14729462 GACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACACCGTATGCCTAAGTCAACCCACGC
762 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
14729527 AACGAGCGTGCGGGCACTCAGCCGGCCAG-GGGGTGGGATGCGTAAGTCGAGGATC-AATCG
827 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGAA-CG
* *
14729587 GGT-CCCC-CT-C-TG----C-ATGCTGC-C-GCAACCCTCGGTTTGGTCTGATCTTAGACTGGG
1 GGTCCCCCTCTACGTGCTACCGATCCTGCACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
* *
14729641 AATGAACTCCGTATGCCTAAGGCAACCAAT-GAAACGA----GCGGGC-GGGC--G--CTACGTC
66 AATGAACTCCGTATGCCTAAGCCAACC-GTCGAAACGAGCGGGCGGGCGGGGCGGGCACTACGTC
* * * * * * *
14729696 GGCCAAAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACCCATCTT
130 GGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTT
*
14729761 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
195 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
** * * * **
14729826 CACGTGAAGTTTCATGATAA-AGCGACTTGTTCTCTATTTTTTACGATTTTCAAAAC-TTTTACG
260 CACGTGAAGTTTCATGGCAAGA-CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * *
14729889 GTTCA-AGATTTTTTAAAATTTTTT-AGGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCC
324 GTT-AGAGATTTTTTAAAATTTTTTCA-AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
14729952 TTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTAGAAGTGTGCAAGATTTTGTGA
387 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
14730017 CCATTTGAAAAAAGTGTCCCCATCTT-AGACACTTTAGTGCCTACTGGCAGCAAACCTGTAAAAT
452 CCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
14730081 CTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGATTTCATAAGGGATAGGGGGCCAATATAAG
516 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
14730146 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTACCCGGCCCCCCCGATCGTC
581 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC--CCC-GACCCCCCGATCGTC
* * **
14730211 GGAACCCCAATGCCTTCGGTC-GGTTCTCCGACGATGCTCCGATGATGGTGTCCCGGTGAAGAAA
641 GGAACCCCAATGCCGTCGGTCAGGTTCT-C--CG--G---C-A--ATGGTGCCCCGACGAAGAAA
* * * * *
14730275 AATACGGCACCAGCATATGCCCGAGCCCAGCATGTGCTACCGTAACCCTTGATTC-GGTCCGATC
695 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG-GTCAGGTCCGATC
* *
14730339 TTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA
759 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * **
14730404 TGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATTGGTCG
824 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGAACG
* * ** * * * *
14730468 GGTCCCCCTCTATGTGCTACTGATATTGCTACTACAACCCTTGGTCGGGTCTGATCTTAGACTAG
1 GGTCCCCCTCTACGTGCTACCGATCCTGC-ACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* * * * * * *
14730533 GAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC-GGGTGGGCATTAAGCC
65 GAATGAACTCCGTATGCCTAAGCCAACCGTCGAAACGAGCGGGCGGGCGGGGCGGGCACTACGTC
* *
14730597 GGCCAGAGAGACGGGATGTGCAAG-TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
130 GGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTT
* * * *
14730661 TCATATTTCTATGTGCCAATGCAATTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTAGGCCT
194 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
14730726 TCACGGGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACA
259 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * *
14730791 GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTT
324 GTTAGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
14730856 GTACTTTTGTTGGCATGGACAGAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
389 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
14730921 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGTAGCAAAGCTGTAAAATCTC
454 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
14730986 AAATGCTCTTTAAGGGGGTGAGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
519 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * * *
14731051 CAAGTACCCGCACCCATCGCACATCATGTGTAAGCAC-CCCCCCGGCCCCCCCGATCGCCAGAAA
584 CAAGTACCAGCACCCATCGCACATCATGTG--CGCACACCCCCC-GACCCCCCGATCGTCGGAAC
* * *
14731115 CCCAATGCCGTCGGTCAGGTTCTCTGACAATGCTCCGACGACGATGCCCCGACAAAGAAAAATGC
646 CCCAATGCCGTCGGTCAGGTTCTCCGGCAA---T-----G--G-TGCCCCGACGAAGAAAAATGC
* * * * * *
14731180 GGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGAC
700 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCAGGTCCGATCTTAGAC
*
14731245 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
765 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * * * **
14731310 AAGCGTGGGGGTGCTCAGCAGGGCAAAGGGGCGGGATGCGCAAGTCGGGGATTGGTCG
830 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGAACG
* * * * ** * * *
14731368 GGTCCACCTCTGCGTGCTGCCGATCTTGCTGTTGCACCCCTCTGT-TCGGTCCGATCTTAGACT-
1 GGTCCCCCTCTACGTGCTACCGATCCTGC-ACTGCAACCCTCGGTCT-GGTCTGATCTTAGACTG
*
14731431 GG---G-A----G---G-----G-----C-T------G-GCGGGAGGGC-GGGC--G--CTACGT
64 GGAATGAACTCCGTATGCCTAAGCCAACCGTCGAAACGAGCGGGCGGGCGGGGCGGGCACTACGT
* *
14731462 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
129 CGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTT
* *
14731527 TCATATTTCTGA-GGGCCAATGCCATTTTTATGGCATGTAAATTCCAGTTACAATGGTCCCTTAA
194 TCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATT-CA--TACAATGGTCCCTTAA
* * * * *
14731591 GCCTTCACATGAAGTTTCATTGACAAGACGGCTTGTTTTCCTATTTTT-ACGAGTTTTGAAAC-T
255 GCCTTCACGTGAAGTTTCA-TGGCAAGACGACTCGTTTT-CTATTTTTCACGATTTTTGAAACTT
* * **** ** *
14731654 TTTATGGTTCA-AGATTTTTTAAACTTTTTAGGGAAGGTTTTTTAG-CCC-AACTTGGTAGACTG
318 TTTACGGTT-AGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGAC-G
* *
14731716 TGATCCTTGTATTTTTGTTGGCTATGCTCAAAAAAATTCAGCT-AAAACTCGGAAGTGTATAAGA
381 TGATCCTTGTATTTTTGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGA
*
14731780 TTTTGTGACCATTTGAAATAAAGCAGTCTCCCATTTCAGACA-TTTAATGGCTACTGGCAGCAAA
444 TTTTGTGACCATTTGAAA-AAAG-TGTC-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14731844 GCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
506 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
14731909 CCAATATATGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCACACCCCCCACCCGGCCCC
571 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCC-CCC-GACCC
* * * * *** * *
14731974 CCCAATCGTCGGAACCCCAATACCGCCGGTC-GATTCTCCGATGATGGTGCCCCGGCGAAAAAAA
631 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGGTGCCCCGACGAAGAAAA
** * * ** *
14732038 ATGCAACACCAGCAGATGCCCGAGCCCAGCATTTGCTGCCGCAACCCTTAATCCA-GTCTGATCT
696 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGT-CAGGTCCGATCT
* *
14732102 TAGACTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCTGTATGCCTAAGTCAACCCAC
760 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* *
14732167 GAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-AATCG
825 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGAA-CG
* ** * ** * **
14732230 GGTCCCCCTCTATGTGCTGTCGATCTTGCTACCACAACCCTTGGTCTGGTCCAATCTTAGACTGG
1 GGTCCCCCTCTACGTGCTACCGATCCTGC-ACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* * *
14732295 GAATGAACTCCGTATGCCCAAGCCAACTGAT-GAAATGAGCGGGCGGGCGAGCGGACGGGCACTA
65 GAATGAACTCCGTATGCCTAAGCCAACCG-TCGAAACGAGCGGGCGGGCG-G-GG-CGGGCACTA
* * *
14732359 CGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
126 CGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
14732424 TCTTT-ATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
191 T-TTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
14732488 GCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTTCTATTTTTTAGGATTTTTGAAACTTT
255 GCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
14732553 TTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
319 TTACGGTTAGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
** *
14732618 TCCTCATATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
384 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
14732683 TGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
449 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
14732748 ATCTCAAACGC-CTTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATAT
514 ATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * *
14732812 ATGGGCCAAGTACCAGCACCCATTGCACATTATGTGCGCACACCCCCCGGCCCGCCAGATCATCG
578 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCC-CCCGATCGTCG
* *
14732877 AAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGATGAAGAAAA
642 GAACCCCAATGCCGTCGGTCAGGTTCTCC---G--G---C-A--ATGGTGCCCCGACGAAGAAAA
* * * *
14732942 ATGCGGCACCAGCACATGCCC-AACCCAGCATGTGCTGCCGTAACCCTCGGTCCA-GTCCAATCT
696 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGT-CAGGTCCGATCT
*
14733005 TAGACTAGGAATGAACTCCG
760 TAGACTGGGAATGAACTCCG
14733025 GGCGGGCACT
Statistics
Matches: 4481, Mismatches: 556, Indels: 390
0.83 0.10 0.07
Matches are distributed among these distances:
861 2 0.00
862 221 0.05
863 5 0.00
865 1 0.00
866 104 0.02
867 15 0.00
868 33 0.01
869 119 0.03
870 45 0.01
871 135 0.03
872 15 0.00
873 13 0.00
874 36 0.01
876 2 0.00
877 5 0.00
878 272 0.06
879 170 0.04
880 162 0.04
881 52 0.01
882 6 0.00
883 4 0.00
884 2 0.00
885 3 0.00
886 1 0.00
887 6 0.00
888 1 0.00
889 5 0.00
890 187 0.04
891 164 0.04
892 495 0.11
893 99 0.02
894 7 0.00
895 18 0.00
896 151 0.03
897 66 0.01
898 85 0.02
899 78 0.02
900 350 0.08
901 216 0.05
902 286 0.06
903 344 0.08
904 485 0.11
905 15 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
GGTCCCCCTCTACGTGCTACCGATCCTGCACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGTCGAAACGAGCGGGCGGGCGGGGCGGGCACTACGTCG
GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTC
ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TAGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAA
TGCCGTCGGTCAGGTTCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGAACG
Found at i:14729498 original size:26 final size:26
Alignment explanation
Indices: 14729458--14729510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14729448 CTGGTCCAAT
* *
14729458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACACCGTATG
14729484 CTTAGACTGGCAATGAACACCGTATG
1 CTTAGACTGGCAATGAACACCGTATG
14729510 C
1 C
14729511 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACACCGTATG
Found at i:14730368 original size:26 final size:26
Alignment explanation
Indices: 14730339--14730389 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14730329 CGGTCCGATC
*
14730339 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCATATGG
14730365 TTAGACTGGGAATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
14730390 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:14731267 original size:26 final size:26
Alignment explanation
Indices: 14731238--14731290 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14731228 CCGATCCGAT
14731238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14731264 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14731290 C
1 C
14731291 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14732139 original size:26 final size:26
Alignment explanation
Indices: 14732100--14732152 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14732090 CCAGTCTGAT
14732100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14732126 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14732152 C
1 C
14732153 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14733692 original size:26 final size:26
Alignment explanation
Indices: 14733663--14733715 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14733653 TCGATCCGAT
14733663 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14733689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14733715 C
1 C
14733716 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14734637 original size:26 final size:26
Alignment explanation
Indices: 14734560--14734638 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14734550 TCGGTTCGAT
* *
14734560 CTTAGACTGGGAATGAACTCCGTATC
1 CTTATACTGGGAATGAACTCCGTATG
*
14734586 CTTATACTGGGAATGAACTCTGTATG
1 CTTATACTGGGAATGAACTCCGTATG
14734612 CTTATACTGGGAATGAACTCCGTATG
1 CTTATACTGGGAATGAACTCCGTATG
14734638 C
1 C
14734639 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTATACTGGGAATGAACTCCGTATG
Found at i:14737213 original size:26 final size:26
Alignment explanation
Indices: 14737183--14737236 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14737173 TGGTCCATCA
*
14737183 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGAAATGAACTCCATATGCT
*
14737209 TAGACTGGAAATGAACTCCGTATGCT
1 TAGACTGGAAATGAACTCCATATGCT
14737235 TA
1 TA
14737237 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCATATGCT
Found at i:14738648 original size:902 final size:885
Alignment explanation
Indices: 14736610--14739130 Score: 3361
Period size: 902 Copynumber: 2.8 Consensus size: 885
14736600 ACGGGATGCC
* *
14736610 ATTTTTACGTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
1 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * ** *
14736675 GTAAAGTTTCATGGCAAGACGGCCCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGTTGTTC
66 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTT
*
14736740 GAGATTTTTTAAAATTTTTTCGAAAGGAGATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
131 GAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * ** * * *
14736805 TTTTGTTCGCATGCACAAAACAATTTTGCTAAAAATTTGAAGTGTAAAAGATTTTGTGACCATTT
195 TTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * * *
14736870 GAATAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTTAAAT
260 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
14736935 GCTGTCTAAAGGGGTGTGGGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
325 GCTCTTTAAGGGGGTGTGAGTTCTCAA-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * *
14737000 TG-CCAGTAGCCATCGCACATCATGTGTGCACACCCCCTCGACCCCCCGATCGCCAGAACCCCAA
389 -GACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCAATCGCGA-AACCCCAA
* * * *
14737064 TGTCGTCGGTCAGGTTCTCCGGT-GATGCTCCGGTGATGGTGCCCCAACGAAGAAAAATGCGGCA
451 TGCCGTCGGTCAGGTTCTCC-GTCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCA
* * * * * *
14737128 CCAGCACATGCTCGAGCCCAACATGTGCT-ACAGTAACCCTCGATCTGGTCCATCATAGACTGGG
515 CCAGCACATGCCCGAGCCCAGCATGTGCTGACA-TAACCCTCGATCCGATCGATCTTAGACTGGG
* * *
14737192 AATGAACTCCATATGCTTAGACTGGAAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGA
579 AATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
14737257 GTGCGGGTGCTCAACAGGCCAGAAGGGTGGGATGCGCAAGCGGGGGATCGATCGGGTCCCCCTCT
644 GTGCGGGAGCTCAACCGGCCAG-AGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTT
** * * * * *
14737322 GTGTGTTGCCTATCCTGCTACCACAACCCTCAATCTGGTCCGATCTTAGACTGGGAATAAACTCC
708 GCATGCTGCCGATCCTACTACCACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATAAACTCC
14737387 GTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATGCG
773 GTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATGCG
*
14737452 CAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGCCACATCTTCAT
838 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCAT
* * * *
14737500 ATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAA
1 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
14737565 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTGCGG-TT
66 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTT
* * * * *
14737628 CAGGATTTTTTAAACTTTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAGAGGTGATCCTTGTA
131 GA-GATTTTTTAAA-ATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
14737693 CTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
194 TTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
14737758 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAA
259 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAA
14737823 TGCTCTTTAAGGGGGTGTGAGTTCTCACAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
324 TGCTCTTTAAGGGGGTGTGAGTTCTCA-AGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
14737888 GGACAAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCAAATCGTCGAAACCCTAA
388 GGACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-AATCG-CGAAACCCCAA
* * * **
14737953 TGCCGCCGGTCAGGTTCTCCGTCGATGCTCCGGGGATGGTGCCCCGACGAAAAAAAATGTGAAAC
451 TGCCGTCGGTCAGGTTCTCCGTCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCAC
* * * * *
14738018 CAGCACATGCCCGGGCCTAGCATGTGCTGCCACAACCCTCAATCCGATCTGATCTTAGACTGGGA
516 CAGCACATGCCCGAGCCCAGCATGTGCTGACATAACCCTCGATCCGATC-GATCTTAGACTGGGA
* * *
14738083 ATGAACTCCGTATGAC-TACACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGC
580 ATGAACTCCATATG-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
14738147 GTGCGGGAGCTCAACCGACCAGAGGGACGGGATGTGCAAGCCGGGGATCGATTGGGTCCCCCTTT
644 GTGCGGGAGCTCAACCGGCCAGAGGG-TGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTT
* * * *
14738212 GCATGCTACCGATCCTACTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCC
708 GCATGCTGCCGATCCTACTACCACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATAAACTCC
*
14738277 GTATGCCTAAGCCAACCGACGACACGAGCGGGCGAGTGAGTGGGCGAGCACTACGTC-GACCAGA
773 GTATGCCTAAGCCAACCGACGA-A--A-CGAGC--G-G-GT--G-G-GCACTACGTCAG-CCAGA
* * *
14738341 GAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATTTTCAT
825 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCAT
* * *
14738402 ATTTCTACGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTATGCCTTCAC
1 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
14738467 GTGAA-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTT
66 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTT
* **
14738531 GAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTACATATGATCCTTGTAT
131 GAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
14738596 TTTTGTTAACATGCACAAAAAAATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGGCCATTT
195 TTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
14738661 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACTTGTAGAATCTCAAAA
260 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAAT
* *
14738726 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAG
325 GCTCTTTAAGGGGGTGTGAGTTCTC-AAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
14738791 TACCTGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCACCCCCAATCGCCGGAACCCCAA
389 GACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-CCCCCAATCG-CGAAACCCCAA
* * * * * *
14738856 TGCCGTCGGTCAAGTTATCTGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATATGGCAC
451 TGCCGTCGGTCAGGTTCTCCGTCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCAC
* * * * *
14738921 CAGTACATGCCCGAGCCCAGAATGTGCTGTCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGA
516 CAGCACATGCCCGAGCCCAGCATGTGCTGACATAACCCTCGATCCGAT-CGATCTTAGACTGGGA
* * * * * *
14738986 ATGAACTCCATATGCTTAGATTTGGAATGAACTTCGTATGCCTAAGTTC-TCCCATGAAACAAGC
580 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGC
* ** * * * *
14739050 GTACGGGCTCTCAGCCGGTCAGAGGGGTAGGATGCGCAAGCCGAGGATCGATCGGGT-CCCCTTC
644 GTGCGGGAGCTCAACCGGCCAGA-GGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTT-
*
14739114 TGCATGCTGTCGATCCT
707 TGCATGCTGCCGATCCT
14739131 GCGCAAGTCG
Statistics
Matches: 1425, Mismatches: 171, Indels: 57
0.86 0.10 0.03
Matches are distributed among these distances:
888 13 0.01
889 378 0.27
890 307 0.22
891 2 0.00
893 1 0.00
894 4 0.00
896 1 0.00
897 1 0.00
898 2 0.00
900 1 0.00
901 45 0.03
902 418 0.29
903 241 0.17
904 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTT
GAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGCGAAACCCCAATGCCG
TCGGTCAGGTTCTCCGTCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCA
CATGCCCGAGCCCAGCATGTGCTGACATAACCCTCGATCCGATCGATCTTAGACTGGGAATGAAC
TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
AGCTCAACCGGCCAGAGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTGCATGCTG
CCGATCCTACTACCACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCT
AAGCCAACCGACGAAACGAGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCAT
Found at i:14741864 original size:889 final size:886
Alignment explanation
Indices: 14739692--14742294 Score: 3520
Period size: 895 Copynumber: 2.9 Consensus size: 886
14739682 GACACCAGCA
* * * * * *
14739692 TATGCCTAAGCCAATCGACGAAACGAGTGGGTGGGCACTACGTCAGCCAGAGAGACGGGATGCGC
1 TATGCCTAAGCCAACCGACGAAAC-AGCGCGCGGGCACTACGCCAGCCAGAGAGACGAGATGCGC
* * *
14739757 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCATATCTTCATATTTCTGCATGCCAGTGC
65 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
14739822 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAG
130 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
14739887 ATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAATTTT
195 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTT
* * * *
14739952 TTCGGAAGGAGTTTTGGCCCCAAACTTGGCAAACGTAATCCTTGTATTTTTGTTGGCATGCACAA
260 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14740017 AAAAATTCATCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
325 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14740082 CCATACACTTTAATGGCTACTGGCAGCATACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
390 CCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
14740147 AGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAAGGCCAAGTACTAGCACCCATCACAC
455 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * **
14740212 ATCATGTGCGCATGCCCCCCCCGCCACCCTCGATCGTCGGAACCCCAATGCCTCCAGTCAGGTTC
520 ATCATGTGCGCA--CACCCCCC-AAACCCCCGATCGTCGGAACCCCAATGCC-CTGGTCAGGTTC
* * * * * *
14740277 TCCGGCGATGCTCCGACGATGGTGCCCCGTTAAAGAAAAATGCAGCACCAGTACATGCCCTAGCC
581 TCCGACGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* *
14740342 CAGCATGTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACT-GGAATGAACTCCATATGGTT
646 CAGCATGTGCTCCTGCAACCCTCG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT
* * * * ** * **
14740406 AGACTGGGAA-AAAATTTCGTATGCCAAAGTCAACCCACAAAACAAACGTACGGGGGCTCAGCCG
710 AGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCATGAAACAAACGTACGGGCGCTCAGCTA
* * * *
14740470 GCCAGAGGGGCGGGATGCACAAGCCGGTGATCGACCAGGTCCCCT-TTTGCATGCTGCCGATCCT
774 GCCAGAGGGGCGGGATGCACAAGCCGG-GATCGATCGGGTCCCCTCTATG-ATGCTGCCAATCCT
* * *
14740534 ACTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTG
837 ACTACCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCTG
* * * *
14740584 TATACCTAAGCCGAGCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGAT
1 TATGCCTAAGCCAACCGACGAAAC-AGC--GC--GCGGGCACTACGCCAGCCAGAGAGACGAGAT
* * * * **
14740649 GCGCAAGCCGTGGATCGCTAGGGTGTTAGATGGGTTTAGGGACATCTTCATATTTCTGTGTGCCA
61 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
14740714 ATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
126 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
14740779 CAAGAGGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTACAAGATTTTTTAAAA
191 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAA
* *
14740844 TTTTTTTGGAAGGTGTTTTGGCCCC-AACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGC
256 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
14740908 ACCAAAAAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCC
321 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
14740973 CATTCCAGACACTTTAATGGCTACTGACAGCAAACTTGTAAAATCTCAAAAGCTTTTTAAGGGGG
386 CATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* **
14741038 CGTGAGTTCTCGAATTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
451 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
** * *
14741103 GCACATCATGTATGCACACCCCCCTAAAACCCCCGATCGTTGGAACCCCAATGCCGCTGGTGAGG
516 GCACATCATGTGCGCACACCCCCC--AAACCCCCGATCGTCGGAACCCCAATGCC-CTGGTCAGG
** * *
14741168 TTCTCCGACGATGCTTCGGTGATAGTGCCCC-AGCGAAGAAAAATGCAGCACCAGCACATGCCCG
578 TTCTCCGACGATGCTTCGACGATGGTGCCCCGA-TGAAGAAAAATGCAGCACCAGCACATGCCCG
* * *
14741232 AACCCAGTATGTGCTCCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTAT
642 AGCCCAGCATGTGCTCCTGCAACCCTC-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
* * *
14741297 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAACCATGAAACCAACGTCCGGGCGCTCAG
706 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAACGTACGGGCGCTCAG
* * *
14741362 CTAGCCAGAGGGACGGGATGCACAAGCCAGGGATCGGTCGGGTCCCTCTCTATG-TGCTGTCAAT
771 CTAGCCAGAGGGGCGGGATGCACAAGCC-GGGATCGATCGGGTCCC-CTCTATGATGCTGCCAAT
* *
14741426 CCTACTACTGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTG
834 CCTACTACCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCTG
* *
14741479 TATGCCGAAGCCAACCGACGAAA-AGCGCGCGGGCACTCCGCCAGCCAGAGAGACGAGATGCGCA
1 TATGCCTAAGCCAACCGACGAAACAGCGCGCGGGCACTACGCCAGCCAGAGAGACGAGATGCGCA
* * *
14741543 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGAC
66 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
14741608 ATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
131 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
14741673 CAACTCGTTTTCTATTTTTCATGATTTTTAAAAC-TTTTACGGTTCAAGATTTTTTAAAATTTTT
196 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
* *
14741737 TTGGAAGGAGTTTTGGCCCCAAACCTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
261 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14741802 AAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
326 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
* *
14741867 CAGAAACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
391 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14741931 TTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAACACCCATCGCACA
456 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *** * * * *
14741996 TCATGTGCGCGCACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCTTCGATCAGGTTCGCCT
521 TCATGTGCGCACACCCCCCAAACCCCCGATCGTCGGAACCCCAATGCCCT-GGTCAGGTTCTCCG
* ** *
14742061 ATC-ATGTTTCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAG
585 A-CGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
* * * * * * *
14742125 CATGTGCTACC-GCAACCCTCGGTCCGATCCGATTTTAGATTGGGAATGAATTACGTATGCTTAG
649 CATGTGCT-CCTGCAACCCTC-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * * * *
14742189 ACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCAGGCTCTCAG-TCAGC
712 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAACGTACGGGCGCTCAGCT-AGC
* * *
14742253 CAGAGGGGCAGGATGCGCAAGCCGGGGATCGATTGGGTCCCC
776 CAGAGGGGCGGGATGCACAAGCC-GGGATCGATCGGGTCCCC
14742295 CTCTGCGCGC
Statistics
Matches: 1498, Mismatches: 195, Indels: 43
0.86 0.11 0.02
Matches are distributed among these distances:
885 3 0.00
886 227 0.15
887 4 0.00
888 130 0.09
889 333 0.22
891 2 0.00
892 24 0.02
893 10 0.01
894 128 0.09
895 401 0.27
896 233 0.16
897 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
TATGCCTAAGCCAACCGACGAAACAGCGCGCGGGCACTACGCCAGCCAGAGAGACGAGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCAAACCCCCGATCGTCGGAACCCCAATGCCCTGGTCAGGTTCTCCGA
CGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTCCTGCAACCCTCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAACGTACGGGCGCTCAGCTAGCCAGAG
GGGCGGGATGCACAAGCCGGGATCGATCGGGTCCCCTCTATGATGCTGCCAATCCTACTACCGCA
ACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCTG
Found at i:14742195 original size:26 final size:26
Alignment explanation
Indices: 14742159--14742210 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14742149 CGATCCGATT
* *
14742159 TTAGATTGGGAATGAATTACGTATGC
1 TTAGACTGGGAATGAACTACGTATGC
*
14742185 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTACGTATGC
14742211 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGC
Found at i:14742954 original size:26 final size:26
Alignment explanation
Indices: 14742925--14742977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14742915 TCGGTCTGAT
14742925 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
14742951 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14742977 C
1 C
14742978 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14743024 original size:767 final size:766
Alignment explanation
Indices: 14741537--14743051 Score: 2144
Period size: 767 Copynumber: 2.0 Consensus size: 766
14741527 AGAGACGAGA
* * * *
14741537 TGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATAGTTCTGCATGCC
*
14741602 AATGACATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
66 AATGACATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATG
*
14741667 GCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTACGGTTCAAGATTTTTTAAAA
131 GCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTACGGTTCAAGATTTTTT--AA
*
14741732 TTTTTTTGGAAGGAGTTTTGGCCCCAAACCTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGC
194 ------T--AA-GAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
14741797 ACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
250 ACAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
14741862 CATTTCAGAAACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGT
315 CATTTCAGAAACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTAAAGGGGT
* *
14741927 GTGATTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAACACCCATCG
380 GTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATGAGGGCCAAGTACCAACACCCATCG
* * *
14741992 CACATCATGTGCGCGCACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCTTCGATCAGGTTC
445 CACATCATGTGCGCGCACCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTC
* * *
14742057 GCCTATCATGTTTCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
510 GCCTATCATGTCTCGACGATGGTACCCCGATGAAGAAAAATATGGCACCAGCACATGCCCGAGCC
* * ** * * * *
14742122 TAGCATGTGCTACCGCAACCCTCGGTCCGATCCGATTTTAGATTGGGAATGAATTACGTATGCTT
575 CAGCATGTGCTACCGAAACCCTCAATCCGATCCGATCTTAAACTGGGAATGAACTACGTATGCTT
* * ** * *
14742187 AGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCAGGCTCTCAGTCAG
640 AGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCAG
14742252 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATTGGGTCCCCCTCTGCGCGCTGTCGATCC
705 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATTGGGTCCCCCTCTGCGCGCTGTCGATCC
** *
14742314 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATAGTTCTGTGTTCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATAGTTCTGCATGCC
* * * ***
14742379 AATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTTTGTCAAGTTTCATG
66 AATGACATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATG
* ** *
14742444 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTT-A-
131 GCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAAC-TTTTACGGTTCAAGATTTTTTAAT
* *
14742507 AA-A-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAT
195 AAGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * * *
14742570 TTAGCTAAGAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCATAC
260 TCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAA
*
14742635 ACCTTAATGGCTACTGGCAGCATACCTGTAAAATCTCAAATGCTCTTAAAGGGGGTGTGAGTTCT
325 ACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTAAA-GGGGTGTGAGTTCT
*
14742700 CGAGGTTTGATGAAGGATAGGGGGCCAATAT-AGGGGCCAAGTACCAGCACCCATCGCACATCAT
389 CGAGGTTTGATGAAGGATAGGGGGCCAATATGA-GGGCCAAGTACCAACACCCATCGCACATCAT
* * *
14742764 GTGTGCATGCACCCCCCGCCACCCCCGATCGCCGGAACCCCAATGTCGTCGATCAGGTTC-TCTG
453 GTGCGC--GCACCCCCCGCC-CCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCGCCT-
* * * * * *
14742828 GTGATG-CTCTGGCGATGGTACCCTGTTGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAG
514 ATCATGTCTC-GACGATGGTACCCCGATGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAG
* * * *
14742892 CATGTGCTACCGAAACCCTCAATTCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCTTAGA
578 CATGTGCTACCGAAACCCTCAATCCGATCCGATCTTAAACTGGGAATGAACTACGTATGCTTAGA
* * *
14742957 CTGGGAATGAATTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCA
643 CTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCAGCCA
* *
14743022 GAGGGGCGGGATGCGCAAGTCGGGGATCGA
708 GAGGGGCAGGATGCGCAAGCCGGGGATCGA
14743052 CCAGGTCCCC
Statistics
Matches: 656, Mismatches: 74, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
763 162 0.25
764 79 0.12
766 17 0.03
767 225 0.34
775 1 0.00
777 154 0.23
778 18 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (766 bp):
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATAGTTCTGCATGCC
AATGACATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATG
GCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTACGGTTCAAGATTTTTTAATA
AGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAA
CCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTAAAGGGGTGTGAGTTCTCG
AGGTTTGATGAAGGATAGGGGGCCAATATGAGGGCCAAGTACCAACACCCATCGCACATCATGTG
CGCGCACCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCGCCTATCATGT
CTCGACGATGGTACCCCGATGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
ACCGAAACCCTCAATCCGATCCGATCTTAAACTGGGAATGAACTACGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGGCA
GGATGCGCAAGCCGGGGATCGATTGGGTCCCCCTCTGCGCGCTGTCGATCC
Found at i:14743860 original size:26 final size:26
Alignment explanation
Indices: 14743824--14743876 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14743814 CCAGTCCGAT
14743824 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14743850 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14743876 C
1 C
14743877 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14744751 original size:26 final size:26
Alignment explanation
Indices: 14744715--14744765 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14744705 CCGGTCCAAT
14744715 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14744741 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
14744766 CCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14746113 original size:895 final size:894
Alignment explanation
Indices: 14742314--14748371 Score: 7496
Period size: 886 Copynumber: 6.7 Consensus size: 894
14742304 CTGTCGATCC
* * * * *
14742314 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATAGTTCTGTGTTCC
1 TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* *** *
14742379 AATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTTTGTCAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
14742444 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTT---
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAA
14742506 A---------AA--A-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
196 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
14742559 CATAAAAAAATTTAGCTAAGAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCC
261 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
14742624 CCATTTCATACACCTTAATGGCTACTGGCAGCATACCTGTAAAATCTCAAATGCTCTTAAAGGGG
326 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
14742689 GTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCAT
391 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
14742754 CGCACATCATGTGTGCATGCA-CCCCCC-GCCACCCCCGATCGCCGGAACCCCAATGTCGTCGAT
456 CGCACATCATGTGCGCA--CACCCCCCCAG-C-CCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * * * * ** **
14742817 CAGGTTCTCTGGTGATGCTCTGGCGATGGTACCCTGTTGAAGAAAAATATGGCACCAGCACATGC
517 CAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * ** * * *
14742882 TCGAGCCCAGCATGTGCTACCGAAACCCTCAATTCGGTCTGATCTTAAACTGGGAATGAACTCCG
582 TCGAGCCAAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
14742947 TATGCTTAGACTGGGAATGAATTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
647 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * ** * * * *
14743012 CAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCAGGTCCCCCACTACGTGCTACCG
712 CAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACATGCTGCCG
** *
14743077 ATCCTGCTACCGGAACCCTCAGTCCGATCT-AATCTTAGACTGGGAATAAACTCCGTATGCCTAA
776 ATCCTGCTACCACAACCCTCAGTCCGATCTGAA-CTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** *
14743141 GCCAACCGACGAAATGAGTGGACGGGCAGGCGGGCACTACATCGGCCAGAGAGACGAGA
840 GCCAACCGACGAAA-CA--AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
14743200 TACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTTTGTGTGCC
1 TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
** *
14743265 AATGATATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
14743330 GCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTGTAGTTCAGGATTTTTTTAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAA
*
14743395 ATTTTTTTGGAAGGAGTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TCTGGCAT
196 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCAT
* * *
14743459 GCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTAT-
260 GCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
14743523 CCCATTTTAGAGACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GG
325 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* ** * * *
14743587 GGTGTGAGTTCTCAAATTTTGATGAGGGATACGGGGCCAATATATGGGCCAAGTACTAGCACCCA
390 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * * **
14743652 TCGCACATCATGTGCGCACAGCCCCCCCGAAACCCCCGACCGTCGGAACCCCAATGCCACCGGTC
455 TCGCACATCATGTGCGCACA-CCCCCCC-AGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
14743717 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGC
518 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
14743781 CCGAACCCAA-TATGTGCT-CCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC
582 TCG-AGCCAAGCATGTGCTGCC-GAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * * *
14743844 CCTATGCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACCAGCGCGCAGGTG
645 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * * * *
14743909 CTCAGCCGGCCAGAGGAGCAGGATGCACAAGTCAGGGATCAGTCGGGTCCCCCTCTTCATGCTGT
710 CTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACATGCTGC
* ** * * *
14743974 CAATCCTGCTGTCACAACCCTCAGTCCGGTTTG-ATTTAGACTGGGAATGAACTCCGTATGCCTA
774 CGATCCTGCTACCACAACCCTCAGTCCGATCTGAACTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
14744038 AGCCAACCGACG--A-AA-TGAGCGGGCGGGCACTATGCCAGCCAGAGAAACGGGA
839 AGCCAACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
*
14744090 TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
1 TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
14744155 AATGCCATTTTTATGGCTTGTAAATTCA-ACAATGGTCCCTTAAGCCTTCACGT-AAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* ** * *
14744218 GCAAGACAACTAATTTTTTATTTTTCACGATTTTCAAAACTTTTTGCAGTTC-GAGATTTTTTAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAG-GATTTTTTAA
* * *
14744282 AATTTTTTTGTAAGGAGTTTTGGCCCCAAACTTGTTAGATGTGATCCTTGTATTTTTGTTGGCAT
195 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
14744347 GCACAAAAAAATTGAGCTAAACAA-TCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGT
260 GCATAAAAAAATTCAGCTAAA-AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * ** *
14744411 CCCCATTTTAAACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAATACTCTTTAAGG
324 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
14744476 GGGTGTGAGTTCTCAAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCA
389 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
14744541 ATCGCACATCATGTGCGCACACACCCCCCCGGTCCGCCCGATCACTGGAACCCCAATGCCGTCGA
454 ATCGCACATCATGTGCG--CACACCCCCCCAG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGG
* * *
14744606 TCAGGTTCTCCGGTGATGCACCGACGATGGTGCCCCAACGAAGAAAAATGCGACACCAGCACATG
516 TCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * *
14744671 CCCGAGCTC-AGCATGTGCTGTCGAAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTC
581 CTCGAGC-CAAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * *
14744735 TGTATGCTTAGACTGGGAATGAACTCTGTATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
645 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* ** * * * * * *
14744800 CTCAGCAAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAGGTCACCCTCTACGTAC-GG
710 CTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC-CCCTCTACATGCTGC
* * ** * *
14744864 TGATCCTGCTACCACAACCCTCAATCTAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
774 CGATCCTGCTACCACAACCCTCAGTCCGATCTGAACTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
14744929 AGCCAACTGACGAAAAAAGCGTGCGGGCGGGCGGGCGGGCTCTACGTCGGCCAAAGAGACAGGA
839 AGCCAACCGACGAAACAA--------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
14744993 TGCGCAAGCCGTGGATCGATAGTGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* * *
14745058 AATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCCTA
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* ** * * **
14745123 GTAAGGTGACTCGTTTTCTAGTTTTCACGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAA
*
14745188 ATTTTTTTGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
196 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
14745253 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
261 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
14745318 CCATTTCAGACACTTTAATGGCTA-TAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
326 CCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
** *
14745382 GGTGTGAGTTCTTAAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
390 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
14745447 TCACACATCGTGTGCGCACA-CCCCCCAGCCCCCCTGATCACCGGAACCCCAATGCCGTCGGTCA
455 TCGCACATCATGTGCGCACACCCCCCCAGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCA
* ** *
14745511 AGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG-GAGCACCAGCACATGCT
519 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG-GCACCAGCACATGCT
* * *
14745575 CGAGCCAAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
583 CGAGCCAAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
14745640 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTC
648 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
14745705 AATCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTTGGGTGCCCCTCTGCATGCTGCCGA
713 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACATGCTGCCGA
* * * *
14745770 TCCTGCTACCATAACCCTCGGTCCGATCTGAAATTAGACTTGGAATGAACTCCGTATGCCTAAGC
777 TCCTGCTACCACAACCCTCAGTCCGATCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
14745835 CAACCAACGAAACAAGCGGGCGGGCGGGCATTACGTCGGCCAGAGAGACGGGA
842 CAACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * *
14745888 TGCGCAAGTCGTGGATCGATAGTGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* *
14745953 AATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT-ACT
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-T
* **
14746017 GGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTGGGGATTTTTTAA
130 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAA
* * *
14746082 AATTTTTTCGGAAGGATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
195 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
14746147 GCATAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
260 GCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* ** *
14746212 CCCATTACAGACACTTTAATGGCTAAAGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
325 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
14746277 GGTGTGAGTTCTGGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
390 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * ** *
14746342 TCGCACATCATGTGTGCACACCCCCTCCGGCCGCCCCGATCGCTAGAACCTCAATG-C--C-GTC
455 TCGCACATCATGTGCGCACACCCCC-CCAGCC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* * *
14746403 -GG-T-T-AGGT--T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAACACATGAC
518 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG-C
* *
14746461 -CGAGCCCAGCATGTGCTGCC-ACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
582 TCGAGCCAAGCATGTGCTGCCGA-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
14746524 GTATGCTTAGACTGCGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCATGCGGGCGC
646 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * *
14746589 TCAACCGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCTCTTTGCGTGCAGCC
711 TCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC-CTCTACATGCTGCC
* * * * *
14746654 GATCTTGCTACCACAACCCTCAG-CTTGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTA
775 GATCCTGCTACCACAACCCTCAGTC-CGATCTGAACTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
14746718 AGCCAACCGACGAAACGAGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
839 AGCCAACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
14746774 TGTGCAAGTCGTGGATCGATAGTATGGTAGGTGGGTTTAGGCACATTTTCATATTTCTACGTGCC
1 TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
*
14746839 AATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** ** *
14746904 GCAAGACGACTCATTTTTTATTTTTCACGATTTTGGATCCTTTTTGCAGTTCAGGATTTTTTAAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAA
* * * * * * *
14746969 ATTTTTTCGGAAGGAGTTTTGGTCGCAAACATGGTAGACATGATCCTTGTATTTTTTTTGGCACG
196 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * *
14747034 CACAAAACAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCC
261 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
14747099 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
326 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
14747164 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCAT
391 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
14747229 CACACATCATGTACGCACACCCCCCC-GACCCCTCCGATCGTCGAAACCCCAATGCCGTTGGTCA
456 CGCACATCATGTGCGCACACCCCCCCAG-CCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * * * *
14747293 GGTTCTCCGATGATCCTTCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCATATGCTC
519 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTC
* ** * * *
14747358 GAGCCTAGCATGTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAATCCATA
584 GAGCCAAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG------A-A
14747423 TGCTTAGACTGGGAATGAACTATGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
642 --C-T---C----------C---GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
14747488 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGGGCAAGCCGGGGGTCGGC
688 CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
** * * * * *
14747553 CGGGTGCCCCTCTATGTACTGCCGATCCTGCTGCTACAACCCTCAGTCCGATCTGATCTTAGAGT
753 CGGGT-CCCCTCTACATGCTGCCGATCCTGCTACCACAACCCTCAGTCCGATCTGAACTTAGACT
* ** * **
14747618 GGGAACGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCGGGCGGGCGGGCACTACGCCATC
817 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGC
* *
14747683 CAAAGAGATGGGA
882 CAGAGAGACGGGA
* * * *
14747696 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGAC
1 TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* *
14747761 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACCTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
** * *
14747826 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-TGGA-TTTTTAAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAA
* *
14747889 ATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
196 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
14747954 CATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
261 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
14748019 CCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
326 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
** *
14748084 GTGTGAGTTCTCGATTTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAATATAAAGGCCAAGT
391 GTGTGAGTTCTCGAGGTTTGATGAGGGATA----G--------GGGGCCAATATAAGGGCCAAGT
** * * ** * *
14748149 ACCAGCACCCATTACACATCATATGCGCACTCTCCCCCTGGCCCCCTCGATCGTCAGAACCCCAA
444 ACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCAGCCCCC-CGATCGCCGGAACCCCAA
* * * * * * * *
14748214 TACTGTCGGTCAAGTTCTCCGATCATGTTCTCCGATCATGTTCTGGCGGTGGTGCCTCGACAAAG
507 TGCCGTCGGTCAGGTTCTCCGGTGATG--CTCCG---A--------CGATGGTGCCCCGACGAAG
* * * * * * *
14748279 AAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC-ACAACCCTTGGTCTGATCCG
559 AAAAATGCGGCACCAGCACATGCTCGAGCCAAGCATGTGCTGCCGA-AACCCTCGGTCCGGTCCG
14748343 ATCTTAGACTGGGAATGAACTCCGTATGC
623 ATCTTAGACTGGGAATGAACTCCGTATGC
14748372 CTAAGTCAAC
Statistics
Matches: 4501, Mismatches: 528, Indels: 252
0.85 0.10 0.05
Matches are distributed among these distances:
884 3 0.00
885 24 0.01
886 926 0.21
887 5 0.00
888 182 0.04
889 90 0.02
890 219 0.05
891 285 0.06
892 8 0.00
893 6 0.00
894 4 0.00
895 482 0.11
896 98 0.02
897 22 0.00
898 48 0.01
899 341 0.08
900 61 0.01
901 109 0.02
902 252 0.06
903 195 0.04
904 27 0.01
905 312 0.07
906 2 0.00
909 1 0.00
919 1 0.00
920 225 0.05
921 3 0.00
922 373 0.08
923 5 0.00
924 1 0.00
932 50 0.01
933 47 0.01
934 1 0.00
935 4 0.00
936 1 0.00
937 1 0.00
938 1 0.00
939 1 0.00
940 1 0.00
946 84 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
TGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAA
ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGA
GCCAAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTCTACATGCTGCCGATCCT
GCTACCACAACCCTCAGTCCGATCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
Found at i:14746532 original size:26 final size:26
Alignment explanation
Indices: 14746503--14746555 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14746493 CCGGTCCGAT
*
14746503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14746529 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14746555 C
1 C
14746556 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:14747435 original size:26 final size:26
Alignment explanation
Indices: 14747399--14747477 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
14747389 CCGGTCTGAT
* *
14747399 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
14747425 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14747451 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14747477 C
1 C
14747478 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14748245 original size:13 final size:13
Alignment explanation
Indices: 14748227--14748257 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
14748217 TGTCGGTCAA
14748227 GTTCTCCGATCAT
1 GTTCTCCGATCAT
14748240 GTTCTCCGATCAT
1 GTTCTCCGATCAT
14748253 GTTCT
1 GTTCT
14748258 GGCGGTGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.13, C:0.29, G:0.16, T:0.42
Consensus pattern (13 bp):
GTTCTCCGATCAT
Found at i:14748955 original size:26 final size:26
Alignment explanation
Indices: 14748919--14748971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14748909 CTGATCCAAT
*
14748919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14748945 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14748971 C
1 C
14748972 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14749198 original size:26 final size:26
Alignment explanation
Indices: 14749169--14749218 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14749159 ATCTGATCTA
*
14749169 AGACTCGGAATGAACTCCGTATGCTT
1 AGACTCGGAAAGAACTCCGTATGCTT
*
14749195 AGACTGGGAAAGAACTCCGTATGC
1 AGACTCGGAAAGAACTCCGTATGC
14749219 CAAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTCGGAAAGAACTCCGTATGCTT
Found at i:14750097 original size:25 final size:26
Alignment explanation
Indices: 14750063--14750114 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14750053 CCAATCCGAT
*
14750063 CTTAGACT-GGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
14750088 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
14750114 C
1 C
14750115 GTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:14750987 original size:26 final size:26
Alignment explanation
Indices: 14750958--14751036 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
14750948 CCGGTCTGAT
*
14750958 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14750984 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14751010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14751036 C
1 C
14751037 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14751901 original size:26 final size:26
Alignment explanation
Indices: 14751872--14751924 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14751862 CCAATCCGAT
14751872 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14751898 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14751924 C
1 C
14751925 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14752438 original size:26 final size:26
Alignment explanation
Indices: 14752409--14752461 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14752399 CTGATCTGAT
* *
14752409 CTTAGATTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14752435 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14752461 C
1 C
14752462 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14753326 original size:26 final size:26
Alignment explanation
Indices: 14753290--14753342 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14753280 CTGGTCTGAT
14753290 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14753316 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14753342 C
1 C
14753343 CTAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14753605 original size:159 final size:158
Alignment explanation
Indices: 14753316--14753692 Score: 540
Period size: 159 Copynumber: 2.4 Consensus size: 158
14753306 ACTCCGTATG
* * * *
14753316 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATTCACGAAACGAGCGTCCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14753381 CGGCTAGAGGGGCGGGATGCGCAAGCCAAGGATCGATCGGGTCCCCCTCTGCATGCTGCTGATCC
65 CGACTAGAGGGGCAGGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTGCATGCTGCTGATCC
*** ** *
14753446 TACTATTGCAACCCTCGGTCCGATCCAAT
130 TACTAGCCCAACCCTCAATCCAATCCAAT
14753475 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAGCGTGCGGGCGCTCAGC
** *
14753540 CGACTAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCT-ATCGATC
65 CGACTAGAGGGGCAGGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTGCATGCTGCT-GATC
* *
14753604 CTGCTGGCCCAACCCTCAATCCAATCCAAT
129 CTACTAGCCCAACCCTCAATCCAATCCAAT
*
14753634 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAGCGTGCGGGCG
14753693 GGCGTTACAT
Statistics
Matches: 196, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
158 2 0.01
159 194 0.99
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGCGTGCGGGCGCTCAGCC
GACTAGAGGGGCAGGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTGCATGCTGCTGATCCT
ACTAGCCCAACCCTCAATCCAATCCAAT
Found at i:14755040 original size:26 final size:26
Alignment explanation
Indices: 14755011--14755063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14755001 CCAGTTTGAT
*
14755011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14755037 CTTAGACTGATAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14755063 C
1 C
14755064 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14757856 original size:881 final size:861
Alignment explanation
Indices: 14755911--14758177 Score: 3247
Period size: 881 Copynumber: 2.6 Consensus size: 861
14755901 GTCCGGTTTG
* * * * *
14755911 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGC-GAGCGG-GGGGG
1 ATCTGAGACTAGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGA-CGGCGGGAG
* * * *
14755974 GCGGGCACTATGCCGGCGAGAGAGACGGGATGCGCAAGTCGTGGGTCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
14756039 TTTAGGCACATATCCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
14756104 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * * *
14756169 GAACCATTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGTT
260 GAAACTTTTTGCGGTTCGGGATTTTTT-AAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGT
** * *
14756234 AGACATGATCTTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACA
324 AGATGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14756299 AGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCGAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AA
* * * *
14756364 CCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGCTCTTGAGGTTTGATGAGGGAT-AGGGT
453 ACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGG-
*
14756428 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACTCATGTGCGCATAACCCCCCGGCCCCCCG
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACTCATGTGCGCACAACCCCCCGGCCCCCCG
*
14756493 ATCGCCGGAACCCCAATGCTGCCGGTTAGGTTCTCCGACGATGGTACCCCAGGGAAGAAAAATAC
582 ATCGCCGGAACCCCAATGCTGCAGGTTAGGTTCTCCGACGATGGTACCCCAGGGAAGAAAAATAC
* *
14756558 GGCACCAGCACAAGCCCGAGCCTCGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGAC
647 GGCACCAGCACAAGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGAC
* **
14756623 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAGCCGCCTAG
712 TGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCAGGCACTCAGCCGCCTAG
* * * * * * * *
14756688 AGGGGTGAGATACGTAAGTCGGGGATCGGTCAGGTCCCCCTCTATGTGCTGCCGATCTTGCTGCT
777 AGGGGCGAGATACGCAAGTCGAGGATCGGTCAGGTCCCCCTCTACGTGCTGCCGAGCCTACTGCC
* * * *
14756753 GCAACTCTCGGTCTGGTCCA
842 GCAACCCTCAGTCCGATCCA
* ** * * *
14756773 ATCTGAGACTGGGAATGAACTTTGTATGCCTAAGCCAACTGGCGAAACGAGCGGACAGGCAGGCA
1 ATCTGAGACTAGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGAC-GGC-GGGA
*
14756838 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
64 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14756903 GTTTAGGCACATCTTCATATTTCTATG--TACCAAAGCCATTTTTATGGCTTGTAAATTCATACA
129 GTTTAGGCACATCTTCATATTT-T-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
**
14756966 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATT
192 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
14757031 TTTGAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTT
257 TTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAATTTTTTCGGAAGGATTTTTGGCCCCAAACTT
* * *
14757096 GGTAGATGTGATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTACAAACTCCAAGTGT
321 GGTAGATGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
14757161 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
386 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
14757226 AAACTAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAAG
451 AAACT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG
* * *
14757291 GGGCCAATATAAGGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACGCCCCTGCCGGC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC-TCATGTGCGCACA-ACCCC--CCGG-
** * * *
14757356 CCCCCCGATCGTTGGAACCCCAATGCCATCGGTCAGGTTCTCTGGTGATGCTCCGATGATGGTGC
575 CCCCCCGATCGCCGGAACCCCAATG-C-T--G-CAGG-T-T-AGGT--T-CTCCGACGATGGTAC
* * ** * *
14757421 CCC-GATGACGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTTCCGCAACCCTCG
629 CCCAG-GGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCG
14757485 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTG
693 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTG
* * * * * *
14757550 CAGGCATTCAGCCGGCTAGAGGGGCGGGATGCGCAAGTTGAGGATCGGTCGGGTCCCCCTCTACG
758 CAGGCACTCAGCCGCCTAGAGGGGCGAGATACGCAAGTCGAGGATCGGTCAGGTCCCCCTCTACG
14757615 TGCTGCCGAGCCTACTGCCGCAACCCTCAGTCCGATCCA
823 TGCTGCCGAGCCTACTGCCGCAACCCTCAGTCCGATCCA
14757654 ATCTTGA-ACTAGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGACGGACGGGT
1 ATC-TGAGACTAGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGACGG-CGGG-
* * * *
14757718 AGGCAGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATATGGTGGTAGGTG
63 AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
14757783 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAA
128 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
14757848 TGGTCCCTTAGGCCTTCACGTTAGGTTTCATGGCAAGACGATTCATTTTCTATTTTTCATGATTT
193 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * *
14757913 TTGAAACTTTTTGCAGTTCAGGATTTTTTAAATTTCTTTCGGAAAGAGTTTTGGCCCCAAACTTG
258 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAATTT-TTTCGGAAGGATTTTTGGCCCCAAACTTG
* * *
14757978 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCATCTAAAAACTCGAAGTGTA
322 GTAGATGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
14758043 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG-TACTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
14758107 AACCTGTAAAATCTCAAATGCTCTTTAAGGTGGG-GTGAGTTCTCGAGGTTTGATGAGGGATAGG
452 AA-CTGTAAAATCTCAAATGCTCTTTAAGG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG
14758171 GGGCCAA
515 GGGCCAA
14758178 GTACCACCTC
Statistics
Matches: 1256, Mismatches: 116, Indels: 48
0.88 0.08 0.03
Matches are distributed among these distances:
862 47 0.04
863 4 0.00
864 4 0.00
865 444 0.35
866 15 0.01
867 5 0.00
869 4 0.00
870 23 0.02
871 1 0.00
872 1 0.00
874 1 0.00
875 3 0.00
876 1 0.00
877 1 0.00
878 3 0.00
879 2 0.00
880 86 0.07
881 608 0.48
882 3 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (861 bp):
ATCTGAGACTAGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGACGGCGGGAGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
AAACTTTTTGCGGTTCGGGATTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAG
ATGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACTCATGTGCGCACAACCCCCCGGCCCCCCGATCG
CCGGAACCCCAATGCTGCAGGTTAGGTTCTCCGACGATGGTACCCCAGGGAAGAAAAATACGGCA
CCAGCACAAGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGG
AATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCAGGCACTCAGCCGCCTAGAGGG
GCGAGATACGCAAGTCGAGGATCGGTCAGGTCCCCCTCTACGTGCTGCCGAGCCTACTGCCGCAA
CCCTCAGTCCGATCCA
Found at i:14760905 original size:26 final size:26
Alignment explanation
Indices: 14760876--14760928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14760866 CCGATTCGGT
*
14760876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14760902 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14760928 C
1 C
14760929 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14761394 original size:906 final size:896
Alignment explanation
Indices: 14758330--14762209 Score: 4806
Period size: 906 Copynumber: 4.3 Consensus size: 896
14758320 CATGTGCCTT
* ** * *
14758330 CACAACTCTTGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACTGACG
1 CACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
** *
14758395 AAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATC
66 AAACGA----GCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* ***
14758460 GATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGC
127 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * * *
14758525 TTGTAAATTCATAGAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTT
192 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
14758590 CTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGTGT
257 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGT
** * * *
14758655 TTCAGCCCCAAACTCGGTATATGTGATCCTTGTATTTTTTTTGGCATGCGC-CAAAAAAA-TCAG
322 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA--CGCACAAAAAAATTCAG
* * * *
14758718 CTAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCTCCAATTCAGATACTT
385 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
14758783 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAG
450 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
*
14758848 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCG
515 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
14758913 CACAACCCCCCCCCCCCGAGC-CCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
580 --CAA-----GCCCCCCG-GCACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
14758977 ACGATGCTCCGA-CGATGGTGCCCCGATGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAG
637 ATGATGCTCCGATCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
14759041 CATGTGCTGCCACAACCCTCGGTCTGGTCCGATCATAGACTAGGAATGAACTCCGTATGCTTAGA
702 CATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* ** * * *
14759106 CTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGGGCGGGTGCCCAACCGGCCA
767 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCA
* * * * *
14759171 GATGGGTGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTTTGCGTGCTATCGATCCTGCTGC
832 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGC
* * ** *
14759236 CACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATAAACTTTGTATGCCTAAGCCAACCGACA
1 CACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
14759301 AAACGAGCGGGCGGGCAGACGAGCACTA-AGTCGGCCAGAGAGACGGGTTGCGAAAGCCGTGGAT
66 AAACGAGCGGGCGGGC-G--G-GCACTACA-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
14759365 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
126 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
14759430 CTTGTAAATTCATACAATGGGCCCTTAAGCCTTAACATGAAGTTTCATGGCAAGACGACTCGTTT
191 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * * *
14759495 TCTATTTTTCACGATTTTCAAAACTTTTTACAATTC-AGAATTTTGAAAA-TTTTTC-AATAGGA
256 TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA-AGGA
* *
14759557 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAG
320 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAG
* *
14759622 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGGCACTT
385 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
14759687 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
450 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
*
14759752 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGT--G
515 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * ** * * *
14759815 C--G-----CGGCCCCCCCGATCACTGGAACCCCAATGCCGCTAGCCCGGTTCTTCGATGATGCT
580 CAAGCCCCCCGGCACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT
* * *
14759873 CCGAT-GATTGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATCTGCT
645 CCGATCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * * * ** ** *
14759937 ACCGCAACCCTTAGTCTGGTCCGATCTTAGACT-GGAATGAATTTTGTATAATTAGGCTGGGAAT
710 ACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
14760001 GAACTTCGTATGCCTATGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGCCAGAGGGACA
775 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCG
* *** *
14760066 GGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCGGC
840 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGC
* * ** * *
14760123 CACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAGTCCATATGCCTAAGCCAACCGACG
1 CACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
14760188 AAATGAACGGGTGGGCGGG-AGGGTGAGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCAT
66 AAACGAGCGGGCGGGCGGGCA--CT----AC-AT--CGGCCAGAGAGACGGGATGCGCAAGCCGT
14760252 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
122 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
14760317 ATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
187 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
14760382 GTTTTCAATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAACTTTTTT-GGA
252 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAA
* * *
14760446 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCACACACAAAAAACT
316 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAAT
* * * *
14760511 TCAGCTAGAAACTCGATGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATAC
381 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
14760576 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
446 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
14760641 CGAGGTTT-ATTGAGGGATAGGGGGCCAATATTAGGGCCAAGTACCAGCTCCCATCGCACATCAT
511 CAAGGTTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
14760705 GTGCGCATAGCCCCCCGGCACCCCCAATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGT
575 GTGCGCA-AGCCCCCCGGCACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
* * *
14760770 GATGCTCTGGCGATGCTTTGGCGATGGTGCCCTCG-CGAAGAAAAATGCTGTACCAGTACATGCC
639 GATGCTC---CGA-----T--CGATGGTGCCC-CGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
14760834 CAAGCCCAGCATGTGCTACCGTAACCCTTGGTCCGATTCGGTCTTAGACTGGGAATGAACTCCGT
693 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
14760899 ATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCAAGCGGGCACTC
758 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTC
* * * **
14760964 AGCCAGCCAGAGGGGCGGGATGCTCAAGCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTACCGA
823 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGA
*
14761029 TCCTGTTGC
888 TCCTGCTGC
*** ** * * * *
14761038 TGTAACCCTTGGTCCAATCTGATCTTAGATTAGGAATGAACTCTGTATACCTAAGCCAACCGACG
1 CACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
14761103 AAACGAGCGGGCGGGCGGGCATTACATCGGCCAGAGAGACGGGATGCGCAA-CCGTGTATCGATA
66 AAACGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
14761167 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCCTGT
131 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * * * * *
14761232 AAATTCATACAACGGTCCTTTAGGCCTTCACGAGAAGTTTAATGGCAAGATGACTCGTTTTCTAT
196 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * *
14761297 TTTTCACGATTTTTGAAACTTTTTACGGTTTGTGATTTTTTAAAATTTTTTCGAAAGGATTTTTG
261 TTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
* * * * *
14761362 GACCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCATAAAAAAATTCAGCTAGAA
326 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAA
* *
14761427 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATCG
391 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
** *
14761492 CTACTGGCAATAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGA
456 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
* * * * *
14761557 TGAGGGATAGGGGTCCACTATAAGGGCCAAGTACTAGCACCCATCGCACATCATATGCGCACACC
521 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-AGC
* * * * *
14761622 CCCCTCAGCCCCTCGATCGTCGGAACCCCATTGCCGTCGGTACCCCAATGTCGCCGGTCAGGTTC
585 CCCC-C-G----GC-A-C--C----CCCGA-T--CGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
14761687 TCCAATGATGCTCC-AACGATGGTGCCTCAACGAAGAAAAATGCGGCACCAGCACATGCACGAGC
633 TCCGATGATGCTCCGATCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
14761751 CCAGCATGTGCTATCGAAACCCTCGGTCC-AGTCTGATTTTTGACTGGGAATGAACTCCGTAAGC
698 CCAGCATGTGCTACCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14761815 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCAGGCGCTTAGCC
762 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
* * * ** * ** * *
14761880 GGCCAGAGCGGCGGGATACGCAAGCCAGGGATCGGTCGGGTCCACCTCTAAGTGCTGCTGATCCT
827 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCT
*
14761945 GTTGC
892 GCTGC
** * * * * * *
14761950 TGCAACCGTTAGTTCGGTTTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGATG
1 CACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
14762015 AAATGAGCGAGCGAGCGGGCGGGCACTACGTTGGCCAAAGAGATGGGATGTGCAAGCCGTGGATC
66 -AA--A-CGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
**
14762080 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTTC
127 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
14762145 ATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
192 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
14762210 TGGAATGAGT
Statistics
Matches: 2572, Mismatches: 327, Indels: 139
0.85 0.11 0.05
Matches are distributed among these distances:
882 1 0.00
883 1 0.00
884 2 0.00
886 1 0.00
887 199 0.08
888 130 0.05
889 1 0.00
890 1 0.00
891 187 0.07
892 11 0.00
893 244 0.09
894 6 0.00
895 2 0.00
898 1 0.00
900 1 0.00
902 13 0.01
903 56 0.02
904 237 0.09
905 17 0.01
906 671 0.26
907 25 0.01
908 1 0.00
909 2 0.00
910 2 0.00
911 3 0.00
912 262 0.10
913 3 0.00
914 78 0.03
915 196 0.08
916 43 0.02
917 130 0.05
919 1 0.00
920 5 0.00
921 1 0.00
923 38 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAGCC
CCCCGGCACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGATC
GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGC
Found at i:14762665 original size:26 final size:26
Alignment explanation
Indices: 14762631--14762685 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
14762621 CGGTTTGATT
*
14762631 TTAGCCTGGGAATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCGCATGC
*
14762657 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGCATGC
14762683 TTA
1 TTA
14762686 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGCATGC
Found at i:14763570 original size:26 final size:26
Alignment explanation
Indices: 14763531--14763582 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14763521 CAGTCTGATT
*
14763531 TTAGACTGGGAATGGACTACGTATGC
1 TTAGACTGGGAATGAACTACGTATGC
* *
14763557 TTAGACTGGTAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTACGTATGC
14763583 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGC
Found at i:14764441 original size:26 final size:26
Alignment explanation
Indices: 14764412--14764464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14764402 CCTATCCGAT
*
14764412 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14764438 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14764464 C
1 C
14764465 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14766238 original size:26 final size:26
Alignment explanation
Indices: 14766190--14766242 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14766180 CCGGTCTGAT
*
14766190 CTTAGACTGGCAATGAACATCGTATG
1 CTTAGACTGGCAATAAACATCGTATG
* *
14766216 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGCAATAAACATCGTATG
14766242 C
1 C
14766243 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACATCGTATG
Found at i:14767108 original size:26 final size:26
Alignment explanation
Indices: 14767072--14767124 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14767062 TTGATCCGAT
14767072 CTTAGACTGGGAATGAAC-CCCATATG
1 CTTAGACTGGGAATGAACTCCC-TATG
14767098 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14767124 C
1 C
14767125 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14767329 original size:892 final size:887
Alignment explanation
Indices: 14762206--14769789 Score: 8917
Period size: 881 Copynumber: 8.5 Consensus size: 887
14762196 AGACGACTCG
* *
14762206 TTTTT-GGAATGAGTTTTGGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14762270 C-AAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
14762334 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGT
*
14762399 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCG
195 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** *
14762464 CACATCATGTGCACACACCCCTC-GCCCCCCCGATCACCGGAACCCCAATGCCGTCGATCAGGCT
260 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT---GTC-A-CTGG--
* * * * * * * * ** * *
14762528 CTCCAGTGATGCTCTGGTGATAGTGCCCCGATGAAGAAAAAGGTGTCATGAGTAGATGCCCGAGC
318 -T-CAG-G-TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* ** * ** * * *
14762593 CCAGCATGTGCTGCCTCAACCCTTGGTCCGGTTTGATTTTAGCCTGGGAATGAACTCCGCATGCT
379 CCAGCATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
14762658 TAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCA
444 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
14762723 GCCAGAGGGGGGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCGATCTTG
509 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * * * *
14762788 CTACCGTAACCTTCAGTCCGGTCCGATCTTAGTCTGGGAATGAACTCCGTATGACTAAGCCAATC
574 CTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
14762853 GACGAAACGAGCGGGCGGGCG-G-GCGGGCACTACGCC-GCCAGAGAGATGGGATGCGCAA-CCG
639 GAC-AAAAGAGCGGGCGGGCGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
14762914 TGGATCAATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
703 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTT
* *
14762979 TATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
767 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
14763044 AGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGA-TTTTTTAAAAT
832 CGTTTTCTATTTTTCACGATTTTT-AAACTTTTTGCGGTTCGGGATTTTTTTAAAAT
* * *
14763100 TTTTTCTGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-
* * * **
14763165 AAAAAAAAAAATTCAGCTAGAATCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
65 --ACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
14763230 CCCATTTCAGACACTTTAATCGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
128 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GG
*
14763295 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCA
192 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
*
14763360 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG-C-CGTCGGTC
257 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCAC-T-GGTC
* * * *
14763423 AAGTTCTCCGGTGATGCTCAGTCGATGGTGCCCCGACGATGAAAAATGCGCCACCAGCACAAGCC
320 AGGTTCTCC------G----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * * * *
14763488 CGAGCCCAGCATGTGTTGTCGCAACCTTCAATCC-AGTCTGATTTTAGACTGGGAATGGACTACG
374 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCG
* * *
14763552 TATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCT
438 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* ** * * * *
14763617 CAGCCAGCCAGAGGGGTAGGATGCGTAAGCCGGGGGTCGATCGGGTCCCCCTCTGCGTGCTGCCA
503 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCG
** * ** * * * *
14763682 ATCCTATTGTCGTGACCCTCGATTC-GATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
568 ATCCTGCTGCCGCAACCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
14763746 GCCAACCGAC-GAA-A-CGAGCGGGCG-GA-CAGGCACTACGTCGGGCAGAAAGACGGGATGTGC
632 GCCAACCGACAAAAGAGCGGGCGGGCGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
14763806 AAGCCGTGGATCGATTGGGTGGTACGTAGGTTTAGGCAGATCTTCATATTTCTGCATGCCAATGC
697 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
14763871 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGGAAG
762 CA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
14763936 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGG-TTTTTTTAAAAT
826 ACGACTCGTTTTCTATTTTTCACGATTTTT-AAACTTTTTGCGGTTCGGGATTTTTTTAAAAT
* * * *
14763998 TTTTTCGGAAGGATTTTTGGCTCCAAACTTGGTAGACATGATCCCTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
14764063 CAAAACAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14764128 ATTTCAAACACTTTAATGGCTATTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
14764193 GTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
195 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
14764257 CACATCATGTGCGCACACCCCTCGG-CCCCCCGGTCGTTGGAATCCTAATG-C-CGTCGGTCAGG
260 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCAC-T-GGTCAGG
** * * * * *
14764319 TTCTCCGATGATGGTGCCCTGGCGAAGAAAAATGTGGCATCAGCACATGCCCGAGCCAAGCATGT
323 TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
14764384 GCTGCCGCAACCTTC-GATCCTATCCGATCTTAGAGTGGGAATGAACTCCGTATGCTTATACTGG
388 GCTGCCGCAACCCTCAG-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
14764448 GAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
452 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * *
14764513 GGCGGGATGTGTAAGCCGAGGATC-AGCCGGGTCCCCCTCTGCGTGTTGCCGATCCTTCTGCCGC
517 GGCGGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * * **
14764577 AACCCTTAGT-TCAGTTCGATCTTAGACTAGGAATGAACTAGGTATGCCTAAGCCAACCGACAAA
581 AACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* * ** * * * * *
14764641 ACGAGCGGGCGGGCGGGCTG-GCAGGCACTACGTCTACCAGAGAGGCGAGATGCGCAAACCATAG
645 A-GAGCGGGCGGGC--GC-GAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * ** *
14764705 ATCGATAGGGTGGTAGTTGGGTTTAGGCTCATCTTCATATTTCTGTGTGCGAATGCCATTTTTAT
706 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTAT
14764770 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTCCATGGCAAGACGAACT
770 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTT-CATGGCAAGACG-ACT
* * * *
14764835 CGTTTTCTATTTTTCACGATTTTCAAAACCTTTTTCCGGTTC-AGAATTTTTTAAAAT
832 CGTTTTCTATTTTTCACGATTTT-TAAA-CTTTTTGCGGTTCGGGATTTTTTTAAAAT
* * *
14764892 TTTTTCGGATGGAGTTTTGTCCCCCAAACTTGGTAGAGCATGATCCTTGTA-TTTTGTTGGCATG
1 TTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATG
* * * *
14764956 CATAAAAAAATTCAGCAAAAAACTTTGAAGTGTACGAAGATTTTTTGACCATTTG-AAAAAGTAT
64 CACAAAAAAATTCAGCTAAAAAC-TTGAAGTGTAC-AAGATTTTGTGACCATTTGAAAAAAGTGT
*
14765020 CCACC-TTTCAGACACTTT-ATGGCTACTGGCAGCGAACCTGT-AAATCTCAAATGCTCTTTAAG
127 CC-CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
14765082 GGGTGTGA-TTCTCGAGGTTTGATGAGTGATATGTGGAGCCCAATATAAGGGCCATAGTACTAGC
191 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-G-GG-GGCCAATATAAGGGCCA-AGTACCAGC
* *
14765146 ACCCATCGCACATCATGTGCG-ACATCCCCCCGGCCCCCCCCGATCATCGGAACCCTAATGTCGT
252 ACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCCGATCGTCGGAACCCCAA--T-GT
* * * * * ** *
14765210 CGATCAAGGTCCTCCAACGATGCTCCGACGATGGAG-CCCGAGCCCAGAATAATGCGGCACCAGC
312 C-A-C-TGG---T-C-A-GGTTCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGC
* * *
14765274 ACATGCTCGAGCCCAGCATGTGTTGTCGCAA----C---CC--T-CGATC-----C---G---G-
367 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGA
* *
14765317 --TCCG-AT-CTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
432 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
14765378 GGCGCTCAGCTGGCCAGAGGGGTGAGATGCGCAAGCTGGGGATC-AGCCGGGTCCCCCTCTGCGT
497 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTGCGT
** * * * *
14765442 GCTGCCGATCCTGCTATCGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATAT
561 GCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** * * * *
14765507 GCCTAAGCCAATCGA-TGAA-A-CGAGCGGGC-AGA-CGGGCACTGCGTCGGCCAGAGAGACGGG
626 GCCTAAGCCAACCGACAAAAGAGCGGGCGGGCGCGAGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
14765567 ATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTACATGC
691 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
** *
14765632 CAATGGTATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
756 CAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
14765697 GGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC--CATATTTTGT
820 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAACTTTTTGCGGTTCGGGAT-TTTTTT
14765760 AAAAT
883 AAAAT
* ** *
14765765 TTTTTCGGAAAGAGTTTTGAACCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
14765830 C-AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTC
66 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14765894 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
* * * ** *
14765959 GTGAGTTCTCGAGGTTTGGTGGGGGATAGGGGGCTAATATAAGGGTGAAGTACCAGCACCCATCA
195 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * **
14766024 CACATCATGTACGCACACCCCCC--CAGCCCCTTATCGTCGGAACCCCAATG-C-CGTCGGTCAG
260 CACATCATGTGCGCACACCCCCCGGC-CCCCCCGATCGTCGGAACCCCAATGTCAC-T-GGTCAG
* *
14766085 GTTCTCTGGCGATGCTCCGTCGATGGTGCACCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
322 GTTCTC---C---G----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
14766150 AGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGCAATGAACAT-CGTA
376 AGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAAC-TCCGTA
* * * * *
14766214 TGCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCACTCA
440 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * **
14766279 GCCGACCAGAGGGGCGGGATAG-GCAAGCCGGGGATCTGATCGGGTCCCTCTCTGCGTGCTATCG
505 GCCGGCCAGAGGGGCGGGAT-GCGCAAGCCGAGGATC-GATCGGGTCCCCCTCTGCGTGCTGCCG
* *
14766343 ATCCTGCTGCCGCAACCCTCAATCTGGTCTGATCATTAGACTGGGAATGAACTCCGTATGCCTAA
568 ATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATC-TTAGACTGGGAATGAACTCCGTATGCCTAA
* * **
14766408 GCCAACTGAC-GAA-A-C--G-AAGCG-GA-CGGGCACTACGCCGGCCAGAGAGACGGGGATGGC
632 GCCAACCGACAAAAGAGCGGGCGGGCGCGAGCGGGCACTACGCCGGCCAGAGAGAC-GGGAT-GC
* * * * * * *
14766465 GTAAGCTGTGTATTGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGTATGTC-AT
695 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
14766529 GCCA-TTTATGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCA
760 GCCATTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
14766592 AAACAACTCGTTTTCTATTTTTCATGATTTTTGAACTTTTTGCGGTTCGGGATTTTTTTAAAAT
824 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAACTTTTTGCGGTTCGGGATTTTTTTAAAAT
* * *
14766656 TTTTTTGGAAGGTA-TTTTGTCCCCAAACTTTGGTAGACGT-AGTCCTTGTATTTTTTTTGGCAT
1 TTTTTCGGAAGG-AGTTTTGGCCCCAAAC-TTGGTAGACGTGA-TCCTTGTATTTTTGTTGGCAT
14766719 GCCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTG-GACCATTTGAAAAAAGTGT
63 G-CACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
14766783 CCCCATTTCAGACACTTTAATGGCTA-TCGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAG
127 CCCCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
14766847 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
191 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
14766912 ATCGCACATCATATGCGCACACCCCCCGGCCCCCCCGATCGTCGTAACCCCAATGTCACTGGTCA
256 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCACTGGTCA
*
14766977 GGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACTAGCACATGCCCGAGCCCAGCAT
321 GGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * *
14767042 GTGCTGCCGCAACCCTCAGTTTGATCCGATCTTAGACTGGGAATGAACCCCATATGCTTAGACTG
386 GTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
14767107 GGAATGAACTCCCTATGCCTAAGTTAACCCACAAAACGAGCGTGCGGGCGGCTCAGTCGGACCAG
451 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGG-CCAG
* * * * * *
14767172 AGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCTTCTGCATGCTGTC-ATCCTACTGCC
514 AGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * * *
14767236 GCAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCTAACCGACAA
579 GCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
* * * *
14767301 AATGAGCGGGCGGGCGGGCGAGCGGGCACTACACCGGCCAGAGAGGCGGGACGCACAAGCCGTGG
644 AA-GAGCGGGCGGGC--GCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
***
14767366 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
706 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTAT
*
14767431 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGT
770 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
14767496 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGA-TTTTTTAACAT
835 TTTCTATTTTTCACGATTTT-TAAACTTTTTGCGGTTCGGGATTTTTTTAAAAT
* * * *
14767549 TTTCTT-GGATGGAGTTTTGGCCCCAAACTTGGTAGACTTGGTCCTTGTATTTTTGTTGGCAGGC
1 TTT-TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
14767613 ACAAAAAAATTCAGCCAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
65 ACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
14767678 CATTTCAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCACAAATGCTCTTTAAGGGAG
130 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-G
* * *
14767743 TGTGAGTTCTTGAGGTTTAATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
194 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
14767808 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGTAACCCTAATGTCACCGGTCAGG
259 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCACTGGTCAGG
* * * * *
14767873 TTCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACAAGCCTGAGCCCAGCATGT
323 TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
14767938 GCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACTAGG
388 GCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * * *
14768003 AATGAACTCCCTATGCCTAAGTCAACCCATGAAACAAGCGTGCTGGCACTCAACCGGCCAGAGGG
453 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * *
14768068 GCAGGATGCGCTAGCCGAGGATCGATCGGGT--CCC-C--C-T-CT----A-CGTGCTGCCGCAA
518 GCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* * * * * *
14768121 CCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGACAACC-AAAGAAAC
583 CCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACA-AAA-
* * * *
14768185 GAGCGGGCGGGCGGGCGAGCGGGCACTACACCGACCAGAGAGGCGGGATGCGCAAGCTGTGGATC
646 GAGCGGGCGGGC--GCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
14768250 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
709 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTATGGC
14768315 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
773 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
14768380 CTATTTTTCATG-TTTTTCAAAACTTTTTACGGTTCGAGA-TTTTTTAAAAT
838 CTATTTTTCACGATTTTT--AAACTTTTTGCGGTTCGGGATTTTTTTAAAAT
* ** *
14768430 TTTTTCGGAAGGAGTTTTGGCCCCAAACATCATAGACGTGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
14768495 CAAAAAAATTCATCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAATGTCCCC
66 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
14768560 ATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGT
* * * * * *
14768625 GTGAGTTTTCGAGGTTTGATAAGGGATAGGGGGCCAATGTAAGGGCCAAGTACTAGCATCCAATT
195 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATC
* * * * ** * ** * *
14768690 TCACATCATCTGCGCACAACCCTCGGCCCTTCCGATCGTCGAAACCCTGATG-CAGTCGTCAGGT
259 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCACTGGTCAGG-
* * **
14768754 TCTCCGGCGATGCTCGGCGATGGTGCCCCAACGAAGAAAAATAC-GCATGAGCACATGCCCGAGC
323 T-T----C--T-C-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
14768818 CCAGCATGTGCTACCGTAACCCTCAGT-CTAGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
379 CCAGCATGTGCTGCCGCAACCCTCAGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
14768882 TTAGACT-AGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG-ACGGGCGCTCAGCC
443 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
14768945 GGCCATAGGGGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCATGTTGCCGATCCT
508 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* *
14769010 GCTGCCGCAACCCTC-GATCTGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
573 GCTGCCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14769074 CCGACGAAACGAGAGAGTGGGCAGACGGACGGGTAGGCTGGCGGGCGCTATGTCGGCCAGAGAGA
637 CCGAC--AA--A-AGAGCGGGC-G--GG-CGCG-A-----GCGGGCACTACGCCGGCCAGAGAGA
* * *
14769139 CAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG-GGGTTTAGGCACATCTTCATATTTCTTC
687 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
14769203 TTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTTC-CGTGAAGT
752 ATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAGT
* * * *
14769267 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTGCGGTTCAGGATTT
815 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-TAAACTTTTTGCGGTTCGGGATTT
*
14769332 TTTTTAAAT
879 TTTTAAAAT
* *
14769341 TTTTTCGGAAGGATTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
14769406 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14769471 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGTGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGT
* *
14769536 GTGAGTTGTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT--
195 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * ** * **
14769599 CACACCATGTGCGCACACCCCCCGGCCCCACCAATCGTCGGAACCTAAATGTCGCCAGTCAGGTT
260 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCACTGGTCAGGTT
14769664 CTCCAGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
325 CT-C--CG--G---C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
14769729 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
379 CCAGCATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
14769790 CGAATAAGCC
Statistics
Matches: 5789, Mismatches: 664, Indels: 457
0.84 0.10 0.07
Matches are distributed among these distances:
856 5 0.00
857 1 0.00
858 1 0.00
859 2 0.00
861 1 0.00
862 3 0.00
864 1 0.00
865 1 0.00
866 1 0.00
867 54 0.01
868 22 0.00
869 19 0.00
870 67 0.01
871 67 0.01
872 53 0.01
873 49 0.01
874 50 0.01
875 11 0.00
876 4 0.00
877 137 0.02
880 16 0.00
881 593 0.10
882 466 0.08
883 33 0.01
884 31 0.01
885 176 0.03
886 13 0.00
887 54 0.01
888 43 0.01
889 86 0.01
890 235 0.04
891 137 0.02
892 441 0.08
893 447 0.08
894 494 0.09
895 317 0.05
896 85 0.01
897 75 0.01
898 237 0.04
899 283 0.05
900 283 0.05
901 12 0.00
902 5 0.00
903 10 0.00
904 5 0.00
905 4 0.00
906 4 0.00
907 4 0.00
908 42 0.01
909 8 0.00
910 169 0.03
911 431 0.07
912 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCACTGGTCAGGTTC
TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCC
TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAGAGCG
GGCGGGCGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CACGATTTTTAAACTTTTTGCGGTTCGGGATTTTTTTAAAAT
Found at i:14768897 original size:25 final size:26
Alignment explanation
Indices: 14768855--14768906 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
14768845 CTAGTTCGAT
*
14768855 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14768881 CTTAGACT-AGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14768906 C
1 C
14768907 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14770520 original size:26 final size:26
Alignment explanation
Indices: 14770484--14770536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14770474 TTGGTTCGAT
*
14770484 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
14770510 CTTAGACTGGGAATGAGGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14770536 C
1 C
14770537 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14771584 original size:899 final size:897
Alignment explanation
Indices: 14769746--14771913 Score: 3067
Period size: 899 Copynumber: 2.4 Consensus size: 897
14769736 GTGCTGCCGC
* * * ** *
14769746 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGAATAAGCCAACCAACGAAA
1 AACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
*
14769811 CGAGCGGGCAGACGGGCATGCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
66 CGAGC-GG--G-CGGGC-TGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
14769875 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATG
125 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
*
14769940 GCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
190 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** *
14770005 TTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTGT-GGGATTTTTTATTATTTTTTCGAAAGG
255 TTCTATTTTTCACGATTTTTGAAACTTTTTGC-GT-TCGGGATTTTTTAAAATTTTTTCGGAAGG
*
14770069 AGTTTTGGCCCCAAACTTGGTAGACGTGCTCCTTGTATTTTTGTTGGCATGCACAAAACAATTTA
318 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTA
* *
14770134 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACT
383 ACTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACT
*
14770199 TTAATGGCTATTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCA
448 TTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCA
* *
14770264 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
513 GGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGC
* * * * * *
14770329 GTACCCCCCCCGGCCCCCCCGATCGCTGGAACCCTAATGCCGCAGGTCAGGTTCTCTAACGATGC
578 GCACCCCCCCCGGCCCCCCCGATCGCTCGAACCCCAATGACGCAGATCAGGTTCTCCAACGATGC
* * * * * *
14770394 TCCGACGATGGTACCCCGATGAAGAAAAAAGTGGCACCAGAACATGCCCGAGCCCAGCATGTGTT
643 TCCGACGATGGTACCCCAACGAACAAAAAAGCGGCAACAGAACATGCCCGAGCCCAGCATGTGCT
* * * * * *
14770459 ATCGCAACCCTCGGTTTGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
708 ACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAAT
** * * * * * *
14770524 GAGGTCCGTATGCCAAAGTCAACCCATGAAACGAGTGTGTGAGCGCTTAGCCGGCCAGGGGGGCG
773 GAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCAGCCAGAGGGGCG
* * *
14770589 GGATGCACAAGCCAGGGATTGGTCGGGTCCCCCTCTGGTTGCTGCTGTTCCTACCACTGT
838 GGATGCAAAAGCCAGGGATCGGTCGGGTCCCCCTCTGGTTGCTGCTGATCCTACCACTGT
* * * *
14770649 AACGCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGATGAAA
1 AACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * * *
14770714 TGAGCGGGTGGGCTGATGGGCCCTACGCTGACCAGAGAGACGGGATTCGCAAACCGTGGATCGAT
66 CGAGCGGGCGGGCTG-CGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
14770779 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTGGGTGCCAATGCCATTTTTATGGCTTG
130 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
*
14770844 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTA
195 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * *
14770909 TTTTTCACGATTTTCAAAACTCTTTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
260 TTTTTCACGATTTTTGAAACTTTTTGCG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
14770974 GGCCCCCAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAA-AATTTCAACTAA
324 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTT-AACTAA
*
14771038 AAACTCGAAGTG-ACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAAT
388 AAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAAT
* * *
14771102 GGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTT
453 GGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTT
** *
14771166 GATGAAGGATAGGGGGCCAATATAAGGTTCAACTACCAGCACCCATCGCACATCTTGTGCGCACA
518 GATGAAGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCG--CA
* * * * * * *
14771231 CCCCCCCCGGCCCCCCCGATTGTTCGAACCCCAATTATGCCGATCAGGTTCTCCGATGATGCTCC
581 CCCCCCCCGGCCCCCCCGATCGCTCGAACCCCAATGACGCAGATCAGGTTCTCCAACGATGCTCC
** * * *
14771296 GACGATGGTGTCCCAACGAACAAAAATA-CGGCAACAGCACATGCTCGAGCCCAGCATGTGCTGC
646 GACGATGGTACCCCAACGAACAAAAA-AGCGGCAACAGAACATGCCCGAGCCCAGCATGTGCTAC
*
14771360 CGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGA
710 CGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGA
* * *
14771425 ACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCAGCCAGAGGGGCGGG
775 ACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCAGCCAGAGGGGCGGG
* * * *
14771490 ATGCAAAAGTCGGGGATCGG-CTGGGTCCCCCTCTGCG-TGCTG-TCGATCCTGCTACTGT
840 ATGCAAAAGCCAGGGATCGGTC-GGGTCCCCCTCTG-GTTGCTGCT-GATCCTACCACTGT
* ** *
14771548 AACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAATGACAAAA
1 AACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
14771613 CGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGGGCGGGC-TGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * ** *
14771678 AGGGTGGTAGGTGGGTTTAGGCTCATCTTCGTATTTCTATGTGCCAATGCCATTGTTATGGCTTG
130 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
14771743 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCGA
195 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
14771808 TTTTTCACGATTTTTGAAAGTTTTTACCGTTCAGGATTTTTTCAAATTTTTTCGGAAGGAGTTAT
260 TTTTTCACGATTTTTGAAACTTTTT-GCGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
14771873 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
324 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
14771914 TAGACGATGG
Statistics
Matches: 1118, Mismatches: 134, Indels: 30
0.87 0.10 0.02
Matches are distributed among these distances:
897 77 0.07
898 100 0.09
899 873 0.78
900 7 0.01
902 2 0.00
903 59 0.05
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (897 bp):
AACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCTGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTGCGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTAACTAAAAA
CTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGC
TACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGAT
GAAGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACCCCC
CCCGGCCCCCCCGATCGCTCGAACCCCAATGACGCAGATCAGGTTCTCCAACGATGCTCCGACGA
TGGTACCCCAACGAACAAAAAAGCGGCAACAGAACATGCCCGAGCCCAGCATGTGCTACCGCAAC
CCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCG
TATGCCAAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCAGCCAGAGGGGCGGGATGCAA
AAGCCAGGGATCGGTCGGGTCCCCCTCTGGTTGCTGCTGATCCTACCACTGT
Found at i:14772666 original size:26 final size:26
Alignment explanation
Indices: 14772614--14772666 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14772604 CCGATCCGAT
*
14772614 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
14772640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
14772666 C
1 C
14772667 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:14773531 original size:26 final size:26
Alignment explanation
Indices: 14773502--14773554 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14773492 CCGGTCCGAT
14773502 CTTAGACTAAGAATCAACTCCGTATG
1 CTTAGACTAAGAATCAACTCCGTATG
** *
14773528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATCAACTCCGTATG
14773554 C
1 C
14773555 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATCAACTCCGTATG
Found at i:14774604 original size:902 final size:897
Alignment explanation
Indices: 14772207--14775327 Score: 4209
Period size: 902 Copynumber: 3.5 Consensus size: 897
14772197 GATGGAGTTA
* * *
14772207 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTTAGCTAC
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
14772272 AAACTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
66 AAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
14772337 TGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGATGTGAGTTCTCGAGGTTT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
* * *
14772401 GATTAGGGAAAAGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACA
195 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACG
* * * * *
14772465 CACCCCCCGG--CCCCTATCGTCGGAACCCCAATACCACCGGTCAGGTTTTTCGGT-GATGCTCC
260 C-CCCCCCGGCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGG-TTCTCGGTCGATGCTCC
* * * *
14772527 GATGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACAAGTCCGAGCCCAACATGTGCTACC
323 GACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * *
14772592 CCAACCC-CTGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGA-ATGCTTAGACTGGGAATG
388 GCAACCCTC-GGTCCAATCCGATCTTAGACTGGGAATGAACTC-CATATGCTTAGACTGGGAATG
* * *
14772655 AACTCCGTATGCCTAAGTCAAGCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGG
451 AACTCCGTATGCCTAAGTCAA-CCACGAAAAGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGG
* * * * *
14772720 GATGTGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTCCCAATCTTGCTGTCGCAACCCT
515 GATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCTTGCTGCCGCAACCCT
* * * *
14772785 TGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG--A-
580 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGACAG
* * * * *
14772847 GCGGACGGGCAGGCGGGCACTACACCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGG
645 GCGGGCGGGCGGGCGGGCACTACGCC-GCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGG
* *
14772912 GTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC-CTTTTATGGCTTGTAA
708 GTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
*
14772976 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTT
773 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TT
* * * * *
14773041 TTCACGATTTTTAAAACTTTTTTACGATTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTT
837 TTCAAGATTTTTAAAA-TTTTTTACGGTTCGAGATATTTTAAAATTTTTTCGGAAGGTGTTT
* * *
14773103 TGGCCCCTAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTTA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
14773168 AAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
14773233 GGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTT
* * *
14773298 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGTGCACG
195 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACG
* * *
14773363 CCACCCCGGCCCCCCGATCGTCGGAATCTCAATGCCGTCGGTCAGGTTCTC---CG--G-T----
260 CCCCCCCGGCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCGGTCGATGCTCCGA
** * * * *
14773418 -GATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACGTGCTCGAGCCCAGCATGTGCTGCCAC
325 CGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
** ** ** * *
14773482 AACCCTCGACCCGGTCCGATCTTAGACTAAGAATCAACTCCGTATGCTTAGACTGGGAATGAACT
390 AACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * * *
14773547 CCGTATGCCTAAGTCAACGCACGGAATGAGCGTGCGGGCGCTCAGTCGACCATAGGGGTGGGATG
455 CCGTATGCCTAAGTCAAC-CACGAAAAGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATG
* *
14773612 CGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTTCGTGCTGCCAATCTTGCTGCCACAACCCTCGG
519 CGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCAATCTTGCTGCCGCAACCCTCGG
* * * * * *
14773676 TTTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACAGGT
583 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG-ACAGGC
* *
14773741 GGGCGGGTGGGCGGGCACTACGCCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGT
647 GGGCGGGCGGGCGGGCACTACGCCG-CCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGT
* * *
14773806 GGTAGGTATGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAAT
710 GGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
14773871 TCATACAATGGTCCCTTAATCCTTCGCGTGAAGTTTCCTGGCAAGACGACTCATTTTCTATTTTC
775 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT-
* ** * * *
14773936 CAAGATTTTTGAAATTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGTGTTT
839 CAAGATTTTTAAAATTTTTTACGGTTCGAGATATTTTAAAATTTTTTCGGAAGGTGTTT
* *
14773995 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGGATGCA-TAAAAAA-TCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * *
14774058 AAACTTGATGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
14774123 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTT
* * * * *
14774188 GATGAGGGATAAGAGGCCAATATAAGGGCCATGTACCACCACCAATCGCACATAATGTGCGCACG
195 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACG
* * * *
14774253 CCCCCTCGGCCCCCCCGATCGTCAGAACCTCAATGCCGTCGGTCATGTTCTTC-GTCGATGCTCC
260 CCCCCCCGG-CCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTC-TCGGTCGATGCTCC
* * *
14774317 AACGATCGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
323 GACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
** * *
14774382 GCAACCCTCGGTCCAATCTAATCCTAGACTGGGAATGAACTCCATATGGTTAGACTGGGAATGAA
388 GCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * * * *
14774447 CTTCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGGCGTTCAGTTGGCCAGAGGGGTGGGA
453 CTCCGTATGCCTAAGTCAAC-CACGAAAAGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGA
* *
14774512 TGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
517 TGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCTTGCTGCCGCAACCCTCG
* * *
14774577 GTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTCAGCCAACCGACGAAATGAGCGGG
582 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA-CAGG
* * * * * * *
14774642 CGGGCGGGCGAGCAGGCACTATGCCTGGCAGAGAGACGAGATTCGCTAGCCGCGGATCGATAGGG
646 CGGGCGGGCGGGCGGGCACTACGCC-GCCAGAGAGACG-GATGCGCAAGCCGTGGATCGATAGGG
* * *
14774707 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGTGTGCCAATGCAATTTTTATGGCTTGTAA
709 TGGTAGGTGTGTTTAGGCACATCTTCATA-TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
*
14774772 ATTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTT
773 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TT
* ** * *
14774837 TTCAGGATTTCCAACACTTTTTACGGTTCGAGATATTTTAAAATTTTTTCGGAA-GTAGTTT
837 TTCAAGATTTTTAAAATTTTTTACGGTTCGAGATATTTTAAAATTTTTTCGGAAGGT-GTTT
* * *
14774898 TGGCCCTAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
14774963 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
14775028 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTG
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTG
* * * *
14775093 ATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACAC
196 ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-G
* * * * *
14775158 CCCCCCCGATCCCCCCAATCATTGGAA-CTCCAATGCCGCCGGTCAAGTTCTCTGG-CGATGCTC
260 CCCCCCCG-GCCCCCCGATCGTCGGAACCT-CAATGCCGCCGGTCAGGTTCTC-GGTCGATGCTC
* * * * *
14775221 CGGCGATGGTGCCCTGACGAAGATAATTATGC--CACCAGCACATGCCCAAGCCTAGCATGTGC-
322 CGACGATGGTGCCCTGGCGAAGA-AA-AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
14775283 AGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACT
385 A-CCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACT
14775328 TCGTATGTGG
Statistics
Matches: 1947, Mismatches: 232, Indels: 83
0.86 0.10 0.04
Matches are distributed among these distances:
887 1 0.00
888 270 0.14
889 1 0.00
890 193 0.10
891 45 0.02
892 187 0.10
893 84 0.04
894 3 0.00
895 87 0.04
896 79 0.04
897 53 0.03
898 38 0.02
899 29 0.01
901 2 0.00
902 357 0.18
903 179 0.09
904 93 0.05
905 239 0.12
906 3 0.00
907 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACGC
CCCCCCGGCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCGGTCGATGCTCCGAC
GATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
ACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCACGAAAAGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCG
CAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCTTGCTGCCGCAACCCTCGGTCT
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGACAGGCGGGC
GGGCGGGCGGGCACTACGCCGCCAGAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGTGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCAAGATT
TTTAAAATTTTTTACGGTTCGAGATATTTTAAAATTTTTTCGGAAGGTGTTT
Found at i:14776046 original size:26 final size:26
Alignment explanation
Indices: 14776010--14776062 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14776000 TTGATCTGAT
14776010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14776036 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14776062 C
1 C
14776063 CTAACTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14776941 original size:26 final size:26
Alignment explanation
Indices: 14776912--14776963 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14776902 CGGTCTGATA
*
14776912 TTAGACTGGGAATCAACTCTGTATGC
1 TTAGACTGGGAATCAACTCCGTATGC
*
14776938 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATCAACTCCGTATGC
14776964 CTAACTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCGTATGC
Found at i:14777671 original size:26 final size:26
Alignment explanation
Indices: 14777642--14777694 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14777632 CTGGTCCTAT
*
14777642 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14777668 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14777694 C
1 C
14777695 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14777691 original size:731 final size:732
Alignment explanation
Indices: 14776282--14777767 Score: 2221
Period size: 731 Copynumber: 2.0 Consensus size: 732
14776272 GCTAGAGAGA
* * * *
14776282 CGGGATACGCAAGCTGTGGATTGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTCTG
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTG
*
14776347 CATGCCAATGCCATTTTTATCACTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGT
66 CATGCCAATGCCATTTTTATCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* ** *
14776412 TTCAAGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTAAAACTTTTTGAGGTTCGAGATTT
131 TTCAAGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTAAAACTTTTTGAGGTTCGAGACTT
* * * *
14776477 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTGTTTTTCTT
196 TTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTT
*
14776542 GGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
261 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
14776607 GTGTCCCCATTTCAGACACTTTAATGTCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT
326 GTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
14776672 AAGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCA
391 AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAACTACCAGCA
* *
14776737 CCCATCGCACATCATGTGCGCACACCCCCCCATCCCCCCGATCGTTGGAACCCCAAAGCCGTCGG
456 CCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCGTCGGAACCCCAAAGCCGTCGG
* * * ** * *
14776802 TTAGGTTTTTCGGTGGTGCCCCGACGATGGTGCTCCAGCGAAGAAAAATGCGGCACCAGCACATG
521 TCAGGTTCTCCGACGATGCCCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATG
* * *
14776867 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATTCGGTCTGATATTAGACTGGGAATCAACTCT
586 CACGAGCCCAGCATGTGCTACCACAACCCTCGATTCGGTCTGATATTAGACTGGGAATCAACTCT
* * * * *
14776932 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTAAACCCACGAAACGAGCGTGCGGGCGC
651 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTAAACCCACAAAACAAGCATACGGGCAC
14776997 TTAGCCGGCCAAAGCGG
716 TTAGCCGGCCAAAGCGG
* * *
14777014 TGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTT-TT
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTG
** *
14777078 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGT
66 CATGCCAATGCCATTTTTATCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * * *
14777143 TTCATGGCAAGACGACTCGTTTTCTATTTTTTACAATTTTTGAAACTTTTTGTGGTTCGGGACTT
131 TTCAAGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTAAAACTTTTTGAGGTTCGAGACTT
14777208 TTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGT-GAACGTGATCCTTGTATTTTTCT
196 TTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTCT
* *
14777272 TGGCGTGCACAAAAAAATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
260 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
14777337 AGTATCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTTAAATGCTCTT
325 AGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
14777402 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGG-CAAGTACCAG
390 TAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAACTACCAG
* * * *
14777466 CACCCATCGCACATCATGTGTGCACACCCCCCCCGGCCCCCTATCGTCGGAACCCCAATA-CCGT
454 CACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCGTCGGAACCCCAA-AGCCGT
** * * *
14777530 CGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCAC
518 CGGTCAGGTTCTCCGACGATGCCCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCAC
* * * * *
14777595 ATGCATGAGCCCAGCATGTGCTATCACAACCCTCG-GTCTGGTCCT-ATCTTAGACTGGGAATGA
583 ATGCACGAGCCCAGCATGTGCTACCACAACCCTCGATTC-GGT-CTGATATTAGACTGGGAATCA
* *
14777658 ACTCCT-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATAC
646 ACT-CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTAAACCCACAAAACAAGCATAC
* *
14777722 GGGCACTTAGCCGGCCAGAGGGG
710 GGGCACTTAGCCGGCCAAAGCGG
*
14777745 CGGGATGCGCAAGCCGGGGATCG
1 CGGGATGCGCAAGCCGTGGATCG
14777768 GTCGAGTCCC
Statistics
Matches: 675, Mismatches: 73, Indels: 13
0.89 0.10 0.02
Matches are distributed among these distances:
730 3 0.00
731 563 0.83
732 109 0.16
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (732 bp):
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTG
CATGCCAATGCCATTTTTATCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCAAGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTAAAACTTTTTGAGGTTCGAGACTT
TTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTT
GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAACTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCGTCGGAACCCCAAAGCCGTCGG
TCAGGTTCTCCGACGATGCCCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATG
CACGAGCCCAGCATGTGCTACCACAACCCTCGATTCGGTCTGATATTAGACTGGGAATCAACTCT
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTAAACCCACAAAACAAGCATACGGGCAC
TTAGCCGGCCAAAGCGG
Found at i:14777893 original size:12 final size:12
Alignment explanation
Indices: 14777872--14777908 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
14777862 ACCGACGAAA
*
14777872 CGAGCAGGCGGG
1 CGAGCGGGCGGG
14777884 CGAGCGGGCGGG
1 CGAGCGGGCGGG
14777896 CGAGCGGGCGGG
1 CGAGCGGGCGGG
14777908 C
1 C
14777909 ACTATGCCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.11, C:0.27, G:0.62, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:14778408 original size:26 final size:26
Alignment explanation
Indices: 14778372--14778422 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14778362 TGGTCTGATC
*
14778372 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
14778398 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14778423 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:14778981 original size:716 final size:720
Alignment explanation
Indices: 14777592--14779025 Score: 2019
Period size: 716 Copynumber: 2.0 Consensus size: 720
14777582 GTGGCACCAG
* * * *
14777592 CACATGCATGAGCCCAGCATGTGCTATCACAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATG
1 CACATGCACGAGCCCAGCATGTCCTACCACAACCCTCAGTCTGGTCCTATCTTAGACTGGGAATG
* *
14777657 AACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATAC
66 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACAAGCATAC
* * **
14777722 GGGCACTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTTTATGT
131 GGGCACTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGTCGAGTCCCCCTCTACAT
* * *
14777787 GCTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTAT
196 GCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTAT
* *
14777852 GCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGAGCGGGCGGGCGAGCGGGCGGGCACTATGCC
261 GCCTAAGCCAACCGACGAAAC-AGCA-------GAGCGGGCGGGCGAGCAGGCGGGCACTACGCC
* *
14777917 AGCCAGAGAGACGGGATGCACAAGATGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTT
318 AGCCAGAGAGACGGGATGCACAAGACGTGGATCGATAGGGTGGTAGGTGGCTTTACGCACATCTT
* *
14777982 TATATTTTTGCATGCCAATGCTATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
383 TATATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * **
14778047 CAAGTCAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTGTGAAACTTTTTGCGG
448 CAAGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTGTGAAACTTTTTACCA
*
14778112 TTCGAGATTTTTTTAAATTTTTTCGGCAAGAGTTTTCGCCCCAAACTTAGTAGACATGATCCTTG
513 TTCGAGATTTTTTAAAATTTTTTCGGCAAGAGTTTTCGCCCCAAACTTAGTAGACATGATCCTTG
14778177 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
578 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
14778242 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTGATGCCTACTGGCAGCAAAGCTGTAAAATCTCC
643 TTTGAAAAAAGTGTCCACATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCT-C
14778307 AAATACGGAGCCAA
707 AAATACGGAGCCAA
* * *
14778321 CACATGCCCGAGCCCAGCATGTCCTACCGCAACCCTCAGTTTGGT-CTGATCTTAGACTGGGAAT
1 CACATGCACGAGCCCAGCATGTCCTACCACAACCCTCAGTCTGGTCCT-ATCTTAGACTGGGAAT
* * ** * *
14778385 GAACTTCGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTA
65 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACAAGCATA
* * * *
14778450 CGGGCGCTCT-GCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGTCGGGTCCCTCTCTGC
130 CGGGCACT-TAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGTCGAGTCCCCCTCTAC
* * *
14778514 ATGCTGCCGATCTTGCTGCCACAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTTCG
194 ATGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCT-ATCTTAGACTGGGAATGAACTCCG
** *
14778578 TATGCCTAAGCCAACCGTTGAAA-TG-A-A-CGGGCGGGCGAGCAGGCGGGCACTACGCCAGCCA
258 TATGCCTAAGCCAACCGACGAAACAGCAGAGCGGGCGGGCGAGCAGGCGGGCACTACGCCAGCCA
* *
14778639 GAG-GACGGGATGCGCAAGCCGTGGATCGATAGGG-GGATAGGTCGG-TTTACGCACATCTTTAT
323 GAGAGACGGGATGCACAAGACGTGGATCGATAGGGTGG-TAGGT-GGCTTTACGCACATCTTTAT
** * * *
14778701 ATTTCTGTGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
386 ATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAA
* * * * *
14778766 GTGAAGTTTCATGGCGAGATGACTCGTTTTTTATTTTTCACGATTT-TGGAAAGTTTTTACCATT
451 GTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTGT-GAAACTTTTTACCATT
* * * * * *
14778830 CGGGATTTTTTAAAATTTTTTTGG-AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
515 CGAGATTTTTTAAAATTTTTTCGGCAA-GAGTTTTCGCCCCAAACTTAGTAGACATGATCCTTGT
*
14778894 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCAT
579 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
14778959 TTGAAAAAAGTGTCCACATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
644 TTGAAAAAAGTGTCCACATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAA
14779024 AT
709 AT
14779026 GCTCTTTAAG
Statistics
Matches: 629, Mismatches: 69, Indels: 28
0.87 0.10 0.04
Matches are distributed among these distances:
715 10 0.02
716 333 0.53
717 37 0.06
718 1 0.00
726 1 0.00
727 1 0.00
728 4 0.01
729 241 0.38
730 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (720 bp):
CACATGCACGAGCCCAGCATGTCCTACCACAACCCTCAGTCTGGTCCTATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACAAGCATAC
GGGCACTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGTCGAGTCCCCCTCTACAT
GCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACAGCAGAGCGGGCGGGCGAGCAGGCGGGCACTACGCCAGCCAGAG
AGACGGGATGCACAAGACGTGGATCGATAGGGTGGTAGGTGGCTTTACGCACATCTTTATATTTC
TGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTCAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTGTGAAACTTTTTACCATTCGAGAT
TTTTTAAAATTTTTTCGGCAAGAGTTTTCGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCACATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATACGGA
GCCAA
Found at i:14779308 original size:26 final size:26
Alignment explanation
Indices: 14779279--14779331 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14779269 CCGGTCCAAT
* *
14779279 CTTAGACTGTGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14779305 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14779331 C
1 C
14779332 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14780227 original size:26 final size:26
Alignment explanation
Indices: 14780176--14780228 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14780166 CCGGTCCAAT
*
14780176 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCATATG
*
14780202 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTACACTGGGAATGAACTTC-ATATG
14780228 C
1 C
14780229 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCATATG
Found at i:14780998 original size:26 final size:26
Alignment explanation
Indices: 14780962--14781014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14780952 CTGGTCTGAT
*
14780962 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
14780988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
14781014 C
1 C
14781015 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:14782780 original size:26 final size:26
Alignment explanation
Indices: 14782744--14782795 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14782734 CTGGTCTGAT
14782744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14782770 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14782796 GCTAAGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14783664 original size:26 final size:26
Alignment explanation
Indices: 14783627--14783677 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14783617 CAGTCCGATC
* *
14783627 TTAGACTAGGAATGAACTTCGTATGG
1 TTAGACTAGGAATAAACTCCGTATGG
*
14783653 TTAGACTGGGAATAAACTCCGTATG
1 TTAGACTAGGAATAAACTCCGTATG
14783678 CTTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATAAACTCCGTATGG
Found at i:14785432 original size:26 final size:26
Alignment explanation
Indices: 14785396--14785446 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14785386 GGTCCGATCG
*
14785396 TAGATTGGGAATGAACGCCGTATGCT
1 TAGACTGGGAATGAACGCCGTATGCT
*
14785422 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACGCCGTATGC
14785447 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACGCCGTATGCT
Found at i:14787993 original size:869 final size:872
Alignment explanation
Indices: 14780319--14791119 Score: 11777
Period size: 869 Copynumber: 12.3 Consensus size: 872
14780309 CGGGCAGGCA
* * * * * *
14780319 GGCGGGCACTACGTCGGCCTGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGCGG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14780384 GTTTAGGCACATCTTCATATTTCTGGATGCCAATGCCATTTTTATGGCTTATAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
14780449 GGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * ** *
14780514 TGAAA-TATTTTGCGGTTCGGGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGACCCAAACTTG
196 TGAAACT-TTTTACGGTTCGGG-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
14780578 GCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAACCT-AAAACTCGAAGTGT
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGT
* * * * *
14780642 ACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCAATTCCAGACACTTGAATGGCTACTGACAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14780707 AAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGATCTCGAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
14780772 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCGCCA
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * **
14780837 CGATCGTCAGAACGTCAATGCCGTCGGTCAGG-----C-----T-CTCCGACGATGGTGCCCCGA
518 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
* *
14780891 TGAAGAAAAATGCGGCACCAGCACATGCCCTAGCCCAGCATGTGCTACCGCAACCCTCGATCTGG
583 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-CG-T-TGG
*
14780956 TCTGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
644 TC----C---GA----G--A-TAC-T-G-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * * * *
14781021 CAACCCATGAAATAAGCGTGCGGGCGCTCAGCCGGCTACAGAGGCGAGATGCGCAAGCTGGGGAT
692 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * *
14781086 CAGTCGGGTCCCCTTATGCGTGCTGCCGATCCTGCTGCCATAACCCTCAGT-TCGGTCTGATCTT
757 CGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCT-GGTCTGATCTT
* *
14781150 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGG
821 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGGGC--G
* * *
14781204 CGAGCGGGCACTATGCTGGCCAGAGAGACGGGATGCCCAAGCCATGGATCGATAGGGTGGTAGGT
1 -G-GCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
14781269 GGGTTTAGGCACATCTTCGTATTTCTACATGCCACTGCCCTTTTTATGGCTTGTAAATTCATACA
64 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
14781334 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATT
129 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
14781399 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTT
194 TTTGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
* * *
14781464 GGTAGACGTGATCCTTGTATTTTCGTTGGCATGCATAAAAAAATTTAGCTAAAAACTCG-AGTGT
258 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
14781528 ACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14781593 AAACCTATAAAATCTCAAATGC-CTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATA-
388 AAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
14781656 GGAGCCAATATAAGGGCCAAGTACCAACATCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
452 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCC
* * * * *
14781721 CCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCTGAAGATGCTCCGACGATGGTGCCCC
516 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCC
** ** * * *
14781786 GGTGAAGAAAAATATGACACCAGCACATGCCCGAGCCTAGCATGTGCTACCACAACCCTCAGTTC
581 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C-GTT-
* * * *
14781851 GGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGTGAATGAACTCTGTATGCCTAA
642 -G---G-TC-----C-GAG-AT--ACT---GATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
14781916 GTCAACCCATGAAACGAGCGTGCGGGCGCTTAACCGACCAGAGGGGCGAGATGCGCAAGCCGGGA
690 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* ** * *
14781981 ATCGGTCGGGTCCCCCTCTGCGTGC-AGCCAATCCTGCTGCCACAACCCTTAGTCTAGTCCGATC
755 ATCGGTCGGGTCCCCCTCTGCGTGCTA-CCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATC
* * * * * * **
14782045 TTAGACTAGGAATCCAA--CCG-A---CGAA-ACGAGCG--GGCA--AGCGGGCG
819 TTAGACTGGGAAT-GAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCG
* * *
14782089 GGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14782154 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
14782219 GGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * **
14782284 TGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTTTTTTGGCCCCAAACTTGG
196 TGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* *
14782349 TAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGGAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
14782414 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
14782479 ACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
14782544 GCCAATGTAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGTACACCCCCCGGCCCCCCC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCC
* * ** * * *
14782609 AATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTACCCCGAT
519 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGAC
* * * *
14782674 GAAGTAAAATGCGGCACCAGCACATGCCCAAGCCCAGCAAGTGCTGCCGCAACCCTCGGTCTGGT
584 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C-GT-TGGT
* * *
14782739 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGGCTAAGTT
645 C----C---GA----G-AT--ACT--G-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
14782804 AACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGGGGCGGGATGCGCAAGCCGGGGATC
693 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * ** * *
14782869 GG-CTGGGTCCCCCTGTGTGTGCAACCAATCCTACTATCGCAACCCTCAGTCTGGTCTGATCTTA
758 GGTC-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTA
* * * * *
14782933 GACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAGCAGGTG
822 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCG
* *
14782984 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14783049 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCC-TTTGTTATGGCTTGTAAATTTATACAA
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT-TTATGGCTTGTAAATTCATACAA
* *
14783113 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTCTTCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
14783178 TTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGCAGTAGTTTTGGCCCCAAACTTG
195 TTGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
14783243 GTTG-CGTGATCCTTGTCA-TTTTGTTGGCATGCAAAAAAAAAATCAGCTAAAACCTCGAAGTGT
259 GTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
14783306 GCAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
14783371 AAACCTGTAAAATCTTAAATGCTCTTTAA--TGGAGTGAGTTCT-TAGG-TTGATGA-GGATTA-
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAG
* ** *
14783430 GGGGCCAATATAAGGGCAAAGTATGAGCACCCATCGCACATCATGTGCGCACACCCCTCCCGACC
452 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCC
* * * * *
14783495 CCCACGACCACCAGAACTCCAATGCCGTTGGTCA-G----CCG-T--T-CTCCGACGATGGTGCC
515 CCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCC
* * * * *
14783551 TCGACGAAGAAAAATGCAGCACCAGCACATACCCTAGCCCAGCATGTGCTGCCGCAACCGTCGAT
579 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC--CG-T
* * * * *
14783616 CCAGTCCGATCTTAGACTAGGAATGAACTTCGTATGGTTAGACTGGGAATAAACTCCGTATGCTT
641 ----T--GGTC-----CGA-G-AT--AC-T-G-ATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
14783681 AAGTCAACCCATGAAACGAACGTGCGGCCGCTCAGCCAGCCAGAGGGGCGAGATGCGCAAGCAGG
688 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * ** * **
14783746 GGATCGGTCAGGTCCCCCTCTACGTGCTATCGATCTTGTTACTGCAACCCTCGATCCAGTCTGAT
753 GGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * *
14783811 CCTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAACGA-TAAACGAGCGGGCGGG
818 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGGGC--G
* * *
14783867 CGGCCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGT
1 -GG-C--G--GGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
14783932 AGGTGGGTTTA-ACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
60 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
14783996 TACAATTGTCCCTTAAGCCTCCACGCGAAGTTTCATGGCAAGACGACTCATTTTTCAATTTTTCA
125 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCA
* *
14784061 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGATA-GAGTTTTGGCCCC
189 CGATTTTTGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTTGGA-AGGAGTTTTGGCCCC
* * * *
14784125 AAACTTAGTAGACATGATCCTTGTATTTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTT
252 AAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
14784189 GAAGTGTACAAGATTTTTTGACCATTTG-AAACAGTGTCCCCATTTAAGACACTTTAATGGGTAC
316 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
14784253 TGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAACGGGGTGTGAGTTCTCAAGGTTTGATGAG
381 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
14784318 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACAT-ATGTGCGCACACCCGCC
446 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
** * * * * * ***
14784382 GGCCCCTCCGATCATCGAAACCACAATGCTGCCAGTCAGGTTCTCCGGCAATGCTCC-AGCGATG
511 GGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGA-CGATG
** * * * * *
14784446 GTGCCCCGACGAAGAAAAATTTGCCACCAGCACACGCCCAAGCCCAGTATGTGCTACCGTAACCC
574 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
* * * * *
14784511 -TCGGTCCG-G--CCTGAT-CTTAGA-TATGGAATGAACTCTGTATGCCTAAGTCAACGCACGAA
639 GTTGGTCCGAGATACTGATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
14784570 ATGAGCATGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCC
703 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * ** * *** * * *
14784635 CCTTCTGGGTGCTGTCGATCCTGCTGCTACAATTGTTGG-CTCGAT-TCAATCTTAGACTGGGAA
768 CCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCT-GGTCT-GATCTTAGACTGGGAA
* * * *
14784698 TGAACTCCGTATACCTAAGCCAACAGATGAAACAAGCGGACGGTCGGGAG
831 TGAACTCCGTATGCCTAAGCCAACCGACG--A-AA--GGA--G-CGGGCG
* ** * *
14784748 GGCGGGCACTA-GTCGGTTAGAGAGACGGGATGCGCAAGCGGTTGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
14784812 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
14784877 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
14784942 TTACACTTTTTACGGTGCGAGATTTTTTAAAAGTTTTTTGGAAGGAGTTTTGG---C---CTTGG
196 TGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * * **
14785001 CAGACATGATCTTTGTGTTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCTTAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
14785066 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
14785131 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
14785196 GCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGTGCACAGCCCCTCC-ACCCCC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCC
** * * ** *
14785260 CGATCATCGGAAGCCCAATGCCG-CTGGTTAGGTTCTCCGATGATGCTCCGGTGATCGTGCCCCG
518 CGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCG
* * * * **
14785324 ACGAAGAAAAATGTGACACCAACACATGCCCAAGCCCAGC--GTGCTGTCGCAACCCTCGGTCTG
582 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C-GT-TG
*
14785387 GTCCGATCGTAGATTGGGAATGAACGCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
643 GT-C---C---GA----G-AT--A--CTG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
14785452 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCGGGCCAGAGGGGCGGGATGCACAAGCCGGGGA
691 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * *
14785517 TCGGTCGGGTCCCCCTTTGCGTGCTGCCTATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTT
756 TCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTT
* * * *
14785582 AGACTGGGAATAAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCG
821 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A----G-GAGCGGGCG
* * * * *
14785642 GGCGGGCACTATGTCGGCCAGAGGGATGGGATGCGCAAGCCGTGGATCAATAGGGTGGAGAGGTG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG-TAGGTG
* *
14785707 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCCTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
14785772 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTTTATTTTTCATGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * *
14785837 TTGAAACTTTTTGTGGTTCGGGATGTTTTAAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
195 TTGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
*
14785902 CTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
14785967 CAAGATTTTGGGACCATTTGAAAAAATTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
14786032 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
**
14786097 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGTTCCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * ** *
14786162 GATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGC
519 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGAC
* * * ** * *
14786227 GAAGAATAATGCGGCACCAGCACATGCCTGAGCCCAGTATGTGCTATTGCAACCC-TCGGT--GT
584 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGTTGGTCCGA
* * * *
14786289 GGT-CCGAT-CTTAGACTGGGAATGAA---C---T-CC---GTCAACCCACGAAACAAGCGTGCA
649 GATACTGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
** * * * ** *
14786342 GGCGCTCAGCCAACCAGAGGGGCGGGAGGCGTAAGCTGGGGATCGACCGGGTCCCCCTTTGCGTG
714 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * * * * * *
14786407 GTACCAATCCTACTACCGCAACCCTCAGT-TCAGT-TAGATCTTAGACTGGGATTGAACTCCGTA
779 CTACCGATCCTGCTGCCACAACCCTCGGTCT-GGTCT-GATCTTAGACTGGGAATGAACTCCGTA
* * * *
14786470 TGCCTATGCTAACCGATGAAATGA-------
842 TGCCTAAGCCAACCGACGAAAGGAGCGGGCG
* * * *
14786494 -GCGGG-----T--CGG-TAGAGAGACGGGATGCGTAAGCCGTGGATCGAAAGGGTGGTAGGTAG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14786550 GTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
14786615 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTGTATTTTTCACAATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** ** * ** *
14786680 CAAAACTTTTTGGGGTTCAAGAATTTTTAAAATATTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
196 TGAAACTTTTTACGGTTC-GGGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
14786745 TAGACGTGATCCTTCTATTTTTGTTGGCATGCATAAAAAATTTCAGGTAAAAACTTGAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
14786810 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTGGCAACAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * **
14786875 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTATGATGACAGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* ** * *
14786940 GCTAATATAAGGGCCAAGTACCAGCACCCATCTTACAT-ATTTCCGCACACCCCCCTGGCCCACC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCC-CC
* * ** *
14787004 CGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTTTGTTGATGCTCCGACGATGGTGCCCCGA
518 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
* * *
14787069 CAAAGAAAAATGCAGCACCAGCACATGTCCGAGCCCAGCATGTGCTACCGCAACCC-TTGGTCC-
583 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGTTGGTCCG
*
14787132 AG-T-CTGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGC
648 AGATACTGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* ** * ** * * *
14787194 GGGCTCTCAGCCGGCCAGAGGGGTAGGATCCGTGAGCTGGGGATCGGCCGGGTCCCCCTCTACGT
713 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT
* * * *
14787259 GGTACCGATCCTACTACCGCAACCCTCGGTCTGGT-TGCATCTTAGACTGGGAATGAACTCCGTA
778 GCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTG-ATCTTAGACTGGGAATGAACTCCGTA
* * *
14787323 TGCCTATGCCGACCGATGAAAGGAGCGGGCG
842 TGCCTAAGCCAACCGACGAAAGGAGCGGGCG
* * * * *
14787354 TGCGGGCACTATACCGGCCTGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTAG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
14787419 GTTTAGCCACATCTTCATATTTCTGCATTCCAATGCAATTTTTGTGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
14787484 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * *
14787549 TGAAACTTTTTGGGGTTCAGGTGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCTCCAAACTTA
196 TGAAACTTTTTACGGTTC-GG-GTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* *
14787614 GCAGACGTGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
14787679 CAAGATTGTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
14787744 AACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
14787809 GGCCAATATAAGAGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAAACCCCCCGGCACCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * *
14787874 GATCACCGGAACCCCAATGCCGTCGATCAGGTTCTCTGATGATGC-CTTGGCGATGGTGCCCCGA
519 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTC-CGACGATGGTGCCCCGA
* * * * * * *
14787938 CGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATCTGCTGCTGCAACCC-TCGGTCTG
583 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGTTGGTCCG
*
14788002 -G-T-CTGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGC
648 AGATACTGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* *
14788063 GGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAA-CTCGGGGATC-GACTGGGTCCCCCTCTGC
713 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGGTC-GGGTCCCCCTCTGC
* * * * *
14788126 GTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTTATCTTAGATTGGGAATGAACTTCGT
776 GTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
* *
14788191 GTGCCTAAGCCAACTGACGAAATGAGCAGGCGGGCGGGCG
841 ATGCCTAAGCCAACCGACGAAA-G-G-A-----GCGGGCG
* * * * * *
14788231 GGCGGGCATTACGTCGGCCAGAGAGACGGGAAGTGCAAGCCGTGGATCGATAGGGTAGTAGGTGG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
** *
14788296 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
14788361 GGTCCCTTAAGCCTTTACGTGAAGTTTGATGGCAAGACAACTCATTTTTCTATTTTTCATGATTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTT
* * * * *
14788426 TTGAAACTTTTTACGATTCAGGATTTTTAAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTG
195 TTGAAACTTTTTACGGTTC-GGGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
14788491 GTAGACGTGATCCTCGTATTTTTCTTGGCATGCAGAAAACAATTCAGCTAAAAACTCGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
14788556 CAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * ** *
14788621 AACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTTAAGGTTTGATGAGGGATAAGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* ** *
14788686 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCATCGTCCAGGCCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCC
* * * * * *
14788751 CCGATCACCGGAAGCACAATGTCGCCAGTCAGGTTCTCC---GA---T-----GATGGTGCCCCG
517 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCG
**** * * **
14788805 ACGAAGAAAAATATAACACCAGCACATG-TCGAGCCCAGCATCTGCTGTCGCAACCC-TTGGTCC
582 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGTTGGTCC
* * *
14788868 --GAT-CTGAT-CTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATG
647 GAGATACTGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
14788929 TGGGCGCTCAGCTGGCCAGAGGGGCGGGATGTGCAAGCCAGGGTTCGGTCGGGTCCCCCTCTGCG
712 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCG
* * * * * * ** *
14788994 TGCTGCCAATCCTGCTACTATAACCTTTAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTA
777 TGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* *
14789059 TGCCTAAGCCAATCGACGAAACGAGCGGGCGAGCGGG
842 TGCCTAAGCCAACCGACGAAAGGAGC--G-G-GC--G
* * * * *
14789096 TGGACGGGCGGACGGGCAGGCGGGCACAACACCGGTTAGAGAGGCGAGATGCGTAAGCCGTGGAT
1 -GG-CGGGC--AC---TATGCCGG--C--CA---G--AGAGA--CGGGATGCGCAAGCCGTGGAT
* **
14789161 CGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
48 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
14789226 ATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
113 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * *
14789291 TCTCTTTTTCATC-ATTTTCAAAACTTTTTACGGTTCGAGCTTTTTTAAAATTTTTTCGGAAGGA
178 TCTATTTTTCA-CGATTTTTGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTTGGAAGGA
* * *
14789355 GTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAG
241 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
14789420 CTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCTATTTCAAACATTT
306 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
14789485 TAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAA-GGGGTGTGAGTTCTCAA
371 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGA
* *
14789549 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATATGC
435 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
14789614 GCACACCCCCCGACCCCGCCAATCGCTGGAACCCCAATGCCGTCAGTTAGGTTCTCCGGTGATGC
500 GCACACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGC
* * *
14789679 TCCGGCGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
564 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
14789744 GCCGTAA-CC-TCGGTCC--GAT-CTGAT-CTTAGACTGGGAATGAACACCGTATGCCTAAGTTC
629 ACCGCAACCCGTTGGTCCGAGATACTGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG-TC
* * * * * *
14789803 -AGCCACGAAACGAGTGTGCGGGTGCTCAGTCGGCCAGAGGGGCAGGATGTGCAAGCCGGGGATC
693 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * * *** * * * * * * **
14789867 GACCTGGTCACCCTCCATGTCCTACCGATCCTACTGCCGCAACCCACTG-CTCGATCCAATCTTA
758 GGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCT-GGTCTGATCTTA
* * *
14789931 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGACA
822 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCG
* * * *
14789982 GGCGGGCACTACGTCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTATGTGG
1 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
14790047 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
14790112 GGGCCCTTAAGCCTTCACGTAAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * **
14790177 TGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-CCCAAACTTTT
196 TGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
14790241 TAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGGGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
14790306 AAGATTTTGTGATCATTTGAAAAAAGTGTCACCATTTCAAACACTTTAATTGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
14790371 ACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTATGAGTTCTCCAGGTTTGATAAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * ** *
14790436 GCTAATATAAGGGCCAAGTACCACCACCCATCACACATCATGTGCGCACACCCCATGCCCCCCCG
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * ** * ** * * *
14790501 ATCGCTGGAACCCCAAAGCCACCGGTCAGGTTCTCTGGCGATGCTTCGATGATGGTTCCCCGACG
520 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACG
* * *
14790566 AAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCCATCTGGTC
585 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA--C-CCGT-TGGTC
* * *
14790631 AGATCTTAGACCGGGAATGAACTCCTTATGCTTAGACTGGGAATCAACTCCGTATGCCGAAGTCA
646 ----C---GA----G-AT--A---CTGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * ** * * * * *
14790696 ACCCACGAAATGAATGTGCAGACATTCAGCCAGCCAGAGGGTCGGGATGCACAAGCTGGGGAACG
694 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * **
14790761 ATCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGA
759 GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGA
*
14790826 CTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGACGGGCTGACG
824 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A---GG-A----G-C-GG--G-CG
* * * * * *
14790891 GGCAGGCAGGAACTATGCCGGCCGGAGAAACGGGATGCGTAAACCGTGGATCGATAGGGTGCTAG
1 GGC--G--GGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
14790956 GTGGGTTTAGGCACATCTTCATAATTGTACATACCAATGCCATTTTTATGGCTTGTAAATTCATA
62 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14791021 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTAAGGGCAAGACGACTCGTTTTCTATTTTTCACGA
127 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*
14791086 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
192 TTTTTGAAACTTTTTACGGTTCG-GGTTTTTTAA
14791120 TGGCTACTAG
Statistics
Matches: 8498, Mismatches: 1090, Indels: 627
0.83 0.11 0.06
Matches are distributed among these distances:
841 15 0.00
842 399 0.05
843 166 0.02
844 4 0.00
846 2 0.00
849 1 0.00
850 2 0.00
851 5 0.00
852 1 0.00
853 151 0.02
854 1 0.00
859 3 0.00
861 6 0.00
862 1 0.00
863 2 0.00
864 2 0.00
865 2 0.00
866 111 0.01
867 614 0.07
868 317 0.04
869 615 0.07
870 361 0.04
871 25 0.00
872 13 0.00
873 7 0.00
874 267 0.03
875 109 0.01
876 6 0.00
877 444 0.05
878 47 0.01
879 46 0.01
880 11 0.00
881 57 0.01
882 546 0.06
883 442 0.05
884 142 0.02
885 397 0.05
886 164 0.02
887 291 0.03
888 98 0.01
889 260 0.03
890 80 0.01
891 90 0.01
892 248 0.03
893 213 0.03
894 372 0.04
895 293 0.03
896 189 0.02
897 227 0.03
898 9 0.00
899 5 0.00
900 65 0.01
901 98 0.01
902 237 0.03
903 12 0.00
904 1 0.00
905 1 0.00
906 2 0.00
909 4 0.00
911 1 0.00
913 197 0.02
914 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGGGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGTTGGTCCGAGA
TACTGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
ACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAAGGAGCGGGCG
Found at i:14790672 original size:26 final size:26
Alignment explanation
Indices: 14790635--14790687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14790625 CTGGTCAGAT
* *
14790635 CTTAGACCGGGAATGAACTCCTTATG
1 CTTAGACCGGGAATCAACTCCGTATG
*
14790661 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACCGGGAATCAACTCCGTATG
14790687 C
1 C
14790688 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATCAACTCCGTATG
Found at i:14791418 original size:25 final size:26
Alignment explanation
Indices: 14791390--14791441 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14791380 CCGGTCTGAT
14791390 CTTAG-ACGGGAATGAACTCCGTATG
1 CTTAGAACGGGAATGAACTCCGTATG
* *
14791415 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAACGGGAATGAACTCCGTATG
14791441 C
1 C
14791442 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGAACGGGAATGAACTCCGTATG
Found at i:14792322 original size:26 final size:26
Alignment explanation
Indices: 14792286--14792338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14792276 CTGGTCCGAT
*
14792286 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14792312 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14792338 C
1 C
14792339 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14792545 original size:746 final size:738
Alignment explanation
Indices: 14791573--14793057 Score: 2172
Period size: 745 Copynumber: 2.0 Consensus size: 738
14791563 CTGGTCTGAT
14791573 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACT
* * *
14791638 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTATGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCAC
14791703 ATCCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGATTGTAAATTCACACAATGGCCCCTGA
131 ATCCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGATTGTAAATTCACACAATGGCCCCTGA
* ** *
14791768 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTGTCAAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTCGCTATTTTTCACAATTGTCAAAACTTT
* * *
14791833 TTACGGTT-TGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATG
261 TTACGATTCAG-GATTTTTTAAAA-CTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATG
* *
14791897 GTCCTTGTATTTTTGTTGGCATCCATAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTT
324 ATCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTT
*
14791962 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAA
389 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAAGGCTACTGGCAGCAAACCTGTAA
*
14792027 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAGGGA-TAGGAGGCCAATA
454 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAGGGACAAGG-GGCCAATA
* * * *
14792091 TAAGGGCCAAGTACTAACACCCATCGTACATCATGTGCGCAC-TCCCCCCTCGGCCCCCCCGATC
518 TAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCACACACCCCCCCT-GGCCCCCCCGATC
* * * *
14792155 G-TCGAAACCCCAATGCCGCCAGTTAGGTTCTCCGACGATGCTCAGGCGATGGTGACCCGGCGAA
582 GCT-GAAACCCAAATGCCACCAGTCAGGTTCTCCGACGATGCTCAGGCGATGGTGACCCGACGAA
* * * ** *
14792219 GAAAAATACGTCACGAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCG
646 AAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCG
* * *
14792284 ATCTTAGACTGGGAATGAACTTCGTATG
711 ATATTAGACTAGGAATGAACTCCGTATG
* *
14792312 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGCGAGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGA----ACGGGCGGG
* *
14792377 CGGGCACTACGCCGGCCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
58 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
** * * *
14792442 TCT-GGCACAT-CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
123 T-TAGGCACATCCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGATTGTAAATTCACACAAT
* * *
14792505 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTCGCTATTTTTCACAATTTT
187 GGCCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTCGCTATTTTTCACAATTGT
** *
14792570 TGAAACTTTTTGCGATTCAGGATTTTTTAAAACTTTTCGAAAGGATTTTTGGCCCCAAACTTGGT
252 CAAAACTTTTTACGATTCAGGATTTTTTAAAACTTTTCGAAAGGATTTTTGGCCCCAAACTTGGT
* * ** *
14792635 AGACGTGATCCTTGTATTTTTGTTGGCATGCACCCAAAAATTCAGCTAAAAACTCGAAGTGTACA
317 AGACATGATCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
**
14792700 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAAAGGCTACTGGCAGCAAA
382 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAAGGCTACTGGCAGCAAA
* * *
14792765 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGACAAGGGG
447 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAGGGACAAGGGG
* *
14792830 CCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCACACACCCCCCCTGGCCCCCC
512 CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCACACACCCCCCCTGGCCCCCC
* * * * * *
14792895 CGATCGCTGGAACCCAAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGA
577 CGATCGCTGAAACCCAAATGCCACCAGTCAGGTTCTCCGACGATGCTCAGGCGATGGTGACCCGA
** * * * *
14792960 CGAAAAAAAATACGGCACCAGCACATGCCCAATTCCAGCATGTTCTGCCGTAACTCTCGGTCCGG
642 CGAAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGG
14793025 TCCGATATTAGACTAGGAATGAACTCCGTATG
707 TCCGATATTAGACTAGGAATGAACTCCGTATG
14793057 C
1 C
14793058 CTAAGTCAAC
Statistics
Matches: 663, Mismatches: 70, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
739 40 0.06
740 2 0.00
742 1 0.00
743 3 0.00
745 396 0.60
746 142 0.21
747 78 0.12
748 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (738 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCAC
ATCCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGATTGTAAATTCACACAATGGCCCCTGA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTCGCTATTTTTCACAATTGTCAAAACTTT
TTACGATTCAGGATTTTTTAAAACTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGAT
CCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAGGGACAAGGGGCCAATATAA
GGGCCAAGTACCAACACCCATCGCACATCATGTGCACACACCCCCCCTGGCCCCCCCGATCGCTG
AAACCCAAATGCCACCAGTCAGGTTCTCCGACGATGCTCAGGCGATGGTGACCCGACGAAAAAAA
ATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATATT
AGACTAGGAATGAACTCCGTATG
Found at i:14793945 original size:26 final size:26
Alignment explanation
Indices: 14793909--14793961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14793899 CTGGTCCAAT
*
14793909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
14793935 CTTAGACTGGGAGTCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
14793961 C
1 C
14793962 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:14794561 original size:893 final size:888
Alignment explanation
Indices: 14792372--14794826 Score: 3517
Period size: 878 Copynumber: 2.8 Consensus size: 888
14792362 GAGCGGACGG
* * **
14792372 GCGGGCGGGCACTACGCCGGCCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCAGTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * **
14792437 TGGGTTCTGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTTAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** *
14792502 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTCGCTATTTTTCACAAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
* * **
14792567 TTTTGAAACTTTTTGCGATTCAGGA-TTTTTTAAAACTTTTCGAAAGGATTTTTGGCCCCAAACT
196 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCG-AAGGATTTTTGGCCCCAAACT
**
14792631 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACCCAAAAATTCAGCTAAAAACTCGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
14792696 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAAAGGCTACTGGCAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* ** *
14792761 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGACAA
390 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA-TA
* *
14792826 GGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCACACACCCCCCCTGGCC
454 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGGCC
* * *
14792891 CCCCCGATCGCTGGAACCCAAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCC
519 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCC
** * ** * *
14792956 CCGACGAAAAAAAATACGGCACCAGCACATGCCCAATTCCAGCATGTTCTGCCGTAA--CTC--T
584 CCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
14793017 CGG---TC-----C---G---G---TCCG-AT-ATTAGACTAGGAATGAACTCCGTATGCCTAAG
649 CGGCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATCAACTCCGTATGCCTAAG
*
14793063 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGTCGGGGA
714 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGTCGGGGA
* * * *
14793128 TTGGTCAGGTCTCCCTTTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGTCCGGTCCGATCTT
779 TTGGTCAGGTCTCCCTCTGCGTGCTGCCGATCCTGCTACCATAACCCTCAGTCCGATCCAATCTT
14793193 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAAGA
844 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAAGA
*
14793238 GCGGGCGGGCGGACTGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGA
1 GCGGGCGGGC--A-------G---TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
14793303 TAGGGTGGTAGGTGTGTTTAAGCACATCTTCATATTACTGCATGCCAATGCCATTTTTATGGCTT
54 TAGGGTGGTAGGTGGGTTTTAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
14793368 GTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCT
119 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* * * * *
14793433 ATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTT
184 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGAAGGATTTTT
*
14793498 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAA
249 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
**
14793563 AACTCGAAGTGTACAAGATTTTGTGAGGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
314 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
14793628 GCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGATTG
379 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
14793693 ATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
444 ATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
14793758 CCCCCCCGGCCCCTCCGATTGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCTGGCGATGCTCCG
508 CCCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCG
* ** *
14793823 GCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCG
573 GCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
* *
14793888 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAGTCAAC
638 CAACCCTCGGTC-GG-CC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATCAAC
* * *
14793953 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGAT
700 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGACGGGAT
* *
14794018 GCGCAAG-CGGGGGATTGGTCAGGTCTCCCTCTGTGTGCTGCCGATCCTGCTACTATAACCCTCA
765 GCGCAAGTC-GGGGATTGGTCAGGTCTCCCTCTGCGTGCTGCCGATCCTGCTACCATAACCCTCA
* * * * *
14794082 GTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGA
829 GTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAAGA
* *
14794142 GCGGGCGGGCAGTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT-GATTCGATGGGGTGGTAT
1 GCGGGCGGGCAGTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAG
* * * * * *
14794206 ATGGGTTTTTGCACATCTTCATATTTCTACATGCCATTGCCTTTTTTATGGCTTGTCAATTCATA
65 GTGGGTTTTAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14794271 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGA
130 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
* * *
14794336 TTTTAGAAAGTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAAC
195 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTC-GAAGGATTTTTGGCCCCAAAC
* * *
14794401 TTGGTAGACGTGATCGTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
14794466 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14794531 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCATGGTTTGATGAGGGATA
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* * * *
14794596 GGGGGCCAATATAAGGGCCGAGTACCAGCACCCATTGCACATCAAGTGCGCACA--CCCCCTAGC
454 -GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGGC
* * ** *
14794659 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCAACTATGGTGC
518 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGC
*
14794724 CCCGGTGAAGAAAATTACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGG
583 CCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
14794789 TCCGGACCGAGCTTAGACTGGGAATGAACTCAGTATGC
648 T-CGG-CC-ATCTTAGACTGGGAATGAACTCCGTATGC
14794827 CTAAGCCAAC
Statistics
Matches: 1411, Mismatches: 133, Indels: 65
0.88 0.08 0.04
Matches are distributed among these distances:
866 10 0.01
868 1 0.00
877 3 0.00
878 553 0.39
879 13 0.01
880 3 0.00
882 2 0.00
883 2 0.00
888 2 0.00
891 158 0.11
892 201 0.14
893 254 0.18
894 2 0.00
895 1 0.00
896 1 0.00
899 1 0.00
902 5 0.00
903 3 0.00
904 196 0.14
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GCGGGCGGGCAGTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTTAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
TTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGAAGGATTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGGCCCC
CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCC
GGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCG
GCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATCAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGTCGGGGATT
GGTCAGGTCTCCCTCTGCGTGCTGCCGATCCTGCTACCATAACCCTCAGTCCGATCCAATCTTAG
ACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAAGA
Found at i:14795533 original size:26 final size:26
Alignment explanation
Indices: 14795497--14795549 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14795487 CCGGTTTGAT
*
14795497 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14795523 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14795549 C
1 C
14795550 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14797129 original size:26 final size:26
Alignment explanation
Indices: 14797100--14797152 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14797090 CTGGTCCGAT
*
14797100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
14797126 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
14797152 C
1 C
14797153 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:14798033 original size:26 final size:26
Alignment explanation
Indices: 14798004--14798056 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14797994 CCGGTCTAAT
*
14798004 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14798030 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14798056 C
1 C
14798057 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14798118 original size:904 final size:906
Alignment explanation
Indices: 14796377--14798263 Score: 2795
Period size: 904 Copynumber: 2.1 Consensus size: 906
14796367 ATCCAGTAAG
* * * *
14796377 ATCTTAGACTGGGAATGAACAT-CGTATGCCTAAGC-CAACTGACGAAACGAACAGCCGGGTGGG
1 ATCTTAGACTGGGAATGAAC-TCCGTATGCCTAA-CTCAACCGACGAAACGAGCAG-CAGGCGGG
* *
14796440 C-GGCGGGCACTACGTCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
63 CGGGCGGGCACTACGCCGGCCAAAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * * **
14796504 GGGTTTAGGCACATCTTCATATTTCTGCATGCCGATTCCATTTTTATGGCTTGTAAATTCATACA
128 GGGTTCAGGCACATCTTAATATTTCTACATCCCAATGACATTTTTATGGCTTGTAAATTCATACA
* *
14796569 ATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
193 ATGGCCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATT
* *
14796634 TTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAACCC
258 TTTGGAAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACC
* * * *
14796699 TCATAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
323 TCATAGACATGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
14796764 TACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
388 TACAAGATTTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
14796829 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATA
* *
14796894 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCACACACCCCCCTCAGT
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCTCAGC
* * * * *
14796959 CCCCCCGATCACAGAAACCCCAATGCCGTCGGTCAGGTTATTCGGTGATGCTCTAGCGATGGTGC
583 CCCCCCGATCACAGAAACCCCAATGCCATCGATCAGGTTATCCAGTGATGCTCCAGCGATGGTGC
* * * *
14797024 CCCAATGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGG
648 CCCAACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGG
* *
14797089 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCC
713 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCC
* ** * * *
14797154 TAAGTCAACCCATGAAACGAGCATGTGGGCGTTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCG
778 TAAGTCAACCAACAAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGAGCAGGATGCGCAAGCCG
* * * *
14797219 GGGATCGACCGGGTCCCCCTTTACGTGCTACCGATCCTGCTGCTGCAACCCTCAGTCGGGTCTT
843 GGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTGCAACCCTCAGTCCGGTCTA
*
14797283 ATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCGACAAAACGAGCAAGCAGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCGACGAAACGAGC-AGCAGGCGGGCG
* *
14797348 GGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
65 GGCGGGCACTACGCCGGCCAAAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
14797413 GTTCAGGCACATCTTAATATTTCTACGTCCCAATGACATTTTTATGGCTTGTAAATTCATACAAT
130 GTTCAGGCACATCTTAATATTTCTACATCCCAATGACATTTTTATGGCTTGTAAATTCATACAAT
* *
14797478 GGCCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTT
195 GGCCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTT
* * *
14797543 T-GAAACCTTTTGCGGTTCGGGATTTTTTTAAAATTTTTTTGGAAGGAG-TTTGGCCCCAAACTT
260 TGGAAACCTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCT
** * * *
14797606 GGTAGACATGATCCTTCTATTTTTGTTGGCATGCATAAAATAATTCAGCTAAAAACTCGTAGTGT
324 CATAGACATGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
14797671 ACAAGA-TTTTGTGACCATTCGAAAAACGTGTCCCTATTTTCAGACATTTTAATGGCTACTGGCA
389 ACAAGATTTTTGTGACCATTCGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCA
14797735 GCAAACCTGTAAAATCTCAAATGCACTTTAA-GGGGTGCGAGTTCTCGAGGTTTGATGAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATA
* *
14797799 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCTCAGC
** * * * * *
14797863 CCCCCCGATTGCCGGAACCCCAATGCCATCGATCAGGTTCTCCAGTGATGCTCCGGTGATGGTGC
583 CCCCCCGATCACAGAAACCCCAATGCCATCGATCAGGTTATCCAGTGATGCTCCAGCGATGGTGC
* * * *
14797928 CCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGG
648 CCCAACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGG
* * *
14797993 TCCGGTCTAATCTTAGACTGGGAATGACCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
713 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCC
** *
14798058 TAAGTCAACCAACAAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGAGC-GAGATGCGCAAGCC
778 TAAGTCAACCAACAAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGAGCAG-GATGCGCAAGCC
* ** * * *
14798122 GGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCTTGCTACTGTAACCCTCAGTCCGGTCTA
842 GGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTGCAACCCTCAGTCCGGTCTA
* * * *
14798187 ATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGTCAACCGACGAAACGAGC-GACCGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCGACGAAACGAGCAG-CAGGCGGGCG
14798251 GGCGGGCACTACG
65 GGCGGGCACTACG
14798264 TCGACCAGAG
Statistics
Matches: 878, Mismatches: 95, Indels: 19
0.89 0.10 0.02
Matches are distributed among these distances:
902 1 0.00
903 22 0.03
904 328 0.37
905 119 0.14
906 202 0.23
907 206 0.23
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (906 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCGACGAAACGAGCAGCAGGCGGGCGG
GCGGGCACTACGCCGGCCAAAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTCAGGCACATCTTAATATTTCTACATCCCAATGACATTTTTATGGCTTGTAAATTCATACAATG
GCCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
GGAAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTCA
TAGACATGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCTCAGCCCC
CCCGATCACAGAAACCCCAATGCCATCGATCAGGTTATCCAGTGATGCTCCAGCGATGGTGCCCC
AACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAA
GTCAACCAACAAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGAGCAGGATGCGCAAGCCGGGG
ATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTGCAACCCTCAGTCCGGTCTA
Found at i:14798312 original size:31 final size:31
Alignment explanation
Indices: 14798274--14798332 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
14798264 TCGACCAGAG
*
14798274 AGATTTTGTGACCATTTGAAAAGAGTGTACA
1 AGATTTTGTGACCATTTGAAAAAAGTGTACA
14798305 AGATTTTGTGACCATTTGAAAAAAGTGT
1 AGATTTTGTGACCATTTGAAAAAAGTGT
14798333 CCCCATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (31 bp):
AGATTTTGTGACCATTTGAAAAAAGTGTACA
Found at i:14801194 original size:26 final size:26
Alignment explanation
Indices: 14801165--14801217 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14801155 CCGATCTGAT
*
14801165 CTTAGAGTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14801191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14801217 C
1 C
14801218 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14802975 original size:26 final size:26
Alignment explanation
Indices: 14802939--14802990 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14802929 TGGCCCGATT
14802939 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14802965 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14802991 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14803417 original size:893 final size:892
Alignment explanation
Indices: 14798628--14807353 Score: 10375
Period size: 904 Copynumber: 9.8 Consensus size: 892
14798618 ATCGGTTTGA
* * * * *
14798628 TCTGATCTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACAAGCGGACGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAAGCGGGCGGGC-
*
14798693 GGTAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
65 -G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
14798758 GTTTGGGCACATCTTCATATCTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAAT
127 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
14798823 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * **
14798888 TGAAACTTTTTACGGTTCCAGATTTTTTAAAGTTTTTGCGGAAGGAGTTTTAGCCCTGAACTTGG
257 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT-CGGAAGGAGTTTTGGCCCCAAACTTGG
*
14798953 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTAC
321 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14799018 AAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
14799083 ACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAATTCTTGAGGTTTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** *
14799148 GCCAATATAAGGGCCAAGTACCAGCACCCATCTTACATCATGTGTGCACACCCCACCCCGGCCCC
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC-CCCC-GCCCC
* * * ** * *
14799213 TCCGAACG-C-AGGAACCCAAATGCCGCCATTCAGGTTCTCCGACGATGCTCCCACGATGGTGCC
577 CCCGATCGTCGA-AAACCC-AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * *
14799276 TCGGCTAAGAAAAATGCGGCACCAACACATGCCCGAACCCAGCATGTGCTGCCGCAACCCTCGGT
640 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * * * *
14799341 CAGATTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGATTAAACTCTGTATGCCT
705 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
14799406 AAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGTCGACCAGAGGAGCGGGATGCGCAAGTCGG
770 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * ** * ** *
14799471 GGATCGGTCAGGTCCCCCTCTACGTGCTGCTGATCCTGCTTTCACAACCCTCAATCCAG
835 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CGG
* *
14799530 TCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGTG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAAGCGGGC----G
* * * *
14799595 GGCGGGCACTATGCCGGCCAGAGAGACTGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGG
62 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
14799660 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
127 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
14799725 GGTCCCTTAAGCCTCCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * ** *
14799790 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAACTTTTTTAGAAGGAGTTTTGGCCCCAAACATGG
257 TGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
14799855 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAAAATCAACTAAAAACTCAAAGTTT
321 TAGACGTGATCCTTGTATTTTTGTTGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
14799920 ACAAGATTTTGTGACCACTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGC
384 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
14799985 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
449 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
14800050 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGTGCACACCCCCCGGCC
513 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC--GCACACCCCCC-GCC
** * * * * * * * *
14800115 CCCCTAATCGCCGGAACCCCATTACCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
575 CCCCCGATCGTCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* ** * * *
14800180 CCGACGAAGAAAAATGTTGCACCAACACATGCCCGAGCCCATCATGTGCTACCGCAACCCTCGGT
640 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
14800245 CCGGTCCGATCTTAGAGTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCT
705 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
14800310 AAGTCAACCCACGAAACGAGCGTGAGAGCGCTCAGCCAGCC-GATGGGTGGGATGTGAAAGCCGG
770 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * *
14800374 GGATCGGTTGGGTCCCTCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGG
835 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GG
* * * * *
14800433 TTCGGTTCGATCTTAGACTAGGAATGAACTCCATATGCCAAAGCCAACTGACGAAACGAGCGAAC
1 -TC---T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A--TAA-
* * * *
14800498 GGGAGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGT
55 --GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * ** * *
14800563 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAAGAAATTTTTATGGATCGTAAAT
118 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
14800628 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
183 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
14800693 CACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTCAACATTTTTTCGAAAGGAGTTTTGGCGC
248 CACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA-AATTTTTCGGAAGGAGTTTTGGCCC
* *
14800758 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAACAAAATCAGCTAAAAACT
312 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACT
* *
14800823 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGGCACTTTAATGGCTA
376 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
14800888 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
441 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
14800953 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCGCACACCC
506 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCACACCC
* * ** * * ** * * *
14801018 CCCGGCCCCCCCGATCGTCGGAACCCCAATATCGTCGGTTAGGTTCTCCAACAATGCTCCGGCGC
569 CCC-GCCCCCCCGATCGTCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGA
* ** * * * * * *
14801083 TGGTGCCCCGGTGAAGAAAAATGTTGCACCAACACATGCTCGAGCCCAGAATCTGCTGTCGTAAC
633 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
14801148 CCTCTGTCCGATCTGATCTTAGAGTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
698 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * *
14801213 TATGCCTAAGTCAACTCACGAAACAAGCGTGCGAGCGCTCAGCCGGCC-GATGGGTGGGATACGA
763 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * *
14801277 AAGTCGGGGATCGGTCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCGATTCG
828 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA-CC-C---TCG
*
14801342 GTTTGG
888 G-TCGG
* * * * *
14801348 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGATGAAATGAGCGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAAGCGGGCGGGCG
* * ** *
14801413 GACACTACGCCGGCCAGAGAGACGAGATGCATAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * *
14801478 AGGCATAGCTTCATATTTCTGCATGCCAATGTCATTTTTGTGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
**
14801543 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
** * * * ***
14801608 ACTTTTTGTGGTTCGGGTTTTTTTAAAATATTATCGGAAGGAGTTTTGGTGGCAAACTTGGTAGA
261 ACTTTTTACGGTTCGAGATTTTTTAAAAT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
14801673 CGTGATCCTTG-ATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14801737 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCGAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
14801802 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTAGATGAGGGATA---GG---
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
14801861 ------GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCTCGATCG
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCG
* * * * * * * *
14801920 TCGGAACCCCAATGTCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGTGAAGA
585 TCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGA
* ** * * * * * *
14801985 AAAATACGGCACCAGCACATGCCCGAGCCCAGTTTGTGTTGTCGCAACCCTCGATCTGATCTGAT
650 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
14802050 CTTGGACTGGGAATGAACTCAGTATGCTTAGACTGGGGATGAAC-CCGTATGCCTAAGTCAACCC
715 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
14802114 ACGAAACGATCGTGCGAGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGTCGAGGATCGGCCG
780 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* *
14802179 GGTCCTCCTCTGCGTGCT---G-T-C--AT-----AACCCTCGGTCTGG
845 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GG
** * * * *
14802216 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGGAACGAGCAGGCGGGTG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAA--A-TAAGC----G
* * *
14802281 GGCGGACGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAG
58 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
14802346 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
123 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
14802411 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACGA
188 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *** *
14802476 TTTTTTAAACTTTTTGTAGTTCGACA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
253 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
14802540 TTGGTAGACGTGATCTTTGTATTTTTTTTGGCATGTACAAAAAATTTCAGCTAAAAACTCGAAGT
317 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
14802605 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
382 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
14802670 GCAAACTTGTAAAATATCAAATGCTTTTTAAGGGGGGGTGAGTTCTCGAGGTTTGATGAGGGATA
447 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
14802735 GGGGACCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCC
512 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCC
* *
14802800 CCCGATCGCCGAAAACCCAATGCCGCCGGTCAGATTCTCCGGCGATGCTCCGACGATGGTGCCCC
577 CCCGATCGTCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * *
14802865 AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCT
642 GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
14802930 GGCCCGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
707 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
14802995 GTCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGGG
772 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * *
14803060 ATTGGTCGGGTCCCCCTCTGCGTGCAGCCAATCCTACTACCACAGCCCTCGGTTCGA
837 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGG-TCGG
* *
14803117 TCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAATAAGCGGGCTGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAAGCGGGCGGGCG
* * * ** ** *
14803182 GGCGCTACGCCGACCAGGGAGACGGGATGCATAAGCCGTAAATCGATAGGGGGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
14803247 AGGCACATCTTCATATTTCTACGTGCCAATACCATTTTTATGGATTGTAAATTCATAAAATGGTC
131 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
14803312 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
14803377 ACTTTTTACAGTTCGAGATTTTTTAAACTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
261 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
14803442 ATGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAGATAAAAACTCAAAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
14803507 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTA
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
14803572 TAAAATTTCAAATGCTCTTTAAGAGGGTGTGAGTTCACGAGATTTGATGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
14803637 TATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCG
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATCG
* * * ** * *
14803702 TCG-GAACCCTAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGGTGATAGTGCCCCAGCGAAG
585 TCGAAAACCC-AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAG
* * * **
14803766 AAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCTGTGACCCTCGGTCCGGTCCGA
649 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * *
14803831 TCTTGGATTGGGAATGAAGTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAC
714 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
14803896 CACGAAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGTGGGATACGCAAGCCTGGGATCGGTC
779 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * *
14803961 GGGT-CCCCTATGCGTGCTGCCGATCCTACTGCCGTAA--C-C---C--
844 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCGG
* * * *
14804001 TC--AAC--CGA--GGAAAT-AA--GCG---G-----G-----CG--G------GCGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAAGCGGGCGGGCG
* * * *
14804036 GGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATATGGTGGTAGGTGGCTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
14804101 AGGCACAGCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* **
14804166 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCAAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
** * * * * *
14804231 ACTTTTTGTGGTTTGAAATTTTTAAAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTGGA
261 ACTTTTTACGGTTCGAGATTTTT-TAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
14804296 CGTGATCCTTGCATTTTTGTTGGCATGCATAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * ** * *
14804361 TTTTGCGACCGTTTGAAAAAAGTGTCTCCATTTGGGACAATTTAGTGGCTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* **
14804426 GTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCAGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
14804491 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCGGCCCCCCCAATC
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATC
* * * *
14804556 ATCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C---G----G-CGATGGTGCCCCGACGAAG
584 GTCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAG
* * * *
14804610 AAAAATGCAGCACCAGCACACGCCCGAGTCCAGCATGTGCTG-C-C-A-CATC---CC--T-CG-
649 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* *
14804664 -----GTCT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
714 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
14804714 CACAAAATGAGCGTGCGGGCACTTAGCTGGCCAGAGGGGTC-GGATGCGCAAGTCGGGGATCGGT
779 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGGATGCGCAAGCCGGGGATCGGT
* * *
14804778 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCTTCAGTCTGG
843 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GG
* * * * * * * * *
14804829 TCCGATCTTAGACTAGTAATGAATTTCGTATACCTAAGCCAACCAATGAAATGACTGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT-A---AGCGGGC-
* * * * * *
14804894 GGCTGGCGGGCACTATGTCAGCCAGAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGATAG
61 -G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
14804959 GTGGGTTTAGGCACATCTTCATAGTTGTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATA
123 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14805024 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGA
188 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*
14805089 TTTTTGAAACTTTTTACAGTTCTG-GATTTTTTAAAATTATTTCGGAAGGAGTTTTGGCCCCAAA
253 TTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATT-TTTCGGAAGGAGTTTTGGCCCCAAA
* ** *
14805153 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAGCAATTCAGGTAAAAACTCGAAG
316 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
14805218 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCA-TTCAGGACACTTTAATGGCTACTGG
381 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-GACACTTTAATGGCTACTGG
*
14805282 CAGCAAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTGATAAGGG
445 CAGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
14805345 ATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCAGCGCACATCATGAGCCACACACCCACCC
509 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-CGCACACCC-CCC
* * *
14805410 AGCCCCCCCGGATCGTCGAAAACCAAGAAGCCGCCCGTC-GGTTCTCCGGCGCGGATGCTCCG-C
572 -GCCCCCCC-GATCGTCGAAAACCCA-ATGCCGCCGGTCAGGTTCTCC-G-GC-GATGCTCCGAC
* * * * *
14805473 GATGGTG-CCCGGTGATGAAAAATGCGCGGCACCAGCACGATGCCCAAGCCAAGCAT-TGCTGTC
631 GATGGTGCCCCGGCGAAGAAAAAT--GCGGCACCAGCAC-ATGCCCGAGCCCAGCATGTGCTGCC
* *
14805536 GCGAACCCTCGGTCAGGTCC-ATCTTTAGA-T-GGAATGAACTCCGTATACTTAGACTGGGACAT
693 GC-AACCCTCGGTCCGGTCCGATC-TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA-AT
* * ** *
14805598 GAAGCTCCGT-TGCCTAAGTCAACACATGAAACGAGAATGCGGGCGCTCAGCCGGGTCAG-GGGG
755 GAA-CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GGCCAGAGGGG
* * * * * * ** *
14805661 CGAGATGACACAAGCCGGGGATCGATC-GGTCCCCCTCTGTGTGCTACCAATCCTGCTATCGTAA
818 CGGGATG-CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
*
14805725 CCCTCAGTCTGG
882 CCCTCGGTC-GG
* * * ** * *
14805737 TCTGATGTTAGACTGTGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGGTCGGGCA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAAGCGGGCGGGC-
** * *
14805802 GGTTGGCACTACGCTAGCCAGAGAGACGGGATGCGCAAGGCATGGATCGATAGGGTGGTAGGTGG
65 -G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
14805867 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTATAAATTCGTACAAT
127 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
14805932 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
14805997 TGAAAGTTTTTGCGGTTTCGA-ATTTCTTAAAATTATTTCGGAATGAGTTATT-GCCCCAAACTT
257 TGAAACTTTTTACGG-TTCGAGATTTTTTAAAATT-TTTCGGAAGGAGTT-TTGGCCCCAAACTT
** * * * * * **
14806060 CATAGACATGATTCTTGTCTTTTTGTTGGCATACACAAAAAAATTCAGCTCAAAACTCTTAGTGT
319 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
14806125 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGTAGC
384 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14806190 AAACCTGTAAAATCTCAAATGCTTTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
449 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
14806255 GGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCATATGCGCACACCCCCCCGGCCCC
514 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GCCCC
* ** * * **
14806320 CCCGATCG-CTAAAACCTCAATGCCATCGGT-ATGGTTCTCCGGCGGTGCTCTGACGATGGCACC
577 CCCGATCGTCGAAAACC-CAATGCCGCCGGTCA-GGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * * * * *
14806383 CCGGCAAAGAAAAATGTGGCACAAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGA
640 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
14806448 CCGGTCCGATCTTAGACT--G---GAA------A----T---C--------AACTCCGTATGCCT
705 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
14806487 AGGTCAACCCACAAAACGAGCGTGCGGGCGCCCAGCCGGCAAGAGGGGCGGGATGCGCAAGCCGG
770 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
** * * *
14806552 GGATCGGTCGGGTCCCCCTCTGCAAGTTGCCAATCCTGCTGCCGCAACCCTCAGTCTGG
835 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GG
**
14806611 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAAGC--G-G-GCG
* * **
14806676 GGTGGGCACTACGCCGGCCAGAGAGACGAGATATGCAAGCCGTGGATCGATA-GGTGGTAGGTGG
62 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
14806740 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
127 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
14806805 GGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATCTTCTATATTTCACGAATTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * **
14806870 GGAAACTTTTTACGGTTC-AGGATTTTTTAAACTTTTTTTGAAGGAGTTTTGGCCCCAAACTTGG
257 TGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
14806934 TAGACGTGATGCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCAAAGCGTAC
321 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14806999 ACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
14807064 ACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCG-GGTTTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * * * *
14807128 GCCAATATGAGGGCCAAGTACCAGCACCGATCGTACATCATGTGCGAAAACCCCCAGCCCCCTCG
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCG
* * * * ** * *
14807193 ATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGGGATAGTGCCCCAGCG
581 ATCGTCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCG
* * ** *
14807258 AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTGGTCCGGTC
646 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
14807323 TGATCTTAGACTGGGAATGAACTCCGTATGC
711 CGATCTTAGACTGGGAATGAACTCCGTATGC
14807354 CTAAGCCAAC
Statistics
Matches: 6750, Mismatches: 844, Indels: 479
0.84 0.10 0.06
Matches are distributed among these distances:
818 92 0.01
819 31 0.00
820 4 0.00
822 1 0.00
823 1 0.00
825 1 0.00
826 1 0.00
828 4 0.00
830 2 0.00
832 2 0.00
834 6 0.00
835 3 0.00
837 4 0.00
840 3 0.00
841 1 0.00
844 52 0.01
845 2 0.00
849 1 0.00
850 1 0.00
852 2 0.00
854 199 0.03
855 292 0.04
856 4 0.00
860 1 0.00
862 8 0.00
864 1 0.00
865 62 0.01
866 380 0.06
867 22 0.00
868 65 0.01
869 133 0.02
870 12 0.00
871 69 0.01
872 187 0.03
873 188 0.03
874 184 0.03
875 52 0.01
876 368 0.05
877 4 0.00
878 10 0.00
879 1 0.00
880 17 0.00
881 10 0.00
882 20 0.00
883 15 0.00
884 50 0.01
885 199 0.03
886 16 0.00
887 3 0.00
888 236 0.03
889 89 0.01
890 3 0.00
891 1 0.00
892 1 0.00
893 495 0.07
894 247 0.04
896 4 0.00
897 5 0.00
898 2 0.00
899 37 0.01
900 182 0.03
901 82 0.01
902 595 0.09
903 90 0.01
904 711 0.11
905 156 0.02
906 6 0.00
907 20 0.00
908 167 0.02
909 30 0.00
910 407 0.06
911 115 0.02
912 268 0.04
913 2 0.00
914 2 0.00
915 5 0.00
916 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAAGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGT
CGAAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCGG
Found at i:14809244 original size:868 final size:871
Alignment explanation
Indices: 14807304--14810788 Score: 4203
Period size: 868 Copynumber: 4.0 Consensus size: 871
14807294 CATGTGCTAT
*
14807304 CGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
** * * *** *
14807369 AAACGAGCTAGCAGGCAGGCGGGCAGGCACTACTTAGGCCAGAGAGACGGGATACGCAAGCCGTG
66 AAACGAGCCGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
14807434 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTCATTTTTA
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
** * * * * *
14807499 TGATTTGTAAATTCATACAACGGTCCATTAATCCTTCTCATGAAGTTTCATGGCAAGATGACTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
* ** *
14807564 TTTTCTATTTTTCACAATTTTCCAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
261 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
** *
14807629 GATTTTTGG-CCCAAACTTGGTAGATTTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTC
326 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
14807693 AGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAT
391 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
14807758 TTTAATGGCTACTGGTAGCAAACCTGTAATATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
456 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* * *
14807823 AGGTTTGATGAGGGATAGGAGGCCAATATTAGAGCCAAGTACCAGCACCCATCCCACATCATGTG
521 AGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* ** * * **
14807888 CGCACTCCCCCC-CGG-CCCCCCGATCGTC-AGAACCCCAATGCTGCAGGTCAGGTTCTCCGACG
585 CGCACACCCCCCTCGGCCCCCCCGATCGTCGAGAACCCCAATGCCACCGGTCAGGTTCTCTGGTG
* ** * * * *
14807950 ATGCT--CCGGCGAAGAAAAATGTGGCCCCAGCACATGCTCGAGCCCAGCATGTGGTGCCGTAAC
650 ATGGTGCCCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAAC
* *
14808013 CCTCAGTCCTATCCGATCCTAAACTGGGAATGAACTCCGTATGCTTAGACAGAGAATGAACTA-C
715 CCTCAG-------CG---CT--ACT-GG-A-G-A-TCCGTATGCTTAGACTGGGAATGAAC-ACC
* * * * * * *
14808077 ATATGCCGAAGTCAACCCATGAAACTAGCGTGCGGTCGCTCAGCTGGCCAGAGGGGCGGGATGCG
762 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA-CCGGCCAGAGGGGCGGAATGCT
** * *
14808142 CAAGCCGGGGATCGACCGGGTCACCCTCTACGTCCCGCCGATCCTGCTGC
826 CAAGCCGGGGATCGGTCGGGTCCCCCTCTA-GT---GCCCATCCTGCTGC
* * * * * *
14808192 CGCAACCCTCAGTCTGGCCCGATCTTAGACTGGGAATGAACTCTGTTTGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * ** * *
14808257 AAACGAG-CGTACGGGCAGGCGGGCGGGCATTACGCCGTTCAGAGAGACAGGATTCGCAAGCCGT
66 AAACGAGCCG-GCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
14808321 GGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*** *
14808386 ATGGCTTGTAAATTTGCACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTC
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
14808451 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
260 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* *
14808516 GGATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATT
325 GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
14808581 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
** *
14808646 CTTTAATAACTACTGGCAGCAAACCTATAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTC
455 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
14808711 GAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
520 AAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
*
14808776 GTGCACACCCCCCTCGGCCCCCCCGATCGTCGA-AACCCCAATGCCACCGGTCAGGTTCTCTGGT
584 GCGCACACCCCCCTCGGCCCCCCCGATCGTCGAGAACCCCAATGCCACCGGTCAGGTTCTCTGGT
* * * * *
14808840 GATGGTGCACCGGTGAAGAAAATTGTGGCAACAGCACATGCTCGAGCCCAGCATGTGCTGACGCA
649 GATGGTGC-CCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCA
14808905 ACCCTC-G-G-T-CT-G-G-TCCG-AT-CTTAGACTGGGAATGAACACCGTATGCCTAAGTCAAC
713 ACCCTCAGCGCTACTGGAGATCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAAC
* * * *
14808961 CCGTGAAACGAGCGTGCGGGCGCTCAGGCGGCCAGAGGGGCGGAATGCTCAAGTCGGGCATCGGT
778 CCATGAAACGAGCGTGCGGGCGCTCA-CCGGCCAGAGGGGCGGAATGCTCAAGCCGGGGATCGGT
14809026 CGGGTCCCCCTCTATGTGCTACCAATCCTGCTGC
842 CGGGTCCCCCTCTA-GTGC--CC-ATCCTGCTGC
** *
14809060 CGCAACCCTCGGTCCAATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * **
14809125 AAACGAGCCGGCGGGCGGGTGGGCGTGCACTATGTTGGCCAGAGAGACGGGATGCGCAAGCCGTG
66 AAACGAGCCGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
**
14809190 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
14809255 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGAAGACTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
* * *
14809320 TTTTTTACTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
261 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * ** *
14809385 GAGTTTTGGCCCCAAGCTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTC
326 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
14809450 AGCCAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
391 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
14809515 TTTAATGGCTACTGGTAGCAAACTTATAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
456 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* *
14809580 GGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
521 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
** * * * * *
14809645 AACACACCCCCCACCCGGCCCCCCCGATCGTCG-GAACCCCAATGCCGCCAGTCAGGTTCTCCGA
585 CGCACA-CCCCC-CTCGGCCCCCCCGATCGTCGAGAACCCCAATGCCACCGGTCAGGTTCTCTGG
* * * * *
14809709 TGATGGTGCCTTGATGAAGAAAAATATGGCACCAGCACATGCTCGATCCTAGCATGTGTTGCCGT
648 TGATGGTGCC-CGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGC
* *
14809774 AACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
712 AA-CC-C--T-CAG--CG--C-T--ACT-GG-A-G-A-TCCGTATGCTTAGACTGGGAATGAACA
* * * *
14809839 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCAGAGGGGC-GAGAT
760 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC-ACCGGCCAGAGGGGCGGA-AT
*
14809903 GCGT-AAGCCGGGGATCGGTCGGGTCCCCCTC---TG-----CGTGCTGC
823 GC-TCAAGCCGGGGATCGGTCGGGTCCCCCTCTAGTGCCCATCCTGCTGC
* * * * * * *
14809944 CACAACCCTCGGTCTGGTCAGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAATCGACA
1 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
14810009 AAATGAGCGGGCGGGCGGGCGGGCGGGCAATACACCGGCCAGAGAGATGGGATGCGCAAGCCGTG
66 AAACGAGCCGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
14810074 GATCAATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTG--TGCACCAATGCCTTTTT
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCATTTT
* *
14810137 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACT
194 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
* * * ** **
14810202 CGTTTTTTATTTTTCACGATTTTTGAAACCTTTTACGGTTTGGGATTTTTTTTAATTTTTTCAAA
259 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
*
14810267 AGG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAA
324 AGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA
* * * * *
14810331 AATCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGCCCCCATTCCAG
387 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14810396 ACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
14810461 CTCAAGGTTTGATGAGGGTTAGGGAGCCAATATAAGGGCCAAGTACCGGTACCCATCACACATGA
517 CTCAAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
** * * *
14810526 TGTGCGCACACCCCCCTCCAACCCCTCCGATCG-CTAGAACCCCAATGTCACCGGTCAGGTTCTC
581 TGTGCGCACACCCCCCT-CGGCCCCCCCGATCGTCGAGAACCCCAATGCCACCGGTCAGGTTCT-
14810590 CAGCGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGGC-CGAGCCC
644 ---C--TG----G-TGATGGTG-CCCGATGAAGAAAAATATGGCACCAGCACAT-GCTCGAGCCC
** * *
14810654 AGCATGTGCTGCCGCAACCCT---CG--A-TCCAG-TCCG-AT-CTTAGACTGGGAATGAACTCT
697 AGCATGTGCTGCCGCAACCCTCAGCGCTACTGGAGATCCGTATGCTTAGACTGGGAATGAACACC
* * * * * * * *
14810710 GTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCGCTACACCGGCCAGAGAGACGGGATGCG
762 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT-CACCGGCCAGAGGGGCGGAATGCT
*
14810775 CAAGCCGTGGATCG
826 CAAGCCGGGGATCG
14810789 ATAGGGTGGT
Statistics
Matches: 2266, Mismatches: 260, Indels: 161
0.84 0.10 0.06
Matches are distributed among these distances:
865 2 0.00
867 2 0.00
868 639 0.28
869 97 0.04
870 108 0.05
871 6 0.00
872 1 0.00
873 1 0.00
874 2 0.00
875 2 0.00
876 2 0.00
877 1 0.00
878 3 0.00
879 1 0.00
881 1 0.00
882 2 0.00
883 3 0.00
884 387 0.17
885 187 0.08
886 2 0.00
888 299 0.13
889 239 0.11
890 4 0.00
891 45 0.02
892 3 0.00
893 2 0.00
894 61 0.03
895 60 0.03
896 102 0.05
897 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCCGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
AGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
GCACACCCCCCTCGGCCCCCCCGATCGTCGAGAACCCCAATGCCACCGGTCAGGTTCTCTGGTGA
TGGTGCCCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACC
CTCAGCGCTACTGGAGATCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCA
TGAAACGAGCGTGCGGGCGCTCACCGGCCAGAGGGGCGGAATGCTCAAGCCGGGGATCGGTCGGG
TCCCCCTCTAGTGCCCATCCTGCTGC
Found at i:14809823 original size:26 final size:26
Alignment explanation
Indices: 14809794--14809846 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14809784 CCGGTTCGAT
14809794 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14809820 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14809846 C
1 C
14809847 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14810261 original size:884 final size:880
Alignment explanation
Indices: 14808924--14810715 Score: 2347
Period size: 884 Copynumber: 2.0 Consensus size: 880
14808914 CTGGTCCGAT
* * * *
14808924 CTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCGTGAAACGAGCGTGCGGGCGCTCAGG
1 CTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* *
14808989 CGGCCAGAGGGGCGGAATGC-TCAAGTCGGGCATCGGTCGGGTCCCCCTCTATGTGCTACCAATC
65 CGGCCAGAGGGGCGG-ATGCGT-AAGCCGGGGATCGGTCGGGTCCCCCTC---GTG----C---C
* ** *
14809053 CTGCTGCCGCAACCCTCGGTCCAATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
118 GTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * **
14809118 ACCGACGAAACGAGCCGGCGGGCGGGTGGGCGTGCACTATGTTGGCCAGAGAGACGGGATGCGCA
183 ACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
**
14809183 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
248 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CAGCCAATGCC
*
14809248 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGA
312 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14809313 AGACTCGTTTTTTACTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
377 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* **
14809378 TCGGAAGGAGTTTTGGCCCCAAGCTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
442 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14809443 AACATTCAGCCAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTT
507 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
14809508 CAAACACTTTAATGGCTACTGGTAGCAAACTTATAAAATCTTAAATGCTCTTTAAGGGGGTGTGA
572 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14809573 GTTCTCAGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
637 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* *
14809638 TCATGTGAACACACCCCCCACCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCA-GTCAGGT
702 TCATGTG-GCACACCCCCC-CCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCAGGTCAGGT
* * *
14809702 TCTCCGATGATGGTGCCTTGATGAAGAAAAATATGGCACCAGCACATGCTCGATCCTAGCATGTG
765 TCTCCGATGATGGTGCC-CGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTG
* * *
14809767 TTGCCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
829 CTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
14809820 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* *
14809885 CGACCAGAGGGGCGAGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTC-TG-CGTGCTGCCACA
65 CGGCCAGAGGGGCG-GATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCGTGCCGTGCTGCCGCA
* * * * * * *
14809948 ACCCTCGGTCTGGTCAGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAATCGACAAAAT
129 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * *
14810013 GAGCGGGCGGGCGGGCGGGCGGGCAATACACCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATC
194 GAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
14810078 AATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCA-CCAATGCCTTTTTTATGG
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC--TGCAGCCAATGCCATTTTTATGG
* *
14810142 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTT
322 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
* * * ** ** *
14810207 TTTATTTTTCACGATTTTTGAAACCTTTTACGGTTTGGGATTTTTTTTAATTTTTTCAAAAGGTG
387 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
14810272 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAAAATCAG
452 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAG
* * * *
14810337 GTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGCCCCCATTCCAGACACTT
516 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
14810402 TAATGGCTAGTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
581 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* * * * *
14810467 GTTTGATGAGGGTTAGGGAGCCAATATAAGGGCCAAGTACCGGTACCCATCACACATGATGTGCG
646 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG-G
* ** * *
14810532 CACACCCCCCTCCAACCCCTCCGATCG-CTAGAACCCCAATGTCACCGGTCAGGTTCTCCAGCGA
710 CACACCCCCCCCCGGCCCCCCCGATCGTC-AGAACCCCAATG---CC-GCCAGG---T-CAG-G-
*
14810596 TGCTCCGATGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGGC-CGAGCCCAGCATG
764 TTCTCCGATGATGGTG-CCCGATGAAGAAAAATATGGCACCAGCACAT-GCTCGAGCCCAGCATG
* *
14810660 TGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATG
827 TGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATG
14810715 C
1 C
14810716 CTAAGCCAAC
Statistics
Matches: 785, Mismatches: 91, Indels: 41
0.86 0.10 0.04
Matches are distributed among these distances:
883 1 0.00
884 366 0.47
885 193 0.25
886 2 0.00
887 2 0.00
888 3 0.00
889 1 0.00
892 3 0.00
893 3 0.00
894 1 0.00
895 105 0.13
896 103 0.13
897 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (880 bp):
CTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
GGCCAGAGGGGCGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCGTGCCGTGCTGCCGCAAC
CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
GCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGGCACACC
CCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCAGGTCAGGTTCTCCGATGATGGTGC
CCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CCGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14812295 original size:26 final size:26
Alignment explanation
Indices: 14812266--14812318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14812256 CCGATCCAAT
*
14812266 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14812292 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14812318 C
1 C
14812319 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14813186 original size:26 final size:26
Alignment explanation
Indices: 14813157--14813209 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14813147 GTGGTCCGAT
14813157 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14813183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14813209 C
1 C
14813210 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14813617 original size:883 final size:884
Alignment explanation
Indices: 14810660--14814988 Score: 5168
Period size: 883 Copynumber: 4.9 Consensus size: 884
14810650 GCCCAGCATG
* *
14810660 TGCTGCCGCAACCC-TCGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTTCGATTCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14810724 ACCGATGAAATGAGCGGGCG-G-GCGC--TACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
65 ACCGATGAAACGAGCGGGCGAGCGGGCAGTACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGG
* *
14810785 ATCGATAGGGTGGTTGGTGGGTTTAGGCTCATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
14810850 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
14810915 TTTTTATTTTTCATGATTTTTGAAA-TGTTTTACGGTTTGGGATTTTTTTAAAGTTTTTCGGAAG
260 TTTCTATTTTTCATGATTTTTGAAACT-TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAG
* * * *
14810979 CAGTTTTGGCCCCAAAGTTGGTAGACATGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
14811044 AGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
389 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
14811109 TTTATTAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGAGTGTGAGTTCTCA
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* * * *
14811174 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAACACCCATCACACATCATCTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
14811239 CGCACA-CCCCCCGGTGCCCCCGATCATCGGAACCCTATTGCCGCCCGTCAGGTTCTCCGACGAT
584 CGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * * *
14811303 GCTCTGACGATTGTGCCCCGACGAAGAAAAAT-CGCCACCAGCACATGCCTGAGCCCAGCATGTG
648 G--C-G-CGA-TGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** *
14811367 CTGCCACAACC----CT-CGGTC-----C-GG--T---CT--G-AT-CTTAGACTGGGAATGAAC
708 CTGCCGTAACCTGTGCTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
14811412 TCTGTATGCCTAAGTCAACCCACGAAATGAGAGTGCGGGTGCTCAGCCTGCCAGAA-GGGCGGAA
773 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCA-AAGGGGCGGGA
* * * * * *
14811476 TGCCCAAGCCGAGGATCGACCGAGTCCCTCTCTGCATGCTGCCGATCT
837 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** *
14811524 TGCTGCCACAA-CTTTCGATTCGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTTCGATTC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
14811588 ACTAATGAAACAAACGGGTTGGCGGGCAGGCGGGCAGTACA--GGCCAGAGAGACGGGATGCGCA
65 ACCGATGAAAC-GA-GCG--GGC--G-A-GCGGGCAGTACACCGGCCAGAGAGACAGGATGCGCA
* * * *
14811651 AGCCGTGGATCGATAGGGTGGT-GAGTGGGTTTAGGCGCATCTACATATTTCTGTGTGACAATGC
122 AGCCGTGGATCGATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
14811715 CA-CTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
186 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * **
14811779 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTT-AAATTTT
251 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
* * * * *
14811843 TTCGGAAGGGGTTTTGGCCCCTAACTTGCTAAACGTGATCCTTGTACTTTTGTTGGCATGCACAA
316 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * ** * *
14811908 AAACATTCAGCTAAAACCTTGAAGTGTACAAGATTTTGTGACCATTTTGAAAAAATTATCCCCAT
381 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCAT
*
14811973 TTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCT-TTGTAAGGGGGTG
445 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTG
** * * * *
14812037 TGAGTTCTTGAGGTTTAATGAGCGATAGGTGGCCAATATAAGGGACAAGTACCAGCACCCATCGC
509 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
14812102 ACATCATGTGCGCACACCACCCCCGGCCGCCCTGATCATCGGAACCCTAATGCTGCCGATCAGGT
574 ACATCATGTGCGCACACC-CCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *** * *
14812167 TCTCCGACTATGCACCG--GTGAAGGTGAGTGAAGAAAAAAGCGGCACCAGCACATGCCCGAGCC
637 TCTCCGACGATGC-GCGATGTG-CCCTG-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
14812230 CAGCATGTGCTGTCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
699 CAGCATGTGCTGCCGTAA-CCT--GT--GCTCCGATCTTAGACT-GGAATGAACTCCGTATGCTT
* * * * *
14812295 AGACTAGGAATTAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGG
758 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * * ** * * **
14812360 CCAGAGGGACGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCATTTGCGTGCTGTAGATCC
823 CCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14812422 TGCTGTCACAACCC-TC-AGTCTGATCCGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCC
1 TGCTGCCGCAACCCTTCGA-T-TCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * * *
14812485 AACCGACAAAACGAGTGGGCGGGTGGGAGGCGGGCAATACATCGGCCAGAGAGATAGGATGCGCA
64 AACCGATGAAACGA----GC-GG-GCGA-GCGGGCAGTACACCGGCCAGAGAGACAGGATGCGCA
* * * * *
14812550 AGCCGTGAATCGATAAGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCC
122 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
14812615 ATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
187 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14812680 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTT-CTGGTTTGGGATTTTTTAAAATTTT
252 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GGTTTGGGATTTTTTAAAA-TTT
*
14812744 TTTC-GAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
315 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
14812808 AAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
380 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
14812873 TACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
445 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
14812938 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCA
510 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
14813003 CATCATGTGCGCACACCCCCCCGACCCACCCGATCGTCGGAACCCCAATACCGTCGGTCAGG-T-
575 CATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
14813066 T-C-AC-A-G-GCGATGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCTCC-AGCCCAGC
639 TCCGACGATGCGCGATGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGC-CCGAGCCCAGC
* *
14813125 ATGTGCTGCCGCAATCCTTGGTGTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
703 ATGTGCTGCCGTAA-CC----TGTGCTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGAC
14813190 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAA
762 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAA
* * * * * **
14813255 AGGGGCGGGAT-CGTAAGTCGGGGATCAACCGGGACCCCCTCTACGTGCTGTTGATCC
827 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
14813312 TGCTGCCGCAACCCTTGGTTTCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTCGATTCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14813377 CCGATGAAACGAGCGGGCGAGCGGGCATTACGCCGGTCAGAGAGATAGGATGCGCAAGCCGTGGA
66 CCGATGAAACGAGCGGGCGAGCGGGCAGTACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
* * * *
14813442 TCGATAAGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGTGTGCCAATGGCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* *
14813507 GCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
14813572 TTCTAATTTTCATGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGA
261 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
*
14813637 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
326 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
14813702 CTAAAAACCCAAAGTGTACAAGATTTTATGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTT
391 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
14813766 TAATTGCTACTGGTAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAG
456 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* * * *
14813831 GTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCACACATCATGTGTG
521 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
14813896 --CACCCCCCCGGCCCCCCGATCGTAGGAACCCCAATGCCGCCCGTCAGGTTCTCCGTCGATGCT
586 CACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG--
* *
14813959 CCGACGATGGTGCCCTGACGAAGAAAAA-GCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTG
649 -CG-CGAT-GTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
14814023 CCGTAACC----CT-CGGTC-----C----A-G---TCC-AAT-CTTAGACTGAGAATGAACTTC
711 CCGTAACCTGTGCTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
14814068 GTATGCCTAAGTCAACCCATGAAATGAGCGCGCGGGCGCTCAACCGGCCAGAGGGCCGGGATGCG
776 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCG
* * *
14814133 CAAACTGGGGATCGACCGGGTCCCCCTCTGCGTGTTGCCGATCC
841 CAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14814177 TGCTGCCGCAACTCTT-GATTCGGTCTGATCTTAGAATGGTAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTTCGATTC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * *
14814241 ACTGACGAAACGAGTGGGCGAGCGGGCAGGCAGTACGTCGGCCTGAGATACA-GATGCGCAAGCC
65 ACCGATGAAACGAGCGGGCGAGC--G--GGCAGTACACCGGCCAGAGAGACAGGATGCGCAAGCC
* *
14814305 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
126 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * *
14814370 TTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAGGTTTCAT-GCAAGATGAC
191 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
14814434 TCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGGCTTTTTTAAAATTTTTTCGA
256 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGG
* * * * *
14814499 AAGGGGTTTTGGCCCCGAACTTGGTAGACATGATTCTTGTATTTTT-TATGGTATGCACAAAAAA
321 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAA
* *
14814563 ATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTG-CCCCATTTCAG
385 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14814627 ACACTTTAAGGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTT
450 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14814692 CTCAAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
515 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * **
14814757 TGTGCGCACA-CCCCCCGGCCCCCCGATCGCCAGAACACCATTGACGCCGGTCAGGTTCTCCGGT
580 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * *
14814821 GATGCTCCAGCGATGGTGCCTTGGCGAAGAAAAATACGGCACCAGCAGATGCCCGAGCCCAGCAT
645 GATG---C-GCGAT-GTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * * *
14814886 GTGCTACTGTAACCCTCGATTCGGTCTGATCTTAGAATAGGAATGAACTCTGTAAGCTTAGACT-
705 GTGCTGCCGTAA-CCT-G--T-GCTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTG
* *
14814950 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
764 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
14814989 ACGGACGGGC
Statistics
Matches: 2978, Mismatches: 357, Indels: 230
0.84 0.10 0.06
Matches are distributed among these distances:
863 1 0.00
864 141 0.05
865 112 0.04
866 6 0.00
867 299 0.10
868 207 0.07
869 62 0.02
870 5 0.00
871 9 0.00
872 141 0.05
873 261 0.09
874 88 0.03
875 50 0.02
876 4 0.00
878 1 0.00
879 33 0.01
880 18 0.01
881 3 0.00
882 157 0.05
883 311 0.10
884 5 0.00
885 3 0.00
886 2 0.00
887 1 0.00
889 8 0.00
890 142 0.05
891 178 0.06
892 3 0.00
893 8 0.00
894 37 0.01
895 11 0.00
896 2 0.00
897 19 0.01
898 162 0.05
899 114 0.04
900 266 0.09
901 101 0.03
902 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
TGCTGCCGCAACCCTTCGATTCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGCGGGCGAGCGGGCAGTACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCG
CGATGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTA
ACCTGTGCTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGC
CGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:14815690 original size:26 final size:26
Alignment explanation
Indices: 14815661--14815713 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14815651 CCGGTCCAAT
14815661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14815687 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14815713 C
1 C
14815714 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14816612 original size:26 final size:26
Alignment explanation
Indices: 14816561--14816613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14816551 CTGGTCCGAT
* *
14816561 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14816587 CTTAGACTCGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14816613 C
1 C
14816614 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14816755 original size:900 final size:897
Alignment explanation
Indices: 14814942--14820093 Score: 6387
Period size: 901 Copynumber: 5.8 Consensus size: 897
14814932 ACTCTGTAAG
14814942 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGACGGGCAGG-AGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A--G-CGGGC-GGCA-G
* *
14815005 GCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGG
60 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
14815070 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
125 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
14815135 AATGGTCCCTTAAACCTTCACGTGAAGTTTAATGGCAAGACGACACGTTTTCTATTTTTCACGAT
190 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-
* * * *
14815200 TTTTGAAACTTTTTA-GAGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCGCAAAC
254 TTTTCAAAATTTTTACG-GTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
14815264 TTGGTAAATGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAACAATTCAGCTAAAAACTCGAAG
318 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAG
*
14815328 TGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
382 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14815393 AGCAAACCTGTAAAATCTTAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
447 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
14815458 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCACTCGCC
512 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCT-GCC
** * * **
14815522 CCCCCGATCACCGGAACGCCAATGCCGCCCGTCAGGTTCTTCGTGATGCTCCAACGATGGTGCCC
576 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGTGATGCT-C-TGGATGGTGCCC
* * * ** *
14815587 CGACGAAGAAAAATGTGACACCAGCAGATGCCCGAGCCCAGCATGCGCTGTTGCAAGCCTCGGTC
639 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
14815652 CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCCGTATGCCTA
704 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
14815717 AGTCAATCCACGAAATGAGCGTG-CGAGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
769 AGTCAACCCACGAAACGAGCGTGCCG-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGG
* * *
14815781 GGATCGATCGGGTCCCCCTCTGCGTGCTAT-CGATCCTGCTACCGT-AACCCTCAATCTGGTCTG
833 GGATCGATCGGGTCCCCCTCTGCATGCT-TCCGATCCTACTGCC-TCAACCCTCAATCTGGTCTG
14815844 AT
896 AT
* * *
14815846 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGACAGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CAGGCGGG
** * ** * *
14815911 CGGGCACTACGCCAACCAGAGAGACGCGATTTGCATGCCATGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *** * ** *
14815976 TTAGGCACAT-TTCATATTTTTTTGTGCCAATGCCTTTTTTATCACATGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14816040 TCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCATGATTTTTA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* *
14816105 AAAGTTTTTACGGTTCGGGATTTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
260 AAA-TTTTTACGGTTCAGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
14816170 AGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14816235 AGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGATACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
14816300 CCTGTAAAATCTCAAATGCACTTTAA-GGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGGGGA
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
14816364 CCAATATAAGGGCCAAATAGCAGCACCCAACGCACATCATGTGCACACACCCCCTGACCCCCCGA
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGCCCCCCCGA
*
14816429 TCGTCGGAACCCCAATACCGCCGGTCAGGTTCTTCGATGATGCTCTGTGATGGTGCCCCGACGAA
583 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG-TGATGCTCTG-GATGGTGCCCCGACGAA
* * * * * *
14816494 GAAAAATGTGGCACCAACAAATGCCTGAGCCTAGCATGTGCTGCCACAACCCTTGGTCTGGTCCG
646 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
* * * * *
14816559 ATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTCGGAATGAACTCCATATGCCTCAGTCAAC
711 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
14816624 CCACGAAACGAGCAAT-CCGGCGCTCAGTCGGCTAGAGGGGCGGGATGCACAAGTCGGGGATCGA
776 CCACGAAACGAGC-GTGCCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGA
* * * * * *
14816688 TCGGGTCCCCCTCTGCATGCTTCCAATTCTACTGCCTCAACCTTCAATTTGATCTAAT
840 TCGGGTCCCCCTCTGCATGCTTCCGATCCTACTGCCTCAACCCTCAATCTGGTCTGAT
* * * *
14816746 CTCAGACTGGGAATGAACTCCGAATGACTAAGCCAACCGACGAAACAAGCGGGC-G--GGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGC
* * * * *
14816808 AGGCGCTACGCCGACCAGAGAGACAGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
14816873 TAGGCACATCGTCATATTTCTACATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
14816938 CCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTATTT-ATGA-TTTCA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT-TTTCATGATTTTC-
* * *
14817001 AAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTA
259 AAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
14817066 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCCAAAAACTCGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14817131 GACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14817196 CTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
14817261 CAATATAATGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCCGGGCCCCC
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGCC---CCCCC
* * * * * *
14817325 GATCGTCGGAACCTCAATGCCACCAGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTACCCCGAC
581 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC-GTGATGCTCT-G-GATGGTGCCCCGAC
** * * * *
14817390 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCGGCTGCAACCATCGATCTGGT
643 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* *
14817455 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCGAAGTC
708 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
14817520 AACCCACGAAACGAGCGTGCAGGCGTTCAGCCGACTAGAGGGGCGGGATGTGCAAGTCAGGGATC
773 AACCCACGAAACGAGCGTGCCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
* * * ** * * * ****
14817585 GGTCAGGTCCCTCTCTGTGTGCTGT-CGATCCTGCTGCCGCAACCCTCAGTCCAAACTGAT
838 GATCGGGTCCCCCTCTGCATGCT-TCCGATCCTACTGCCTCAACCCTCAATCTGGTCTGAT
* ** * * *
14817645 CTTAGACTAGGAATGAACTCCGTATAACTAAGCCAACCGACAAAACAAGCGGGCGGCCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAG-GCGGG
*
14817710 -GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
***
14817774 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14817839 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTC
* * * *
14817904 AAAATTTTTGCGGTTCGGGATTTTTTTAATATTTTTTCGGAA-AATGTTTTGGCCCCAAACTTGG
259 AAAATTTTTACGGTTCAGGA-TTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGG
* * * * *
14817968 TAGACGTGATCCTTGAATTTTTGTTGGCGTGCCCAAAAAATTTCAGCTAAAAACTCGAGGTGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14818033 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
** *
14818098 ACCTACAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14818163 GGCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCC--CCGCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGCC-CCCCC
* * * * * *
14818226 GATTGCCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTACCCCGAC
581 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG-TGATGCTCT-G-GATGGTGCCCCGAC
* * * *
14818291 AAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
643 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* *
14818356 CCGATCTTAGACTGGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTT
708 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** * * *
14818421 AACCCACGAAACAAACGTGCGGGCGCTCAGCCATCCAGAGGGGCGGGATGTGTAA-ACTGGGGAT
773 AACCCACGAAACGAGCGTGCCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGAT
* * * *
14818485 CAATCGGGTCCCCCTCTGCATGCTACCGATCCTACTG-CTGCAACCCTCACT-TCGGTCCGAT
837 CGATCGGGTCCCCCTCTGCATGCTTCCGATCCTACTGCCT-CAACCCTCAATCT-GGTCTGAT
*
14818546 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-ATGCGGAC-G--GGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GCGGGCGGCAGGCGGG
* ** * *
14818607 CGGGCGCTACGCTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTTGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
14818672 TTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
14818737 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCATGACGACTCATTTTCTATTTTTCATGATTTTCG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* ** *
14818802 AAACTTTTAGCGGTTTGGGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTA
260 AAATTTTTA-CGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
14818867 GACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * * *
14818932 GATTTTTTGACCATTTAAAAAAAGTGTCCGCATTTCACACACTTTAATGGCTATTTGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
14818997 CTGTAAAATCTAAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
14819062 CAATATAAGGGCCAAGTAGCAGTACCCA-CGCACATCATGTGCGCACACCCCCCGCCCCCCCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTG-CCCCCCCGA
** * * * *
14819126 TCGTCAAAACCCCAATGTCGTCGGTCAGGTTC-TC-CG--G--C--GATGGTGACCCGACGAAGA
583 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGTGATGCTCTGGATGGTGCCCCGACGAAGA
* * * *
14819183 AAAATGCGGCAGCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAA-CC-C--TC--G---G-T
648 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
14819238 C-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
713 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
14819287 ACGAAACGAACGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGGATACGCAAGCCGAGGATCGATCG
778 ACGAAACGAGCGTGCCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCG
* * * * * *
14819352 GGTCCCCCTCTACATGCTACCGATCCTATTGCCGCAACCCACAGTCTGGTCTGAT
843 GGTCCCCCTCTGCATGCTTCCGATCCTACTGCCTCAACCCTCAATCTGGTCTGAT
* *
14819407 CTTAGACTAGGAATGAACTCGGTATGCCTAAGCCAA-C--CG--ACGA---------A-------
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGC
* *
14819451 ----A-T------------GAG-C-GG--GCGCAAGCCGTGGATCAATAGGGTTGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* ** *
14819495 TAGGCACATCTTCATCTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
14819560 CCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
* * * *
14819625 AACTTTTTGCAGTTCAGGATTTTTTTTAAATTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGTA
261 AA-TTTTTACGGTTCAGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
14819690 GACGTTATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
14819755 GATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATAGCTACTGGCTGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
14819820 CTATAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGACGAGCGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
14819885 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCTGGCTCACCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCT-GCCCCCCCGA
* * * *
14819949 TCATCGGAACCCCAATGGCACCGGTCAGGTTCTTC--GA----C--AATGGTGCCCCGACGAAGA
583 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGTGATGCTCTGGATGGTGCCCCGACGAAGA
* * * * *
14820006 AAAATGTGGCACCAGCACATGCTCGAGCCCAGCTTGTGCTG-CGCAACCCTCGGTTTGATTCGAT
648 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
14820070 CTTAGACTGGGAATGAACTCCGTA
713 CTTAGACTGGGAATGAACTCCGTA
14820094 CGCCTAAGCC
Statistics
Matches: 3727, Mismatches: 439, Indels: 221
0.85 0.10 0.05
Matches are distributed among these distances:
822 166 0.04
823 342 0.09
824 24 0.01
825 1 0.00
826 4 0.00
831 1 0.00
832 2 0.00
837 1 0.00
838 1 0.00
839 2 0.00
841 1 0.00
844 2 0.00
846 1 0.00
847 1 0.00
856 2 0.00
857 1 0.00
858 2 0.00
860 1 0.00
861 169 0.05
862 5 0.00
863 1 0.00
865 1 0.00
868 1 0.00
870 2 0.00
872 1 0.00
877 2 0.00
878 1 0.00
881 1 0.00
883 2 0.00
885 1 0.00
886 2 0.00
887 57 0.02
891 1 0.00
893 1 0.00
895 191 0.05
896 195 0.05
897 355 0.10
898 268 0.07
899 285 0.08
900 514 0.14
901 594 0.16
902 178 0.05
903 26 0.01
904 282 0.08
905 36 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
AATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGCCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGTGATGCTCTGGATGGTGCCCCGACGAAGAAAA
ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGT
CCCCCTCTGCATGCTTCCGATCCTACTGCCTCAACCCTCAATCTGGTCTGAT
Found at i:14817496 original size:26 final size:26
Alignment explanation
Indices: 14817460--14817512 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14817450 CTGGTCTGAT
14817460 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14817486 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14817512 C
1 C
14817513 CGAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14818390 original size:26 final size:26
Alignment explanation
Indices: 14818361--14818413 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14818351 CCGGTCCGAT
*
14818361 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14818387 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14818413 C
1 C
14818414 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14820338 original size:26 final size:26
Alignment explanation
Indices: 14820309--14820365 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
14820299 ACGACTTTTT
* *
14820309 TTTTTATTTTTC-ACGATTTTTGAAAC
1 TTTTTATGTTTCGA-GATTTTTGAAAA
* *
14820335 TTTTTGTGTTTCGAGATTTTTTAAAA
1 TTTTTATGTTTCGAGATTTTTGAAAA
14820361 TTTTT
1 TTTTT
14820366 TCAGAAGGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.21, C:0.07, G:0.11, T:0.61
Consensus pattern (26 bp):
TTTTTATGTTTCGAGATTTTTGAAAA
Found at i:14820813 original size:26 final size:26
Alignment explanation
Indices: 14820777--14820829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14820767 GCGGTCTGAT
*
14820777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14820803 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14820829 C
1 C
14820830 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14824834 original size:26 final size:26
Alignment explanation
Indices: 14824805--14824857 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14824795 CTGGTCCGAT
14824805 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14824831 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14824857 C
1 C
14824858 CTAGGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.