Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 81 of 131
Found at i:14825745 original size:26 final size:26
Alignment explanation
Indices: 14825709--14825761 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14825699 CTGGTCCGAT
* *
14825709 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14825735 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14825761 C
1 C
14825762 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14825963 original size:900 final size:900
Alignment explanation
Indices: 14824092--14826635 Score: 3635
Period size: 900 Copynumber: 2.8 Consensus size: 900
14824082 TGCTTCATAT
* * * *
14824092 GACT-GGAATGAACTTC-TATGCCCAAGCCAACCAACAAAACGAGCGA-GGGTGGCGG-CTGGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGC-ACGCG-GGCGGAC-GGGC
* *
14824153 AGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGT
62 A---GGCACTACGCCGGCCAGAGAGAC-GGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
14824218 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAAT
123 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
14824283 GGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
188 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
14824348 TGAAACTCTTTGTGGTTCGGGATTTTTGAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGG
253 TGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGG
* * * * *
14824413 TAGACGTGATCCTTGCATTTTTTTTGGCATGGACAAAAAGATTCAACCAAAAACTCGAAGTGTAC
318 -AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTAC
* *
14824478 AAGAGTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCGGACACTTTAATGGCTACTGGCAGCAA
382 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
14824542 A-C-GTAAAATCTCAAATGCTCTTTAAAGGGGT-TGAGTTCTCAAGGTTTGATGAGGGATAGAGG
447 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14824604 GCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCC
512 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTC
* * *
14824669 CGATCGTCGGAACCCCAATGCCGTCGTTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGA
577 CGATCGTCGGAACCCAAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* * * *
14824734 CGGAGAAAAATGCGGCACCAGCACATGTCTGAGCCCAGTATGTGCTGCGGTAACCTTCGGTCTGG
642 CGAAGAAAAATGCGGCACCAGCACATGTCCGAGCCCAGTATGTGCTGC-GTAACATTCGATCTGG
*
14824799 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGT
706 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * *
14824864 CAACCCATGAAATGAACGTGCGGGCACTCAGCTGGCCAGAGGGGCAGGATGCACAAGCCGAGGAT
771 CAACCCACGAAACGAACGTGCGGGCACTCAGCCAGCCAAAGCGGCAGGATGCACAAGCCGAGGAT
** * * * * *
14824929 CGGTTGGGTTCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGATTCGATCCGATCTTA
836 CGACTGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGATCCGATCCAATCTTA
* * *
14824994 GACTGGGAATGAACTCTGTATGCTTAAGCCAACCGACAAAACGAGCACGCGGGCGGACGGGCGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGCACGCGGGCGGACGGGCAGG
* *
14825059 CACTACGCCGACCAGAGAGACAGGATGCGCT-AGCCGTGGATCGATAGGTTGGTAGGTGGGTTTA
65 CACTACGCCGGCCAGAGAGAC-GGATGCG-TAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
14825123 GGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCC
128 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
14825188 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTGAAGATTTTTGAAA
193 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * * *
14825253 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGAAAAGATTTTTGGCCCCAAACCTGGAGGAC
258 CTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGA-GAC
* *
14825318 GTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGAT
322 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGAT
* *
14825383 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTA
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
14825448 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATGTTGGATGAGGGATAGGGGGCCAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
14825513 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATC
517 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATC
* * *
14825578 CTCGAAACCCTAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
582 GTCGGAACCCAAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * *
14825643 AAAAATACGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGTCGTATCATTCGATCTGGTCCGA
647 AAAAATGCGGCACCAGCACATGTCCGAGCCCAGTATGTGCTG-CGTAACATTCGATCTGGTCCGA
* * *
14825708 TCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACC
711 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* ** * * * *
14825773 CACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAAAGCGGCGGGATGCGCAAGCTGGGGATCGACT
776 CACGAAACGAACGTGCGGGCACTCAGCCAGCCAAAGCGGCAGGATGCACAAGCCGAGGATCGACT
* * * *
14825838 GGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCATAACCCTCGATCCGGTCCAATCTTA
841 GGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGATCCGATCCAATCTTA
* * * **
14825898 GACTGGGAATGATA-TCCGTATGCCTAAGCCAACTGACGAAA-TG-A-GCGGGCGGGTGGGCAGG
1 GACTGGGAATGA-ACTCCGTATGCCTAAGCCAACCGACAAAACAGCACGCGGGCGGACGGGCAGG
* *
14825959 CACTACGCCGGCCAGAGAGACGAGATGCATAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTACGCCGGCCAGAGAGACG-GATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
14826024 GCACATCTTCATATTTCTACGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
129 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
14826089 TTAAGCTTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTCTGAAAT
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
** * * *
14826154 TTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGTCTCCAAACTTGGAAGACA
259 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGG-AGACG
* ** *
14826219 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGTTAAAAACTTGAAGTGTACAAGATT
323 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATT
* *
14826284 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGGCAACAAACCTGT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
14826349 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
14826414 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCT-CGATC
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCTCCGATC
* * *
14826478 GTCGGAACCCAAATGCCG-CCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAA
582 GTCGGAACCCAAATGCCGTCGA-TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* * * * * * **
14826542 GAAAAATGTGGCACCGGCACATGTACGCGCCCAGTATGTGCTGCCGTAAGC-CTCGGTCCAGTCC
646 GAAAAATGCGGCACCAGCACATGTCCGAGCCCAGTATGTGCTG-CGTAA-CATTCGATCTGGTCC
* *
14826606 AATCTTAGACTCGGAATGAACTCCGTATGC
709 GATCTTAGACTGGGAATGAACTCCGTATGC
14826636 CTAAGCCAAC
Statistics
Matches: 1465, Mismatches: 159, Indels: 38
0.88 0.10 0.02
Matches are distributed among these distances:
899 5 0.00
900 918 0.63
901 52 0.04
902 6 0.00
903 47 0.03
904 435 0.30
905 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAGCACGCGGGCGGACGGGCAGGC
ACTACGCCGGCCAGAGAGACGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGAGACGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGTCG
GAACCCAAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGTCCGAGCCCAGTATGTGCTGCGTAACATTCGATCTGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAACGTGCGGGCACTCAGCCAGCCAAAGCGGCAGGATGCACAAGCCGAGGATCGACTGGGTC
CCCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGATCCGATCCAATCTTA
Found at i:14827350 original size:26 final size:26
Alignment explanation
Indices: 14827321--14827373 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14827311 CCGGTCCGAT
*
14827321 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14827347 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14827373 C
1 C
14827374 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14828258 original size:26 final size:26
Alignment explanation
Indices: 14828222--14828274 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14828212 TCGGTCCAAT
14828222 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14828248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14828274 C
1 C
14828275 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14829142 original size:26 final size:26
Alignment explanation
Indices: 14829113--14829165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14829103 CTAATCTGAT
* *
14829113 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14829139 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14829165 C
1 C
14829166 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14829146 original size:891 final size:886
Alignment explanation
Indices: 14826580--14832603 Score: 6593
Period size: 893 Copynumber: 6.9 Consensus size: 886
14826570 GCCCAGTATG
* ** *
14826580 TGCTGCCGTAAGCCTCGGTCCAGTCCAATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCAGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14826645 CCAACGAAACGAGC-GG-GAG-GGC-AGGCGGGCACTACG-TCGGCCTGAGAGACAGGATGCGTA
65 CCGACGAAACGAGCGGGCGAGCGGCGA-GCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCA
* * **
14826705 AGTCATGGATCGA-ACGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
128 AGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * * *
14826769 CTTTTTTATGGCTTGTAAATTCAAACAAAGGGCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAG
192 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * *
14826834 AC-ACTCGTTTTCTATTTTTCACGATTTTTGAAACTCTTTGTGGTTCAGGATTTTTGAAAATTTT
257 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGTTTCA-GATTTTTTAAAATTTT
* * * *
14826898 TTCGGAAGGATTTTTGACCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
321 TTCGGAAAGCTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-A
14826963 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
385 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
14827028 TCCAGACACTTTAATGGCTA-TGGTAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
450 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
14827092 GAGTTCTGGAGGTTTGCTGAGGGATAGCGGGCCAATATAAGCGCCAAGTACCAGTACCCATCGCA
515 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * * * *
14827157 CATCATGTTCGGACAACCCCCGACCCCTCCGATCGCCAGAACCCTAATG-CATCGGTCAGGTTCT
580 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
14827221 CCGGCGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACTAGCACATGGTCC-AGCC
645 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT-GCCCGAGCC
* * ** *
14827285 CAGCATTTGTTGCCGTGACCCTAGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
709 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * **
14827350 AGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTTGG
774 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGG
* ** *
14827415 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCAACCGGGTCCCCCTCTGTG
839 CCAGAGGGGCAGGATGCGCAAGCCGA-GATCGGCCGGGTCCCCCTCTG-A
* * **
14827465 TGCTGCGGATCCTACTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCT---G---C--C-G---TAACCCTCGGTCCAGT-TGATCTTAGACTGGGAATGAACTCCGTA
** * * ***
14827530 TGCCTAAGCCAACATACGAAATGAGCGGGCGGGCGG-GCAGGCGGGCACTACGCCAACCAGAGAG
53 TGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGCG-A-GCGGGCACTACGCTGGCCAGAGAG
* * *
14827594 GCGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTG
116 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
14827659 CCTGCCAATGCCATTTTTATGGCTTGGAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
181 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * ** * ** *
14827724 TTCATGGCCAGACGACTCATTTTCTATTTTTCATAATTTT-GAAACTTTTTACGGTTCGAGATTT
246 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGTTTC-AGATTT
* * *
14827788 TTTAAAATTTTTTC--ATAAGGTGTTTTGGCCCCAGAA-TTGGAAGATGTGATCCTTGTATTTTT
310 TTTAAAATTTTTTCGGA-AAGCT-TTTTGGCCCCA-AACTTGGTAGACGTGATCCTTGTATTTTT
* * *
14827850 GTTCGCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTG-AA
372 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
14827914 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAGTGCTC
437 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
** ** *
14827979 GATAACAGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
502 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
14828044 AGCACCCATCACCCATCATGTGCGCACACCCCTCGACCCCCCCGATCGTCAGAACCCCAATGCCG
567 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * *
14828109 TCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC-AGTGGAGAAAAATACGGCACCAGC
632 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGC
** * * *
14828173 ACATGCCCGAGCCCAGCATGTGCTGCTACAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGA
696 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
14828238 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
761 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
* * * * * **
14828303 GGCGCTCAGCCGACCATAGGGGCACGATGCGTAAGCCAGAGATTGGCCAAGTCCCCCTCTGAA
826 GGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC-GAGATCGGCCGGGTCCCCCTCTG-A
* * *
14828366 TGCTGCCGTAACCCTTGGTCCAATTGGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCAGTT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14828431 CTGAAGAAATGAGCCGGCGAGCTGACGACCGGGCACTACGCTGGCCAGAGAGACGGGATACGCAA
65 CCGACGAAACGAGCGGGCGAGC-GGCGAGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* *
14828496 GCCGTGGATCGATAAGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14828561 TTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14828626 GACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTGTAGTTTGAGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGT-GTTTCAGATTTTTTAAAATTTTTT
* *
14828691 GGGAAAGCTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
323 CGGAAAGCTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
14828756 CATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14828821 AGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14828886 TTCTCAAGGTTTG-TGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACTCATCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
14828950 CATGTGCGCATACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
583 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * *
14829015 GGCGATGCTTCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGGCCGAGCCCAG
647 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *** * * *
14829080 CAAGTGCTGCCACAACCTTCGGTCTAATCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGA
712 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
14829145 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAACGG-G-T---CCTG
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC--A-GGCGCTCAGCCGG
** ** * * * *** ** *
14829205 -TTG-TCGG--GGAT-CG---GTCG-GGTC-CCCCTCTCCATGCTGTCGA
839 CCAGAGGGGCAGGATGCGCAAGCCGAGATCGGCCGGGTCC-CCCTCT-GA
* * * * * *
14829245 TCCTACTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
1 ---TGCTGCCGTAACCCTCGGTCCAGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * ** * * *
14829310 CAACCGATGAAGCGAGTGGGTG-G-AACGA-CGGGCACTCCGCCGGCCAGAGAGACGGGATGCGT
62 CAACCGACGAAACGAGCGGGCGAGCGGCGAGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
* * *
14829372 AAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTACATGCCAATGC
127 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
14829437 CATTTTTATGGCCTGTAAATTCGTACAATGGTCCCTTAAACCTTCACATGAAGTTTCATGGCAAG
192 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * **
14829502 ACGACTCATTTTTTATTTTTCACGATTTTTGAAAC------T-TTTC------------A-----
257 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGTTTCAGATTTTTTAAAATTTTT
* ** * * *
14829543 -C-GAAA---TATTGGCCCCAAACTTCATACACATGATCCTTGTATTTTTGTTGGCATGCATAAA
322 TCGGAAAGCTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
***
14829603 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTTGTTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14829668 CAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGTGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14829733 GTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
517 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * * *
14829798 TCATGTGCGCACCCCCCCGCTCGGCCCCCCCGATCACCGAAACCCCAATGCTGTCAGTCAGGTTC
582 TCATGTGCGCA-CACCCC-C-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
*** * ** *
14829863 TCTAACAATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
644 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * *
14829928 CAGCATGTGCTATCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTT
709 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * ** *
14829993 AGATTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGCACTCAGCCGG
774 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGG
* * *
14830058 CCAGACGAGCAGGATGCGCAAGCCGAAGATCAGCCGGGT-CCCC-C---
839 CCAGAGGGGCAGGATGCGCAAGCCG-AGATCGGCCGGGTCCCCCTCTGA
* * *
14830102 T-CTG-CGT---GCT--G--C---TGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
1 TGCTGCCGTAACCCTCGGTCCAGTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
14830155 CGACGAAACGA----GCGAGC-G-G-GCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGC
66 CGACGAAACGAGCGGGCGAGCGGCGAGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
**
14830213 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * * *
14830278 TTTATGGCCTGTGAATTCATACAATGGCCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGATGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14830343 CTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTCTGGTTCAGGATTTTTTAAAACTTTTTCG
261 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGTTTCA-GATTTTTTAAAATTTTTTCG
* *** * * * *
14830408 GAAGGAGGTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTTTTTGCATGTACAAAAAA
325 GAAAGCTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
14830473 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG--------T---
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14830527 --AC-----T-G---C---CAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGCGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14830578 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
14830643 TGTGCGCACACCCCCGCGGCCCCCCCGATCGTCGAAACCCCAACG-C-TACTGGTCAGGTTCT-C
585 TGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGT-C-GGTCAGGTTCTCC
* * * *
14830705 --C---G----G-CGATGGTGCCCTGACGAAGAGAAATGTGACACCAGCACATGCCCGAGCCCAG
647 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
14830760 CATGTGCTGCCGCAACCCTCGGTCCCGTCCGATCTTGGACTGGGAATGAACTCTGTATGCTTAGA
712 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
** * * * * ** ***
14830825 CTTAGATTGAACTCCATATGCCTAAGGCAACCCATGAAACGAGCGTGTGGGTATTCAGCCGGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCA
* * * * ** * *
14830890 GA-GGGCCGAGATGCACAAGCAGGGGATCGGTTGGGTCACCCTCTGCG
842 GAGGGGCAG-GATGCGCAAGC-CGAGATCGGCCGGGTCCCCCTCTG-A
* * **
14830937 TGCTGCCGATCTTGCTGCAACAACCCTCAGTCCGGTCTGATCTTAGACTAGGG-ATGAACTTTGT
1 TGCTG-C---C--G-T-----AACCCTCGGTCCAGT-TGATCTTAGACT-GGGAATGAACTCCGT
* *
14831001 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGACCGGGCACTACGCCT-GCCAGAGA
52 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGC-GGCGAGCGGGCACTACG-CTGGCCAGAGA
* *
14831065 GACGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
115 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
14831130 GTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAG
180 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * **
14831195 TTTCATGGCAAGATGACTCGCTTTCTATTTTTCACGATTTTCAAAACTTTTTTGCGGTTTGGGAT
245 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC-TTTTTG-TGTTTCAGAT
* *
14831260 TTTTTAAAATTTTTTCAGAAGGAC-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
308 TTTTTAAAATTTTTTCGGAAAG-CTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
14831324 TTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
372 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * **
14831389 AAAGTGTTCCCATTTTAGACACGTTAATGGCTACTGGTGGCAAACCTGTAAAATCTCAAATGCTC
437 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * **
14831454 TTTAAGGGGGTGTGGGTTCTCGAGCTTTGATGAGGGATAGGGGGCCACTATAAGGGGGAAGTACC
502 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * ** * *
14831519 AGCACCCAACACACATCATGTGCGCACACCCCCCGGCCCCCCCCATCACCGGAACCCCAATACCA
567 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * *
14831584 TCGGTCAGG-T-T------A---TCCGATGATGGTGCCCTGACGAAGAAAAATTCGGCACCAACA
632 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * *
14831638 CATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGTAATGAA
697 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * *
14831703 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTTAGCCAACCCACGAAACGAGCGTGCAG
762 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG
* *** *
14831768 GCGCTCAGTCGGCCAGAGGGATTGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGTGTGC
827 GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGA-GATCGGCCGGGT-CCCC-C----T-C
14831833 TGCCGA
884 T---GA
* * ** *
14831839 TCCTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
1 ---TGCTGCCGTAACCCTCGGTCCAGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
14831904 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACG-TCGGCCAGAGAGACGGGATGC
62 CAACCGACGAAACGAGCGGGCGAGC-GGCGAGCGGGCACTACGCT-GGCCAGAGAGACGGGATGC
* *
14831968 GCAAGCCGTCGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
125 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
14832033 GCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
190 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * **
14832098 AGACGACTCGGTTTCTATTTTTCATGATTTTCGAAACTTTTTACGTTTCAGGATTTTTTAAAATT
255 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGTTTCA-GATTTTTTAAAATT
* * * *
14832163 TTTTC-AAAAGCGTTTTTGGTCCCAAACTTGGTAGCCTTGATCCTTGTATTTTTGTTGGCATGCA
319 TTTTCGGAAAGC-TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* **
14832227 CAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTA
383 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
14832292 ATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGAT
448 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
14832357 GTGAGATCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCA
513 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
14832422 CACATCATGTGCGCACACCCCCCGG-CTCCCTGATTGTCTGAACCCCAATG-C-T--GTC-GG--
578 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
14832479 -T-CGG-G-TTCTCCGACGATGGTGCCCCCG-CGAAGAAAAATGCGGCACCAGCAAATGCCTGAG
643 CTCCGGCGATGCTCCGACGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
*
14832539 CCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
707 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14832604 CTAAGCCAAC
Statistics
Matches: 4348, Mismatches: 580, Indels: 416
0.81 0.11 0.08
Matches are distributed among these distances:
828 4 0.00
829 180 0.04
830 5 0.00
831 1 0.00
834 1 0.00
835 1 0.00
836 3 0.00
837 184 0.04
838 2 0.00
839 1 0.00
840 37 0.01
841 53 0.01
842 112 0.03
843 2 0.00
844 4 0.00
845 2 0.00
847 1 0.00
848 182 0.04
849 65 0.01
850 2 0.00
851 193 0.04
852 4 0.00
853 5 0.00
854 5 0.00
855 1 0.00
856 1 0.00
857 5 0.00
858 3 0.00
859 1 0.00
860 44 0.01
861 6 0.00
862 1 0.00
863 5 0.00
864 11 0.00
866 1 0.00
867 102 0.02
868 184 0.04
869 134 0.03
870 6 0.00
872 1 0.00
877 1 0.00
878 186 0.04
879 10 0.00
880 2 0.00
881 3 0.00
882 68 0.02
883 1 0.00
884 2 0.00
885 8 0.00
886 2 0.00
887 6 0.00
888 3 0.00
889 244 0.06
890 180 0.04
891 425 0.10
892 284 0.07
893 468 0.11
894 124 0.03
895 3 0.00
897 60 0.01
898 3 0.00
899 39 0.01
900 195 0.04
901 440 0.10
902 29 0.01
903 1 0.00
904 1 0.00
905 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
TGCTGCCGTAACCCTCGGTCCAGTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGAGCGGCGAGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGTTTCAGATTTTTTAAAATTTTTTCGG
AAAGCTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGG
GGCAGGATGCGCAAGCCGAGATCGGCCGGGTCCCCCTCTGA
Found at i:14829993 original size:26 final size:26
Alignment explanation
Indices: 14829964--14830016 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14829954 CCGGTCCGAT
14829964 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* * *
14829990 CTTAGATTGGGAATGAATTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14830016 C
1 C
14830017 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14831715 original size:26 final size:26
Alignment explanation
Indices: 14831686--14831736 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14831676 CCGATCCGAT
*
14831686 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14831712 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14831737 CCCTTAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14834887 original size:26 final size:26
Alignment explanation
Indices: 14834858--14834910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14834848 CCGGTCCGAT
14834858 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14834884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14834910 C
1 C
14834911 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14835747 original size:26 final size:26
Alignment explanation
Indices: 14835711--14835763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14835701 CTGGTTGGAT
14835711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14835737 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14835763 C
1 C
14835764 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14836642 original size:26 final size:26
Alignment explanation
Indices: 14836613--14836663 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14836603 CGGTCCGATC
*
14836613 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
14836639 TTAGACTGGGAATGAAGTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14836664 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:14838803 original size:866 final size:864
Alignment explanation
Indices: 14835737--14841950 Score: 7307
Period size: 876 Copynumber: 7.1 Consensus size: 864
14835727 ACTCCGTATG
* * * ** *
14835737 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAGCCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * *
14835802 AGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGATCGGATCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14835867 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * * * *
14835932 CCGATGAAATGAGTGGGCGGGCAGGTGGGCGAGCACTACGCCGGCCAAAGAGACGGGATACGCAA
196 CCGACGAAACAAGCGGGC-GGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* **
14835997 GCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTATGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * * *
14836062 TTTTTATGGCTTGGAAATCCGTATAATGGTCCC-TAAGCCTTAACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * * *
14836126 GACTCCTTTTCTGTTTTTCATAATTTTTTAAACTTTTTACGGTTCTGG-TTTTTTAAAAATATTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTT
* * * * *
14836190 TTGGAAGGACTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTATGGTGGCATGCACCAA
453 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14836255 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTT-TGACCATTTGAAAAAAATGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
14836319 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14836384 GTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCGCCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14836449 TCATGTGCGCACACACCCCCGG-CCCCCCGATCGTCGGAACCCCAATACCGTCGATCAGGTTCTC
713 TCATGTGCGCACAC-CCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
14836513 CGACGATGCTTCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAACACATGCTCGACCCCA
777 C-A-GA-------A--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
14836578 GCATATGCTGCTGCAACCCTCGAT-TCGGTCCGAT
831 GCATGTGCTGCCGCAACCCTCGATCT-GGTCCGAT
*
14836612 CTTAGACTGGGAATGAACTTCGTATGTTTAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCC
1 CTTAGACT-GG---G-A------ATG---A-AC-----------TCCGTATGCCTAAGTCAACCA
* * * *
14836677 ACAAAATAAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCG
40 ACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* *** * * * * *
14836741 GGTCCCCCTCTGCGTGGTGCCGATCCTGCTGCCGTAACCCTCGATCCGATCCGATCTTCGACAGG
105 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * * * *
14836806 GAATGAACTCCTTATGCCTAAGCCAACCGATGAAACGAGAGGGTGGGCGGGCGGGCGGGCACTAC
170 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGG-CGGC-GGCGGGCGGGCACTAC
* * * * *
14836871 GTCGGCCAGAGAGACAGGAAGCGCATGCTGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACAT
233 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
14836936 CTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
298 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
14837001 CTTCACGGGAAATTTCATGGCAAGCCGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTG
363 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
* *
14837066 CGGTTCGGGATCTTATAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
428 CGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
14837131 TTTTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
493 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
14837196 CCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTTAAATC
558 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
14837261 TCAAATGCT-TATTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
623 TCAAATGCTCT-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * * *
14837325 GGCCTAGTACCAGAACCCATCACACATCATGTGGGCACACCCCCCCGG-CCCCCCGATCGCCGAA
687 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGACCCCCCGATCGTCGGA
* ** ** *
14837389 ACCCCAATACCGTCGGTCAGGTTCTTCGGCGATGCTCTGGTGATGGTGCCCCGGTGAAGAGAAAT
751 ACCCCAATGCCGTCGGTCAGGTTC-TC--C-A-------GAAATGGTGCCCCGACGAAGAAAAAT
* * * * * *
14837454 ACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGAAACCGTC-AGTCCGATCC-AT
805 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCTGGTCCGAT
* * * * * *
14837513 CTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGATCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * * *
14837578 CGGCTAAAGGGGCGAGATACGCATGCCAGGGATCGGTGGGGTCCCCCTCTGCGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * **
14837643 TACGGCCACAACCCTCTGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
14837708 CTGACGAAATAAGCGGGCGGGCAGGCGGGCGGGTACTACGCCTACCAGAGAGACGGGATGCCCAA
196 CCGACGAAACAAGCGGGC-GGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
14837773 GCTGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
14837838 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
14837903 GACTCATTTTCTATTTTTAACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
14837968 TGGAAGGAGTTTTGGCCCCAAACTTGGTCGACGTGATCTTTGTATTTTTCTTCGCATGCAAAAAA
454 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * **
14838033 AAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGCATCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14838098 AGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
14838163 TTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** * *
14838228 CATCTGTGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCAATCCCGTCGGTCAGGTTCTCCA
714 CATGTGCGCACACCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCA
* * * *
14838293 GAAATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCCGCATGTGCTGCCA
779 GAAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
*
14838358 CAACCTTCGATCTGGTCCGAT
844 CAACCCTCGATCTGGTCCGAT
* * * * * *
14838379 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCGACCAATGAAACAAGCGTGCAGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGC
* * * ** * * *
14838444 CGGCCAGAGGGGCAGGATACGCAAGTCGGGGATCGACCGAGTCCCCTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
14838509 TGCTACTACATCCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14838574 CCGACGAAACAAGCGGGTCGACAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAA
196 CCGACGAAACAAGCGGG-CGGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * **
14838639 GTCATGGATCGATAGGGTGGTCA-CTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
259 GCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
14838703 ATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14838768 CGACTCGTTTT-TGATTTTTCATGATTTTTGAAACTTTTTACGGTTGGGGATTTCTTAAAATATT
388 CGACTCGTTTTCT-ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
14838832 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGCACCA
452 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14838897 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
14838962 TC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
582 TCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
14839026 GAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCTATATAAGGGCCAAGTACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
14839091 CATCATGTGCGCACACCCCCCCGGGCCCCCAGTTC-ACTGGAACCCCAATGCCGTCGGTCAGGTT
711 CATCATGTGCGCACA-CCCCCCGGACCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTT
* * * * * *
14839155 CTCC-G--GTGATGCCCTGACGAAGAAAAATGTGGCACCTGCACATGCCCGAGCCCAGTATGTGC
774 CTCCAGAAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
14839217 TGTCATAACCCTCGGTCCAAGCCGATCTTAGA-CTGGGAATGAACTCTAGAT
839 TG--------C-C-G--CAA-CC---C-TCGATCT-GG--T---C-C--GAT
* * *
14839268 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCGTACGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * * *
14839333 CCGGCCAAAGGGGCAGGATGCGTAAGCCGAGGATCGATCGAGCCCCCCTCCGCATGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* *** * **
14839398 CTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATGAACTCTATATGCCTAAGCCA
130 CTGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * *
14839463 ACCAACGAAACGAGGGGGCGGGTGGGCCGACGGGCACTTCGTCGGCCAGAGAGACGGGATGCACC
195 ACCGACGAAACAAGCGGGC-GG-CGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
14839528 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
14839593 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCACGGCGAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
14839658 TGACTCGTTTTCTATTTTTCAATGATTTTTGAAACTTTTTGCGGTTCGGGTTTTTTTTTAATTTT
388 CGACTCGTTTTCTATTTTTC-ATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
14839723 TTCGAAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAA
452 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14839787 AAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-T
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14839851 CCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14839916 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
14839981 ATCATGTACGCACA-----C---CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
712 ATCATGTGCGCACACCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * ** *
14840038 CGACGATGCTCCGACGATGATGCCCCGACGAAGAAAAATGTGGCACCAGCATGTGCTGCCGTAAC
777 C-A-GA-------A--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC--CCG--AG
* * * * * * *
14840103 CCTCGGTCCA-GT-CTGATCTCAGA--CTGGGA-ATGAACTTCGTAT
827 CC-CAG--CATGTGCTG-CCGCA-ACCCT-CGATCTG--GTCCG-AT
* * ** *
14840145 GCTTAGACTGGGAATGAAATCCATATGCCTAAGTCAACCCGCGAAACAAGCGTGTGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAG
* * * * *
14840210 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTTTGCGTGGTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
14840275 CTGCTG-TCGCAACCCT-GGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTAAGCCTAAGCC
130 CTGCTGCT-ACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * *
14840338 AAAGGACGATACAAGCGGGC-G-GGCGGGCAGGCACTACG-CTGGCCAGCGAGACGGGATGCGCA
194 AACCGACGAAACAAGCGGGCGGCGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCA
*
14840400 AGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
14840465 ATTTTTATGGCTTGTAAACTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14840530 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* **
14840595 TTGGAAGGAGTTTTGGACCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
453 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14840660 ACAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14840725 CAGACTCTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* **
14840790 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTAAAAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14840855 TCATGTGCGCACACCCCCC-GACCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCTC
713 TCATGTGCGCACACCCCCCGGACCCCCCGATCGTCGGAACCCCAAT---GCC-GTC-GG-T-C-A
* ** * * * *
14840919 GGTGATGCTCCGGTGATGGTGCCGCGATGAAGAAAAATGCGGCAACAGCACATGCCCGAGCCCAA
770 GGT--T-CTCCAGAAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
14840984 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
832 CATGTGCTGCCGCAACCCTCGATCTGGTCCGAT
* * * * * * **
14841017 CTTAGACT-AGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTGTGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGC
* * * *
14841081 CGGCCAGAGGGGCGGGATACGCAAGCCGCGGATCGGTCGGGTCCCCTTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14841146 TGCTGCTGCAACCCT-GCATTCGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCA
131 TGCTGCTACAACCCTCG-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
14841210 ACCGACGAAAGGAGCAGGCGAGCGGGCGGGCGGGCACTACG-CTGACCAGAGAGATGGGATACGC
195 ACCGACGAAACAAGCGGGCG-GC-GGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGC
* * *
14841274 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
14841339 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
14841404 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAG-GGTTCCGAATTTTTTAAAATTT
387 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GCGGTTCGGGATTTTTTAAAATTT
* *
14841468 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCCCA
451 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * * *
14841533 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGGCCGTTTGAAAAAAATGCCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
14841598 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * * *
14841663 GAGTTCTCGAGGTTTGATGAGAAATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATTGCT
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
14841728 CATCATGTGCGCACACCCCCC-GACCCCCTGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCT
711 CATCATGTGCGCACACCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
14841792 CCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCC
776 CC-A-GA---------AATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
14841857 AGCATGTGCTGCTGCAACCCTC-AGTCCGGTCCGAT
830 AGCATGTGCTGCCGCAACCCTCGA-TCTGGTCCGAT
* * * * * *
14841892 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACAAGTGTGTGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCG
14841951 GGTGGGAAAA
Statistics
Matches: 4613, Mismatches: 564, Indels: 323
0.84 0.10 0.06
Matches are distributed among these distances:
864 54 0.01
865 69 0.01
866 646 0.14
867 49 0.01
868 1 0.00
869 1 0.00
870 119 0.03
871 144 0.03
872 258 0.06
873 145 0.03
874 7 0.00
875 667 0.14
876 709 0.15
877 127 0.03
878 5 0.00
879 1 0.00
880 97 0.02
881 6 0.00
882 3 0.00
883 10 0.00
884 3 0.00
885 2 0.00
886 6 0.00
887 3 0.00
888 5 0.00
889 146 0.03
890 437 0.09
891 87 0.02
894 35 0.01
896 3 0.00
897 1 0.00
898 3 0.00
899 5 0.00
900 232 0.05
901 249 0.05
902 271 0.06
903 3 0.00
905 3 0.00
911 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (864 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGGCGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGA
AATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGATCTGGTCCGAT
Found at i:14840171 original size:26 final size:26
Alignment explanation
Indices: 14840123--14840172 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14840113 GTCTGATCTC
* * *
14840123 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAAATCCATATGCTT
14840149 AGACTGGGAATGAAATCCATATGC
1 AGACTGGGAATGAAATCCATATGC
14840173 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAAATCCATATGCTT
Found at i:14841409 original size:875 final size:875
Alignment explanation
Indices: 14835737--14841950 Score: 7613
Period size: 875 Copynumber: 7.1 Consensus size: 875
14835727 ACTCCGTATG
* * ** *
14835737 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAGCCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * *
14835802 AGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGATCGGATCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
*
14835867 TGCTGCCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * * * * *
14835931 ACCGATGAAATGAGTGGGCGGGCAGGTGGGCGAGCACTACGCCGGCCAAAGAGACGGGATACGCA
195 ACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCA
* **
14835996 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTATGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * * * *
14836061 ATTTTTATGGCTTGGAAATCCGTATAATGGTCCC-TAAGCCTTAACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * *
14836125 CGACTCCTTTTCTGTTTTTCATAATTTTTTAAACTTTTTACGGTTCTGG-TTTTTTAAAAATATT
390 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTT
* * * * *
14836189 TTTGGAAGGACTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTATGGTGGCATGCACCA
454 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14836254 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTT-TGACCATTTGAAAAAAATGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
14836318 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14836383 AGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCGCCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
14836448 ATCATGTGCGCACACACCCCCGGCCCCCCGATCGTCGGAACCCCAATACCGTCGATCAGGTTCTC
714 ATCATGTGCGCACAC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-
* * * * * * * *
14836513 CGACGATGCTTCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAACACATGCTCGACCCCA
777 CGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
14836578 GCATATGCTGCTGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
842 GCATGTGCTGCCGCAA-CC-C---TC-G---G----T---CT-GG--T---C--CG-AT
* * * * *
14836637 GTTTAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTGCGGGCACTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* *
14836702 CTGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGGTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * * * * *
14836766 CTGCTGCCGTAACCCTCGATCCGATCCGATCTTCGACAGGGAATGAACTCCTTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14836831 ACCGATGAAACGAG-AGGGTGGGCGGGCGGGCGGGCACTACG-TCGGCCAGAGAGACAGGAAGCG
195 ACCGACGAAACGAGCA-GGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCG
* * * * *
14836894 CATGCTGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGCATGTCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
14836959 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGGGAAATTTCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
14837024 GCCGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATCTTATAAAATTT
388 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* *
14837089 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCCCA
453 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
14837154 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14837219 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTTAAATCTCAAATGCT-TATTAAGGGTGTG
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTG
* * *
14837283 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGAACCCATCAC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
14837348 ACATCATGTGGGCACACCCCCCCGGCCCCCCGATCGCCGAAACCCCAATACCGTCGGTCAGGTTC
712 ACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
14837413 TTCGGCGATGCTCTGGTGATGGTGCCCCGGTGAAGAGAAATACGGCACCAGCACATGCCCGAGCC
776 -TCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
14837478 CAACATGTGCTGCCGAAACCGTCAGTCCGATCC-AT
840 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * *
14837513 CTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGATCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * * *
14837578 CGGCTAAAGGGGCGAGATACGCATGCCAGGGATCGGTGGGGTCCCCCTCTGCGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * **
14837643 TACGGCCACAACCCTCTG-TCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTC-GATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * *
14837707 ACTGACGAAATAAGCGGGCGGGCAGGCGGGCGGGTACTACGCCT-ACCAGAGAGACGGGATGCCC
195 ACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGC
* * * *
14837771 AAGCTGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
14837836 CATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
14837901 ACGACTCATTTTCTATTTTTAACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
14837966 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTCGACGTGATCTTTGTATTTTTCTTCGCATGCAAAA
454 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * **
14838031 AAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGCATCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14838096 TCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14838161 AGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** * *
14838226 ATCATCTGTGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCAATCCCGTCGGTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
** * * * *
14838291 --C-A-------GAAATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCCG
778 GGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
14838346 CATGTGCTGCCACAACCTTCGATCTGGTCCGAT
843 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * * * *
14838379 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCGACCAATGAAACAAGCGTGCAGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * ** * * *
14838444 CGGCCAGAGGGGCAGGATACGCAAGTCGGGGATCGACCGAGTCCCCTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14838509 TGCTACTACATCCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14838574 CCGACGAAACAAGCGGGTC-GACAGGCGGGCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGT
196 CCGACGAAACGAGCAGG-CGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGC
* * * **
14838637 AAGTCATGGATCGATAGGGTGGTCA-CTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATG
259 AAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
*
14838701 CCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
14838766 GACGACTCGTTTT-TGATTTTTCATGATTTTTGAAACTTTTTACGGTTGGGGATTTCTTAAAATA
388 GACGACTCGTTTTCT-ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* *
14838830 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGCAC
452 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
14838895 CAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
14838960 TTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
582 TTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14839024 GTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCTATATAAGGGCCAAGTACCAGCACCCATCG
646 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
14839089 CACATCATGTGCGCACACCCCCCCGGGCCCCCAGTTC-ACTGGAACCCCAATGCCGTCGGTCAGG
711 CACATCATGTGCGCACA-CCCCCC-GGCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGG
* * * *
14839153 TTCTC--CG--G-T-----GA---TGCCCTGACGAAGAAAAATGTGGCACCTGCACATGCCCGAG
773 TTCTCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* ** *
14839205 CCCAGTATGTGCTGTCATAACCCTCGGTCCAAGCCGATCTTAGACTGGGAATGAACTCTAGAT
838 CCCAGCATGTGCTG--------C-C-G--CAA-CC---CTCGGTCT-GG--T---C-C--GAT
** * *
14839268 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCGTACGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * * *
14839333 CCGGCCAAAGGGGCAGGATGCGTAAGCCGAGGATCGATCGAGCCCCCCTCCGCATGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * * **
14839398 CTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATGAACTCTATATGCCTAAGCCA
130 CTGCTGCCACAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * *
14839463 ACCAACGAAACGAGGGGGCGGGTGGGCCGACGGGCACTTCG-TCGGCCAGAGAGACGGGATGCAC
195 ACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGC
*
14839527 CAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
14839592 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCACGGCGAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * **
14839657 ATGACTCGTTTTCTATTTTTCAATGATTTTTGAAACTTTTTGCGGTTCGGGTTTTTTTTTAATTT
389 ACGACTCGTTTTCTATTTTTC-ATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* * *
14839722 TTTCGAAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACA
453 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
14839786 AAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
14839850 TCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
14839915 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
14839980 CATCATGTACGCACA-----C--CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
713 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-
* * * * * ** *
14840038 CGACGATGCTCCGACGATGATGCCCCGACGAAGAAAAATGTGGCACCAGCATGTGCTGCCGTAAC
777 CGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGC--CCG--AG
* * * * ** * *
14840103 CCTCGGTCCA-GT-CTGATCTCAGA--CTGGGAATGAACTTCGTAT
838 CC-CAG--CATGTGCTG-CCGCA-ACCCTCGGTCTG--GTCCG-AT
* * * *
14840145 GCTTAGACTGGGAATGAAATCCATATGCCTAAGTCAACCCGCGAAACAAGCGTGTGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * *
14840210 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTTTGCGTGGTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
14840275 CTGCTGTCGCAACCCT-G-GTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTAAGCCTAAGCC
130 CTGCTGCCACAACCCTCGATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * *
14840338 AAAGGACGATAC-A--A-GCGGGCGGGCGGGCAGGCACTACGCTGGCCAGCGAGACGGGATGCGC
194 AACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
*
14840399 AAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
14840464 CATTTTTATGGCTTGTAAACTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
14840529 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* **
14840594 TTTGGAAGGAGTTTTGGACCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
14840659 AACAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14840724 TCAGACTCTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
14840789 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTAAAAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
14840854 ATCATGTGCGCACACCCCCCGACCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT-CTC
* * * * *
14840919 GGTGATGCTCCGGTGATGGTGCCGCGATGAAGAAAAATGCGGCAACAGCACATGCCCGAGCCCAA
778 GGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
14840984 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
843 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * * **
14841017 CTTAGACT-AGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTGTGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * *
14841081 CGGCCAGAGGGGCGGGATACGCAAGCCGCGGATCGGTCGGGTCCCCTTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** *
14841146 TGCTGCTGCAACCCT-GCATTCGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCA
131 TGCTGCCACAACCCTCG-ATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14841210 ACCGACGAAAGGAGCAGGCGAGCGGGCGGGCGGGCACTACGCTGACCAGAGAGATGGGATACGCA
195 ACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCA
* * *
14841275 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
14841340 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14841405 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAG-GGTTCCGAATTTTTTAAAATTTT
390 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GCGGTTCGGGATTTTTTAAAATTTT
* *
14841469 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCCCAA
454 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
14841534 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGGCCGTTTGAAAAAAATGCCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14841599 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** * * *
14841664 AGTTCTCGAGGTTTGATGAGAAATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATTGCTC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14841729 ATCATGTGCGCACACCCCCCGACCCCCTGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
714 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C
** * * *
14841794 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAG
778 GGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
14841859 CATGTGCTGCTGCAACCCTCAGTCCGGTCCGAT
843 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * * *
14841892 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACAAGTGTGTGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCG
14841951 GGTGGGAAAA
Statistics
Matches: 4634, Mismatches: 567, Indels: 249
0.85 0.10 0.05
Matches are distributed among these distances:
864 49 0.01
865 69 0.01
866 641 0.14
867 45 0.01
868 2 0.00
870 117 0.03
871 133 0.03
872 264 0.06
873 145 0.03
874 8 0.00
875 713 0.15
876 699 0.15
877 129 0.03
878 7 0.00
880 122 0.03
881 6 0.00
882 2 0.00
883 10 0.00
885 2 0.00
886 3 0.00
887 1 0.00
888 2 0.00
889 145 0.03
890 431 0.09
891 85 0.02
893 1 0.00
894 32 0.01
896 3 0.00
897 2 0.00
898 3 0.00
899 5 0.00
900 227 0.05
901 256 0.06
902 273 0.06
903 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (875 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGGC
GATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCTGGTCCGAT
Found at i:14842451 original size:26 final size:26
Alignment explanation
Indices: 14842415--14842467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14842405 GAGCCCAACA
14842415 TGTGCTTAGACTGGGAATGAACTCCG
1 TGTGCTTAGACTGGGAATGAACTCCG
*
14842441 TGTGTTTAGACTGGGAATGAACTCCG
1 TGTGCTTAGACTGGGAATGAACTCCG
14842467 T
1 T
14842468 ATGACTAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
TGTGCTTAGACTGGGAATGAACTCCG
Found at i:14842773 original size:184 final size:184
Alignment explanation
Indices: 14842419--14842812 Score: 461
Period size: 184 Copynumber: 2.1 Consensus size: 184
14842409 CCAACATGTG
* * *
14842419 CTTAGACTGGGAATGAACTCCGTGTGTTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGAATGAACTCCGTACGACTAAGTCAAACC
* * * * * * *
14842484 ACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGATGAAATGCGCAAGCTGGGGATTGACCG
66 AAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGACGAAATGCGCAAGCCGAGGATCGACCA
* * *
14842549 GGTCCCCCTCTGCGTCCTACCAATCCTGCAGCCACAACCCT-TGATCCGGTCCATT
131 GGTCCCCCTCTACGTCCTACCAATCCTACAGCCACAACCCTCAG-TCCGGTCCA-T
* *
14842604 CTTAGACTAGGAATGAACTCCGTATGTTTAGACT-GGAATGAACTCCGTACGCCTAAGTCAAACC
1 CTTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGAATGAACTCCGTACGACTAAGTCAAACC
* * ** * *
14842668 AAGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGTGG-CGGGATGCGCAAGCCGAGGATCGGCT
66 AAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAG-GGACGAAATGCGCAAGCCGAGGATCGACC
* * * * ** ** *
14842732 AGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCAGTTTGGTCGAT
130 AGGTCCCCCTCTACGTCCTACCAATCCTACAGCCACAACCCTCAGTCCGGTCCAT
*
14842787 CTTACACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14842813 CCTAAGCCAA
Statistics
Matches: 175, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 25 0.14
184 115 0.66
185 35 0.20
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
CTTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGAATGAACTCCGTACGACTAAGTCAAACC
AAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGACGAAATGCGCAAGCCGAGGATCGACCA
GGTCCCCCTCTACGTCCTACCAATCCTACAGCCACAACCCTCAGTCCGGTCCAT
Found at i:14846854 original size:25 final size:26
Alignment explanation
Indices: 14846820--14846871 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14846810 CCGATCCGAT
* *
14846820 CTTAGACT-GGAATGAATTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14846845 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14846871 C
1 C
14846872 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14848325 original size:350 final size:350
Alignment explanation
Indices: 14847684--14848578 Score: 1495
Period size: 350 Copynumber: 2.6 Consensus size: 350
14847674 CCGGTCTGAT
* * ** *
14847684 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
* ** *
14847749 CGACTAGAGGGGCGGGATGCACAAGCC-GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATG
66 CGACCAGAGGTACGGGATGCGCAAGCCTG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATG
* *
14847813 CTGCTGCAACAACCCTCGGTCCAGACCAATCTTAAACTGGGAATGAACTCTGTTTGCTTAAGCCA
130 CTGCTGCAACAACCCTCGGTCCAGACCAATCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCA
*
14847878 ATGTCGTCGACCAGGTTCTCCGGCCATGCTCTGACGATGCTCGAGCGATGGTGCCCTGACGAAGA
195 ATGTCGTCGACCAGGTTCTCCGGCCATGCTCTGACGATGCTCGAGCGATGGTGCCCCGACGAAGA
*
14847943 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGAT
260 AAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGAT
*
14848008 CCTAGATTGCGAGTGAACTCCATATG
325 CCTAGATTGAGAGTGAACTCCATATG
14848034 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
14848099 CGACCAGAGGTACGGGATGCGCAAGCCTGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATGC
66 CGACCAGAGGTACGGGATGCGCAAGCCTGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATGC
*
14848164 TGCTGCAACAACCCTCGGTCCAGACCAATCTTAAACTGGGAATGAACTTTGTATGCCTAAGCCAA
131 TGCTGCAACAACCCTCGGTCCAGACCAATCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAA
*
14848229 TGTCGTCGGCCAGGTTCTCCGGCCATGCTCTGACGATGCTCGAGCGATGGTGCCCCGACGAAGAA
196 TGTCGTCGACCAGGTTCTCCGGCCATGCTCTGACGATGCTCGAGCGATGGTGCCCCGACGAAGAA
14848294 AAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC
261 AAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC
14848359 CTAGATTGAGAGTGAACTCCATATG
326 CTAGATTGAGAGTGAACTCCATATG
* *
14848384 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
* * *
14848449 CGACCAGAGGTACGGGATGCGCAAGCCTGGGATCGGTCGGGTCCCCTTCTGTGTGCTGTCGATCC
66 CGACCAGAGGTACGGGATGCGCAAGCCTGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATGC
* ** * * * * * * *
14848514 TGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGACCTCTGTATCCCTAAGCCAA
131 TGCTGCAACAACCCTCGGTCCAGACCAATCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAA
14848579 CCGATGAAAT
Statistics
Matches: 512, Mismatches: 32, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
350 511 1.00
351 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (350 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
CGACCAGAGGTACGGGATGCGCAAGCCTGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATGC
TGCTGCAACAACCCTCGGTCCAGACCAATCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAA
TGTCGTCGACCAGGTTCTCCGGCCATGCTCTGACGATGCTCGAGCGATGGTGCCCCGACGAAGAA
AAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC
CTAGATTGAGAGTGAACTCCATATG
Found at i:14849763 original size:26 final size:26
Alignment explanation
Indices: 14849734--14849783 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14849724 TCTGATTTTT
14849734 GACTGGGAATGAACTCCGTATGCCTA
1 GACTGGGAATGAACTCCGTATGCCTA
14849760 GACTGGGAATGAACTCCGTATGCC
1 GACTGGGAATGAACTCCGTATGCC
14849784 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCCTA
Found at i:14849947 original size:468 final size:474
Alignment explanation
Indices: 14849060--14849954 Score: 1177
Period size: 468 Copynumber: 1.9 Consensus size: 474
14849050 AGGGATAGGG
* * * * * *
14849060 GGCCAATATAAGGGCCCAGTACCAGCACCCATCGGACATCATGTGCGCACACCCCCTCGGCCCCC
1 GGCCAATACAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
* * * *
14849125 CCGATCGTCGGAACCCCGATGCCGCCGGTTAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCG
66 CCGATCCTCGAAACCCCAATGCCGCCGGTCAGG-T-TCT-GC-AT-CTCCGGCGATGGTGCCCCG
* * * *
14849190 ACGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTG
126 ACGAAAAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTGCTACCACAACCCTCGGTCCG
* * * *
14849255 ATCCAATCTTATATTGGGAATGAAATCCGTATGCTTAGACTAGGAATGAACTCGGTATGCCTAAG
191 ATCCAATCTTATACTGGGAATGAAATCCGTATGCCTAGACTAGGAATGAACTCCGTATGCCCAAG
* * * * *
14849320 TCAACACATAAAATGAGTGTGCGGGTGCTCAGCCGGCAAGAAGGGCTAGATGTGCAAGCCGGGGA
256 TCAACACACAAAACGAGCGTGCGGGTGCTCAGCCAGCAAGAAGGGCGAGATGTGCAAGCCGGGGA
* *
14849385 TCGACCGGGTCCCCCTCTGCGTGCTGCCATTCCTACTACTACAACCCTCGGTTCGGTCTGATCTT
321 TCGACCGGGTCCCCCTCTGCGAGCTGCCATTCCTACTACTACAACCCTCGATTCGGTCTGATCTT
*
14849450 AGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACAAAACAAACGGGCTAGCAGGTGGGCGG
386 AGACTGGGAATGAACTCCCTATCCCTAAGCCAACCGACAAAACAAACGGGCTAGCAGGTGGGCGG
14849515 GCACTACGCTGGCCAGAGAGACAA
451 GCACTACGCTGGCCAGAGAGACAA
*
14849539 GGCCAATACAAGGGACAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
1 GGCCAATACAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
14849604 CCGATTCCT-GAAACCCCAATGCCGCCGGTCAGG-T-T-C-T-T-CGGCGATGGTGCCCCGACGA
66 CCGA-TCCTCGAAACCCCAATGCCGCCGGTCAGGTTCTGCATCTCCGGCGATGGTGCCCCGACGA
* *** *
14849662 AGAAAAATACGGCACCAACACATG-CTCGAGCCCAGCATGTGCTATGGCAACCCTCGGTCCGGTC
130 AAAAAAATACGGCACCAACACATGCCT-GAGCCCAGCATGTGCTACCACAACCCTCGGTCCGATC
** * * *
14849726 TGAT-TTTTGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCCAAGTC
194 CAATCTTAT-ACTGGGAATGAAATCCGTATGCCTAGACTAGGAATGAACTCCGTATGCCCAAGTC
* * * * * *
14849790 AACCCACGAAACGAGCGTGTGGGTGCTCAGTCAGCCAGAAGGGCGAGATGTGCAAGTCGGGGATC
258 AACACACAAAACGAGCGTGCGGGTGCTCAGCCAGCAAGAAGGGCGAGATGTGCAAGCCGGGGATC
* *
14849855 -AGTCGGGTCCCCCTCTGCGAGCTGCCGA-TCCTGCTAC-AGCAACCCTCGA-TCTGGTCTGATC
323 GA-CCGGGTCCCCCTCTGCGAGCTGCC-ATTCCTACTACTA-CAACCCTCGATTC-GGTCTGATC
*
14849916 TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGA
384 TTAGACTGGGAATGAACTCCCTATCCCTAAGCCAACCGA
14849955 TGAAACGTGC
Statistics
Matches: 363, Mismatches: 46, Indels: 25
0.84 0.11 0.06
Matches are distributed among these distances:
467 9 0.02
468 262 0.72
469 2 0.01
471 1 0.00
473 1 0.00
475 1 0.00
476 1 0.00
479 83 0.23
480 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (474 bp):
GGCCAATACAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
CCGATCCTCGAAACCCCAATGCCGCCGGTCAGGTTCTGCATCTCCGGCGATGGTGCCCCGACGAA
AAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGATCCA
ATCTTATACTGGGAATGAAATCCGTATGCCTAGACTAGGAATGAACTCCGTATGCCCAAGTCAAC
ACACAAAACGAGCGTGCGGGTGCTCAGCCAGCAAGAAGGGCGAGATGTGCAAGCCGGGGATCGAC
CGGGTCCCCCTCTGCGAGCTGCCATTCCTACTACTACAACCCTCGATTCGGTCTGATCTTAGACT
GGGAATGAACTCCCTATCCCTAAGCCAACCGACAAAACAAACGGGCTAGCAGGTGGGCGGGCACT
ACGCTGGCCAGAGAGACAA
Found at i:14852748 original size:710 final size:710
Alignment explanation
Indices: 14850749--14853458 Score: 3530
Period size: 718 Copynumber: 3.8 Consensus size: 710
14850739 ATGCACAAGT
* * * *
14850749 CGCAACCCTT-GGACCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAT
1 CGCAA-CCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * ** *
14850813 GAAACGAGCAGGCGGGCGGGTGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCATGCCGT
65 GAAA--TG-A-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
14850878 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTTTT
126 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
14850943 ATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTT
191 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
* * * *
14851008 GTTTTCTATTTTTCATGATTTTTGATACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAA
256 GTTTT-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * *
14851073 GGAGTTTTGGCCCAAAACTTGGTAGACGTTATTCTTGTATTTTTGTTGGCATGCACAAAAAAATT
320 GGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
14851138 CAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
385 CAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
14851203 CTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
449 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
14851268 GAGGTTTGATGAGGGATAGGGGCCCAATATAGGGGCCAAGTACCAGCACCCATCACACATCATGT
514 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * **
14851333 GCGCACACCCCCCGGCCCCCCCGATCATCGGAACTCCAATGCCGTCAGTCAGGTTCTCTGACGGC
579 GCGCACACCCCCCGG--CCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGAT
* * *
14851398 GATCTGGCGATGGTGCCCCGACTAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTG
642 GCTCCGACGATGGTGCCCCGACTAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTG
14851463 CTGC
707 CTGC
* * * * *
14851467 CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAAGCCAACCGACG
1 CGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * *
14851532 AATTGAGCGGGCGGGCGAGCGGGTAGGCAGTATGCCGGCCAGAGAGACGGGATGTGCCAGTCGTG
66 AAATGAGCGGGCGGGCG-G-GCG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * *
14851597 GATCGATAGGGCGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCCTGCTAATGCCATTTTCA
127 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
14851662 TGGCTTGTAAATTTATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGACAAGATGACTCG
192 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
* * *
14851727 TTTCCTATTTTTCACGATTTTTGTAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
257 TTT-TTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
14851792 GAGTTTTGGCCCCAAACCTGGTAGATGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTC
321 GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
14851857 AGCTAAAAACTC-AGAGTGTACAAGATTTCATTACCATTTGAAAAAAGTGTCCCCATTTCAGACA
386 AGCTAAAAACTCGA-AGTGTACAAGATTT-GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
14851921 CTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTC
449 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
14851986 GAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGT
514 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
14852051 GTGCACACCCCCCGGCCCCCTATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
579 GCGCACACCCCCCGGCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGC
** *
14852116 TCCGACGATGGTGCCCCGA-TGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
644 TCCGACGATGGTGCCCCGACT-AAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGC
14852180 TGC
708 TGC
*
14852183 CGCAACCTTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
*
14852248 AAATGAGCGGGCGGGCGGGCGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
66 AAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
14852313 AATAGGGTGGTAGGTGGGTTTAGGCACAGCTTCATATCTCTGCATGCCAATGCCATTTTTATTGC
131 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * * *
14852378 TTATAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGTTTT
196 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
*
14852443 TATTTTTCATGA-TTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGT
261 TATTTTTCATGATTTTTG-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
14852507 TTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCAGGCA-TAAAAAACTCAGCT
325 TTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
14852571 AAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTA
390 AAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
14852636 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTAGAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * **
14852701 TCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGCACGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * ** * *
14852766 CACCACCCCAGCCCCGCGATCG-CCGAAACCCCAACACCGTCGATCAGGTTCTCTGGCGATGCTC
584 CACC-CCCCGGCCCC-CGATCGTCAG-AACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTC
14852830 CGACGA---T-----G-----G-----T---------G--C---CCC--G----GCATGTGCTGC
646 CGACGATGGTGCCCCGACTAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGC
* ** * * * *
14852857 CGCAACCCTCGGTTTGATCTGATCTTAGATTGGGAATAG-ACTCTGTGTGCCTAAGCCAACCGAC
1 CGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAAT-GAACTCCGTATGCCTAAGCCAACCGAC
** * * * * *
14852921 TTAACGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCGAGCCGTAGAT
65 GAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
14852986 CGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACGTGCCACTGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
14853051 CTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
* * * ** * * * *
14853116 TCTATTTTTCACGATTTTGGAAACTTTTTAGGGTTCAAGATTTTTTAAGATTTTTTTGGAATGAT
260 T-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* ** * * * * *
14853181 TTTTGGCCCCAAACTTGGTAAACATGGTCCTTGTATTTTTTTTGGAATGTACAAAAAAAATCAGC
324 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
14853246 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTT
389 TAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * * *
14853311 AATGGCTACTGGTAGCAAACCTGTAAAAACTCAAATACTCTTTAAGGGGGGGTGAGTTTTTGAGG
453 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
14853376 TTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC
518 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
14853441 ACACGCCCCCCGGCCCCC
583 ACA--CCCCCCGGCCCCC
14853459 CCAATCACCG
Statistics
Matches: 1771, Mismatches: 200, Indels: 84
0.86 0.10 0.04
Matches are distributed among these distances:
674 240 0.14
675 92 0.05
676 197 0.11
677 9 0.01
678 3 0.00
680 3 0.00
683 1 0.00
685 1 0.00
694 1 0.00
699 1 0.00
704 1 0.00
709 1 0.00
710 196 0.11
711 117 0.07
712 195 0.11
714 12 0.01
715 4 0.00
716 179 0.10
717 7 0.00
718 511 0.29
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (710 bp):
CGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACG
ATGGTGCCCCGACTAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGC
Found at i:14854246 original size:26 final size:26
Alignment explanation
Indices: 14854210--14854262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14854200 CCGGTTTGAT
*
14854210 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14854236 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14854262 C
1 C
14854263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14854984 original size:26 final size:26
Alignment explanation
Indices: 14854955--14855007 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14854945 CCGATCCGAT
14854955 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14854981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14855007 C
1 C
14855008 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14855888 original size:26 final size:26
Alignment explanation
Indices: 14855859--14855911 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14855849 CCGATCTGAT
14855859 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
14855885 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14855911 C
1 C
14855912 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14856555 original size:898 final size:886
Alignment explanation
Indices: 14854559--14857246 Score: 3362
Period size: 898 Copynumber: 3.0 Consensus size: 886
14854549 AGCGATAGAG
**
14854559 TGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGT-AGT
1 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTC-TAAGT
* *
14854623 GTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCA
64 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * * *
14854688 GCAAACATGTAAAATCTGAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAGCGATA
129 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTGATAAGGGATA
*
14854753 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CGACCC
193 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCC
* ** * * *
14854817 CCCTATCGTCGAAACTCCAATGCCATCGGTTAGGGTCTCCGACGATGCTCCGACGATGGTGCCCC
258 CCCAATCGTCGAAAC-CCAATGCCGCCGGTCAGGTTCTCCGGC-ATGCTCCG--GATGGTGCCCC
* * * * * * * ***
14854882 GAGAAAGAGAAATGTGGCACCAGTACATGCTCGTGCCCAGCATGTGCTGTCGCAGCCCTCGGTCC
319 GAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA-CCCTCAACCC
14854947 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
383 GAT-CGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * *
14855012 GTCAACCCACGAAATGAGCGTGCGGGCACTCTACC-GCCCAAAGGGGCAGGATACGCAAGCCGAG
446 GTCAACCCACGAAACGAGCGTGCGGGTGCTC-ACCAG-CCAAAGGGGTAGGATGCACAAGCCGGG
* * * *
14855076 GATCGGTCGGGTCCCCCTCTGTGTGTTACCGAT-CTGTTGCCACAACCCTC-GATCCGGTCCGAT
509 GATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACAACCCTCAG-TCCAGTCCGAT
* *
14855139 CTTAGAC-TGTGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGG
573 CTTAGACTTG-GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGGTGG
* * * * * *
14855203 GCGAGCATTAC-GGCGACCAAAG-AGACGGGATGCGCAAGCCGTGGATCAATAGGGTGCTAGGTG
637 GCGGGCACTACGGGC-A-CTAAGCCGAC--GA---GCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
14855266 GGTTTAGGCACATCCTCATATTT-TTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATTC
695 GGTTTAGGCACATCTTCATATTTCTAT--GTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
14855330 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
758 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * * **
14855395 TTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCTTAACT
823 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
14855460 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCTAAGTG
* *
14855525 TACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
65 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14855590 CAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCGAGGATTGACAAGGAATAG
130 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTGATAAGGGATAG
*
14855655 GGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCC
194 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCTCGGCC
* *
14855720 CCCCAATCGTCGAAACCCTAATGCCGCCGATCAAGTTCTCCGGCAATGCTCCGGTGATGGTGCCC
257 CCCCAATCGTCGAAACCC-AATGCCGCCGGTCAGGTTCTCCGGC-ATGCTCC-G-GATGGTGCCC
* * *
14855785 CGGGGAAGAAAAATGCGAG-ACCAGCACCTGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCAAC
318 CGAGGAAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-ACCCTCAAC
*
14855849 CCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCT
381 CCGATC-GATCTTAGACTGGGAATGAACTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
14855914 AAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCCAG-TAAGAGGGGTGGGATGCCCAAGCCG
444 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA-CCAGCCAA-AGGGGTAGGATGCACAAGCCG
* ** * * * *
14855978 GGGAACGACCAGGTCCCCCTCTGTGTGCTGCCAATCCTACTGTCACAACCCTCAGTCCAGTCCGA
507 GGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAGTCCGA
* * *
14856043 TCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGTGGGTGG
572 TCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGGTGG
** ** * * ** * **
14856108 ATGGGCA-GGCGGGCACTACGCCGACCAAAAAGGC-TGGATCGATTTGGTGGTAGGTGGGTTTAG
637 GCGGGCACTACGGGCACTAAGCCGACGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
14856171 GCACATCTTCATATTTCTATGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCC
702 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
14856236 TTAAGCCTTCACGTGAAGTTTCATGGCAAAACAACTCGTTTTCTATTTTTCACGATTTTTGAAAC
767 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
14856301 TTTTTACGGTTCGGGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAACT
832 TTTTTACGGTTCGGGATTTTTTAAAAT-TTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
14856357 TGGTAGACATGGTCCTTGTATTTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAAATCTAAGT
1 TGGTAGACATGATCCTTGTA-TTTTTTTTGGCATGCACAAAA-AATTCAGCTAAAAACTCTAAGT
*
14856422 GTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCA
64 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14856487 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATA
129 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT-GATAAGGGATA
* *
14856552 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCTTGGCCC
193 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGG-CC
* * * *
14856617 CCCCGATCGCCAGAATCCCAATACCGCCGGTCAGGTTCTCC-G-A-----C-GATGGTGCCCCGA
257 CCCCAATCGTC-GAAACCCAATGCCGCCGGTCAGGTTCTCCGGCATGCTCCGGATGGTGCCCCGA
* * *
14856674 CGAAGAAAAATGCGGCACCAACACATGCCCGAACCCAGCATGTGCTGCCG------CAACCC--T
321 GGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCACCCTCAACCCGAT
14856731 CGATC-----C--GG--T---C-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
386 CGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
14856781 CACACGAAACGAGCGTGCGGGTGCTCAACCAGCCAAAGGGGTAGGATGCACAAGTCGGGGATTGG
451 CCCACGAAACGAGCGTGCGGGTGCTC-ACCAGCCAAAGGGGTAGGATGCACAAGCCGGGGATCGG
* *
14856846 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTAGTCCAGT-CGATCTTAGAC
515 TCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAGTCCGATCTTAGAC
* *
14856910 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGTGGGTGGGCGGGCAC
580 TTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGGTGGGCGGGCAC
* *
14856975 TACGTCGGC-CATAGAGACGCGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
645 TACG--GGCAC-TA-AG-C-CGACGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*** * *
14857039 ACATCTTCATATTTCTGCATGCCAATCCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTT
704 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
14857104 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTT
769 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * *
14857169 TTTATGGTCCAGGATTTTTTAAACTTTTTTGGAAGGAGTTTTGGCCCCAAACT
834 TTTACGGTTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
14857222 TGGTAGACGTGATCCTTGAATTTTT
1 TGGTAGACATGATCCTTGTATTTTT
14857247 GTTCACATGC
Statistics
Matches: 1566, Mismatches: 184, Indels: 111
0.84 0.10 0.06
Matches are distributed among these distances:
859 68 0.04
860 133 0.08
861 6 0.00
862 6 0.00
863 2 0.00
864 7 0.00
865 51 0.03
866 169 0.11
867 1 0.00
869 2 0.00
871 1 0.00
876 4 0.00
877 2 0.00
879 6 0.00
885 1 0.00
886 55 0.04
889 1 0.00
894 1 0.00
896 9 0.01
897 203 0.13
898 256 0.16
899 7 0.00
900 5 0.00
901 221 0.14
902 1 0.00
903 14 0.01
904 240 0.15
905 91 0.06
906 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCTAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTGATAAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCC
AATCGTCGAAACCCAATGCCGCCGGTCAGGTTCTCCGGCATGCTCCGGATGGTGCCCCGAGGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCACCCTCAACCCGATCGATC
TTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGTGCTCACCAGCCAAAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGT
CCCCCTCTGTGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAGTCCGATCTTAGACTTGGAA
TGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGGTGGGCGGGCACTACGGG
CACTAAGCCGACGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
GATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACT
Found at i:14857340 original size:26 final size:26
Alignment explanation
Indices: 14857300--14857352 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14857290 CCGGTCCGAT
14857300 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14857326 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14857352 C
1 C
14857353 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14858951 original size:26 final size:26
Alignment explanation
Indices: 14858922--14858972 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14858912 CTGGGCCGAT
14858922 CTTAGACTGGCAATGAACTCTGTATA
1 CTTAGACTGGCAATGAACTCTGTATA
*
14858948 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGCAATGAACTCTGTAT
14858973 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCTGTATA
Found at i:14860515 original size:26 final size:26
Alignment explanation
Indices: 14860486--14860538 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14860476 CCGGTCTGAT
*
14860486 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14860512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14860538 C
1 C
14860539 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14862283 original size:26 final size:26
Alignment explanation
Indices: 14862254--14862305 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14862244 CGGTCCGATA
*
14862254 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
14862280 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
14862306 CTACGTCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14863348 original size:907 final size:894
Alignment explanation
Indices: 14861376--14864179 Score: 3595
Period size: 907 Copynumber: 3.1 Consensus size: 894
14861366 CCGGTCTGAT
* * * * **
14861376 CTTAGACTGAGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTGCAAGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
14861441 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTACGTGCTACCGATCC
66 CTGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCACTCTACGTGCTTCTGATCC
* * * * *
14861506 TGCTACCGCAACCCTCAATCTGGTCTGATCTGAGACTGGGAATGAACTCTGTATGCATGAGCCAA
130 TGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14861571 TCGATGAAATGAGCA--GGCGGGCGGG-TAGGCACTACACCAACCAGAGAGATGGGAT-CTG-CA
194 CCGATGAAACGAG-AGGGGCGGGCGGGCT-GGCACTACGCCGACCAGAGAGATGGGATGC-GACA
**
14861631 AGCTGCAGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT-GC
256 AGCTGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGGC
14861695 CATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACATGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACATGAAGTTTCATGGCAAG
** *
14861760 ACGACTCGTTTTCTAATTTTTACA-ATTTTCAAAACTTTTTACGGTTCAGGATTTTTGAAAATTT
386 ACGACTCGTTTTCT-ATTTTT-CAGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
* *
14861824 TTTCGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTATGCAC
449 TTT-GGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
*
14861888 AAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
513 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* **
14861953 TTCCAGACACTTTAATGGCTACTTACAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGCGGGT
578 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAG-GGGT
* *
14862017 GTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAGGTACCAGCACCCATCG
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* **
14862082 CACATCAAGTGCGCACACCCCCCCTCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCA
707 CACATCATGTGCGCACA---CCCC-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA
* * * *
14862147 GGTTCTCCGGTGATGCCCCGGTGATGGTGCCCTGACGAAGAAAAATATGACACCAGTACATGCCT
767 GGTTCTCC-GCGATG--CCGGTGATGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCC
*
14862212 GAGCCAAGCATGTGCTGCTGCAACCCTCGGT-TCGGTCCGATATTAGACTGGGAATGAACTCCGT
829 GAGCCAAGCATGTGCTGC-GCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGT
14862276 ATG
892 ATG
* * * * * *
14862279 CTTAGACTGGGAATGAACTCCATATGCCTACGTCGAA-ACATGAAATGAGTGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
14862343 CCAGCCAGAAGGTCGGGATGCGCAAGCCAGGGATCAGTCGGGTCCCACTCTACGTGCTGT-TGAT
65 TCTGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCACTCTACGTGCT-TCTGAT
* *
14862407 CCTGCTACCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
128 CCTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCC
* *
14862472 AACCGACGAAACGAGTAGGTGGGCGGGCGGGCTGGCACTACGCCGACCAGAAAGATGGGATGC-A
192 AACCGATGAAACGAG-A-G-GGGCGGGCGGGCTGGCACTACGCCGACCAGAGAGATGGGATGCGA
*
14862536 CAAGCTGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATTATTTCTGGCCATGCCA
254 CAAGCTGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCA-TATTTCT-G-CATGCCA
*
14862601 ATGGCCATTTTTATGGCTTTGTAAATTCATATCAATGGTCCCTTAAGCCTTCAACATG-AGTTTC
316 ATGGCCATTTTTATGGC-TTGTAAATTCATA-CAATGGTCTCTTAAGCCTTC-ACATGAAGTTTC
*
14862665 A-GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT-AGGGATTTTT
378 ATGGCAAGACGACTCGTTTTCTATTTTTCA-GATTTTTGAAACTTTTTACGGTTCA-GGATTTTT
* * * ** *
14862728 TAAAATTTTTTGGAAAGGAATTTTGGTCCCAAAAATT-GTAGATGTGATCCCTGTATTTTTGTTG
441 TAAAATTTTTTGGAAAGGAGTTTTGG-CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * *
14862792 GCATGCACAAAAAAATTCAGCAAAAAACTCGTAGTGTACGAGATTTTGTGACCATTTGAAAAAAG
505 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
14862857 TATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
570 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * *
14862922 AAGGGGTGTTAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGTGCCAAGTACCAGCA
635 AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
14862987 CCCATCACACATCATGTGCGCACACACCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
700 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
* * *
14863052 CAGGTTCTCCGACGATGCTCTGGTGATGGTACCCTGACAAAGAAAAATGCGACACCAGCACATGC
765 CAGGTTCTCCG-CGATGC-C-GGTGATGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGC
* * * * * **
14863117 CCGAGCCTAGCATGTGCTGTCGTAACCGTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTA
827 CCGAGCCAAGCATGTGCTG-CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
14863182 TATG
891 TATG
** *
14863186 CTTAGACTGGGAATGAACTCTGTTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-T
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
14863250 CCTGCTAGAGGGGCGGGATGCGCAAGCCGGGCACCGGTCGGGTCCCCCTCTGCGTGCTTCTGATC
66 -CTGCCAGAGGGGCGGGATGCGCAAGCCGGG-ATCGGTCGGGTCCCACTCTACGTGCTTCTGATC
* * * *
14863315 CTACTGCCGCAACCCTCGGTCTGGTCAGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCA
* * * * *
14863380 ACCGATGAAACGAGCGAACGGGCAGGCGGGC-GGCCACTACGTCGGCCAGAGAGACGGGATGCGA
193 ACCGATGAAACGA--G-AGGGGCGGGCGGGCTGG-CACTACGCCGACCAGAGAGATGGGATGCGA
** * * * *
14863444 -AAGCCATGGATCGATAGGGTGGTAGGTGGGCTTT-GGCACATCTACATATTTTTGCATGCGAAT
254 CAAGCTGTGGATCGATACGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * * * *
14863507 GG-TATTTTTATGGCTTGTAAGTTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATAGA
318 GGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACATGAAGTTTCATGGC
** *
14863571 AAGATAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAT
383 AAGACGACTCGTTTTCTATTTTTCA-GATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA-
14863636 TTTTTTGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
446 TTTTTTGGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* * *
14863700 ACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGGCCATTTGAAAAAAGTGTCCC
511 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
14863765 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGGAAAATCTCAAATGCTTTTTAAGGGGG
576 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
* * *
14863830 TGTGAGTTCTCGAGATTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCATCACCCAT
641 TGTGAGTTCTCGAG-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
14863895 CGCACATCATGTGCGCCCACCCGCCCGACCCCCCCGATCGTCGGAACCCTAATGCC-ACTGGTCA
705 CGCACATCATGTGCGCACACCC-CCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCA
* *
14863959 GGTTCT-C-CG--G-C---GATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAG
767 GGTTCTCCGCGATGCCGGTGATGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCCGAG
* * * * * *
14864016 CCCAGTATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGATTGGTAATGAACTCCGTATG
832 CCAAGCATGTGCTG-CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14864080 CTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACCCAAGAAACGAGCATACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* *
14864145 -TGGCCAGAGGGGCAGGATGCGCAAGCTAGGGATCG
66 CT-GCCAGAGGGGCGGGATGCGCAAGC-CGGGATCG
14864180 ATCAAGTCCC
Statistics
Matches: 1660, Mismatches: 192, Indels: 107
0.85 0.10 0.05
Matches are distributed among these distances:
893 1 0.00
894 175 0.11
895 4 0.00
898 1 0.00
900 5 0.00
901 34 0.02
902 244 0.15
903 257 0.15
904 18 0.01
905 39 0.02
906 17 0.01
907 462 0.28
908 19 0.01
909 6 0.00
910 11 0.01
911 26 0.02
912 299 0.18
913 37 0.02
914 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CTGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGGTCCCACTCTACGTGCTTCTGATCCT
GCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACC
GATGAAACGAGAGGGGCGGGCGGGCTGGCACTACGCCGACCAGAGAGATGGGATGCGACAAGCTG
TGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCAGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTGGAA
AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCGATG
CCGGTGATGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCAAGCATGTGCTG
CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14866165 original size:26 final size:26
Alignment explanation
Indices: 14866129--14866181 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14866119 CGGATCTGAT
*
14866129 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14866155 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14866181 C
1 C
14866182 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14866354 original size:893 final size:890
Alignment explanation
Indices: 14864219--14866703 Score: 3372
Period size: 893 Copynumber: 2.8 Consensus size: 890
14864209 CTGTTGTCAA
* * * * * *
14864219 AACCTCAATGCTACCGGTCAGGTTCTCTGGCGATACTCC-AGCGATGGTGCCTCGAAGAAG-AAA
1 AACCCCAATGCCACCGGTCAGGTTCTCTGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAA
* * * * *
14864282 ATACGGCACCAGTACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGATCTGGTCTGATCTT
65 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTT
* * *
14864347 AGACTGGGAACGAAC-TCTGTGTGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
130 AGACTGGGAATGAACTTC-GTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
** * * * * * * *
14864411 GAAATAAGCGTGTGGGCACTCAGCCGGCCAAAGGAGCGAGATGTGCAAGTCGGGGATCGGTTGGG
194 GAAACGAGCGTGT-GGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAGTTGCG
** * ** *
14864476 TCCCCCTCTATGTGCTACCGATCCTATTGTCGTAACCCTCAATCCGGTCTGATCTTAGACTGGGA
258 TCCCCCTCTGCGTGCT-TCGATCCT-GCGTCGTAACCCTCAATCCGATCTGATCTTAGACTGGGA
** * * *
14864541 ATGAACTCCACATGCCTAAGCCAATCGACGAAGCGAGCGGACGGGCGGGCACTACGCCATCCAGA
321 ATGAACTCCGTATGCCTAAGCCAACCGACGAAGCGAGCGGGCGGGCGGGCACTACGCCGTCCAGA
* *
14864606 GAGAC-GAATGAGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTT
386 GAGACGGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTT-TTATTT
14864670 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
450 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
14864735 AGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATAGTTTGGGA
515 AGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACAGTTTGGGA
* *
14864800 TTTTTTAAAATTTTTTGGAAGAAGTTTTGGCCCCAAACTTTC-TAGACATGATCCTTTTGTTTTT
580 TTTTTTAAATTTTTTTGGAAGAAGTTTTGGCCCCAAAC-TTCGTAGACGTGATCCTTTTGTTTTT
* * *
14864864 TTTGGCATGCACAAAAAAATTCAGCTAAAAATTCAAAGTTTACAAGATTTTGTGACCGTTTGAAA
644 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAA
* * **
14864929 ATAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTC
709 AAAATGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTC
* * *
14864994 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACC
774 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAAATAAGGGCCAAATACC
* **
14865059 AGCACCCATCACACATCATGTGTGCACACCCCTCAGCCCCCCCGATCGTCGG
839 AGCACCCATCACACATCATGTGCGCACACCCCTCAGCCCCCCCGATCCCCGG
* ** * * * *
14865111 AACCCTAATGCCGTCGGTCAGGTTCTC-CAGCGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAA
1 AACCCCAATGCCACCGGTCAGGTTCTCTGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
*
14865175 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTTTGATCTT
65 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTT
14865240 AGACTGGGAATGAACTTCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
130 AGACTGGGAATGAACTTCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
14865305 AAACGAGCGTGTGGCCGCTCAGCCAGCTAGAGGGGCGGGATGTGCAAGCTGGGGATCAGTCGTGT
195 AAACGAGCGTGTGG-CGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAGTTGCGT
* * *
14865370 CCCCCTCTGGGTGCTTCCGATCCTGCTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAA
259 CCCCCTCTGCGTGCTT-CGATCCTGC-GTCGTAACCCTCAATCCGATCTGATCTTAGACTGGGAA
* **
14865435 TGAACTTCGTATGCCTAA-CCAACCGACGAAGCGAGCGGGCTAGCGGGCACTACGCCGTCCAGAG
322 TGAACTCCGTATGCCTAAGCCAACCGACGAAGCGAGCGGGCGGGCGGGCACTACGCCGTCCAGAG
* * *
14865499 AGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTTGTATTTA
387 AGACGGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTT-TATTTC
*
14865564 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
451 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
14865629 GTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGAT
516 GTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACAGTTTGGGA-
* * * *
14865694 TTTTTTTAATTTTTTTGGAAGAATTTTTGGCCCCAAACTTCGTAGATGTGATCCTTTTGTTTTTG
580 TTTTTTAAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTTTGTTTTTT
*
14865759 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCGTTT-AAAA
645 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAA
*
14865823 AAATGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
710 AAATGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCT
* * *
14865888 TTGAGGGGGTGTGAGTTCTCGAGAG-TTGATGAAGGATAGGGGGCCAAAATAAGGGCCAAGTAGC
775 TTAAGGGGGTGTGAGTTCTCGAG-GTTTGATGAAGGATAGGGGGCCAAAATAAGGGCCAAATACC
* * * * *
14865952 AGCACCCATCGCACATCATGTGCGCATACCCC-CCGGCCCCCTGATCCCCGG
839 AGCACCCATCACACATCATGTGCGCACACCCCTCAGCCCCCCCGATCCCCGG
* *
14866003 AACCCCAATGCCACCGGTCAGGTTCTCTGATGATGCTCCGACGATAGTGCCCCGACGAAGAAAAA
1 AACCCCAATGCCACCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * *
14866068 TGTGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTC-GGATCTGATCTT
66 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGG-TCTGATCTT
*
14866132 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
130 AGACTGGGAATGAACTTCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
14866197 AAACGAGCGTGCTAGCGTTCAGCTGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAGTTGCAT
195 AAACGAGCGTG-TGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAGTTGCGT
* * * ** *
14866262 CCCACTCTGCGTGCTGTCGATCCTGCGACCGTAACCTTTGATCCGATCTGATCTTAGTCTGGGAA
259 CCCCCTCTGCGTGCT-TCGATCCTGCG-TCGTAACCCTCAATCCGATCTGATCTTAGACTGGGAA
* * * * *
14866327 TGAACTCCGTATGCCTAAGCTAACCGACGGAACGAGTAGGTGGGCGGGCGGGCTGGCACTAAGCT
322 TGAACTCCGTATGCCTAAGCCAACCGAC-GAA-GCG-A-----GCGGGCGGGCGGGCACTACGCC
* * * * *
14866392 GACTAGAGAGATGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTT
379 GTCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTT
* * * *
14866457 CATACTTCTACGTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
444 -TTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
14866522 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTTTACGATTTTTAAAACTTTTTCCA
508 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTA-TTTTTCACGATTTTTGAAACTTTTTACA
* * * * * * *
14866587 GTTCGAGACTTTTTACAATTTTTTTAGAAGGAGTTTTGGCCCCAAACCTAGTAGACGTGATCCTT
572 GTTTGGGATTTTTTA-AATTTTTTTGGAAGAAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTT
*** * *
14866652 GCATTTTTTTTGGCTTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
636 TTGTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
14866704 CCGTATGCCC
Statistics
Matches: 1398, Mismatches: 166, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
891 3 0.00
892 403 0.29
893 580 0.41
894 117 0.08
895 2 0.00
896 1 0.00
901 174 0.12
902 118 0.08
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (890 bp):
AACCCCAATGCCACCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTA
GACTGGGAATGAACTTCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGTGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAGTTGCGTCC
CCCTCTGCGTGCTTCGATCCTGCGTCGTAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAGCGAGCGGGCGGGCGGGCACTACGCCGTCCAGAGAGAC
GGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTTTATTTCTACAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACAGTTTGGGATTTTTT
AAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTTTGTTTTTTTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAATGT
CCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAAATAAGGGCCAAATACCAGCACCC
ATCACACATCATGTGCGCACACCCCTCAGCCCCCCCGATCCCCGG
Found at i:14867590 original size:26 final size:26
Alignment explanation
Indices: 14867552--14867604 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14867542 CTGGTTCAAT
*
14867552 CTTACACTGGGAATCAACTCCATATG
1 CTTACACTAGGAATCAACTCCATATG
* * *
14867578 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATCAACTCCATATG
14867604 C
1 C
14867605 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATCAACTCCATATG
Found at i:14868487 original size:26 final size:26
Alignment explanation
Indices: 14868450--14868505 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14868440 CGGGTCTAAT
*
14868450 CTTAGACAGGCAATGAACTCCGTATG
1 CTTAGACAGGCAATGAACTCCATATG
* * *
14868476 CTTAGACTGGCAATGACCTCTATATG
1 CTTAGACAGGCAATGAACTCCATATG
14868502 CTTA
1 CTTA
14868506 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACAGGCAATGAACTCCATATG
Found at i:14868852 original size:898 final size:883
Alignment explanation
Indices: 14866704--14870062 Score: 4396
Period size: 898 Copynumber: 3.8 Consensus size: 883
14866694 GAAGTGTACA
** * * * * *
14866704 CCGTATGCCCAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGGTG
1 CCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATG
* * *
14866769 CACAAG-CTGGGGATCATCGGGTCCCCCTATGCGTGCTGCCGATCCTACTGCCGTAACCCTCGGT
66 CGCAAGTC-GGGGATCATCGGGTCCCCCTATGCGTGCTG-CGATCCTACTACCGCAACCCTCGGT
** * * *
14866833 CTGGTCTGATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCG
129 CTGGTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCG
* *
14866898 GGCGGGCACTACGCCGGCTAGAGAGACTGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGG
194 GGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
14866963 GTTTAGGCACATCTTTATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAATTTCATACCAT
258 GTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAAT
* * *
14867028 GGTCCCTTAAGGCTTTACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
323 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
14867093 TGAAACTTTTTACGATTCCAGATTTTTTTAAATTTTTTCGGAAGGAGTTTCATCCTCAAACTTGG
388 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCATCCTCAAACTTGG
*
14867158 TAGACGTGATCCCTGTATTTTTGTTGGCATGCAAAAAAACATTCAGCTAAAAACTCGAAGTGTAC
453 TAGACGTGATCCCTGTATTTTTATTGGCATGC-AAAAAACATTCAGCTAAAAACTCGAAGTGTAC
* *
14867223 AAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAAGGGCTACTGGCAGCAA
517 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14867288 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
582 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
14867353 GCCAATATAAGGGCTAAGCACCAGCA-CCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCC
647 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCC
* * * *
14867417 CGATCGTC-GAAACCCCAATGCCGCCGATCAGGTCTCCGATGATGCTCCGACGATGGTGCCCCGA
711 CGATCGTCAG-AACACCAATGCC-CCGGTCAGGTCTCCG-TGATGCTCTG-TGATGGTGCCCC-A
* * * *
14867481 TGAAGAAAAATGTGGCACTAGCACATGCCTGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCTGG
771 AGAAGAAAAATG-GGCACCAGCACATGCC-GAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGG
* * *
14867546 T-TCAATCTTACACTGGGAATCAACTCCATATGCTTAGACTAGGAATGAACT
834 TCT-AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACT
* * * * * * *
14867597 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGGTCAGTCGGCCAGAGGGGCGGCAAG
1 CCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATG
*
14867662 CGCAAGTCGGGGATCATCGGGTCCCCCTATGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTC
66 CGCAAGTCGGGGATCATCGGGTCCCCCTATGCGTGCTGC-GATCCTACTACCGCAACCCTCGGTC
** *
14867727 TGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGG
130 TGGTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----ACGG
* * * * *
14867792 GCGGGCGGGCACTTCACCGGCCAGAGAGACTTGATGTGCAAGCGGTGGATCGATAGGGTGGTAGG
191 GCGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *** ** **
14867857 T-GG----GGCACATCTTTATATTTCTATGTGCCAATAAAATTTTTATGGCTTGTAAATTTGTAC
255 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
* *
14867917 CATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
320 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
14867982 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCATCCTCAAACT
385 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCATCCTCAAACT
14868047 TGGTAGACGTGATCCCTGTATTTTTATTGGCATGCACAAAAACATTCAGCT-AAAACTCGAAGTG
450 TGGTAGACGTGATCCCTGTATTTTTATTGGCATGCA-AAAAACATTCAGCTAAAAACTCGAAGTG
*
14868111 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAG
514 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
** *
14868176 CAAACCTATAAAATCTCAAATGCTCTTTAACCGGGTGTGAGTTCTCGAA-GATTGATGAGGGATA
579 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AAGGTTTGATGAGGGATA
* **
14868240 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCGCCCCCCC
643 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGC
*
14868305 CGACCCTTCCGATCATCAGAACACCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTGGTGATG
706 C--CCC--CCGATCGTCAGAACACCAATGCC-CCGGTCAGG-TCTCC-GTGATGCTCT-GTGATG
*
14868370 GTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAATCC
763 GTGCCCCAA-GAAGAAAAATG-GGCACCAGCACATGC-CGAGCCCAGCATGTGCTGTCGTAACCC
* * * *
14868435 TCGGTCGGGTCTAATCTTAGACAGGCAATGAACTCCGTATGCTTAGACTGGCAATGACCT
825 TCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG-AATGAACT
** * * * * * *
14868495 CTATATGCTTAAGTCAACCCACGAAA-AAACGTGCGCGCATTCAGCCTGCCAGAGCGGC-GGATG
1 CCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATG
* ** * * * * *
14868558 CGCAAGTCTGGGATGGGTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTATCGCAACCCTCAGT
66 CGCAAGTCGGGGAT-CATCGGGTCCCCCTATGCGTGCTG-CGATCCTACTACCGCAACCCTCGGT
* *
14868623 -TCGGTCCAATCTTAGACTGGGAATGCACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGC
129 CT-GGTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGC
** *
14868687 GGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCTTAAGCCGTGGATCGATAAGGTGGTAGGTG
193 GGGCGGGCACTACGCCGGCCAGAGAGACG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
14868752 GGTTTAGGCACATCGTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAA
257 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAA
* *
14868817 TGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
322 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *** *
14868882 TTGAAACTTTTTACGGTTC-AGGATATTTTAAAATTTTTTCGAAAGGAGTTTTGGCCGCAAACTT
387 TTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTCATCCTCAAACTT
* *
14868946 GGTAGACATGATCCCTGTATTTTTATTGGCATGCAAAAAACATTTAGCTAAAAACTCGAAGTGTA
451 GGTAGACGTGATCCCTGTATTTTTATTGGCATGCAAAAAACATTCAGCTAAAAACTCGAAGTGTA
14869011 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
516 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
14869076 AACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
581 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * * *
14869141 GGCCAATATAAGGGCCAAGTATCGGCACCAATCGCACATCATGTGCACACACCCCCCGGCCCCCC
646 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * *
14869206 CGATCGCCAGAACGCCAATG--CC-GTC-GG--T-C---AAGTTCT-T--TGGTG----AAGAA-
711 CGATCGTCAGAACACCAATGCCCCGGTCAGGTCTCCGTGATGCTCTGTGATGGTGCCCCAAGAAG
* **
14869253 AAAAAT-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CTGCAACCCTCGGTCCGGTCCGA
776 AAAAATGGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGTC-GTAACCCTCGGTCCGGTCTAA
* *
14869316 TCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTGGGAATGATCT
839 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACT
* * * *
14869362 CCGTATGCCAAAAGTCAACCCACGAAATGAACGTGGGGGTGCTT-AGTCGGCCAGAGGGGCGGGA
1 CCGTATG-CATAAGTCAACCCACGAAATGAACGTGCGGGCG-TTCAGCCGGCCAGAGGGGCGGGA
** * * * ** *
14869426 TGCTTAAGCCGGGGATCGGTCGGGTCCCCCTCTTTGTGCTGGCGATCCTACTACCGCAACCCTCA
64 TGCGCAAGTCGGGGATC-ATCGGGTCCCCCTATGCGTGCT-GCGATCCTACTACCGCAACCCTCG
* * *
14869491 GTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG-A----
127 GTCTGGTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGG
* * * * *
14869551 ---TCGGGCATTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGT
192 CGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * * * **
14869613 AGGTTTTGGCACATCTTCATATTTATGCATGCCAATGCCTTTTTTATGGCTTGTAAATACACCCA
256 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACA
* * *
14869678 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTGACGATT
321 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * **
14869743 TTTGAAACTTTTTACGGTTCGGGATTTTTTGAAATTTTTTTGGAAGGAGTTTTTGTCC-CAAACT
386 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTCATCCTCAAACT
* * * *
14869807 TGGTAGACGTGATCCTTGTACTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
450 TGGTAGACGTGATCCCTGTATTTTTATTGGCATGCA-AAAAACATTCAGCTAAAAACTCGAAGTG
14869872 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
514 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14869937 CAAACCTCTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
579 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
14870002 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCG
644 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
14870063 ACGGGGATCG
Statistics
Matches: 2202, Mismatches: 214, Indels: 129
0.87 0.08 0.05
Matches are distributed among these distances:
862 249 0.11
863 210 0.10
864 7 0.00
866 1 0.00
867 92 0.04
868 20 0.01
869 28 0.01
870 115 0.05
871 3 0.00
875 5 0.00
877 1 0.00
879 5 0.00
883 1 0.00
884 1 0.00
887 2 0.00
888 3 0.00
889 2 0.00
891 163 0.07
892 266 0.12
893 234 0.11
894 6 0.00
895 3 0.00
896 25 0.01
897 228 0.10
898 528 0.24
899 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
CCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGTCGGGGATCATCGGGTCCCCCTATGCGTGCTGCGATCCTACTACCGCAACCCTCGGTCT
GGTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCATCCTCAAACTTGGTAG
ACGTGATCCCTGTATTTTTATTGGCATGCAAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCAGAACACCAATGCCCCGGTCAGGTCTCCGTGATGCTCTGTGATGGTGCCCCAAGAAGAAAAA
TGGGCACCAGCACATGCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTAATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACT
Found at i:14870894 original size:26 final size:26
Alignment explanation
Indices: 14870858--14870910 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14870848 CTGATCTAAT
14870858 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14870884 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14870910 C
1 C
14870911 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14871809 original size:26 final size:26
Alignment explanation
Indices: 14871760--14871810 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14871750 CGATCCGATC
*
14871760 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTACGTATGG
*
14871786 TTAGACTGGGAATGAACTATGTATG
1 TTAGACTGGGAATGAACTACGTATG
14871811 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGG
Found at i:14872117 original size:901 final size:899
Alignment explanation
Indices: 14870064--14872905 Score: 4045
Period size: 901 Copynumber: 3.1 Consensus size: 899
14870054 AGCCCCCCGA
* * * * *
14870064 CGGGGATCGATCGGGTTTCCCTCTACGTGCTGCTGATCCTGCTACTGCAACCCTCGGTCTAGTCC
1 CGGGGATCGACCGGGTTCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGATCCAGTCC
* * * *
14870129 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGACGGGTGGGC
66 GATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGC
* * * * *
14870194 GGGCGGGCACTACGTCGGTCAGAGAAAAGAGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTG
131 GGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTA---G
*
14870259 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAATT
193 GTA----GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
*
14870324 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATATTTC
254 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
14870389 ACGA-TTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTCTTTCGAAAGGAGTTTTGGCCA
319 ACGATTTTTGAAAACTTTTCA-G-TTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCA
* *
14870453 CAAACTTGGAAGACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTC
382 CAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTC
14870518 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTAC
446 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTAC
* * *** *
14870583 AGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGAGTTGTCAAGGTTTGATGAGG
511 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGAGTTCAGAAGGTTTAATGAGG
* *
14870648 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCT-CACGTCATGTGCGCACACCCCCC
576 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-TGCACATCATGT--GCACACACCCC
* * * * * * ** *
14870712 CCGGCCCCCCCGATTGCCAGAACCCTAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCAGTGAT
638 CCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCTGGCGAT
** * * * **
14870777 GGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATGTGCTGTCCCAACC
703 GGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACC
* ** * ***
14870842 CTTGGTCTGATCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCAT
768 CTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGGTTAGACTGGGAATGAACTATGT
* * * * *
14870907 ATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGC-ACTCAACCGACCAGAGGGCCGAGATGCGC
833 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGA-TCAGCCGACCAGAGGGGCGAGATGCGT
14870971 AAG
897 AAG
* * * * * * * ***
14870974 CTGGGAATTGGCCGGG-TCCCCTTCTGCGTGCTACCGATTCTGCTACCGCAACCCTCGATTTGGT
1 C-GGGGATCGACCGGGTTCCCC-TCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGATCCAGT
* * * * * **
14871038 CTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGG
64 CCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGG
* * * * **
14871103 GCGGGCGGGCACTGCGCCGGCTAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAGG
129 GCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGG
* * *
14871168 TGGGTTTAGGCACATCCTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGC
194 TAGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
14871233 AATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
259 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * *
14871298 TTTTGAAAACTTTTGCAGTTCCTGATTTTTTAAAATTTTTTC-AGGACGATTTTTGGGCC-CAAA
324 TTTTGAAAACTTTT-CAGTTCAAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTT-GGCCACAAA
* * * *
14871361 CTTGGTAGACATGATCCTTCTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAG
386 CTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAG
*
14871426 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
450 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGC
*
14871491 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCAGAAGGTTTAATGAGGGATA
515 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGAGTTCAGAAGGTTTAATGAGGGATA
14871556 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCC-GCCC
580 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCAGCCC
* * *
14871620 CCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTTTCCAGTGATGCTCTGGCGATGGTGCCC
645 CCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCC
*
14871685 CGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTTGGTC
710 CGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTTGGTC
*
14871750 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTATGTATGCCTA
775 CGATCCGATCTTAGACTGGGAATGAACTCCATATGGTTAGACTGGGAATGAACTATGTATGCCTA
* *
14871815 AGTCAACCCACGAAACGAGCGTGCGGGCGATCAGCCGACCAAAGGGGCGGGATGCGTAAG
840 AGTCAACCCACGAAACGAGCGTGCGGGCGATCAGCCGACCAGAGGGGCGAGATGCGTAAG
* * * *
14871875 TCGGGGATCGACCGGGTTCACCTCTACGTGC-GACTGATCCTACAACCACAACCCTC-AGTCCAG
1 -CGGGGATCGACCGGGTTCCCCTCTACGTGCTG-CTGATCCTGCTACCGCAACCCTCGA-TCCAG
* *
14871938 TCCGATCTTAGACTGGGAATGAATTACGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
63 TCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCG
14872003 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAG
128 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAG
* * *
14872068 GTAGGTTTAGGCAGATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
193 GTAGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14872133 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
258 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
14872198 TTTTTG-AAACTTTTTACGGTTCAAGATTTTTTAAAATGTTTTCGAAAGGGGTTTTGGCCACAAA
323 TTTTTGAAAAC-TTTT-CAGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCACAAA
* *
14872262 CTTGGTAGACGTCATCCTTGTGTTTTTGTTGGCACGCACAAAATAATTCAGCTAAAAACTCGAAG
386 CTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAG
* *
14872327 TGTACAAGATTTTTTGACCATTTGAAAAAAGTGACCCCACTTCAGACACTTTAATGGCTACTGGC
450 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGC
* * * *
14872392 AGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGGGTGAGTTCTCG-AGGTTTAATGAGGAA
515 AGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGGTGAGTTC-AGAAGGTTTAATGAGGGA
*
14872456 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCAGC
578 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCAGC
* * *
14872521 CCCCCTGATCGTCGGAACCTCAATGCCGCCAATCAGGTTCTCCGGTGATGCTCTGGCGATGGTGC
643 CCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGC
* * *
14872586 CCCGGTGAAGAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGTAACCCTCGG
708 CCCGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTTGG
*
14872651 TCCGATCCGATCTTAGACTGGGAATGAACTCCATATGGTT-GACTGGGAAAGAACTATGTATGCC
773 TCCGATCCGATCTTAGACTGGGAATGAACTCCATATGGTTAGACTGGGAATGAACTATGTATGCC
* * ** *
14872715 TAAGTCAACCCACAAAACGAGCATGCGGGCGATCAGTATG-CCAGAGGGGCGAGATGCATAAG
838 TAAGTCAACCCACGAAACGAGCGTGCGGGCGATCAG-CCGACCAGAGGGGCGAGATGCGTAAG
* * *
14872777 CCGGGGATCGGCCGAGTTCCCCTCTACGTACTGCTGATCCTGCTACCGCAACCCTCGATCCAGTC
1 -CGGGGATCGACCGGGTTCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGATCCAGTC
*
14872842 CGATCTTAGACTTGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGG
65 CGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGG
14872906 ACGGAAGGAG
Statistics
Matches: 1722, Mismatches: 188, Indels: 52
0.88 0.10 0.03
Matches are distributed among these distances:
900 9 0.01
901 691 0.40
902 298 0.17
903 167 0.10
904 378 0.22
905 18 0.01
906 1 0.00
908 3 0.00
910 5 0.00
911 152 0.09
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CGGGGATCGACCGGGTTCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGATCCAGTCC
GATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTA
GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAAACTTTTCAGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCACAAACTTGG
TAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGAGTTCAGAAGGTTTAATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCAGCCCCCCCGA
TCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGGTGA
AGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCCGATCC
GATCTTAGACTGGGAATGAACTCCATATGGTTAGACTGGGAATGAACTATGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGATCAGCCGACCAGAGGGGCGAGATGCGTAAG
Found at i:14874928 original size:26 final size:26
Alignment explanation
Indices: 14874889--14874941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14874879 CCGGTCCGAT
*
14874889 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14874915 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-GAATGAACTCCGTATG
14874941 C
1 C
14874942 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14875811 original size:26 final size:26
Alignment explanation
Indices: 14875775--14875827 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14875765 CTGGTCCGAT
14875775 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
14875801 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14875827 C
1 C
14875828 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14879952 original size:893 final size:893
Alignment explanation
Indices: 14878627--14883098 Score: 5828
Period size: 899 Copynumber: 5.0 Consensus size: 893
14878617 CCGATCCAAT
* * * * *
14878627 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGTGCGAGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
14878692 CGGCCAGA-GGGACGGGATACACAAGCCGGGGATCGGCTGGGTCCCCCTCTGTGTGCTGCCAATC
66 CGGCCAGAGGGGA-GGGATACACAAGCCGGGGATCGTC-GGGTCCCCATTTGTGTGCTGCCGATC
* *
14878756 CTACT-ATCGCAA-CCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CTGCTGATCGCAACCCTT-GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
14878819 CAATCGATGAAACGAGCGGGTGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAAATGGGATGCG
193 CAACCGACGAAACGA--------GCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCG
* * * ** ** *
14878884 CAAGTCATGGATCGATAGGGTTGCCGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAGTG
250 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
14878949 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAA
315 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
14879014 GACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTCTTTT-AAATT
380 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATT-TTTTAAAATT
* * *
14879078 TTTTCGGAAGGATTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGAAC
444 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
14879143 AAAAAAATTTAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCA
509 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
14879208 TGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * **
14879273 TCAGCTCTCGAGGTTTGATGAGGGATAAGGGCCAATATAAGGGCTGAGTACCAGCACCCATCACA
639 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
* *
14879338 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTC
704 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * ** * *
14879402 TCCGGCGATGCTCCCACAATGGTGCCCCGGTGAAGAAAAATACGGCACCTGCACATGCCCGAGCC
769 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * *
14879467 CAGCATGTGCTGCTTAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCTGTATG
834 CAGCATGTGCTGCGCAACCCTCGGTCTGGTC-AATCTTAGACTGGGAATGAACTCCGTATG
* * *
14879528 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCATGAAGCGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
14879593 CGGCCAGAGAGGAGGGATGCACAAGCCGGGGATCGATCGGGTCCCCATTTGTGTGCTGTCAATCC
66 CGGCCAGAGGGGAGGGATACACAAGCCGGGGATCG-TCGGGTCCCCATTTGTGTGCTGCCGATCC
* * *
14879658 TGCTGCT-GCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 TGCTGATCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14879722 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGAAAGCCGTGC
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
14879787 ATCGATAGGGTGGTAGGTTGGTTTAGGCACATGTTCATATTTTTGCATGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
14879852 GGCTTGTAAATACATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCGTGGCAAGACGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** ** * * *
14879917 TTTCTATTTTTCAAAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAGTTTTTCGGAAGG
390 TTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
14879982 AGTTTTGGCCCCAAACTTGGTAGATGGGATCCGTGTATTTTTTTTGGCATGCACAAAAAAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
*
14880047 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
14880112 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGATGTGGGTTCTTGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* **
14880177 GGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCTGAGTACCAGCACCCATCACACATCATGTGC
650 GGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * * **
14880242 GCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCAGTCAGGTTCTACGATGATG
714 GCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * * * * * * **
14880307 CTCAGGCGATGGTGTCTCGGCAAAG-AAAATGCGACTCCAGCACATGCCTTAGCCCAGCATGTGC
779 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
14880371 TACCGCAA-CC-C--TC-GG------TT---C--GG--T----T-TG-AT-
844 T-GCGCAACCCTCGGTCTGGTCAATCTTAGACTGGGAATGAACTCCGTATG
* * **
14880397 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGTGGGCATTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
14880462 CGGCCAGAGGGGTGGGATGCACAAGCCAGGGATCGATCGGGTCCCCATTTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGAGGGATACACAAGCCGGGGATCG-TCGGGTCCCCATTTGTGTGCTGCCGATCC
* **
14880527 TGCT-ATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGATCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14880591 ACCGATGAAACAAGCGGGCAGGCGGGCGGGCGGGCACTACACCGGCCAGTGAGACGGGATGCGGA
195 ACCGACG--A-AA-C--G-A-GCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCA
* * *
14880656 AGGCGTGGATCGATAGGGTGGTAGGTGTGTTTCA-GCACATCTTCATATTTATGCATGCCAATGC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCATGCCAATGC
* *
14880720 CATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAG
316 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
14880785 ATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTT
381 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
14880850 TTCGAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-A
446 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * *
14880914 AAAATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATT
511 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14880979 TCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTG
576 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14881044 AGTTCTTGAGGTTTGATAAGGGATAGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCACACA
641 AGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * *
14881109 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCTGAACCCCAATGCCGTCGGTCAGGTTCTC
706 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * * *
14881174 CGATGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGTCGGAGCCTA
771 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
14881239 GCATGTGCTACCACAATCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAATTCCGTATG
836 GCATGTGCT-GCGCAACCCTCGGTCTGGT-CAATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
14881299 CCTAGACTGGGAATGAACTCTGTATGCCTACGTCAACCCACGAAATGAGCGTGCAAGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *** *
14881364 CGGCCAGAGGGGTA-GGATACGCAAGCCGAGGATCTGTTGGGT-CCCACTTTACATGCTACCGAT
66 CGGCCAGAGGGG-AGGGATACACAAGCCGGGGATC-GTCGGGTCCCCA-TTTGTGTGCTGCCGAT
* * * ** * * * *
14881427 CCTACTG-CCGCAACCCTTGATCTTGTCCGATCTTAGACTGGTAATGAATTTCGTATGCCTAAGC
128 CCTGCTGATCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * **
14881491 TAACCGACGAAACGAGCGGACGGGCGAGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
193 CAACCGACGAAACGAGCGGGCGGGC----GGGCACTACACCGGCCAGAGAGACGGGATGCGCAAG
*
14881556 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCAT
254 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
14881621 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCAAGGCAAGACG
319 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
14881686 ACTCGTTTTTTTTTTTTCACAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAAGTTTTTT
384 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTT
* * * *
14881751 -GGAAGCAGGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCACAAAA
448 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
14881815 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
513 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
14881880 AAACACTTTAACGGCTACTGGCAGCAAACTTGTAAAATCTAAAATGCTCTTTAA-GGGGTGTGAG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14881944 TTCTCAAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
643 TTCTCGAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * *
14882009 CATGTGCGCACACCCTCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTCC
707 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** * *
14882074 GGCAATGCTTCGACGATGGTGCCATGACGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCCAG
772 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
14882139 CATGAT-CTGTCGTAACCCTCGGTCTGGTACGATCTTAGACTGGGAATGAACTCCGTATG
837 CATG-TGCTG-CGCAACCCTCGGTCTGGT-CAATCTTAGACTGGGAATGAACTCCGTATG
* * *
14882198 CTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * ** * * * * *
14882263 CGGCCAAAGGGGCGGGATCCACAAGCCAAGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCT
66 CGGCCAGAGGGGAGGGATACACAAGCCGGGGATC-GTCGGGTCCCCATTTGTGTGCTGCCGATCC
* *** ** ** * *
14882328 TGCTG-TCGTAACCCTCACTCCAATCCAATCTTAAACTGGGAATGAACTCCGTTTGCCTAAGCCA
130 TGCTGATCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** *
14882392 ACTGAAAAAATGAGCGGGCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGC--G-G-GCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCC
*
14882457 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
14882522 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGATGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
14882587 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTTAAATTTTTTCGG
386 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
14882652 AAGGAGTTTTGGCCCCAAACTTGATAGACATGATCCTTTTATTTTTTTTTGGCAAGCACCAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAA
* *
14882717 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTTAG
515 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
14882782 ACACTTTAATGGCTAC-CGCTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
580 ACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
14882846 TCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCA
644 TCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* * * *
14882911 TGTGCGCACATCCCCCCCGG-CCCCCCGATCGTTGGAGCCCCAATACCGCCGGTCAGGTTCTCTG
709 TGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
14882975 GAGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGC
773 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
14883040 ATGTGCTGATGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
838 ATGTGCTG-CGCAACCCTCGGTCTGGTC-AATCTTAGACTGGGAATGAACTCCGTATG
14883098 C
1 C
14883099 CGAAGCCAAC
Statistics
Matches: 3138, Mismatches: 361, Indels: 145
0.86 0.10 0.04
Matches are distributed among these distances:
868 1 0.00
869 180 0.06
870 2 0.00
871 3 0.00
872 3 0.00
873 1 0.00
875 122 0.04
876 188 0.06
877 271 0.09
878 4 0.00
880 3 0.00
881 2 0.00
883 2 0.00
888 2 0.00
890 2 0.00
891 3 0.00
892 4 0.00
893 411 0.13
894 96 0.03
895 76 0.02
896 1 0.00
897 1 0.00
898 298 0.09
899 738 0.24
900 325 0.10
901 225 0.07
902 168 0.05
903 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGAGGGATACACAAGCCGGGGATCGTCGGGTCCCCATTTGTGTGCTGCCGATCCT
GCTGATCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CGCAACCCTCGGTCTGGTCAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14881311 original size:26 final size:26
Alignment explanation
Indices: 14881275--14881328 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14881265 GGTCCAATCT
*
14881275 TAGACTGGGAATGAATTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
14881301 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14881327 TA
1 TA
14881329 CGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:14882208 original size:26 final size:26
Alignment explanation
Indices: 14882172--14882224 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14882162 CTGGTACGAT
14882172 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14882198 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14882224 C
1 C
14882225 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14886024 original size:872 final size:878
Alignment explanation
Indices: 14883050--14886766 Score: 4595
Period size: 872 Copynumber: 4.2 Consensus size: 878
14883040 ATGTGCTGAT
* * ** *
14883050 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAACCGATGA
1 GCAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
** * * * *
14883115 AATAAGCGGGCAAGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATAAGCAAGCCGTCG
66 AACGAGC-GG---GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGG
*
14883180 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TCACATGCCAATGCCATTTTTA
127 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTA
* * * * *
14883244 TGGGTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGATGACTCG
191 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCA
* *
14883309 TTTTCTATTTTTCACGATTTTTGAAACTCTTTGCGGTTCGAGATTTTTTAAAATTTTTCGAAAGG
256 TTTTCTATTTTTCACAATTTTTGAAACTCTTTACGGTTCGAGATTTTTTAAAATTTTTCGAAAGG
* *
14883374 ACTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAATT
321 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATT
*
14883439 TAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
384 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
14883504 CTTTAGTGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTC
449 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGGGTGAGTTCTC
* * *
14883569 GAGGTTTGATGAAGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
513 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
14883634 GCGCACACCCCCCCGACCCCCCCGATCGCCGGAGCCGCAATGCAGCCGGTCAGGTTCTCTGGCGA
578 GCGCACACCCCCCCGACCCCCCCGATCGCCGGAACC-CAATGCCGCCGGTCAGGTTCTCCGGTGA
* * * * *
14883699 TGCTCCGACGATGTTGCCCCAATGAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGGATGT
642 TGCTCCGACGATGGTGCCCCAGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGTATGT
* * *
14883764 GCTACCGTAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGG
707 GCTACCGCAA-CC-C-GT-CA----G-TC-T--A---GG-AT--ACT-AGCATGCTTAGACTGGG
* * ** * *
14883829 AATGAACTTCATTTTTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGAG
753 AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGG
* * * *
14883894 GCAGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCTTGCTACC
818 GCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * ** * *
14883955 GCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
1 GCAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * ** *
14884020 AACGA----GCAGACGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCG
66 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCG
* * * * ** *
14884081 ATAGGGTGGTAGGTTGGTTTAGGCACGTCTTCATTTTTTTGTGTGCCAACGCCATTTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * *
14884146 TGTAAATTCATACAATGGTCCCTTAAGCCTTGACATGAA-TTTTATGGCAAGACA-ACTCATTTT
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-AGACTCATTTT
* *
14884209 CTATTTTTCATAATTTTTGAAACTCTTTACGGTTCGAGATTTTTTACAATTTTTCGAAAGGAGTT
260 CTATTTTTCACAATTTTTGAAACTCTTTACGGTTCGAGATTTTTTAAAATTTTTCGAAAGGAGTT
*
14884274 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
14884339 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
14884404 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGGTGAGTTCTCGAGGTT
* *
14884469 TGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCAC
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
14884534 ACCCACCCGACCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAAGTTCTCC---G--G-T--
584 ACCCCCCCGACCCCCCCGATCGCCGGAACCC-AATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
** * * *
14884591 ---GATGGTGCCCCGAG-GAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGTATGTGCTGC
648 GACGATGGTGCCCC-AGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGTATGTGCTAC
* * * * *
14884652 CACAACCC-TCTGTC-CGG-T-CT-G-AT-CTTAGACTGGGAATGAACACCATATCCCTAAGTCA
712 CGCAACCCGTCAGTCTAGGATACTAGCATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* ** * * * *
14884710 ACCCACGGAACGAGCGTATGGGTGCTCAGCCGGCTAGA-GGGCAGGGATGCGTAAGCCGGGGATC
777 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCA-GGATGCGCAAGCCGGGGATC
* * * *
14884774 GGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTACTATC
841 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * ** * *
14884812 GCAACCCT-TGATCCATCCAATCTTTTACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATGA
1 GCAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * *
14884876 AACGAGCGGGCGGGCGAGCGTGCGGGCACTACGCCGGCCAAAGAGATGGGAT-CGCAAGCCATTG
66 AACGAGCGGGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGG
* * *
14884940 ATCGATAGGGTGATAGGTGGCTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
127 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
14885005 GGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
192 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCAT
** * * *
14885070 TTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAG
257 TTTCTATTTTTCACAATTTTTGAAACTCTTTACGGTTCGA-GATTTTTTAAAA-TTTTTCGAAAG
* * * *
14885134 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAACTTC
320 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
14885199 AGCTAAAACCTCGAAGTGTACAATATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACAC
385 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
14885264 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTCAAGGGGGGTGAGTTCTCGA
450 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGAGTTCTCGA
14885329 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
14885394 GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCGATGCCCCCGGTCAGGTTCCCCGGTGATGC
580 GCACACCCCCCCGACCCCCCCGATCGCCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
*
14885459 TCCGACGATGGTGCCCCAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGTATGTGCT
645 TCCGACGATGGTGCCCCAGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGTATGTGCT
* * *
14885524 ACTGCAACCC-TCAGTCT-GG-T-CT-G-AT-CTTAGACTGGGAATGAACTCCGTATGACTAAGT
710 ACCGCAACCCGTCAGTCTAGGATACTAGCATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
* * * * *
14885582 CAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGAACAGAGGGGCGGGATGCGCAAGCCGAGGAT
775 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* *
14885647 CGGTCGGGTCCCCCTCTGCGTGCGGCCGATCCTGCTACC
840 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * * * * *
14885686 GCAACCCTTGGTTCAATCCAATCTTAGACTGGAAATGAACTCTGTATGCCTATGCCAACCGACGG
1 GCAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * *
14885751 AACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCCAA-CCGTGGATC
66 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACG-CAAGCCGTGGATC
* * **
14885815 GATAGGGTGGTGGGTGGGTTTAGGCGCATCTTCATATTTCTGTTTGCCAATGCCATTTTTATGGC
130 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
14885880 TTGTAAATTCATAGAATGGTCCCTTAAGCCTTCATGTGAAGCTTCATGGCAAGAAGACTCATTTT
195 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCATTTT
* ** *
14885945 CTATTATTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTC-AGAAGGA
260 CTATTTTTCACAATTTTTGAAACTCTTTACGGTTCGA-GATTTTTTAAAA-TTTTTCGA-AAGGA
* * * * *
14886008 GTTTTAGCCCCAAACTTGGTGGACGTGATCCTTCTATTTTTGTTGGCTTGCACAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
14886073 CTAAAAACTTGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACAATT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
14886138 TAATGGCTAGTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GTGAGTTCTCGAG
14886203 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
516 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * *
14886268 CACACCCCCCCG-GCACCTCGATCACCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGC
581 CACACCCCCCCGACCCCCCCGATCGCCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC
* * * * *
14886332 TCCGGCGATGGTGCCCC-GATGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAACATGTGC
645 TCCGACGATGGTGCCCCAG-TGAAGAAAAATACGGCACCAGCACATGCCCGAG-CCAA-GTATG-
* *
14886396 TGCCGTAACCTTCGGTCCACTCCGATCTTAGACTAGGAATGAACTAAGCATGCTTAGACTGGGAA
706 TG-C-T-A-C--C-G-CAAC-CCG-TC--AGTCTAGG-AT--ACT-AGCATGCTTAGACTGGGAA
* * * * * *
14886461 TGAACTCCGTCTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACTGGCCAGAGGGGC
755 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGC
* * * * * * *
14886526 AGGATGTGCCAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCT
820 AGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* *
14886585 GCAACCCTCGG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGATG
1 GCAACCCTCGGTTC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
* * * * *
14886649 AAACAAGAGGGCGGGCGAGCGGGCACTACGCCAGTCAGAGAGACGGGATACGCAAGCCGTGGATC
65 AAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATC
* * *
14886714 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGC
130 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
14886767 TCCTTGTATT
Statistics
Matches: 2456, Mismatches: 289, Indels: 140
0.85 0.10 0.05
Matches are distributed among these distances:
856 53 0.02
857 118 0.05
858 2 0.00
859 1 0.00
860 4 0.00
861 2 0.00
862 1 0.00
863 124 0.05
864 201 0.08
865 179 0.07
866 3 0.00
868 1 0.00
869 1 0.00
871 28 0.01
872 362 0.15
873 171 0.07
874 195 0.08
875 67 0.03
876 2 0.00
877 1 0.00
878 2 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 55 0.02
884 4 0.00
885 2 0.00
887 2 0.00
888 1 0.00
889 5 0.00
890 2 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 262 0.11
895 3 0.00
896 112 0.05
897 139 0.06
898 8 0.00
899 271 0.11
905 63 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (878 bp):
GCAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCATTTTC
TATTTTTCACAATTTTTGAAACTCTTTACGGTTCGAGATTTTTTAAAATTTTTCGAAAGGAGTTT
TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCCGACCCCCCCGATCGCCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGAC
GATGGTGCCCCAGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGTATGTGCTACCGCA
ACCCGTCAGTCTAGGATACTAGCATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCG
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
Found at i:14888746 original size:26 final size:26
Alignment explanation
Indices: 14888695--14888747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14888685 TCGCTCCGAT
**
14888695 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14888721 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14888747 C
1 C
14888748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14889417 original size:876 final size:877
Alignment explanation
Indices: 14887228--14889610 Score: 3277
Period size: 876 Copynumber: 2.7 Consensus size: 877
14887218 TGGTCGGACG
14887228 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14887293 CTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCATGATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
** * * * ** *
14887357 CTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCCGATGGAGTTTTAACCCCAAACTTGGTATAC
131 CTTTTTACGGTTCGGGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
14887422 GTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
195 GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
* *
14887487 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAATCCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
14887552 TAAAATCTCAAA-AGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
325 TAAAATCTCAAATA-CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
14887616 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCTGCCCCGGCCCCTCCGA
389 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACC-CCCCCGGCCCCCCCGA
* * **
14887681 TCGTCGGAACCCCAACCCCTTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAA
452 TCGTCGGAACCCCAA--------T---G----CC-GTGATGCTCCAATGATGGTGCCCCGGTGAA
* * * * * *
14887746 GAAGAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG-TCTGGTCC
501 GAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGC-GCAACCCTCGGTTC-AGTCC
**
14887810 ACTCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCACATGACTAAGTCAA
564 A-TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCACATGACTAAGTCAA
* * * *
14887875 CCCAGAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGAGCGGGATGCGCAAGCCGGGGATCAG
628 CCCAGAAAACGAGCATACGGGCGCTAAGCCGACCAAAGGAGCGGGATGCGCAAGCCGGGGATCAG
* * *
14887940 TCGGGTCCCCCTCTACGTGCTACTGATCTTGCTGTCGTAACCCTCGGTCTGGTCGAATCTTAGAC
693 CCGGGTCCCCCTCTACGTGCTACCGATCTTGCTGCCGTAACCCTCGGTCTGGTCGAATCTTAGAC
* *
14888005 TGGGAATGAACTCCGTATGCCTAAGCCAACCAAAGAAACGAGCGGGCGGGCGGGCGGGCACTACG
758 TGGGAATCAACTCCGTATGCCTAAGCCAACCAAAGAAACGA--GAGCGGGCGGGCGGGCACTACG
* * *
14888070 CCGGCCAAAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
821 CCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAAGTGGGTTTA
14888127 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14888192 TTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTAAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
* *
14888257 CTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGGAAGGATTTTTGGCCCTAAACTTGGTAGAC
131 CTTTTTACGGTTCGGGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
14888322 GTGATCCCTGTATTTTTATTGGCATGCA-AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
195 GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
* *
14888386 TTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAACATG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
14888451 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
325 TAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
14888516 TATAAGGGCCAAGTACCCA-CACCCATCGCACATCATGAGCGAACACCCCCCCGGCCCCCCCGAT
390 TATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCG-ACACCCCCCCGGCCCCCCCGAT
** * *
14888580 CACCGAAACCCCAATGCCGTGATGCTCCAATGATGGTGCCCTGGTGAAGAAAAATACGACACCAG
453 CGTCGGAACCCCAATGCCGTGATGCTCCAATGATGGTGCCCCGGTGAAGAAAAATACGACACCAG
14888645 CACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTTC-GCTCCGATCTTAGACTGGGAAT
518 CACATGCCTGAGCCCAGCATGTGCTG-CGCAACCCTCGGTTCAG-TCC-ATCTTAGACTGGGAAT
* *
14888709 GAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATG-AAACGAGCAT
580 GAACTCTGTATGCTTAGACTGGGAATGAACTCCACATGACTAAGTCAACCCA-GAAAACGAGCAT
* * * * *
14888773 ACGGGCGTTAAGCCGACCATAGG-G-GGGATGTGCAAGTCGGGGATC-GACCGGGTCCCCCTCTG
644 ACGGGCGCTAAGCCGACCAAAGGAGCGGGATGCGCAAGCCGGGGATCAG-CCGGGTCCCCCTCTA
* * * *
14888835 TGTGCTACCGATCTTGGTGCCGTAACCCTTGGTCTGGTCTG-ATCTTAGACTGGGATTCAACTCC
708 CGTGCTACCGATCTTGCTGCCGTAACCCTCGGTCTGGTC-GAATCTTAGACTGGGAATCAACTCC
* * * *
14888899 GTATGCCTAAGCCAACCGACGAAAC-A-AGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGG
772 GTATGCCTAAGCCAACCAAAGAAACGAGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGG
*
14888962 GATGCGCTAGCCGTGGATCGACAGGGTGGTAAGTGGGTTTA
837 GATGCGCAAGCCGTGGATCGACAGGGTGGTAAGTGGGTTTA
* **
14889003 GGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14889068 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
* *
14889133 CTTTTTACGGTTCGGGATTTTTTATAATTTTTTTGGAAGGA-TGTTGGCCCCAAACTTGGTAGAC
131 CTTTTTACGGTTCGGGATTTTTTA-AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
14889197 GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAACCTCGAAGTGTACAAGAT
195 GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
* ** * *
14889262 TTTGTGACCACTTGAAAAAAGTGTCCCCATTTCGGACAGTTTAATGGCTACTGGCAGCAAACCTC
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
14889327 TAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAAGGATGGGGGGCCAA
325 TAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
14889392 TATAAAGGCCAACTACCAGCACCCATCGCACATCATGTGCG-CA-CCCCCCGGCCCCCTCGATTG
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCCCCGGCCCCCCCGATCG
* * *
14889455 TTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGGTGGTCCCCGGTGAAGAA
455 TCGGAACCCCAATGCCGT--G--A--TGCTCC-A--ATGAT-----GGT-G-CCCCGGTGAAGAA
* * *
14889520 AAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTTCAATC
504 AAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTG-CGCAACCCTCGGTTCAG-TCCATC
*
14889585 TTAGACAGGGAATGAACTCTGTATGC
567 TTAGACTGGGAATGAACTCTGTATGC
14889611 CTAAGCCAAC
Statistics
Matches: 1339, Mismatches: 115, Indels: 70
0.88 0.08 0.05
Matches are distributed among these distances:
873 32 0.02
874 2 0.00
875 52 0.04
876 418 0.31
877 1 0.00
879 7 0.01
880 111 0.08
881 3 0.00
882 171 0.13
883 7 0.01
887 4 0.00
888 1 0.00
889 93 0.07
890 4 0.00
898 26 0.02
899 308 0.23
900 99 0.07
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (877 bp):
GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
CTTTTTACGGTTCGGGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGTGATGCTCCAATGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCAC
ATGCCTGAGCCCAGCATGTGCTGCGCAACCCTCGGTTCAGTCCATCTTAGACTGGGAATGAACTC
TGTATGCTTAGACTGGGAATGAACTCCACATGACTAAGTCAACCCAGAAAACGAGCATACGGGCG
CTAAGCCGACCAAAGGAGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTAC
CGATCTTGCTGCCGTAACCCTCGGTCTGGTCGAATCTTAGACTGGGAATCAACTCCGTATGCCTA
AGCCAACCAAAGAAACGAGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
GCCGTGGATCGACAGGGTGGTAAGTGGGTTTA
Found at i:14890320 original size:26 final size:26
Alignment explanation
Indices: 14890291--14890340 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14890281 CTGGTCCGAT
14890291 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
14890317 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14890341 TACCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:14893630 original size:26 final size:26
Alignment explanation
Indices: 14893601--14893651 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14893591 TGGTCCGATC
*
14893601 TTAGACTAGGAATGAACTCTGTATGT
1 TTAGACTAGGAATGAACTCCGTATGT
*
14893627 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
14893652 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:14895955 original size:169 final size:169
Alignment explanation
Indices: 14895655--14895988 Score: 560
Period size: 169 Copynumber: 2.0 Consensus size: 169
14895645 CCAGCCAGAA
* * * *
14895655 AGACGGGATTTGCTAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTAC
1 AGACAGGATGTGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTAC
* *
14895720 TGGGTGCCAATGCCATTTTTATGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
66 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
14895785 GTTTCAAGGCAAGACGACTCATTTTTTATTTTTCACGTG
131 GTTCCAAGGCAAGACGACTCATTTTCTATTTTTCACGTG
* *
14895824 AGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTC
1 AGACAGGATGTGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTAC
14895889 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
66 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
14895954 GTTCCATGGCAAGACGACTCGTTTTCTATTTTTCA
131 GTTCCAAGGCAAGACGACTCATTTTCTATTTTTCA
14895989 TGATTTTCTA
Statistics
Matches: 153, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
169 153 1.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (169 bp):
AGACAGGATGTGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTAC
TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTCCAAGGCAAGACGACTCATTTTCTATTTTTCACGTG
Found at i:14896485 original size:26 final size:26
Alignment explanation
Indices: 14896456--14896508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14896446 CCGGTTCGAT
14896456 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
14896482 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
14896508 C
1 C
14896509 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:14898072 original size:26 final size:26
Alignment explanation
Indices: 14898043--14898093 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14898033 GGTCCGATCG
*
14898043 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
14898069 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
14898094 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:14899338 original size:887 final size:882
Alignment explanation
Indices: 14897335--14899643 Score: 2817
Period size: 881 Copynumber: 2.6 Consensus size: 882
14897325 ATCCGGTCTG
* ** *
14897335 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAATGACGAAACAAGCAGGCGGGTGGACG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGTGGGCG
* * *
14897400 GACGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCTGTGAATCGATAGGGTGGTAG
62 G-CGGGCGGGCACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
14897465 GTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCC-TTTTCTATGGCTTGTAAACTCAT
126 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT-TATGGCTTGTAAATTCAT
* *
14897529 ACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATG
190 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
14897594 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTGGAAGGATTTTTGGGCCAAAA
255 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GGCC-AAA
** *
14897659 CTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAATCGAAG
318 C-TGGTAGAAATGATCCTTGTATTTTT-TTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAG
*
14897724 TGTACAAAATTTTGTGACCATTTG----AA-------A----A-A-ACTTTAATGGCTACTGGCA
380 TGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * * *
14897772 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGCGGTTTGATGAAGGTTA
445 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
14897837 GGGGGCCAATATAAGGGCTAAGTACCAGCAACCATCGCACATCATGTGTGCACACCCCCCGGCCC
510 GGGGGCCAATATAAGGGCCAAGTACCAGC-ACCATCGCACATCATGTGCGAACACCCCCCGGCCC
* * * * *
14897902 CCTCGATCGCCGGAACCCCAATGTCATCGGTAAGGTTCTCTGACGATGCTCCGACGGTGGTGCCC
574 CCCCGATCACCGAAACCCCAATGTCATCGGTAAGGTTCTCTGACGATGCTCCGACGATGGAGCCC
*
14897967 CGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCTAACCCTCGATC
639 CGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCTAA--C-CGA-C
*
14898032 CGGTCCGATCGTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTA
700 CGGT-CGA--GT--ACT-GGAAT--ACT-CGTATGCTTAGACTAGGAATGAACTCCATATGCCTA
* ** * *
14898097 AGTCAACCCACGAAATGAGCGTCCAGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGT
756 AGTCAACCCACGAAACGAGCGTCCAGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCGGT
* * * * * * *
14898162 GATCGGCTGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCTACAACCCTCAGTTCGGTCCG
821 GATCGGCTGGGTCCCCCTCTGCATGCTACCGATCCTACTACCACAACCATCAGTCCAGTCCA
* *
14898224 ATCTTAGACTAGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGA----GTGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGC-GGCG
*
14898285 GGCGGGCACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGG
65 GGCGGGCACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
14898350 GTTTAAGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
14898415 GGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
14898480 TGAAACCTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAATGCCAAACTAGG
260 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT--GGCCAAACT-GG
* * * *
14898545 TAGAAATGATCCTTGTATTTTTATTGACATGCATAAAAAACTTCAACTAGAAACTCGAAGTGTAC
322 TAGAAATGATCCTTGTATTTTT-TTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTAC
14898610 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
385 AAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14898675 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
449 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
14898740 GCCAATATAAGGGCCAAGTACCAGCACCAATCGCAGATCATGTGCGAACACCCCCTCGGCCCCCC
514 GCCAATATAAGGGCCAAGTACCAGCACC-ATCGCACATCATGTGCGAACACCCCC-CGGCCCCCC
* * * * * *
14898805 CGATCATCGAAACCTCAATGTCGTTGGTCAGGTTCTCTGGTGATGCTCCAGCGATGCTCCGGCGA
577 CGATCACCGAAACCCCAATGTCATCGGTAAGGTTCTC------TG----A-CGATGCTCCGACGA
* *** *
14898870 TGGAGCCCC-AGCGAAGCAAAATTTGGCACGAGCACATGCCCGAGCCCAG-ATGTGCTGCCAC-A
631 TGGAGCCCCGA-CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-CTA
*
14898932 A-C-A-C-GT-G-GT-CT-G-AT-CT-G-AT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGT
694 ACCGACCGGTCGAGTACTGGAATACTCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGT
* * *
14898984 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCAGGATTCACAAGCC-GTGGA
759 CAACCCACGAAACGAGCGTCCAGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCGGT-GA
* * ** *
14899048 TCGG-TCGGGT-CCCCTCTGCGTGCTACCGATCCTGCTACCGGAACCATCGGTCCAGTCCA
823 TCGGCT-GGGTCCCCCTCTGCATGCTACCGATCCTACTACCACAACCATCAGTCCAGTCCA
14899107 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGC-GGCG
* * * * *
14899172 GGCGGGCACTACG-CTGGCCAGAGAAATAGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTA
65 GGCGGGCACTACGTC-GGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * ** *
14899236 GGTTTAGGCGCATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAA
129 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
14899301 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGGCTCGTTCTCTATTTTTCACGATTT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
14899366 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC---C-----
259 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCAAACTGGTA
*
14899423 --CA--A--C--GTAATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
324 GAAATGATCCTTGT-ATTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
14899480 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACATTTTAATGGCTACTGGTAGCAAGC
387 GATTTTGTGACCATTTG-AAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14899545 CTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
451 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14899610 CAATATAAGGGCCAAGTACTAGCACCCATCGCAC
516 CAATATAAGGGCCAAGTACCAGCA-CCATCGCAC
14899644 GTCAGTCAGA
Statistics
Matches: 1253, Mismatches: 118, Indels: 119
0.84 0.08 0.08
Matches are distributed among these distances:
868 183 0.15
869 20 0.02
870 1 0.00
872 1 0.00
874 1 0.00
880 3 0.00
881 310 0.25
882 10 0.01
883 88 0.07
884 92 0.07
885 7 0.01
886 3 0.00
887 234 0.19
888 2 0.00
889 43 0.03
891 2 0.00
892 1 0.00
893 1 0.00
894 2 0.00
897 3 0.00
898 4 0.00
899 129 0.10
900 39 0.03
902 2 0.00
903 1 0.00
905 1 0.00
906 3 0.00
910 14 0.01
911 53 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (882 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGCGG
GCGGGCACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCAAACTGGTAGA
AATGATCCTTGTATTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGAACACCCCCCGGCCCCCCCGATCACCG
AAACCCCAATGTCATCGGTAAGGTTCTCTGACGATGCTCCGACGATGGAGCCCCGACGAAGAAAA
ATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCTAACCGACCGGTCGAGTACTGGAA
TACTCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTCCA
GGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCGGTGATCGGCTGGGTCCCCCTCTGCATG
CTACCGATCCTACTACCACAACCATCAGTCCAGTCCA
Found at i:14900323 original size:26 final size:26
Alignment explanation
Indices: 14900287--14900339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14900277 CTGGTCTGAT
*
14900287 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14900313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14900339 C
1 C
14900340 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14900931 original size:17 final size:17
Alignment explanation
Indices: 14900899--14900932 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14900889 GATCGCCAGA
*
14900899 ACCCCAATACCGCCGGT
1 ACCCCAATACCACCGGT
*
14900916 ACCCCAATGCCACCGGT
1 ACCCCAATACCACCGGT
14900933 CAGGTTCTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.47, G:0.18, T:0.12
Consensus pattern (17 bp):
ACCCCAATACCACCGGT
Found at i:14901980 original size:26 final size:26
Alignment explanation
Indices: 14901944--14901996 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14901934 CCAGTCTGAT
14901944 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14901970 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14901996 C
1 C
14901997 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14907381 original size:22 final size:22
Alignment explanation
Indices: 14907354--14907399 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
14907344 ATCTCAAGCA
14907354 CACACACAACAAGGCACATTCG
1 CACACACAACAAGGCACATTCG
14907376 CACACACAACAAGGCACATTCG
1 CACACACAACAAGGCACATTCG
14907398 CA
1 CA
14907400 TCAAGAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.37, G:0.13, T:0.09
Consensus pattern (22 bp):
CACACACAACAAGGCACATTCG
Found at i:14909028 original size:26 final size:26
Alignment explanation
Indices: 14908977--14909029 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14908967 CCGGTCCGAT
* *
14908977 CTTAGACTAGGAATTAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14909003 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCATATG
14909029 C
1 C
14909030 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14910912 original size:716 final size:715
Alignment explanation
Indices: 14909158--14911312 Score: 3023
Period size: 718 Copynumber: 3.0 Consensus size: 715
14909148 GGTCTGGCCT
* * * * *
14909158 GATCTTAGTTTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGACACGAGC-GGGTGGGCAGG
1 GATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGGGCGGG
* * *
14909222 CGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* *
14909287 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
*
14909352 TCACT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
196 TC-CTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTT
* * *
14909416 GAAACTTTTTATGGTTC-GAGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGG
259 GAAACTTTTTACGGTTCGGA-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
** *
14909479 TAGACGTGATCCTTGTATTCTTGTTGGCATGTACAAAAAACTTCAGCTAAAAATTCGAAGTGTAC
323 TAGACGTGATCCTTGTATT-TTGTTGGCATGTACAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
* *
14909544 AAGATTTTGGGACCATTTGAAAAAAGTGT-TCCCATTTTAGACACTTTAATGGCTACTCGCAGCA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCT-CCATTTTAGACACTTTAATGGCTACTGGCAGCA
* * *
14909608 AACCTGTAAAATCTCAATTGCTATTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
14909673 GGCCGATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCC
* *
14909738 CCGATTGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCGGC-GATGCTCCGACGATGGTGCCC
581 CCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCAGATGCTCAGACGATGGTGCCC
* * **
14909801 CGGCAAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCATAACCCTCTGTC
645 CGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCTGTC
*
14909866 CAGTCT
710 CAGTCC
* * *
14909872 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCGACTGACGAAACGAGCGGGTGGACGGGC
1 GATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GG--GGGC
* *
14909937 GGGTGGGCACTACGTCGGCCAGAGACACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
63 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
*
14910002 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTAATGGCTTGTAAATTCATACAA
128 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAA
** * *
14910067 TCATCC-CTTAAGCCTTCACGTAATGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATA
193 TGGTCCTC-TAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT-
* *
14910131 TTTGAAACTTTTTACGGCTCGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACT
256 TTTGAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACT
* *
14910195 TGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGT
320 TGGTAGACGTGATCCTTGTATTTTGTTGGCATGTACAAAAAAAATCAGCTAAAAACTCGAAGTGT
14910260 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAGC
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAGC
* * *
14910325 AAACCTGTAAAATCTTAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATATG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
14910390 GGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCGCACACCCCCCTGG-CCC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCC
* * *
14910454 CCCGATCGTCGAAACCCCAATACCGCTGGTCAGGTTCTCCGGCAG-TGCTCAGGCGATGGTGCCC
580 CCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCAGATGCTCAGACGATGGTGCCC
** * * *
14910518 CGGCGAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCATCATGTGCTGCCGCAACCCTCTTTC
645 CGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCTGTC
14910583 C-GATCC
710 CAG-TCC
* * * * *
14910589 GATCTTAGGTTGGGAATGGACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGGGGTG
1 GATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG--GGGGGCG
* *
14910654 GGCGGGAATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
64 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
* * *
14910719 GTTTAGGCACATCTTCATGTTTCTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAAT
129 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAAT
* *
14910784 GGTCCTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAGGATTTT
194 GGTCCTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
14910849 CAAAACCTTTTACGATTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
259 -GAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* * *
14910914 TAGACGTGATCTTTGTATTTATGTTGGCATGTACAAAAAGAATCAGGC-AAAAACTTGAAGTGTA
323 TAGACGTGATCCTTGTATTT-TGTTGGCATGTACAAAAAAAATCA-GCTAAAAACTCGAAGTGTA
* * * * * *
14910978 CAAGATTTTGTGACCATTCGAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTGGCAGTA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAGCA
* * * * *
14911043 GACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGATTCAAGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* ** * ** *
14911108 GGCCAATATAAAGGCCAAGTATGAGCACCCATTGCACATCATGCACGCACA-CCCCTTCGGCCCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT-GGCCCC
* * * * * * * *
14911172 CCCGATCGTCGGAACCCAAATGCCGCCGATTAGGTTCT-CTG-ATGACGCTCTGACTATGGTGCC
580 CCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCA-GATGCTCAGACGATGGTGCC
* * * *
14911235 CCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGGCCAGCATCTGCTGTCGCAACCCTC-GA
644 CCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCTG-
14911299 TCTC-GTCC
708 TC-CAGTCC
14911307 GATCTT
1 GATCTT
14911313 TAAGGGGTGT
Statistics
Matches: 1281, Mismatches: 134, Indels: 48
0.88 0.09 0.03
Matches are distributed among these distances:
714 47 0.04
715 5 0.00
716 264 0.21
717 370 0.29
718 533 0.42
719 62 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
GATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGGGCGGG
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
TCCTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGA
AACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTGTTGGCATGTACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGAT
CGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCAGATGCTCAGACGATGGTGCCCCGGCGA
AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCTGTCCAGTCC
Found at i:14911592 original size:26 final size:26
Alignment explanation
Indices: 14911542--14911594 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14911532 CCGGTCTGAT
* * **
14911542 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14911568 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14911594 C
1 C
14911595 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14912471 original size:26 final size:26
Alignment explanation
Indices: 14912442--14912494 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14912432 TCGGTCCGAT
*
14912442 CTTAGACTGGGA-ATAAACTTCGTATG
1 CTTAGACT-GGATATAAACTCCGTATG
*
14912468 CTTAGACTGGATATGAACTCCGTATG
1 CTTAGACTGGATATAAACTCCGTATG
14912494 C
1 C
14912495 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGATATAAACTCCGTATG
Found at i:14915557 original size:26 final size:26
Alignment explanation
Indices: 14915521--14915573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14915511 CTGGTTCGAT
*
14915521 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14915547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14915573 C
1 C
14915574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14916397 original size:903 final size:897
Alignment explanation
Indices: 14914646--14917003 Score: 3221
Period size: 903 Copynumber: 2.6 Consensus size: 897
14914636 GGTCTGAACA
* * *
14914646 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAACCGAGCATGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* * * * *
14914711 GACAGAGGGGCGGGATGCGCAAGAAGGGGATCGGTCGGATCCCCCTCTACGTGCTACCGATCCTG
66 GCCAGAGGGGCAGGATGCG-AA-ACGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTG
* * * * * *
14914776 C-AGCCGTAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAC
129 CTA-CTGCAACCCTCGTTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
14914840 CGATGAAATGAGCAGGCGGGCGGTCGGGCAGGCATTATGCCTGCTAGAGAGACGGGAAGCGCAAG
193 CGA--AAAAGAGCGGGCGGGCGGGCGGGCGGGCATTACGCCAGC-AGAGAGACGGGATGCGCAAG
* * * **
14914905 CCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCGCATCTTTGTATTTCTGTACGCCAATGCCAT
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGTGTGCCAATGCCAT
*
14914970 TTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
320 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * ** * *
14915035 ACTCATTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTTGAAATTTTTTTAAATTTTTTT
385 ACTCGTTTTTTATTTTTCATGATTTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC
* * * *
14915100 GAAAGGAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTAATTTTTTTGGCATGCACAAAAA
450 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATAATTTTATTGGCATGCACAAAAA
* *
14915165 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTTCA
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGAGTCCCCATTTCA
* * * *
14915230 GACATTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGT
580 GACATGTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGCGGTGTGAGT
14915295 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATC
14915360 ATGTGCGCACACCCCCCGACCCACCCGATCGTCGGAACCAAAATGCCACCGGTCAGGTTCTCTAG
710 ATGTGCGCACACCCCCCGACCCACCCGATCGTCGGAACCAAAATGCCACCGGTCAGGTTCTCTAG
14915425 TGATGCTCTGGTGATGGTGCCCCGGAAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACA
775 TGATGCTCT-GTGATGGTGCCCCGGAAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACA
* *** *
14915490 TGTGCTGCCACCACCCTTGGTCTGGT-TCGATCTTAGAGTGGGAATGAACTCCGTATGCT
839 TGTGCTGCCACAACCCTCAATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCT
*
14915549 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCACTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* *
14915614 GCCAGAGGGGCAGGATGCGTAAATCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTG
66 GCCAGAGGGGCAGGATGCG-AAA-CGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTG
* *
14915679 CTACTGCAACCCTCCTTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACC
129 CTACTGCAACCCTCGTTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
14915744 GACAAAAGGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCAGTCAGAGAGACGGGATGTGCAAGC
194 GA-AAAA-GAGCGGGCGGGCGGGCGGGCGGGCATTACGCCAG-CAGAGAGACGGGATGCGCAAGC
* *
14915809 CTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGGGTGCCAATGCCATT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGTGTGCCAATGCCATT
* *
14915874 TTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14915939 CTTGTTTTTTATTTTGCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCG
386 CTCGTTTTTTATTTTTCATGATTTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG
* * * * * *
14916004 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTATACTTTTGTTGGCTTGTACAAAAAA
451 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATAATTTTATTGGCATGCACAAAAAA
* *
14916069 ATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAG
516 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGAGTCCCCATTTCAG
14916134 ACATGTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTGAAGGCGGTGTGAGT
581 ACATGTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTT-AAGGCGGTGTGAGT
* * * *
14916198 TCTCGAGGTTTGTTGAGGGATAGGGGGTCAATATAAGGGCCAAGTATCAGCACCCATCGCACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATC
* * ** ****
14916263 ATGTGCGCACCCCCCCCAGGCCC-CCCTGATCG-CTGGAACCCCAATGCTGTTGGTCAGGTTCTC
710 ATGTGCGCACACCCCCC-GACCCACCC-GATCGTC-GGAACCAAAATGCCACCGGTCAGGTTCTC
** * *
14916326 T-GATGAT-CTCCT-TCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCTGAGCC
772 TAG-TGATGCT-CTGT-GATGGTGCCCCGGAAAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
14916388 CATCATGTGCTGCCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCT
834 CAACATGTGCTGCCACAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
14916452 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCTCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* * * * * * **
14916517 GCCGGAGGGG-AGGGATGTGCAAGCGGGGGATCGGCCAGGTCCCACTCTACGAGCTGTCGATCCT
66 GCCAGAGGGGCA-GGATGCG-AAAC-GGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCT
* * * *
14916581 GCTGCTGCAACCCTCGGTT-TGGTCTGATCTTAGAATGGAAATGAACTCCGTACGCCTAAGCCAA
128 GCTACTGCAACCCTC-GTTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
14916645 TCGATGAA-A-CGAGCGGGCGGGCGAGCGGGCATTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
192 CCGAAAAAGAGCGGGCGGGCGGGCGGGCGGGCATTACGCCAG-CAGAGAGACGGGATGCGCAAGC
* * *
14916708 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGTGTGCCAATGCCATT
* * *
14916773 TTTATTGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
14916838 CTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTGAAAATTTTTTCG
386 CTCGTTTTTTATTTTTCATGATTTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG
* * *
14916903 AAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGA-ATTTTTATTGGCGTGCACAAAAA
451 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-ATAATTTTATTGGCATGCACAAAAA
* *
14916967 AATTCAGCTATAAACTCGACGTGTACAAGATTTTGTG
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
14917004 TGCACACCCC
Statistics
Matches: 1284, Mismatches: 155, Indels: 36
0.87 0.11 0.02
Matches are distributed among these distances:
899 313 0.24
900 2 0.00
902 12 0.01
903 913 0.71
904 44 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (897 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
GCCAGAGGGGCAGGATGCGAAACGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTGCT
ACTGCAACCCTCGTTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
AAAAGAGCGGGCGGGCGGGCGGGCGGGCATTACGCCAGCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGTGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTTTATTTTTCATGATTTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATAATTTTATTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGAGTCCCCATTTCAGACATG
TTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGCGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGC
GCACACCCCCCGACCCACCCGATCGTCGGAACCAAAATGCCACCGGTCAGGTTCTCTAGTGATGC
TCTGTGATGGTGCCCCGGAAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
CCACAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
Found at i:14916460 original size:26 final size:26
Alignment explanation
Indices: 14916424--14916476 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14916414 CTGGTCTGAT
*
14916424 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14916450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14916476 C
1 C
14916477 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14917049 original size:17 final size:17
Alignment explanation
Indices: 14917029--14917068 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
14917019 GCCCCCCGAT
14917029 CGCCGGAACCCCAATGC
1 CGCCGGAACCCCAATGC
*
14917046 CGCCGGTACCCCAATGC
1 CGCCGGAACCCCAATGC
*
14917063 CACCGG
1 CGCCGG
14917069 TCAGGTTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.20, C:0.47, G:0.25, T:0.07
Consensus pattern (17 bp):
CGCCGGAACCCCAATGC
Found at i:14918110 original size:26 final size:26
Alignment explanation
Indices: 14918081--14918133 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14918071 CCAGTCCGAT
14918081 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14918107 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14918133 C
1 C
14918134 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14925390 original size:370 final size:370
Alignment explanation
Indices: 14924708--14925827 Score: 1999
Period size: 370 Copynumber: 3.0 Consensus size: 370
14924698 AGCGTGCGGG
* * * *
14924708 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGCGCATTCACCCTTTCG
1 TGTCACGGGTCGAGACTCAAGCTCTGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * *
14924773 ACGTCCCGGATCAGCCTGACCGTCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
66 GCGTCCCGAATCAGCCTGACCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGG-CCCC
* * *
14924838 CTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCAAAGGTGGTGTGAACCCTTTTAT
130 CTGGCCTCACGGTTTTGTCCTATAAAAGGCGCCTCACAAGGCGAAGATGGTGTGAACCCTTTTAT
* ** *
14924903 ACCCTAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATT
195 ACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGATCCGTGACATT
*
14924968 CTCTCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGAG
260 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGAG
14925033 GCGCTCGACGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
325 GCGCTCGACGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
14925079 TGTCACGGGTCGAGACTCAAGCTCTGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTCAAGCTCTGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
14925144 GCGTCCCGAATCAGCCTGACCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
66 GCGTCCCGAATCAGCCTGACCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
* *
14925209 TGGCCTCACGGTTTTGTCCTATAAAAGGTGCCTCACAAGGCGTAGATGGTGTGAACCCTTTTATA
131 TGGCCTCACGGTTTTGTCCTATAAAAGGCGCCTCACAAGGCGAAGATGGTGTGAACCCTTTTATA
*
14925274 CCCCAGAGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGATCCGTGACATTC
196 CCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGATCCGTGACATTC
14925339 TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGAGG
261 TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGAGG
* *
14925404 TGCTCGACGTGGATCGAACGGTTTAGGGCTGGCTCTGATAGCACT
326 CGCTCGACGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
*
14925449 TGTCACGGGTCGAGACTCAAGCTCTGAACCCGCGCGGCTCCAGGACCCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTCAAGCTCTGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
14925514 GCGTCCCGAATCAGCCTGACCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
66 GCGTCCCGAATCAGCCTGACCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
*
14925579 TGGCCTCACGGTTTTGTCCTATAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATA
131 TGGCCTCACGGTTTTGTCCTATAAAAGGCGCCTCACAAGGCGAAGATGGTGTGAACCCTTTTATA
*
14925644 CCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGCTCCGTGACATTC
196 CCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGATCCGTGACATTC
14925709 TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGAGG
261 TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGAGG
*
14925774 CGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCAAC-
326 CGCTCGACGTGGATCGAACGGTTTAGGGCTGGCTCTGATACC-ACT
14925819 TGTCACGGG
1 TGTCACGGG
14925828 CTCCGACCTT
Statistics
Matches: 720, Mismatches: 28, Indels: 3
0.96 0.04 0.00
Matches are distributed among these distances:
370 600 0.83
371 120 0.17
ACGTcount: A:0.17, C:0.35, G:0.26, T:0.23
Consensus pattern (370 bp):
TGTCACGGGTCGAGACTCAAGCTCTGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
GCGTCCCGAATCAGCCTGACCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
TGGCCTCACGGTTTTGTCCTATAAAAGGCGCCTCACAAGGCGAAGATGGTGTGAACCCTTTTATA
CCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGATCCGTGACATTC
TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGAGG
CGCTCGACGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
Found at i:14928004 original size:26 final size:26
Alignment explanation
Indices: 14927953--14928005 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14927943 CCAGTCCAAT
* *
14927953 CTTAGACTAGGAATTAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14927979 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCATATG
14928005 C
1 C
14928006 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14930289 original size:718 final size:716
Alignment explanation
Indices: 14928134--14930289 Score: 3136
Period size: 718 Copynumber: 3.0 Consensus size: 716
14928124 GGTCTGGCCT
* * * *
14928134 GATCTTAGTTTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG--AC-A-CGAGCGGGTGGTC
1 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGT-
* * *
14928195 GGGTGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTG
65 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
14928260 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTACTTGTAAATTCATACAA
130 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGACTTGTAAATTCATACAA
*
14928325 TGGTCACT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
195 TGGTC-CTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
14928389 TTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTT
259 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* * *
14928454 GGTATACGTGATCCTTGTATTCTTGTTGGTATGTA-AAAAAAAATTCAGCTAAAAACTCGAAGTG
324 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAA-TCAGCTAAAAACTCGAAGTG
* * *
14928518 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTCGCAG
388 TACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14928583 CAAACCTGTAAAATCTCAATTGCTATTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14928648 GGGGCCGATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
518 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
*
14928713 CCCGATCGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
583 CCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCC-GTGATGCTCAGACGATGGTGCCC
* * *
14928777 CGGCAAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCTGTC
646 CGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTC
**
14928842 TAG-TC
711 CCGTTC
* * * *
14928847 TGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCGGGCGGACGGG
1 -GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-GGGG
* * * *
14928912 CGGGCGGGCACTACGTCGGCCAGAGACACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGT
64 TGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
14928977 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTAATGCCTTGTAAATTCATACA
129 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGACTTGTAAATTCATACA
** * *
14929042 ATCATCCCCTAAGCCTTCACGTAATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
194 ATGGTCCTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
14929107 TTTGAAACTTTTTACGGCTCGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACT
259 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACT
* * *
14929171 TGGTAGACATGATCCTTGTATTTTT-TTTGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTG
323 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAATCAGCTAAAAACTCGAAGTG
* *
14929235 TACAAGATTTTGTGACCATTTGAAAAAGATGTCTCCATTTCAGACACTTTAATGGCTACTGGCAG
388 TACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14929300 CAAACCTGTAAAATCTTAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAT
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
14929365 GGGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCGCACACCCCCCTAG-CC
518 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCC
* *
14929429 CCCCGATCGTCGGAACCCCCAATGCTGCTGGTCAGGTTCTCCG-GCAGTGCTCAGGCGATGGTGC
582 CCCCGATCGTCGGAA-CCCCAATGCCGCTGGTCAGGTTCTCCGTG-A-TGCTCAGACGATGGTGC
**
14929493 CCCGGCGAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCT-
644 CCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTG
* *
14929557 TTCCGATCC
709 TCCCG-TTC
* * *
14929566 GATCTTAGGTTGGGAATGGACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGTG
1 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGTG
*
14929631 GGCGGGCACTACGTCGGCCAGATAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
14929696 GTTTAGGCACATCTTCATGTTTCTACATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGACTTGTAAATTCATACAAT
* *
14929761 GGTCCTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAGGATTTT
196 GGTCCTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * *
14929826 CAAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGG
261 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
*
14929891 TAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAATCAGGC-AAAAACTTGAAGTGTA
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAATCA-GCTAAAAACTCGAAGTGTA
* *
14929955 CAAGATTTTGTGACCATTCGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * *
14930020 GACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGATTCAAGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* ** * ** *
14930085 GGCCAATATAAAGGCCAAGTATGAGCACCCATTGCACATCATGCACGCACACCCCTTCGGCCCCC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCC
* * * * * * *
14930150 CCGATCGTCGGAACCCCAATGCCGCTGATTAGGTTCTCTGATGATGCTCTGACTACGGTGCCCCA
584 CCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG-TGATGCTCAGACGATGGTGCCCCG
* * * *
14930215 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGGCCAGCATCTGCTGTCGCAACCCT-TGATCC
648 GCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTG-TCC
14930279 CGTTC
712 CGTTC
14930284 GATCTT
1 GATCTT
14930290 TAAGGGGGTG
Statistics
Matches: 1286, Mismatches: 132, Indels: 44
0.88 0.09 0.03
Matches are distributed among these distances:
714 40 0.03
716 3 0.00
717 489 0.38
718 724 0.56
719 29 0.02
720 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (716 bp):
GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGTG
GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGACTTGTAAATTCATACAAT
GGTCCTCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGTGATGCTCAGACGATGGTGCCCCGGCG
AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTCCCGTT
C
Found at i:14930570 original size:26 final size:26
Alignment explanation
Indices: 14930520--14930572 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14930510 CCGGTCTGAT
* * **
14930520 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14930546 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14930572 C
1 C
14930573 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14931461 original size:26 final size:26
Alignment explanation
Indices: 14931420--14931472 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14931410 CCGGTCTGAT
*
14931420 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14931446 CTTAGACT-GGATATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
14931472 C
1 C
14931473 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14933638 original size:26 final size:26
Alignment explanation
Indices: 14933609--14933681 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
14933599 CTGATCCGAT
14933609 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
14933635 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
14933661 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
14933682 ATATGCCTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:14934991 original size:892 final size:895
Alignment explanation
Indices: 14933099--14945233 Score: 12356
Period size: 903 Copynumber: 13.4 Consensus size: 895
14933089 ACTCAGTCCA
*
14933099 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
14933164 GAAACTTTTTGCGTTTGGAGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTAGG
66 GAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
14933228 TAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTAC
130 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14933293 AAGATTTTGTGACCATTTGAAAAAAGTGT--CCA-TTCAGACACTTTACTGGCTACCGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14933355 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
14933420 GCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTTGGCCCCTC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCC-C
* ** *
14933485 CGATCGTCAGAACCCCAATGTTGCCGGTCAGGTTCT-C--CG--G-T-----GAGGGTGCCCCGA
388 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
* ** * *
14933539 TGAA-AAAAATATGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGA
453 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C---
*
14933603 TCCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATACTTAGAC
509 T-CGA---T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
14933668 TGGGAATGAACTCCATATGCCTAAGTCTACCTACGAAATGAGCGTGCGGGCGCGCAGCCGGCCAG
557 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * * *
14933733 AGGGCCGGGATGTGTAAGCTGGGGATCGGCCGGGTCCCCCTCTTCATGCTGCTGATCCTACTACT
622 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACT
* ** * * ** *
14933798 GCAACCCTCAGTTTGGTCCGATCTTCGACAGGGAATGAACTCTATATGCCTAAGCCAATCGACGA
687 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
14933863 AACGAGCGGACGGGCGGACGGGCACTACGTCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATCG
752 AACGA---GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * * *
14933928 ATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTCTAGAT
814 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
*
14933992 TTTAAATTCATACAATG
879 TGTAAATTCATACAATG
* *
14934009 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
14934074 AAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCGAACATGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
14934139 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
131 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14934204 AGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG-AAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
14934268 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* **
14934333 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACA-CCCCCGGCCCTTCGA
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * ** *
14934397 T-GATCGAAACCCCAATGCCAG-CAGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGAC
391 TCG-TCGGAACCCCAATGCC-GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * *
14934460 GAAGAAAAATGCAGCACCAGCAGATGCCCGAGCCTAGCATGTGCTGCCCCAACCCTCGATCTGGT
454 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGT
* * *
14934525 CCGATCTTAGACTGTGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTC
519 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
14934590 AACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCTAGAGAGGCGGGATGCGCAAGCCGGGGATC
584 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* ** * * * * * *
14934655 GGTCGGGTCCTTCTCTGTGTGCTACCAATCCTGCTACTGCAACCCTTGGTCCAGTCCAATCTTAG
649 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGATCTTAG
* * *
14934720 ACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGA-ATGGGCGTGCGGGCACTACGC
714 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCACTACGC
14934784 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
779 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
14934849 TCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATG
844 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14934901 GTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
14934966 GAAACTTTTTACGGTTCAAGATTTTTCAAAATTTTTTCAGACA-GAGTTTTTAGCCCCAAATTTG
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA-AGGAG-TTTTGGCCCCAAACTTG
* * *
14935030 GCT-GACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGT
129 G-TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
14935094 ACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAG
193 ACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14935159 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGGTTGATGAGGGATAG
257 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14935224 GGGGCCAATATAAGGGCCAAGTACCGGAACCCATCGCACATCATGTGCGCACACCCCCCGGCTCC
322 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CC
* * *
14935289 CCCGATCGACGGAACCCCAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGACGATGGTGCCCC
386 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
** * *
14935354 GGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
451 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCT
** * * * * *
14935419 AATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGCCTAGGAATGAACTGCGTATGCCTCA
516 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
14935484 GTCAACCCATGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGCGCAAGCTGGGG
581 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * *
14935549 ATCAGCCGGGTCCCCCTCTGCGTGTTGTCGATCTTGCTACCGCAACCCTCGGTCTGATCTGATCT
646 ATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGATCT
14935614 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGTGCGGGCC
711 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GA-C--G-G-GC--G--
* * *
14935679 GGCGGGCACTACGCCGGTCAGAGAGACGGGATGTGCAAGCCGTGGATCGATTGGGTGGTAGGTGG
765 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * *
14935744 GTTTAGGTACATCTCCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATACATACAAT
830 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
14935809 G
895 G
* * *
14935810 G-CCCATTAGGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
1 GTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
**
14935874 TGAAACTTTTTACCATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
65 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
14935939 TAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAACAATTCAGCTAAAAGCTTGAAGTGTAC
130 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
14936004 AAGATTTTGTGACTATTTGAAAAAAGCGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14936069 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
14936134 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCC-GACCCCCG
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * ** * * *
14936198 ATGGTCGGAACCCCAATGCCGACGGTTAGGTTCTCCGGTGATGCTCTGGTGATGGTGCCCCGGCG
390 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* * * * *
14936263 AAGGAAAAATGTGGCACCAGCAGAAAAATTTGGTACCAGCACATTCCTGAGCCCAGGATATGCTA
455 AA-GAAAAATGCGGCACCAGC----ACA-----T----G--C---CC-GAGCCCAGCATGTGCTG
* * * * * *
14936328 CCGTAACCCTTGGTCCGGTCTGATCCT-GCACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
500 CCGCAACCCTCGATCTGGTCCGATCTTAG-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
*
14936392 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
564 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * ** * *
14936457 GGTTGCTCAAGCCGGGCATCGG-TGGGTCCCCCTCTATGTGCTGCCAATCCTGCTAGTGCAACCC
629 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCC
* * * * *
14936521 TCGGTTCGATCTGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCGATGAAACGAGC
694 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--
*
14936586 GAGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGT
757 GA-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
14936650 GGTAGGTGGGTTTAGGCACATCTTCATTTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
821 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
14936715 TCATACAATG
886 TCATACAATG
* * * *
14936725 GTCCCATAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
14936790 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAATGAGTTTTTAGCCCCAAACTTGG
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGG
** *
14936855 TAGACGTCCTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTAC
130 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14936920 AAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
14936985 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGGTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14937050 GCCAATATATGGGCCAAGTACCAGCACCCATCGTAAATCATGTGCGCACACCCCCCCGGCCCTCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC-CC
* * * * *
14937115 CGATCGACGGAACCTCAATGTCGCCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCC-A
388 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
* ** * * *
14937179 GTGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCTGCAACCCTCGATCCG
453 -CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTG
* * * * *
14937244 ATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTCCGTATGCCTCAT
517 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
14937309 TCAACCCACGAAACGAACATGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCAGGGA
582 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* ** * * * * ** ** * *
14937374 TCGGCTGGGTCCCTTTCTGCATGTTGTCGATCCTGCTGCTGCAACCCTCAATTTGATCTGATCTT
647 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGATCTT
* *
14937439 AGACTGTGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGAGCGGGCGGGCGGGCAC
712 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GA-CGGGCGGGCGGGCAC
** * * *
14937504 TACTTCGGCCAAAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
774 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
14937569 CATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
839 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
14937626 GCCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCATTTTCTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
14937691 GAAACTTTTTACTGTTCGAGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
14937755 AGACGTCATCCTTGTCTTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACA
131 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
14937820 AGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14937885 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
14937950 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
* * * * * *
14938015 ATCGTTGGAACCACATTACCGCCTGTCAGGTTAT-C--CGA---T-----GATGGTGCCCCGACG
390 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* * * * *
14938069 AA-AAAAATTACGGCACCAGCACAT-CCTCG-GTCCGGTCCGATCTTAGACTG--GGAA---T-G
455 AAGAAAAA-TGCGGCACCAGCACATGCC-CGAGCCCAG--C-AT-GT-G-CTGCCGCAACCCTCG
* * * ** ** * * * * **
14938125 AACTCTGTATGCCTAAGTC-AACCCACGAAACGAACGTGCGTGTGCTCAGTCGGCCAGAGGGGCG
512 -A-TCTG-GT-CC-GA-TCTTAGACTGGGAATGAAC-TCCGTATGCT---T-----AGA-CTG-G
* * * ** ** ** * * * **
14938189 GGATGCGCAAGC-CGAGGATCGGTTGGGTCCCCTCTGCGTGCTGCCAATCTTA-C-TGCTGCAAC
560 GAAT--G-AA-CTC-CGTAT-GCCTAAGTCAAC-C--C--AC-G--AAAC-GAGCGTGC-G-GGC
* * ** * * * *** ****
14938251 CCTCGGTCCGGTCCA-ATCTTAGACTGGGAATGAACTTCCTATGCCTAAGCCAATCGATGAAAAG
608 GCTCAG-CCGG-CCAGA---GGGGC-GGG-ATG--C--GC-AAGCC---GGGGATCG--GCCGGG
****** ** * * * ** * * * ****
14938315 AGTAGGTGGGCGGGCGGGCGGGCACT-ATACT-TAGA--CTGGGAATGAACTCCGTATACTTAGA
656 TCCCCCTCTGCGTGCTGCCGATC-CTGCTACTGCA-ACCCTCGG--TCCGGTCCG-AT-CTTAGA
* * * * *
14938376 CTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCATATGCCTAAGTCTACCTACGAAA
715 CTGGGAATGAACTCCG--TA--T-GCCT---AA-G----CCA-A--CC---GACGA--AACGAGA
* * * * * * * * * * * ***
14938441 TGAGCGTGCGGGCGC-GCAGCCGGCCAGAGGGCCGGGATGTGTAAGCTGGGGATCGGCCGGGTCC
759 CGGGCGGGCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG---
** * * * * * * * *
14938505 CCCTCTTCATGCTGCTGATCCTACTACTGCA-ACCCTCAGT-TTGGTCCGATCTTCGACAGGGAA
820 ---TGGT-A-GGTG--GGT--T--TA-GGCACATCTTCA-TATT--TCTG--CGT-G-C---CAA
* * * * * ** * * **
14938568 TG-AACTCTATATGCCTAAGCCAATCGACGAAACGAGCG
863 TGCCA-TTTTTATGGCT-TGTAAAT--TC-ATAC-AATG
* * ** * *** *
14938606 GACGGGCGGACGGGCAC-T-ACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGG
1 GTC--CCTTA--AGC-CTTCACGT--G---AAGTTTC---ATG-GCAAGAC---GACTCG-T---
* ** * * * * * * *
14938668 GTGGTAGGTGGGTTTAGGCAC-A-TCTTCAAA-TTTCTA-TGTGCCAATGCCATTTTTATGGCTT
45 TTTCTA--T---TTT--TCACGATTTTTGAAACTTTTTACGGT-TCGA-G--A--TTT-T---TT
* ** * * * * ** * * *** **
14938729 GCAAATTCATAC--AATG-GTCCTTGAAGCCTTCACGTGAA-GGGGTTTTGGCCCCAAACTTGGT
93 -AAAATTTTTTCGGAAGGAGT-TTTG--GCC--C-C--AAACTTGG--TAGACGTGATCCTT-GT
* * *
14938790 AGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTATA
146 ----AT-----------TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * * * *
14938855 AGATTTTGTGACTATTTGGAAAAAGTGTCCCCATTTCAAACACTTTAATGCCTATTGGCATCAAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14938920 CTTGTAAAATCTCAAATGCTCTTTAAGGGGG-GCTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * **
14938984 GCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATTATGTGTGCACA-CCCCCTACTCCCCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCC
* *
14939048 GATCATCGAAACCCCAAT---G-C---C--G---T-C--CG--G-T-----GATGGTGCCCCGAC
389 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * * *
14939090 AAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTC-AGTCTGG
454 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCTGG
* * **
14939154 TCTGATCTTAGACTGGCAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
518 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
14939219 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGGATGCGCAAGCCAGAGAT
583 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * *
14939284 CGGCCGGGTCCACCTTTTCGTGCTGCCG-TAAC--CT--T-CAA-------TCCGGTCTGATCTT
648 CGGCCGGGTCCCCCTCTGCGTGCTGCCGAT-CCTGCTACTGCAACCCTCGGTCCGGTCCGATCTT
* * * * *
14939336 AGACTAGTAATGAACTCC-TATGCCTAAGCCAACCGAGGAAACAAGCGGACGGGCGGGCGGGCTC
712 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AGACGGGCGGGCGGGCAC
* * *
14939400 TACGCCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCA
774 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * **
14939465 CATATTCATTTTTCTACATGCCAATGCCATTTTTATTTCTTGTAAATTCATACAATG
839 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14939522 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
14939587 AAAACTTTTTACGATTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
14939652 GGAGGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTAGTTAAAAACTTGAAGTGTACA
131 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
14939717 ACATTTTGTGACCATTTGAAATAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14939782 CCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
14939847 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGGGCACATCCCCCCGGCCCCTCG
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCG
* * * * * * * ** *
14939912 ATCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCCGATGATGATCCGACAATTTTGCCCCGATG
390 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* * * * * * * * * *
14939977 AAGAAAAATGCAGCACTAGCACCTGCCCAAGCCCAACATGTGCTGCCACAACGCTCGGTCAGGTT
455 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTC
* * * *
14940042 TGATCTTAGACTGGAAATGAACTCCATATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
520 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** ** * *
14940107 ACCCACGAAATGAGCGTGCAGATGCTCAATCGACCAGAGGGGCGGGATGCGTAAGCCGGGGATCG
585 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
*** * * * * * * * * *
14940172 AAAGGGTACCCCTCTACGTGCTACCGATCCTACTGCTGTAACCCTCCGTCTGGTCCAATCTTAGA
650 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * *
14940237 CTGGGAATGAACTTCGTATGCCTAAGCCAACCAACAAAACGAGTGGGCGGGCGGACGGGCGGGCA
715 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GAC--G-GG-CGGGCGGGCA
* ** * *
14940302 CTACGCTGGCCAGAGAGATAGGATGCGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGC
773 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
14940367 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATG
838 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
14940425 GTCCCTTAAGCCTTCACGTGAAGTTTGATGGCGAGACGACTCGTTTTCTATTTCTCATGGTTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
14940490 AAAACTTTTTACAGTTCGATA-TTTTTCAAATTTTTTCAGAATGAGTTTTGACCCCGAAA-TTGG
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGG
* * *
14940553 TAGACATGATCCTTGTATTTTTATTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
130 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14940618 AAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
14940683 ACCTGTAAAATCTCAAATGCACTTTCAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA-GGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
14940747 GCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCACCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCC
* * *
14940812 GATCGTCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGAC
389 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
** * * * * *
14940877 GAAGAAAAATATGACACAAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCT-G
454 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGAT-CTGG
* * * *
14940941 TCCGTTCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTGAGAATGAACTCCATATGCCTAAGT
518 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * **
14941006 CAACCCACGAAACAAGCATGCGGGCGCTTAGGCGGCCAGAGGGGCGGGATGCGCAAGGCGAAGAT
583 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** ** * * *
14941071 CGACCGGGTCCCCTTCTACGTGCTGTAGATCCTG-TTGTCGCAACCATCGGTCCAGTCTGATCTT
648 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACT-GCAACCCTCGGTCCGGTCCGATCTT
* * *
14941135 AGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGACGGGTGGGCAC
712 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GA-CGGGCGGGCGGGCAC
* * * * * * *
14941199 TACGCTGGCCAGGGAAACAGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCG
774 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
14941264 CATCTTTATATTTCTACGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATG
839 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
14941321 GTCCCTTAAGCCTTCACATAAAGTTTCAGGGAAAGATGACTCGTTTTCTATTTTTCATGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
14941386 AAAACTTTTTACGGTTCGAGATCTTTTGAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
14941451 AGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
131 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
14941516 AGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14941581 CCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
14941646 CCAATATAAGGGCCAAGTACTAGTACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCC
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCC
* * * * * *
14941711 GATCGTCGGATCCCCAATCCCGTCGATCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGAT
389 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* ** * * *
14941776 GAAAAAAAATATGGTACCAGCACATGCCCAAGCCCAGCATGTACTGCCGCAA-CC-C--TC-GGT
454 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGT
*
14941836 ----TC---G--T-----T---CT--G-AT-CTTACACTGGGAATGAACTCCGTATGCCTAAGTC
519 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
14941880 AACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCTAAAGGGGCGGGATGTC-CAAGTCGGGGTT
584 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG-CGCAAGCCGGGGAT
* * * * * * * * * *
14941944 CGGTCAGGTCCCCCTCTGCATGCTGTCGATCCTGGTGCCGCAAGCCTCGGTCTGGTCCAATCTTA
648 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGATCTTA
* * * * * * *
14942009 AATTGGGAATGAACTCCGTATGCCTAAGCGAATCGACAAAATGA-ACGGGCGGGCGGGTACTACG
713 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCACTACG
* * *
14942073 TCGGCCAGAGAGACAGGATGCCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
778 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** * *
14942138 TTCATATTTCTGTATGGCAATGCCATTTTTATAGCTTGTAAATTCATACAATG
843 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
14942191 GTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCACGATTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * *
14942256 AAAACTTTTCGCGGTTC-AGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGG
66 GAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* ** *
14942320 TAGACATGATCCTTGTATTTTTGTTGTTATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTAC
130 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
14942385 AAGATTTTGTGACCATTTGAAAAAAGTGTTCCTATTTCAAACACTTTAATCGCCACTGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
14942450 ACCTGTAAAATCTCAAATGTTCTTTAAAGGGGTGTGACTTCTCGAGGTTTGATGAGGGAGAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14942515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGAACACCCCCCGGCCCTCCG
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * * * * * *
14942580 ATCGCCGAAACCCCAATGTCGTCGGTCAGGTTCTTCGACGATGCTCTGGCGATGGTACCCCGATG
390 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* * * *
14942645 AAGAAAAATGCGACACCAGCACGTGCCCGAGCCCAGTATGTGCTACCGCAA-CC-C--TC-GGTC
455 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTC
* *
14942705 CG------G--T----CTGAA---C--A----TAGACTGGGAATGAACTCCGTATACCTAAGTCA
520 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * **
14942749 ACCCACGAACCGAGCATGCGGGCGTTCAGCCGGACAGAGGGGCGGAATGCGCAAGAAGGGGATCG
585 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * **
14942814 GCCGGGTCCCCCTCTACGTGCTACCGATCCTGC-AGCTGTAACCCTTGGTCCGGTTGGATCTTAG
650 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA-CTGCAACCCTCGGTCCGGTCCGATCTTAG
* * * *
14942878 ACTGGGAATGAACTCTGTATGCCTAAGCGAACCGACGAAATGAGCAGGCGGCCGGTCGGGCAGGC
714 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-A--C-G--GG-CGGGCGGGC
* * * * * * *
14942943 ATTATGCCTGCTAGAGAGACGGGAAGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGG
772 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** *
14943008 CACATCTTCATATTTCTGCACGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATG
837 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14943067 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTG
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * *
14943132 GAAACTTTTTGCGGTTCAAAATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCCAAGCTTGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
14943197 AGACGTGATCCTTGTATTTTTGTTTGCGTGCACAAAAAAATTCAGCTAAAAACAT-GTAGTGTAC
131 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTAC
* *
14943261 ATGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
14943326 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGGGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14943391 ACCAATATAAGGGCCAAGTACCAGCACTCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCC
* * * * *
14943456 GATTGCCGGAACCCCAATGTCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGAC
389 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * ** * ***
14943521 GAAGAAAAATGCGGCACCAGCACATTCCCGAGCCTAGCATGTGCTGGTGCAACCCTCAATCCAAT
454 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGT
* *
14943586 CTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
519 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
14943651 AACCCACGAAACGAGTGTACGGGCGCTCAGCCGGCCAAAGGCGCAGGATGCTCAAGCAGGGGATC
584 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* ** * * ** * * ** *
14943716 GACCGGGTCCCCCTCTATGTGCTGTCGATCTTGCTACCACACCCCTCGATCTAGTCTGATCTTAG
649 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGATCTTAG
*
14943781 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-CGGGCAAGCGAGCGGTCGGG
714 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAC-GG---GC--G-GG-CGGG
* * * *
14943845 CACTGCGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAA
771 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
14943910 GAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATG
836 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* ***
14943970 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGTTGGACGACTCGTTTTCTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
14944035 GAAACTTTTTACGGTTC-AGAATTTTTTAAAATTTTTTTGAGAA-GAGTTTTGGCCCCGAACTTG
66 GAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTG
* *
14944098 GTAG-CTGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGCAGTGT
129 GTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
14944162 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
193 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14944227 AAACTTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
258 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
14944292 GGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
323 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCC
* **
14944357 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTTGGCGATGGTGCCCC
386 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * **
14944422 GACGAAGAAAAATACGGCACCAGCGCATGTTCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTC
451 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TC
* * * *
14944486 CGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTA
515 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
14944551 AGTCAACCCACAAAACGAGCGTGCGGGCGCTTAG-CGGACTAGAGGGACGGGATGCGCAAGCTGG
580 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * *
14944615 GGATCAGTCGGGTCCCCCTCTGCGTGCTGCAGATCCTGCTGCTGAAACCCTCGGTCCGATCCGAT
644 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
* * *
14944680 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACG--A--AG-CGAGCGGGCGGGCAT
709 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCAC
* * *
14944740 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAAGTGGGTTTAGGCA
774 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** *
14944805 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATG
839 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
14944862 GTCCCTTAAGCCTTTACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
14944927 AAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGAAAAGCA-TTTTGGCCCCAAACTTGG
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGG
* *
14944991 TAGACGTGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
130 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
14945056 AAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
14945121 ACTTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14945186 GCTAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTACGCA
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
14945234 AGCCGTGGAT
Statistics
Matches: 9392, Mismatches: 1410, Indels: 864
0.81 0.12 0.07
Matches are distributed among these distances:
862 202 0.02
863 21 0.00
864 6 0.00
866 1 0.00
867 2 0.00
868 279 0.03
869 10 0.00
870 459 0.05
871 2 0.00
872 2 0.00
873 133 0.01
874 37 0.00
875 4 0.00
876 460 0.05
877 115 0.01
878 9 0.00
879 3 0.00
880 4 0.00
881 4 0.00
882 4 0.00
884 10 0.00
885 3 0.00
886 212 0.02
887 37 0.00
888 9 0.00
889 7 0.00
890 10 0.00
891 69 0.01
892 637 0.07
893 109 0.01
894 56 0.01
895 313 0.03
896 212 0.02
897 537 0.06
898 121 0.01
899 528 0.06
900 173 0.02
901 526 0.06
902 220 0.02
903 837 0.09
904 331 0.04
905 73 0.01
906 22 0.00
907 166 0.02
908 101 0.01
909 252 0.03
910 205 0.02
911 9 0.00
912 124 0.01
913 29 0.00
914 8 0.00
915 223 0.02
916 258 0.03
917 14 0.00
918 24 0.00
919 58 0.01
920 22 0.00
921 56 0.01
922 5 0.00
924 102 0.01
925 143 0.02
926 2 0.00
927 4 0.00
928 2 0.00
929 4 0.00
930 14 0.00
931 1 0.00
932 19 0.00
933 4 0.00
934 23 0.00
936 5 0.00
937 1 0.00
938 3 0.00
939 3 0.00
941 2 0.00
942 2 0.00
943 4 0.00
944 45 0.00
945 1 0.00
946 2 0.00
947 3 0.00
948 2 0.00
949 3 0.00
950 2 0.00
951 1 0.00
952 42 0.00
953 4 0.00
954 2 0.00
955 4 0.00
957 3 0.00
958 3 0.00
959 1 0.00
960 5 0.00
962 2 0.00
963 19 0.00
964 3 0.00
965 4 0.00
966 7 0.00
967 4 0.00
968 3 0.00
970 2 0.00
971 1 0.00
972 2 0.00
973 2 0.00
974 1 0.00
975 13 0.00
976 5 0.00
977 11 0.00
978 1 0.00
979 7 0.00
980 4 0.00
982 6 0.00
983 5 0.00
984 3 0.00
985 3 0.00
987 3 0.00
988 6 0.00
989 2 0.00
991 6 0.00
992 9 0.00
993 6 0.00
994 7 0.00
995 6 0.00
996 1 0.00
997 1 0.00
998 3 0.00
999 1 0.00
1000 1 0.00
1001 4 0.00
1002 13 0.00
1003 14 0.00
1004 4 0.00
1005 5 0.00
1007 7 0.00
1008 2 0.00
1009 3 0.00
1010 2 0.00
1011 8 0.00
1012 3 0.00
1013 6 0.00
1014 1 0.00
1015 1 0.00
1016 1 0.00
1017 14 0.00
1018 13 0.00
1019 13 0.00
1020 5 0.00
1021 6 0.00
1022 38 0.00
1023 10 0.00
1024 97 0.01
1025 90 0.01
1026 110 0.01
1027 86 0.01
1028 80 0.01
1029 90 0.01
1030 89 0.01
1031 101 0.01
1032 107 0.01
1033 119 0.01
1034 160 0.02
1035 305 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCACTACGCCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
Found at i:14935465 original size:26 final size:26
Alignment explanation
Indices: 14935427--14935479 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14935417 CTAATCCGAT
*
14935427 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTAGGAATGAACTGC-GTATG
*
14935453 CTTAGCCTAGGAATGAACTGCGTATG
1 CTTAGACTAGGAATGAACTGCGTATG
14935479 C
1 C
14935480 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTGCGTATG
Found at i:14936290 original size:19 final size:19
Alignment explanation
Indices: 14936266--14936303 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14936256 CCCGGCGAAG
14936266 GAAAAATGTGGCACCAGCA
1 GAAAAATGTGGCACCAGCA
* *
14936285 GAAAAATTTGGTACCAGCA
1 GAAAAATGTGGCACCAGCA
14936304 CATTCCTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (19 bp):
GAAAAATGTGGCACCAGCA
Found at i:14937287 original size:26 final size:26
Alignment explanation
Indices: 14937251--14937303 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14937241 CCGATCCGAT
* *
14937251 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14937277 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14937303 C
1 C
14937304 CTCATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14937826 original size:899 final size:896
Alignment explanation
Indices: 14933099--14945233 Score: 7936
Period size: 892 Copynumber: 13.4 Consensus size: 896
14933089 ACTCAGTCCA
*
14933099 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
14933164 GAAACTTTTTGCGTTTGGAGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTAGG
66 GAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
14933228 TAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTAC
130 TAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
14933293 AAGATTTTGTGACCATTTGAAAAAAGTGT--CCA-TTCAGACACTTTACTGGCTACCGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
14933355 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
14933420 GCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTTGGCCCCTC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCC-C
* * **
14933485 CGATCGTCAGAACCCCAATGTTGCCGGTCAGGTTCT-C--CG--G-T-GA-G--GGTGCCCCGAT
388 CGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGACGATGGTGCCCCG-T
* * *
14933540 GAA-AAAAATATGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC-AGTCTGA
452 GAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCTGA
*
14933603 TCCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATACTTAGAC
516 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG--TA--T-G-C
* * *
14933668 TGGGAATGAACTCCATATGCCTAAGTCTACCTACGAAATGAGCGTGCGGGCGCGCAGCCGGCCAG
575 ----------CT-C--A-GTC-AA--C--CC-ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * * *
14933733 AGGGCCGGGATGTGTAAGCTGGGGATCGGCCGGGTCCCCCTCTTCATGCTGCTGATCCTACTACT
620 AGGGGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACT
* * * * ** *
14933798 GCAACCCTCAGTTTGGTCCGATCTTCGACAGGGAATGAACTCTATATGCCTAAGCCAATCGACGA
685 GCAACCCTCAGTTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
14933863 AACGAGCG-GACGGGCGGACGGGCACTACGTCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATC
750 AACGAGCGAG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * * * * *
14933927 GATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTCTAGA
814 GATAGGGTGGTAGGTGGGTTTAGGCACATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGC
*
14933991 TTTTAAATTCATACAATG
879 TTGTAAATTCATACAATG
* *
14934009 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
14934074 AAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCGAACATGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
14934139 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
131 AGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
14934204 AGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG-AAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
14934268 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* **
14934333 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACA-CCCCCGGCCCTTCGA
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * ** ** *
14934397 T-GATCGAAACCCCAATGCCAG-CAGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGAC
391 TCGA-CGGAACCCCAATGCC-GCCGGTCAGGTTCTCCGACGATGCT-CGACGATGGTGCCCCG-T
* * * * *
14934460 GAAGAAAAATGCA-GCACCAGCAGATGCCCGAGCCTAGCATGTGCTGCCCCAACCCTCGATCTGG
452 GAAGAAAAAT-AAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGA
* * * *
14934524 TCCGATCTTAGACTGTGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGT
516 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGT
* * * *
14934589 CAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCTAGAGAGGCGGGATGCGCAAGCCGGGGAT
581 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
** ** * * * * * ** **
14934654 CGG-TCGGGTCCTTCTCTGTGTGCTACCAATCCTGCTACTGCAACCCT-TGGTCCAGTCCAATCT
646 CGGCT-GGGTCCCCCTCTGCATGTTGCCGATCCTGCTACTGCAACCCTCAGTTTGA-TCTGATCT
* * *
14934717 TAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGA---A-TGGGCGTGCGGGCA
709 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
14934778 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
774 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * * *
14934843 ACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATG
839 ACATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14934901 GTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
14934966 GAAACTTTTTACGGTTCAAGATTTTTCAAAATTTTTTCAGACA-GAGTTTTTAGCCCCAAATTTG
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA-AGGAG-TTTTGGCCCCAAACTTG
* *
14935030 GCT-GACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGT
129 G-TAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
14935094 ACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAG
193 ACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
* *
14935159 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGGTTGATGAGGGATAG
257 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14935224 GGGGCCAATATAAGGGCCAAGTACCGGAACCCATCGCACATCATGTGCGCACACCCCCCGGCTCC
322 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CC
*
14935289 CCCGATCGACGGAACCCCAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGACGATGGTGCCCC
386 CCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CGACGATGGTGCCCC
** * *
14935354 GGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
450 -GTGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCT
* * * * *
14935419 AATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGCCTAGGAATGAACTGCGTATGCCTCA
514 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCA
* * * * *
14935484 GTCAACCCATGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGCGCAAGCTGGGG
579 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGG
* * * * * * * *
14935549 ATCAGCCGGGTCCCCCTCTGCGTGTTGTCGATCTTGCTACCGCAACCCTCGGTCTGATCTGATCT
644 ATCGGCTGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACTGCAACCCTCAGTTTGATCTGATCT
14935614 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGTGCGGGCC
709 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGC--G-G-GC--G--
* * *
14935679 GGCGGGCACTACGCCGGTCAGAGAGACGGGATGTGCAAGCCGTGGATCGATTGGGTGGTAGGTGG
766 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
14935744 GTTTAGGTACATCTCCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATACATACAAT
831 GTTTAGGCACATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
14935809 G
896 G
* * *
14935810 G-CCCATTAGGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
1 GTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
**
14935874 TGAAACTTTTTACCATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
65 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
14935939 TAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAACAATTCAGCTAAAAGCTTGAAGTGTAC
130 TAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
14936004 AAGATTTTGTGACTATTTGAAAAAAGCGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
14936069 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
14936134 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCC-GACCCCCG
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * * ** ** *
14936198 ATGGTCGGAACCCCAATGCCGACGGTTAGGTTCTCCGGTGATGCTCTGGTGATGGTGCCCCGGCG
390 ATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-GACGATGGTGCCCC-GTG
* * * * * *
14936263 AAGGAAAAATGTGGCACCAGCAGAAAAATTTGGTACCAGCACATTCCTGAGCCCAGGATATGCTA
453 AA-GAAAAA--T--------------AA---GGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * * *
14936328 CCGTAACCCTTGGTCCGGTCTGATCCT-GCACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
498 CCGCAACCCTCGATCTGATCCGATCTTAG-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* *
14936392 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
562 GAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *
14936457 GGTTGC-TCAAGCCGGGCATCGG-TGGGTCCCCCTCT--ATGTGCTGCCAATCCTGCTAGTGCAA
627 GGATGCGT-AAGCCGGGGATCGGCTGGGTCCCCCTCTGCATGT--TGCCGATCCTGCTACTGCAA
* * * *
14936518 CCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCGATGAAACG
689 CCCTCAGTTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*
14936583 AGCGAGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAG
754 AGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
14936647 GGTGGTAGGTGGGTTTAGGCACATCTTCATT-TTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
819 GGTGGTAGGTGGGTTTAGGCACATC-TCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
14936711 AAATTCATACAATG
883 AAATTCATACAATG
* * * *
14936725 GTCCCATAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
14936790 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAATGAGTTTTTAGCCCCAAACTTGG
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGG
* *
14936855 TAGACGTCCTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTAC
130 TAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
14936920 AAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
* *
14936985 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGGTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14937050 GCCAATATATGGGCCAAGTACCAGCACCCATCGTAAATCATGTGCGCACACCCCCCCGGCCCTCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC-CC
* *
14937115 CGATCGACGGAACCTCAATGTCGCCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCAG
388 CGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CGACGATGGTGCCCC-G
* * *
14937180 TGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCTGCAACCCTCGATCCGA
451 TGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGA
* * *
14937245 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTCCGTATGCCTCATT
516 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGT
* * * * *
14937310 CAACCCACGAAACGAACATGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCAGGGAT
581 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
** * * *
14937375 CGGCTGGGTCCCTTTCTGCATGTTGTCGATCCTGCTGCTGCAACCCTCAATTTGATCTGATCTTA
646 CGGCTGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACTGCAACCCTCAGTTTGATCTGATCTTA
* *
14937440 GACTGTGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGAGCGGGCGGGCGGGCACT
711 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCACT
** * * *
14937505 ACTTCGGCCAAAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
776 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
14937570 ATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
841 ATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
14937626 GCCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCATTTTCTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
14937691 GAAACTTTTTACTGTTCGAGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
14937755 AGACGTCATCCTTGTCTTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACA
131 AGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14937820 AGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
* *
14937885 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
14937950 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
** * * * * * *
14938015 ATCGTTGGAACCACATTACCGCCTGTCAGG-T-T------AT-C-CGATGATGGTGCCCCGACGA
390 ATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGACGATGGTGCCCCG-TGA
* * * * *
14938070 A-AAAAATTACGGCACCAGCACAT-CCTCG-GTCCGGTCCGATCTTAGACTG--GGAA---T-GA
454 AGAAAAA-TAAGGCACCAGCACATGCC-CGAGCCCAG--C-AT-GT-G-CTGCCGCAACCCTCG-
* * ** ** * * * * * * ** ***
14938126 ACTCTGTATGCCTAAGTC-AACCCACGAAACGAACGTGCGTGTGCTCAGTC-GGCCA-GAGGGGC
510 A-TCTG-AT-CC-GA-TCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGAATGA-ACTC
* * * * * * * * * * ***
14938188 GGGATG---C-G-CAAGCCGA-GGATCG-G-TTG-GGTCCCCTCTGCGTGCTGCCA-ATCTTACT
568 CGTATGCCTCAGTCAA-CCCACGAAACGAGCGTGCGG-GCGCTCAGC---CGGCCAGA----GGG
* * ** * ** ** * ** * * ** *
14938243 GCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCCTATGCCT-AAGCCAATCG
624 GCGGGATGCGTAAG-CCGG--GGATC---GGCTGGG--T---CCCCCTCTGCATGTTGCCGATC-
* * * ** *** * ***
14938307 ATGAAAAGAGTAGGTG-GGCGGGCGGGCGGGCA-CT-ATACTTAGACTGGGAATGAACTCCGTAT
677 CT-----G-CTA-CTGCAACCCTC-AGTTTG-ATCTGAT-CTTAGACTGGGAATGAACTCCGTAT
* * * *** * * * * * ** ** *
14938369 -ACTTAGAC-TGGGAATGAACTCCGTATACTTAGACTGGGAATGAAC-TCCA-TATGCCTAAGTC
732 GCCTAAGCCAACCG-ACGAA--ACG-A-GC-GAG-C-GGG--CGGGCGGGCACTACGCC---G--
* * * * * *** * *
14938430 TACCTACGAAATGAGCGTGCG-GGCGCGCAGCCG-GCCAGA-GGGCCGGGATGTGTAAGCTGGGG
782 -GCC-A-GAGA-GA-CG-G-GATGCGC-AAGCCGTG---GATCGATAGGG-TG-GT-AGGTGGGT
* * * * * * * ** *
14938492 ATCGGC-CGGGTCCCCCT-CTTCATGCTGCTGATCCTACTACTGCAACCCTCAGTT-TGG-TCCG
833 TTAGGCAC--ATCTCCTTATTTC-TGC-G-TG--CC-A--A-TG---CCAT-TTTTATGGCT-TG
** * *
14938553 -ATCTTCGACAGGGAATG
882 TAAATTC-ATA--CAATG
** * * * ** * * ** **** ******
14938570 AACTCTATATGCC-T-AAGCCAA---TCGA-CGAAACGAGCGGACGGGCGGACGGGCACT-ACG-
1 GTCCCT-TAAGCCTTCACGTGAAGTTTC-ATGGCAA-GA-C-GACTCGTTTTCTATTTTTCACGA
***** *** * *** ** ** **** * * *
14938627 TCGGCCAAA---GAGACGGGATGCGCA-AGCCGTGGATCGATAGGGT-GGTAGGTGGGTTTAGGC
61 TTTTTGAAACTTTTTAC-GG-TTCG-AGA-TTTTTTA-AAATTTTTTCGG-AAG-GAGTTTTGGC
** * * * * *
14938687 ACATCTTCAAA-TTTCTATG-TGCCAATGCC----ATTTTT-ATGGCTTGCA-AATTCATACAAT
119 -C--C--CAAACTTGGTA-GACGTC-AT-CCTTGTATTTTTGTTGGCATGCACAA---A-AAAAT
* ** * * * * * * * *
14938744 GGTC--CTTGAAGCCTTC-ACGTG-A-AGGGGTTTTG-GCCCCAAACTTGGTAGACA-TGAT--C
172 --TCAGC-TAAAAAC-TCGAAGTGTACA-AGATTTTGTG-ACC--A-TTTGAAAAAAGTG-TCCC
* ** * * ** * * * * * *
14938800 C-TTGT--A-TTTTTATTGGC-A-TGCACAAAAAAATTCAGTTAAAAACTCGAA-G-TGTATAAG
227 CATTTTAGACACTTTAATGGCTACTG-GC-AGCAAA-CCTG-TAAAATCTCAAATGCTCTTTAAG
**** * * * ** * * ***
14938857 ATTTTGTGA---CT--A--TTTG--GA--AAAAGTGTCCCCAT-T-----TCAA--A-CA-CTTT
288 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* ** ** ****** * ** ** *** * *
14938901 AAT-GC-C-T-AT-TG-GCATCA-AACTTGTAAAATC--TCAAATGCTCTTTAA-G--G-GGGGC
353 CATCGCACATCATGTGCGCA-CACCCCCCGGCCCCCCGATCGACGGAACCCCAATGCCGCCGGTC
* * * * * *** ** * * * * **
14938953 TGAGTTCT-C-A--AGGTTTGATGA-GG-G-ATAG-GGGGCCAATATAAGGGC-CAAGTACCGGC
417 AG-GTTCTCCGACGATGCTCGACGATGGTGCCCCGTGAAG-AAAAATAA-GGCACCAGCACATGC
* * * * * * * *** * * *** *
14939009 ACCCATCGCA-CATTATG-TG-TGCACACCCCCTA-CTCCCCCGATCATCGAAAC-CCCAATG-C
479 -CCGAGCCCAGCA-TGTGCTGCCGCA-ACCCTCGATCTGATCCGATC-T-TAGACTGGGAATGAA
* * * ** * **** * * ** *
14939068 CGTCCGGTGATG-GT-GCCCCGACAAAGAAAAATGCA-GCAC-CAG-CACATGCC-CGAGCCTAG
539 C-TCC-GT-ATGCTTAG-ACTGGGAATGAACTCCGTATGC-CTCAGTCA-A-CCCACGAAACGAG
* * * ** * * * * ** * ** *
14939127 CATGTGCTGTCG-T-AACC--CTCAGTCTGGTC-TGAT-C-TTAGACTGGCAAT-GAACTTTGTA
597 C--GTGCGGGCGCTCAGCCGGC-CAG-AGGGGCGGGATGCGTAAG-CCGGGGATCG-GCTGGGTC
** * * * * * * *** * *
14939184 TGCTTAGACTGGGAATGAACT-CCG-T-ATGCCTA-AGTCAACCCAC-GAAACGAGCGTGCGGGC
656 CCCCT---CT--GCATG--TTGCCGATCCTG-CTACTG-CAACCCTCAG-TTTGA---T-C-TGA
* * * ** *** * * ** * * * ***
14939244 GCTCAGTC-GGCCAT-AGGGGCAGGATGCGC-AAGCCAGA--GATCG-GCCGGGTCCACCTTTTC
706 TCTTAGACTGGGAATGA-ACTCCGTATGC-CTAAGCCA-ACCGA-CGAAACGAG-CGAGC-GGGC
* ** ** * * * ** * * * * *
14939303 GTGCTGCCGTAACCTTCAATCCGGTCTGATCTTAGACTAGTAATGAACTCCTATGCC-T-AAGCC
765 G-G--GCGGGCA-C-T-ACGCCGGCCAGA---GAGAC--GGGATG--C-GC-AAGCCGTGGATCG
**** * * **** *** *** * ** ** ** ***
14939366 A-ACCGAGGAAACAAGCGGACGGGCGGGC-GGGCT-C-TACGCCGGCCAGAGAGATGGGATGCGT
815 ATA--G-GGTGGTAGGTGG--GTTTAGGCACATCTCCTTATTTCTGCGTGCCA-ATGCCATTTTT
* * * * *** ***
14939427 AAGCCGTGGATCAATAGGGTGGTA-G
874 ATGGC-TTG-TAAAT-TCATACAATG
*** * * * * ** * * * ** *
14939452 GTGGGTTTAGGCACAT-A-TTCATTTTTCTACATGCCAATG-CCATTTTTATTTCT-TGTAAATT
1 GT-CCCTTAAGC-CTTCACGTGA-AGTT-T-CATGGCAA-GACGACTCGT-TTTCTAT-T--TTT
* * * * * * **
14939513 CATACAATGGTCCCTT-AAGC-CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-CTA-TT
56 C--ACGAT--T--TTTGAAACTTTTTAC--G--G--T--T--C--GA-GA-T-TTTTTAAAATTT
* * ** * ***
14939574 TTTC---ATGA-TTTT----CAAAACTT--TTTACG--AT--TTGAGATTTTT-TAAAAT-TTTT
100 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTG-TATTTTTGT----TGGCAT
* ** ** ** ** ** * * * * **
14939623 TCGGAAGGAGTTTTGGCCCCAAACCTGGTGGAGGTGATCCTTGTATTTTTGTTGGCATGCAAAAA
160 GCACAAAAAAATTCAG-CTAAAAAC---TCGAAGTG-TACAAG-A-TTTTG-T-G-A--C-----
* ** * *
14939688 AAAATTTAGTTAAAAACTTGAAGTGTACAACATTTTGTGAC-CATTTGAAATAAGTG-T-C-CGC
208 --CATTT-G---AAAA----AAGTGT-CCCCATTTT-AGACAC-TTT--AAT--G-GCTACTGGC
* * * * * * * ** ******* ** * *
14939749 ATTTCAGACACTTTAATGGCTACTGGTAGCAAA-CCTGTAAAATCTCAAATGCTTTTTAAGGGGG
255 A--GCAAAC-CTGTAA-----AAT-CT--CAAATGCTCTTTAAGGGGGTGTGAGTTCT----C--
*
14939813 TGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
303 -----------GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * *
14939878 GCACATCACGTGGGCACATCCCCCCGGCCCCTCGATCGTCGGAACCCCAATGTCGTCGATCAGGT
357 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGT
* * * ** * * * *
14939943 TCTCCGATGATGATCCGACAATTTTGCCCCGATGAAGAAAAATGCA-GCACTAGCACCTGCCCAA
421 TCTCCGACGATGCT-CGACGATGGTGCCCCG-TGAAGAAAAAT-AAGGCACCAGCACATGCCCGA
* * * * * * ** * *
14940007 GCCCAACATGTGCTGCCACAACGCTCGGTCAGGTTTGATCTTAGACTGGAAATGAACTCCATATG
483 GCCCAGCATGTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * ** **
14940072 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGATGCTCAAT
548 CTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *** * * * * *
14940137 CGACCAGAGGGGCGGGATGCGTAAGCCGGGGATCGAAAGGGTACCCCTCTACGTGCTACCGATCC
613 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGCATGTTGCCGATCC
* * * * * * ** *
14940202 TACTGCTGTAACCCTCCGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
678 TGCTACTGCAACCCTCAGTTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** *
14940267 CCAACAAAACGAGTGGGCGGGCGGACGGGCGGGCACTACGCTGGCCAGAGAGATAGGATGCGTAA
743 CCGACGAAACGA----GCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
14940332 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
804 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCTTATTTCTGCGTGCCAATGCCA
*
14940397 TTTTTATGGCCTGTAAATTCATACAATG
869 TTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
14940425 GTCCCTTAAGCCTTCACGTGAAGTTTGATGGCGAGACGACTCGTTTTCTATTTCTCATGGTTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
14940490 AAAACTTTTTACAGTTCGATA-TTTTTCAAATTTTTTCAGAATGAGTTTTGACCCCGAAA-TTGG
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGG
* * * *
14940553 TAGACATGATCCTTGTATTTTTATTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
130 TAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
14940618 AAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
* * *
14940683 ACCTGTAAAATCTCAAATGCACTTTCAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA-GGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
14940747 GCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCACCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCC
* * * * *
14940812 GATCGTCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGAC
389 GATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC-TCGACGATGGTGCCCCG-T
* * * * * *
14940877 GAAGAAAAATATGACACAAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCTG-
452 GAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGAT-CTGA
* * * * *
14940941 TCCGTTCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTGAGAATGAACTCCATATGCCTAAGT
516 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGT
* * * * * * **
14941006 CAACCCACGAAACAAGCATGCGGGCGCTTAGGCGGCCAGAGGGGCGGGATGCGCAAGGCGAAGAT
581 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
* * * * * * ** ** * * **
14941071 CGACCGGGTCCCCTTCTACGTGCTGTAGATCCTG-TTGTCGCAACCATC-GGTCCAGTCTGATCT
646 CGGCTGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACT-GCAACCCTCAGTTTGA-TCTGATCT
* * *
14941134 TAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGACGGGTGGGCA
709 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* * * * * *
14941198 CTACGCTGGCCAGGGAAACAGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
774 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
14941263 GCATCT-TTATATTTCTACGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATG
839 ACATCTCCT-TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
14941321 GTCCCTTAAGCCTTCACATAAAGTTTCAGGGAAAGATGACTCGTTTTCTATTTTTCATGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
14941386 AAAACTTTTTACGGTTCGAGATCTTTTGAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
14941451 AGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
131 AGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14941516 AGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
* *
14941581 CCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
14941646 CCAATATAAGGGCCAAGTACTAGTACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCC
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCC
* * * * * *
14941711 GATCGTCGGATCCCCAATCCCGTCGATCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGAT
389 GATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-GACGATGGTGCCCCG-T
* * * * *
14941776 GAAAAAAAATATGGTACCAGCACATGCCCAAGCCCAGCATGTACTGCCGCAACCCTCG----G-T
452 GAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGAT
* *
14941836 ----TC---G--T-----T---CT--G-AT-CTTACACTGGGAATGAACTCCGTATGCCTAAGTC
517 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTC
* * * * * * *
14941880 AACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCTAAAGGGGCGGGATGTC-CAAGTCGGGGTT
582 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG-CGTAAGCCGGGGAT
* * * * * * * * * * **
14941944 CGG-TCAGGTCCCCCTCTGCATGCTGTCGATCCTGGTGCCGCAAGCCTCGGTCTGGTCCAATCTT
646 CGGCT-GGGTCCCCCTCTGCATGTTGCCGATCCTGCTACTGCAACCCTCAGTTTGATCTGATCTT
* * * * * * *
14942008 AAATTGGGAATGAACTCCGTATGCCTAAGCGAATCGAC-AAA--A-TGAACGGGCGGGCGGGTAC
710 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCAC
* * *
14942069 TACGTCGGCCAGAGAGACAGGATGCCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
775 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * ** * *
14942134 CATCTTCATATTTCTGTATGGCAATGCCATTTTTATAGCTTGTAAATTCATACAATG
840 CATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
14942191 GTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCACGATTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * *
14942256 AAAACTTTTCGCGGTTC-AGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGG
66 GAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * ** *
14942320 TAGACATGATCCTTGTATTTTTGTTGTTATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTAC
130 TAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * * *
14942385 AAGATTTTGTGACCATTTGAAAAAAGTGTTCCTATTTCAAACACTTTAATCGCCACTGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
* * * *
14942450 ACCTGTAAAATCTCAAATGTTCTTTAAAGGGGTGTGACTTCTCGAGGTTTGATGAGGGAGAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14942515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGAACACCCCCCGGCCCTCCG
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * * * * *
14942580 ATCGCCGAAACCCCAATGTCGTCGGTCAGGTTCTTCGACGATGCTCTGGCGATGGTACCCCGATG
390 ATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-GACGATGGTGCCCCG-TG
** * * * *
14942645 AAGAAAAATGCGACACCAGCACGTGCCCGAGCCCAGTATGTGCTACCGCAACCCTCG----G-TC
453 AAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGATC
* * *
14942705 CG------G--T----CTGAA---C--A----TAGACTGGGAATGAACTCCGTATACCTAAGTCA
518 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCA
* * * * * * **
14942749 ACCCACGAACCGAGCATGCGGGCGTTCAGCCGGACAGAGGGGCGGAATGCGCAAGAAGGGGATCG
583 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCG
* * * * * * ** ** *
14942814 GCCGGGTCCCCCTCTACGTGCTACCGATCCTGC-AGCTGTAACCCTTGGTCCGGT-TGGATCTTA
648 GCTGGGTCCCCCTCTGCATGTTGCCGATCCTGCTA-CTGCAACCCTCAGTTTGATCT-GATCTTA
* * * *
14942877 GACTGGGAATGAACTCTGTATGCCTAAGCGAACCGACGAAATGAGC-AGGCGGCCGGTCGGGCAG
711 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA-GC-G--GG-CGGGCGG
* * * * * * *
14942941 GCATTATGCCTGCTAGAGAGACGGGAAGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTA
771 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * ** *
14943006 GGCACATCTTCATATTTCTGCACGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATG
836 GGCACATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
14943067 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTG
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * *
14943132 GAAACTTTTTGCGGTTCAAAATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCCAAGCTTGGT
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
14943197 AGACGTGATCCTTGTATTTTTGTTTGCGTGCACAAAAAAATTCAGCTAAAAACAT-GTAGTGTAC
131 AGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTAC
* * *
14943261 ATGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
* * *
14943326 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGGGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14943391 ACCAATATAAGGGCCAAGTACCAGCACTCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCC
* * * * * * *
14943456 GATTGCCGGAACCCCAATGTCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGAC
389 GATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CGACGATGGTGCCCCG-T
** * * ** * **
14943521 GAAGAAAAATGCGGCACCAGCACATTCCCGAGCCTAGCATGTGCTGGTGCAACCCTCAATCCAAT
452 GAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGAT
* * *
14943586 CTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
517 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTC
* * * * * *
14943651 AACCCACGAAACGAGTGTACGGGCGCTCAGCCGGCCAAAGGCGCAGGATGC-TCAAGCAGGGGAT
582 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGT-AAGCCGGGGAT
* * * * ** * *
14943715 CGACCGGGTCCCCCTCT--ATGTGCTGTCGATCTTGCTACCACACCCCTC-GATCT-AGTCTGAT
646 CGGCTGGGTCCCCCTCTGCATGT--TGCCGATCCTGCTACTGCAACCCTCAG-TTTGA-TCTGAT
* * *
14943776 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAAGCGAGCGGT
707 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--AGCGGGCGGG
* * *
14943841 CGGGCACTGCGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGT
768 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * * *
14943906 TTAAGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATG
833 TTAGGCACATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* ***
14943970 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGTTGGACGACTCGTTTTCTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
14944035 GAAACTTTTTACGGTTC-AGAATTTTTTAAAATTTTTTTGAGAA-GAGTTTTGGCCCCGAACTTG
66 GAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTG
* * *
14944098 GTAG-CTGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGCAGTGT
129 GTAGAC-GTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
14944162 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
193 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
* *
14944227 AAACTTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
258 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
14944292 GGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
323 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCC
* * * *
14944357 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTTGGCGATGGTGCCCC
386 CCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC-TCGACGATGGTGCCCC
* * * **
14944422 GACGAAGAAAAATACGGCACCAGCGCATGTTCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTC
450 G-TGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TC
* * * * * *
14944486 CGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTA
513 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTC
* * * * * *
14944551 AGTCAACCCACAAAACGAGCGTGCGGGCGCTTAG-CGGACTAGAGGGACGGGATGCGCAAGCTGG
578 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CCAGAGGGGCGGGATGCGTAAGCCGG
* * * * * * * ** *
14944615 GGATCAG-TCGGGTCCCCCTCTGCGTGCTGCAGATCCTGCTGCTGAAACCCTCGGTCCGATCCGA
642 GGATCGGCT-GGGTCCCCCTCTGCATGTTGCCGATCCTGCTACTGCAACCCTCAGTTTGATCTGA
*
14944679 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C--C--AACGA---AGCGAGCGGGCGG
706 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGG
* * * *
14944736 GCATTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAAGTGGGTTTA
771 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * ** *
14944801 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATG
836 GGCACATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
14944862 GTCCCTTAAGCCTTTACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
14944927 AAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGAAAAGCA-TTTTGGCCCCAAACTTGG
66 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGG
* * *
14944991 TAGACGTGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
130 TAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14945056 AAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
* *
14945121 ACTTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14945186 GCTAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTACGCA
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
14945234 AGCCGTGGAT
Statistics
Matches: 8809, Mismatches: 1743, Indels: 1364
0.74 0.15 0.11
Matches are distributed among these distances:
867 1 0.00
868 272 0.03
869 13 0.00
870 457 0.05
871 4 0.00
872 1 0.00
873 128 0.01
874 33 0.00
875 3 0.00
876 459 0.05
877 117 0.01
878 1 0.00
880 1 0.00
881 1 0.00
882 10 0.00
883 8 0.00
884 11 0.00
885 4 0.00
886 22 0.00
887 48 0.01
888 8 0.00
889 14 0.00
890 19 0.00
891 85 0.01
892 655 0.07
893 112 0.01
894 66 0.01
895 258 0.03
896 236 0.03
897 531 0.06
898 112 0.01
899 525 0.06
900 184 0.02
901 540 0.06
902 39 0.00
903 635 0.07
904 317 0.04
905 70 0.01
906 16 0.00
907 181 0.02
908 138 0.02
909 263 0.03
910 217 0.02
911 22 0.00
912 130 0.01
913 32 0.00
914 20 0.00
915 238 0.03
916 262 0.03
917 13 0.00
918 26 0.00
919 77 0.01
920 22 0.00
921 105 0.01
922 9 0.00
923 7 0.00
924 100 0.01
925 166 0.02
926 17 0.00
927 14 0.00
928 9 0.00
929 8 0.00
930 13 0.00
931 15 0.00
932 9 0.00
933 8 0.00
934 11 0.00
935 11 0.00
936 3 0.00
937 4 0.00
938 8 0.00
939 3 0.00
940 10 0.00
941 19 0.00
942 18 0.00
943 15 0.00
944 20 0.00
945 37 0.00
946 8 0.00
947 17 0.00
948 26 0.00
949 23 0.00
950 10 0.00
951 10 0.00
952 5 0.00
953 10 0.00
954 1 0.00
955 4 0.00
956 6 0.00
957 5 0.00
958 3 0.00
959 14 0.00
960 9 0.00
961 5 0.00
962 9 0.00
963 17 0.00
964 1 0.00
965 2 0.00
967 2 0.00
969 10 0.00
970 10 0.00
971 4 0.00
972 12 0.00
973 16 0.00
974 5 0.00
975 21 0.00
976 9 0.00
977 5 0.00
978 5 0.00
979 6 0.00
980 4 0.00
981 3 0.00
982 6 0.00
983 1 0.00
984 7 0.00
985 7 0.00
986 12 0.00
987 22 0.00
988 5 0.00
989 6 0.00
990 8 0.00
991 14 0.00
992 14 0.00
993 32 0.00
994 46 0.01
995 19 0.00
996 13 0.00
997 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
TCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGACGATGGTGCCCCGTGAAG
AAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGATCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCT
GGGTCCCCCTCTGCATGTTGCCGATCCTGCTACTGCAACCCTCAGTTTGATCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTC
CTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
Found at i:14938376 original size:26 final size:26
Alignment explanation
Indices: 14938340--14938416 Score: 154
Period size: 26 Copynumber: 3.0 Consensus size: 26
14938330 GGGCGGGCAC
14938340 TATACTTAGACTGGGAATGAACTCCG
1 TATACTTAGACTGGGAATGAACTCCG
14938366 TATACTTAGACTGGGAATGAACTCCG
1 TATACTTAGACTGGGAATGAACTCCG
14938392 TATACTTAGACTGGGAATGAACTCC
1 TATACTTAGACTGGGAATGAACTCC
14938417 ATATGCCTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (26 bp):
TATACTTAGACTGGGAATGAACTCCG
Found at i:14939210 original size:26 final size:26
Alignment explanation
Indices: 14939160--14939212 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14939150 CTGGTCTGAT
**
14939160 CTTAGACTGGCAATGAACTTTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
14939186 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14939212 C
1 C
14939213 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14940086 original size:26 final size:26
Alignment explanation
Indices: 14940047--14940097 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14940037 AGGTTTGATC
14940047 TTAGACTGGAAATGAACTCCATATGT
1 TTAGACTGGAAATGAACTCCATATGT
* *
14940073 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGAAATGAACTCCATATG
14940098 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCATATGT
Found at i:14943337 original size:876 final size:878
Alignment explanation
Indices: 14933099--14938026 Score: 4939
Period size: 899 Copynumber: 5.5 Consensus size: 878
14933089 ACTCAGTCCA
* *
14933099 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * *
14933164 GAAACTTTTTGCGTTTGGAGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTAGG
66 AAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* *
14933228 TAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTAC
130 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14933293 AAGATTTTGTGACCATTTGAAAAAAGTGT--CCA-TTCAGACACTTTACTGGCTACCGGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14933355 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* **
14933420 GCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTTGGCCCCTC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-C
* ** * *
14933485 CGATCGTCAGAACCCCAATGTTGCCGGTCAGGTTCT-C--CG--G---T---GAGGGTGCCCCGA
389 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGA
* * * * *
14933539 TGAA-AAAAATATGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGA
454 CGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G---G-
* * *
14933603 TCC-GATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATACTTAGA
514 TCCTG--GTT--AC------TGAA--CC----A--TAGACTGGGAATGAACTCCGTATGCCTA-A
* * ** * * *** * * * *
14933667 CTGGGAATGAACTCCA-TATGCCTAAGTC-TACCTACGAAATGAGCGTGCGGGCGCGCAGCCGGC
560 ----G--TCAAC-CCACGA-AAC-GAG-CGTGCGGGCG--CTCAGC---CGGAC-AG-A------
* * * * * * *
14933730 CAGAGGGCCGGGATGTGTAAGCTGGGGATCGGCCGGGTCCCCCTCTTCATGCTGCTGATCCTACT
602 --G-GGG-CGGGATGCGCAAGCAGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
* * ** * * * ** *
14933795 ACTGCAACCCTCAGTTTGGTCCGATCTTCGACAGGGAATGAACTCTATATGCCTAAGCCAATCGA
663 GCTGCAACCCTCGGTCCGGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** *
14933860 CGAAACGAGC-GGAC-G-GGCGGACGGGCACTACGTCGGCCAGAGAGATGGGATGCGTAAGCCGT
727 CGAAACGAGCAGG-CGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* *
14933922 GGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTT
791 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * * *
14933986 CTAGATTTTAAATTCATACAATG
856 ATGGCTTGTAAATTCATACAATG
*
14934009 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * * *
14934074 AAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCGAACATGGT
66 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
*
14934139 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
131 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14934204 AGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG-AAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
14934268 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* **
14934333 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACA--CCCCCGGCCCTTCG
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * ** * *
14934396 AT-GATCGAAACCCCAATGCCAG-CAGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGA
391 ATCG-TCGGAACCCCAATGCC-GTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGA
* * * *
14934459 CGAAGAAAAATGC-AGCACCAGCAGATGCCCGAGCCTAGCATGTGCTGCCCCAACCCTCGATCTG
454 CGAAGAAAAATACGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-G
* * *
14934523 GTCCGATCTTAGACTGTGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATCCCTAAG
513 GT-C---C-T-G---GTTACTGAA--CC--A----TAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
14934588 TCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGG-CTAGAGAGGCGGGATGCGCAAGCCGGGG
561 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGAC-AGAGGGGCGGGATGCGCAAGCAGGGG
* ** ** * * * * * **
14934652 ATCGGTCGGGTCCTTCTCTGTGTGCTACCAATCCTGCTACTGCAACCCTTGGTCCAGTCCAATCT
625 ATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGT-TGATCT
* * *
14934717 TAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGA--A---TG-GGCGTGCGGG
689 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGCGGCGGGCGGG
*
14934776 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
754 CACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *** *
14934841 GCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATG
819 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
14934901 GTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * *
14934966 GAAACTTTTTACGGTTCAAGATTTTTCAAAATTTTTTCAGACA-GAGTTTTTAGCCCCAAATTTG
66 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAG-TTTTGGCCCCAAACTTG
* * *
14935030 GCT-GACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGT
129 G-TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
14935094 ACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAG
193 ACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14935159 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGGTTGATGAGGGATAG
257 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14935224 GGGGCCAATATAAGGGCCAAGTACCGGAACCCATCGCACATCATGTGCGCACA-CCCCCCGGCTC
322 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-C
* * * * *
14935288 CCCCGATCGACGGAACCCCAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGACGATGGTGCCC
386 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCC
** * * *
14935353 CGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
451 CGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * * *
14935418 TAATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGCCTAGGAATGAACTGCGTATGCCTC
516 ----CTG--GTT--AC------TGAAC-C---A----TAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
14935483 AGTCAACCCATGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGCGCAAGCTGGG
559 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGACAGAGGGGCGGGATGCGCAAGCAGGG
* * * * * * * * *
14935548 GATCAGCCGGGTCCCCCTCTGCGTGTTGTCGATCTTGCTACCGCAACCCTCGGTCTGATCTGATC
624 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGT-TGATC
14935613 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGTGCGGGC
688 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-A---GGCG-GC-GGC
* * * * *
14935678 CGGCGGGCACTACGCCGGTCAGAGAGACGGGATGTGCAAGCCGTGGATCGATTGGGTGGTAGGTG
747 GGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * *
14935743 GGTTTAGGTACATCTCCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATACATACAA
812 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
14935808 TG
877 TG
* * *
14935810 G-CCCATTAGGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
1 GTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** ** *
14935874 TGAAACTTTTTACCATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
65 CAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* * * *
14935939 TAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAACAATTCAGCTAAAAGCTTGAAGTGTAC
130 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
14936004 AAGATTTTGTGACTATTTGAAAAAAGCGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAA
195 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14936069 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
260 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
14936134 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCC-GACCCCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * ** * *
14936197 GATGGTCGGAACCCCAATGCCGACGGTTAGGTTCTCCGGTGATGCTCTGGTGATGGTGCCCCGGC
390 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGAC
* * * * *
14936262 GAAGGAAAAATGTGGCACCAGCAGAAAAATTTGGTACCAGCACATTCCTGAGCCCAGGATATGCT
455 GAA-GAAAAA--T------A-C-G----A-----CACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
14936327 ACCGTAACCCTTGGTCCGGTCTGATCCTGCACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
500 GCCGCAACCCTCGGT-C---CTGGT--T--AC------TGAA--CC--A----TAGACTGGGAAT
* *
14936392 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
543 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGACAGAGGGGCG
* * * * * * *
14936457 GGTTGCTCAAGCCGGGCATCGG-TGGGTCCCCCTCTATGTGCTGCCAATCCTGCTAG-TGCAACC
608 GGATGCGCAAGCAGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCTGCAACC
* * * *
14936520 CTCGGTTCGATCTGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCGATGAAACGAG
672 CTCGGTCCGGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* *
14936585 C-GAGC-G-GGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATA
736 CAG-GCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATA
* ***
14936646 GGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
800 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
14936711 AAATTCATACAATG
865 AAATTCATACAATG
* * * * *
14936725 GTCCCATAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * *
14936790 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-AGAATGAGTTTTTAGCCCCAAACTTG
66 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAG-TTTTGGCCCCAAACTTG
** *
14936854 GTAGACGTCCTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTA
129 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
14936919 CAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCA
194 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
14936984 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGGTTGATGAGGGATAGGG
259 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
14937049 GGCCAATATATGGGCCAAGTACCAGCACCCATCGTAAATCATGTGCGCACACCCCCCCGGCCCTC
324 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-C
* * * * *
14937114 CCGATCGACGGAACCTCAATGTCGCCGGTCAGGTTCTCCGACGATGCTAC-GACGATGGTGCCCC
388 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-CTGGCGATGGTGCCCC
* * * * * *
14937178 -AGTGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCTGCAACCCTCGATC
452 GA-CGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
14937242 CGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTCCGTATGCCTC
516 C--T--G--GTT--AC------TGAAC-C---A----TAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
14937307 ATTCAACCCACGAAACGAACATGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCA-G
559 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGACAGAGGGGCGGGATGCGCAAG-CAGG
* ** * * * * ** ** *
14937371 GGATCGGCTGGGTCCCTTTCTGCATGTTGTCGATCCTGCTGCTGCAACCCTCAATTTGATCTGAT
623 GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGT-TGAT
* *
14937436 CTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGC-GAGC-G-GGCGGGC
687 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGCGGCGGGC
** * *
14937498 GGGCACTACTTCGGCCAAAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
751 GGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
14937563 TAGGCACATCTCCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
816 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
14937626 GCCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCATTTTCTATTTTTCACGATTTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * *
14937691 GAAACTTTTTACTGTTCGAGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
66 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
14937755 AGACGTCATCCTTGTCTTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACA
131 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
14937820 AGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAA
196 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14937885 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGG
261 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
14937950 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCC
*
14938014 GATCGTTGGAACC
390 GATCGTCGGAACC
14938027 ACATTACCGC
Statistics
Matches: 3479, Mismatches: 415, Indels: 260
0.84 0.10 0.06
Matches are distributed among these distances:
889 2 0.00
890 1 0.00
891 54 0.02
892 170 0.05
893 98 0.03
894 42 0.01
895 220 0.06
896 14 0.00
897 287 0.08
898 26 0.01
899 389 0.11
900 111 0.03
901 210 0.06
905 63 0.02
906 9 0.00
907 164 0.05
908 98 0.03
909 252 0.07
910 210 0.06
911 1 0.00
912 125 0.04
913 28 0.01
914 6 0.00
915 216 0.06
916 254 0.07
917 6 0.00
918 10 0.00
919 60 0.02
920 19 0.01
921 76 0.02
922 4 0.00
923 2 0.00
924 93 0.03
925 152 0.04
926 2 0.00
927 2 0.00
928 1 0.00
929 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (878 bp):
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGACG
AAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGGT
TACTGAACCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGACAGAGGGGCGGGATGCGCAAGCAGGGGATCGGCCGGGTCCCCCTCTACGTGCT
GCCGATCCTGCTGCTGCAACCCTCGGTCCGGTTGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAACGAGCAGGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATG
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATG
Found at i:14943627 original size:26 final size:26
Alignment explanation
Indices: 14943591--14943640 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14943581 CCAATCTGAT
14943591 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
14943617 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14943641 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:14944524 original size:26 final size:26
Alignment explanation
Indices: 14944495--14944547 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14944485 CCGGTCTGAT
*
14944495 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACAGGGAACGAACTCCGTATG
*
14944521 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAACGAACTCCGTATG
14944547 C
1 C
14944548 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAACGAACTCCGTATG
Found at i:14945637 original size:466 final size:466
Alignment explanation
Indices: 14944764--14945699 Score: 1498
Period size: 466 Copynumber: 2.0 Consensus size: 466
14944754 AGACAGGATG
* * * *
14944764 CGCAAGCCGTGGATCGGTAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAA
1 CGCAAGCCGTGGATAGATAGGGTGGTAAGTGGCTTTAGGCACATCTTCATATTTCTAGGTGCCAA
* * *
14944829 TGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTTACGTGAATTTTCATGGC
66 TGCCATTTCTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
14944894 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAAT
131 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAT
* * * *
14944959 TTTTTCGAAAAGCATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAAGCA
196 TTTTTCGAAAAGCATTTTGGCACCAAACTTAGTAGACGTGATCCTAGTATTTTTGTTGGCAAGCA
*
14945024 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCC
261 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCC
* * * *
14945089 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATTTCAAATGCTCTTTAAGGGGGT
326 ATTTCAGACACTTTAATGGCAAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
14945154 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTGCCAGCACCCATCG
391 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
14945219 CACATCATGTA
456 CACATCATGTA
* * *
14945230 CGCAAGCCGTGGATAGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTTTGGGTGCCAA
1 CGCAAGCCGTGGATAGATAGGGTGGTAAGTGGCTTTAGGCACATCTTCATATTTCTAGGTGCCAA
*
14945295 TGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
66 TGCCATTTCTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** *
14945360 AAGACGACTGGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGAGA-TTTTTTAAAC
131 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAA-
* * * *
14945424 TTTTTTCG-GAAGGAGTTTTGGCATCAAACTTAGTAGACGTGATCCTAGTATTTTTGTTGGCATG
195 TTTTTTCGAAAAGCA-TTTTGGCACCAAACTTAGTAGACGTGATCCTAGTATTTTTGTTGGCAAG
* *
14945488 CACAAAAAATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
259 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCC
*
14945553 CCATTTTAGACACTTTAATGGCAAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
324 CCATTTCAGACACTTTAATGGCAAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
14945618 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
389 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
14945683 CGTACATCATGTT
454 CGCACATCATGTA
14945696 CGCA
1 CGCA
14945700 CACCCTCCCG
Statistics
Matches: 430, Mismatches: 38, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
465 13 0.03
466 417 0.97
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (466 bp):
CGCAAGCCGTGGATAGATAGGGTGGTAAGTGGCTTTAGGCACATCTTCATATTTCTAGGTGCCAA
TGCCATTTCTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAT
TTTTTCGAAAAGCATTTTGGCACCAAACTTAGTAGACGTGATCCTAGTATTTTTGTTGGCAAGCA
CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCAAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTA
Found at i:14945888 original size:26 final size:26
Alignment explanation
Indices: 14945852--14945904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14945842 CCTGTCCGAT
*
14945852 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTTCGTATG
14945878 CTTAGACTAGGAATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTTCGTATG
14945904 C
1 C
14945905 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTTCGTATG
Found at i:14947073 original size:479 final size:479
Alignment explanation
Indices: 14946167--14947089 Score: 1499
Period size: 479 Copynumber: 1.9 Consensus size: 479
14946157 GTAGCTGGGT
*
14946167 TTAGGCTCATCTTCATATTTCTTAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
1 TTAGGCACATCTTCATATTTCTTAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* ** **
14946232 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTACGATTTTTG
66 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAACGATTTTCC
* *
14946297 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAAGTGTTTTGGCCCCAAACTTGGGA
131 AAAATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAAGTATTTTGGCCCCAAACTTGGGA
*
14946362 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
196 GACGTGATCCTTGTATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
14946427 GATTTTGTTACCATTTGAAAAAGGTTTCCCCATTTTAAACACTTTAATGGCTACTCGCAGCAAAC
261 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTCGCAGCAAAC
* * *
14946492 CTGTAAAATCTCAAATGCTCTTTCAGGAGGTGTGAGTTCTCAAGGTTTGACGGGGGATATGGGGC
326 CTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGC
14946557 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGCCCCCCGA
391 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGCCCCCCGA
14946622 TTGTCGAAACCCCAATGCCATCGG
456 TTGTCGAAACCCCAATGCCATCGG
14946646 TTAGGCACATCTTCATATTTC-TATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
1 TTAGGCACATCTTCATATTTCTTA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* ** *
14946710 GTCCTTTAAGTGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAATGATTTTC
65 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAACGATTTTC
* * * * * * *
14946775 CAAAATTTTTACGGTTTGGGATTTTTTTAAATTTTTTTG-GAATTCATTTTGGTCCTAGACTTGG
130 CAAAATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAAGT-ATTTTGGCCCCAAACTTGG
* **
14946839 TAGTTGTGATCCTTGTATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
194 GAGACGTGATCCTTGTATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14946904 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
259 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTCGCAGCAA
* * *
14946969 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
324 ACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGACGAGGGATAGGGG
*
14947034 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
389 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
14947090 GGCCCCCTCG
Statistics
Matches: 407, Mismatches: 35, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
478 5 0.01
479 402 0.99
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (479 bp):
TTAGGCACATCTTCATATTTCTTAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAACGATTTTCC
AAAATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAAGTATTTTGGCCCCAAACTTGGGA
GACGTGATCCTTGTATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTCGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGCCCCCCGA
TTGTCGAAACCCCAATGCCATCGG
Found at i:14948166 original size:26 final size:26
Alignment explanation
Indices: 14948128--14948180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14948118 CCTGTTCGAT
**
14948128 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAACAAACTCCGTATG
*
14948154 CTTAGACTGGGAACAAACTCCGTATG
1 CTTAGACTAGGAACAAACTCCGTATG
14948180 C
1 C
14948181 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACAAACTCCGTATG
Found at i:14948742 original size:891 final size:894
Alignment explanation
Indices: 14946646--14948883 Score: 3269
Period size: 891 Copynumber: 2.5 Consensus size: 894
14946636 ATGCCATCGG
***
14946646 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
1 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* ** **
14946711 TCCTTTAAG-TGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAATGATTTTC
66 TCCCTTAAGCT-TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTC
* * * * *** * * * *
14946775 CAAAATTTTTACGGTTTGGGATTTTTTTAAATTTTTTTGGAATTCA-TTTTGGTCCTAGACTTGG
130 AAAAATTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAG
* * *
14946839 TAGTTGTGATCCTTGTATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
194 TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
*
14946904 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
259 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAA
14946969 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
324 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
14947034 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTC
389 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--------CCCCCAC
* ** * * * *
14947099 GATCGCCAGAACCCCAATGACGTCGGTCAGGTTGTCCGACGATGCTCTGGTGATGGTGCCTTGGT
446 GACCGCCAGAACCCCAATGACCCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGGC
* * * *
14947164 GAAGAAAAATGTGGCACCAGCACATGCGCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTAT
511 AAAGAAAAATGTGGCACCAGCACATGCGCGACCCCAACAAGTGCTGCCGCAACCCTCGGTCCTAT
* *
14947229 CCAATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGAATAAACTCCATATGCCTATGTC
576 CCAATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGAACAAACTCCATATGCCTAAGTC
** * * * * *
14947294 AACCCACGAAAGGAGCGTGCAGGCACTCAGCCGGCTAGAGGGGCGGGCTGCGTAAGCCGGGGATC
641 AACCCACGAAACAAGCGTACAGGCACTCAGACGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATC
* * * * ** *
14947359 GGCTGGGTACCCCTTTGCATGCTACCGATCCTGCTACTGCAACCCTTGGTCCGGTCTGATCTTAG
706 GACCGGGTACCCCTCTGCATGCTACCGATCCTACTACCACAACCC-TGATCCGGTCTGATCTTAG
* * *
14947424 ACTGGCAAATGAACTCTAAATGCCTAAGCCAACCGACGGAACGAGCGGGCGGGCGGGCGGGCGTG
770 ACTGG-AAATGAACTCCAAATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGTG
* * *
14947489 CACTACGTTGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
834 CACGACGTCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
14947550 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGG
1 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
14947615 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCACAATTTTTG
66 TCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
** * * *
14947680 AAACCTTTTACGGTGCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTCGTA
131 AAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTA
** *
14947745 GACATGATCCTTGTATTTTTGTTGGCATGTA-AAAAAAATTCAGCTAAAAA-TTCGAAGTGTACA
196 GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTT-GAAGTGTACA
* *
14947808 AGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
260 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAA
14947873 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
325 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
14947938 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCACGACCGCCAG
390 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACGACCGCCAG
14948003 AACCCCAATG-CCCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGGCAAAGAAAAA
455 AACCCCAATGACCCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGGCAAAGAAAAA
* * * *
14948067 TGTGGCACCAGCACATGC-CTGACCCCAACAAGTGCTGTCGCAACCCTCGGTCCTGTTCGATCTT
520 TGTGGCACCAGCACATGCGC-GACCCCAACAAGTGCTGCCGCAACCCTCGGTCCTATCCAATCTT
* * *
14948131 AGACTAGGAATGAACTCCGTATGCTTAGACTGGGAACAAACTCCGTATGCCTAAGTCAACCCATG
584 AGACTAGGAATGAACTCCGTACGCTTAGACTGGGAACAAACTCCATATGCCTAAGTCAACCCACG
*
14948196 AAACAAGCGTAC-GAGCACTCAGACGTCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGG
649 AAACAAGCGTACAG-GCACTCAGACGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGG
* * * *
14948260 TCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACATCC-GATCTGGTCTGATCTTAGACTAGG
713 TACCCCTCTGCATGCTACCGATCCTACTACCACAAC--CCTGATCCGGTCTGATCTTAGACT-GG
* * ** *
14948324 -AATGAACTCCATATGCTTAAGCCAACCGACGAAACGAGCGGGTTGGCGGACGGGCG-G-ACGAT
775 AAATGAACTCCAAATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGTGCACGAC
14948386 GTCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
840 GTCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
14948441 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
1 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
14948506 TCCCTTAAGCTTTCACGTGTA-TTTCTTGGCAACATGACTCGTTTTCTATTTTTCACAATTTTCA
66 TCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
*
14948570 AAAATTTTTGCGGTTCGGGATTTTTTAAAACTTTTTT-GAAAGGAGTTTTGGCCCCAAACTTAGT
131 AAAATTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGT
*
14948634 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTCCA
195 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACA
*
14948699 AGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAA
260 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAA
* * * **
14948764 CCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATTAGGGATAGGACG
325 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
14948829 ACAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACAACCCCC
390 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC
14948884 GGCCCCCCGA
Statistics
Matches: 1205, Mismatches: 117, Indels: 36
0.89 0.09 0.03
Matches are distributed among these distances:
890 117 0.10
891 340 0.28
892 9 0.01
893 51 0.04
894 262 0.22
895 26 0.02
896 2 0.00
902 1 0.00
903 223 0.19
904 174 0.14
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (894 bp):
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
AAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTA
GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACGACCGCCAGA
ACCCCAATGACCCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGGCAAAGAAAAAT
GTGGCACCAGCACATGCGCGACCCCAACAAGTGCTGCCGCAACCCTCGGTCCTATCCAATCTTAG
ACTAGGAATGAACTCCGTACGCTTAGACTGGGAACAAACTCCATATGCCTAAGTCAACCCACGAA
ACAAGCGTACAGGCACTCAGACGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTAC
CCCTCTGCATGCTACCGATCCTACTACCACAACCCTGATCCGGTCTGATCTTAGACTGGAAATGA
ACTCCAAATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGTGCACGACGTCGGC
CAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
Found at i:14949258 original size:389 final size:389
Alignment explanation
Indices: 14948532--14949284 Score: 1164
Period size: 389 Copynumber: 1.9 Consensus size: 389
14948522 GTGTATTTCT
* ** *
14948532 TGGCAACATGACTCGTTTTCTATTTTTCACAATTTTCAAAAATTTTTGCGGTTCGGGATTTTTTA
1 TGGCAACACGACTCGTTTTCTATTTTAAACAATTTTCAAAAATTTTTACGGTTCGGGATTTTTTA
*
14948597 AAACTTTTTTGAAAGGAGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGTATTTTTGTTGGCA
66 AAACTTTTTTGAAAGGAGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGAATTTTTGTTGGCA
* * *
14948662 TGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTCCAAGATTTTGTGACCATTTGAATAAAGTGT
131 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
14948727 CCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGG
196 CCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGG
* *** * *
14948792 GGGTGTGAGTTCTGGAGGTTTGATTAGGGATAGGACGACAATATAAGGGCCAAGTACCAGAACCC
261 GGGTGTGAGGTCACAAGGTTTGATGAGGGATAGGACGACAATATAAGGGCCAAGTACCACAACCC
* *
14948857 ATCGCACATCATGTGCGCACAACCCCCGGCCCCCCGATCACCGAAACCTCAATGCCATCGGTCA
326 ACCGCACATCATGTGCACACAACCCCCGGCCCCCCGATCACCGAAACCTCAATGCCATCGGTCA
* ** *
14948921 TGGCAAGACGACTCGTTTTCTATTTTAAATGATTTTCAAAAATTTTTACGGTTTGGGATTTTTTA
1 TGGCAACACGACTCGTTTTCTATTTTAAACAATTTTCAAAAATTTTTACGGTTCGGGATTTTTTA
* * *** * * * *
14948986 AAATTTTTTTGGAATTCGTTTTGGTCCCAGACTTGGTAGTTGTGATCCTTGAATTTTTGTTGGCA
66 AAACTTTTTTGAAAGGAGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGAATTTTTGTTGGCA
14949051 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
131 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
14949116 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
196 CCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGG
** * * *
14949181 GGGTGTGAGGTCACAAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCACCACCC
261 GGGTGTGAGGTCACAAGGTTTGATGAGGGATAGGACGACAATATAAGGGCCAAGTACCACAACCC
* *
14949246 ACCGCACATCATGTGCACACACCCCCCGGCCCTCCGATC
326 ACCGCACATCATGTGCACACAACCCCCGGCCCCCCGATC
14949285 GCAGGAACCC
Statistics
Matches: 326, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
389 326 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (389 bp):
TGGCAACACGACTCGTTTTCTATTTTAAACAATTTTCAAAAATTTTTACGGTTCGGGATTTTTTA
AAACTTTTTTGAAAGGAGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGAATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGG
GGGTGTGAGGTCACAAGGTTTGATGAGGGATAGGACGACAATATAAGGGCCAAGTACCACAACCC
ACCGCACATCATGTGCACACAACCCCCGGCCCCCCGATCACCGAAACCTCAATGCCATCGGTCA
Found at i:14950166 original size:26 final size:26
Alignment explanation
Indices: 14950137--14950189 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14950127 CCGATCTGAT
* * *
14950137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCATATG
14950163 CTTAAACTAGGAATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
14950189 C
1 C
14950190 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:14951655 original size:901 final size:897
Alignment explanation
Indices: 14949387--14951955 Score: 3414
Period size: 901 Copynumber: 2.9 Consensus size: 897
14949377 GCCCAGCATG
* *
14949387 TGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAA
* * * * * * *
14949452 -TCGACGAAACGAGCAG-GCAGACGGG-TAGGCGGGCACTACGTCGGCCAGAGAGATAGGATGCG
65 CT-GACGAAACAAGC-GTGCGGGCGGGCT-GGCGGGCACTATGCCGGCCAGA-A-AGACGATGCG
*
14949514 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTTTGCATGCCAATG
125 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATG
*
14949579 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
190 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAA
* * ** *
14949644 GATGACTCGTTTTTTATTTTTCACGATTTTCAAAACCTTTTGT-CGTTTCGGATTTTTTAAAATT
255 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTT-TACGGTTCGGATTTTTTAAAATT
* * * * *
14949708 TTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGATGTGATCACTGTATTTTTGTTGGCATGCAT
318 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCAC
* *
14949773 AAAAGAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCC
383 AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
14949837 ATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGT
448 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14949902 GTGAGTTCTCGAGGTTTTATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
513 GTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
* *
14949967 CACATCATGTGCGCACACCTCCCCTCGGACCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAG
577 CACATCATGTGCGCACA-C-CCCC-CGGCCCCCCT-ATCGTCGGAACCCCAATGCCGTCAGTCAG
* ** * * ** *
14950032 GTTCTCTGGTGATGCTCCTACGATGGTGCCCCGATGAAGAAAAATGTGACACCAGCACATGCCCG
638 GTTCTCCGACGATGCTACGACGATGGTGCCCCGATGAAGAAAAATACGACACCAACACATGCCCG
** *
14950097 AGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
703 AGCCCAGCATGTGCTGTCGCAACCCGCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
14950162 GCTTAAACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
768 GCTTAAACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAG
* * ** *
14950227 CCGGCCAGAGGGGCAGGATGCGCAAGCTAGGGATCGATCGGGTCCCCCTCTGCTGCTGTCGATCT
833 CCGGCCAGAGGGGCAGGATGCGCAAGCTAGGGATCGACCGGGTCCCCCTCTACTGCTACCGATCC
* * * *
14950292 TGCTGTCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAAGGAACTCGATATGCTTAAGCCAA
1 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCG-TATGCCTAAGCCAA
* * * * * * *
14950357 CCGACG--A-AA---T--GAGCGGACAGGCGGGCACTGTGCCAGCCAGAGAGACGGGATGCGCAA
65 CTGACGAAACAAGCGTGCGGGCGGGCTGGCGGGCACTATGCCGGCCAGAAAGAC--GATGCGCAA
** * *
14950414 GCTATGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTAATATTTTTGTC-TGCCAATGCC
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG-CATGCCAATGCC
* *
14950478 ATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAACA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGA
* *
14950543 CGACTCATTTGCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGTATTTTTTAAAATTTTT
257 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGG-ATTTTTTAAAATTTTT
** *
14950608 TCGGAAGGAGTTTTGAACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC--A
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAA
14950671 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14950736 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTC
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14950801 AATTCTC-AAGTTTGATAAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* *
14950865 ATCATGT-CTGCACACCCCCCAGCCCCCCTATCGTCGGAACCCCAATGCCGTCAGTTAGGTTCTC
580 ATCATGTGC-GCACACCCCCCGGCCCCCCTATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTC
* * *
14950929 CGACGATGCTACGACGATGGTGCCCCGGTGACGAAAAAATACGACACCAATACATGCCCGAGCCC
644 CGACGATGCTACGACGATGGTGCCCCGATGAAG-AAAAATACGACACCAACACATGCCCGAGCCC
* *
14950994 AGCATGTGCTG-CTGCAATCCGCGATCC-AGTTTGATCTTAGACTGGGAATGAACTCCGTATG-T
708 AGCATGTGCTGTC-GCAACCCGCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
14951056 TGAGAGTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGTC
771 T-AAACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCC
* * **
14951121 GGGCAGAGGGGC-GAGATGCGCAAGCTGGGGATCGACCGGGTCTGCCTCTACGTGCTACCGATCC
835 GGCCAGAGGGGCAG-GATGCGCAAGCTAGGGATCGACCGGGTCCCCCTCTAC-TGCTACCGATCC
* * **
14951185 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC-GTATGCCTAAGCCAA
* * * *
14951250 CTGATGAAACAAGCGTGCGGGCGGGCTGGCGGGCACTATACCGGCTAGAAAGACGATTTGCACAA
65 CTGACGAAACAAGCGTGCGGGCGGGCTGGCGGGCACTATGCCGGCCAGAAAGACGA--TGCGCAA
*
14951315 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
* *
14951380 -TTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCTGGTGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGAC
*
14951444 GTCTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTT
* * * * *
14951509 TGGAAGGATTTTTGGCCCCAGACTTGGCAGACGTGATCCCTATATTTTT-TTGGCATGCACAAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAA
* * *
14951573 AAAATTCAGCTACAAACTCGAAGTGTACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14951638 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14951703 GTTCTCGAGGTTTGATGAGGGATAGGCGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACA
517 GTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * * * *
14951767 TCATGTGCACACACCCCCCGGCACCCCCGATCATTGGAACCCCAATGCCGTCGGATC-GATTCTC
581 TCATGTGCGCACACCCCCCGGC-CCCCCTATCGTCGGAACCCCAATGCCGTCAG-TCAGGTTCTC
** * * * * *
14951831 CGGTGATGCCCTA-G-TGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCC
644 CGACGATG--CTACGACGATGGTGCCCCGATGAAGAAAAATACGACACCAACACATGCCCGAGCC
* ** * * * * * *
14951894 CAGCATCTGCTACCGTAACCCTCAATCTGATCTAATCTTAGACT-GGAATGAACTCTGTATGC
707 CAGCATGTGCTGTCGCAACCCGCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
14951956 CTAATCCAAC
Statistics
Matches: 1453, Mismatches: 168, Indels: 90
0.85 0.10 0.05
Matches are distributed among these distances:
891 64 0.04
892 186 0.13
893 72 0.05
894 5 0.00
895 72 0.05
896 138 0.09
897 246 0.17
898 1 0.00
899 14 0.01
900 177 0.12
901 333 0.23
902 76 0.05
903 4 0.00
904 4 0.00
905 61 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAAC
TGACGAAACAAGCGTGCGGGCGGGCTGGCGGGCACTATGCCGGCCAGAAAGACGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
TGCGCACACCCCCCGGCCCCCCTATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGAT
GCTACGACGATGGTGCCCCGATGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTG
CTGTCGCAACCCGCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGA
ATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
CAGGATGCGCAAGCTAGGGATCGACCGGGTCCCCCTCTACTGCTACCGATCC
Found at i:14952568 original size:715 final size:716
Alignment explanation
Indices: 14951208--14952664 Score: 2120
Period size: 715 Copynumber: 2.0 Consensus size: 716
14951198 CTCGGTCCGG
** *
14951208 TCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAACAAGCGTGCGGGCG
1 TCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACAAAACAAGCGGGCGGGCG
* * * **
14951273 GGCTGGCGGGCACTATACCGGCTAGAAAGACGATTTGCACAAGCCGTGGATCGATAGGGTGGTAG
66 GGCTGGCGGGCACTACACCGACCAGAAAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAG
* *
14951338 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTATGGCTTGTAAATTCATAA
131 GTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTATGGCTTCTAAATTCATAA
** *
14951403 AATGGTCCCTTAAGCCTTCTGGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGAT
196 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** ** * *
14951468 TTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAGACT
261 TTGCGAAACTTTTTACAATTCTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
*
14951533 TGGCAGACGTGATCCCTATATTTTTTTGGCATGCACAAAAAAAATTCAGCTACAAACTCGAAGTG
326 TGGCAGACGTGATCCCTATATTTTTTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTG
*
14951598 TACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
391 TACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
*
14951663 CAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
456 CAAACCTGTAAAATATCAAATGCTCTATAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
14951728 GCGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCACCC
521 GCGGCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACACACCCCCCGGCACCC
** * ** **
14951793 CCGATCATTGGAACCCCAATGCCGTCGGATCGATTCTCCGGTGATGCCCTAGTGATGGTGCCCCG
586 CCGATCACCGGAACCCCAATGCCGTCGGATAGATTCTCCGACGATGCCCTAGCAATGGTGCCCCG
* ** *
14951858 ACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATCTGCTACCGTAACCCTCAATCTG
651 ACAAAGAAAAATACAGCACCAGCAAATGCCCGAGCCCAGCATCTGCTACCGTAACCCTCAATCTG
14951923 A
716 A
* * ** *
14951924 TCTAATCTTAGACT-GGAATGAACTCTGTATGCCTAATCCAACTGACAAAAGGAGGGGGCGGGCG
1 TCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACAAAACAAGCGGGCGGGCG
* * * * *
14951988 GGC-GGACGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTA
66 GGCTGG-CGGGCACTACACCGACCAGAAAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTA
* *
14952052 GGTGAGTTTTGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCAT
130 GGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTCTAAATTCAT
* * *
14952117 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTGT-ATGGCAAGATGACTCGTTTTTTATTTTTCAC
194 AAAATGGTCCCTTAAGCCTTCACGTGAAGTT-TCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * *
14952181 GATTTGCGAAAGTTTTTGCAATTC-GAGATTTTTT-TAATTTTTTTGGAAGGAGTTTTGGCTCTA
258 GATTTGCGAAACTTTTTACAATTCTG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
* * * *
14952244 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCT
322 AACTTGGCAGACGTGATCCCTATATTTTT-TTGGCATGCACAAAAAAAATTCAGCTAAAAACTCG
* *
14952308 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
386 AAGTGTACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
* * *
14952373 GGCAGCAAGCCTGTAAAATATCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
451 GGCAGCAAACCTGTAAAATATCAAATGCTCTATAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
14952438 GATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCAAT-GCACATCATGTGCGCACACCCCCCG
516 GATAGGCGG-CAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACACACCCCCCG
* * * *
14952502 GCACCCCCGATCGCCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCC-GGCAATGG
580 GCACCCCCGATCACCGGAACCCCAATGCCGTCGGATAGATTCTCCGACGATGC-CCTAGCAATGG
*
14952566 TGCCCCGACAAAGAAAAATACAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTACCGTAACCCT
644 TGCCCCGACAAAGAAAAATACAGCACCAGCAAATGCCCGAGCCCAGCATCTGCTACCGTAACCCT
** *
14952631 CGGTCTGG
709 CAATCTGA
*
14952639 TCCGATCTTAGACTGGGAATGAACTC
1 TCCAATCTTAGACTGGGAATGAACTC
14952665 CATATGCTTA
Statistics
Matches: 657, Mismatches: 76, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
714 2 0.00
715 488 0.74
716 166 0.25
717 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (716 bp):
TCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACAAAACAAGCGGGCGGGCG
GGCTGGCGGGCACTACACCGACCAGAAAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAG
GTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTATGGCTTCTAAATTCATAA
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTGCGAAACTTTTTACAATTCTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
TGGCAGACGTGATCCCTATATTTTTTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATATCAAATGCTCTATAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GCGGCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACACACCCCCCGGCACCC
CCGATCACCGGAACCCCAATGCCGTCGGATAGATTCTCCGACGATGCCCTAGCAATGGTGCCCCG
ACAAAGAAAAATACAGCACCAGCAAATGCCCGAGCCCAGCATCTGCTACCGTAACCCTCAATCTG
A
Found at i:14952681 original size:26 final size:26
Alignment explanation
Indices: 14952645--14952697 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14952635 CTGGTCCGAT
14952645 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14952671 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14952697 C
1 C
14952698 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14954366 original size:26 final size:26
Alignment explanation
Indices: 14954337--14954389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14954327 CCGGTCTGAT
* *
14954337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
14954363 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
14954389 C
1 C
14954390 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14956149 original size:26 final size:26
Alignment explanation
Indices: 14956097--14956149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14956087 CCGATCCGAT
*
14956097 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
14956123 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
14956149 C
1 C
14956150 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14957002 original size:26 final size:26
Alignment explanation
Indices: 14956973--14957025 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14956963 CTGGTCCGAT
14956973 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14956999 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14957025 C
1 C
14957026 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14959730 original size:26 final size:26
Alignment explanation
Indices: 14959694--14959746 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14959684 CTGATCCAAT
14959694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14959720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14959746 C
1 C
14959747 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14960643 original size:26 final size:26
Alignment explanation
Indices: 14960599--14960651 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14960589 CCAGTCTGAT
14960599 CTTAGACTGGGAATTAACTTC-GTATG
1 CTTAGACTGGGAATTAAC-TCGGTATG
14960625 CTTAGACTGGG-ATTGAACTCGGTATG
1 CTTAGACTGGGAATT-AACTCGGTATG
14960651 C
1 C
14960652 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATTAACTCGGTATG
Found at i:14961518 original size:26 final size:26
Alignment explanation
Indices: 14961467--14961519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14961457 CCGGTCTGAT
* **
14961467 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14961493 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14961519 C
1 C
14961520 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14961616 original size:868 final size:880
Alignment explanation
Indices: 14958102--14962281 Score: 5221
Period size: 868 Copynumber: 4.7 Consensus size: 880
14958092 CTCAGTATGG
* *
14958102 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGTGGACG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CG
* ** * * * *
14958167 GGCAGGCGTCCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCAATAGGATGGTAG
65 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ** *
14958232 GTGGGTGTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATATTTATGGCTTGTAAA-TCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14958296 CAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
14958361 TTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAAACTTTTTCGGAAGGATTTTTGGTCCCAAAC
260 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
14958426 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
14958491 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14958556 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
14958621 GGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGTGCACACCCCCCGGCCC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCC
* * * * **
14958686 CCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGTGATGGTGCCCC
585 CCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC
* * * * * * *
14958751 GACGATGAAAAATGCGGCACCAGCACAAGGCCGAGCCTAGCATGTGCTGCCACAGCCCTCGGTCC
650 GACGAAGAAAAATGCGACACCAGCACATGGCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
*
14958816 AGTCTGATCTTTGACTGGGAATGAACTCTGTATGC-----C------T-AA----GTA-----AA
715 AGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
14958860 --C--CCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
780 GTCAACCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCAG-GGA
* * *
14958921 TCG-GTCGGGTCCCCCTCTGCATGTTGTCGATCCTGCTACTGCAACCCTCAGTCC
844 TCGACT-GAGTCCCCCTCT---TG-TCT-GA--CTG---CTG--A--CT--G-CC
* * *
14958975 AGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC-AAA--A-C--G-AGC
1 --TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGC
* * * *
14959033 GGGCGGGCGGGCACTACACCGGCCAAAAAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
64 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
14959098 GGTGAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
129 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
14959163 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
14959228 ATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTTAAAGTTTTTCGGAAGGAGTTTTGTCCCCAA
259 ATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
** * *
14959293 ACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATTCACAAAAAAAATCAGCTAAAAACTCGAA
323 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
14959358 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGG
388 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * * *
14959423 CAGCAAACCTATACAATCTCAAATGCTCTTCAAGGGAGTGTGAGTTCTCAAGGCTTGATGAGGGA
453 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
14959488 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACA-CATGTGCGCACACCCCCCCGG
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGG
* *** *
14959552 CCCCCTCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCTACGACGCTCCGACGATGGTG
582 CCCCC-CGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG
* * * * *
14959617 CCCCGACGAAGAAAAATACGGA-ACCAGCACATGGTCGAGCCCAACATGTGCTGCCGTAACCCTC
646 CCCCGACGAAGAAAAATGC-GACACCAGCACATGGCCGAGCCCAGCATGTGCTACCGCAACCCTC
* ** *
14959681 GGT-CTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
710 GGTCCAG-TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
14959745 GCCTAAGTCAACCCATAAAACGAGCGTGCGGCCGCTCAGTCGAG-CAGAGGGGCAGGATGCGCAA
774 GCCTAAGTCAA-CCACAAAACGAGCGTGCGGGCGCTCAGCCG-GCCAGAGGGGCGGGATGCGCAA
* * * *
14959809 GTCAGGGATCAACCGGGTCCCCCTCTGCATGCTACCGATCCTGCTG-CTGCAACCCTC
837 G-CAGGGATCGACTGAGTCCCCCTCT---TG-T-CTGA--CTGCTGACTG-----C-C
* * * *
14959866 AGTCTGGTTTGATCATAGACTGGGAACGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGG
1 --TC-----TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--
* *
14959931 GTGGGCCGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGA
57 --GGG-CGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
14959996 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATTCCATTTTTATGGCTT
119 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
14960061 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCT
184 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
14960125 ATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGTAGGAGTT
249 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
14960189 TTGGCCCCTAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAGCTA
313 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
14960253 AAAACTCGAGGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAA
378 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
14960317 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
443 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
14960382 TGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGTGCAC
508 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC
* *
14960447 ACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCA
573 A-CCCCCCGGCCCC-CCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCC
* * *
14960512 GACGATGGTGCCCC-AGGGAAGAAAAATGCGACACCAGCACATGTCCGAGCCCAGCATGTGCTAT
636 GACGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGCACATGGCCGAGCCCAGCATGTGCTAC
* * *
14960576 CGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATTAACT-TCGTATGCTTAGACTGGGATTG
700 CGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATG
* * * * * **
14960640 AACTCGGTATGCCTAAGTCAACCAACAAAATGAACATGCGGGTGCTCAGCCGGCCAGAGGGGATG
764 AACTCCGTATGCCTAAGTCAACC-ACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * *
14960705 GATGCGCAAGCTGGGATTGGCTGAGTCCCCCTC-TG-C--A----TG-CTG-C
828 GATGCGCAAGCAGGGATCGACTGAGTCCCCCTCTTGTCTGACTGCTGACTGCC
* * *
14960748 -C-GATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACTGACGAAACGAGTGGGCGGCGG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGG
* * * *
14960811 GCGGGCGGGTAATATGTCGGCCAGAGAGACGGGATGCAG-AAGCCGTGGATCGATAGGGTGGTAG
66 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAG
*
14960875 GTGGGTTTAGGCACAAT-TTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
130 GTGGGTTTAGGCAC-ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
14960939 ACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * *
14961004 ATTTTTGAAAC-TTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
259 ATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * * *
14961068 CTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGTTAAAAAATTGAAG
324 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
14961133 TGTACAAGATTTTGTGACTATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTATTGGC
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14961198 AGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGG-GTGAGTTCTCCAGGTTTGATGAGGGA
454 AGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * * *
14961262 TAGGGGGACAATAAAAGGGCCAAGTACCAGTACCCATCGCACAACATGTGCGCACACCCCCCGAC
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGC
* * * * *
14961327 CCCCCGATCGCCGAAAACCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGATGACGGTGCC
583 CCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
* * *
14961392 CCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGAT
648 CCGACGAAGAAAAATGCGACACCAGCACATGGCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT
* * *
14961457 CCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCATATGCCT
713 CCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
14961522 AAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG-GGGATGCGCAAGTCAG
778 AAGTCAACC-ACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CAG
*
14961586 GGATCGACTGAGTCCCCCT-TTGCGTGCTGCCAATCTTGCTGCCGCAACCTTCGATCTGG
841 GGATCGACTGAGTCCCCCTCTT--GT-CTG---A-C-TGCT---G--A-C-T-G--C--C
* * * * *
14961645 TCTGATCTTAGACTGTGAATGAACTCCGTATGCCTATGCTAACCGACGAAATGAGCGGGTGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGGCG
* * * * * *
14961710 GGCAGGCGGGCACTACGTCAGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATGGGGTGGTAG
65 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
14961775 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
14961840 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** *
14961905 TTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
260 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * * *
14961970 ATGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCATAAAAAAATTTAG-TAAAAAACACGAAG
325 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAG
*
14962034 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGC
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14962099 AGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGAT
454 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*** * * * *
14962164 ACTAGGCCAATATAAGTGCCAAGTACTAGTACCCATCGCACATCATGTGTGCATACCCCCTCGGG
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCC-C-GG
* * *
14962229 CCCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTC
582 CCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
14962282 TGGCGAAGAA
Statistics
Matches: 2886, Mismatches: 302, Indels: 206
0.85 0.09 0.06
Matches are distributed among these distances:
867 122 0.04
868 576 0.20
869 351 0.12
870 282 0.10
871 9 0.00
872 2 0.00
873 46 0.02
874 3 0.00
875 46 0.02
877 1 0.00
879 1 0.00
881 1 0.00
882 3 0.00
883 1 0.00
886 5 0.00
888 2 0.00
889 5 0.00
890 2 0.00
891 8 0.00
892 1 0.00
893 4 0.00
895 1 0.00
896 117 0.04
897 7 0.00
898 1 0.00
899 53 0.02
900 200 0.07
901 266 0.09
902 1 0.00
903 48 0.02
904 171 0.06
905 267 0.09
906 73 0.03
907 44 0.02
908 166 0.06
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (880 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGG
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCC
CCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
ACGAAGAAAAATGCGACACCAGCACATGGCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCA
GTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGATC
GACTGAGTCCCCCTCTTGTCTGACTGCTGACTGCC
Found at i:14963176 original size:26 final size:26
Alignment explanation
Indices: 14963138--14963189 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14963128 CCGATCTGAC
*
14963138 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14963164 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14963190 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14964526 original size:883 final size:871
Alignment explanation
Indices: 14962314--14967516 Score: 5520
Period size: 898 Copynumber: 6.0 Consensus size: 871
14962304 AGCACATGCT
* * * * * *** *
14962314 CGAAACAAGCGTGCAGG-CGCTGAACCGGCCATAGGGGTGGGATATGCAAGCCGAGGATCGGTCG
1 CGAAACGAGCGTGC-GGACGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTCG
* * ** * * * *
14962378 GGTCCCCCTCTGCGTGCTACCTATCCTATTGTCGGAACCCTCGG-TCTAGTCCGATCTTAGACTG
65 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTC-GGTCCAATCTTAGACTG
* * *
14962442 GGAATGAACTCCATATGCCTAAGCCAACCGATG--A--AA----CGGGCGAGCGGGCACTACGTC
129 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGTC
* * * * *
14962499 GGCTAGAGAGGCGTGATGCGCAAGCCGTGGATCGATAAGGTAGTAGGTGGGTTTAGGCACATCTT
194 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
** * *
14962564 CATATTTCTATGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAACCCTT
259 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
14962629 CACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTGTA-
324 CACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTG-AG
* * * *
14962693 GTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAGCGTGGTAGACGTGATCCTT
388 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
14962758 TTACTTTTGTTAGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGTTTTTGTGACC
453 GTACTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
14962823 ATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
518 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC
14962888 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
583 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
14962953 CAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCCCGGCCCCCCCGATCGCCGGTACCC
648 CAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCC-ATCGTCGGAACCC
*
14963018 CAATG-TCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCG
712 CAATGCT-GTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT-GTGCCCCGACGAAGAAAAATGCA
* * *
14963082 GCACCAACACATA-CCTGAGCGCAGCATGTG-TGCCGCAACCCTCAGTCCGATCTGACCTTAGAC
775 GCACCAGCACA-AGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CG----G----T---C
* *
14963145 TAGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGTCTAAGTCAACCCA
823 T-GG--T----TT-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
14963204 CGAAACGATCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTTGG
1 CGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTCGG
* * * * * * * *
14963269 GTCCCCCTCTACATGTTTCCGATCTTGCTTCCGCAACCCTTGGTTCGGTCCAATCTTAGATTGGG
66 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGG
* * *
14963334 AATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGAGCGGGCAGGCGGGCACTACGTCGG
131 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGTCGG
* *
14963399 CCAGAGAGATGGGATGCGCAAGCCGTGGTTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
196 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
14963464 TATTTC-GACGTGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
261 TATTTCTG-CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * *
14963528 ACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACATTTTGTGGT
325 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGAGGT
* * *
14963593 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAACCTTGGTAAACATGATCCTTGT
390 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * * * *
14963658 ATTTTTTTTGGCAAGCACAAAAAAAATCAGGTAAAAACTCGAAGTTTACAAGATTTTGTGACCAT
455 ACTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
14963723 TTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTGGCAAACCTGTAAAATCTCAA
520 TTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAA
*
14963788 ATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
585 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** * * *
14963853 AGTACCAAAACCCATCGCACATCACGTGCGTACACCCTCCCGGCCCCCTCCATCGTCGAAACCCT
650 AGTACCAGCACCCATCGCACATCATGTGCGTACACCC-CCCGGCCCCC-CCATCGTCGGAACCCC
* * * *
14963918 AATGCTGCCGGCCAGGTTCTTCGGCGATGCTCCGACGATGCTGCCCCGATGAAGAAAAATGCAGC
713 AATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATG-TGCCCCGACGAAGAAAAATGCAGC
* *
14963983 ACCAGCACAAGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTTTGATCTTAGACTAG
777 ACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGG
14964048 GAATGAACTCCGTATGCCTAAGTCAACCCA
842 GAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
14964078 CGAAACGAGCGTGCGGCTCGTTCAGCCGGCTAGAGGGGCGGGATGCACAAGCCAAGGATCAGTCG
1 CGAAACGAGCGTGCGG-ACGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTCG
14964143 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGG
65 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGG
14964208 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACGCA
130 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---A-CGGGCGGGCGGGC-GG---GCA
* * *
14964273 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGC
187 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
14964338 ACATCTTCATATTTTTGCGTGCCAATGTCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTT
252 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
14964403 AAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGTAACTT
317 AAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
* **
14964468 TTTAAGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
382 TTTGAGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
14964533 ATCCTTGTACTTTTTTTGGCATGCATAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTT
447 ATCCTTGTACTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
14964598 CTGACCATTTGAAAAAAGTGTCCCCATTTCAAGCACTTTAATAGCTACTGGTAGCAAACCTGTAA
512 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAA
14964663 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
577 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * *
14964728 AAGGGCCAAGTACCAGCACCCATCACACATAATTTGCGTAC-CCCCTCGGCCCCCCTGACCGTCG
642 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCC-CATCGTCG
* * * * * * **
14964792 GAACCCCAATGCCGTCGGTCAAGTTCTCCGGTGATACTCTGACAATGGTGCCCCGGGGAAGAAAA
706 GAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT-GTGCCCCGACGAAGAAAA
* * * * * * * * **
14964857 ATGCAGCAACAGCACATGCCCGAGCCTAGTATGTGCTACGGTAACCCTCGGTCCGGTCCGATCTT
770 ATGCAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTT
* * *
14964922 AGACTGGGAATGAACTCTGTATGCCTAAGTCATCCTA
835 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** * *
14964959 CGAAACGAGCGTGCGGACGCTCAGCTGGCCAGAGGGGCGGGATGCATAAGTTGGGGATC-GACCG
1 CGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAG-TCG
* * * * * *
14965023 AGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTGGATTGG
65 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGG
* * * *
14965088 GAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGTACTTC
130 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC--G-GG-CGGGCGGGCGGGCACTAC
* *
14965153 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATTGATAGGGTGGTAGGTGGGTTTAGGCACAT
191 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
14965218 CTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGC
256 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * *
14965283 CTTCACGTGAACTTTCATGGCAAGACGACTCGTTTGCTATTTTTCACAATTTTTGAAACTTTTGG
321 CTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTG
* * * * *
14965348 TGGTTCGGGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTTGGTAGATGTGATCC
386 AGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
14965413 TTGTATTTTTGTTGGCATGCA-AAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTG
451 TTGTACTTTTGTTGGCATGCATAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
** * **
14965477 ACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAAT---TGC-GGT-G------TG--AGTT
515 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
* * * * * * ** *
14965529 CTC-GA-GGT-TTGATGAGGGAT-AGAGGGC-C-A------AT-----ATA-AGGGCCAAGTACT
580 CTCAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TA-T
** * ** * ** **** * * ** * ** *
14965576 -AGCACCCA-TTGCA-CA-TCAT-GTGCATACACCCCCCG-GC-CCCCTCGATCGCCGGAAC--C
642 AAGGGCCAAGTACCAGCACCCATCGCACAT-CA-TGTGCGTACACCCCCCGGCCCCCCCATCGTC
** ** * *
14965632 -CCA-----ATGC---C-GTC-GGTAAT-----GAT-CTCTGACGATGGGCCCCGACGAAGAAAA
705 GGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGTGCCCCGACGAAGAAAA
* * * * * **
14965680 ATAC-GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCCCGATCTGATCCGATCT
770 ATGCAG-CACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCT
* ** *
14965744 TAGACTGGAAAAAAACTCTGTATGCCTAAGTCAACCCA
834 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
14965782 TGAAACGAGCGTGCGGGCACTCAGTCAGCCAAAGGGGCAGGATGCGCAAGCCGAGGATCAG-CAG
1 CGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTC-G
* * * *
14965846 GGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
65 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGG
* * * *
14965911 GAATGAACTCCGTATGCCTAACCCAACCGATGAAATGAGCGGGCGGGCGGACGGGCGGGCACTAC
130 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC--G-GG-CGGGCGGGCACTAC
*
14965976 G-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACA
191 GTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
14966040 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAG
255 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* ** * * * *
14966105 CCTTGATGTGAAGTTTCATGGCAAGACGACTCTTTTTTTATTTTTCATGATTTTTGAAACTTTTT
320 CCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
*
14966170 -ACGGTTCGGG----------ATTTTTT-------A--------CCCAAACTTGGTAGACATGAT
385 GA-GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
** * *
14966209 CCTTGTGTTTTTGTTGGCATGCA-AAAAAAATGCAGCTAAAAACTGGAAGTGTACAAGATTTTGT
449 CCTTGTACTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
14966273 GACCATTTGAAAAAAGTGTCCCCGTTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
514 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
14966338 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
579 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
14966403 GGGCCAAGTAGCAGCACCCAGT-GCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGCCG
644 GGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGTACA-CCCCCCGGCCCCC-CCATCGTCG
* * * ** *
14966467 GAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGTGATG-GTACCCGACGAAGAAAA
706 GAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGTG-CCCCGACGAAGAAAA
* * * * * * *
14966531 ATACGGCACCAGCACATGCTCAAGACCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTT
770 ATGCAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-C--T--G-----
*
14966596 AGACTGGGAATGAACTCCGTATACTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCA
825 -G--T-----T----T--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
14966659 CGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCCCAAGCTGGGGATCTGCCGG
1 CGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTCGG
* * * * * * * ** * **
14966724 GTCCCCTTCTACGTGTTGCTGATCCTACAGTCATAACCCTCGG-TCTGTTGTAATCTTAGACTGG
66 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTC-GGTCCAATCTTAGACTGG
* * * * *
14966788 GAATGAACTCCGTATGCCTAAGCTAACCGACAAAACGAGCTGGCGGGCGGGCGGGCACTACGCCG
130 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGTCG
* *
14966853 ACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTC
195 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
14966918 ATATTTCTGCATGCCAATGCCATTTTTAT-GCTTGTAAATTCATACAATGGTCTCTTGAGCCTTC
260 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
14966982 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCCGATTTTTGAAACTTTTT-ACGG
325 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGA-GG
* * * *
14967046 TTCGAGATTTTTTAAAATTTTATCGGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
389 TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
14967111 TATTTTTGTTGGCATGCAT-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCA
454 TACTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
14967175 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAGCCTGT-AAATCTCA
519 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCA
14967239 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
584 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
14967304 AAGTACCAGCACCCATCGCACATCATGAGCGTACATCCCCCCCGACGCCCCCGATCGTCGGAACC
649 AAGTACCAGCACCCATCGCACATCATGTGCGTACA--CCCCCCGGC-CCCCCCATCGTCGGAACC
* * * * * * * ** *
14967369 CCATTG-TCATCGGTCAGGTTCTCCGACGATGCTCTGTCAATGGTACCCCGGTGAAGAAAAATAC
711 CCAATGCT-GTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT-GTGCCCCGACGAAGAAAAATGC
* * * * * * *
14967433 GGCACCAGCACATGTCCAAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGGTTTGATCTTAGAC
774 AGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGAC
* *
14967498 TAGGAATGAACTCTGTATG
839 TGGGAATGAACTCCGTATG
14967517 TTTAGACTAG
Statistics
Matches: 3659, Mismatches: 482, Indels: 362
0.81 0.11 0.08
Matches are distributed among these distances:
797 70 0.02
798 46 0.01
800 2 0.00
801 2 0.00
802 1 0.00
806 1 0.00
808 2 0.00
810 5 0.00
811 1 0.00
812 6 0.00
813 15 0.00
814 1 0.00
815 1 0.00
819 1 0.00
820 2 0.00
821 4 0.00
822 5 0.00
823 435 0.12
824 10 0.00
825 4 0.00
826 10 0.00
827 11 0.00
828 4 0.00
829 5 0.00
830 8 0.00
831 12 0.00
832 4 0.00
834 1 0.00
835 5 0.00
840 5 0.00
841 1 0.00
843 7 0.00
844 18 0.00
845 8 0.00
846 10 0.00
847 10 0.00
848 1 0.00
850 4 0.00
851 66 0.02
852 4 0.00
854 1 0.00
856 1 0.00
858 1 0.00
859 1 0.00
860 8 0.00
861 6 0.00
862 1 0.00
863 5 0.00
864 1 0.00
865 2 0.00
871 1 0.00
872 120 0.03
873 109 0.03
874 55 0.02
875 144 0.04
876 335 0.09
877 176 0.05
878 3 0.00
879 16 0.00
880 145 0.04
881 170 0.05
882 10 0.00
883 463 0.13
884 3 0.00
885 1 0.00
887 2 0.00
889 3 0.00
890 125 0.03
891 3 0.00
892 1 0.00
893 1 0.00
894 2 0.00
895 3 0.00
896 104 0.03
897 189 0.05
898 529 0.14
899 101 0.03
900 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
CGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGTCGG
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGAGGTT
CGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
CTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCCATCGTCGGAACCCCAAT
GCTGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGTGCCCCGACGAAGAAAAATGCAGCACCA
GCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCA
Found at i:14966622 original size:26 final size:26
Alignment explanation
Indices: 14966593--14966643 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14966583 CCGGTCCGAT
*
14966593 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAACGAACTCCGTATA
14966619 CTTAGACTGGGAACGAACTCCGTAT
1 CTTAGACTGGGAACGAACTCCGTAT
14966644 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATA
Found at i:14967528 original size:26 final size:26
Alignment explanation
Indices: 14967492--14967568 Score: 154
Period size: 26 Copynumber: 3.0 Consensus size: 26
14967482 CGGTTTGATC
14967492 TTAGACTAGGAATGAACTCTGTATGT
1 TTAGACTAGGAATGAACTCTGTATGT
14967518 TTAGACTAGGAATGAACTCTGTATGT
1 TTAGACTAGGAATGAACTCTGTATGT
14967544 TTAGACTAGGAATGAACTCTGTATG
1 TTAGACTAGGAATGAACTCTGTATG
14967569 CCTAAGTCAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.34
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCTGTATGT
Found at i:14975675 original size:26 final size:26
Alignment explanation
Indices: 14975646--14975698 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14975636 CCAGTCCGAT
14975646 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
14975672 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
14975698 C
1 C
14975699 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:14976570 original size:26 final size:26
Alignment explanation
Indices: 14976541--14976593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14976531 CCAGTCCGAT
*
14976541 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
14976567 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14976593 C
1 C
14976594 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14977322 original size:903 final size:901
Alignment explanation
Indices: 14974769--14990702 Score: 19381
Period size: 895 Copynumber: 17.9 Consensus size: 901
14974759 CCCATCCGAT
* * ** *
14974769 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAAGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14974834 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCAGGTCCTCCTCTGCGTACTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14974899 TGCTGCTGCAACCCTCGGGCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** *
14974964 TCGACGTAACGAGCGGGCAAGCAGGTGGGCGGGCACTACGCCGATCAAAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGC-GGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
14975029 GCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
14975094 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
14975159 GAGTCATTTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
14975224 TGAAAGGATTTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
14975289 AAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTA
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
14975354 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
14975419 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * **
14975484 CTTGTGCGCACA-CCCCCCGGCCCCTCCGATCGTCGGAACGCCAATGCCGCCTATCAGGTTCTCC
714 CATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * ** * * *
14975548 GGCGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCGCAG
778 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
14975613 CATGTGCTG-TAGCAACCCTTGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATG
843 CATGTGCTGCCA-CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14975672 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGAGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14975737 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTAGGGTCCCCTTC-GACGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG-CGTGCTGCCGATC
* * * * *
14975801 CTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14975866 ATCGACGAAACGA----GC-G-GGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGAGCGGGCGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
*
14975925 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGA-GTGCCAATGCCA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCA
14975989 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14976054 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTGT-GGGATTTTTCAAAATATTT
389 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT-TCGGGATTTTTTAAAATTTTT
* **
14976118 TCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
14976183 AAAATTTAGCCAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCACTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14976248 CAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * ** *
14976313 GTTCTCGAGGTTTGATGAGGAATAGGGGTCCAATATAAGGGCCAAGTACCAGTATTCATCACACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14976378 TCATGTGCGCAGACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCC
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * *
14976443 GGTGATGCTCCGACGATGGTGCCCCAATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
778 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
14976508 TATGTGCTACCACAACCCTCGATCCAGTCCGATCTTAGATTGGAAATGAACTCCGTATG
843 CATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14976567 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** * * *
14976632 CGGCCAGAGGGACGGGATGCATAAGCCGGGGATCAATCGGGTCCCCCTCTACGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * * *
14976697 TGCTACCGTAACTCTTGGTCCAGTCCGATATTAGATTAGGAATGAACTCCGTATGCCTAAGCCAT
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14976762 CCGACGAAACGAACGGGCAGGCTGGCGGGTGGGAATTACGTCGGCCAGAGA-AGCGGGATGTGCA
196 CCGACGAAACGAGCGGGC-GGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGA-CGGGATGCGCA
* * * *
14976826 AGCCGTGAATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATTCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
*
14976891 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
14976956 CGACTCCTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
14977021 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTTGTATTTTTTTTGGCATGCAC-AA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14977085 AAAATTTAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14977150 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14977215 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
14977280 TCATGTGCGCACACCCCCCCGACCCTTTCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTC
713 TCATGTGCGCACACCCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * ** * *
14977345 TGCCT-ATGCTCTGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACAAGCACATGCCCGAGCCC
777 CG-GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* ** * * * *
14977409 AGCATGTGCTGTCGGAACCCTCGGTCCGGTCCGATCTTATACTGGGAATGAATTTCGTATG
841 AGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14977470 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
14977535 CGGCCAGAGGGGCTGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTAG-GTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT-GCGTGCTGCCGATC
*
14977599 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14977664 ACCGACAGAAA-GA----------GCGGGCGGGCACTACG-CTGGCCAGAGAGACAGGATGCGTA
195 ACCGAC-GAAACGAGCGGGCGGCGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCA
** * * *
14977717 AGATGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
14977782 ATTTTT-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
14977846 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
14977911 TCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TTGGCATACACAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAA
* * *
14977975 AAAAAGTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14978040 TCAGACACTTTAATGGCCACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
14978105 AGTTCTC-AGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
647 AGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * *
14978169 CATCATGTGCGCACA-CCCCCTGACCCCCCGATCACCGGAACCCTAATGTCGTCTGTTAGGTTCT
711 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
14978233 CCAGTGATGCTCTGACGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCAAGCCC
776 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
14978298 AGCA-----TG----AA--CTCCGT--A-T--G--CTTAGACTAGGAATGAACT-C-----
841 AGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14978335 C---G--T----ATG----CC-TA----T--GTCAACCCATGAAACGAGTGTGCGGGTGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** *
14978380 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** ** * ** **
14978445 TGCTGCTGTGACCCTTAGTCCAGT-TCGATCTTAGACTAAGAATGAACTTTGTATGCCTAAGCCA
131 TGCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14978509 A-CGACGAAATGAACGGGCAGGCTGGCGGGCGGGCACTACATCGGCCAGAGAGACTGGATGCGCA
195 ACCGACGAAACGAGCGGGC-GGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * * * *
14978573 AGCCGTCGATCGATCGGGTGGTAAGTGGGTTTAGGTACATCTTCATACTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
14978638 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCGTGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
14978703 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGATCGAGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * **
14978768 TTGAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTGTGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14978833 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCTATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
14978898 CAAACACTTTAATGGCTACTGGCAGCAAACTTGGAAAATCTCAAATGCTCTTTCAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14978963 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
14979028 TCATGTGCACACACCCCCCCGGCCATCCCGATCGTCGGAACCTCAACGCCGCCGGTCAGGTTCTC
713 TCATGTGCGCACACCCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * *
14979093 TGGTGATGCTCTGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCA
777 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *** * ** * * *
14979158 GCGTGTGCTGTTGCAACCCTCAGTCTGGTCTGATCCTAGACTGGGAATAAACTCCGTATG
842 GCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14979218 CTTAGACTGGGAATGAACTCCATATGCCAAAGTCATCCCATGAAACGAGAGTGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * *
14979283 CGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGACCAGGTCCCCCTCTGCGTGCTGTCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14979348 TGGTGCTGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGTACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
14979413 CCAATGAAACGAGCGGGC-G-GGCGGGTTGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGC
196 CCGACGAAACGAGCGGGCGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
14979476 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
14979541 TTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
14979606 CTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTGCGGGATTTTTCAAAATATTTTT-
391 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTC
* * *
14979670 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
455 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
14979735 AATTAAGCCAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14979800 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
14979865 TCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-TAAGGGCCAAGTACCAGCACCCATTGCACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** *
14979929 ATGTGCGCACACCCCCCCGGCACCCCCGATCGTCGGAACCTTAATGCCATCGGTCAGGTTCTCCG
715 ATGTGCGCACACCCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * **
14979994 GCGATGCTCTGGGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
779 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
14980059 ATGTG-T-CATCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
844 ATGTGCTGC--CACAACCCTC-G----GTC----C----A----G--T---C--CG-AT-CTTAG
*
14980122 ACTAGGAATGAACTCCGTATG
881 ACTGGGAATGAACTCCGTATG
* * *
14980143 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
14980208 CGGCTAGAGGGGCGGGATGGGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGATGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
14980273 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14980338 CCGACGAAACGAGCGGGAGGGCGGGCAGGCGGGCATTACGCCGGTCAGAGAGACGAGATGCGGAA
196 CCGACGAAACGAGCGGG-CGGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * **
14980403 GCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGTGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
14980468 TTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** **
14980533 GACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTGGGGTTCTAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
14980598 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * * *
14980663 AAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGAGTTCCTATTTT
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* ** *
14980728 AGACATTTTAATGGCTACTGGCAGCAAACCAATAAAATCTCAAACGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14980793 TTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTGCCAGCACCCAAT-ACACA
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACA
* *
14980857 TCATGTGTGCACA--CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * * * * *
14980920 GACGATGCTCCGGCGATGGTGCCCCAACAAAGAAAAATGCGGCACCAGCACGTGCTCGAGCCCAG
778 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * ** ** * *
14980985 CATGTGCTGCCGCAACCCTCAGTCGGGTTTGATCTTAGACTGGGAATGAACTCTGCATG
843 CATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
14981044 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14981109 CGGCCAGAGGGGCGGCATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCTTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** *
14981174 T--TAGGCAAGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
131 TGCTA--C-CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
14981237 CAACCGACGAAACGAGCGGACGGGCAGACGGGCGGGCACTACGCCGGCCAGAGAGACGGG-TACG
193 CAACCGACGAAACGAGCGGGC-GGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * * * *
14981301 CAAGCTGTGGATCGATAGGGTAGTTGGTGGGTTTAAGCACATCTTCATATTTCTATGTGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
*
14981366 CCATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
14981431 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
386 GACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * ** * * *
14981496 TTTCAGAAGAAGTTTTGGTACCAAACTTGGTAGAAGTGATCCTTGTATTTCTGTTGGCATGCAGA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
14981561 AAAAAATTCCGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
14981626 TCCAGACACTTTAATTGCTACTGGCAGCAAACTTGTAAAATATCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
14981691 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
14981756 CATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTC
711 CATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
** * **
14981820 TCCGGCAATGCTCCCG-CGATGGTGGCCCGACGAAGAAAAATGCGGCATTAGCACATGCCCGAGC
775 TCCGGTGATGCT-CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * **
14981884 CCAGCATGTGCTGCCACAACCCTCGATTCAGTCCGATCTTAGACTGGGAATGAACTTTGTATG
839 CCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14981947 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGTACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
14982012 CGGCCAAAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCAAGTTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
14982077 TAC-AGCAGCAACACTCGGTTCGGTTTGATCTTAGACTGGGAATCAACAT-CGTATGCCTAAGCC
131 TGCTA-CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCC
* * * *
14982140 AACCGACGAAATGA----GC-G-GGTGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAA
194 AACCGACGAAACGAGCGGGCGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
14982199 GCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGCGCCAATGCAA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * * *
14982264 TTTTTATGGCCTGTAAATTCATACAATGGTCCCCTAAGCCTTTACATGAAGTTTCATGGCAAGAT
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
14982329 GACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
14982394 TGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
14982459 ATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14982524 AGACACTTTAATGGCTACTTGCAGCAAACCTGT---A----AAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14982582 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATCGTACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** *
14982647 CATGTGCGCACACCGCCCCCGGCCCCCCCGATCGTCGAAACCCCAACGCCACCGGTTAGGTTCTC
714 CATGTGCGCACACC-CCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
14982712 CAGCGATGCTACGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
777 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
14982777 GCATGTGCTGCCGCAACCCTCGGTCCCGTCCGATCTTAGGCTGGGAATGATCTCTGTATG
842 GCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
14982837 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG-TCCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAG
* * * * * * * * *
14982901 TCGGCCAGAGGGCCTGGATGCGCAAGTCAGGGATCGGTTGGGTCCCCCTCTACATGCTGCCGATT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * * *
14982966 CTGCTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAGTAAACTCCGTATGCCTAAGCTA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14983031 ACCGACGAAACGAGCGGGTGGGCCGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGG-CGG-CGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
14983096 AGTCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTTTGA-GTGCCAATGC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGC
* * *
14983160 CATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAGGCCATCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
14983225 ACGACTC-ATGT-T-TTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * * * *
14983287 TTCGGATGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCTTTCATAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14983352 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14983417 TCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
14983482 AGTTCTCGAGGTTTGATGAGGGATACGGGGCAAATATAAAGGCCAAGTACCAGCACCCATCCCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
14983547 CTCATGTGCACAC-CCCCCTGCTCGGCACCCCTGATCGCCGGAACCCCAATACCGCCGGTCA-G-
712 ATCATGTGCGCACACCCCC--C-CGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * **
14983609 ----C--T--T-CTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGTGCCAGCACATGCCCGAG
773 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
14983665 CCCAGCATGTGCTGCCACAACCATTGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATG
838 CCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14983729 CTTAGATTGGGAATGAACTCCGTACGCCTAAGTCAACGCAATCG-CACAAGCGTGCAGGCGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC-CCA-CGAAACGAGCGTGCGGGCGCTCA
* * * *
14983793 GCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTG-T-CATCA
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC--CG
* * ** * *
14983856 ATCCTGCTACTGTAACCCTCCATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAG
127 ATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
14983921 CCAATCGATGAAACGAGCGGGC-G-AGCGGGCGGGCGCTACGCCGGCCAGAGAGACGGGATGCGC
192 CCAACCGACGAAACGAGCGGGCGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
*
14983984 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* * *
14984049 CATTTTTATTGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
14984114 ATGACTCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTGCGATTAGGGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * ** * * * * *
14984179 TTTGGTAGGTTTTTTAGTCCCAAACTTGGTAGATGTGATCCTTGCATTTTAGTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14984244 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14984309 CCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
14984374 AGTTCTCCAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCACAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14984439 ATCATGTGCGTACACCCCCCCCCGGCCACCCCGATCACCGGAACCCCAACGCCGCCGGTCAGGTT
712 ATCATGTGCG--CACACCCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * * * * **
14984504 CTCCGGCGATGCTCTGGCGATGGAGCCCCGATGAAGAAAAATGCGACACCAGCACGTGGTCGAGC
774 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** *
14984569 CCAGTTTGTGCTGCTACAACCCTC-G----GT-C---C-----C-------G---TCCG-AT-
839 CCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14984606 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGTG-GGGTGTTCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * **
14984669 CGACCAGA-GGGCCGGATGCACAAGCCGAGGATCGATTGGGTCCCCCTCTGCATGCCACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
14984733 TGCTGCTGCAACCCTCAGTCTGATCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
14984798 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGC
196 CCGACGAAACGAGC--G--GGC-GGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* *
14984863 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
255 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
* *
14984928 GCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCA
320 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * * *
14984993 AGACGACTTGCTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGCATTTTTTAAAACT
385 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
14985058 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAC
450 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
14985123 AAAAAAATTTAACTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTTCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
14985188 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTTTTTAAGGGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * * *
14985253 TGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGCCCAAGTAGCAGCACCCAACGT
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * *
14985318 ACATCATGTGTGCACACCCCCCTGGCCCCGCCGATCACGGGAACCGCAATGCCGCCGGTCAAGTT
710 ACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
** **
14985383 AACC---G--G-T-----GATGGTGCCCCGACGAAGAAAAATTTGGCACCAGCACATGCCCGAGC
774 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* ** * *
14985437 CCAGCATGTGCTACCGTAACCCTCGGT-CTGATCCGATCTTAGACTGGTAATGAACTCCGTATG
839 CCAGCATGTGCTGCCACAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * *
14985500 CCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTAGGCACTAAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14985565 CGGCCAGAGGGGCGGGGTGTGCAAGCAGGGGATCGGCCGCGTCCCCCTCTGCATGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * ** * * * *
14985630 TGTTTTCC-CAACCCTCAGTCTGATCCAATCTTTGTCTGGGAATGAACTCCATATGCCTAGGCCA
131 TG-CTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
14985694 ACCGACGAAACTAGTGGGTGGGCGGATGGGTGGGCACTACGTCGGCCAGAGAAACGAGATGCGCA
195 ACCGACGAAACGAGCGGG-CGGCGG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * *
14985759 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGGC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
14985824 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGTAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
14985889 CGACTC-ATTT-T-TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * **
14985951 TCGGATGAAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCA-TGA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14986015 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTATCCCTATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14986080 CAGACACCTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14986145 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACC
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14986210 TCATGTGCG--CA----CCC--CCCCCCG--C-TCGGCACCCC--TGCCGTCGGTCA-G-----C
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * **
14986256 --T--TGCT-CGACGATGGTACCCTGGCGAAGAAAAATACGGCACCAGCA-ATGCTTGAGCCCAG
778 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * * * * *
14986315 CATGTGCTGCCGTAACCATTGGTCCGGTCTGATCTTAGACTGAGAATGAACTTCGTATG
843 CATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * * *
14986374 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCAATATCACTAGCGTGCAGGAGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAG
* * ** * * *
14986439 CCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGTCAAGTCCCCCTCTGCATGCCGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * *
14986504 CTGCTACCGTAACCCTCCATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14986569 ACCGACGGAACGAG-TGG-GGCAAGCGGACGGGCGCTACGTCGGCCAGAGAGACGGGATGCACAA
195 ACCGACGAAACGAGCGGGCGGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * *
14986632 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
14986697 TTTTTATTGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14986762 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
14986827 TGGAA-G-G---T-G--------TT--T-----TGATCCTTGTATTTTAGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
14986871 CAATTCAACCAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTCC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14986936 AAACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14987001 TTCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
14987066 AAAGTGCGCACACCCCCCCCGGCCACCCCGATCACCGGAACCCCAACGCCG-CTGGTCAGGTTCT
714 CATGTGCGCACA-CCCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCT
* * ** * * **
14987130 TCTGCAATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATGCGGCACCAGCACATGGTCGAGCCC
776 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** * * **
14987195 AGTTTGTGCTGCTACAACCCTCGGTCCCGTCCGATCTTAGACTGGGAATGAACTTTGTATG
841 AGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14987256 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGGGAGCGGGTGTTC-GA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * * ** *
14987320 CCGGCCAGAGGGCCGGGATGCACAAGTCGAGGATCGGTCGAGTCCCCCTCTACGTGCCACCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
14987385 CTGCTACTGCAACCCTCGGTCTGATCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
14987450 ACCGACGAAACGA----GC--AGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGAGCGGGCGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
14987509 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* *
14987574 TTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
14987639 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGG----------A-TTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
14987693 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
455 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
14987758 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
14987823 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCACAAATGCTCTTTAAGGGGGTGTGGGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14987888 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCAACGTACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * **
14987953 ATGTGCGCACA-CCCCCCGGCCCCGTCGATCACCGGAACCCCAATGCCACCGGTCAGG---T---
715 ATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* ** *
14988011 -T-A---TCGGACGATGGTGCCTTGACGAAGAAAAATCCGGCACCAGCACATGCCCGAGCCCAGC
779 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
14988071 ATGTGCTGCCGCAACCCTCAGTCTTA-TCCGATCTTAGACTGGTAATGAACTCCGTATG
844 ATGTGCTGCCACAACCCTCGGTC-CAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14988129 CCTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
14988194 CGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGCCGGGTCTCCCTCTGCATGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * * * *
14988259 TGCTGCCCCAACCCTCGGTCTGGTCCAATCTTTGTCTGGGAATGAACTCCGTATACCTAGGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14988324 CCGACGAAACGAGTGGGTGGACGGATGGGCAGGCACTACTTCGGCCAGAGAGACGGGATGCACAA
196 CCGACGAAACGAGCGGGCGG-CGG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * *
14988389 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
14988454 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
14988519 GACTCGTTTTCTATTTTTCATAATTTTTTAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTT
* * * * *
14988584 TCGGAAGGAGTTTTGACCCCAAACATGGTAGACGTGATCATTGTCTGTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
14988649 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
14988714 TAGGCACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14988779 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCGCA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14988844 TCATGTGCGCACA-CCCCCCGACCCCCCCGATCACCGGAACCCCAA-----T--GTC--G---TC
713 TCATGTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* *
14988896 C---G--G---C-A--AT-GTGCCCC-AGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
777 CGGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
14988948 AGCATGTGCTGCCATAACCCTCGGTCCAGTCTGATCTTAAATTGGGAATGAACTCCATATG
841 AGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
14989009 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAGA-CCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA-ACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14989073 TCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGATCGGGTCCCTCTCTACGTGCTGCCGATT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* *** * ** *
14989138 CTACTGGTGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * *
14989203 ACTAATGAAACGAGTGTGCGGGTAGGCGGGCGGGCACTACGCCGGCCAGAGAGATC-GGATGCGC
195 ACCGACGAAACGAGCGGGC-GG-CGGCGGGCGGGCACTACGTCGGCCAGAGAGA-CGGGATGCGC
* *
14989267 AAACCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* * * * *
14989332 CATTTTCATGGCTTGTAAATTGATACAATGGTCCCTTATGCCTTAACGTGAAGTTTTATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
14989397 ACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTC-GGATTTTTTTAAATGTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TT
* * *
14989461 TTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGTATGCA-A
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
14989524 AAAAAATTCAGCGAAAAACTTG-AGCTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCA
516 AAAAAATTCAGCTAAAAACTCGAAG-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
14989588 TTTCAGACACTTTAATAGCTACTAGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
14989653 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
14989718 ACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAAT---G-C---CA----
710 ACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
14989772 -TCC------G----G-CGATGGTGCCCCGACGAAAAAAAATGTGACACCAGCGCCTGCCCGAGC
774 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * ** * * * ** *
14989825 CAAGCTTGTGCTATCGCAACCCTCGATCCATTTTGATCTTAGACTGGGAATGAACTCCATATG
839 CCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14989888 CTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAAGCCACGAAACGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
14989953 CGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCAGCCGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14990018 TGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
14990083 CCGACGAAACGAGC-GGTTG-GGCGGGCGGGCATTACGTCTGCCAGAGAGACAGGATGCACAAGC
196 CCGACGAAACGAGCGGGCGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
14990146 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTACGTGCCAATACCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * ** *
14990211 TTTATGGCTTGAAAATTAATACAATCATCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14990276 CTCGTTTTCTATTTTTCACGATTTTCAAACCATTTTACAGTTCGAGATTTTTTTAAAATTTTTTC
391 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTC
*
14990341 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
455 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA
* * *
14990406 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTATGTGACCATTTGAAAAAAGTGTCCCCATTTT
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* ***
14990471 AGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGACAGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14990536 TTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCATGTACCAGCACTCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
14990601 CATGTGCGCACA-CCCCCCGACCCCCCCGATCGCCGAAACCCTAATGCCGTCGATCAAGTTCTCC
714 CATGTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* *
14990665 GGTGATGCTCCGATGATGGTG-CCCTAGCGAAGAAAAAT
778 GGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAAT
14990703 TTTACACCGG
Statistics
Matches: 13042, Mismatches: 1606, Indels: 768
0.85 0.10 0.05
Matches are distributed among these distances:
843 4 0.00
844 8 0.00
845 139 0.01
847 1 0.00
851 2 0.00
852 2 0.00
854 24 0.00
855 187 0.01
856 107 0.01
857 359 0.03
858 9 0.00
859 92 0.01
860 1 0.00
861 1 0.00
862 4 0.00
864 4 0.00
865 14 0.00
866 2 0.00
867 2 0.00
868 67 0.01
869 4 0.00
870 18 0.00
871 19 0.00
872 164 0.01
873 387 0.03
874 126 0.01
875 425 0.03
876 217 0.02
877 324 0.02
878 137 0.01
879 521 0.04
880 473 0.04
881 844 0.06
882 103 0.01
883 6 0.00
884 42 0.00
885 3 0.00
886 221 0.02
887 2 0.00
888 101 0.01
889 441 0.03
890 609 0.05
891 303 0.02
892 475 0.04
893 591 0.05
894 78 0.01
895 1338 0.10
896 31 0.00
897 113 0.01
898 165 0.01
899 164 0.01
900 428 0.03
901 588 0.05
902 477 0.04
903 1251 0.10
904 26 0.00
908 1 0.00
910 1 0.00
916 1 0.00
918 1 0.00
921 1 0.00
922 3 0.00
923 1 0.00
924 2 0.00
925 209 0.02
927 111 0.01
928 14 0.00
929 414 0.03
930 37 0.00
931 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14977483 original size:26 final size:26
Alignment explanation
Indices: 14977444--14977496 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14977434 CCGGTCCGAT
* * * *
14977444 CTTATACTGGGAATGAATTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14977470 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14977496 C
1 C
14977497 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14979230 original size:26 final size:26
Alignment explanation
Indices: 14979194--14979244 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14979184 GGTCTGATCC
*
14979194 TAGACTGGGAATAAACTCCGTATGCT
1 TAGACTGGGAATAAACTCCATATGCT
*
14979220 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATAAACTCCATATGC
14979245 CAAAGTCATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCATATGCT
Found at i:14980129 original size:26 final size:26
Alignment explanation
Indices: 14980091--14980169 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
14980081 CCAGTCTGAT
*
14980091 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14980117 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14980143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14980169 C
1 C
14980170 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14981070 original size:26 final size:26
Alignment explanation
Indices: 14981018--14981070 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14981008 CGGGTTTGAT
**
14981018 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
14981044 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
14981070 C
1 C
14981071 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:14981971 original size:26 final size:26
Alignment explanation
Indices: 14981921--14981973 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14981911 TCAGTCCGAT
**
14981921 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14981947 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14981973 C
1 C
14981974 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14982847 original size:26 final size:26
Alignment explanation
Indices: 14982811--14982863 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14982801 CCCGTCCGAT
* * *
14982811 CTTAGGCTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14982837 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14982863 C
1 C
14982864 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14983739 original size:26 final size:26
Alignment explanation
Indices: 14983703--14983752 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14983693 CCAGTCTGAT
14983703 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
14983729 CTTAGATTGGGAATGAACTCCGTA
1 CTTAGATTGGGAATGAACTCCGTA
14983753 CGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:14985505 original size:26 final size:26
Alignment explanation
Indices: 14985476--14985529 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14985466 GATCCGATCT
*
14985476 TAGACTGGTAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14985502 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14985528 TA
1 TA
14985530 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:14986387 original size:26 final size:26
Alignment explanation
Indices: 14986348--14986400 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14986338 CCGGTCTGAT
*
14986348 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14986374 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14986400 C
1 C
14986401 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14987280 original size:26 final size:26
Alignment explanation
Indices: 14987230--14987282 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14987220 CCCGTCCGAT
**
14987230 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14987256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14987282 C
1 C
14987283 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14988134 original size:26 final size:26
Alignment explanation
Indices: 14988105--14988158 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
14988095 TATCCGATCT
14988105 TAGACT-GGTAATGAACTCCGTATGCC
1 TAGACTAGG-AATGAACTCCGTATGCC
*
14988131 TAGACTAGGAATGAACTCTGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
14988157 TA
1 TA
14988159 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCC
Found at i:14988877 original size:893 final size:879
Alignment explanation
Indices: 14978301--14990652 Score: 13436
Period size: 881 Copynumber: 13.9 Consensus size: 879
14978291 CAAGCCCAGC
* * * * *
14978301 ATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGTG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * *
14978366 TGCGGGTGCTAAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTA
* * * * ** ** ** ** **
14978431 CGTGCTGCCGATTCTGCTGCTGTGACCCTTAGTCCAGT-TCGATCTTAGACTAAGAATGAACTTT
131 CATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCC
* ** *
14978495 GTATGCCTAAGCCAA-CGACGAAATGAACGGGCAGGCTGGCGGGCGGGCACTACATCGGCCAGAG
195 GTATGCCTAAGCCAACCGACGAAACG-A-GGG--GGGAGGCGGGCGGGCACTACGTCGGCCAGAG
* * * * * * *
14978559 AGACTGGATGCGCAAGCCGTCGATCGATCGGGTGGTAAGTGGGTTTAGGTACATCTTCATACTTC
256 AGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
14978624 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAA
321 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * * *
14978689 GTTTCGTGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGATCGAGAT
386 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCG-GAT
* *
14978754 TTTTTAAAATTTTTT-TGAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
450 TTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
** * *
14978818 GTTGGTGTGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAA
514 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * * *
14978883 AAAGTGTCCCTATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGGAAAATCTCAAATGCTC
579 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
14978948 TTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
644 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * ** ** * *
14979013 AGCACCCATCGTACATCATGTGCACACACCCCCCCGGCCATCCCGATCGTCGGAACCTCAACGCC
709 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCACCGGAACCCCAA---T
* *
14979078 GCCGGTCAGGTTCTCTGGTGATGCTCTGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
770 GCCAGTC--G-T-TC----G--G--C----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *** * ** * *
14979143 ACATGCCCAAGCCCAGCGTGTGCTGTTGCAACCCTCAGTCTGGTCTGATCCTAGACTGGGA
819 ACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCATCCGATCTTAGACTGGGA
* * * * * * *
14979204 ATAAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCATCCCATGAAACGAGAG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
14979269 TGTGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGACCAGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTA
* * * * * * * * * *
14979334 CGTGCTGTCAATCTTGGTGCTGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGTACTCCG
131 CATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * ** * *
14979399 TATGCCTAAGCCAACCAATGAAACGAGCGGGCG-GGCGGGTTGGCACTACGCCGGCTAGAGAGAC
196 TATGCCTAAGCCAACCGACGAAACGAG-GGGGGAGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
*
14979463 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
260 GGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
* *
14979528 TGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGGAGTTT
325 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
14979593 CATGGCAAGACGACTCGTTTTCTATTTTTCA-AGATTTTTGAAACTTTTTACGGTGCGGGATTTT
390 CATGGCAAGACGACTCGTTTTCTATTTTTCACA-ATTTTTAAAACTTTTTACGGTTC-GGATTTT
* * * * *
14979657 TCAAAATATTTTT-GGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT
453 TTAAAAT-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * *
14979721 GGCATGCACAAAAAAATTAAGCCAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAA
517 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
14979786 GTGTCCCCGTTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
582 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
14979851 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-TAAGGGCCAAGTACCAGC
647 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * ** **
14979915 ACCCATTGCACATCATGTGCGCACACCCCCCCGGCACCCCCGATCGTCGGAACCTTAATGCCATC
712 ACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCA--
14979980 GGTCAGGTTCTCCGGCGATGCTCTGGGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
774 -GTC--G-T-T----CG--G--C----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
14980045 TGCCCGAGCCCAGCATGTG-T-CATCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAA
822 TGCCCGAGCCCAGCATGTGCTGC--CACAA-CC-C--T-C-G---G-TC-T---C-----AT---
*
14980108 CTTCGTATGCTTAGACTAGGA
863 C--CG-AT-CTTAGACTGGGA
* *
14980129 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * ** *
14980194 TGCGGGCACTCAACCGGCTAGAGGGGCGGGATGGGCAAGCCGGGGATCGATCGGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTA
** * * * *
14980259 TGTGATGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
131 CATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
14980324 TATGCCTAAGCCAACCGACGAAACGAGCGGGAGGGCGGGCAGGCGGGCATTACGCCGGTCAGAGA
196 TATGCCTAAGCCAACCGACGAAACGA--GGG-GGG-AGGCGGGCGGGCACTACGTCGGCCAGAGA
* ** * *
14980389 GACGAGATGCGGAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCT
257 GACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*** *
14980454 GTGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
322 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * ** *
14980519 TTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTGGGGTTCTAGATT
387 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTC-GGATT
*
14980584 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
451 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
14980649 TGGCGTGCACAAAAAAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAA
516 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * * ** *
14980714 AGAGTTCCTATTTTAGACATTTTAATGGCTACTGGCAGCAAACCAATAAAATCTCAAACGCTCTT
581 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
14980779 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTGCCAG
646 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
14980844 CACCCAAT-ACACATCATGTGTGCACA-CCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGC
711 CACCC-ATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAAT---G-
* *
14980906 CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAACAAAGAAAAATGCGGCACCAGCAC
771 C---CA-G---T----CG-T--T-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * *** **
14980971 GTGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCGGGTTTGATCTTAGACTGGGA
821 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCATCCGATCTTAGACTGGGA
*** *
14981030 ATGAACTCTGCATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** * * ** *
14981095 TGTAGGCGCTCAACCGGCCAGAGGGGCGGCATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTA
* * * * **
14981160 CTTGCTGCCAATCCT--TAGGCAAGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACT
131 CATGCTGCCGATCCTGCTA--C-CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * *
14981223 CTGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCAGACGGGCGGGCACTACGCCGGCCAG
193 CCGTATGCCTAAGCCAACCGACGAAACGAG-GG--GGG-AGGCGGGCGGGCACTACGTCGGCCAG
* * * * * *
14981288 AGAGACGGG-TACGCAAGCTGTGGATCGATAGGGTAGTTGGTGGGTTTAAGCACATCTTCATATT
254 AGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** *
14981352 TCTATGTGCCAATGCCATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
319 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
14981417 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGG
384 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTC-GG
* ** * *
14981482 ATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGTACCAAACTTGGTAGAAGTGATCCTTGTATTTC
448 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * *
14981547 TGTTGGCATGCAGAAAAAAATTCCGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
513 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* ** * * *
14981612 AAAAGTGTCCTCATTCCAGACACTTTAATTGCTACTGGCAGCAAACTTGTAAAATATCAAATGCT
578 AAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
14981677 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
643 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * ** *
14981742 CAGCACTCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGAAACCCCAATGCC
708 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAAT---
* * **
14981807 GTCGGTCAGGTTCTCCGGCAATGCTCCCGCGATGGTGGCCCGACGAAGAAAAATGCGGCATTAGC
770 G-C---CA-G---T-C-G---T--T-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
*
14981872 ACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGAT-TCAGTCCGATCTTAGACTGGGA
819 ACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCA-TCCGATCTTAGACTGGGA
*** * *
14981933 ATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * *
14981998 TACAGGCGCTCAGCCGGCCAAAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTA
* * * * * * * *
14982063 CAAGTTGCTGATCCTAC-AGCAGCAACACTCGGT-TCGGTTTGATCTTAGACTGGGAATCAACAT
131 CATGCTGCCGATCCTGCTA-CCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAAC-T
* * * * *
14982126 -CGTATGCCTAAGCCAACCGACGAAATGA---GCG-GGTGGGCGGGCACTACGCCGGCCAGAGAA
193 CCGTATGCCTAAGCCAACCGACGAAACGAGGGGGGAGGCGGGCGGGCACTACGTCGGCCAGAGAG
* *
14982186 ACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
258 ACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
*** * * * * *
14982251 TGCGCCAATGCAATTTTTATGGCCTGTAAATTCATACAATGGTCCCCTAAGCCTTTACATGAAGT
323 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * **
14982316 TTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTTCGGGATTT
388 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTC-GGATTT
** * *
14982381 TTTAAAATTTTTTTGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
452 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
14982446 GGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
517 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
14982511 GTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGT---A----AAATGCTCTTT
582 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
14982569 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGC
647 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * ** * *
14982634 ACCCATCGTACATCATGTGCGCACACCGCCCCCGGCCCCCCCGATCGTCGAAACCCCAACGCCAC
712 ACCCATCGCACATCATGTGCGCACA-C-CCCCCGACCCCCCCGATCACCGGAACCCCAATG---C
14982699 CGGTTAGGTTCTCCAGCGATGCTACGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
772 C----A-G---T----CG-T--T-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * *
14982764 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCCGTCCGATCTTAGGCTGGGA
821 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCATCCGATCTTAGACTGGGA
* **
14982823 ATGATCTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * **
14982888 TGCGGGTG-TCCAGTCGGCCAGAGGGCCTGGATGCGCAAGTCAGGGATCGGTTGGGTCCCCCTCT
66 TGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCT
* * ** * *
14982952 ACATGCTGCCGATTCTGCTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAGTAAACTCC
130 ACATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
*
14983017 GTATGCCTAAGCTAACCGACGAAACGAGCGGGTGG-GCCGACGGGCGGGCACTACGTCGGCCAGA
195 GTATGCCTAAGCCAACCGACGAAACGAG-GGG-GGAG--G-CGGGCGGGCACTACGTCGGCCAGA
* * *
14983081 GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTT
255 GAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * * *
14983146 TTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAGGCCATCACGTG
320 CT-ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * *
14983210 AAGTTTCATGGCAAGACGACTC-ATGT-T-TTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGG
384 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGG-TTCGG
* * * *
14983272 ATTTTTTAAAATTTTTTCGGATGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTT
448 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * * *
14983337 TTTTGGCTTTCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
513 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
14983402 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCT
578 AAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * *
14983467 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCAAATATAAAGGCCAAGTAC
643 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * * * *
14983532 CAGCACCCATCCCACCTCATGTGCACACCCCCCTGCTCGGCACCCCTGATCGCCGGAACCCCAAT
708 CAGCACCCATCGCACATCATGTGCGCACACCCC--C-CGACCCCCCCGATCACCGGAACCCCAAT
* * * * **
14983597 ACCGCCGGTCAGCTTCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGTGCCAGCACATGCCC
770 ---GCCAGTC-G--T-T-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
14983662 GAGCCCAGCATGTGCTGCCACAACCATTGGTC-CAGTCTGATCTTAGATTGGGA
827 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCA-TCCGATCTTAGACTGGGA
* * * * * *
14983715 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTACGCCTAAGTCAACGCAATCG-CACAAG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC-CCA-CGAAACGAG
* * * * *
14983779 CGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGTCGGGTCCCCCTC
64 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTC
* * * * ** * *
14983844 TACGTG-T-CATCAATCCTGCTACTGTAACCCTCCATCCGGTTTGATCTTAGACTGGGAATGAAC
129 TACATGCTGC--CGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *
14983907 TCCGTTTGCCTAAGCCAATCGATGAAACGAGCGGGCGA-GCGGGCGGGCGCTACGCCGGCCAGAG
192 TCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGGGAGGCGGGCGGGCACTACGTCGGCCAGAG
* *
14983971 AGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
256 AGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
14984036 TACGTGCCAATGCCATTTTTATTGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAA
321 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
14984101 GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA-AGATTTTTAAAACTTTTTGCGATTAGGGA
386 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA-ATTTTTAAAACTTTTTACGGTT-CGGA
** * ** * * * * *
14984165 TTTTTTAAAATTTTTTTGGTAGGTTTTTTAGTCCCAAACTTGGTAGATGTGATCCTTGCATTTTA
449 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
*
14984230 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAA
514 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
** *
14984295 AAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTC
579 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
14984360 TTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACC
644 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
14984425 AGCACCTATCACACATCATGTGCGTACACCCCCCCCCGGCCACCCCGATCACCGGAACCCCAACG
709 AGCACCCATCGCACATCATGTGCG--CA-CACCCCCCGACCCCCCCGATCACCGGAACCCCAA--
* * * *
14984490 CCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGAGCCCCGATGAAGAAAAATGCGACACCA
769 -TG-C---CA-G---T----CG-T--TC-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* ** ** *
14984555 GCACGTGGTCGAGCCCAGTTTGTGCTGCTACAACCCTCGG--TC--CCG-TC-----C-----
817 GCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCATCCGATCTTAGACTGGGA
14984603 --G--------AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * * *** *
14984656 TG-GGGTGTTCGGCCGACCAGA-GGGCCGGATGCACAAGCCGAGGATCGATTGGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTA
** * * * * *
14984719 CATGCCACCGATCCTGCTGCTGCAACCCTCAGTCTGATCTGATCTGAGACTGGGAATGAACTCCG
131 CATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* *
14984784 TATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCGGGCACTACGTCGACCA
196 TATGCCTAAGCCAACCGACGAAACGA----G--GG-GGG-AGGCGGGCGGGCACTACGTCGGCCA
*
14984849 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
253 GAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
14984914 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACTT
318 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * ** * *
14984979 GAAGTTTCATGGCAAGACGACTTGCTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGG
383 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGG
*
14985044 CATTTTTTAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
448 -ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
14985109 TTATTGGCATGCACAAAAAAATTTAACTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGA
512 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
14985174 AAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGC
577 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * * *
14985239 TTTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGCCCAAGTA
642 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * * * *
14985304 GCAGCACCCAACGTACATCATGTGTGCACACCCCCCTGGCCCCGCCGATCACGGGAACCGCAATG
707 CCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCCGATCACCGGAACCCCAAT-
* * **
14985369 CCGCCGGTCAAGTTAACCGGTGATGGTGCCCCGACGAAGAAAAATTTGGCACCAGCACATGCCCG
770 --GCCAGTC--GTT---CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* ** * *
14985434 AGCCCAGCATGTGCTACCGTAACCCTCGGTCTGATCCGATCTTAGACTGGTA
828 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTCATCCGATCTTAGACTGGGA
* * *
14985486 ATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** * * * * * *
14985551 TGTAGGCACTAAGTCGGCCAGAGGGGCGGGGTGTGCAAG-CAGGGGATCGGCCGCGTCCCCCTCT
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGCCGGGTCCCCCTCT
* * * * * * ** * *
14985615 GCATGCTGCCGATCTTGTTTTCC-CAACCCTCAGTCTGATCCAATCTTTGTCTGGGAATGAACTC
130 ACATGCTGCCGATCCTG-CTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * *
14985679 CATATGCCTAGGCCAACCGACGAAACTAGTGGGTGGGCGGATGGGTGGGCACTACGTCGGCCAGA
194 CGTATGCCTAAGCCAACCGACGAAAC--GAGGG-GGGAGG-CGGGCGGGCACTACGTCGGCCAGA
* * * *
14985744 GAAACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
255 GAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * *
14985809 CTGCATTCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGA
320 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * *
14985874 AGTTTCATGGTAAGACGACTC-ATTT-T-TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGA
385 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTC-GGA
* * * *
14985936 TTTTTTAAAATTTTTTCGGATGAAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTT
449 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * ** *
14986001 TTTGGCATTCA-TGAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAA
514 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * * *
14986065 AAAGTATCCCTATTTCAGACACCTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTC
579 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
14986130 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
644 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * * * * * *
14986195 AGCACCCATCCCACCTCATGTGCGCAC-CCCCCC--CCGCTCGGCA-CCCCTG--CCGTC--GGT
709 AGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCG-ATCACCGGAACC-CCAATGC
* * * * * * * **
14986252 CAGCTTGCTCGACGATGGTACCCTGGCGAAGAAAAATACGGCACCAGCA-ATGCTTGAGCCCAGC
772 CAG-TCGTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * * * * *
14986316 ATGTGCTGCCGTAACCATTGGTC-CGGTCTGATCTTAGACTGAGA
836 ATGTGCTGCCACAACCCTCGGTCTC-ATCCGATCTTAGACTGGGA
* * * ** * *
14986360 ATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCAATATCACTAGC
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGC
* * * * * * * **
14986425 GTGCAGGAGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGTCAAGTCCCCCTCT
65 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCT
* * * * ** * *
14986490 GCATGCCGTCGATCCTGCTACCGTAACCCTCCATCCGGTTTGATCTTAGACTGGGAATGAACTCC
130 ACATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
* * * * * *
14986555 GTTTGCCTAAGCCAACCGACGGAACGAGTGGGGCAAGCGGACGGGCGCTACGTCGGCCAGAGAGA
195 GTATGCCTAAGCCAACCGACGAAACGAG-GGGGGAGGCGGGCGGGCACTACGTCGGCCAGAGAGA
* *
14986620 CGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
259 CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* * *
14986685 ATGCCAATGCCATTTTTATTGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
324 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
14986750 TCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCGAGATTTT
389 TCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCG-GATTTT
** *
14986815 TTAAAATTTTTTTGGAA-G-G---T-G--------TT--T-----TGATCCTTGTATTTTAGTTG
453 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
14986859 GCATGCACAAAACAATTCAACCAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAG
518 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
** * *
14986924 TGTCCCCATTCCAAACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
583 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
14986989 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCA
648 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
14987054 CCCATCACACATAAAGTGCGCACACCCCCCCCGGCCACCCCGATCACCGGAACCCCAACGCCGCT
713 CCCATCGCACATCATGTGCGCACA--CCCCCCGACCCCCCCGATCACCGGAACCCCAA------T
* *
14987119 GGTCAGGTTCTTCTGCAATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATGCGGCACCAGCACA
770 -GCCA-G----TC-G---T--T-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
** ** * * *
14987184 TGGTCGAGCCCAGTTTGTGCTGCTACAACCCTCGGTCCCGTCCGATCTTAGACTGGGA
822 TGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCATCCGATCTTAGACTGGGA
*** *
14987242 ATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGGG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
14987307 AGCGGGTGTTC-GACCGGCCAGAGGGCCGGGATGCACAAGTCGAGGATCGGTCGAGTCCCCCTCT
66 TGCGGGCGCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCT
* ** * * * *
14987371 ACGTGCCACCAATCCTGCTACTGCAACCCTCGGTCTGATCTGATCTTATACTGGGAATGAACTCC
130 ACATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
*
14987436 GTATGCCTAAGCCAACCGACGAAACGA----GCAGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
195 GTATGCCTAAGCCAACCGACGAAACGAGGGGGGAGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
* *
14987497 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
260 GGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
* *
14987562 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACTTGAAGTTT
325 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** *
14987627 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGG------
390 CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTC-GGATTTTT
14987686 ----A-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
454 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
14987746 CATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
519 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
14987811 GTTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCACAAATGCTCTTTAA
584 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
14987876 GGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCAC
649 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * **
14987941 CCAACGTACATCATGTGCGCACACCCCCCGGCCCCGTCGATCACCGGAACCCCAATGCCACCGGT
714 CCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCA---GT
** *
14988006 CAGGTTATCGGACGATGGTGCCTTGACGAAGAAAAATCCGGCACCAGCACATGCCCGAGCCCAGC
776 C--G-T-TCGG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
14988071 ATGTGCTGCCGCAACCCTCAGTCTTATCCGATCTTAGACTGGTA
836 ATGTGCTGCCACAACCCTCGGTCTCATCCGATCTTAGACTGGGA
* * * * *
14988115 ATGAACTCCGTATGCCTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCG
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * *
14988180 TGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG-CAGGGGATCGGCCGGGTCTCCCTCT
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGCCGGGTCCCCCTCT
* * * * * ** * *
14988244 GCATGCTGTCGATCTTGCTGCCCCAACCCTCGGTCTGGTCCAATCTTTGTCTGGGAATGAACTCC
130 ACATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
* * * * *
14988309 GTATACCTAGGCCAACCGACGAAACGAGTGGGTGGACGGATGGGCAGGCACTACTTCGGCCAGAG
195 GTATGCCTAAGCCAACCGACGAAACGAG-GGG-GGA-GG-CGGGCGGGCACTACGTCGGCCAGAG
14988374 AGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
256 AGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
14988439 TGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
321 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
14988504 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTTAAACTTTTTACGGTTCAGGAT
386 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTC-GGAT
* * * * * *
14988569 TTTTTAAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACATGGTAGACGTGATCATTGTCTGTTT
450 TTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
14988634 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
514 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
14988699 AAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTC
579 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
14988764 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
644 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
14988829 AGCACCCATTGCGCATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAAT----
709 AGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCA
* * * *
14988890 GTCGTCCGGCAAT-GTGCCCC-AGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCAT
774 GTCGTTCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
14988953 GTGCTGCCATAACCCTCGGTC-CAGTCTGATCTTAAATTGGGA
838 GTGCTGCCACAACCCTCGGTCTCA-TCCGATCTTAGACTGGGA
*
14988995 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAGA-CCACGAAACGAGC
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA-ACCCACGAAACGAGC
* * * ** *
14989059 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGATCGGGTCCCTCTCT
65 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCT
* * * *** * * *
14989124 ACGTGCTGCCGATTCTACTGGTGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCT
130 ACATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
** * *
14989189 GTATGCCTAAGCCAACTAATGAAACGAGTGTGCGGGTAGGCGGGCGGGCACTACGCCGGCCAGAG
195 GTATGCCTAAGCCAACCGACGAAACGAG-G-G-GGG-AGGCGGGCGGGCACTACGTCGGCCAGAG
* * *
14989254 AGATC-GGATGCGCAAACCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTT
256 AGA-CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * * *
14989318 CTACGTGCCAATGCCATTTTCATGGCTTGTAAATTGATACAATGGTCCCTTATGCCTTAACGTGA
320 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* *
14989383 AGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGAT
385 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGGAT
* * * *
14989448 TTTTTTAAATGTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTT
450 TTTTTAAAAT-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
14989512 GTTGGTATGCA-AAAAAAATTCAGCGAAAAACTTG-AGCTGTACAATATTTTGTGACCATTTGAA
514 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG-TGTACAAGATTTTGTGACCATTTGAA
* * * *
14989575 AAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTAGCAGTAAACCTGTAAAATCTCAAATGCT
578 AAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
14989640 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
643 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
14989705 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGC
708 CAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCACCGGAACCCCAATGC
* * * * * * *
14989770 CA-TC---CGGCGATGGTGCCCCGACGAAAAAAAATGTGACACCAGCGCCTGCCCGAGCCAAGCT
772 CAGTCGTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * **
14989831 TGTGCTATCGCAACCCTCGATC-CATTTTGATCTTAGACTGGGA
837 TGTGCTGCCACAACCCTCGGTCTCA-TCCGATCTTAGACTGGGA
* * * *
14989874 ATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAAGCCACGAAACGAGCA
1 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * *
14989939 TGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCAGCCGGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTA
* * * * * *
14990004 CATGCTGTCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATAAACTCCG
131 CATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
** * *
14990069 TATGCCTAAGCCAACCGACGAAACGAGCGGTTG-GGCGGGCGGGCATTACGTCTGCCAGAGAGAC
196 TATGCCTAAGCCAACCGACGAAACGAG-GGGGGAGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
* * * * *
14990133 AGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTACG
260 GGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
* * * ** *
14990198 TGCCAATACCATTTTTATGGCTTGAAAATTAATACAATCATCCCTTAAGCCTTCACGCGAAGTTT
325 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * *
14990263 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAACCATTTTACAGTTCGAGATTTTT
390 CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCG-GA-TTTT
14990328 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
453 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
14990393 GCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTATGTGACCATTTGAAAAAA
518 GCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
14990458 GTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTT
582 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*** * * *
14990523 AAGACAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCATGTACCAGC
647 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
14990588 ACTCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGAAACCCTAATGCC-GTC
712 ACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCAGTC
14990652 G
777 G
14990653 ATCAAGTTCT
Statistics
Matches: 9856, Mismatches: 1258, Indels: 694
0.83 0.11 0.06
Matches are distributed among these distances:
854 24 0.00
855 190 0.02
858 6 0.00
859 2 0.00
860 9 0.00
861 2 0.00
862 2 0.00
865 8 0.00
866 3 0.00
867 2 0.00
868 62 0.01
869 3 0.00
870 7 0.00
871 3 0.00
872 167 0.02
873 385 0.04
874 128 0.01
875 412 0.04
876 219 0.02
877 301 0.03
878 147 0.01
879 505 0.05
880 466 0.05
881 840 0.09
882 104 0.01
883 4 0.00
884 31 0.00
885 9 0.00
886 223 0.02
887 1 0.00
888 105 0.01
889 353 0.04
890 415 0.04
891 12 0.00
892 456 0.05
893 597 0.06
894 72 0.01
895 551 0.06
896 21 0.00
897 108 0.01
898 163 0.02
899 150 0.02
900 424 0.04
901 577 0.06
902 263 0.03
903 528 0.05
904 11 0.00
906 1 0.00
908 2 0.00
909 2 0.00
910 1 0.00
917 2 0.00
918 2 0.00
921 1 0.00
922 1 0.00
923 2 0.00
924 2 0.00
925 205 0.02
926 4 0.00
927 80 0.01
928 12 0.00
929 413 0.04
930 38 0.00
931 4 0.00
932 2 0.00
933 1 0.00
934 2 0.00
935 3 0.00
937 2 0.00
938 2 0.00
939 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (879 bp):
ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTA
CATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGGGGGGAGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
GGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGGATTTTTTA
AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCAGTCGTTC
GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
ACAACCCTCGGTCTCATCCGATCTTAGACTGGGA
Found at i:14989012 original size:26 final size:26
Alignment explanation
Indices: 14988983--14989034 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14988973 CCAGTCTGAT
*
14988983 CTTAAATTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
14989009 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
14989035 GCTAAGTCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14989892 original size:26 final size:26
Alignment explanation
Indices: 14989862--14989917 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14989852 CCATTTTGAT
14989862 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
**
14989888 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14989914 CTTA
1 CTTA
14989918 AGTCAAGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.