Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 82 of 131
Found at i:14990094 original size:879 final size:874
Alignment explanation
Indices: 14986839--14990648 Score: 4852
Period size: 879 Copynumber: 4.3 Consensus size: 874
14986829 GAAGGTGTTT
* * * *
14986839 TGATCCTTGTATTTTAGTTGGCATGCACAAAACAATTCAACCAAAAACTCGAAGTGTACAAGATT
1 TGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* ** *
14986904 TTCTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGCCAGCAAACCTGT
65 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG-CAGCAAACCTGT
*
14986969 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATATGGGGCCAAT
129 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
14987034 ATAAGGGCCAAGTACCAGCACCCATCACACATAAAGTGCGCACACCCCCCCCGGCCACCCCGATC
194 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGACCCCCCCGATC
*
14987099 ACCGGAACCCCAACGCCGCTGGTCAGGTTCTTCTGCAATGCTCCGGCGATGGAGCCCCGACGAAG
257 ACCGGAACCCCAA---------T---G-----C--C-A--CTCCGGCGATGGTGCCCCGACGAAG
** ** * * *
14987164 AAAAATGCGGCACCAGCACATGGTCGAGCCCAGTTTGTGCTGCTACAACCCTCGGTCCCGTCCGA
300 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCGA
***
14987229 TCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
365 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * *
14987294 CACGAAACGAGGGA-GCGGGTGTTCGACCGGCCAGAGGGCCGGGATGCACAAGTCGAGGATCGGT
430 CACGAAACGA-GCATGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGC
* * ** * * * *
14987358 CGAGTCCCCCTCTACGTGCCACCAATCCTGCTACTGCAACCCTCGGTCTGATCTGATCTTATACT
494 CGGGTCCCCCTCTACATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACT
14987423 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---AGGCGGGCGGGCACTACGTC
559 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGCGGGCGGGCACTACGTC
*
14987485 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
624 GGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
14987550 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTT
689 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* ** **
14987615 CACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
754 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGG
*
14987680 TTCAGG----------A-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
819 TTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
14987725 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
1 TGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
14987790 TTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTAT
65 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GCAGCAAACCTGT
* * *
14987855 AAAATCACAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
129 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * **
14987920 ATAAGGGCCATGTACCAGCACCCAACGTACATCATGTGCGCACACCCCCCGGCCCCGTCGATCAC
194 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCAC
** *
14987985 CGGAACCCCAATGCCACCGGTCAGGTTATCGGACGATGGTGCCTTGACGAAGAAAAATCCGGCAC
259 CGGAACCCCAATGCCA-C--TC-------CGG-CGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* *
14988050 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTCTTA-TCCGATCTTAGACTGG
313 CAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGA-TC-CAGTCCGATCTTAGACTGG
* * * * * *
14988113 TAATGAACTCCGTATGCCTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAG
376 GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * ** *
14988178 CGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG-CAGGGGATCGGCCGGGTCTCCCT
441 CATGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGCCGGGTCCCCCT
* * * * * ** * *
14988242 CTGCATGCTGTCGATCTTGCTGCCCCAACCCTCGGTCTGGTCCAATCTTTGTCTGGGAATGAACT
505 CTACATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * * *
14988307 CCGTATACCTAGGCCAACCGACGAAACGAGTGGGTGGACGGATGGGCAGGCACTACTTCGGCCAG
570 CCGTATGCCTAAGCCAACCGACGAAACGA--GCG-GGA-GG-CGGGCGGGCACTACGTCGGCCAG
14988372 AGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
630 AGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
14988437 TCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
695 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* **
14988502 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTTAAACTTTTTACGGTTCAGG
760 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCAGG
* * *
14988567 ATTTTTTAAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACATGGTAGACG
825 ATTTTTT-TAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
14988618 TGATCATTGTCTGTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
1 TGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
14988683 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGTAGCAAACCTAT
65 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GCAGCAAACCTGT
14988748 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
129 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* *
14988813 ATAAGGGCCAAGTACCAGCACCCATTGCGCATCATGTGCGCACACCCCCCGACCCCCCCGATCAC
194 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCAC
* * * *
14988878 CGGAACCCCAATGTC-GTCCGGCAAT-GTGCCCC-AGTGAAGAAAAATGCGGCACCAGCACATGC
259 CGGAACCCCAATGCCACTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGC
* * * * * *
14988940 TCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCAGTCTGATCTTAAATTGGGAATGAACTCCA
323 CCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCA
* *
14989005 TATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAGA-CCACGAAACGAGCGTGCGGGCGC
388 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA-ACCCACGAAACGAGCATGCGGGCGC
** * * ** * *
14989069 TCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGATCGGGTCCCTCTCTACGTGCTGCC
452 TCAACCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACATGCTGCC
* * *** * * *
14989134 GATTCTACTGGTGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
517 GATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * *
14989199 GCCAACTAATGAAACGAGTGTGCGGGTAGGCGGGCGGGCACTACGCCGGCCAGAGAGATC-GGAT
582 GCCAACCGACGAAACGA----GCGGG-AGGCGGGCGGGCACTACGTCGGCCAGAGAGA-CGGGAT
* * * *
14989263 GCGCAAACCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
641 GCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
* * * * *
14989328 ATGCCATTTTCATGGCTTGTAAATTGATACAATGGTCCCTTATGCCTTAACGTGAAGTTTTATGG
706 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
14989393 CAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTC-GGATTTTTTTAAA
771 CAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCAGGATTTTTTTAAA
*
14989457 TGTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGATG
836 T-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
14989496 TGATCCTTTTATTTTTGTTGGTATGCAAAAAAAATTCAGCGAAAAACTTG-AGCTGTACAATATT
1 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAG-TGTACAAGATT
* * *
14989560 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTAGCAGTAAACCTGT
65 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GCAGCAAACCTGT
14989625 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
129 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
*
14989690 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCG
194 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCA
* * * * *
14989755 CCGGAACCCCAATGCCA-TCCGGCGATGGTGCCCCGACGAAAAAAAATGTGACACCAGCGCCTGC
258 CCGGAACCCCAATGCCACTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * ** * * **
14989819 CCGAGCCAAGCTTGTGCTATCGCAACCCTCGATCCATTTTGATCTTAGACTGGGAATGAACTCCA
323 CCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCA
* * * *
14989884 TATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAAGCCACGAAACGAGCATGCGGGTGCT
388 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCT
* * * *
14989949 CAACCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCAGCCGGGTCCCCCTCTGCATGCTGTCG
453 CAACCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACATGCTGCCG
* * * * *
14990014 ATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAG
518 ATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
14990079 CCAACCGACGAAACGAGCGGTTG-GGCGGGCGGGCATTACGTCTGCCAGAGAGACAGGATGCACA
583 CCAACCGACGAAACGAGCGG--GAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACA
* * * * *
14990143 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTACGTGCCAATACC
646 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * ** *
14990208 ATTTTTATGGCTTGAAAATTAATACAATCATCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGA
711 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14990273 CGACTCGTTTTCTATTTTTCACGATTTTCAAACCATTTTACAGTTC-GAGATTTTTTTAAAATTT
776 CGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCAG-GATTTTTTT-AAATTT
*
14990337 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
839 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
14990373 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
1 TGATCCTTGTATTTTTGTTGGCATG--CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
14990438 TATGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAACCTG
64 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG-CAGCAAACCTG
*** * *
14990503 TAAAATCTCAAATGCTCTTTAAGACAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAA
128 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * *
14990568 TATAAGGGCCATGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCG
193 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCA
* *
14990633 CCGAAACCCTAATGCC
258 CCGGAACCCCAATGCC
14990649 GTCGATCAAG
Statistics
Matches: 2570, Mismatches: 291, Indels: 134
0.86 0.10 0.04
Matches are distributed among these distances:
863 1 0.00
864 1 0.00
865 3 0.00
867 1 0.00
872 6 0.00
873 260 0.10
874 1 0.00
875 199 0.08
876 16 0.01
877 254 0.10
878 133 0.05
879 470 0.18
880 458 0.18
881 219 0.09
882 8 0.00
884 29 0.01
886 215 0.08
887 2 0.00
889 2 0.00
892 2 0.00
893 290 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (874 bp):
TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCG
GAACCCCAATGCCACTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAA
CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACATGCTGCCGATC
CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACG
Found at i:14991270 original size:606 final size:606
Alignment explanation
Indices: 14990104--14991308 Score: 1806
Period size: 606 Copynumber: 2.0 Consensus size: 606
14990094 AGCGGTTGGG
* * *
14990104 CGGGCGGGCATTACGTCTGCCAGAGAGACAGGATGCACAAGCCATGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCACAAGCCATGGATCGATAGGGTGGTAGGT
* *
14990169 GGGTTTAGGTACATCTTCATATTTTTACGTGCCAATACCATTTTTATGGCTTGAAAATTAATACA
66 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCATTTTTATGGCTTGAAAATTAATACA
14990234 ATCATCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
131 ATCATCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
14990299 TTCAAACCATTTTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
196 TTCAAAACATTTTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACT
* *
14990364 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGT
261 TCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATGCAGCTAAAAACTCAAAGT
* *
14990429 GTACAAGATTATGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACA
326 GTACAAGATTATGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGACA
* * * * *
14990494 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGACAGTGTGAGTTCTCGAGGTTTGATGAGGGATA
391 ACAAACCTCTAAAATCTCAAATGCTCATTAAGACAGTGTGAGTTCCCAAGGTTTGATGAGGGATA
* * *
14990559 GGGGACCAATATAAGGGCCATGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCGACCC
456 GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCGACCC
* * * *
14990624 CCCCGATCGCCGAAACCCTAATGCCGTCGATCAAGTTCTCCGGTGATGCTCCGATGATGGTGCCC
521 CCCCGATCGCCGAAACCCCAATGCCGCCGATCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCC
*
14990689 TAGCGAAGAAAAATTTTACAC
586 CAGCGAAGAAAAATTTTACAC
* ** * **
14990710 CGGGCGGGTACTACGCCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCACAAGCCATGGATCGATAGGGTGGTAGGT
* * *
14990775 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCATTTTTATGGCTTGAAAATTAATACA
** * *
14990840 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
131 ATCATCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ** ** *
14990905 TTCAAAACTTTTTATGGTTCGAGA-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGACCCTAAACT
196 TTCAAAACATTTTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACT
* * *
14990969 TCTTAGAGGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAAATGCAGCTAAAAACTCAAAGT
261 TCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATGCAGCTAAAAACTCAAAGT
* * *
14991033 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATAGCTACTGGCA
326 GTACAAGATTATGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGACA
*
14991098 ACAAACCTCTAAAATCTCAAATGCTCATTAAG-CGGGTGTGAGTTCCCAAGGTTTGATGAGGGAT
391 ACAAACCTCTAAAATCTCAAATGCTCATTAAGAC-AGTGTGAGTTCCCAAGGTTTGATGAGGGAT
* * *
14991162 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACAACCCACCTGG
455 AGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCAC-ACCC-CCCGA
* * * * * *
14991227 CCCCCCCGATCGTCGAAACCCCAATGCTGCC-AGTCAGGTTCTCCTGCGATGCTTCGGCGATGGT
518 CCCCCCCGATCGCCGAAACCCCAATGCCGCCGA-TCAAGTTCTCCGGCGATGCTCCGACGATGGT
*
14991291 GCCCCAGTGAAGAAAAAT
582 GCCCCAGCGAAGAAAAAT
14991309 ACGGCACCAA
Statistics
Matches: 535, Mismatches: 60, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
603 1 0.00
604 192 0.36
605 74 0.14
606 268 0.50
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (606 bp):
CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCACAAGCCATGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCATTTTTATGGCTTGAAAATTAATACA
ATCATCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTCAAAACATTTTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACT
TCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATGCAGCTAAAAACTCAAAGT
GTACAAGATTATGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGACA
ACAAACCTCTAAAATCTCAAATGCTCATTAAGACAGTGTGAGTTCCCAAGGTTTGATGAGGGATA
GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCGACCC
CCCCGATCGCCGAAACCCCAATGCCGCCGATCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCC
CAGCGAAGAAAAATTTTACAC
Found at i:14992282 original size:27 final size:26
Alignment explanation
Indices: 14992244--14992304 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
14992234 CCTCGGTCCG
14992244 GTCCG-AT-CTTAGACTGGGAATTGAA
1 GTCCGTATGCTTAGACTGGGAA-TGAA
14992269 GTCCGTATGCTTAGACTGGGAATGAA
1 GTCCGTATGCTTAGACTGGGAATGAA
*
14992295 CTCCGTATGC
1 GTCCGTATGC
14992305 CTAAGTCAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 5 0.15
26 15 0.45
27 13 0.39
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
GTCCGTATGCTTAGACTGGGAATGAA
Found at i:14992301 original size:26 final size:27
Alignment explanation
Indices: 14992251--14992304 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
14992241 CCGGTCCGAT
*
14992251 CTTAGACTGGGAATTGAAGTCCGTATG
1 CTTAGACTGGGAATTGAACTCCGTATG
14992278 CTTAGACTGGGAA-TGAACTCCGTATG
1 CTTAGACTGGGAATTGAACTCCGTATG
14992304 C
1 C
14992305 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATTGAACTCCGTATG
Found at i:14993147 original size:26 final size:26
Alignment explanation
Indices: 14993118--14993170 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14993108 CCGGTCTGAT
*
14993118 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
* *
14993144 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
14993170 C
1 C
14993171 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTCCGTATG
Found at i:14994052 original size:26 final size:26
Alignment explanation
Indices: 14994016--14994066 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14994006 GGTCTGATCA
14994016 TAGACTGGGAAAGAACTACGTATGCT
1 TAGACTGGGAAAGAACTACGTATGCT
* *
14994042 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAAAGAACTACGTATGC
14994067 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAAAGAACTACGTATGCT
Found at i:14994214 original size:896 final size:895
Alignment explanation
Indices: 14990710--14996705 Score: 7239
Period size: 867 Copynumber: 6.8 Consensus size: 895
14990700 AATTTTACAC
* * *
14990710 CGGGCGGGTACTACGCCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
14990775 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
14990840 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * * * *
14990905 TTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGACCCTAAACTT
196 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTT
** * * * * *
14990970 CTTAGAGGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATGCAGCTAAAAACTCAAAGTGT
260 GGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
14991035 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATAGCTACTGGCAAC
324 AC-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * * *
14991100 AAACCTCTAAAATCTCAAATGCTCATTAAGCGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
14991165 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACAACCCACCTG-GCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC-ACCC-CCCGCGGC
* * * * * *
14991229 CCCCCGATCG-TCGAAACCCCAATGCTGCCAGTCAGGTTCTCCTGCGATGCTTCGGCGATGGTGC
516 CCCCCGATCGAT-GGAACCCCAATGCCGCCGGTCAGGTTCTCC-GTGATGCTCCGACGATGGTGC
* * * * * * *
14991293 CCCAGTGAAGAAAAATACGGCACCAACATAT-CCATGAGCCCAGCATGTGCTACCGCAACCCTTG
579 CCCGGCGAAGAAAAATACGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * * *
14991357 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTTCTTATGC
643 GTCCGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
14991422 CTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTTAGTCGGCCAGAGGGGTGTGATGTGCAAGTC
708 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCC
* * * * ** * * ** * *
14991487 GAGGATCGATCGGGTCCCCCTCTGCATGCTGTTGATCTTACTGCCGTAACCCTCGGTCCGGTCTG
773 GGGGATCGACCGGGTCCCCCTCTACCTGCTGCCGATCCTGCTGCCACAACCCTCGAT-CGATCTG
* * * * *
14991552 ATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGATG-AA--A--TGA---G
837 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGG
* * * *
14991603 CGGGCGGGCAATACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATATGGTGGTAGGT
1 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
14991668 GGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGACAATTTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
14991733 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * * *
14991798 TTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAGGGAGTTTTAGCCCCAAACTT
196 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTT
* * * * *
14991863 GTTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTAT
260 GGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
14991928 ATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCTGC
324 A-CAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
14991993 AAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGA
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
14992058 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCAC-CGGCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCC-CGCGGCC
*** *
14992122 CGCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGG-T-T---T--T--T-CGACGATGGTGCCC
517 C-CCCGATCGATGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTGATGCTCCGACGATGGTGCCC
* * * * * *
14992177 CGACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAACATCTGCTGCCGCAACCCTCGGTC
581 CGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
14992242 CGGTCCGATCTTAGACTGGGAATTGAAGTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
646 CGGTCTGATCTTAGACTGGGAA-AGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
14992307 AAGTCAATCCACG-AA--A-------------CA---AG-C----GTGC---AT---C---CCGG
710 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * * * *
14992339 GGATCGATCGGGTACCCCTTTGCGTGTTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTGAT
775 GGATCGACCGGGTCCCCCTCTACCTGCTGCCGATCCTGCTGCCACAACCCTCGATC-GATCTGAT
* * *
14992404 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TCGATGAAATGAACGGACGGG
839 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCGGACGGG
* * * *
14992461 CAGGCAGGCTCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGT
1 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
14992526 GGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAACTCATAAA
66 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
14992591 ATGGTCCCGTAAGCCTTCACGTGAAGTTCCATGGCAAGATGACTCGTTTTTTATTTTTCACT-AT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGAT
** * * * *
14992655 TTTCAAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTTGAAAGGAGTTTTGGCCCCAAGCT
195 TTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACT
* * * * *
14992720 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAAGTCAAAGTG
259 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGC-ACAAAAAATTCAGCTAAAAACTCGAAGTG
** * *
14992785 TACAAGATTTTGTGACTGTTTGAAAAAAGTGTCACCATTTTAGACACTTTAATGGCTACTGGCAG
323 TAC-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14992850 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
387 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * *
14992915 AGGGCCGAT-TAAAGGGCCAAGTACCAGCACCCTTCGCACATCATGTGTGCGCACCCCTCG-GCC
452 GGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGCGGC
* *
14992978 CCCCCGATC-ATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
516 CCCCCGATCGAT-GGAACCCCAATGCCGCCGGTCAGGTTCTCC-GTGATGCTCCGACGATGGTGC
* * *
14993042 CCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCATCGG
579 CCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
14993107 TCCGGTCTGATCTTAGACT-GGAAATGAACTCCGTATGCTTAGACAGGGAATGAACTCTGTATGC
644 TCCGGTCTGATCTTAGACTGGGAAA-GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14993171 CTAAGTCGACCCACGAAACGAGCGTGCTGGTGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCC
708 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCC
** * ** * *
14993236 GGGGATCGGTCGGGTCCCCCTCTACCTGCTGCCAATCCTGCTATCGCAACCCTCGATCCAGTCTG
773 GGGGATCGACCGGGTCCCCCTCTACCTGCTGCCGATCCTGCTGCCACAACCCTCGATCGA-TCTG
*
14993301 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGG
837 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGG
*** *
14993360 CGGGCGGGCACTACTTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGT
1 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** * * * *
14993425 GGGTTTAGGTGCATCTTCATATTTCTACGTGCGAATGCCATTGTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14993490 GTGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTATCATGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
14993555 TTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTCTTTTGGAAGGAGTTTTTGCGCCAAACTT
196 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT-TTTTGGAAGGAGTTTTGGCCCCAAACTT
* * *
14993620 GGTGGACGTGATCCTTGT-TATTTTGTTGGCATGCACAAAGGAATTCAGCTAAAAACTCGAAGT-
260 GGTAGACGTGATCCTTGTAT-TTTTCTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAAGTG
* * * *
14993683 TTC-CA-TTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGC
323 TACAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
14993746 AAACCTGTAAAATCTCAAATGTTC-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
14993810 GGGCTAATATAAGGGCCAAGTACCAGTACCAATCGCACCA-CATGTGCGCACACACCCCCGCGGC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA-CATCATGTGTGCACAC-CCCCCGCGGC
* * * * *
14993874 CCCCCGATCGCTGGAACCCCAAAGCTGCCGGTCAGGTTCTCCGATGATGCACCGCCGATGGTGCC
516 CCCCCGATCGATGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-TGATGCTCCGACGATGGTGCC
* * * *
14993939 CCGACGAAGAAAAATTCGGCACTAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT
580 CCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
14994004 CCGGTCTGATCATAGACTGGGAAAGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
645 CCGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
14994069 AAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAG-CAGGGCAGAAGGGTGGGATGCGCAAGCCG
710 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-GCCAGAGGGGCGGGATGCGCAAGCCG
* * * ** *
14994133 GGGATCGGCCGGGTCCCCCTCTGCCTGCTGCCGATCTTGCTGCTGCAACCTTCGATCTGATCTGA
774 GGGATCGACCGGGTCCCCCTCTACCTGCTGCCGATCCTGCTGCCACAACCCTCGATC-GATCTGA
* * *
14994198 TCTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAATGAGCGGACGGG
838 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGG
* * *
14994256 CGGGCGAGCGGGCAGC-ACGCCGGCCAAAGAGACGGAATGCGCAAGCCATGGATCGATAGGGTGG
1 C--G-G-GCGGGCA-CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
14994320 TAGGTGGGTTTAGGAACATCTTCATATTTCTGCATCCCAATGCCATTTTTATGACTTGTAAATTC
61 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
** *
14994385 ATACAATCATCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
126 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
14994450 TGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTATGAAGGATTTTTGGCCCCA
191 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCA
* * *
14994515 AACTTGGTAGACGTGATCCTTGTATTTTTCTTGTCTTGCACAAAAAAATTCAGCCAAAAACTCGA
255 AACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGA
* * * *
14994580 AGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCTCCATTTCAAACACTTTAATGGCTACCG
319 AGTGTAC-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
14994645 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGG
383 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
14994710 ATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCAC-
448 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCC-CG
* * *** * **
14994774 CGGCCCTCCGATTGCCAGAACCCAAATGCCATCGGTCAGG---T---T--T--TCCGACGATGGT
512 CGGCCCCCCGATCGATGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTGATGCTCCGACGATGGT
* * * * **
14994829 GCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAATATGTGCTGCCGCAA--C-C
577 GCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
14994891 -GT-C-G---G---TT----T--G---G---TCCG-AT-CTTAGACTGGGAATGAACTTCGTATG
642 GGTCCGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
14994933 CCTAAGTTAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGC
707 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * *
14994998 CGAGGATCGACCGAGTCCCACTC-CCCGTGCTGCCGATTCTACTGCCACAACCCTTGGTCCAGTC
772 CGGGGATCGACCGGGTCCCCCTCTACC-TGCTGCCGATCCTGCTGCCACAACCCTCGATCGA-TC
* ** * * * *
14995062 TGATCTTAGTCTACGAATAAACTCCATATGCCTATGCCAACCGACGAAACGAGCGGACGGG
835 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGG
*
14995123 CGGGCAGGCGGTCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
1 CGGGC--G-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
14995188 AGGTGGGTTTAGGCACATCCTCATGTTTCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCA
62 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
14995253 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
127 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * **
14995318 GATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAGTG-GTTTTGGCATCA
192 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAG-GAGTTTTGGCCCCA
* * * *
14995382 AACTTGGTATACATGAACCTTGTATTTTTCTTGGCATGCACAAAAACATTCAGCTAAAAACTCAA
255 AACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGA
* * *
14995447 AGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCTCCATTTCAGACACTTTAATGGCTACTG
319 AGTGTAC-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
14995512 GCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGG
383 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
14995577 ATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCC
448 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGC
* * * *
14995642 GGCCCCCCCGATC-ATCGGAACCCCAATGTCGCCGGTAAGGTTCTCCGGCGATGCTCTGACGATG
513 GG-CCCCCCGATCGAT-GGAACCCCAATGCCGCCGGTCAGGTTCTCC-GTGATGCTCCGACGATG
* * * * * * * *
14995706 GTGCCCTGGGGAAGAATAATGCGACACCTGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCC
575 GTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * *
14995771 TCGGTCTGATCTGATCTTATACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTA
640 TCGGTCCGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
14995836 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAA
705 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
* * * * *
14995901 GCTGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGGT
770 GCCGGGGATCGACCGGGTCCCCCTCTACCTGCTGCCGATCCTGCTGCCACAACCCTCGAT-CGAT
* * *
14995966 -TCGATCTTAGACTGGGAGTGAACTCCATATGCCTAAGCCAACCGACGAAACGA---G-CGGG
834 CT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGG
* * *
14996024 CGGACGGGTACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
14996089 GGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGT-AATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
14996153 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** ** * **
14996218 TTCAAAACTTTTTGTGGTTCTGGATTTTTTAAAATTTTTTCGGAACAAGTTTTGGCCCCAAACGT
196 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAAC-T
* * *
14996283 T-TTAGTA-GTGATCCTTGTATATTTT-TTGGCATGTACCAAAAAAATCAGCTAAAAACTCGAAG
259 TGGTAG-ACGTGATCCTTGTAT-TTTTCTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAG
14996345 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
321 TGTAC-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
14996410 AGCAAACCTGTAAAATCTGAAATGCTTTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
385 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
14996475 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTATGCACACCCCCCGAC-
450 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCG-CG
* *
14996539 -CCCCCCGATCGTTGGAACCCTAATGCCGCCGGTCAGGTTCTCCG-GCATGCTCCGACGATGGTG
514 GCCCCCCGATCGATGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTG-ATGCTCCGACGATGGTG
* *
14996602 CCCTGGCGAAGAAAAATACGGCAACAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
578 CCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* ** * *
14996667 GTCTGGTCCAATGTTAGACTGGGAATGAACTCCGTATGC
643 GTCCGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGC
14996706 CTAAGCGAGC
Statistics
Matches: 4419, Mismatches: 522, Indels: 324
0.84 0.10 0.06
Matches are distributed among these distances:
849 1 0.00
850 93 0.02
851 2 0.00
853 2 0.00
855 2 0.00
856 31 0.01
857 7 0.00
858 455 0.10
859 13 0.00
862 1 0.00
863 3 0.00
864 3 0.00
865 2 0.00
866 66 0.01
867 718 0.16
868 37 0.01
869 4 0.00
871 1 0.00
872 1 0.00
875 1 0.00
877 2 0.00
879 59 0.01
880 1 0.00
881 2 0.00
882 88 0.02
883 55 0.01
884 1 0.00
885 3 0.00
886 1 0.00
887 1 0.00
888 2 0.00
889 2 0.00
890 4 0.00
891 6 0.00
892 10 0.00
893 668 0.15
894 117 0.03
895 94 0.02
896 671 0.15
897 126 0.03
898 22 0.00
899 373 0.08
900 274 0.06
901 16 0.00
902 1 0.00
903 4 0.00
904 115 0.03
905 256 0.06
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGCGGCCCCCC
GATCGATGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTGATGCTCCGACGATGGTGCCCCGGCG
AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
TGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
ACCGGGTCCCCCTCTACCTGCTGCCGATCCTGCTGCCACAACCCTCGATCGATCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGG
Found at i:14998322 original size:26 final size:26
Alignment explanation
Indices: 14998293--14998344 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14998283 CTGGTCCAAT
* *
14998293 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14998319 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14998345 GCTAAGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14998826 original size:899 final size:889
Alignment explanation
Indices: 14996658--14999301 Score: 3165
Period size: 899 Copynumber: 2.9 Consensus size: 889
14996648 TGTGCTGCCG
* * * * *
14996658 CAACCCTCGGTCTGGTCCAATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAGCCGACAAA
1 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* * * *
14996723 ACGAGCGGGCGGGCGGGCGGGCGCTATGCCGGCCAGAGAGACGGGATGCGCAAGGTTTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA-GTGTGGATCGA
* * * * * * *
14996788 TAGGGTGGTAGATGAGCTTAGGCACATCTTAATATTTTTGCAAGCCAATGTCACTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG--TGCCAATGCCATTTTTATGGCTT
* *
14996853 GTAAATTCATAAAATGGTCCCTTAA-CCTTCACGTGAAGTTTCTTTGGCAAGACAACTCGTTTCT
193 GTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTCT
* * * *
14996917 ATTTTTCCATGATTTTGGAAACTTTTTAC-GTTCGAGGATTTTAT-AA-TTTTTTCGAAGGAGTT
257 ATTTTT-CATGATTTTCGAAACTTTTTACGGTTCGA-GATTTTTTAAATTTTTTTGGAAGTAGTT
*
14996979 TTGGCCCCAAACTTCATAGACGTGATGACCTTGTATTTTTGTTGGCATGCCACAAAACAATTCAG
320 TTGGCCCCAAACTTCATAGACGTGAT--CCTTGTATTTTTGTTGGCATG-CACAAAAAAATTCAG
*
14997044 CTAAAAACTCGGAGTGTACAAAAATTTT-TGGA-CAATTGAAAAAAAGTG-TCCC-TATTCAAAC
382 CTAAAAACTCGGAGTGTAC-AAAATTTTGT-GACCATTTG-AAAAAAGTGTTCCCAT-TTCAAAC
* * *
14997105 AC-TTAATGGTTACTGCAGCCAAACCTGTAAAATCTTAAATGCTCTTTAACGGCGGTGTGAGTTC
443 ACTTTAATGGCTACTGCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTC
* * *
14997169 TCGAGG-TTGATTGACGGATAGGGGGCCAATATGTAAGCGGCCAAGTAAACCAACACCCATCACA
506 TCGAGGTTTGA-TGAGGGATAGGGGGCC-A-ATGTAAG-GGCCAAGT--ACCAGCACCCATCGCA
* * *
14997233 CATCATGTGC-C-CA----CCG-CCCCCCGCATCG-TAAAACCCCAATGCCGTCGGTCAGGTTCT
565 CATCATGTGCGCACACCCCCCGCCCCCCCG-ATCGCCAGAACCTCAATGCCGTCGGTCAGGTTCT
* * * *
14997290 CCGATGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCC
629 CCG-TGATGCTCCG--GATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCC
* * * * ** *
14997355 AGCATGTGCTACCGTAACCCTCGGTCCAGCCCGATCTTAGACTGGGAATGAACTCCATATGGTTA
691 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTA
* * * * *
14997420 GACAGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGTGCTTAGCCGGC
756 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * * ** ** * * * * * *
14997485 CAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTAACGATCCTGCT
821 CAGAGGGGCGAGATGCGCAAGCCAAGGATCGACCAGGTCCCCCTCTACATGCTAACAATCCTACT
*
14997550 ACCG
886 ACCA
* * *
14997554 CAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACGCCGTATGCCTAAGCCAACCGACAAA
1 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* * * *
14997619 ACGAGCGGGTGGGCGGGCGGGCTGGCACTACG-TCGGCCAAAGAGACGGGATGCGTAAGCCGTGG
66 ACGAGC----GGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG-TGTGG
14997683 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTAT
125 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTT-TGTGCCAATGCCATTTTTAT
* * * * * *
14997748 GGTTTGTAAATTCATAGAATGGTCCCTTAAGCCTGCACATGAAGTTTCATGGCAAGATGACTCAT
188 GGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-G
* * ** *
14997813 TTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAGAATTTTTTCGGAAGG
252 TTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTA-AATTTTTTTGGAA-G
** *
14997878 T-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTC
315 TAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
14997942 AGCTAAAAACTTGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACAC
380 AGCTAAAAACTCGGAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAAACAC
*
14998007 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
445 TTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
14998072 AGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGTACATCATGTG
509 AGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
14998137 CGCACACCCCCCGACCCCCCCGATCGCCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGGTGATG
574 CGCACACCCCCCG-CCCCCCCGATCGCCAGAACCTCAATGCCGTCGGTCAGGTTCTCC-GTGATG
* * * * *
14998202 CTCCGGGGATGGTGCCCTGGTGAAGTAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGC
637 CTCC--GGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGC
* * * *
14998267 TGCCGCAACCCTTGGTCTGGTCCAATCTTAGGCTGGGAATGAACTCTGTATGCTTAGACTGGGAA
700 TGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
* * * * * *
14998332 TGAACTCCGTATGGCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCAACTGGCCAGAGGGGC
765 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
**
14998397 GAGATGCGCAAGCCAAGGATCGACCAGGTCCCCCTCTACATGCTGCCAATCCTACTACCA
830 GAGATGCGCAAGCCAAGGATCGACCAGGTCCCCCTCTACATGCTAACAATCCTACTACCA
* * *
14998457 TAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* * *
14998522 ACGAGCAGGCGGGCAGGCGGGCACTACGCTGGCCAGAGAGATGGGATGCGCAAGTAGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGT-GTGGATCGA
14998587 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGTGCCAATGCCATTTTTATGGCTT
* *
14998652 GTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTATCT
193 GTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT-TCT
* *
14998717 ATTCTTT-ATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTTTGGAAGTAGTT
257 ATT-TTTCATGATTTTCGAAACTTTTTACGGTTCGAGA-TTTTTTAAATTTTTTTGGAAGTAGTT
** * * *
14998781 TTGGCCCCAAA-TGTTTTAGACGTTATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCT
320 TTGGCCCCAAACT-TCATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * * *
14998845 AAAACCTCGAAGTGTACGAAATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAACACTTTA
384 AAAAACTCGGAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAAACACTTTA
* *
14998910 ATGGCTACTCGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGT
449 ATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* ** * *
14998975 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGAGCACCCAACGCACACCATGTGCGCA
513 TTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
14999040 CACCCCCCGGCCCTCCCGACCACCAGAA-CTCCAATACCGTCGATCAGGTTCTCC--G--G---C
578 CACCCCCC-GCCCCCCCGATCGCCAGAACCT-CAATGCCGTCGGTCAGGTTCTCCGTGATGCTCC
* * * * * *
14999097 -GATGGTGCCCTGGCGAAGAAAAATGCGGTACTAGCACATGCCCTAGCCCAGCATGTGCTGTCAT
641 GGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGT
** * *
14999161 AACCCTCAATCCGATCCTATCTTATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAAT
706 AACCCTCGGTCCGGTCC-A----ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * * *
14999226 GAACTTCGTATGCCTAGGTCAACCCACGAAATGAGTGTGCGGGTGCTCAGCCAGCCAGAGGGGCG
766 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCG
14999291 A-ATGCGCAAGC
831 AGATGCGCAAGC
14999302 GGGATCGGTC
Statistics
Matches: 1504, Mismatches: 195, Indels: 102
0.84 0.11 0.06
Matches are distributed among these distances:
888 65 0.04
889 1 0.00
891 1 0.00
892 10 0.01
893 95 0.06
894 1 0.00
895 23 0.02
896 65 0.04
897 10 0.01
898 17 0.01
899 501 0.33
900 253 0.17
901 105 0.07
902 11 0.01
903 343 0.23
904 2 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (889 bp):
CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
ACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGTGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCTATTT
TTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAATTTTTTTGGAAGTAGTTTTGGCC
CCAAACTTCATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGGAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAAACACTTTAATGGCTA
CTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GCCCCCCCGATCGCCAGAACCTCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCCGGATGGTGCC
CTGGCGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGT
CCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCAA
GGATCGACCAGGTCCCCCTCTACATGCTAACAATCCTACTACCA
Found at i:14999222 original size:26 final size:26
Alignment explanation
Indices: 14999186--14999238 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14999176 CCTATCTTAT
*
14999186 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14999212 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14999238 C
1 C
14999239 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14999889 original size:26 final size:26
Alignment explanation
Indices: 14999853--14999931 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
14999843 CTGGTCAGAT
14999853 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14999879 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14999905 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14999931 C
1 C
14999932 CTAAGTTAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15000801 original size:26 final size:26
Alignment explanation
Indices: 15000762--15000814 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15000752 GTGGTCCGAT
*
15000762 CTTAGACTGGGAATGAA-TTACGTATG
1 CTTAGACTGCGAATGAACTT-CGTATG
15000788 CTTAGACTGCGAATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTTCGTATG
15000814 C
1 C
15000815 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTTCGTATG
Found at i:15000983 original size:26 final size:26
Alignment explanation
Indices: 15000947--15001025 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
15000937 TCGGTCTGAT
15000947 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15000973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15000999 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15001025 C
1 C
15001026 CTAAGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15001106 original size:25 final size:25
Alignment explanation
Indices: 15001073--15001123 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
15001063 CCGGCCAGAG
*
15001073 GGGCGGGATGCGCAAGCCGAAGATC
1 GGGCAGGATGCGCAAGCCGAAGATC
* *
15001098 GGGCAGGATGTGCAAGCCGAGGATC
1 GGGCAGGATGCGCAAGCCGAAGATC
15001123 G
1 G
15001124 ATAGGGTGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.45, T:0.10
Consensus pattern (25 bp):
GGGCAGGATGCGCAAGCCGAAGATC
Found at i:15002240 original size:26 final size:26
Alignment explanation
Indices: 15002200--15002252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15002190 CCGGTCTGAT
15002200 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
15002226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
15002252 C
1 C
15002253 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:15004029 original size:26 final size:26
Alignment explanation
Indices: 15004000--15004104 Score: 210
Period size: 26 Copynumber: 4.0 Consensus size: 26
15003990 CCGATCCGAT
15004000 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15004026 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15004052 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15004078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15004104 C
1 C
15004105 CTAAGTCAAC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15006781 original size:26 final size:26
Alignment explanation
Indices: 15006745--15006797 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15006735 CTAGTTCGAT
*
15006745 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15006771 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15006797 C
1 C
15006798 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15007636 original size:26 final size:26
Alignment explanation
Indices: 15007600--15007652 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15007590 CTGATATGAT
* *
15007600 CTTAGATTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15007626 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15007652 C
1 C
15007653 GGCCAAGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15007838 original size:244 final size:242
Alignment explanation
Indices: 15007411--15007896 Score: 650
Period size: 244 Copynumber: 2.0 Consensus size: 242
15007401 CCAATATAAG
* *
15007411 GGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAA
1 GGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCAATCGTCGAAA
* * *** ** ***
15007476 CCCTAATACCATCGATCAAGTTCTCCGGTGATGCTCTGGCAATGGTGCCCCGGGGAAGAAAAATA
66 CCCCAATACCACCGATCAAGTTCTCCCACGATGCTCCAGCAATGGTGCCCCGACAAAGAAAAATA
* * * *
15007541 TGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGATATGATCTTAGA
131 TGGCACCAGCACATGCCTAAGCCCAGCATGTGCTACCGCAACCCTCAGTCTGATACGATCTTAGA
* *
15007606 TTGGGAATGATCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
196 TTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
15007653 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCGACCCCCCCAATCGTCGG
1 GGCCAAGTACCAACACCCATCGCACATCATGTGCGCACA-CC-CCCCGACCCCCCCAATCGTCGA
* * * * **
15007718 AACCCCAATGCCGCCGGTCAGGTTCTCCCACGATGCTCCAGTGATGGTGCCCCGACAAAGAAAAA
64 AACCCCAATACCACCGATCAAGTTCTCCCACGATGCTCCAGCAATGGTGCCCCGACAAAGAAAAA
* * * *
15007783 TATGGCACCAGCACATGCGC-AAGCCTAGCATGTGCTACCGTAACCCTCGGTCTGATCCGATCTT
129 TATGGCACCAGCACATGC-CTAAGCCCAGCATGTGCTACCGCAACCCTCAGTCTGATACGATCTT
*
15007847 AGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGC
193 AGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
15007897 CTAAGTCATC
Statistics
Matches: 209, Mismatches: 32, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
242 37 0.18
243 2 0.01
244 169 0.81
245 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.23, T:0.20
Consensus pattern (242 bp):
GGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCAATCGTCGAAA
CCCCAATACCACCGATCAAGTTCTCCCACGATGCTCCAGCAATGGTGCCCCGACAAAGAAAAATA
TGGCACCAGCACATGCCTAAGCCCAGCATGTGCTACCGCAACCCTCAGTCTGATACGATCTTAGA
TTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
Found at i:15009445 original size:908 final size:895
Alignment explanation
Indices: 15007653--15009699 Score: 3004
Period size: 908 Copynumber: 2.3 Consensus size: 895
15007643 CTCCGTATGC
* *
15007653 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCGACCCCCCCAATCGTCGG
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCAATCGTCGG
* * *
15007718 AACCCCAATGCCGCCGGTCAGGTTCTCCCACGATGCTCCAGTGATGGTGCCCCGACAAAGAAAAA
64 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAA
* * * **
15007783 TATGGCACCAGCACATGCGCAAGCCTAGCATGTGCTACCGTAACCCTCGGTCTGATCCGATCTTA
129 TACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGATCCGATCTTA
* * * * *
15007848 GATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCATCCCACGA
194 GATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAA
* ** * ** * *** *
15007913 AACGATCGTTTGGGTGCTCAGTCGGACAGAGGGGTTGGATGCGTAAGTTGGGGATCGGTCGAGTC
259 AACGAGCGTGCGGGCGCTCAGTCGGACAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGAGTC
* * * * * * * * *
15007978 CCCCTCTGCGTGCTACCGATCTTGCTGCCGCAACCCTTGGTCTGGTTCGATCTTAGACTGGGAAT
324 ACCCTCTACATGCTACCGATCTTGCTGCCACAACCCTTAGTCCGGTCCAATCTTAGACTGCGAAT
* * * * *
15008043 GAACTTCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGA
389 GAACTTCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGGCACTACGCCGACCAGAGA
*
15008108 GACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT
454 GACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
15008173 ACATGCCAATGCCATTTTTATGCCTTGTAAATTCTTACAATGGTCCATTAAGCCTTCACGTGAAG
519 ACATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAG
* * *
15008238 TTTCATGGCAAGATGACTCTTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
584 TTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATT
* * *
15008303 TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCT
649 TTTTAAAATTTTTTCGAAAGGAGTTTAGGCCCCAAACATGGTAGACGTGATCCATGTATTTTTCT
15008368 TGGCATACATAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAA
714 TGGCATACATAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAA
* *
15008433 AGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCCAACCTGTAAAATCTCAAATGCTCTT
779 AGTGTCCCCATTTCAGACACTTTAATGACTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
15008498 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
844 TAAGGGGGTGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
15008550 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCCAATCGCCGGAA
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAA
* *
15008615 CCCCAATGCCGCTGGTCAAGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAAT
66 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAG-CGATGGTGCCCCGACGAAGAAAAAT
* * * * *
15008679 GCGGCACCAGCACATGCTCAACCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTGG
130 ACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGATCCGATCTTAG
* * *
15008744 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCAACAAA
195 ATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAA
* *
15008809 ACGAGCGTGCGGGCGCTCAG-CTGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTC
260 ACGAGCGTGCGGGCGCTCAGTC-GGACAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGAGTC
*
15008873 ACCCTCTACATGCTGCCGATCTTGCTGCCACAACCCTTAGTCCGGTCCAATCTTAGACTGCGAAT
324 ACCCTCTACATGCTACCGATCTTGCTGCCACAACCCTTAGTCCGGTCCAATCTTAGACTGCGAAT
* *
15008938 GAA-TTCCATATGCCTAAGCGAACCGACGAAACAAGCGGGCGGAGCGGGCAGGCGGGCAGGCATT
389 GAACTT-CATATGCCTAAGCCAACCGACG--A-AA-----C-GAGCGGGC-GG-GGG--GGCACT
* *
15009002 ACGCCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
440 ACGCCGACCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
15009067 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
505 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCATTAA
15009132 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTT-TATTTTTCATGATTTTTGAAACTTT
570 GCCTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTTTCTATTTTTCATGATTTTTGAAACTTT
15009196 TTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTAGGCCCCAAACATGGTAGACGTGA
634 TTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTAGGCCCCAAACATGGTAGACGTGA
* * * * *
15009261 TCCATGTATTTTTGTTGGCATGCATAAAAATAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
699 TCCATGTATTTTTCTTGGCATACATAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGACTTTG
*
15009326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAA
764 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTAGCAGCAAACCTGTAAA
* *
15009391 ATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATGTA
829 ATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
15009456 AG
894 AG
*** * * * * *
15009458 GGCCAAGTACCAGTGTCGATGGCACATCATGTGCGCACACCCCCCGGCCACCCCGATCGTCGAAA
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAA
* * *
15009523 CCCCAATGCAGCCGGTCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCGATGAAGAAAAATA
66 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATA
* * * * * **
15009588 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCACCCCTCGATCCGATATGATCTTAGA
131 CGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGATCCGATCTTAGA
*
15009653 TTGGGAATGATCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
196 TTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
15009700 GGGCCAAGTA
Statistics
Matches: 1022, Mismatches: 110, Indels: 25
0.88 0.10 0.02
Matches are distributed among these distances:
894 4 0.00
895 317 0.31
896 2 0.00
897 39 0.04
898 2 0.00
903 1 0.00
904 8 0.01
905 2 0.00
906 2 0.00
908 639 0.63
909 6 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAA
CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATA
CGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGATCCGATCTTAGA
TTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAA
CGAGCGTGCGGGCGCTCAGTCGGACAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGAGTCAC
CCTCTACATGCTACCGATCTTGCTGCCACAACCCTTAGTCCGGTCCAATCTTAGACTGCGAATGA
ACTTCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGGCACTACGCCGACCAGAGAGA
CGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
ATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTT
TTAAAATTTTTTCGAAAGGAGTTTAGGCCCCAAACATGGTAGACGTGATCCATGTATTTTTCTTG
GCATACATAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGACTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
Found at i:15009676 original size:26 final size:26
Alignment explanation
Indices: 15009647--15009699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15009637 CCGATATGAT
* *
15009647 CTTAGATTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15009673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15009699 C
1 C
15009700 GGGCCAAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15013846 original size:370 final size:370
Alignment explanation
Indices: 15013165--15014283 Score: 2006
Period size: 370 Copynumber: 3.0 Consensus size: 370
15013155 AAGGTCGGAG
*
15013165 CCCGTGAC-AGTTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGCCGAGCGCCTCGAGGGA
1 CCCGTGACAAG-TGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGTCGAGCGCCTCGAGGGA
15013229 GGTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACG
65 GGTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACG
* *
15013294 GAGCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGTATAAAAGGG
130 GACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGG
*
15013359 TTCACACCATCTCCGCCTTGTGAGGCGCCTTTTATAGGACAAAACCGTGAGGCCAGGGGGCCAGA
195 TTCACACCATCTACGCCTTGTGAGGCGCCTTTTATAGGACAAAACCGTGAGGCCAGGGGGCCAGA
15013424 GCGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATTCGGGACGCCGGAAGGGTG
260 GCGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATTCGGGACGCCGGAAGGGTG
*
15013489 AATGCCCGGGTCCTGGAGCCGCGCGGGTTCAGAGCTTGAGTCTCGA
325 AATGCCCGGGTCCCGGAGCCGCGCGGGTTCAGAGCTTGAGTCTCGA
* *
15013535 CCCGTGACAAGTGCTATCAGAGCCAGCCCTAAACCGTTCGATCCACGTCGAGCACCTCGAGGGAG
1 CCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGTCGAGCGCCTCGAGGGAG
15013600 GTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGG
66 GTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGG
* *
15013665 ATCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCTCTGGGGTATAAAAGGGT
131 ACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGT
*
15013730 TCACACCATCTACGCCTTGTGAGGCACCTTTTATAGGACAAAACCGTGAGGCCAGGGGGCCAGAG
196 TCACACCATCTACGCCTTGTGAGGCGCCTTTTATAGGACAAAACCGTGAGGCCAGGGGGCCAGAG
15013795 CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATTCGGGACGCCGGAAGGGTGA
261 CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATTCGGGACGCCGGAAGGGTGA
15013860 ATGCCCGGGTCCCGGAGCCGCGCGGGTTCAGAGCTTGAGTCTCGA
326 ATGCCCGGGTCCCGGAGCCGCGCGGGTTCAGAGCTTGAGTCTCGA
15013905 CCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGTCGAGCGCCTCGAGGGAG
1 CCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGTCGAGCGCCTCGAGGGAG
*
15013970 GTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGAGAGAATGTCACGG
66 GTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGG
**
15014035 ACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGT
131 ACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGT
* ** *
15014100 TCACACCACCTTTGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAGGGGGCCAGAG
196 TCACACCATCTACGCCTTGTGAGGCGCCTTTTATAGGACAAAACCGTGAGGCCAGGGGGCCAGAG
* * * *
15014165 CGGACAATACCTCACAAGGGTGTGAACCGTGACGGTCAGGCTGATCCGGGACGTCGAAAGGGTGA
261 CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATTCGGGACGCCGGAAGGGTGA
* * *
15014230 ATGCGCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGA
326 ATGCCCGGGTCCCGGAGCCGCGCGGGTTCAGAGCTTGAGTCTCGA
15014275 CCCGTGACA
1 CCCGTGACA
15014284 CCCGCACGCT
Statistics
Matches: 721, Mismatches: 27, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
370 719 1.00
371 2 0.00
ACGTcount: A:0.23, C:0.26, G:0.35, T:0.17
Consensus pattern (370 bp):
CCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGTCGAGCGCCTCGAGGGAG
GTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGG
ACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGT
TCACACCATCTACGCCTTGTGAGGCGCCTTTTATAGGACAAAACCGTGAGGCCAGGGGGCCAGAG
CGGACAATACCTCACAAGGGTGTGAACCGTGGCGGTCAGGCTGATTCGGGACGCCGGAAGGGTGA
ATGCCCGGGTCCCGGAGCCGCGCGGGTTCAGAGCTTGAGTCTCGA
Found at i:15022308 original size:744 final size:739
Alignment explanation
Indices: 15021310--15022656 Score: 1891
Period size: 740 Copynumber: 1.8 Consensus size: 739
15021300 AAGTTTGGGG
** * **
15021310 CCAAAACTCCTTCCAAAAAAATTTTAGAAAATCCTGAACCGTAAAAAGTTTCCAAAATCATGAAA
1 CCAAAACTCCTTCCAAAAAAATTTTAGAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAA
* ** * * *
15021375 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTT
66 AATAAAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATT
* * *
15021440 TACATGCCATAAAAATGGCATTGGCATCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
131 TACAAGCAATAAAAATGGCATTGGCATCCAGAAATATGAAGATGTACCTAAACCCACCTACCACC
*
15021505 CTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCTTC
196 CTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C--C
* * * *
15021570 CGCTCATTTCGTCGGTTGGCTTAGGTAG-ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
257 CGCTCATTTCATCGATTGGCTTAGG-AGTACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACC
** * * ** *
15021634 GAGGGTTGTGGTAGCAAGATC-AGCAGCACATAGAGGGGGA-CTCGACCGATCCCTGGCTTGCGC
321 GAGGGTTGCAGCAGCAAGATCGA-CAGCACACAGAGGGGGACCT-GACCGATCCCCCGCTTGCAC
* * * * ** * * * *
15021697 ATCTCGCCCCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTCGGCATATGGA
384 ATCCCGCCCCTCCGGCCGACTGAAAGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAA
* *
15021762 GTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGGACCAAGGGTTG
449 GTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCAAAGATCAGACCAGACCAAGGGTTG
* * *** *
15021827 CGGCTGCACATGCTAGGCTC-GAGCCTGTGCTGGTGCTGTATTTTTCTTCACTGAGGCACCATC-
514 CGGCAGCACATGCTAGGCTCAG-GCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCG
* *
15021890 ACCGGAGCATCATCGGAGAACCTGACCGGTGGCATTGGGGTACCGACGACATTAGGGTTCCGGCG
578 A-AGGAG-ATCATCAGAGAACCTGACCGGTGGCATTGGGGTACCGACGACATTAGGGTTCCGGCG
15021955 ATCGGGGGGCCGAGGGGGGTGTGCACACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTT
641 ATCGGGGGGCCGAGGGGGGTGTGCACACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTT
15022020 TTATGCACGCCAATAAAAATTCAAGGATCACGTC
706 TTATGCACGCCAATAAAAATTCAAGGATCACGTC
* * *
15022054 CCAAAACTCCTTTCGAAAAAATTTTCA-AAAATCCCAAACCGCAAAAAGTTTAAAAAATCGTGAA
1 CCAAAACTCCTTCCAAAAAAATTTT-AGAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAA
*
15022118 AAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCGTGAAT
65 AAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAAT
* *
15022183 TTACAAGCAATAAAAATGGCATTGGCA-CATAGAAATATGAAGATGTACCTAAACCCACGTACCA
130 TTACAAGCAATAAAAATGGCATTGGCATC-CAGAAATATGAAGATGTACCTAAACCCACCTACCA
*
15022247 CCCTATCGATCCACGGCTTGCGCATCCCG-CCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCC
194 CCCTATCGATCCACGGCTTGCGCATCCCGTCC-CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * *
15022311 GCTCGTTTCATCGATTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA
258 GCTCATTTCATCGATTGGCTTAGGAGTACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA
* * * *
15022376 GGGTTGCAGCAGCAGGATCGACAGCACGCAGAGTGGGACCTGGCCGATCCCCCGCTTGCACATCC
323 GGGTTGCAGCAGCAAGATCGACAGCACACAGAGGGGGACCTGACCGATCCCCCGCTTGCACATCC
* *
15022441 CTCCCCTCCGGCCGACTGAAAGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
388 CGCCCCTCCGGCCGACTGAAAGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * * **
15022506 ATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
453 ATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCAAAGATCAGACCAGACCAAGGGTTGCGGC
* * *
15022571 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGAAGGA
518 AGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGAAGGA
15022636 GATCATCAGAGAACCTGACCG
583 GATCATCAGAGAACCTGACCG
15022657 ACAGCATTTG
Statistics
Matches: 525, Mismatches: 70, Indels: 21
0.85 0.11 0.03
Matches are distributed among these distances:
739 20 0.04
740 270 0.51
741 5 0.01
742 1 0.00
743 3 0.01
744 225 0.43
745 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (739 bp):
CCAAAACTCCTTCCAAAAAAATTTTAGAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAA
AATAAAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATT
TACAAGCAATAAAAATGGCATTGGCATCCAGAAATATGAAGATGTACCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
CATTTCATCGATTGGCTTAGGAGTACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGG
TTGCAGCAGCAAGATCGACAGCACACAGAGGGGGACCTGACCGATCCCCCGCTTGCACATCCCGC
CCCTCCGGCCGACTGAAAGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
CCCAATCTAAGCATACGAAGTTCATTCCCAGTCAAAGATCAGACCAGACCAAGGGTTGCGGCAGC
ACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGAAGGAGAT
CATCAGAGAACCTGACCGGTGGCATTGGGGTACCGACGACATTAGGGTTCCGGCGATCGGGGGGC
CGAGGGGGGTGTGCACACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTATGCACGC
CAATAAAAATTCAAGGATCACGTC
Found at i:15022529 original size:26 final size:26
Alignment explanation
Indices: 15022493--15022545 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15022483 GTTGACTTAG
*
15022493 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15022519 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15022545 G
1 G
15022546 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15024823 original size:888 final size:879
Alignment explanation
Indices: 15022519--15025852 Score: 4328
Period size: 877 Copynumber: 3.8 Consensus size: 879
15022509 CCTAGTCTAA
* *
15022519 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGTACCAGACCGAGGGTTGTGGCAGCACATGCTGG
*
15022583 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT-CGA--A-GGAG-ATCATC
66 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATGCGAGCATGGAGCATCATC
* *
15022643 AGAGAACCTGACCGAC-AGCATT-TGGTTTCCAGCGATCAGGGGGGCCTGGGGGGTGTGCGCACA
131 AGAGAACCTGACCGACGA-CATTGTGG-TTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACA
* * * *
15022706 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGACCCCCTATCCCTCAACAAACCTCGAG
193 TGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
15022771 AACTCACACCGCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAACATGT
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-ATGT
* * * *
15022836 CTGAAATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGATTTTTTAGATGAAT
322 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
15022901 TTTTTTGTACAAGCCAACAAAAGTATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
387 TTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
** ** * * *
15022966 TGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGCAAAATAAAAAACAAG
452 CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
15023031 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAA
517 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
15023096 AATGGCATTGGCACCCAGAAATACGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCA-A
582 AATGGCATTGGCACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACA
* *
15023160 GGCTTGCACATCCCGTCTCTCT-GACTGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
647 -GCTTGCGCATCCCGTCTCTCTAG-CCGACGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCG
* **
15023224 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAGGAGGGTTGCGGC
709 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * * *
15023289 AGCAGGATCGGTAGCACGCAGAGGGGGACCTGGCCGATCCTCGACTTGCGCATCCCGCCCCTCTG
774 AGCAGGATCGGTAGCATGCAGAGGGGGACC-GACCGATCCACGGCTTGCGCATCCCGCCCCTCTG
* * *
15023354 GCCGGCTGAGTGCCTGCACGCTCGTTTCGTAGGTTGACTTAG
838 GTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15023396 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCAAGGGTTCTGGCAGCACATGTTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGTACCAGACCGAGGGTTGTGGCAGCACATGCTGG
* *
15023460 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT-C-ACCA--GAGCATCA-C
66 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATGCGAGCATGGAGCATCATC
** * * * * *
15023520 TAGAGAACCTGACCGGTGGCATTTTGGTTCCGACGATCGGGTGGGTCGGGGGGTGTGCGCACATG
131 -AGAGAACCTGACCGACGACATTGTGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
15023585 ATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
195 ATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
15023650 CTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAATGTCT
260 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAATGTCT
15023715 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
15023780 TTTTGTGCATGCCAACAAAATTACAAGGATCACATCTACCAAGGTTGGGGCCAAAACTCCTTCCA
389 TTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * * * * *
15023845 AAAAAATTTAAAAAAATCTCGAATCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
454 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
15023910 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAA
519 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
15023975 TGGCATTGGCACACAAAAATATGAAGATGCACCTAAACCTACCTACCACCCTATCGATCCCCAGC
584 TGGCATTGGCACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACAGC
* * * * * *
15024040 TTGTGCATCCCATTTCTCTGGCC-AGTGTAGTGCCCGCCCGCCTGCCCGCCTGCTCGTTTCGTCG
649 TTGCGCATCCCGTCTCTCTAGCCGA-CGTAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCG
* * * * *
15024104 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGATGGTTCCGGTAGC
712 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* * *
15024169 AGGATCGGTAGCATGCAGAGGGGGACACGACCGATCCACGGCTTGTGAATCCTGCCCCTCTGGTC
777 AGGATCGGTAGCATGCAGAGGGGGAC-CGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTC
* *
15024234 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
841 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
15024273 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAGACCGCGTGTTGTGGCAGCACAT-CTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGTACCAGACCGAGGGTTGTGGCAGCACATGCTGG
* * ** *
15024336 GCTCGGGCATGTGCTCGTGCCAAATTTTTCTTCGCTAGGGCTCCATCGCCAGAGCATCGCTGGAG
66 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT-G-C-GAGCA----TGGAG
* * * * *
15024401 CATCACCAGAGAACCTGACCGACGACATTGAGGTTTCGGTGATCGGGGGGGCCGAGGTGGTGTGC
124 CATCATCAGAGAACCTGACCGACGACATTGTGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGC
15024466 GCACATGATGTGCGATTGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
188 GCACATGATGTGCGA-TGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
15024530 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
252 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
15024595 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
317 AA-TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * * ** * ****
15024660 CTGAAGTTTTTTATGCAAGTCAATAAAAATACATGGATCATTTCTACCTAGTTTGGAATTAAAAC
381 CTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
*
15024725 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAGAGAA
446 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
15024790 AACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
511 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * ** *
15024855 CATAAAAATGGCGTTGGCACGCAGAAATATAAAGATGTTCTTAAACCCACCTACCACCCTATCGA
576 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGA
* * *
15024920 TCCACGGCTTGCGCATCCTGTCTCTCTAGCCGACATAGTGCCCG--C-CCGCCCGCCCGCTCGTT
641 TCCACAGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTT
* * * *
15024982 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTGT
706 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * * * *
15025047 AGCAGCAGGATTGGCAGCATGCAGAGGAGGACCCAGCCGAT-CACCGGCTTGCGCATCCCGCCCC
771 GGCAGCAGGATCGGTAGCATGCAGAGGGGGACCGA-CCGATCCA-CGGCTTGCGCATCCCGCCCC
* *
15025111 TCTGGTCGGCTGAGTGCCCGGACGTTCGTTTCGTGGGTTGACTTAG
834 TCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15025157 GCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTACGATCGGACTGGAT
1 GCATACGAAGTTCATTCCCAGTCTAAG-AT-C--AG-----T---A--C--C-A---GAC-----
** **
15025222 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGG
41 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
* * *
15025287 CACCAT-CG-TC--GGAGCATCGTCAGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGAG
106 CACCATGCGAGCATGGAGCATCATCAGAGAACCTGACCGACGACATTGTGGTTCCGGCGATCG-G
* * *
15025348 GGGGCCCGGGGGGGTGTGCACACATGATGTGCGATGGTTGCTGGTACTTAGCCCTTATATTGGCC
170 GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCC
* * * * *
15025413 CCCTAACCTTCATCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTATAGGTT
234 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
15025478 TGCTGCCAGTAGCC-----A--T-T-AAA----G----TTTTTTCAAATGGTCACAAAATTTTGT
299 TGCTGCCAGTAGCCATTAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
15025526 ACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACC
364 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACC
* * *
15025591 AAGTTTTGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
429 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * * * *
15025656 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGGTTAAGGGACCAT
494 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
15025721 TGTATGAGTTTACAAGCCATAAAAAAGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCC
559 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGCGCCTAAACCC
* *
15025786 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTAGCCGACGTAGTGCCCGCCCG
624 ACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCG
15025851 CC
689 CC
15025853 CGCGCACCCG
Statistics
Matches: 2155, Mismatches: 237, Indels: 121
0.86 0.09 0.05
Matches are distributed among these distances:
876 48 0.02
877 784 0.36
878 44 0.02
879 4 0.00
881 3 0.00
883 317 0.15
884 187 0.09
885 5 0.00
886 4 0.00
887 49 0.02
888 455 0.21
889 4 0.00
891 3 0.00
892 1 0.00
893 1 0.00
896 1 0.00
897 1 0.00
900 47 0.02
901 130 0.06
902 2 0.00
905 3 0.00
906 1 0.00
907 1 0.00
908 1 0.00
910 18 0.01
911 41 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGTACCAGACCGAGGGTTGTGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATGCGAGCATGGAGCATCATC
AGAGAACCTGACCGACGACATTGTGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
TCGGTAGCATGCAGAGGGGGACCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTCGGCTG
AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15025194 original size:26 final size:26
Alignment explanation
Indices: 15025157--15025207 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15025147 GTTGACTTAG
15025157 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
15025183 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAATCTA
15025208 CGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15025862 original size:8 final size:8
Alignment explanation
Indices: 15025851--15025887 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
15025841 TGCCCGCCCG
15025851 CCCGCGCA
1 CCCGCGCA
*
15025859 CCCGCACA
1 CCCGCGCA
*
15025867 CCTGCGCA
1 CCCGCGCA
15025875 CCCGCGCA
1 CCCGCGCA
15025883 CCCGC
1 CCCGC
15025888 CTGCTTGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.14, C:0.62, G:0.22, T:0.03
Consensus pattern (8 bp):
CCCGCGCA
Found at i:15026746 original size:713 final size:702
Alignment explanation
Indices: 15025183--15027360 Score: 2809
Period size: 713 Copynumber: 3.0 Consensus size: 702
15025173 CCCAATCTAA
* * ** *
15025183 GCATACGGAGTTCATTCCCAGTCTACGATCGGACTGGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTAGG
* *
15025248 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCA--TTT-TTC-T----------TCGTCGGAGCATCGTCGGAGA
* * * * *
15025313 ACCTGACCGACGACATTGGGGTTCCGGCGATCGAGGGGGCCCGGGGGGGTGTGCACACATGATGT
117 ACCTGAACGGCGACATTAGGGTTCCGGCGATCG-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
15025378 GCGATGGTTGCTGGTACTTAGCCCTTATATTGGCCCCCTAACCTTCATCAAACCTCAAGAACTCA
181 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCA
* *
15025443 CACTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC-----A---T-T---A
246 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15025496 -----AAGTTTTTTCAAATGGTCACAAAATTTTGTACACTTTGATTTTTTAGCTGAATTTTTTTG
311 TGGGGAAGTTTTTTCAAATGGTCACAAAATTTT-TACACTTCGA-GTTTTAGCTGAATTTTTTTG
*
15025556 TGCATGCCAACAAAAATAC-AAGGATCACCTCTACCAAGTTTTGGGCCAAAACTCCTTCGAAAAA
374 TGCATGCCAACAAAAATACGAAGGATCACCTCTACCAA-TTTTGGGCCAAAACTCCTTC-CAAAA
*
15025620 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATG-AGTCGTC
437 AATTTTAAAAAATCACGAACCACAAAAAGTTTC-AAAATCGTGAAAAATAG-AAATGCAGTCGTC
* *
15025684 TTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAAAGG
500 -TGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAGTTTACAAGCCATTAAAAAGG
*
15025749 CATTGGCAG-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
564 CATTGGCAGCG-AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
15025813 GCGCATCCCGTCTCCCTAGCCGACGTAGTGCCCGCCCGCCCGCGCACCCGCACACCTGCGCACCC
628 GCGCATCCCGTCTCTCTAGCCGACGTAGT----GCCCG-CC-CG--CCCG------T--------
15025878 GCGCACCCGCCTGCTTGTTTCGTCGGTTGGCTTAG
671 -C-CACCCGCCTGCTTGTTTCGTC-GTTGGCTTAG
* * * *
15025913 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTAGG
* * *
15025978 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGAGCATCGCCGGAGAACCTGAACGGCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGAGCATCGTCGGAGAACCTGAACGGCGAC
* *
15026043 ATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGATGGT
131 ATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
15026108 ACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
196 ACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
15026173 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATAGTTTTTT
261 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA-AGTTTTTT
*
15026238 CAAATGGTCACAAAATTTTTACACTTCGAGTTTTAGCTGAATTTTTTTTGTTGCATACCAACAAA
325 CAAATGGTCACAAAATTTTTACACTTCGAGTTTTAGCTGAA-TTTTTTTG-TGCATGCCAACAAA
*
15026303 AATACGAAGGGATCACCTCTACCCAATTTTGGGCCAAAAAATCCTTCCAAAAAATTTTTAAAAAA
388 AATACGAA-GGATCACCTCTA-CCAATTTTGGGCC-AAAACTCCTTCCAAAAAA-TTTTAAAAAA
* ** * *
15026368 TCTCGAACCGTAAAAAGTTTCAAAATCATGAAAAAATAGAAATGCAGTCGTC-GCCAGCGAAACT
449 TCACGAACCACAAAAAGTTTCAAAATCGTG-AAAAATAGAAATGCAGTCGTCTGCCA-TGAAACT
15026432 TCACGTGAAGGGTTAAGGGACCATTGTAT-AGTTTACAAGCCATTAAAAAGGCATTGGCATGCAG
512 TCACGTGAAGGGTTAAGGGACCATTGTATGAGTTTACAAGCCATTAAAAAGGCATTGGCA-GC-G
15026496 AGAAATATGAAGATTGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
575 AGAAATATGAAGA-TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
15026561 CTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCACCCGCCTGCTTGTTTCGTCGTTTGGCTTAG
639 CTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCACCCGCCTGCTTGTTTCGTCG-TTGGCTTAG
*
15026626 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACACGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTAGG
* *
15026691 CTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGAGCATCGTCGGAGAACCTGAACGGCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGAGCATCGTCGGAGAACCTGAACGGCGAC
15026756 ATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
131 ATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
15026821 ACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGG
196 ACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
15026886 CATTTAAGATTTTACAAGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
261 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA-AGTTTTTT
* * *
15026951 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAA
325 CAAATGGTCACAAAAT-TTTTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
15027016 AA-A-GCAAGGATCACGTCTA-CGATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
388 AATACG-AAGGATCACCTCTACCAAT-TTT-GGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAA
* * *
15027078 TCAGGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAA-ACGAGTCGTCTTGCCATGAAAC
449 TCACGAACCACAAAAAG-TTTCAAAATCGTGAAAAATAGAAATGC-AGTCGTC-TGCCATGAAAC
* *
15027142 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCA-CG
511 TTCACGTGAAGGGTTAAGGGACCATTGTATGAGTTTACAAGCCATTAAAAA-GGCATTGGCAGCG
* * *
15027205 TAGAAATGTGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGT
575 -AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * ** * * * *
15027270 CTCTCTGGTCGACGTAGTGCCCGCCATCTCG--C-CCGGCC-GCTCGTTTTGTCAGTTGGCTTAG
639 CTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCACCCGCCTGCTTGTTTCGTC-GTTGGCTTAG
* *
15027331 GTATACGGAGGTCATTCCCAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
15027361 AGAATGGACT
Statistics
Matches: 1312, Mismatches: 89, Indels: 119
0.86 0.06 0.08
Matches are distributed among these distances:
705 47 0.04
706 6 0.00
707 1 0.00
709 80 0.06
710 68 0.05
711 74 0.06
712 30 0.02
713 367 0.28
714 21 0.02
715 146 0.11
716 47 0.04
720 1 0.00
723 2 0.00
724 1 0.00
726 1 0.00
727 4 0.00
728 3 0.00
729 4 0.00
730 78 0.06
731 13 0.01
732 20 0.02
733 50 0.04
734 35 0.03
735 75 0.06
736 70 0.05
737 68 0.05
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (702 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGAGCATCGTCGGAGAACCTGAACGGCGAC
ATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAGTTTTTTC
AAATGGTCACAAAATTTTTACACTTCGAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACGAAGGATCACCTCTACCAATTTTGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCACGAA
CCACAAAAAGTTTCAAAATCGTGAAAAATAGAAATGCAGTCGTCTGCCATGAAACTTCACGTGAA
GGGTTAAGGGACCATTGTATGAGTTTACAAGCCATTAAAAAGGCATTGGCAGCGAGAAATATGAA
GATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGA
CGTAGTGCCCGCCCGCCCGTCCACCCGCCTGCTTGTTTCGTCGTTGGCTTAG
Found at i:15029902 original size:26 final size:26
Alignment explanation
Indices: 15029868--15029917 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15029858 GACTTAGGTA
15029868 TACGAAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
* *
15029894 TACGGAGTTCGTTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
15029918 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:15031504 original size:26 final size:26
Alignment explanation
Indices: 15031481--15031533 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
15031471 TAGGCATATG
15031481 GAGTTCATTCCCAGTCTAAGCATACA
1 GAGTTCATTCCCAGTCTAAGCATACA
15031507 GAGTTCATTCCCAGTCTAAG-AT-CA
1 GAGTTCATTCCCAGTCTAAGCATACA
15031531 GAG
1 GAG
15031534 CGAACCGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 5 0.19
25 2 0.07
26 20 0.74
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATACA
Found at i:15035917 original size:866 final size:861
Alignment explanation
Indices: 15033909--15037171 Score: 4053
Period size: 872 Copynumber: 3.7 Consensus size: 861
15033899 ATCGCCGGAG
* * * *
15033909 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATC-GAGGGGCCGGGGGGGTGTCC
1 CATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGC
*
15033973 GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
15034038 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGTCACTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
15034103 ATTGTTTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCAAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * * * *
15034168 TGAATTTTTTTGTGCAAGCC-AACAAAAATAGAAGGATCACGTCCACCAAGTTTGGGGCTAAAAT
261 TAAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
** * * ** *
15034232 TCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAGGAACAGAA
326 TCCTT-TCGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
* * * * *
15034297 AATGAGTCTTCTTGCCATGAAGCTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAAGC
390 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * ** *
15034362 CATAAAAATGGCATTGAAAAACAGAAATATGAAGATGCGCCTAAACCCACCCACCACCCTATCGA
455 CATAAAAATGGCATTGGCATACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA
* * * * * *
15034427 TCCACGGTTTGCGCATCCCTTCTCTCTGGCTGACGTAGTGCCCG--CCCACCCGCCCGCTCGTTC
520 TCCACGGCTTACG-ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCACCCACCTGCCCGCTCGTTT
* * * * * * *
15034490 CGTCGGTTGGCATAGGCATACAGAGTTCATTTCCAATCTAAGATTGGATTGAACCAAGGTTTGCG
584 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACCAAGGGTTGCG
* * ** * * *
15034555 GTAGCAAGATCGGCCGCACGCAGAGGCGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTC
649 GTAG-AAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCTCCCTTC
* * ** *
15034620 TGGTCGGCTGAACGCTCGCACGCTCATTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAG
713 TGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGGATATGGAGTTCATTCCCAG
* * * *
15034685 TCTAAGATCAGACCAGACTGAGGGCTGCAGCAGCACATACTTGGCTCGGGCATGTGCTGGTGCCG
778 TCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCACATAC-TGGCTCGGGCATGTGCTGGTGCCG
*
15034750 TATTTTTCTTCGCTGGGGCAC
842 CATTTTTCTTC-CTGGGGCAC
* * *
15034771 CATCGCCGGAGCATCACCGGGGAACCTGACCGGGGGCA-TCGGGTTCCGGCGATCGGGGGGGCC-
1 CATCACCGGAG-A--ACC--TG-ACC-GA-C---GGCATTAGGGTTCCGGCGATCGGGGGGGCCG
15034834 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
55 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
15034899 CTCATCAAACCTCGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
120 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
15034964 ATAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
185 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
15035029 GAGGTTTTAGCTAAAGTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTT
250 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
15035093 AGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATTGT
315 GGGGCCAAAACTCCTTTCG-AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGT
* *
15035158 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATG
379 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
15035223 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAAGCCACCTAC
444 AATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTACCTAAACCCACCTAC
* * *
15035288 CACCCTATCGATCCATGGCTTACGATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCACGCTCACCT
509 CACCCTATCGATCCACGGCTTACGATCCCGTCTCTCTGGCCGACGTAGTGCCCGCAC-C-CACCT
* *
15035353 GCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA
572 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAA
* * * * * *
15035418 TCAAGGGTTGCGATAGTAGTATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGTTTACGC
637 CCAAGGGTTGCGGTAGAAG-ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
** * *
15035483 ATCCCTCCCTTCTGACCGACTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGGATATGGA
701 ATCCCTCCCTTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGGATATGGA
15035548 GTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCACATACTGGACTCGGGCAT
766 GTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCACATACTGG-CTCGGGCAT
*
15035613 GTGCTGGTGCCACATTTTTCTTCCTCGGGGCAC
830 GTGCTGGTGCCGCATTTTTCTTCCT-GGGGCAC
* * * **
15035646 CATCACCGGAGAACTTGACCGACGGCATTAGGGTTCCGACGATCAGGGGGGCCGGGTAGGTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGC
* *
15035711 GCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
15035776 TCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
15035841 AGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
15035906 TGAATTTTTTTGTGCATGCCAAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
261 TAAATTTTTTTGTGCATGCC-AAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * ** **
15035971 CTCCTTTCGAAAAATTGTAAAAAATCTCGAACCGTAAAGAGTTTCAAAAATTATGAAAAATAGAA
325 CTCCTTTCGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
* * *
15036036 AACGAGTTGTCTTGCCAT-AAAATTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
390 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
15036100 CATAAAAATGGCATTGGCACACA-AAAAATTGAAGACGTACCTAAACCAACCTACCACCCTATCG
455 CATAAAAATGGCATTGGCATACAGAAATA-TGAAGATGTACCTAAACCCACCTACCACCCTATCG
* * * *
15036164 ATCCATGGCTTGCAC-ATCCTGTCTCTCTGGCCGGCGTAGTG-CC-CA--C-CC-GTCCGCTCGT
519 ATCCACGGCTT--ACGATCCCGTCTCTCTGGCCGACGTAGTGCCCGCACCCACCTGCCCGCTCGT
* * * ** *
15036222 TTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTG
582 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACCAAGGGTTG
* * * * *
15036287 TGGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCTGCCT
647 CGGTAG-AAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCTCCCT
* * * *
15036351 CTCTGGTTGGCTAAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGAAAAATGAAGTTCATTCC
711 -TCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG------G--G--------
* * *
15036416 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAC
759 -A---T----AT--GGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAC
* * * * *
15036481 ATGCTGGGTTCGGGCATGTGCTGTTGCCGCATTTTTTTTCATTGGGGCAAC
814 ATACT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTGGGGC-AC
* * * * * * *
15036532 ATCGTCGGAGCATCGCCAGAGAACCTGACCGGCTGCATTACGGCTCCGGCGACCGGGGGGGTCGG
1 --CATC--A-C--CG---GAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGG
* * * *
15036597 GGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCT
56 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
15036662 TCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTGTACAGGCTTGCTGCCAG
121 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
15036727 TAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
186 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
15036792 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTG
251 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
*
15036857 GGGCCAAAACTCCTTTCGAAAAATTTTAAAAAATCTCGAACCGCAAAGAG-TTTGAAAAATCGTG
316 GGGCCAAAACTCCTTTCGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTG-AAAATCGTG
* * * *
15036921 AAAAATAGAAAACGAGTCATCTTGCCATGACACTTCACGTGAAGGCGTAAGGGACCATTGTATTA
380 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
15036986 ATTTACAAGCCATAAAAATGGCATTGGCAT-GTGAAAATATGAACATGTGCCTAAACCCACCTAC
445 ATTTACAAGCCATAAAAATGGCATTGGCATACAG-AAATATGAAGATGTACCTAAACCCACCTAC
* * * * *
15037050 CACCCTATCGATCGACGGCTTGCTTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACT
509 CACCCTATCGATCCACGGCTTAC-GATCCCGTCTCTCTGGCCGACGTAGTGCCCG--CACCCACC
** * *
15037115 TGCCCGCTTATTTCATCGGTTGGCTTCGGCATACGGAGTTCATTCCCTGTCTAAGAT
571 TGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
15037172 CAGACCGGAC
Statistics
Matches: 2085, Mismatches: 234, Indels: 122
0.85 0.10 0.05
Matches are distributed among these distances:
858 6 0.00
859 150 0.07
860 3 0.00
861 1 0.00
862 10 0.00
863 1 0.00
864 4 0.00
865 32 0.02
866 322 0.15
867 93 0.04
868 55 0.03
869 5 0.00
870 2 0.00
871 27 0.01
872 445 0.21
873 12 0.01
874 9 0.00
875 259 0.12
876 1 0.00
879 1 0.00
883 2 0.00
885 85 0.04
886 5 0.00
888 3 0.00
890 1 0.00
891 1 0.00
893 2 0.00
894 3 0.00
895 116 0.06
896 372 0.18
897 6 0.00
900 1 0.00
902 1 0.00
903 1 0.00
904 48 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (861 bp):
CATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TAAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTTCGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTACGATCCCGTCTCTCTGGCCGACGTAGTGCCCGCACCCACCTGCCCGCTCGTTTCA
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACCAAGGGTTGCGGT
AGAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCTCCCTTCTGG
TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGGATATGGAGTTCATTCCCAGTCT
AAGATCAGACCGGACAGAGGGTTGCGGCAGCACATACTGGCTCGGGCATGTGCTGGTGCCGCATT
TTTCTTCCTGGGGCAC
Found at i:15040283 original size:717 final size:715
Alignment explanation
Indices: 15038904--15040364 Score: 2180
Period size: 717 Copynumber: 2.0 Consensus size: 715
15038894 CCCAGTCTAA
* * *** * *
15038904 GCATACGGAGTTCATTCCCACTCTAAGATCGGATTGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
15038969 TTCGGGCATGTGCTGTTGCCGCATTTTTCTTCATTAGGGCAACATCGTCGGAGCATCGCTAGAGA
66 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAGTAGGGCAACATCGTCGAAGCATCGCCAGAGA
* * * * *
15039034 ACCTGACCGGCTGCATTGCGGCTCCGACGATCGGGGGGGTCGGGGGGTTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGCGGCTCCAACGATCGGGGGGGCCGGGGGGATGTGCACACATGATGTG
*
15039099 CAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCTTCATCAAACCTCGAGAACTCAC
196 CAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15039164 ACCTCCTTAAAGAGCATTTGAGATTGTACAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTGTACAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTAAAAT
* * *
15039229 GGGGACATTTTTTTCAAATGGTCAAAAAATCTTGTACATTTCGAGTTTTTAGCTAAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGG
*
15039294 TGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
391 TGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15039359 ATTTTAAAAAATCTCGAACCGCAAAGAGTTTGAAAAATCGTGAAAAATAGAAAATGAGTCATCTT
456 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCATCTT
* * *
15039424 GCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCA
521 GCAATGACACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15039489 TTGGCATGTGAAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCT
586 TTGGCACGAGAAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
15039554 TATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGCCCGCTTATTTCATCGGTTGGC
651 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-C--GCCCGCTCATTTCATCGGTTGGC
*
15039619 TTCG
712 TTAG
*
15039623 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCATCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * *
15039688 CTT-GGGCATGTGCTGGTGCCGTATTTTTCTTC-GTCGTGGCAACATCGTCGAAGCATCTCCAGA
66 -TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAGTAG-GGCAACATCGTCGAAGCATCGCCAGA
* *
15039751 GAACCTGACCGGCGGTATTGGGGCTCCAACGATC-GGGGGGCCGGGGGGGATGTGCACACATGAT
129 GAACCTGACCGGCGGCATTGCGGCTCCAACGATCGGGGGGGCC-GGGGGGATGTGCACACATGAT
**
15039815 GTGGGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
15039879 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCGGTAGCCATTAAAGTGTCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTGTACAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTAA
** *
15039944 AATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
* * *
15040009 TGGTGCTTGCCAAAAAAAAA-A-ATGGATCATGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGA
388 TGGTGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-
* *
15040072 AAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCA
452 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCA
*
15040137 TCTTGCAATGAGACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCAATGACACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
15040202 GGCATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
582 GGCATTGGCACG-AGAAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * **
15040266 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCCCGCTCATTTTTTCGGTTGG
646 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGG
15040331 CTTAG
711 CTTAG
* *
15040336 GCAAACGGAGTTCATTCCCAGTGTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
15040365 TGGATTGGAG
Statistics
Matches: 669, Mismatches: 68, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
713 50 0.07
715 1 0.00
716 40 0.06
717 214 0.32
718 175 0.26
719 187 0.28
720 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (715 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAGTAGGGCAACATCGTCGAAGCATCGCCAGAGA
ACCTGACCGGCGGCATTGCGGCTCCAACGATCGGGGGGGCCGGGGGGATGTGCACACATGATGTG
CAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTGTACAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGG
TGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCATCTT
GCAATGACACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGAGAAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
Found at i:15040531 original size:26 final size:26
Alignment explanation
Indices: 15040495--15040547 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15040485 GTTGACTTAG
15040495 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
*
15040521 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
15040547 G
1 G
15040548 ATCGTACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:15041363 original size:899 final size:894
Alignment explanation
Indices: 15039623--15042957 Score: 4407
Period size: 899 Copynumber: 3.7 Consensus size: 894
15039613 GTTGGCTTCG
**
15039623 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCATCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
15039688 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGTGGCAACATCGTCGAAGCATCTCCAGAGA
65 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCATGGCACCATCGTCGAAGCATCGCCGGAGA
* * * *
15039753 ACCTGACCGGCGGTATTGGGGCTCCAACGATCGGGGGGCCGGGGGGGATGTGCACACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCTAACGATCGGGGGGCCGGGGGGG-TGTGCGCACATGATGTG
*
15039818 GGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15039883 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCGGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15039948 GGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15040013 GCTTGCCAA-AAAAA-AAAATGGATCATGTCTATCAAGTTTGGGGCCAAAACTCC-TTCCGAAAA
389 GCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCC-AAAA
* * * *
15040075 AATTTTAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15040140 TGCAATGAGACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
15040205 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15040270 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCCCGCTCATTT-TTTCGGTTGGCTT
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATT-GGTTGGCTT
* * ** * * * * *
15040334 AGGCAAACGGAGTTCATTCCCAGTGTAAGATTGGATTGGAGTGAGGGTTATGACAGCAAGATCGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACTGAGGGTTACGGCAGTAGGATCGG
* * * * *
15040399 TAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCTTTTGGCCGGCTGAGC
776 CAGCACGCA-AAGGGGACCCG-CCGAT-CTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGC
* * * *
15040464 GCCCGCAAGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTACATTCCCAGTCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15040521 GCATACGGAGTTCATTCCCAGTCTAAGATCGTACCAGACCGAGGGTTGCGGCAG-ATCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCGGCAGCA-CATGCTGG
*
15040585 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCATGGCACCATCGTCGAAGCATTGCCGGAG
64 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCATGGCACCATCGTCGAAGCATCGCCGGAG
* * * * *
15040650 AACCTGACCGGTGGCATTGGGGTTCTGACGATCGAGGGGGCCGAGAGGGTGTGCGTACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCTAACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
15040715 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15040780 CA-CCCCTTAAAGAGCATTTTAGATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15040844 TGGGGACACTATCTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15040909 GTGCATGCCAACAAAAGTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGC-TTCCAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAA
* * ** *
15040973 AACTTTTAAAAAATCTCAAACCGCAAAATGTTTTGAAAATCGTGAAAAAAAGAAAACGAGTCGTC
452 AA-TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15041038 TTGCCTTGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15041103 CATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15041168 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCTCCCGCCCGTCCGCTCGTTTCGTTGGTTGGCTT
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATTGGTTGGCTT
* * * * * *
15041233 AGGCATACGAAATTCATTACCAGTCTAAGATTGGACAAGATTGAGGGTTGCGGCAGTAGGATCGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACTGAGGGTTACGGCAGTAGGATCGG
* * * *
15041298 CAGCATGTAAAGTGGGACCCAGCCGATCTTCGGCTTG-CCTATCCTGCCCCTCTGGCCGACTGAG
776 CAGCACGCAAAG-GGGACCC-GCCGATC-TCGGCTTGTGC-ATCCCGCCCCTCTGGCCGACTGAG
** * * *
15041362 CGCTTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAG
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15041420 GCATACAGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * ** *
15041485 CTCCGA-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGAAG
65 CT-CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCATGGCACCATCGTCGAAGCATCGCCGGAG
*
15041549 AACCTGACCGGCGGCATTGGGGTTC-AAGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATC
129 AACCTGACCGGCGGCATTGGGGTTCTAA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
*
15041613 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCA
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15041678 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15041743 TGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
15041807 GTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAA
* *
15041872 AATTTTAAAAAATC-CTGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
15041936 TTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15042001 CATTGGCACGCATAAATATGAAGATGTG-CTGAAACACACCTACCACCCTATCGATCCACGCCTT
581 CATTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
15042065 TCGCATCCCGTCTCACTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGTTGGTTTCATCGGGT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--T--CCGCTCGTTTCAT-TGGT
** * *
15042130 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGTAG
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACTGAGGGTTACGGCAGTAG
* * * *
15042195 GATCGGCAGCACACAAACGGGGACCCGGTCGATCCCTGGCTTGTGCATCCCACCCCTCTGGCCGA
770 GATCGGCAGCACGCAAA-GGGGACCC-GCCGATCTC-GGCTTGTGCATCCCGCCCCTCTGGCCGA
** * * *
15042260 CTGAATGCCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
832 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
15042323 G-AT-C--A----A-----A--C------CG---A-ACCGAGGGTTACGGTTGCACATGCTGGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * * * * * *
15042363 TAGGGCATGTGCTGGAGTCGCA-TTTTCTTTGCCGA-GACACCATCGCCTG-AGCATCGTCGTAG
66 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-ATGGCACCATCGTC-GAAGCATCGCCGGAG
*
15042425 AACCTGACCGGCGGCATTGGGGTT-TCGACGATCGGGGGG-CGGGGGGTGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCT-AACGATCGGGGGGCCGGGGGG-GTGTGCGCACATGATG
* ** * *
15042488 TGTGATGGGTGCTGGTACTCAGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15042553 ACATCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
15042618 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * **
15042683 TGTGCATGCTAGCAAAAATACAAGGATCACGCCTTCCAAGTTTGGGGCCAAAAATCCTTTTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAA
* *
15042748 AAATTTTAAAAAATCACGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15042813 TTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15042878 CATTGGCACGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCAATCTACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
15042943 CGCATCCCGTCTCTC
646 CGCATCCCGTCTCTC
15042958 CGACCGGTGT
Statistics
Matches: 2167, Mismatches: 231, Indels: 99
0.87 0.09 0.04
Matches are distributed among these distances:
874 7 0.00
875 51 0.02
876 205 0.09
877 295 0.14
878 4 0.00
881 1 0.00
882 1 0.00
888 1 0.00
890 1 0.00
895 1 0.00
897 5 0.00
898 623 0.29
899 781 0.36
900 13 0.01
901 1 0.00
902 13 0.01
903 162 0.07
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCATGGCACCATCGTCGAAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCTAACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATTGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACTGAGGGTTACGGCAGTAGGATCGGCAGCA
CGCAAAGGGGACCCGCCGATCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15041427 original size:26 final size:26
Alignment explanation
Indices: 15041391--15041444 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
15041381 TGGGTTGACT
*
15041391 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAATTCATTCCCAGTC
15041417 TAGGCATACAGAATTCATTCCCAGTC
1 TAGGCATACAGAATTCATTCCCAGTC
15041443 TA
1 TA
15041445 AGATCGGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAATTCATTCCCAGTC
Found at i:15044987 original size:876 final size:866
Alignment explanation
Indices: 15043562--15046197 Score: 3441
Period size: 876 Copynumber: 3.0 Consensus size: 866
15043552 CCCAGTCTAA
* * * * * *
15043562 GCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTT-AAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGA-GGTTGTAGCAGCACATACTGGG
* ** * ** *
15043626 CTCGGGCATGTGCAGGTGCCGTATTTTTCTTCACCGGGGCACCATTGTGGGAGCAACGCCGGAGA
65 CT--TG-ATGTGC-GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
15043691 ACCTAACTGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
126 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** * * * *
15043755 CGATGGGTGCTGGTACTCAGCCCTTATATTGG-CCCTTATCCCTCATCAAACCTCGAGAGCTGAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAGAACTCAC
* *
15043819 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGACAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15043884 GGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * *
15043949 TGCATGTCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCTGAAAAA
385 TGCATG-CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
15044014 A-TTTAAAAGAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCT
449 ATTTTAAAA-AATCCCGAA-CGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
*
15044078 TGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * ** * *
15044143 ACTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGGCAACCCTATCGATCCACGACTTGC
576 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15044208 ACATCCTATTTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCATCGATTGG
641 GCATCC-ATCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGG
* * * * *
15044273 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGACCGAAGGTTACGATAGTAGGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGTAGCAGGAT
* * * * *
15044338 TGGCAGCACATAGAGGGGCACCCAGCCGATCCCCGGCTTGTGTATCCCGTCCCTCTGGCCGATTG
770 CGACAGCACATAGAGGGG-ACCC-GCCGATCCCCGGCTTGTGCATCCCATCCCTCTGGCCGGTTG
* * * *
15044403 AGCGCTCGCACGCTCGTTTCATCGGTTGACTTAG
833 AGCGCCCACAAGCTCGTTTCATGGGTTGACTTAG
* * *
15044437 GCATACGGAGTTAATTCCCAGTCTAAGATTGGATTGGACCGAGGATTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGG-TTGTAGCAGCACATACTGGG
* * *
15044502 CTTAAGATTGTGCTGGTGCCGTATTTCTCTTCGTCGGGGCACCATCGCCAGAGCATTGCCGGAGA
65 CTT--GA-TGTGC-GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
15044567 ACTTGACCGACGACATTGGGGTTCCGGCGATC-GGAGGGCCGGGGCGGGTGTGCGTACATGATGT
126 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGT
* * ** *
15044631 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTGTTTCTCATCAAACCTTAAGAACACA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-AGAACTCA
* * *
15044696 CACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15044761 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * * **
15044826 -TGCAGGCCAACAAAATTATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
384 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * * * *
15044890 AATTTTTAAAAATCCCAAATCGCAAAAGTTTAAAAAATTATGAAAAATAGAAAACGAGTCGTCTG
448 AATTTTAAAAAATCCCGAA-CGCAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
* *
15044955 GCCATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15045020 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
577 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * *
15045085 CATCCCGTCTCCCTGGCTGGCGCAGTGCCCGCCCGCCTGCCTGCCCGCTTC-TTTCGTCGGTTGG
642 CAT-CCATCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGC-TCGTTTCATCGATTGG
*
15045149 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGTAGCAGGAT
* * * *
15045214 CGACAGCACACAGAAGGGGACCCGATCGATCCCCGACTTGCGCATCCCATCCCTCTGGCCGGTTG
770 CGACAGCACATAG-AGGGGACCCG-CCGATCCCCGGCTTGTGCATCCCATCCCTCTGGCCGGTTG
* **
15045279 AGCGCCCACAAGCTCTTTTTGTGGGTTGACTTAG
833 AGCGCCCACAAGCTCGTTTCATGGGTTGACTTAG
* * * * *
15045313 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGG--GTTGC-GGAC--A-TGTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGTTGTAGCAGCACATACTGGGC
*
15045372 -T-A-GTGC--T---GTATTTTTCTTCGTCGGGGCACCATCGGCGGAGCATCGCCGGAGAACCTG
66 TTGATGTGCGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* *
15045429 ACCGACGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATAATGTGCGATG
131 ACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
15045494 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAGACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAGAACTCACACCCC
* *
15045559 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATAGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
15045624 CACTTTTGTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAATTTTTTTGTGCA
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCA
*
15045688 TGCCAAAAGAAATACATGGAT-ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
389 TGCCAAAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* *
15045752 TAAAAAATCTCGAACAACAAAAGGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
453 TAAAAAATCCCGAAC-GCAAAA-GTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
* *
15045817 TGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
15045882 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATC
581 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ** * * *
15045947 CAGTCTCTCTGGTCGGTGTAGTGCTTGCCCGCCCGCCCGGCTGCTTGTTTCATC-AGTTGGCTTA
646 CA-TCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGA-TTGGCTTA
* * * * * * *
15046011 AGCATACGGATTTCATTCCCAGTCTAAGATCGGACCAGACC-AAGGGTTGTGGCAGCAAGATCGA
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAA-GGTTGCGGTAGCAGGATCGA
* * * * * *
15046075 CAGCACGTAGAGGAGGACCTGGCTGATCCCCGGCTTGTGCATCCCACCCCTCTAGTCGGTTGAGC
773 CAGCACATAGAGG-GGACC-CGCCGATCCCCGGCTTGTGCATCCCATCCCTCTGGCCGGTTGAGC
* *
15046140 ACCCACAAGATCGTTTCATGGGTTGACTTAG
836 GCCCACAAGCTCGTTTCATGGGTTGACTTAG
* *
15046171 GCATACAGAGTTCATTCCCCGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
15046198 CATACGGAGT
Statistics
Matches: 1533, Mismatches: 200, Indels: 73
0.85 0.11 0.04
Matches are distributed among these distances:
856 1 0.00
857 330 0.22
858 388 0.25
859 1 0.00
860 1 0.00
863 4 0.00
865 1 0.00
868 1 0.00
869 4 0.00
870 1 0.00
872 3 0.00
873 4 0.00
874 2 0.00
875 47 0.03
876 473 0.31
877 122 0.08
878 150 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (866 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGTTGTAGCAGCACATACTGGGC
TTGATGTGCGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
ACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
AAAATCCCGAACGCAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCATCT
CTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGTAGCAGGATCGACAGCACAT
AGAGGGGACCCGCCGATCCCCGGCTTGTGCATCCCATCCCTCTGGCCGGTTGAGCGCCCACAAGC
TCGTTTCATGGGTTGACTTAG
Found at i:15046201 original size:26 final size:26
Alignment explanation
Indices: 15046171--15046249 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15046161 GTTGACTTAG
*
15046171 GCATACAGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15046197 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15046223 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15046249 G
1 G
15046250 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15047307 original size:26 final size:26
Alignment explanation
Indices: 15047270--15047322 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15047260 GTTGACTTAG
15047270 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15047296 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15047322 G
1 G
15047323 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15048193 original size:26 final size:26
Alignment explanation
Indices: 15048157--15048209 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15048147 GTTGACTTAG
15048157 GCATACAGAGTTCATTC-CTAGTCTAA
1 GCATACAGAGTTCATTCTC-AGTCTAA
15048183 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
15048209 G
1 G
15048210 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:15051890 original size:904 final size:903
Alignment explanation
Indices: 15050134--15052971 Score: 4124
Period size: 903 Copynumber: 3.1 Consensus size: 903
15050124 TCCTTCCATT
*
15050134 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *
15050199 CTGGA-TCGAGGGTTGCAGTAGCAGGATCAGCAGTACGTAGAGGGGAACCCGGCCGATCCCCGGC
66 CTGGACTCGAGGGTTGCAGTAGCAGGATCAGCAGCACGTAGAGGGGAACCCGACCGATCCCCGGC
* * * * * *
15050263 TTACGTATCTCGCCCCTCTGG-CATGCTGATCGCCCGCACGCTCGTTTTGTGGGTTAACTTAGGC
131 TTACGCATCTCACCCCTCTGGTC-GGTTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
15050327 ATACATAGTTCATTCCCAGTC-AACCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
195 ATACATAGTTCATTCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
* * *
15050391 AGGGTTGC-AGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGC
260 AGGGTTGCGA-CAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
*
15050455 ACCATCGCCAGAGCATCACC-GAAGAACCTGATTGGCGGCATTGGGGTTCCGACGATCGGGGGGG
324 ACCATCGCCAGAGCATCACCGGAA-AACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
15050519 CTGGGGGGTGTGTGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
388 CCGGGGGGGGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
15050584 CCCTCATTAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTAGCTGC
453 CCCTCATTAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
15050649 CAGTAGCCATTAAAGTGTCTGAAGTGGGGTCACTTTTTTCAAATGGTCAAAAAATCTTGTACACT
518 CAGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
15050714 TCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAACAAAAACACAAGGATGACGTCTACCAAGTT
583 TCGAGTTTTTAGCTGAA-ATTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTT
* * * *
15050779 TGTGGCCAAAACCCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCA
647 TGTGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCG
*
15050844 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
712 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
15050909 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATCTGCCTAAACCTACCTA
777 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTA
*
15050974 CCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGAGCCCGCCCGCC
842 CCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * *
15051036 CGCCCTGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATA-GGTAATTCATTCCCAGTCTAAGGTCG
1 CGCCC-GTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCG
** * **
15051100 GACTGGACT-GAGGGTTGTGGTTA-TAGGATCAGCAGCACGTAGAGGGGAACCCGGTCGATCCCC
64 GACTGGACTCGAGGGTTGCAG-TAGCAGGATCAGCAGCACGTAGAGGGGAACCCGACCGATCCCC
*
15051163 GGCTTACGCATCCCACCCCTCTGGTCGGTTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
128 GGCTTACGCATCTCACCCCTCTGGTCGGTTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15051228 GCATACATAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
193 GCATACATAGTTCATTCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* *
15051293 CAAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGG
258 CGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
*
15051358 CACTATCGCCAGAGCATCACCGGAAAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGG
323 CACCATCGCCAGAGCATCACCGGAAAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGG
15051423 CCGGGGGGGGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
388 CCGGGGGGGGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** *
15051488 CCCTCATTAAACCTTTTGAACTCA-CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
453 CCCTCATTAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
15051552 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATT
518 CAGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
15051617 TCGAGTTTTTAGCTGAAGATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
583 TCGAGTTTTTAGCTGAA-ATTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTT
* * * ** * *
15051682 TCGGGGCCAAAACT-CATCCTGAAAAAATTTTAAAAAATCAGGAACTGCAAAAGGTTTCAAAAAT
647 T-GTGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAAT
* * *
15051746 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACAATTGC
710 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
**
15051811 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
775 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
15051876 TACCACCGTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCC
840 TACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
** * * * *
15051940 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGA
1 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
** * * * * * * * * * * *
15052005 C-CAAATCGAGGGTTGCGGCAGTAGGATCGGTAGCATGCAGAAGGGG-ACCCGACCAATTCCCAG
66 CTGGACTCGAGGGTTGCAGTAGCAGGATCAGCAGCACGTAG-AGGGGAACCCGACCGATCCCCGG
* *
15052068 CTTGCGCATCTCACCCCTCTGGTCGGTTGAGT-GCCCGCACGCTCATTTCGTGGGTTGACTTAGG
130 CTTACGCATCTCACCCCTCTGGTCGGTTGA-TCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*** * * *
15052132 CATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGATCAGACC
194 CATACATAGTTCATTCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACC
* * * * * **
15052197 GAGGGTTGTGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGC
259 GAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
**** * * * * * * *
15052262 ACCATCATTGGAGCATCGCCGGAGAACCTGACTGGTGGCATTAGGGTTCTGGCAATCGGGGGGGC
324 ACCATCGCCAGAGCATCACCGGAAAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
15052327 CGGGGGGGGTGTGCGCACATGACGTG-AGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
389 CGGGGGGGGTGT--GCACATGATGTGCA-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
15052391 ATCCCTCATCAAACCTCGACAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTT
451 ATCCCTCATTAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15052456 GCCTGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
516 GCCAGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
15052521 CTTCGAGTTTTTAGCTGAAATTTTTTATGCATGCCAAAAAAAATACAAGGATGACGTCTTCCAAG
581 CTTCGAGTTTTTAGCTGAAA-TTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAG
** *
15052586 TTTGTGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAA-TCGTAAAAAGTTTTGAGAA
645 TTTGTGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACT-GTAAAAAGTTTCAAAAA
*
15052650 TCGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
709 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
15052715 TATGAATTTACAAGCCACAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
774 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * ** *
15052780 CTACCACCTTATCAATCCACAGCTTGCGCATCTCTTCTCTCTGATCGACGTAGTGCCCGCCCGCC
839 CTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* *
15052845 CGCCCGTCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
1 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
15052910 CTAGAC-CGAGGGTTACAGTAGCAGGATCAGTAGCACGTAGAGGGAAACCCGATCGATCCCCG
66 CTGGACTCGAGGGTTGCAGTAGCAGGATCAGCAGCACGTAGAGGGGAACCCGACCGATCCCCG
15052972 TCGGGGGGGT
Statistics
Matches: 1725, Mismatches: 187, Indels: 45
0.88 0.10 0.02
Matches are distributed among these distances:
902 9 0.01
903 672 0.39
904 489 0.28
905 392 0.23
906 163 0.09
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CTGGACTCGAGGGTTGCAGTAGCAGGATCAGCAGCACGTAGAGGGGAACCCGACCGATCCCCGGC
TTACGCATCTCACCCCTCTGGTCGGTTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACATAGTTCATTCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA
GGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAC
CATCGCCAGAGCATCACCGGAAAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
GGGGGGGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATTAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAAATTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGTG
GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
Found at i:15052167 original size:26 final size:26
Alignment explanation
Indices: 15052131--15052183 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15052121 GTTGACTTAG
*
15052131 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
15052157 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
15052183 G
1 G
15052184 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:15053148 original size:19 final size:19
Alignment explanation
Indices: 15053124--15053173 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
15053114 AAAGTGTCTG
* *
15053124 AAATGGGGACACTTTTTTC
1 AAATGGGCACAATTTTTTC
*
15053143 AAATGGTCACAATTTTTTC
1 AAATGGGCACAATTTTTTC
*
15053162 AAATGGTCACAA
1 AAATGGGCACAA
15053174 AATCTTGTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (19 bp):
AAATGGGCACAATTTTTTC
Found at i:15057403 original size:836 final size:829
Alignment explanation
Indices: 15055308--15057673 Score: 2875
Period size: 836 Copynumber: 2.8 Consensus size: 829
15055298 GTTGGCTTAG
* * *
15055308 GCATACGGAGTTCATTCCCAGTCTAAGATCT-GATTGGACCGAGGGTTGTGGCAGCACATGCTAG
1 GCATGCGGAGTTCATTCCCAGTCTAAGAT-TGGATT-GACTGAGGGTTG-CGCAGCACATGCTAG
* * * *
15055372 GCTCGGGCATGTGCTGGTGCCCCAATTTCCTTCGTCGGGGCACCATCGTCGGAGCATCTTCAGAG
63 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCA---TC---G
* *
15055437 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCTAGGGGGTGTGCG
122 ---C--CGGAGAACCTGACCGACCGCATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCG
*
15055502 CACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCT
182 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
15055567 TGAGAACTCACACCCTCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
247 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
15055632 GTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGATTTTTTAGCT
312 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCT
* *
15055697 GATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTC
377 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
15055762 CTTCCAAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
442 CTTCCAAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
15055827 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
507 CGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
15055892 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
572 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
15055957 CACAGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTACCCGCCCACCCGCTCGCCCGCTCATTT
637 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCACCCACCCACCCGCTCATTT
* * * * * * **
15056022 CATCGATTAGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGTG
702 CATCGATTAGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGCATCGCACTCAGGCCTGTG
* * * **
15056087 GCAGCAAGATTGGTAGCACGCAAAGGGGGACCTAACTGATCCTCGACTTGCACATCCCGCCCC
767 GCAGCAAGATCGCTAGCACGCAAAGGGGGACCTAACTGATACTCGACTTGCACATCCCGCCAA
* * * ** ** * * ** * *
15056150 TC-TGGCCG-GTTGAACGCCCGCACTGTCGCT-TCA-TGGGTTGACTTAGGCATACGGAGTTCAT
1 GCAT-GCGGAGTT-CA-TTCC-CA--GT--CTAAGATTGGATTGACTGAGGGTTGCGCAG--CA-
* * * * *
15056211 TCCTAGTCTAAGCATCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCA
55 -CAT-G-CT-AG--GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCG
* * *
15056276 GAGCATCGTCGGAGAACCTGACCGA-CGACATTGGGGTTTCGACGATCAGAGGGG-TCGGGGGGT
114 GAGCATCGCCGGAGAACCTGACCGACCG-CATTGGGGTTTCGACGATCGGGGGGGCT-GGGGGGT
* *
15056339 GTGCGCACATGATGTGCGAAGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
177 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
15056404 AACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTGCCAGTAGCCA
242 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
15056469 TTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
307 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTT
* *
15056534 TAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAA
372 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * ** ** *
15056599 AACTCCTTCCCAAAAAATTTTAAAAAATCTTGAATCGTAAAACA-TTTTGAATGTCGTGCAAAAT
437 AACTCCTTCCAAAAAAATTTTAAAAAATCCTGAATCGTAAAA-AGTTTCAAAAATCGTGAAAAAT
* *
15056663 AGAGAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGAATGAATTTAC
501 AGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
15056728 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
566 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
15056793 TCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCCCCCCACCCACCCG
631 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCCACCCACCCACCCG
** * * * * ** *
15056858 CTCATTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTGCCAATCCTCGGCTTGCGCATCCCGCC
695 CTCATTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCCAAT-CTAAG-AT-CGCAT--CG-C
* * ** * *** * * * ** * *
15056923 CCTCTGGCCTGCTGAGC-GCCCGCA-CGCTCG-TTTC-ATGGGTTGACTTAGGT-ATAC-GGAGT
754 ACTCAGGCCTG-TG-GCAGCAAG-ATCGCTAGCACGCAAAGGG-GGACCTAACTGATACTCGACT
* *
15056982 T-CA-TTCCCAGTCTAA
815 TGCACATCCC-G-CCAA
**
15056997 GCATGCGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGCGACAGCACATGCTAGG
1 GCATGCGGAGTTCATTCCCAGTCTAAGATTGGATTG-ACTGAGGGTTGCG-CAGCACATGCTAGG
* * * * * *
15057062 CTCAGGCATGTGCTGGTGCTGTATTTTTCTTCCTCAGGGCACCATCGTCGGAGCATCGCCGAAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
15057127 ACCTGACCGACCGCATTGGGG-TTCTGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACCGCATTGGGGTTTC-GACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
* * **
15057191 CGATTGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
15057256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15057321 GGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGATTTTTTCA-CTAAATTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTT-AGCTGAATTTTTTT
* *
15057385 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * ** *
15057450 AATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATTATGAAAAATAGAAAACAAGTCGTCT
452 AATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15057515 TGCCATGAAACTTTACA-TGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGG
517 TGCCATGAAACTTCA-AGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *** *
15057579 CATTGGAAAATAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
15057644 CGCATCCC--CTCTCTGGCCGGCGTCGTGCCC
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
15057674 GCCCGCCTGC
Statistics
Matches: 1299, Mismatches: 179, Indels: 100
0.82 0.11 0.06
Matches are distributed among these distances:
834 20 0.02
835 4 0.00
836 521 0.40
837 5 0.00
838 2 0.00
839 2 0.00
840 1 0.00
841 10 0.01
842 518 0.40
843 59 0.05
844 17 0.01
845 17 0.01
846 16 0.01
847 12 0.01
848 17 0.01
849 13 0.01
850 12 0.01
851 5 0.00
853 48 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (829 bp):
GCATGCGGAGTTCATTCCCAGTCTAAGATTGGATTGACTGAGGGTTGCGCAGCACATGCTAGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
CTGACCGACCGCATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCACCCACCCACCCGCTCATTTCATCGATTAGCTTA
GGCATACGGAGTTCATTCCCAATCTAAGATCGCATCGCACTCAGGCCTGTGGCAGCAAGATCGCT
AGCACGCAAAGGGGGACCTAACTGATACTCGACTTGCACATCCCGCCAA
Found at i:15057893 original size:26 final size:26
Alignment explanation
Indices: 15057864--15057916 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15057854 GTTGACTTAG
15057864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15057890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15057916 G
1 G
15057917 AACGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15058467 original size:26 final size:26
Alignment explanation
Indices: 15058437--15058505 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
15058427 CGGCATACTC
*
15058437 AGTTCATTCCCAGTCTAAGTATACGA
1 AGTTCATTCCCAGTCTAAGCATACGA
**
15058463 AGTTCATTCCCAGTCTAAGCATACTT
1 AGTTCATTCCCAGTCTAAGCATACGA
*
15058489 AGTTCATTCCCAATCTA
1 AGTTCATTCCCAGTCTA
15058506 TGATCGGACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACGA
Found at i:15060096 original size:26 final size:26
Alignment explanation
Indices: 15060060--15060112 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15060050 GTTGACTTAG
*
15060060 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15060086 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15060112 G
1 G
15060113 ATTAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15060992 original size:26 final size:26
Alignment explanation
Indices: 15060956--15061008 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15060946 GTTGACTTGG
* *
15060956 GCATACGGAGTTCATTCCTATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15060982 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15061008 G
1 G
15061009 ATTGCATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15063404 original size:26 final size:26
Alignment explanation
Indices: 15063367--15063419 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15063357 GTTGACTTAG
15063367 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
*
15063393 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
15063419 G
1 G
15063420 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:15063631 original size:894 final size:892
Alignment explanation
Indices: 15061781--15064070 Score: 3150
Period size: 894 Copynumber: 2.6 Consensus size: 892
15061771 CCGGCTTGCG
* * *
15061781 CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTA
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
* * * *
15061846 AGAACTCACACCCTTTTAAAGAGCATCTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGT
66 AGAACTGACACCC-CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGT
* * *
15061911 GTTTGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGA
130 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
** * * *
15061976 ATTTTTTTAAGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCT
195 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
15062041 TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACG
260 TCTGAAAAAATTTTAAAAAATCTCGAACC--AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
15062106 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
323 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
15062171 AAAATGGCATTGGCATAG-AGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCC
388 AAAATGGCATTGGCA-CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
15062235 ACGGCTTGCACATCCCGTCTCTTTGGCCGTCGTAGTAACCGCCCACCCGCCCGCCCGGTCGTTTC
452 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G----CCCGCCCGCACGCTCGTTTC
*
15062300 GCCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTAAGGGCTGTGG
509 GCCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGCTGTGG
* * * *
15062365 CAGTAGGATCGACAGGATGCAGAAGGGGACCAGGTCGATCGCCGACTTGCGCATCCCGCCCCTCT
574 CAGTAGGATCGACAGCATGCAGAAGGGGACCAGGCCGATCCCCGACTTACGCATCCCGCCCCTCT
* *** * ** * *
15062430 TGCCGACTGAGCACCCGTATGCACATTCCATGGGTTGATTTAGGTGTACGGAGTTCATTCCCTGT
639 GGCCGACTGAGCACCAACATGCACATTCCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
* * *
15062495 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGC
704 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGC
* * * * * * *
15062560 TAGGCTTGGCCATGTGCTGGTGTCATATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGCCG
769 TAGGCTCGGCCATATGCAGGTGCCACATTTTTCTTCATCGAGGCACCATCACTGAAGCATCGCCG
* * * * * * *
15062625 GATAACCTGACCGGCGGCATTAGGTTTCCGATGATTGGGGGAGTCGGGGGGTGTGCGCA
834 AAGAACCTGACCGGCGACATTAGGTTTCCGACGATCGGGGGAGCCGGGGGGTGTGCACA
15062684 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
* * * *
15062749 AGAACTGACAACCCCTTAAAGAGCATTTGAGCTTTTACAGGTTTCCTGCAAGTAGCCATTAAAGT
66 AGAACTGAC-ACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGT
* *
15062814 GTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGA
130 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
15062879 ATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCT
195 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
15062944 TCTGAAAAAATTTTAAAAAATCTCGAACCACAAAAGATTCAAAAATCATGAAAAATAGAAAACGA
260 TCTGAAAAAATTTTAAAAAATCTCGAACCA-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
15063009 GTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
324 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
15063074 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
389 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
15063139 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTACGCTCGTTTCGTCC-GTTGG
454 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCACGCTCGTTTCG-CCGGTTGG
* * ** * *
15063203 CTTAGGCATACGGAGTTTATTCCC-GATCTAAGATTAGACCGAA-TCGGGGGTTGTGGTAGTAGG
518 CTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCGAACT-AAGGGCTGTGGCAGTAGG
* * *
15063266 ATC-ACTAGCATGCAG-TGAGGGACCTGGCCGATCCCCGACTTACGCATCCCGTCCCTCTGGCCG
581 ATCGAC-AGCATGCAGAAG-GGGACCAGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCG
** * * * * * *
15063329 GTTGAGCGCCAACATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCTAAG
644 ACTGAGCACCAACATGCACATTCCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
* * * *
15063394 CATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCACATGCTGGGC
709 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGC
* * *
15063459 TCGAG-CATATGCAGGTGCCGCATTTTTCTTCATCG-GGCACCATC-GTCGAAGCATCGTCGAAG
774 TCG-GCCATATGCAGGTGCCACATTTTTCTTCATCGAGGCACCATCACT-GAAGCATCGCCGAAG
* * *
15063521 AACCTGACTGGCGACATTGGGGTTT-CGACGATCGGGGGGGCCGGGGGGGTGTGCACA
837 AACCTGACCGGCGACATT-AGGTTTCCGACGATCGGGGGAGCC-GGGGGGTGTGCACA
* * * * *
15063578 CATGATGTGTGATTGGTGCTGGTATTTGACCCTTATATTAGCCCCCTATCCCTCATCAAACCTCA
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
**
15063643 AGAACTCG-CACCTCCTTTAAA-AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTGTTAAA
66 AGAACT-GACACC-CC-TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
** * * *
15063706 GTGACTGAAATGGGGACACGTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTGGCT
128 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
15063771 GAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTATCAAGTTTGGGGCCAAAA-TC
193 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
15063835 CTT-TCGAGAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCGAAAGTCGTAAAAAATAGAAA
258 CTTCT-GAAAAAATTTTAAAAAATCTCGAA-C-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
15063899 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCC
320 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
15063964 ATCAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGAT
385 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
**
15064029 CCACGGCTTGCGCATCCCGTCTCTCTCACCGGCGTAGTGCCC
450 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
15064071 TCCTGCCCGC
Statistics
Matches: 1239, Mismatches: 130, Indels: 45
0.88 0.09 0.03
Matches are distributed among these distances:
892 2 0.00
893 85 0.07
894 688 0.56
895 10 0.01
898 1 0.00
901 2 0.00
902 187 0.15
903 260 0.21
904 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (892 bp):
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
AGAACTGACACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTG
TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CTGAAAAAATTTTAAAAAATCTCGAACCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCACGCTCGTTTCGCCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGCTGTGGCAGTAGGATCGA
CAGCATGCAGAAGGGGACCAGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGC
ACCAACATGCACATTCCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGCCA
TATGCAGGTGCCACATTTTTCTTCATCGAGGCACCATCACTGAAGCATCGCCGAAGAACCTGACC
GGCGACATTAGGTTTCCGACGATCGGGGGAGCCGGGGGGTGTGCACA
Found at i:15063872 original size:17 final size:19
Alignment explanation
Indices: 15063850--15063893 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
15063840 GAGAAAATTT
15063850 TAAAAAATCTCG-AA-TCG
1 TAAAAAATCTCGAAAGTCG
* *
15063867 TAAAAAGTTTCGAAAGTCG
1 TAAAAAATCTCGAAAGTCG
15063886 TAAAAAAT
1 TAAAAAAT
15063894 AGAAAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 10 0.45
18 2 0.09
19 10 0.45
ACGTcount: A:0.50, C:0.11, G:0.14, T:0.25
Consensus pattern (19 bp):
TAAAAAATCTCGAAAGTCG
Found at i:15065098 original size:685 final size:684
Alignment explanation
Indices: 15063562--15066142 Score: 3512
Period size: 685 Copynumber: 3.7 Consensus size: 684
15063552 TCGGGGGGGC
* * * * * *
15063562 CGGGGGGGTGTGCACACATGATGTGTGATTGGTGCTGGTATTTGACCCTTATATTAGCCCCCTAT
1 CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTCACCCTTATATTGGCCCCCTAT
* * *
15063627 CCCTCATCAAACCTCAAGAACTCGCACCTCCTTTAAA-AGCATTTGAGATTTTACAAGTTTGCTG
66 CCCTCATCAAACCTCAAGAACTCACACC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
** *
15063691 CCAGTAGCTGTTAAAGTGACTGAAATGGGGACACGTTTTTCAAATGGTCACCAAATCTTGTACAC
130 CCAGTAGCCATTAAAGTGACTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
15063756 TTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTATCAAGT
195 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
* * * * *
15063821 TTGGGGCC-AAAATCCTTTCGAGAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCGAAAGTC
260 TTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
15063885 GTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTA
325 GTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTA
*
15063950 TGAATTTACAAGCCATCAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
390 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
15064015 ATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCACCGGCGTAGTGCCCTCCTGCCCG
455 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTC-GCAGCGTAGTGCCCTCCT----G
* * *
15064080 CCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCTCAGTCTAAGCATC
515 CCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATC
* *
15064145 AAATCGGACCGAGGGTTACGATAGCACATGCTGGGCTTGGGGCATGTGCAGGTGCCTCATTTTTC
580 AAATCGGACCGAGGGTTACGGTAGCACATGCTGGGC-TCGGGCATGTGCAGGTGCCTCATTTTTC
*
15064210 TTCATCGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGA
644 TTCATCGGGCACCATCGTCGGAGCATCGCCGAAGAACTTGA
* *
15064251 CGGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTAGTACTTCACCCTTATATTGGCCCCCTAT
1 CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTCACCCTTATATTGGCCCCCTAT
15064316 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
66 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
**
15064381 CAGTAGCTGTTAAAGTGACTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACT
131 CAGTAGCCATTAAAGTGACTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACT
*
15064446 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
196 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * * * *
15064511 TGGGGCCAAAAATCCTTTCGAGAAAATTTTAAAAAATCTCGAACCGTAAAACGTTTCGAAAGTCG
261 TGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
15064576 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
326 TAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTAT
* *
15064641 GAATTTACAAGTCATAAAAATGGCATTGCCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
391 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
15064706 TCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTCGTAGCGTAGTGCCCTCCTTCCCGCC
456 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCAGCGTAGTGCCCTCCTGCCCGCC
* * *
15064771 CGCCCACTCATTTCGTTGGTTAGCTTAGGCATACAGTGTTCATTCCCAGTCTAAGCATCAAA-CT
521 CGCCCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATCAAATC-
* * *
15064835 GGACCGGGGGTTACGGTAGCACATGCTGGGCCCGGGCATGTGCAGGTGCCTCATTTTTCTTTATC
585 GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCAGGTGCCTCATTTTTCTTCATC
15064900 GGGCACCATCGTCGGAGCATCGCCGAAGAACTTGA
650 GGGCACCATCGTCGGAGCATCGCCGAAGAACTTGA
* ** *
15064935 CGGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATCGGCCCCCTA
1 CGGGGG-GGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTCACCCTTATATTGGCCCCCTA
** *
15065000 TCCCTCATCAAACCTTGAGAACGCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
65 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
15065065 CCAGTAGCCATTAAAGTGTA-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
130 CCAGTAGCCATTAAAGTG-ACTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15065129 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTTCCAGG
194 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
* * * * * * * *
15065194 TTTGGGGCCAAAACTCCATCCAAAAAAAATTTGAAAAATCCCGAACCGCAAAAAGTGTCAAAAAT
259 TTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
15065259 CGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACGTGAAGGATTAAGGGACCATTAT
324 CGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGT
** *
15065324 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTGCC-AAACCCACC
389 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * *
15065388 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTTTGGCCGACATAGTG--C-CC-GCCG
454 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCAG-CGTAGTGCCCTCCTGCCC
* * * * * * * * * *
15065449 GCCTGTCCGCTCATTTCGTCAGTTGGCTTAGGTATACGGAGTTCGTTCGCACTCTAAG-ATCAGA
518 GCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATCAAA
* * * * * * *
15065513 TCAGACCGAGGGTTGCAGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
583 TCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCAGGTGCCTCATTTTTCTTCA
* *
15065578 TCGGTGCACCATCGTCGGAGCGTCGCCAGAGAACCTAACAGGCGGCATTGGGGTTCCGGCGA
648 TCGG-GCACCATCGTCGGAGCATCGCC---GAA---GA-A-----C-------TT-----GA
* * * *
15065640 TCGGGGGGCCTGGGGGTGTGCACACATGATGTGCAATTGGTGCTGGTAGTTCACCCTTATATTGG
1 -C----GG---GGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTCACCCTTATATTGG
* * *
15065705 CCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGG
58 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
15065770 TTTGCTTCCAGTAGCCAATAAAGTGTCTGAAATGGGGACAC-TTTCTTCAAATGGTCTCAAAATC
123 TTTGCTGCCAGTAGCCATTAAAGTGACTGAAATGGGGACACGTTT-TTCAAATGGTCACAAAATC
* * *
15065834 TTGTACACTTTGAGTTTTTAGCTGAATTCTTTTGTGCATGCCATCAAAAATACAAGGATCACATC
187 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
* * * *
15065899 TACCATGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTCAAAAATCCCAAACCGTAAAAAGTT
252 TACCAAGTTTGGGGCCAAAAATCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* *
15065963 TCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
316 TCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGG
** *
15066028 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTA
381 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
*
15066093 AACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTC
446 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTC
15066143 ATTGGTTGGG
Statistics
Matches: 1698, Mismatches: 150, Indels: 64
0.89 0.08 0.03
Matches are distributed among these distances:
680 62 0.04
681 70 0.04
682 2 0.00
683 1 0.00
684 123 0.07
685 497 0.29
686 1 0.00
687 1 0.00
688 8 0.00
689 259 0.15
690 219 0.13
693 1 0.00
700 2 0.00
705 2 0.00
706 1 0.00
710 2 0.00
711 5 0.00
712 392 0.23
713 50 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (684 bp):
CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTCACCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGACTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
TGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
TAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCAGCGTAGTGCCCTCCTGCCCGCC
CGCCCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATCAAATCG
GACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCAGGTGCCTCATTTTTCTTCATCG
GGCACCATCGTCGGAGCATCGCCGAAGAACTTGA
Found at i:15067643 original size:877 final size:867
Alignment explanation
Indices: 15066342--15068113 Score: 2576
Period size: 877 Copynumber: 2.0 Consensus size: 867
15066332 CCCAACATAA
* * * *
15066342 GCATAAGGAGTTCATTCCCAGTCTAAGAGCGGACCAGACCGAGGGTTGCGGTAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCGGACCAGACCGAGAGTTGCAGCAGCACATGCCGGG
* ** **
15066407 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGGCGGAGCATCGTCGAGAA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCACCGAGAA
* * * *
15066472 CCTGGCCAGCGGCATTGAGGTTCCGGCGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGC
131 CCTGACCAGCGACATTGAGGTTCCGACGATCGGGGGGCCGGGGGGGGAGTGCGCACATGATGTGC
*
15066537 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
15066602 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAGTG
261 CCCCCTTAAAGAGCATTTCAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGCATCTAAAATG
* *
15066667 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTCTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTGT
** * *
15066732 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTACCGAAAAAA
* *
15066797 TTTTAAAAATTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
15066862 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* ** * ***
15066927 TGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
586 TGGAACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCAC
* *
15066992 ATCCCGTCTCTCTGGCCTG-CGTAGTGCCCGCCCGCCCGCCAGCCCGCTCGCTCGTTTCGCCAGT
651 ATCCCGTCTCTCTGACC-GACGTAGT----GCCCG--C-CCA---C-C-CGCTCGTTTCACCAGT
* *
15067056 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GAACCAGACCGAGGGTTGCAGCAGCA
703 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTAGAACCA-ACCAAGGGATGCAGCAGCA
* * *
15067120 GGATTGGTAGCATGCAGAGGGGGACCCGATCGATC-CTCGGCTTGCGCATCCCGCCCCTCTGGCT
766 GGATCGGTAGCATGCAGAGGGGGACCCGACCGATCTC-CGGCTTGCGCATCCCGCCCCTCTGGCC
*
15067184 GACTGAGCGCCCGCACCCTCATTTCGTG-G-GACTTAG
830 GACTGAGAGCCCGCACCCTCATTTCGTGAGTGACTTAG
* *
15067220 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCGGACCAGACCGAGAGTTGCAGCAGCACATGCCGGG
*
15067285 CTC-AGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCACCGGAG
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCACC-GAG
*
15067349 AACCTGACC-GACGACATTGGGGTTCCGACGATC-GGGGGCC-GGGGGGGAGTGCGCACATGATG
129 AACCTGACCAG-CGACATTGAGGTTCCGACGATCGGGGGGCCGGGGGGGGAGTGCGCACATGATG
* * * *
15067411 TGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15067476 ACACCCCCTTGAAGAGCATTTCAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTAAA
258 ACACCCCCTTAAAGAGCATTTCAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGCATCTAAA
* *
15067541 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTC
*
15067606 TGTGCATGCCGAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTACCGAA
388 TGTGCATGCC-AACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTACCGAA
* * * *
15067670 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
15067735 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
15067800 GCATTGGAACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTT
582 GCATTGGAACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
15067865 CCACATCCCGTCTCTCTGACCGATGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGG
647 CCACATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCACCCGCTCGTTTCACCAGTTGGCTTAGG
* * * ** *
15067930 CATACGGAGTTGATTCCAGTCTAAGATTAGATCGAACCAAGGGATGTGGCAGTAGGATCGGTAGC
712 CATACGGAGTTCATTCCAGTCTAAGATTAGAACCAACCAAGGGATGCAGCAGCAGGATCGGTAGC
* * **
15067995 ATGCAGAGGGGGACCCGACCGATCTCCGGCTTGCGCATCCTGCCCCTTTGGCCGGTTGAGAGCCC
777 ATGCAGAGGGGGACCCGACCGATCTCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGAGCCC
** *
15068060 GCACGGTCGTTTCGTGAGTTGACTTAG
842 GCACCCTCATTTCGTGAG-TGACTTAG
15068087 GCATACGGAGTTCATT-CCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
15068114 ATACGGAGTT
Statistics
Matches: 806, Mismatches: 78, Indels: 32
0.88 0.09 0.03
Matches are distributed among these distances:
864 106 0.13
865 42 0.05
866 12 0.01
867 24 0.03
870 3 0.00
871 1 0.00
873 5 0.01
876 1 0.00
877 461 0.57
878 121 0.15
879 30 0.04
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (867 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAGCGGACCAGACCGAGAGTTGCAGCAGCACATGCCGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCACCGAGAA
CCTGACCAGCGACATTGAGGTTCCGACGATCGGGGGGCCGGGGGGGGAGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTCAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGCATCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTGT
GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTACCGAAAAAA
TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGAACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCAC
ATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCACCCGCTCGTTTCACCAGTTGGCTTAGGCATA
CGGAGTTCATTCCAGTCTAAGATTAGAACCAACCAAGGGATGCAGCAGCAGGATCGGTAGCATGC
AGAGGGGGACCCGACCGATCTCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGAGCCCGCAC
CCTCATTTCGTGAGTGACTTAG
Found at i:15068123 original size:25 final size:26
Alignment explanation
Indices: 15068089--15068139 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
15068079 TGACTTAGGC
15068089 ATACGGAGTTCATT-CCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15068114 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15068140 TCAGACCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:15068516 original size:26 final size:26
Alignment explanation
Indices: 15068480--15068532 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15068470 GTTGACTTAG
*
15068480 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15068506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15068532 G
1 G
15068533 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15068573 original size:393 final size:388
Alignment explanation
Indices: 15067814--15068580 Score: 1097
Period size: 393 Copynumber: 2.0 Consensus size: 388
15067804 TGGAACACAG
* * * *
15067814 AAATACGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTCCACATCCCGTCTC
1 AAATACGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTCCACATCCCATCTC
* * * *
15067879 TCTGACCGATGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTGAT
66 TCTGACCGACGTAGTGCCCACCCACCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* *
15067944 TCCAGTCTAAGATTAGATCGAACCAAGGGATGTGGCAGTAGGATCGGTAGCATGCAGAGGGGGAC
131 TCCAGTCTAAGATTAGATCGAACCAAGGGATGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGAC
* * * * * * *
15068009 CCGACCGATCTCCGGCTTGCGCATCCTGCCCCTTTGGCCGGTTGAGAGCCCGCACGGTCGTTTCG
196 CCAACCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGAGCCCGCACGCTCGTTTCG
15068074 TGAGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAG
261 TGAGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAG
* *
15068139 ATCAGACCAGACAGAGGGTTGCGGCAGCACATGCTTGGGCTCGGGCATGGCATTGGCATGTAA
326 ATCAGACCAGACAGAGGGTTACGGCAGCACATGCTTGGGCTCGAGCATGGCATTGGCATGTAA
* * *
15068202 AAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTC
1 AAATACGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTCCACATCCCATCTC
* * *
15068267 TCTGGCCGGCGTAGTGCCCACCCGCCCGCCCG-TTCATTTTGTCGGTTGGCTTAGGCATACGGAG
66 TCTGACCGACGTAGTGCCCACCCACCCGCCCGTTTCA-----TCGGTTGGCTTAGGCATACGGAG
* * * * *
15068331 TTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGTAGGATTGGTAGCACGCAGAG
126 TTCATT-CCAGTCTAAGATTAGATCGAACCAAGGGATGCGGCAGTAGGATCGGTAGCACGCAGAG
* * * *
15068396 GGGGACCCAATCGATCCCCAGCTTGCGCATTCTACCCCTCTGGCCGGCTGAGCGCCTGCACGCTC
190 GGGGACCCAACCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGAGCCCGCACGCTC
* * *
15068461 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCA
255 GTTTCGTGAGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGAATACGGAGTTCATTCCCA
* * *
15068526 GTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGC-TGGGCTCGAGCATG
319 GTCTAAGATCAGACCAGACAGAGGGTTACGGCAGCACATGCTTGGGCTCGAGCATG
15068581 TGCTGGTGAT
Statistics
Matches: 332, Mismatches: 40, Indels: 9
0.87 0.10 0.02
Matches are distributed among these distances:
387 4 0.01
388 84 0.25
392 28 0.08
393 152 0.46
394 64 0.19
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (388 bp):
AAATACGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTCCACATCCCATCTC
TCTGACCGACGTAGTGCCCACCCACCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
TCCAGTCTAAGATTAGATCGAACCAAGGGATGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGAC
CCAACCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGAGCCCGCACGCTCGTTTCG
TGAGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCAGACAGAGGGTTACGGCAGCACATGCTTGGGCTCGAGCATGGCATTGGCATGTAA
Found at i:15069418 original size:26 final size:26
Alignment explanation
Indices: 15069382--15069434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15069372 GTTGACTTAG
*
15069382 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15069408 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15069434 G
1 G
15069435 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15070088 original size:902 final size:891
Alignment explanation
Indices: 15068189--15070160 Score: 2781
Period size: 902 Copynumber: 2.2 Consensus size: 891
15068179 TCGGGCATGG
* *
15068189 CATTGGCATGTAAAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
1 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
15068254 CGCATCCCATCTCTCTGGCCGGCGTAGTGC-CC-ACCCGCCCGCCCGTTCATTTTGTCGGTTGGC
66 CGCATCCCATCTCTCTGGCC-GCGTAGTGCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
** * *
15068317 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGTAGGATT
130 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAAACCGAGGGTTGCAGCAGTAGGATC
*
15068382 GGTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATTCTACCCCTCTGGCCGGCTGA
195 GGTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGA
*
15068447 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATAC
260 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATAC
* *
15068512 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGAG
325 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAG
* *
15068577 CATGTGCTGGTGATGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTAA
390 CATGTGCTGGCGATGCATTATTCTTCACCGGGGCACCAT--CC-G-G----ATCGGAGAACCTAA
* * ** **
15068642 CTGGCGGCATTGGGGTTCCAGTGACCGGGGGTTCCGGGGGGGTGTGCACACATGATGTGCGATGG
447 CCGGCGGCATTGGGGTTCCAGCGACCGGGGGAGCCGGGGGGGTGTGCACACATGATGCACGATGG
15068707 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
512 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
15068772 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATCGAGACA
577 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATCGAGACA
* * *
15068837 CTTTCTTCAAATGATCACAAAACCTTGTACACTTTGAGTTTGTAGCTGAATTTTTTTATACATGC
642 CTTTCTTCAAATGATCACAAAACCTTGTACACTTCGAATTTGTAGCTGAATTTTTTGATACATGC
* * * * *
15068902 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAACTTCTTCCAAAAAAATTTTAAA
707 CAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTACCAAAAAAATTTTAAA
* *
15068967 AAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
772 AAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTACCATGAA
* * * *
15069032 ACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
837 ACTGCACGGGAAGGCTTAAGGAACCACTGTATGAATTTACAAGCCATAAAAATGA
* *
15069087 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTTG
1 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * * **
15069152 TGTATCCCATCTCTCAGGCCGGTGTAGTGCCTGCCCGCCCATCCGCCCGCTCATTTCGTCGGTTG
66 CGCATCCCATCTCTCTGGCC-GCGTAGTG-C-GCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTG
* *
15069217 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGGTCAAACCGAGGGTTGCAGCAGTAGGA
128 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAAACCGAGGGTTGCAGCAGTAGGA
*
15069282 TCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCT
193 TCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCT
15069347 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCAT
258 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCAT
* * *
15069412 ACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-
323 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* *** * *
15069476 AGGCATGTGCTGGCGTTGCATTATTCTTTGTCGGGGCACCAT-C-G-TCGGAGAACCTGACCGGT
388 A-GCATGTGCTGGCGATGCATTATTCTTCACCGGGGCACCATCCGGATCGGAGAACCTAACCGGC
* * * * *
15069538 GGCATTGGGGTTTCGGCGATCGGGGGAGCCGGGCGGGGTGTGCAGACATGATGCACGATGGTTGC
452 GGCATTGGGGTTCCAGCGACCGGGGGAGCCGGG-GGGGTGTGCACACATGATGCACGATGGGTGC
* * *
15069603 TGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACGTTGAGAACTCACACCCCCTTAA
516 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
** * * * * *
15069668 AGAGTGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTT
581 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATCGAGACACTT
* * * * * *
15069733 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTGGTGCATGCCAA
645 TCTTCAAATGATCACAAAACCTTGTACACTTCGAATTTGTAGCTGAATTTTTTGATACATGCCAA
* ** *
15069798 TAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAGTTTTAAAAA
710 CAAAAATAAAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTACCAAAAAAATTTTAAAAA
* * *
15069863 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTACCATGAAAC
774 ATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTACCATGAAAC
* *
15069928 TGCACGGGAAGGCTTAATGAACCATTGTATGAATTTACAAGCCATAAAAATGA
839 TGCACGGGAAGGCTTAAGGAACCACTGTATGAATTTACAAGCCATAAAAATGA
* * ** * *
15069981 CATTGGCACGTAGAAGTATGAAGATGTGATTAAACCAACCTACCACCCTATCGATCCACGGCTTG
1 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
** * * * * **
15070046 CGCAAACCATCTCTCTGGCCGACGTAGTTC-CC-GCCCGCCTGCCCGTTCGTTTAATCGGTTGGC
66 CGCATCCCATCTCTCTGGCCG-CGTAGTGCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
* * ** * *
15070109 TTAGGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTG
130 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAAACCGAGGGTTG
15070161 TGGCAGCACA
Statistics
Matches: 950, Mismatches: 115, Indels: 26
0.87 0.11 0.02
Matches are distributed among these distances:
890 68 0.07
891 44 0.05
892 134 0.14
893 98 0.10
894 211 0.22
896 1 0.00
898 86 0.09
899 2 0.00
901 3 0.00
902 303 0.32
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
CGCATCCCATCTCTCTGGCCGCGTAGTGCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAAACCGAGGGTTGCAGCAGTAGGATCG
GTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGC
ATGTGCTGGCGATGCATTATTCTTCACCGGGGCACCATCCGGATCGGAGAACCTAACCGGCGGCA
TTGGGGTTCCAGCGACCGGGGGAGCCGGGGGGGTGTGCACACATGATGCACGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATCGAGACACTTTCTTCA
AATGATCACAAAACCTTGTACACTTCGAATTTGTAGCTGAATTTTTTGATACATGCCAACAAAAA
TAAAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTACCAAAAAAATTTTAAAAAATCCCGA
ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTACCATGAAACTGCACGG
GAAGGCTTAAGGAACCACTGTATGAATTTACAAGCCATAAAAATGA
Found at i:15072260 original size:718 final size:718
Alignment explanation
Indices: 15069408--15072260 Score: 3925
Period size: 718 Copynumber: 4.0 Consensus size: 718
15069398 CCCAGTTTAA
* *
15069408 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGTGGCAGCACATGCTGGG
* * ** * * * *
15069473 CTCAGGCATGTGCTGGCGTTGCATTATTCTTTGTCGGGGCACCA---TC---G--T---CGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
15069527 ACCTGACCGGTGGCATTGGGGTTTCGGCGATCGG-GGGAGCCGGGCGGGGTGTGCAGACATGATG
130 ACCTGACCGGCGGCATTGGGGTTTCTGCGATCGGAGGG-GCCAGG-GGGGTGTGCACACATGATG
** * * * **
15069591 CACGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACGTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
** * *
15069656 ACACCCCCTTAAAGAGTGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15069721 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTT-TT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTT
* * * * *
15069785 TGGTGCATGCCAATAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAA
388 T-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
15069850 AAAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * *
15069915 CTTACCATGAAACTGCACGGGAAGGCTTAATGAACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * ** *
15069980 ACATTGGCACGTAGAAGTATGAAGATGTGATTAAACCAACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
15070045 GCGCAAACC-ATCTCTCTGGCCGACGTAGTTCCCG----CCCGCCTGCCCGTTCGTTTAATCGGT
647 GCG-TATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGT
15070105 TGGCTTAG
711 TGGCTTAG
* *
15070113 GCATACGAACTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGTGGCAGCACATGCTGGG
* *
15070178 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GAGGCACCATCGCCGGAGCATCGCCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAG-GGCACCATCGTCGGAGCATCGCCGGAG
* * * * * *
15070242 AACCTGACTGGCGGCATTGGGGTTTC-GACGCT-AG-GGGGCCAGAGGGGTTTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTTCTG-CGATCGGAGGGGCCAGGGGGGTGTGCACACATGATG
* *
15070304 TGCGATGGGTGCTGGTACTTGGCCATTATATTAG-CCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
15070368 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGACATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15070433 ATGGGGACACTTTTTTCAAATGGTAATAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTCTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTC-T
* * *
15070497 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCACAAA-TCCTTCCAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGA
15070561 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
15070626 TCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCTATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
15070691 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** * *
15070756 TGCGTATCCCGTCTCTCTAGCCGACGTAGTGCCCGTCTGCCCGCCCGCCCGCTAGTTTCGTCGGT
646 TGCGTATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGT
*
15070821 TGGTTTAG
711 TGGCTTAG
* ** *
15070829 GCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
15070894 TTCGGGCATGTGCTGGTGCCGCATTCTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * *
15070959 AGCTGATTGGCGGCATTGGGGTTTCAGCGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTTCTGCGATCGGAGGGGCCAGGGGGGTGTGCACACATGATGTG
*
15071023 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
15071088 ACCCCCTTTAAGAGAATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
15071153 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTCTTTAGCGGAGTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTG
* *
15071218 TGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15071283 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15071348 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15071413 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * *
15071478 CGTCCTGTCTCTCT-GACTAGCGTAGTGCCCG-CCAGCCTGCCCGCCCGCTCATTTCGTCGGTTG
650 TATCCTGTCTCTCTGGCCGA-CGTAGTGCCCGCCCA-CCCGCCCGCCCGCTCGTTTCATCGGTTG
15071541 GCTTAG
713 GCTTAG
* * * * *
15071547 GCGTACGGAGTTCATTTCCAGTCTAAGATCGGATCGATCCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-CCGAGGGTTGTGGCAGCACATGCTGGG
** * * * *
15071612 CTCGGTTATGTGCTGGTGCCGTATTTTTCTTCCCCAGGGTACCATCGTCGGAGCATCGCTGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
15071677 ACTTGACCGGCGACATTAGGG-TTCTTGCGATCGGAGGGGCC-GGGGGGTGTGCACACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTTC-TGCGATCGGAGGGGCCAGGGGGGTGTGCACACATGATGT
*
15071740 GCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
15071805 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGCAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15071870 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGTTGAATTTCTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTT
* * *
15071935 GTGCAT-CTTAACAAAAATACAAGGATCATGTCTACCAAGGTTGGGGCCAAAACTCCTTCCGAAA
389 GTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
15071999 AAATTTTAAAAAATCTCGAACCGCAAAAAGGTTT-GAAAATCGTGAAAAATAGAAAACGAGTCAT
453 AAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
15072063 CTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15072128 GCATTGGCACGCAGAAATATGATGATGTGCCTAAACCCACCTACCATCCTATCGATCGATGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** *
15072193 GCTTATCCTGTCTCTCTGGCCGGCATAGTGCTCGCCCACCCGCCCGCCTACTCGTTTCATTGGTT
647 GCGTATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTT
15072258 GGC
712 GGC
15072261 CTACATTCCT
Statistics
Matches: 1911, Mismatches: 199, Indels: 63
0.88 0.09 0.03
Matches are distributed among these distances:
704 2 0.00
705 95 0.05
708 1 0.00
711 8 0.00
712 394 0.21
713 52 0.03
714 4 0.00
715 5 0.00
716 200 0.10
717 68 0.04
718 1070 0.56
719 12 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTTCTGCGATCGGAGGGGCCAGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGT
ATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
TAG
Found at i:15072442 original size:26 final size:26
Alignment explanation
Indices: 15072412--15072463 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15072402 TTGACTTAGC
15072412 CATATGGAGTTCATTCCCAGTCTAAG
1 CATATGGAGTTCATTCCCAGTCTAAG
15072438 CATATGGAGTTCATTCCCAGTCTAAG
1 CATATGGAGTTCATTCCCAGTCTAAG
15072464 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGTCTAAG
Found at i:15074991 original size:720 final size:716
Alignment explanation
Indices: 15073613--15076519 Score: 3651
Period size: 720 Copynumber: 4.1 Consensus size: 716
15073603 GTGCCCGCAT
* * * * *
15073613 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACTGA
* * * *
15073678 GGGTTGCGGCAGCACACGCTGGGCTCGAGCATGTGCTGGTGATC-CATTTTTCTTCATCGGGGCA
65 GGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGCT-ACCGCATTTTTCTTCGTCGGGGCA
* * * * * **
15073742 CCATCGCCGGAGCATCATCGGAGAACCTAACCGATGGCATTGGGGTTCCGGTGATCGGGGGTTCC
128 CCATCGTCGGAGCATCGTCGGAGAACCTTACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCC
*
15073807 AGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
193 A-GGGGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
15073872 CCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
257 CCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
15073937 CAGTAGCCATTAAAGTGTCTAAAATGAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACT
322 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
15074002 TCAAGTTTTAAACTGAATTTTTTTGTACATGCCAACAAAAAA-ACAAGGATCATGTCTACAAAGT
387 TCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCATGTCTACCAAGT
* * * * * * * * *
15074066 TTGGGGCCAAAACTCCGTCCGAAAGAATTTTTAAAAGTCCCGAACAGTAAAAATTTTTGAAAATT
451 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACACTAAAAAGTTTCGAAAATC
* * *
15074131 GTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
516 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
15074196 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCT
581 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
15074261 ACCACCCTATCGATCCACGGCTTGCGCATTCCGTCACTCTGGCAGGCGTAGTGCCCGCCCGCCCG
646 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
15074326 CCTGCCC
711 CC-GCCC
* *
15074333 GCTCGTTTCATCGGTGGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACTGA
* ** * *
15074398 GAGTTATGGTAGCACATGCTAGGCTCGGTCATGTGCTGCTACCGCATTTTTCTTCGTCGGGGCAC
65 GGGTTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGCTACCGCATTTTTCTTCGTCGGGGCAC
* * * *
15074463 CATCGTCGGAGCATCGTCAGAGAAACTTACCGACGACATTAGGGTTCCGGTGATTGGGGGGGCCG
129 CATCGTCGGAGCATCGTCGGAGAACCTTACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCC-
*
15074528 AGGGGCGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
193 AGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
15074593 CCTCAACAAACCTCAAAAACTCACCCCCCCTTAAAGAGCATTTGAGTTTTTACAGGTTTGCTGCC
258 CCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* **
15074658 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCGCATGGTCACAAAATCTTGTACACTT
323 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
15074723 CGAGTTTTTAGCTGATTTTTTTTGTGCATTCCAAAAAAAATACAAGGACCATGTTTACCAAGTTT
388 CGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT
* * * *
15074788 GGGGCCAAAACTCATTCCGAAAAAATCTTAAAAAATC-CTGAACCCTAAAAAGTTTCCAAAATCA
453 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACACTAAAAAGTTTCGAAAATCA
* *
15074852 TGAAAAATAGAAAATGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
517 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** * * *
15074917 GAATTTACAAGCCATAAAAATGGCATTAACACGTAGAAATATGAAGATATGCCTAAACCTACCTA
582 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
15074982 CCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCG--C-C
647 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
15075044 CGCCC
712 CGCCC
* * * * * *
15075049 GCTCG-TTAAGTCGGTTGGCTTAGGCACACAGAGTTTATTCCCAATCTAAGATCAGATCAAACTG
1 GCTCGTTTCA-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAACTG
15075113 AGGGTTGCGGCAGCACA---T--GC-C-G---G-G--GC-A-C-CA----------T--------
64 AGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGCTACCGCATTTTTCTTCGTCGGGGCAC
* * * * *
15075144 CA-C--CGGAGCATCGCCGGAGAACCTGACCGACGTG--TTGGGGTTTCGGCGATCGAGGGGGCT
129 CATCGTCGGAGCATCGTCGGAGAACCTTACCGACG-GCATTAGGGTTCCGGTGATC-----GG--
* * * * * *
15075204 GGGGGGCTGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTTGTACCTGGCCCTTATATTGGCC
186 GGGGGCCAGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * * *
15075269 CCCTATCCCTCATCGAACCTCTAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
251 CCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
15075334 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCGATAT-GTCACAAAATCTT
316 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTT
* * * **
15075398 GTACACTTCGAGTTTTTAGCTGATTTTTTTTTTGCATGCCAACAAAAATGCAAGGATCACATCTA
380 GTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTA
* ** *
15075463 CCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCTCAAACTGTAAAAATTTTCG
445 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACACTAAAAAGTTTCG
* *
15075527 AAAATCATGAAAAATAAAAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGAC
510 AAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
15075592 CATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
574 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
*
15075657 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGC
639 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
*
15075722 CCG--C-CTGCCC
704 CCGCCCGCCGCCC
* * *
15075732 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACTGA
* * * ** *
15075797 GGGTTGGGGGAGCACATGCTGGGCTCGGGCATGTGCTGGTTTCGTATTTTTCTTCGTCGGGGCAC
65 GGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGCTACCGCATTTTTCTTCGTCGGGGCAC
* * * * ** *
15075862 CATCATCGGAGCATCGCCGGAGAACCTGACTGGGGGCATTAGGGTTCCGGAT-ATCGAGGGGGCC
129 CATCGTCGGAGCATCGTCGGAGAACCTTACCGACGGCATTAGGGTTCCGG-TGATCGGGGGGGCC
*
15075926 AGGTGGCGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
193 AGG-GGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
15075991 CCCTCATCAAACCTTGAAAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
257 CCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
15076056 CAATAGCCACTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACT
322 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
15076121 TTGAGTTTTTAGCTGA-TTTTTTTATGCATG-CAAAGAAAAATAAAAGGATCA-GTTCTACCAAG
387 TCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCATG-TCTACCAAG
* * * * *
15076183 -TTGGGGCCAAAACTCCTTTCAAAAAAAATTTAAAAAATCTCGAACTGC-AAAAAGTTTCAAAAA
450 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAC-ACTAAAAAGTTTCGAAAA
* * * *
15076246 TCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTA
514 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
15076311 TATGTATTTACAAGCCATACAAATGGCATTGGCACACATAAATATGAAGATGTGCCTAAACCCAC
579 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
15076376 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACC
644 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
15076441 CGTCCGCCC
709 CG-CCGCCC
* * * *
15076450 ACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCAGACTAA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACTGA
15076515 GGGTT
65 GGGTT
15076520 ATGGTAGCAG
Statistics
Matches: 1890, Mismatches: 226, Indels: 144
0.84 0.10 0.06
Matches are distributed among these distances:
677 13 0.01
678 25 0.01
680 1 0.00
681 2 0.00
682 48 0.03
683 488 0.26
684 10 0.01
686 1 0.00
688 2 0.00
689 2 0.00
691 1 0.00
694 1 0.00
695 1 0.00
697 1 0.00
699 3 0.00
700 2 0.00
701 1 0.00
702 2 0.00
704 1 0.00
705 1 0.00
709 1 0.00
710 2 0.00
711 2 0.00
713 1 0.00
714 189 0.10
715 94 0.05
716 253 0.13
717 4 0.00
718 71 0.04
719 11 0.01
720 616 0.33
721 27 0.01
722 13 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAACTGAG
GGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGCTACCGCATTTTTCTTCGTCGGGGCACCA
TCGTCGGAGCATCGTCGGAGAACCTTACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCAGG
GGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACACTAAAAAGTTTCGAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCC
C
Found at i:15077499 original size:891 final size:894
Alignment explanation
Indices: 15075758--15078319 Score: 3454
Period size: 891 Copynumber: 2.9 Consensus size: 894
15075748 GGCTTAGGCA
* * ** *
15075758 TACGGAGTTCATTCCCAGACTAAGATC-AGACCAGACCGAGGGTTGGGGGAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCAAGGGTTACGGCAGCACATGCTGGGCT
* * * *
15075822 CGGGCATGTGCTGGTTTCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAAC
65 CGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
* * * ** * *
15075887 CTGACTGGGGGCATTAGGGTTCCGGATATCGAGGGGGCCAGGTGGCGG-GTGCGCACATGATGTG
130 CTGAC-CGGAGCATTAGGGTTACGGCGATCGGGGGGGCCAGG-GGAGGTGTGCGCACATGATGTG
* *
15075951 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15076016 CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAC-TAAAGTGTCTGAAA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-CTTAAAGTGTCTGAAA
* *
15076080 TGGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15076144 ATGCATGCAAAGAAAAATAAAAGGATCA-GTTCTACCAAG-TTGGGGCCAAAACTCCTTTCAAAA
387 ATGCATGCCAACAAAAATAAAAGGATCATG-TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
15076207 AAAATTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTC
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
15076272 TTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTATATGTATTTACAAGCCATACAAATGG
516 TT--C-TG--AC-TCA-GTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
** *
15076337 CATTGGCACACATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
574 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15076402 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGTCCGCCCACTCGTTTCATCGGTTG
639 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CGC-CCCGCCCGCCCGCTCGTTTCATCGGTTG
* * * ** **
15076467 GCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCAGACTAAGGGTTATGGTAGCAGGA
701 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
* * * *
15076532 TCAGCAGCACACAGAGGGGTATCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCTGACT
766 TCAGCAGCACACAGAGGGGTACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGACT
* * *
15076597 GAGCCCCCGCACGCTCGTTTCATGGGTTGACTTTGGCATATGGAGTTCATTCCCAGTCTAAG-G
831 GAGCCCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCG
* * * *
15076660 ATGCGGAGTTCATTCCCAGTCTAAGATTGAATC-GAACCAAGGGTTACGGTAGCACATGCTGGGC
1 -TACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCAAGGGTTACGGCAGCACATGCTGGGC
** *
15076724 TCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCGTCACCGGAGAA
64 TCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
* * * *
15076789 CTTGACCGGTAGCATTAGGGTTACGGCGATCGGGGGGGTC-GGGG-GGTATGCGCACATGATATG
129 CCTGACCGG-AGCATTAGGGTTACGGCGATCGGGGGGGCCAGGGGAGGTGTGCGCACATGATGTG
* * *
15076852 CAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTAACCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
**
15076917 ACCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAAT
* * *
15076982 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* *
15077047 TGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGACAAAACCCCTTCCAAAAAA
388 TGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
15077112 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-T
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
15077176 -TG-C-CA-TGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
518 CTGACTCAGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
15077237 GCAGAAATATGAAGTTGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCG
583 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
15077302 TCTCTCTGGCCGACGTAGTGCCCGCCTGCCTGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCA
648 TCTCTCTGGCCGGCGTAGTGCCCGCC--CC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * *
15077367 TACGAAGTTCAGTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGCTCAGCAGCA
710 TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCA
** * * * **
15077432 TGCAGAATGGG-ACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCC
775 CACAG-AGGGGTACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCCCCC
* * *
15077496 GCACGCTTGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCG
839 GCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCG
* * * * *
15077552 TACGGAGTTCATTCCCAGTCTAATATCGGACCAGACCAAGGGTTGCGGCAGTACATACTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTC
** * * * * * *
15077617 ATGCATGTGCTGGGGCCGCATTTTTCATCGTAGCGGCACCATCGTCGGAGCATCACTGGAGAACC
66 GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * * * * *
15077682 TGACCGGCGACATTGGGGTTTCGGCGATCGGGGGTGCCGGGGGAGGTGTACGCACATGATGTGCG
131 TGACCGGAG-CATTAGGGTTACGGCGATCGGGGGGGCCAGGGGAGGTGTGCGCACATGATGTGCG
*
15077747 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15077812 CCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGG
* *
15077877 GGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* * * * * *
15077942 CCTACCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
390 CATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* *
15078007 TTTAAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCATGAAAAATAAAAAACGAGTCGTCTTG
455 TTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT-
* * * *
15078071 CCATGCAACTTCATGTGAAGGCTTGAGGGACCATTGTATGAATTTATAAGCAATAAAAATGGCAT
518 -C-TG--AC-TCA-GTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
* * *
15078136 TGGCATGCAGAGATATGAAGATGTGCCTAAACCCA-CTACCACCCTATTGATCCACGGCTTGTGC
577 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15078200 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
642 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* *
15078264 GCATAC-AGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCA
707 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCA
15078320 CATGCTGGGC
Statistics
Matches: 1465, Mismatches: 163, Indels: 65
0.87 0.10 0.04
Matches are distributed among these distances:
888 1 0.00
889 2 0.00
890 5 0.00
891 450 0.31
892 10 0.01
893 311 0.21
894 5 0.00
895 1 0.00
898 4 0.00
899 1 0.00
900 81 0.06
901 189 0.13
902 48 0.03
903 223 0.15
904 56 0.04
905 78 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTC
GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
TGACCGGAGCATTAGGGTTACGGCGATCGGGGGGGCCAGGGGAGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCTG
ACTCAGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGA
GGGGTACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCCCCCGCACGCT
CGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCG
Found at i:15079368 original size:718 final size:712
Alignment explanation
Indices: 15077545--15079740 Score: 3135
Period size: 718 Copynumber: 3.1 Consensus size: 712
15077535 CATTCCCAGT
* * * * * * * *
15077545 TTAAGCGTACGGAGTTCATTCCCAGTCTAATATCGGACCAGACCAAGGGTTGCGGCAGTACATAC
1 TTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATGC
** * * * * * *
15077610 TGGGCTCATGCATGTGCTGGGGCCGCATTTTTCATCGTAGCGGCACCATCGTCGGAGCATCAC-T
66 TGGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTTAGTCGGGGCACCATC-AC-CAG-ATCACGT
* * ** * *
15077674 -GGAGAACCTGACCGGCGACATTGGGGTTTCGGCGATCGGGGGTGCCGGGGGAGGTGTACGCACA
128 CGGAGAACCTGACCGACGACATTGGAGTTTCGATGATCGGGGGGGCCGGGGG-GGTGTGCGCACA
* *
15077738 TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
192 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAG
* *
15077803 AACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAT
257 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
15077868 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGATT
322 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
* * * ** *
15077933 TTTTTTATGCCTACCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAAATCCTTC
387 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *
15077998 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCATGAAAAATAAAAAACGA
452 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTACAAAAATCATGAAAAATAAGAAACGA
* * * * *
15078062 GTCGTCTTGCCATGCAACTTCATGTGAAGGCTTGAGGGACCATTGTATGAATTTATAAGCAATAA
516 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
15078127 AAATGGCATTGGCATGCAGAGATATGAAGATGTGCCTAAACCCA-CTACCACCCTATTGATCCAC
581 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
15078191 GGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGT
646 GGC-TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCATTTCGTCGGT
15078256 TGGC
709 TGGC
* * * * *
15078260 TTAGGCATACA-GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATG
1 TTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATG
* * * * * * *
15078324 CTGGGCTTGGGCATGTGCTGGGGCCACATTTTTCTTCA-CCGGGGCACCATCGCCGGAGCATCGC
65 CTGGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTT-AGTCGGGGCACCATCACCAGATCA-CGT
* *
15078388 CGGAGAACCTGACCGACGACATTGGAGTTCCGATGAT--AGGGGGCCGGGGGGGTGTGCGCACAT
128 CGGAGAACCTGACCGACGACATTGGAGTTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
* *
15078451 GATGTGCGATGGGTGCTGGTACTTTGCCCTTATATT-GGCCTCCTATCCCTCATCAAACCTTGAG
193 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCC-CCTATCCCTCATCAAACCTCGAG
*
15078515 AACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
257 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* ** *
15078580 CTGAAATGGGGACACTTTTTTCAAATGGTAATGAAATCTTGTACACTCTGAGTTTTTAGCTGAAT
322 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
* *
15078645 TTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTC
387 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
*
15078710 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTACAAAAATCGTGAAAAATAAGAAACGAG
452 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTACAAAAATCATGAAAAATAAGAAACGAG
*
15078775 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAA
517 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
15078840 AATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
582 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
15078905 ACTGGCACATCCCGTCTCTCTGGTCGGCATACTGCCTGCCCGCTCGCCCGCCCGCTCATTTCGTC
647 GCT-GCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGC-CGCCCGCCCGCTCATTTCGTC
15078970 GGTTGGC
706 GGTTGGC
** * *
15078977 TTAAGCATAAGGAGTTCATTCTTAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGC
1 TTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATGC
* * * *
15079042 TTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTAGTCGGGGCACCATCACCAGATCGCCGTCG
66 TGGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTTAGTCGGGGCACCATCACCAGATC-ACGTCG
15079107 GAGAACCTGACCGACGACATTGGAGTTTCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGA
130 GAGAACCTGACCGACGACATTGGAGTTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* *
15079171 TGTGTGATGGGTGCTGGTACTTGGCCCCTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAAC
*
15079236 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
15079301 AAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
* * * * *
15079366 TTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTTGGGCCAAAACTCATACCAA
390 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
15079431 AAAAATTTTAAAAAATCCCAAACCGCAAAAAG-TATCAAAAATCATGAAAAAT-AGAAAACAAGT
455 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTA-CAAAAATCATGAAAAATAAG-AAACGAGT
*
15079494 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAA
518 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
15079559 ATGGCTTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
583 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
15079624 CATGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCGCCCGCCTGCTCATTTCGTCGATTGG
648 C-TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCATTTCGTCGGTTGG
15079686 C
712 C
* * * *
15079687 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGTCCAAGGGTTACG
1 TTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACG
15079741 ACAGTAGGAT
Statistics
Matches: 1325, Mismatches: 133, Indels: 51
0.88 0.09 0.03
Matches are distributed among these distances:
710 72 0.05
711 7 0.01
712 407 0.31
713 57 0.04
714 3 0.00
715 125 0.09
716 4 0.00
717 181 0.14
718 457 0.34
719 12 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
TTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTTAGTCGGGGCACCATCACCAGATCACGTCGG
AGAACCTGACCGACGACATTGGAGTTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTACAAAAATCATGAAAAATAAGAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCATTTCGTCGGTTGGC
Found at i:15080785 original size:26 final size:26
Alignment explanation
Indices: 15080749--15080800 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15080739 TGGGTTGACT
15080749 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15080775 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15080801 AAAAATTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:15080960 original size:894 final size:885
Alignment explanation
Indices: 15078978--15080995 Score: 2669
Period size: 894 Copynumber: 2.2 Consensus size: 885
15078968 TCGGTTGGCT
** * * *
15078978 TAAGCATAAGGAGTTCATTCTTAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCT
1 TAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCT
* *
15079043 TGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTAGTCGGGGCACCATCACCAGATCGCCGTCGG
66 AGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C--A----C--CGG
* * * *
15079108 AGAACCTGACC-GACGACATTGGAGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
120 AGAACCTGACCAGACGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGAT
* *
15079172 GTGTGATGGGTGCTGGTACTTGGCCCCTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACT
185 GTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
15079237 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
250 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
*
15079302 AATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTT
315 AATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * *
15079367 TTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTTGGGCCAAAACTCATACCAAA
380 TTGTGCATGCCAACAAAAATACAAGAATCACGTCGAAAAAATTTGGGGCCAAAACTCATACCAAA
*
15079432 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTATCAAAAATCATGAAAAATAGAAAACAAGTCGT
445 AAAATTTAAAAAAATCCCAAACCGCAAAAAGTATCAAAAATCATGAAAAATAGAAAACAAGTCGT
* *
15079497 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
* * *
15079562 GCTTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCAT
575 GCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCAT
*
15079627 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCTCATTTCGTCGATTGGCTTAGG
640 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGG
* * * * *
15079692 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGTCCAAGGGTTACGACAGTAGGATTGGCAG
705 CATACGGAGTTCATTCCCAGTCTAAGATCAGATAGATCCAAGGGTTACGACAGCAGGATCGACAG
* * *** * ** *
15079757 CACGTAGAGGGGGACCTGGTTGATCCTCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
770 CACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGACTGAGCGCC
*
15079822 CGCACGCTCGTGTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTC
835 CACACGCTCGTGTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTC
* * * * *
15079873 TAAGTATATGGAGTTCATTCGCAGTCTAAGATCAGA-TCGGATCGAGGGTTGCGGTAGCACATGC
1 TAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGTAGCACATGC
* * * * *
15079937 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGTACCATCACCGGAGCATCGCCA
65 TAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAG-A--ACC-
* * *
15080002 GAGAACCTGATCGACGGCATTAGGGTTCCGACGAT--GGGGGGTCGGGGGGTGTGCGCACATGAT
126 -TG-ACC--A--GACGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGAT
*** *
15080065 GTGCGATGGGTGCTGGTACTTGGCTGTTAT-TATGGCCCCCTATCCCTCATCAAACCTTGAGAAC
185 GTGCGATGGGTGCTGGTACTTGGCCCCTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
15080129 TCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
249 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
*
15080194 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTT
** * * *
15080259 TTTGTGCATGCCAACAAAAATTTTAA-AACTC-CTTCCGAAAAAATTTGGGGCCAAAACTCCTTC
379 TTTGTGCATGCCAACAAAAA-TACAAGAA-TCACGT-CGAAAAAATTTGGGGCCAAAACTCATAC
* * * * * *
15080322 CGAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAG
441 CAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTATCAAAAATCATGAAAAATAGAAAACAAG
15080387 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
506 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
15080452 AATAGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCATCTACCACCCTATC-ATTCCAT
571 AATAGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGA-TCCAC
* *
15080516 GGCTTGCGCATCCCGTCTCTCTGGCC-ACTGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCG
635 GGCATGCGCATCCCGTCTCTCTGGCCGAC-GTAGT----GCCCG----CCCGCCCGCTCATTTCG
* * * * *
15080580 TCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTAGACTAGAT-CGAGGGTTGCTG
691 TCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TAGATCCAAGGGTTAC-G
* * **
15080644 -TAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACAT-CTCGTCTTT
754 ACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCT-GCCCCT
* * **
15080707 CTGGCTGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
818 CTGGCCGACTGAGCGCCCACACGCTCGTGTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA
15080772 GTC
883 GTC
* * * * * **
15080775 TAGGCATACGGAGTTCATTCCCAGTCAAAAATTGGACTGGACCGAGGGTTGCCATAGCACATGCT
1 TAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCT
15080840 AGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACC
66 AGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACC
*
15080905 AG-CGGCATTGGGGTTTC-AGGGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGG
131 AGACGGCATTGGGGTTTCGA-CGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGG
* *
15080968 GTGCTGGTACTTGGCCCTTGTATTGGCC
194 GTGCTGGTACTTGGCCCCTATATTGGCC
15080996 TTGTCTCTCT
Statistics
Matches: 977, Mismatches: 111, Indels: 71
0.84 0.10 0.06
Matches are distributed among these distances:
884 5 0.01
885 1 0.00
886 1 0.00
887 2 0.00
889 1 0.00
890 5 0.01
891 16 0.02
892 3 0.00
893 244 0.25
894 286 0.29
895 117 0.12
896 3 0.00
897 1 0.00
898 5 0.01
899 2 0.00
901 3 0.00
902 277 0.28
903 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
TAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCT
AGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACC
AGACGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGAATCACGTCGAAAAAATTTGGGGCCAAAACTCATACCAAAAAAATTTAAAA
AAATCCCAAACCGCAAAAAGTATCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACG
CAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGATAGATCCAAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGG
GGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGT
GTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTC
Found at i:15081272 original size:26 final size:26
Alignment explanation
Indices: 15081220--15081272 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
15081210 GTTGACTTAG
* * *
15081220 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATATAA
* *
15081246 GCATACGGATTTCATTCCCAATATAA
1 GCATACAGAGTTCATTCCCAATATAA
15081272 G
1 G
15081273 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATATAA
Found at i:15086727 original size:159 final size:158
Alignment explanation
Indices: 15086439--15086727 Score: 411
Period size: 159 Copynumber: 1.8 Consensus size: 158
15086429 CTATCACCGT
* * *
15086439 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGGCCGCTCGTTTATCGG
1 ATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCAGCGTAGCGCCCGGACGCTCGTTTATCGG
* * * *
15086504 TTGGCTTAGGCTCACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCA
66 TTGACTTAGGCTCACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
15086569 GGATCGGTAGCACGCAGAGAGGGACCCG
131 GGATCGGTAGCACGCAGAGAGGGACCCG
* * *
15086597 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGC-TGAGCGCCCGTACGCTCGTTTCATG
1 ATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCAGCGT-AGCGCCCGGACGCTCGTTT-ATC
* ***
15086661 GGTTGATTTAGGCAT-ACGGAGTTCATTCCTTTTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
64 GGTTGACTTAGGC-TCACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
15086725 GCA
128 GCA
15086728 CATGTTGGGC
Statistics
Matches: 114, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
157 1 0.01
158 53 0.46
159 59 0.52
160 1 0.01
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.22
Consensus pattern (158 bp):
ATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCAGCGTAGCGCCCGGACGCTCGTTTATCGG
TTGACTTAGGCTCACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
GGATCGGTAGCACGCAGAGAGGGACCCG
Found at i:15087770 original size:26 final size:26
Alignment explanation
Indices: 15087734--15087809 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
15087724 TAGTCATACG
*
15087734 GAGTTCATTCCCAGTCTAAACACACA
1 GAGTTCATTCCCAGTCTAAGCACACA
* * * *
15087760 GAGTTCATTCCCATTCTCAGCACGCG
1 GAGTTCATTCCCAGTCTAAGCACACA
15087786 GAGTTCATTCCCAGTCTAAGCACA
1 GAGTTCATTCCCAGTCTAAGCACA
15087810 TGTTGGGCTC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.25
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCACACA
Found at i:15090326 original size:885 final size:882
Alignment explanation
Indices: 15088588--15091949 Score: 4338
Period size: 885 Copynumber: 3.8 Consensus size: 882
15088578 GGTGGATCAT
* * *
15088588 CGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCAGGGGGTCGGGGGGTGTGCGCACATGA
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGCTCGGGGGGTGTGCGCACATGA
* * * **
15088653 TGAGCAATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATTTCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
15088718 TCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * * *
15088783 AAATGGGGGCATTTTTTTCAAACGGCCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
15088848 TTTAGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
261 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* *
15088913 ACAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
326 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
15088978 TCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
391 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
15089043 GGCATTGGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCT
456 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
15089108 TGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGCCTGCTCCTTTCGTCGGT
521 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
* * * *
15089173 TGGCTCAGG-ATGCGGGGGGAGTTCATTCCCAGTCTTAAGATCAGACCGGACATGCAGGGTTGC-
586 TGGCTTAGGCATAC----AGAGTTCATTCCCAGTC-TAAGATCAGACCGGAC-CG-AGGGTTGCG
* * **
15089236 AGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCTTTGGCTTACGCATGCCCGCCC
644 AGCAGCAGGATCGGCAGCACGCAGAAGGGGACTCGATCGAT-CTCCGGCTTACGCAT-CCCGCCC
* * * * *
15089301 CTCTTAGCCGGTTGAG-GCCCACACTCTCGTTTCGTGGG-TGACTTAGGGCATGACGAAGTTTCA
707 CTC-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCAT-ACGGA-TTTCA
* ** * ** * * * * * * *
15089364 TT-CCAGTCTAAG-ATCG-GACCAGACCGAGGGT-TG--CGGCAGCACATGTTGGGCT-CG--GG
768 TTCCCAGTCTAAGCATCGAGTCCATTCCCAGTCTAAGATCGGCTGGAC-CG-AGGGTTACGACAG
** *
15089420 CATGTGCTGTTGCCGCATTTTTCTTCGTCGCGGCACCATCACCGGAGCATCG-
831 CACATGCTG-TGCCGCATTTTTCTTCGTCGCGGCATCATCACCGGAGCATCGA
** * *
15089472 CCAAGGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGCTCGGGGAGTGTGCGCACATG
1 CGGA-GAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGCTCGGGGGGTGTGCGCACATG
** *
15089537 ATGTGCGATGGGTGCTTTTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
15089602 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGGCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
15089667 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTCTTAGCTGAAATT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** *
15089732 TTTTATGCATACCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGTCCAAAACTCCTTCCA
260 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
15089797 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
325 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
15089862 GTCCTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAGTTTACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
15089927 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
455 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
15089992 TTGCGCATCCCGTCTCGCTGGCC-AGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTTGTATCATCA
520 TTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCG
* * * *
15090056 TTTGGCTTAGGCATAC-GAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CA
584 GTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAGCA
* * * ** * *
15090119 GCAGGATCGGCACCACGTAGAGGGGGACTCGATCGATCTCCAACTTACGCATCCCGTCTCTCTGG
648 GCAGGATCGGCAGCACGCAGAAGGGGACTCGATCGATCTCCGGCTTACGCATCCCGCCCCTCTGG
* * *
15090184 CCGGCTGAGCGCCCGCACGCTTGTTTCGCGGGTTGACTTAGGCATATGGATTTCATTCCCAGTCT
713 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCT
* * *
15090249 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAACACATGCTT
778 AAGCAT-CG-AGTCCATTCCCAGTCTAAGATC-GGCTGGACCGAGGGTTACGACAGCACATGC-T
* * *
15090314 GTGCCACATTTTTCTTCGTCAG-GGCATCATCGCCGGAGCATCGT
839 GTGCCGCATTTTTCTTCGTC-GCGGCATCATCACCGGAGCATCGA
* * * *
15090358 CGGAGAACTTGACCGACAGCATTAGGGTTCTGACG---A-----TCGGGGGGTGTGCGCACATGA
1 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGCTCGGGGGGTGTGCGCACATGA
* * *
15090415 TGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
15090480 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
15090545 -GATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * ***
15090609 TTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCATTTTGA
261 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
** * *
15090673 AAAAATTAAAAAAAAACCCGAACCGCAAAAAGTTTCAAAAATCATTGAAAAATAGAAAACGAGTC
326 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTC
*
15090738 GTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
15090803 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
455 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * * *
15090868 TGGTGCATCTCGTCTCTCTGGCCGGCGAAGTGCCCGTCGGCCCACCCGCCCCCTCGTTTCGTCGG
520 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
* *
15090933 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-GTAGT
585 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAGCAGC
* * * * *
15090997 AGGATCGGCAGCATGCAGAGGGGGGCTCGATCGATC-CTCGGCTTACGCATCCTGCCCCTTTGGC
650 AGGATCGGCAGCACGCAGAAGGGGACTCGATCGATCTC-CGGCTTACGCATCCCGCCCCTCTGGC
** *
15091061 CGGCTGAGCGCCCGCACGCTCGTTTCGTTTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
714 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTA
* * * *
15091126 AGCATTTGGAGTGCATTCCCAGTCTAAGATCGGCTTGGACCGAGGGTTACGACAGCACATACTGG
779 AGCA--TCGAGTCCATTCCCAGTCTAAGATCGGC-TGGACCGAGGGTTACGACAGCACATGCTGT
* * ** ** * * *
15091191 GCTCGGGCA-TGTAC-AGGT-GCCACATTTTTCTTCGTCAGG-GCATC-A
841 GC-C--GCATTTTTCTTCGTCGCGGCA----TCATC-ACCGGAGCATCGA
* *
15091236 CGGGAGAACCTGACCGACGGCATTGGGGTTCC-AGTGATCTGGGGGCTCGGGGGGGTGTGCGCAC
1 C-GGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATC-AGGGGCTC-GGGGGGTGTGCGCAC
* **
15091300 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATAGGCCCCCTATCCCTTTTCAAACCTCGA
62 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
15091365 GAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
127 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
15091430 TCT-AGATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
192 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
15091494 GTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
257 TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * * *
15091559 CTGAAAAAATTTTAAGAAATCCCCAACCGTAAAAAGTTTCAAAAATCATGAAAAATCGAAAACGA
322 CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
15091624 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
387 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
15091689 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-GTGACCACCCTATCGATCCA
452 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCA
* * * * * * *
15091753 TGACTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCC-TCCGACCCACTTGTTTC
516 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCCGCTCGTTTC
* * * *
15091817 ATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGATG-TA
580 ATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA
* * * * * * * *
15091881 GTAGCAGGATCGACAGCACGTAGAAGGGGACTCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTT
645 GCAGCAGGATCGGCAGCACGCAGAAGGGGACTCGATCGATCTCCGGCTTACGCATCCCGCCCCTC
15091946 TGGC
710 TGGC
15091950 TTCCCAGTCT
Statistics
Matches: 2176, Mismatches: 245, Indels: 109
0.86 0.10 0.04
Matches are distributed among these distances:
874 1 0.00
875 98 0.05
876 508 0.23
877 180 0.08
878 25 0.01
879 78 0.04
880 13 0.01
881 16 0.01
882 19 0.01
883 4 0.00
884 8 0.00
885 607 0.28
886 8 0.00
888 6 0.00
889 520 0.24
890 85 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGCTCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAGCAGCA
GGATCGGCAGCACGCAGAAGGGGACTCGATCGATCTCCGGCTTACGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAG
CATCGAGTCCATTCCCAGTCTAAGATCGGCTGGACCGAGGGTTACGACAGCACATGCTGTGCCGC
ATTTTTCTTCGTCGCGGCATCATCACCGGAGCATCGA
Found at i:15093715 original size:26 final size:26
Alignment explanation
Indices: 15093679--15093731 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15093669 GTTGACTTAG
15093679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15093705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15093731 G
1 G
15093732 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15095070 original size:709 final size:711
Alignment explanation
Indices: 15093705--15095184 Score: 2186
Period size: 709 Copynumber: 2.1 Consensus size: 711
15093695 CCCAGTCTAA
* *
15093705 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCG-ATCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15093770 CTCGAGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCGAAACATCGTCGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCGAAACATCGCCCGAGA
* * * *
15093835 ACCTGATCGACAGTATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCA
130 ACCTGACCGACAGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCA
*
15093900 ATGGGTGATGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTTAGAACTCACACC
195 ATGGGTGATGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTGAGAACTCACACC
*
15093965 CCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
15094030 GACACTTTTTCGAATGGTCAAAAAATCTTGTACACTTCGACTTTGTAGCTGAATGTTTTTGGGCA
325 GACACTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAACTTTGTAGCTGAATGTTTTTGGGCA
* * *
15094095 CACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTTCTTCCGAAAAAATTT
390 CACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
15094160 TAAAAAATCTCGAACCGTAAAAACTTTCAAAAATTGTGAAAAATAGAGAATGAGTCGTCTTACCA
455 TAAAAAAACTCGAACCGTAAAAACTTTCAAAAATTATGAAAAACAGAAAAGGAGTCGTCTTACCA
* *
15094225 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTATACGAATTTACAAGCCATAAAAATGGCATTGG
*
15094290 CACATAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATC
585 CACATAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATA
*
15094355 CCGTCTCTCTGGCCGGCGTA-G-TG-C-CC-GCCCGCCCGCTCGTTTCATCGGGTGGCTTAG
650 CCGTCTCTCTGGCCGGCGTAGGCTGCCGCCTGCCCGCCCGCTCATTTCATCGGGTGGCTTAG
* * * *
15094412 GCATAATGAGTTCATTCCCCGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCACATGCTTGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACC-GATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15094477 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCCGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCGAAACATCGCCCGAGA
* *
15094542 ACTTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
130 ACCTGACCGACAGCATTGGGGTTCCAGCGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTGC
* * * * *
15094607 GATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCATA
194 AATGGGTGATGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACA
*
15094672 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15094737 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAAT-TTTTTGG
323 GGGACAC-TTTTTCAAATGGTCAAAAAATCTTGTACACTTCAACTTTGTAGCTGAATGTTTTTGG
** *
15094801 TGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCC-AAAAA
387 -GCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAA
* * *
15094865 TTTTTTAAAAAAAC-CAGAACCGTAAAAAGTTTTAAAAATTATGAAAAACAGAAAAGGAGTCGTC
451 -ATTTTAAAAAAACTC-GAACCGTAAAAACTTTCAAAAATTATGAAAAACAGAAAAGGAGTCGTC
* * * *
15094929 TTGCCATGAAACTTCACGTTAAGGCTT-AGGGACCATTATACGGATTTCCAAGCCATAAAAATGG
514 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATACGAATTTACAAGCCATAAAAATGG
* * *
15094993 CATTGGCACATAGAGATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATCCACGGCTTG
579 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTG
* * * *
15095058 CGTATACCGTCTCTTTGGCCGGTGTAGTGCTTGCCCGCCTGCCCGCCCGCTCATTTCATCGGTTG
644 CGCATACCGTCTCTCTGGCCGGCGTAG-GC-TG-CCGCCTGCCCGCCCGCTCATTTCATCGGGTG
15095123 GCTTAG
706 GCTTAG
* * * *
15095129 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACC-GATCGAGGGTTGCGGCAGCA
15095185 GGATCGGCAG
Statistics
Matches: 687, Mismatches: 71, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
707 141 0.21
708 81 0.12
709 209 0.30
710 173 0.25
711 1 0.00
713 2 0.00
715 1 0.00
716 2 0.00
717 77 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (711 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGATCGAGGGTTGCGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCGAAACATCGCCCGAGAA
CCTGACCGACAGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCAA
TGGGTGATGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAACTTTGTAGCTGAATGTTTTTGGGCAC
ACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAAACTCGAACCGTAAAAACTTTCAAAAATTATGAAAAACAGAAAAGGAGTCGTCTTACCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTATACGAATTTACAAGCCATAAAAATGGCATTGGC
ACATAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATAC
CGTCTCTCTGGCCGGCGTAGGCTGCCGCCTGCCCGCCCGCTCATTTCATCGGGTGGCTTAG
Found at i:15095324 original size:26 final size:26
Alignment explanation
Indices: 15095288--15095338 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15095278 TCTGACTTAG
15095288 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
15095314 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCACTCCCAGTCTA
15095339 GGATCAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15096171 original size:26 final size:26
Alignment explanation
Indices: 15096141--15096193 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15096131 GTTCACTTAG
15096141 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15096167 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15096193 G
1 G
15096194 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15097175 original size:704 final size:702
Alignment explanation
Indices: 15096167--15097602 Score: 2383
Period size: 704 Copynumber: 2.0 Consensus size: 702
15096157 CCCAGTCTAA
15096167 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** *
15096232 CTCAGGCATGTGCTGGAGTCGCATTTTTCTTCACCGGAGACCATCGCCGGAGAACTTGACTGACG
66 CTCAGGCATGTGCTGGAGTCGCATTTTTCTTCACCGGAGACCATCGCCGGAGAACCCGACAGACG
*
15096297 TCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
131 GCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
15096362 TACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGA
196 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGA
*
15096427 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
261 GCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
15096492 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAA
326 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAA
* * *
15096557 AAATACAAAGATCACATCTACCTAGTTTGGGACCAAAAGTCCTCCCGAAAAAATTTTGAAAAATC
391 AAATACAAAAATCACATCTACCTAGTTTGGGACCAAAAATCCTCCCGAAAAAATTTTGAAAAAGC
*
15096622 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAAACTTC
456 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAAACTTC
* **
15096687 ATGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
521 ACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
*
15096752 ATATAAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTC
586 ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTC
* * *
15096817 TGGCCGGAGTAGTGCCCGACTGCCCGCCCGTTCGTTTCGTC-AGTTGGCTTAG
651 TGGCCGGAGTAGTGCCCGACTGCCCGCACGCTCATTTCGTCGA-TTGGCTTAG
* * * *
15096869 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * *
15096934 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTTGCTGGGGCACCATCGCCGGAGAACCCGACAGAC
66 CTCAGGCATGTGCTGGAGTCGCATTTTTCTTCACCGGAG-ACCATCGCCGGAGAACCCGACAGAC
* * * *
15096999 GGCATT-GGGTTTTCGACGATCGGGTGGGCTGGAGGGGTGTGCGCACATGATGTGTGATGGGTGC
130 GGCATTAGGG-TTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
15097063 TGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACATCC-CCTTA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCTCCTTA
**
15097127 AAGAGTGTTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
257 AAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
15097192 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGGAAGCCA
322 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCA
**
15097257 ACAAAAATACAAAAATCATGTCTACCTAGTTTGGGACCAAAAATCCTCCCGAAAAAATTTTGAAA
387 ACAAAAATACAAAAATCACATCTACCTAGTTTGGGACCAAAAATCCTCCCGAAAAAATTTTGAAA
15097322 AAGCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAAA
452 AAGCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAAA
15097387 CTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
517 CTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * * * *
15097452 AGAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGTC
582 AGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
* *
15097517 TCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCACGCTCATTTCGTCGATTGGCTTAG
647 TCTCTGGCCGGAGTAGTGCCCGACTGCCCGCACGCTCATTTCGTCGATTGGCTTAG
* *
15097573 GCATACGAAGTTCATTCGTAGTCTAAGATC
1 GCATACGGAGTTCATTCCTAGTCTAAGATC
15097603 GAACCAGATT
Statistics
Matches: 681, Mismatches: 48, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
702 98 0.14
703 46 0.07
704 534 0.78
705 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (702 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGAGTCGCATTTTTCTTCACCGGAGACCATCGCCGGAGAACCCGACAGACG
GCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGA
GCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAA
AAATACAAAAATCACATCTACCTAGTTTGGGACCAAAAATCCTCCCGAAAAAATTTTGAAAAAGC
CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTC
TGGCCGGAGTAGTGCCCGACTGCCCGCACGCTCATTTCGTCGATTGGCTTAG
Found at i:15099346 original size:26 final size:26
Alignment explanation
Indices: 15099309--15099366 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
15099299 CGTGGGTTGG
*
15099309 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTACCAGT
15099336 CTAAGCATACGGAGTTCATTACCAGT
1 CTAAGCATACGGAGTTCATTACCAGT
15099362 CTAAG
1 CTAAG
15099367 ATCGGATTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTACCAGT
Found at i:15100190 original size:892 final size:889
Alignment explanation
Indices: 15098448--15110273 Score: 11742
Period size: 892 Copynumber: 13.5 Consensus size: 889
15098438 GTTGGCTTAG
* * *
15098448 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15098513 CTCAGGCATTTGCTGGTGCTGCATTTTTCTTCG-CGGGGGCACCATCGTCGGAGAACCCGACCGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCATCGGAGAACCTGACCGA
* * *
15098577 CAGCATTGGGG-TTCAGACGATCAGGGCGGG-CGGGGGGTGTGCGCACATGATGTGTGATGGGTG
130 CGGCATTGGGGTTTC-GACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
15098640 CTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACATCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * **
15098705 AAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATTAGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
15098770 TTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * * * *
15098835 ACAAAAATACAAGGATCAAGGCTACCAAGTTTGGGACCAAAAAC-GCTGCTGAAAGAATTTTAAA
388 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAA
* * * *
15098899 AAATCCTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAA
452 AAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
15098964 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATG
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
15099029 CAGAAATATGAAGATGTGCCTAAACCCACCAACCACCATATCGATCGACGGCTTGCGCATCTCGT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
15099094 CTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
647 CTCTCTGGCAGGCGTAGTGCCCG-TCGCCCG-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * * * *
15099159 ACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGCGACAGCAAGATCGACAGCAC
710 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * * *
15099224 ACAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCAACCCCTCTGGCCGACTGAGCGCCTGC
775 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCACCCGC
* *
15099289 ACGCTCGTTTCGTGGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAA
839 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15099340 GCATACGGAGTTCATTACCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15099405 CTCGGGCATGTGTTGGTTCCGAATTTTTCTTCGTCAGGGCACCATCATCGGATAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGAC
* * * *
15099470 GGTATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGTTGGGTGCTG
131 GGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
** * * * *
15099535 GTACTTCCCCCTTATAGTGGCCCCCTATCCCTCATCAAAGCTCGAGAACCCACACCCCCTGAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
** * * * *
15099600 AGCATTTGAGATTTTACAGGTTTGCCACCAGTAGCCATTAACGTGTCTAAAATGGGAACATTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
15099665 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAA
* *
15099729 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAA
390 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * ** *
15099794 TCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAGCGAGTTATCTTGCCGTGAAACT
455 TCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
15099859 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAG
520 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
15099924 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTC
585 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
15099989 TCTGGGAGGCGTAGTGCCCGATCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
650 TCTGGCAGGCGTAGTGCCCG-TCGCCCGCC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* ** * * *
15100054 GAGTTCA-TCCCTAGTCTAATATCAAATCAGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGC
713 GAGTTCATTCCC-AGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * * ** *
15100118 AGAGGGTGACCCAACCGATCCCCTGCTTGTGCATCTCGGCCCTCTGGCCGGCTGAATACCCACAC
777 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * * * **
15100183 ACTCGTTTCATGGGTTGCCTTAGGCATATGGAGTTCATTCTAAGTCTAA
841 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15100232 GCATACAGAGTTCATTCCCAGTCCAAGATCGGATGGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
15100297 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGAACCTGACAG-C
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGAC
* *
15100361 AGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
131 GGCATTGGGGTTTCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
15100426 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACGCTCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
15100491 AGAGCATTTGAGATTTTACAGG--T--T-----T-G---TT---G-G-C----A---GTACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
15100531 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTACATGCAAA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
15100596 AAAAAATACAAGGATCACGTCTAACAAGTTTGGAGCCAAACCTCATTCCGAAAAAATTTTAAAAA
389 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
15100661 ATCCCGAACCAG-AAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCATCTTGCCATGAAA
454 ATCCCGAACC-GTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * **
15100725 CTTCACGTAAAGGCTTAAGGGGCCATTGTATGAATTCACAGGCCATAAAAATGGCATTGGCACAC
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
15100790 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
15100855 TCTCTGGCCGACGTA------GT-G--C-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
648 TCTCTGGCAGGCGTAGTGCCCGTCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
15100910 GAGTTCATT-CC---C--AG-TC---T-A-A--GA----T-------C---A---GCAGCACGCA
713 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * ** * * ** *
15100944 GAGGGGGACCCGGCTGATCTTCGGCTTGCGCATCCCGCCCGTCTGGCCGGTTGAGTGCCCGCACT
778 GAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * *
15101009 CTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAATCTAA
842 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15101057 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15101122 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTGTTAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CATCG---GAGA
** *
15101187 ACCTGACCGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGAGCGGGGGGTGCGCACATGATGT
120 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATGT
*
15101252 GCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15101317 CACCACCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15101382 CGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
15101447 ATGCATGCCAACAAAAATACAAGGATCATGTGTATGAAGTTTGGGGCC--AA-----T-------
378 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
15101498 -A--TT------T-------CGTGAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
15101547 TGCCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTACGAATTTACAGGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15101612 ATTGGCATGTAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * ** * * *
15101677 GCATCCCGTCTCTCTGGCCGATGGAGTGCCCGTCG--TTCCACCCACTCGCTTCATCGGTTGGCT
638 GCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGTCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * * ** *
15101740 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCCAGGGTTGCGATAGTAGGATCG
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * *
15101805 ACAGCATGGAGAGGGGGACCCGACCGAT-CCC--C--G-ACAACAG-------GACC--C---G-
768 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGC
* *
15101851 -TCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * **
15101907 ACATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
15101972 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CA---TCGGAGA
* * * *
15102037 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGCGGGTATGCGCACATGATGT
120 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATGT
* *
15102102 GC-ATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCA-CAAACCTTGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15102165 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAG
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15102230 TGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTAGACTTTGAGTTTTTAGCTGAAATTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
15102295 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCTTTCCCAAAA
378 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *** * * *
15102360 AATTTTAAAAAATCTCGAACTACAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15102425 TGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15102490 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTCC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
15102555 GCATCCCGTCTCTCTGGCCA-GCGTAGTGCCCGGTCGTCAGCTCGTCGGCTCGTTTCGTCAGTTG
638 GCATCCCGTCTCTCTGG-CAGGCGTAGTGCCC-GTCGCCCGC-CGCCCGCTCGTTTCATCGGTTG
* ** ** * *
15102619 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCAATTGGACCAAGAGTTGCGGCAGC---A
700 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * *
15102681 T---------TCAGAGGGGGACCTGGCCAATCTCTGGCTTGCGCAT-CG------T-GCC-CCT-
765 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTG
*
15102727 ---A-----ACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
15102779 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
15102844 CTTAGGCATGTGCTGGTGCCGCATTTTTCTCCATCGGGGCACCATCGTCGGAGCATCAACGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CAT---CGGAGA
* * * * * * *
15102909 ACCTGACCGGCAGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGGGT
120 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15102974 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** ** * *
15103039 CCCTGTTATCGAGCGTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15103104 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
15103169 GCCTGCCAACAAAAATACAAGGATCACGTCTACCAA-TTCTGGGGACAAAA-TGCCTTATGAAAA
380 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT-TGGGGCCAAAACT-CCTTCCGAAAA
* * ** * *
15103232 AATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAATTGTGAAAAATAAAAAACGAGTCATCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15103296 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15103361 ATTGGCACGCACAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT--
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
15103424 G---CCCG--T-TC--GC---C--CGT---C-T-G--C-CCGCTTGCTCGTTTCATCGGTTGGCT
638 GCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGTCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * * * *
15103468 TAGGCATACAGAATTCATTCGCAGTCTAAGATCGGATCAGACTGAGGGTTGCAGCTGCAGGATCT
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCG
** * * * *** * * *
15103533 ATAGTAGGTAGAGGGGGACCCTTTCGATCCCCGACTTGTGCATTCCACCCCTCTGGCCGGCTGAG
768 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA-TCCGCCCCTCTGGCCGGCTGAG
* *
15103598 CA-TCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
15103655 GCATACGGAGTCCATTCTCAGTCTAAGATCAAATCAGACCGAGGGTTACGGTAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15103720 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CA---TCGGAGA
* * * * * *
15103785 ACCTGACCGATGACATTAGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGTG
120 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * * *
15103850 TGATCGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCTCTCATCAAACATCGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15103915 ACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTGAAA
249 A-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15103980 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
15104045 GTGCATGCC-AAAAAAATACAATGATCACGTCTAATAAGTTTGGGGCCAAAACTCCTTCCGAAAA
378 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
15104109 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
15104174 TGCCATCAAACTTCACGGTGAAGGC-TAGGGGACCATTGTTATGAATTTAGAAGCCCATTAAAAT
508 TGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAG-CCATAAAAAT
* * * * *
15104238 GCCATTGGCATGCAGGAAATATTG-AGATGTGCGCCTAAACCCACTTACCACCCTATTGATCGAT
570 GGCATTGGCATGCA-GAAATA-TGAAGATGT--GCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
15104302 GGCTTGCGCATTCCCGTCTCTCTAGCCA-ACGTAGTGCCCGCCTGCCCGCTTCCCCGCCTGCTCG
631 GGCTTGCGCA-TCCCGTCTCTCT-GGCAGGCGTAGTGCCCGTC-GCCCG-----CCGCCCGCTCG
* * * * *
15104366 TTTCGTCAGTTGGCCTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTT
688 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
** * * ** *
15104431 ATGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCC
753 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCGCCC
* * * * * **
15104496 CTCTGGGCAGTTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATGGGGAGTTCATTCC
817 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
15104561 CAGTCTCA
882 CAGTCTAA
** * * * *
15104569 GCATACGGAGTTCATTCATAGTCTAAGATCAGATCGGATCGAGGGTGGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15104634 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCAGAGGATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC-----A---TCGGAGA
* * * * * *
15104699 ACCTGATCGGCAGCATTGGCG-TTCTGACGATCGGGGCGGCCGGAGGGGTGTGGGCACATGTATG
120 ACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCCGG-GGGGTGTGCGCACATG-ATG
*
15104763 TGCGAT-GGTGCT-GTACTTTGGCCCTGTATATT--CACCCCTATTCCTCATCAAACCTCGCGAG
182 TGCGATGGGTGCTGGTAC-TTGGCCCT-TATATTGGC-CCCCTATCCCTCATCAAACCT--CGAG
* *
15104824 AACTCACA-CCCCTTAAAGAGCATTGTGGGTGATTGTTTCAGGTTTGCTAGCCAAGTAGCCATTA
242 AACTCACACCCCCTTAAAGAGCATT-T--GAGATT-TTACAGGTTTGCT-GCC-AGTAGCCATTA
* * * *
15104888 AAATGT-TGAAATTGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
301 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * *
15104952 CTGAA-TTTTTTGTGCATTCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGTGGCTAAAAC
366 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * ** **
15105016 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCCAAAATCGCGAAAAATAGAA
431 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAA
* * ** *
15105081 AACGAGTCGTCTTGCCATGAAGCATCACGTGAAGGCTTAATTGACCATTTTATGAATTTACAAGC
496 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*** * * *
15105146 CATAAAAATGGCATTGGCACATAAAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATTGA
561 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
15105211 TCCACAGCTTGCGTATCCCGTCTTTCTGGCCGGCGTAGTG--C-T-------CGCCCGCTCGTTT
626 TCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGTCGCCCGCCGCCCGCTCGTTT
* * * * * * * *
15105266 CATCTGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACAGAGGGTTACG
691 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCG
* * * * *
15105331 GTAGTAGGATCAGCAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
756 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCGCCCCTC
* * * * * *
15105396 TGGCCGGCTGA-AAGCTCGTACGCTCGTTTCGTGGGTTAACTTACGTATACGGAGTTCATTCCCA
820 TGGCCGGCTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
15105460 GTTTAA
884 GTCTAA
* * * * * *
15105466 GCATACAGACTTTATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15105531 CTCGGGCATGTGCTGGTGCCGGATTGTTCTTCGTCGGGGTGCCATCAGCGGAGCATCATCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG-G----CA-C----CATCATCGGAGA
* * * * * * * *
15105596 ACATGATCGACGACATTGGGGTTCCGGCGATCGGGGGGGCTGGGGAGGGTCTGCTCACATGATGT
120 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGC-CGGG-GGGTGTGCGCACATGATGT
* *
15105661 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15105726 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15105791 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** *
15105856 ACGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
378 GTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * * *
15105920 ATTTTTTTAAAAAATCCCAAACCG-ATAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
442 A-AATTTTAAAAAATCCCGAACCGTA-AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
*
15105984 TGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
505 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
15106049 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
570 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * ** *
15106114 TGTACATCCCGTCTCTCTGGAAGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCATTTCATCGGT
635 TGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCC-GTCGCCCG-CCGCCCGCTCGTTTCATCGGT
* * * * *
15106179 TGGCTTAGGCATACGGAGTTGATTCCCAGTCTAGGATTGGACCAGACCGAGGGTTGCGGCAGCAA
698 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAG
* * * *
15106244 GATCGGCAGCACGTAAAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
763 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGG
* * * * *
15106309 CTGAGCGCTCACATGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAA
827 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15106372 GCATACGAAGTTCATTCCCAATCTAAG-TCAGATCGGACCGAGGGTTACGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
15106436 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCAAAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CATCG---GAGA
* * * * *
15106501 ACCTGATCGACGGTATTGGGGTTCCGACGATCGAGGGGG-CGGGGGGTATGCGCACATGATGTGC
120 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
15106565 GAAGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15106630 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15106694 GGGACACTTTTTTCAAATGGTCACAAAATCTGGTAAACTTCCAGTTTTTAGCTGATTTTTTTTGT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
15106759 GCATGCCAACAAAAGA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
380 GCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15106823 A-TTT------T-----A----AAAAA----T-----T-ATGAAAAATAG-AAACGAGTCATCTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
**
15106861 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15106926 TTGGCACGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCG
574 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** * *
15106991 CATCTCGTCTCTATGGTC-GGCATAGTG-CC-T-GCCCGTCCGCTTGCTCGTTTCGTCAGTTGGC
639 CATCCCGTCTCTCTGG-CAGGCGTAGTGCCCGTCGCCCG-CCGCCCGCTCGTTTCATCGGTTGGC
* * * * *
15107052 TTAGGTATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACTGAGGGTTGCGGTAGCAGGAT
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
15107116 CGGCAACACGCAGAGGGGGACCCGGCTGATCCTTC-GCTTCCACATACCGCCCCTTTGGCCGGTT
766 CGGCAGCACGCAGAGGGGGACCCGACCGATCC-CCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCT
* *
15107180 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
829 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15107241 G-AT-C-G-G---A----C---C--A-A----AT-----CGAGGGTTGTGGCAGCACGTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15107280 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGCGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAG-A--ACC--TG-
*** *
15107345 ACCTGACCAGCGACATTGGGGTTTCGGTAATCGGGGGGGCCGGGGGGGGTGTGCGCACATGCTGT
125 ACC-GA-C-G-G-CATTGGGGTTTCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* *
15107410 GCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * **
15107475 CACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGTTGATAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15107540 TGGGGACACTGTTTCCAAATGGTCACAAAATCTTGTGCGCGCCAACAATCGAGTTTTTAGCTGAA
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-----AC-AC-TTCGAGTTTTTAGCTGAA
** * * *
15107605 TTTTTTTGTGCGCGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAACTCCTT
371 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
15107670 CCGAAAAAATTTTAACAAATCCTGAACTGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGA
436 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGA
* * * *
15107735 GTCGTCCTACCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTCACAAGCCATAA
501 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * * *
15107800 AAATGGCATTGGCAAACAGAAATACGAAGACGTGCCTAAACCCACCTACCAACCTATCGATCCAC
566 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * * * *
15107865 GGCTTGTGCATCCCTTTTCTCTGGCTGGCGTAGTGCCCGCCTACCCACCCGCCCGCTCGATTCGT
631 GGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGTC-GCCC-GCCGCCCGCTCGTTTCAT
** * * * * * *
15107930 CAATGGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGGACCGAAGGTTGCGACA
694 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCA
* * * * * * * *
15107995 GCAGGATCGGCAGCACGTAGAGGGGGTCCCGGCCAAACCCAGGCTTGCGTATCCCGCCCTTCTGG
759 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGG
* * * *
15108060 CCGGCTGAGCGCCCGCACGCTTGTTTTGTAGGTTGAC-T-----TA--G-G--------CA---T
823 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
15108105 -A
888 AA
* * * * * * *
15108106 -CA-A---AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGCGTTACGGTAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15108166 CTCGGACATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGCA-C--CATC---G----T------C
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGAC
*
15108215 GG-A-----G--T-----ATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
131 GGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * *
15108267 GTGCTTGGCCCTCATATTGACCCCCTATCCC-CATCAAACCTCAAGAACTCACACCTCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * **
15108331 AGCATTTGAGATTTTACAGGTTTACTGCCAATAGCCATTAAAGTGTTTGAAATCAGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
15108396 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAGA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* ** *
15108461 AAAATACAAGGATCAAGTCTAGTAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT--AAAA
391 AAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
*
15108524 T-------CGT-----G-----AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
455 TCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
15108572 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTGGCATGCAG
520 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
15108637 AAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCTTCTC
585 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
15108702 TCTGGCCA-GCGTAGTGCCTGCCCGCCCGCCAGCCTGCTAGTTTCATCGGTTGGCTTAGGCGTAC
650 TCTGG-CAGGCGTAGTGCCCG-TCGCCCGCC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * * * *
15108766 GAAGTTCATTCTCAGTCTAAGATTGTA-CTAGACCGAAGGTTGCGGTAGCAGGATTGGTAGCACG
712 GGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * *
15108830 TAGAGGGGGACCCAACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTA
776 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCACCCGCA
* * *
15108895 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCTAGTCTAA
840 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15108945 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15109010 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCCCAGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CA---TCGGAGA
* * * *
15109075 ACCTGACCGGCGGTAATGGGG-TTCTGGCGAT--GGGGGGCCGGGGGGTGTGCGCACATGATGTG
120 ACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
15109137 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15109202 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTA-CCATTAAAGTGTCCGAAAC
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15109266 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15109331 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAA
379 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
15109396 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15109461 GCCATGAAACTTCACGTGAAGGATTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** *
15109526 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCG
574 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *** * *
15109591 CATCCCGTCTCTCTGGC---CCT-GTAAACG-CACCC-CCG-CCGCTAC---TCAGTCAGTTGGC
639 CATCCCGTCTCTCTGGCAGGCGTAGTGCCCGTCGCCCGCCGCCCGCT-CGTTTCA-TCGGTTGGC
* * * * ** * * * *
15109646 TTAGCCATAC-GAGTTCATT--CAGTCTAAGAT-TGACCGGATTGAGGGTTACAG-A-AAAGATC
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATC
*** * * ** * * * *
15109705 AATAAACCAATTGCAAGAATGGGA-CCGACAGATCCCTGGCTT-CG-A-CCCCCCCTATGG-C-G
767 --GGCAGC-A-CGC-AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGG
* * * * * * ** *
15109764 CTGACCGCCAGCCACACTTGTTTCAT-GG-TGACTTAGGCA-A-GTTGTTCATT-CCAGTTTAA
827 CTGAGCACCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15109823 GCATA-GGCAGTTTCA-TCCCAGTCTAA-ATC-GAACGGACTGA-GGTT-CGCCAGCACATGCT-
1 GCATACGG-AG-TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTG
* ** * * *
15109881 GGCTTGGGCATGTGCTGGT----CA-GGTTCTTTGCCGGAGGCCCCA-CGGAGCTGCGAGAGAAC
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GGCACCATC--A--T-CG-GAGAAC
* * * * * ** *
15109940 ATGA--G-C-CCAGTT--GGCTACG--GA--GGGCGGGCC--GTAGTGCGAC-CA-ATAGAT-TG
122 CTGACCGACGGCA-TTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTG-CGCACAT-GATGTG
*
15109990 C--T-GGTGCT-GTAC-T-G-CCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15110048 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** **
15110113 GGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTTCAAAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15110178 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
379 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15110243 ATTTTAAAAAATCCCGAACTGTAAAAAGTTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTT
15110274 CATCGTAGTG
Statistics
Matches: 9205, Mismatches: 1219, Indels: 1065
0.80 0.11 0.09
Matches are distributed among these distances:
817 3 0.00
818 326 0.04
819 4 0.00
823 1 0.00
824 2 0.00
825 198 0.02
826 2 0.00
827 1 0.00
828 2 0.00
831 2 0.00
832 179 0.02
833 5 0.00
834 1 0.00
835 6 0.00
836 73 0.01
837 172 0.02
838 6 0.00
839 6 0.00
840 46 0.00
841 5 0.00
842 3 0.00
843 107 0.01
844 224 0.02
845 5 0.00
846 164 0.02
847 254 0.03
848 268 0.03
849 53 0.01
850 224 0.02
851 4 0.00
852 3 0.00
853 12 0.00
854 18 0.00
855 85 0.01
856 56 0.01
857 6 0.00
858 34 0.00
859 5 0.00
860 8 0.00
861 6 0.00
862 105 0.01
863 12 0.00
864 4 0.00
865 8 0.00
866 7 0.00
867 6 0.00
868 330 0.04
869 197 0.02
870 36 0.00
871 233 0.03
872 413 0.04
873 175 0.02
874 24 0.00
875 10 0.00
876 198 0.02
877 162 0.02
878 397 0.04
879 40 0.00
880 28 0.00
881 68 0.01
882 405 0.04
883 117 0.01
884 21 0.00
885 5 0.00
886 218 0.02
887 17 0.00
888 16 0.00
889 22 0.00
890 18 0.00
891 72 0.01
892 931 0.10
893 144 0.02
894 252 0.03
895 2 0.00
896 17 0.00
897 334 0.04
898 53 0.01
899 14 0.00
900 210 0.02
901 137 0.01
902 87 0.01
903 6 0.00
904 4 0.00
905 101 0.01
906 207 0.02
907 1 0.00
908 2 0.00
909 1 0.00
911 1 0.00
912 3 0.00
913 154 0.02
914 283 0.03
915 17 0.00
916 22 0.00
917 25 0.00
918 47 0.01
919 192 0.02
920 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGAC
GGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCAGGCGTAGTGCCCGTCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15101070 original size:26 final size:26
Alignment explanation
Indices: 15101031--15101083 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15101021 GTTGACTTAG
15101031 GCATACGGAATTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
*
15101057 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACGGAA-TTCATTCCCAATCTAA
15101083 G
1 G
15101084 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:15101918 original size:26 final size:26
Alignment explanation
Indices: 15101882--15101932 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15101872 TTGACTTAGG
* *
15101882 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACAGAGTTCATTCCCAATCTAAA
15101908 CATACAGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATTCCCAATCTAA
15101933 GATCAGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAA
Found at i:15102789 original size:26 final size:26
Alignment explanation
Indices: 15102753--15102805 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15102743 GTTGACTTAG
15102753 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15102779 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15102805 G
1 G
15102806 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15103665 original size:26 final size:26
Alignment explanation
Indices: 15103629--15103681 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15103619 GTTAACTTAG
*
15103629 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
15103655 GCATACGGAGTCCATTCTCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15103681 G
1 G
15103682 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:15105538 original size:897 final size:889
Alignment explanation
Indices: 15102732--15110273 Score: 7630
Period size: 897 Copynumber: 8.6 Consensus size: 889
15102722 CCCCTAACGT
15102732 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *** **
15102797 CAGTCTAAGATCGGACCGGACTGAGGGTTGTAGCAGCACATGCTGGGCTTAGGCATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** *
15102862 CCGCATTTTTCTCCATCGGGGCACCATCGTCGGAGCATCAACGGAGAACCTGACCGGCAGCATTG
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGC-GCATTG
* * *
15102927 GGGTTCCGACGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGGGTGATGGGTGCTGGTACTTG
195 GGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** ** *
15102992 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCTGTTATCGAGCGTTT
259 GCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
15103057 GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
15103122 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAACAAAAATAC
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** *
15103187 AAGGATCACGTCTACCAA-TTCTGGGGACAAAA-TGCCTTATGAAAAAATTTTAAAAAATCTCGA
453 AAGGATCACGTCTACCAAGTT-TGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCTCAA
* * ** * * *
15103250 ACCGTAAAAAGTTTCAAAATTGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCATGTG
516 ACCGCAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
15103315 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCACAAATATG
581 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
*
15103380 TAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT--G---CCCG--T-TC--GCC
646 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** * * * *
15103435 --CGT-CTG-C-CCGCTTGCTCGTTTCATCGGTTGGCTTAGGCATACAGAATTCATTCGCAGTCT
711 GGCGTAGTGCCTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *** * * ***
15103495 AAGATCGGATCAGACTGAGGGTTGCAGCT-GCAGGATCTATAGTAGGTAGAGGGGGACCCTTTCG
776 AAGATCAGACCAGACCGAGGGTTGC-GGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCG
* * * * *
15103559 ATCCCCGACTTGTGCATTCCACCCCTCTGGCCGGCTG--AGCATCGCACGC
840 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGACAGC-CCGCACGC
* * *
15103608 TCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCT
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
** * * * * *
15103673 CAGTCTAAGATCAAATCAGACCGAGGGTTACGGTAGCACGTGCTGGGCTCGGGCATGTGTTGGTG
66 CAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * ** *
15103738 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGATGACATTA
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCG-CATTG
* * * *
15103803 GGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGTGTGATCGGTGCTGGTACTT
195 GGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
15103868 AGCCCTTATATTGGCCCCCTATCTCTCATCAAACATCGAGAACTCACACCCCCCTTAAAGAGCAT
258 GGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCAT
*
15103933 TTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
321 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
15103998 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAT
386 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* **
15104062 ACAATGATCACGTCTAATAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAA
451 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAA
* * *
15104127 ACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGG
516 ACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-G
* * * * **
15104192 TGAAGGC-TAGGGGACCATTGTTATGAATTTAGAAGCCCATTAAAATGCCATTGGCATGCAGGAA
579 TGAAGGCTTAAGGGACCATTG-TATGAATTTACAAG-CCATAAAAATGGCATTGGCACACA-GAA
* * * *
15104256 ATATTG-AGATGTGCGCCTAAACCCACTTACCACCCTATTGATCGATGGCTTGCGCATTCCCGTC
641 ATA-TGAAGATGT--GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCCCGTC
* ** * * *
15104320 TCTCTAGCCAACGTAGTGCCCGCCTGCCCGCTTCCCCGCCTGCTCGTTTCGTCAGTTGGCCTAGC
702 TCTCTGGCCGGCGTAGT----GCCT--CCG------C-CC-GCTCGTTTCATCAGTTGGCTTAGG
* ** * * *
15104385 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATGGCAGTAGGATCGGTAG
753 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* ** * * * *
15104450 CACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCAGTTGAGCA-C
818 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-CAGC
*
15104514 CCGTACGC
882 CCGCACGC
* ** * *
15104522 TCATTTCGTGGGTTGACTTAGGCATGGGGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCA
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * ** *
15104587 TAGTCTAAGATCAGATCGGA-TCGAGGGTGGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
66 CAGTCTAAGATCGGATCGGACT-GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
15104651 GCCACATTTTTCTTCGTCAGGGCACCATCGTCAGAGGATTGTCGGAGAACCTGATCGGCAGCATT
130 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGC-GCATT
* * *
15104716 GGCGTTCTGACGATCGGGGCGGCCGGAGGGGTGTGGGCACATGTATGTGCGAT-GGTGCT-GTAC
194 GGGGTTCCGACGATCGGGG-GGCCGG-GGGGTGTGCGCACATG-ATGTGCGATGGGTGCTGGTAC
*
15104779 TTTGGCCCTGTATATT-CACCCCTATTCCTCATCAAACCTCGCGAGAACTCACA-CCCCTTAAAG
256 -TTGGCCCT-TATATTGC-CCCCTATCCCTCATCAAACCT--CGAGAACTCACACCCCCTTAAAG
* * * *
15104842 AGCATTGTGGGTGATTGTTTCAGGTTTGCTAGCCAAGTAGCCATTAAAATGT-TGAAATTGGGAC
316 AGCATT-T--GAGATT-TTACAGGTTTGCT-GCC-AGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
15104906 AGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTGTGCATT
375 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
15104970 CCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGTGGCTAAAACTCCTTCCGAAAAAATTTTA
440 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * **
15105035 AAAAATCTCGAACCGCAAAAAGTTTCCAAAATCGCGAAAAATAGAAAACGAGTCGTCTTGCCATG
505 AAAAATCTCAAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * ** *
15105100 AAGCATCACGTGAAGGCTTAATTGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCA
569 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
15105165 CATAAAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGTATCCC
634 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
15105230 GTCTTTCTGGCCGGCGTAGTG-CT-CGCCCGCTCGTTTCATCTGTTGGTTTAGGCATACGGAGTT
699 GTCTCTCTGGCCGGCGTAGTGCCTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTT
* * * * * *
15105293 CATTCCCAGTCTAGGATCAGACCGGACAGAGGGTTACGGTAGTAGGATCAGCAGCACGTAGAGGG
764 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGG
* * * *
15105358 GGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAAAGCTCGTACGC
829 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGACAGCCCGCACGC
* * * * * * *
15105419 TCGTTTCGTGGGTTAACTTACGTATACGGAGTTCATTCCCAGTTTAAGCATACAGACTTTATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
15105484 CAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** * * * *
15105549 CCGGATTGTTCTTCGTCGGGGTGCCATCAG-CGGAGCATCATCGGAAAACATGATCGACGACATT
131 CCGCATTTTTCTTCGTCGGGGCACCATC-GTCGGAGCATCGTCGGAGAACCTGATCGGCG-CATT
* * * * *
15105613 GGGGTTCCGGCGATCGGGGGGGCTGGGGAGGGTCTGCTCACATGATGTGTGATGGGTGCTGGTAC
194 GGGGTTCCGACGATC-GGGGGGC-CGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
15105678 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
256 TTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
15105743 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
320 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * ** *
15105808 AATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTACGCATGCCAAAAAAAA
385 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAA
* ** *
15105873 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAATTTTTTTAAAAAATCC
449 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCT
* *
15105937 CAAACCG-ATAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTGTTGCCATGAAACTTC
513 CAAACCGCA-AAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
** *
15106001 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
576 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
**
15106066 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTACATCCCGTCTCTC
641 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * * *
15106131 TGGAAGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGA
706 TGGCCGGCGTAGT--------G-CC-TCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGA
* * ** * * *
15106196 GTTGATTCCCAGTCTAGGATTGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGTAAA
761 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGA
* * * * *
15106261 AGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC-GCTCACATGC
826 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-CAGCCCGCACGC
* *
15106325 TCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * *
15106390 CAATCTAAG-TCAGATCGGACCGAGGGTTACGGTAGCACATACTGGGCTCGGGCATGTGTTGGTG
66 CAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** ** * * *
15106454 TCGCATTTTTCTTCACCGGGGCACCATCGTCAAAGCATCGTCAGAGAACCTGATCGACGGTATTG
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGC-GCATTG
* *
15106519 GGGTTCCGACGATCGAGGGGG-CGGGGGGTATGCGCACATGATGTGCGAAGGGTGCTGGTACTTG
195 GGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
15106583 GTCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTT
259 GCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
15106647 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
15106712 GGTCACAAAATCTGGTAAACTTCCAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAGA-A
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATA
15106776 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA--TT------T-T---A
452 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAA
*
15106829 ----AAAAA---T-----T-ATGAAAAATAG-AAACGAGTCATCTTGCCATGAAACTTCACGTGA
517 CCGCAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** *
15106880 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCACGCAGAAATATGA
582 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * * * *
15106945 AGGTGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCGCATCTCGTCTCTATGGTCG
647 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
15107010 GCATAGTGCCTGCCCGTCCGCTTGCTCGTTTCGTCAGTTGGCTTAGGTATACGGAGTTCATTCCC
712 GCGTAGTGCCT--CCG-CC-C--GCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCC
* * *
15107075 AGTCTAAGATC-GAACC-GAACTGAGGGTTGCGGTAGCAGGATCGGCAACACGCAGAGGGGGACC
771 AGTCTAAGATCAG-ACCAG-ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACC
* * * * * * * *
15107138 CGGCTGATCCTTC-GCTTCCACATACCGCCCCTTTGGCCGGTTGAGCA-CCCGCACGC
834 CGACCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-CAGCCCGCACGC
* *
15107194 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-AT-C-G-G---A----
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
** * *
15107248 C---C--A-A----AT----C-GAGGGTTGTGGCAGCACGTGCTAGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** * *
15107298 CCGCATTTTTCTTCGTCGCGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCAGCGACATTG
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCG-CATTG
* *** *
15107363 GGGTTTCGGTAATCGGGGGGGCCGGGGGGGGTGTGCGCACATGCTGTGCGATGGGTGCTGGTACT
195 GGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
15107428 TGGCTCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
257 TGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * ** * *
15107493 TTCAGATTTTATAGGTTTGTTGATAGTAGCCATTAAAGTGTCTGAAATGGGGACACTGTTTCCAA
321 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * **
15107558 ATGGTCACAAAATCTTGTGCGCGCCAACAATCGAGTTTTTAGCTGAATTTTTTTGTGCGCGCCAA
386 ATGGTCACAAAATCTTGT-----AC-AC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
15107623 CAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAACAA
444 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
15107688 ATC-CTGAACTGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCCTACCATGAAA
509 ATCTC-AAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
15107752 CTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCAAAC
572 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * * * * *
15107817 AGAAATACGAAGACGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGTGCATCCCTTT
637 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
15107882 TCTCTGGCTGGCGTAGTGCCCGCCTACCCACCCGCCCGCTCGATTCGTCAATGGGCTTAGGCATA
702 TCTCTGGCCGGCGTAGT----GCCT------CCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATA
* * * * **
15107947 CGGAGTTCATTCCCAGTCTAAGAT-TGAATCGGACCGAAGGTTGCGACAGCAGGATCGGCAGCAC
757 CGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * * * * *
15108011 GTAGAGGGGGTCCCGGCCAAACCCAGGCTTGCGTATCCCGCCCTTCTGGCCGGCTGAGC-GCCCG
821 GTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-CAGCCCG
15108075 CACGC
885 CACGC
* * *
15108080 TTGTTTTGTAGGTTGAC-T-----TA--G-G--------CA---T-A-CA-A---AGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * *
15108119 CAGTCTAAGATCGGACCGGACTGAGCGTTACGGTAGCACATACTAGGCTCGGACATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
15108184 CTGTATTTTTCTTCGTCGAGG---CA----C----CATCGTC-G-G-A---G-T------A----
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCGCATTGG
* *
15108221 ---T----CG---GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTGCTTGGC
196 GGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
15108276 CCTCATATTGACCCCCTATCCC-CATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGA
261 CCTTATATTG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * **
15108340 GATTTTACAGGTTTACTGCCAATAGCCATTAAAGTGTTTGAAATCAGGACACTTTTTTCAAATGG
325 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
15108405 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAGAAAAATACAA
390 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** *
15108470 GGATCAAGTCTAGTAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT--AAAA--T------
455 GGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACC
* *
15108525 -C-----G--TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
519 GCAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* **
15108582 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTGGCATGCAGAAATATGAAG
584 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* * *
15108647 ATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCAGC
649 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
15108712 GTAGTGCCTGCCCGCCCGCCAGCCTGCTAGTTTCATCGGTTGGCTTAGGCGTACGAAGTTCATTC
714 GTAGTGCCT--CCG--C-CC-G-CT-C--GTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
15108777 TCAGTCTAAGAT-TGTACTAGACCGAAGGTTGCGGTAGCAGGATTGGTAGCACGTAGAGGGGGAC
769 CCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGAC
* * * *
15108841 CCAACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCA-CCCGTACGC
833 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-CAGCCCGCACGC
* * *
15108898 TCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCTAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * *
15108963 CAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTG
66 CAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
15109028 TCGCATTTTTCTTCGTCGGGGCACCATC-CCAGGAGCATCGTCGGAGAACCTGACCGGCGGTAAT
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGATCGGC-GCATT
* *
15109092 GGGGTTCTGGCGAT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
194 GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
15109156 GCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
259 GCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
15109221 GAGATTTTATAGGTTTGCTACCAGTA-CCATTAAAGTGTCCGAAACGGGGACACTTTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
15109285 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
15109350 AAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCAAAC
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAAC
* * *
15109415 CGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
518 CGCAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
15109480 AGGATTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
582 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
*
15109545 AGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-
647 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
** * * *
15109609 -CTGTA-AACGCACC-CCCGC-CGCTACTCAGTCAGTTGGCTTAGCCATAC-GAGTTCATT--CA
712 GC-GTAGTGC-CTCCGCCCGCTCG-T-TTCA-TCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * * * * *** * * * **
15109667 GTCTAAGAT-TGACCGGATTGAGGGTTACAG-A-AAAGATCAATAAACCAATTGCAAGAATGGGA
772 GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATC--GGCAGC-A-CG-TAGAGGGGGA
* * * * * *
15109729 -CCGACAGATCCCTGGCTT-CG-A-CCC-CCCCTATGG-C-GCTGACCGCCAGCCACAC
832 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGACAGCCCG-CACGC
* * ** *
15109781 TTGTTTCAT-GG-TGACTTAGGCA-A-GTTGTTCATT-CCAGTTTAAGCATA-GGCAGTTTCA-T
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG-AG-TTCATT
* * *
15109839 CCCAGTCTAA-ATC-GAACGGACTGA-GGTT-CGCCAGCACATGCT-GGCTTGGGCATGTGCTGG
64 CCCAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** * * * * *
15109899 T----CA-GGTTCTTTGCCGGAGGC-CC--C-ACGGAGC-T-G-CGAGAGAACATGA---GCCCA
129 TGCCGCATTTTTCTTCGTCGG-GGCACCATCGTCGGAGCATCGTCG-GAGAACCTGATCGGCGCA
* * * **
15109949 -----GTT--GGCTA-CGGAGGG-CGGGCCGTAGTGCG-ACCAATAGAT-TGC--T-GGTGCT-G
192 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGT-GTGCGCA-C-AT-GATGTGCGATGGGTGCTGG
*
15109999 TAC-T-G-CCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAA
253 TACTTGGCCCTTATATTG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
15110061 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAATGGGCACACTTTTT
317 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
** **
15110126 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTTCAAAATTTTTTTGTGCATGCCAACAA
382 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
15110191 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
447 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
15110256 CCGAACTGTAAAAAGTTT
512 TCAAACCGCAAAAAGTTT
15110274 CATCGTAGTG
Statistics
Matches: 5622, Mismatches: 733, Indels: 652
0.80 0.10 0.09
Matches are distributed among these distances:
810 4 0.00
812 1 0.00
813 2 0.00
814 5 0.00
815 2 0.00
816 1 0.00
818 314 0.06
819 2 0.00
821 1 0.00
824 2 0.00
826 2 0.00
827 1 0.00
835 4 0.00
836 53 0.01
837 34 0.01
838 2 0.00
839 1 0.00
840 2 0.00
841 1 0.00
843 108 0.02
844 241 0.04
845 4 0.00
846 93 0.02
847 248 0.04
848 91 0.02
849 6 0.00
850 7 0.00
851 8 0.00
852 15 0.00
853 6 0.00
854 10 0.00
855 91 0.02
856 1 0.00
857 3 0.00
858 2 0.00
859 1 0.00
860 2 0.00
861 2 0.00
862 3 0.00
863 11 0.00
864 4 0.00
865 12 0.00
866 5 0.00
867 4 0.00
868 15 0.00
869 181 0.03
870 1 0.00
871 6 0.00
872 1 0.00
873 173 0.03
874 26 0.00
875 11 0.00
876 197 0.04
877 162 0.03
878 212 0.04
879 33 0.01
880 27 0.00
881 68 0.01
882 337 0.06
883 113 0.02
884 16 0.00
885 9 0.00
886 218 0.04
887 17 0.00
888 18 0.00
889 25 0.00
890 20 0.00
891 18 0.00
892 67 0.01
893 30 0.01
894 249 0.04
896 17 0.00
897 343 0.06
898 60 0.01
899 10 0.00
900 217 0.04
901 134 0.02
902 83 0.01
903 3 0.00
904 3 0.00
905 119 0.02
906 209 0.04
908 2 0.00
909 1 0.00
911 1 0.00
912 1 0.00
913 148 0.03
914 288 0.05
915 19 0.00
916 23 0.00
917 24 0.00
918 49 0.01
919 191 0.03
920 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCGCATTGG
GGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGC
AAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
AGTGCCTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCC
GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGACAGCCCGCACGC
Found at i:15106383 original size:26 final size:26
Alignment explanation
Indices: 15106346--15106398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15106336 GTTGATTTAG
* *
15106346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15106372 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15106398 G
1 G
15106399 TCAGATCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15108948 original size:26 final size:26
Alignment explanation
Indices: 15108919--15108971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15108909 GTTGACTTAG
*
15108919 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
15108945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
15108971 G
1 G
15108972 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:15110485 original size:25 final size:26
Alignment explanation
Indices: 15110434--15110485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15110424 GTTGACTTAG
*
15110434 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
*
15110460 GCATACGGAGTCCATT-CCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
15110485 G
1 G
15110486 ATCAAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:15112143 original size:406 final size:407
Alignment explanation
Indices: 15111371--15112181 Score: 1369
Period size: 406 Copynumber: 2.0 Consensus size: 407
15111361 TACTTGGCCC
* *
15111371 TTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGA
1 TTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGA
*
15111436 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTC
66 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAAACTTTTTTCAAATGGTC
*
15111501 ACAAAATCTTGTACACATCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
131 ACAAAATCATGTACACATCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
*** * *
15111566 ATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCAAACCGTA
196 ATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATA
* *
15111631 AAAAGTTCAGAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAACGC
261 AAAAGTTCAGAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACATGAACGC
*
15111696 TTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA-A-AAATATGAAG
326 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--TACAGAAATATGAAG
*
15111759 ATGTGCCTAAACTCACCCA
389 ATGTGCCTAAACCCACCCA
*
15111778 TTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1 TTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGA
*
15111843 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTC
66 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAAACTTTTTTCAAATGGTC
* *
15111908 ACAAAATCATGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCGAACAAAAATACAAGG
131 ACAAAATCATGTACACATCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
* *
15111972 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAATCCCAAACCATA
196 ATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATA
* * *
15112037 AAAAGTTTCA-AAAATCATGAAAAATAGAAAATGAGTCTTCTTGCCATGAAACTTCACATGAAGG
261 AAAAG-TTCAGAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACATGAACG
15112101 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGA
325 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGA
15112166 TGTGCCTAAACCCACC
390 TGTGCCTAAACCCACC
15112182 TACCACCCTA
Statistics
Matches: 379, Mismatches: 22, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
404 2 0.01
405 1 0.00
406 214 0.56
407 162 0.43
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (407 bp):
TTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAAACTTTTTTCAAATGGTC
ACAAAATCATGTACACATCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
ATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATA
AAAAGTTCAGAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACATGAACGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGAT
GTGCCTAAACCCACCCA
Found at i:15112978 original size:844 final size:864
Alignment explanation
Indices: 15111778--15114046 Score: 2889
Period size: 900 Copynumber: 2.6 Consensus size: 864
15111768 AACTCACCCA
*
15111778 TTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
15111843 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTC
66 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGGGACACTTTTTTCAAATGGTC
* * *
15111908 ACAAAATCATGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCGAACAAAAATACAAGG
130 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGG
* * *
15111972 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAATCCCAAACCATA
195 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CCGAACCATA
* * *
15112037 AAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCTTCTTGCCATGAAACTTCACATGAAGGC
259 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
15112102 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGAT
324 TTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
*
15112167 GTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCATCTCTGTTGCCGACGT
388 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTGTTGCCGACGT
* * * * *
15112232 AGTGCCCG-T-CCGCCCGCTCATTTCATCGGTTGTCTTAGGCATACAGAGTTCATTCCTAGTCTA
453 AGTGCCCGCTCCCGCCCGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** ***
15112295 AGATCAGGCCAGA-CTGAGGGTTGCGACAGCAGGATTGGCAGCACGTGGAGGGGGACCC-GATCG
518 AGATCAGACCAGATC-GAGGGTTGCGACAGCAGGATCCGCAGCACACAGAGGGGGACCCAG-TCG
* * * *
15112358 ATCCCCGGCTTGCACATCCCGCTCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTT-A-G-T-GG
581 ATCCCCGGCTTGCACATCCCGCCCCTCTAGCCAACTGAGCGCCCGCACGCTCATTTCAGGATAGG
* * **
15112419 C-T-T-G-A-C-T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTG
646 CATATAGTACCATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCA
* * * * *
15112477 CGGCAGCACATGCTGGGCTCGG-GCATGTGTTGGTGCCGCATTTTTCTTTGTCGGG-G-C-ACCA
711 CGGCAACACATGCTGGGCT-GGACCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGCGTCGACCA
* *
15112538 T-C-G-CC-G-GACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATG
775 TCCGGACCTGCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGTGTCCGCACATGATG
*
15112597 TGCGATGGGTGCTGGTACTTGGCCC
840 TGCGATGGGTACTGGTACTTGGCCC
*
15112622 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGA
1 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
15112687 TTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTATGAATTTGGGACACTTTTTTCAAATGGTC
66 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-TGGGGACACTTTTTTCAAATGGTC
* ** * *
15112752 GCAAAATCTTGTACTGTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGG
130 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGG
*
15112817 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTA
195 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CGAACCATA
** * *
15112882 AAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTGGCCATGAAAACTTCATGTGAA-G
259 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGG
* * ** *
15112946 CTTAAGGACCATTTGTATGCATTT-CCAGCCATAAAAATTGGCATTGGCAGGCAG-AATATTAAG
323 CTTAAGGACCA-TTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCACACAGAAATATGAAG
* * *
15113009 ATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCATGCGCATCCGCCTCTCTGGTTG--G
386 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CATCTCT-GTTGCCG
* *
15113072 -CGTAGTGCCCGCCTACCCGGCCGCCCGCTCATTTTGTATGTTGGCTTAGGCATACGGAGTTCAT
449 ACGTAGTGCCCG-CT---C--CCGCCCGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCAT
* * *
15113136 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGTAGGATCCGCAGCACACAGAGGGGGA
508 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCCGCAGCACACAGAGGGGGA
* * *
15113201 CCCAGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAATTGAGCGCCCGCACGCTCATTTC
573 CCCAGTCGATCCCCGGCTTGCACATCCCGCCCCTCTAGCCAACTGAGCGCCCGCACGCTCATTTC
15113266 ATGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
638 A---G--GA--TAGGCAT--ATAG-T-A---CCA-TCTAAGCATACGGAGTTCATTCCCAGTCTA
*
15113331 AGATCGGACCAGACCGAGGGTCACGGCAACACATGCTGGGCTGGACCATGTGCTGGTGCCGCATT
688 AGATCAGACCAGACCGAGGGTCACGGCAACACATGCTGGGCTGGACCATGTGCTGGTGCCGCATT
* *
15113396 TTTCTTCGCCGGGTCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCT
753 TTTCTTCGCCGGG-------CGTC-GACCAT--CC-G-G-ACCTG--CGACGGCATTGGGGTTCC
* * *
15113461 GGCGATCGGAGGGGTCGAGGGTTGTCCGCACATGATGTGCGATGGGTACTGGTACTTGGCCC
803 GACGATCGGAGGGGCCGAGGGGTGTCCGCACATGATGTGCGATGGGTACTGGTACTTGGCCC
* *
15113523 TTATATTGGCCCGCTATCCCT-TTGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
1 TTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15113587 ATTTTACAGGTTTCCTGCCA-TAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGT
65 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAATGGGGACACTTTTTTCAAATGGT
*
15113651 CACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAG
129 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAG
* * * * *
15113716 GATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTCAAAAATCCTGAACCAC
194 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC-GAACCAT
* *
15113781 AAAGAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGG
258 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
15113846 CTTAAAGGCCCATTGTTTGAATTTACAAGCCATAAAAAAGGCATTGGCACACAGAAATATGAAGA
323 CTT-AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * * ** * *
15113911 TGTGCCTAAACCCACCTACCACCC-ATTCGATCCATGACTTACGCATCCTGTCTCTCTGGCCGAC
387 TGTGCCTAAACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATCCCATCTCTGTTGCCGAC
* * *
15113975 GTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCGAG
451 GTAGTGCCCG-CT-CCCGCCCGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
15114040 TCTAAGA
514 TCTAAGA
15114047 CTAGACTGGA
Statistics
Matches: 1222, Mismatches: 123, Indels: 106
0.84 0.08 0.07
Matches are distributed among these distances:
843 13 0.01
844 224 0.18
845 167 0.14
846 16 0.01
851 146 0.12
852 3 0.00
858 1 0.00
861 1 0.00
862 3 0.00
863 1 0.00
866 1 0.00
867 1 0.00
870 1 0.00
874 1 0.00
876 3 0.00
877 93 0.08
885 1 0.00
886 1 0.00
888 4 0.00
891 1 0.00
894 1 0.00
896 2 0.00
897 1 0.00
898 52 0.04
899 16 0.01
900 257 0.21
901 197 0.16
902 14 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (864 bp):
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCGAACCATAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTGTTGCCGACGTAGT
GCCCGCTCCCGCCCGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCAGATCGAGGGTTGCGACAGCAGGATCCGCAGCACACAGAGGGGGACCCAGTCGATCCC
CGGCTTGCACATCCCGCCCCTCTAGCCAACTGAGCGCCCGCACGCTCATTTCAGGATAGGCATAT
AGTACCATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCACGGCA
ACACATGCTGGGCTGGACCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGCGTCGACCATCCGGA
CCTGCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGTGTCCGCACATGATGTGCGAT
GGGTACTGGTACTTGGCCC
Found at i:15113310 original size:26 final size:26
Alignment explanation
Indices: 15113280--15113332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15113270 GTTGACTTAG
*
15113280 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15113306 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15113332 G
1 G
15113333 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15114525 original size:26 final size:27
Alignment explanation
Indices: 15114467--15114525 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
15114457 AATCCTTCTG
* **
15114467 AAAAAATTTTAAAAAATCTTGAACCAT
1 AAAAAATTTTAAAAAATCATGAAAAAT
*
15114494 AAAAAA-TTTCAAAAATCATGAAAAAT
1 AAAAAATTTTAAAAAATCATGAAAAAT
*
15114520 AGAAAA
1 AAAAAA
15114526 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.63, C:0.08, G:0.05, T:0.24
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCATGAAAAAT
Found at i:15114787 original size:713 final size:711
Alignment explanation
Indices: 15113306--15114787 Score: 2189
Period size: 713 Copynumber: 2.1 Consensus size: 711
15113296 CCCAGTCTAA
* * * *
15113306 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTCACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGA-CGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
15113371 CTGGACCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGTCACCATCGTCGGAGCATCGCCGGAGA
64 CTCGACCATGTGCCGGTGCCACATTTCTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
15113436 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGAGGGGTCGAGGGTTGTCCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGTGTCCGCACATGATGTGC
* * *
15113501 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTTTGCAAACCTCGAGAACTCACA
194 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTATGCAAACCTCAAGAACTCACA
*
15113566 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCATAGCCATTAAAGTGTCTGGAATGG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCATAGCCATTAAAGTGTCTGAAATGG
* * * * *
15113631 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTAAATTTTTTTATG
* *
15113696 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
389 CATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAAT
* * *
15113761 TTTCAAAAATCCTGAACCACAAAGAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGC
454 TTTAAAAAATCCTGAACCACAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGC
* * * *
15113826 CATGAAACTTCACGTGAAGGCTTAAAGGCCCATTGTTTGAATTTACAAGCCATAAAAAAGGCATT
519 CATGAAACTTCACATGAAAGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
*
15113891 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCATTCGATCCATGACTTACGCA
584 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCATTCGATCCAAGACTTACGCA
* * *
15113956 TCCTGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAG
649 TCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * * *
15114019 GCATACGGAGTTCATTCCGAGTCTAAGACTAGACTGGACCACGGCTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-GGACGA-GGGTTACGGCAGCACATGCTGGG
** * *
15114084 CTCGTGCATGTGCCGGTGCCATATTTCTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGGGA
64 CTCGACCATGTGCCGGTGCCACATTTCTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * *
15114149 ACCTGACTGGCGGCATTTGGGTTCCGACGATC-GAGGGGCCGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGTGTCCGCACATGATGTGC
*
15114213 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCAAGAACTCAC
194 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-ATGCAAACCTCAAGAACTCAC
*
15114277 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCA-TAGCCATTAAAGTGTCTGAAAT
15114342 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTAAATTTTTTTA
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTAAATTTTTTTA
** * *
15114407 TGCATGCCAAAAAAAATACAAGGATCATGTCTTCCAAGTTTGGGGACAAAAATCCTTCTGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAA
* * *
15114472 ATTTTAAAAAATCTTGAACCATAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCTGAACCACAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTT
* *
15114537 GCCATGAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACATGAAAGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
*** * **
15114602 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCAAGGCTTGT
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAT-TCGATCCAAGACTTAC
* * *
15114666 GCAT-CTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTT
646 GCATCCT-GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
15114730 AG
710 AG
* *
15114732 GCATACGGAGATCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTATGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGA-CGAGGGTTACGGCAGCA
15114788 GGATCGACAG
Statistics
Matches: 683, Mismatches: 78, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
712 133 0.19
713 547 0.80
714 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGACGAGGGTTACGGCAGCACATGCTGGGCT
CGACCATGTGCCGGTGCCACATTTCTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGTGTCCGCACATGATGTGCGA
TGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTATGCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCATAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTAAATTTTTTTATGCA
TGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTT
TAAAAAATCCTGAACCACAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGCCA
TGAAACTTCACATGAAAGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCATTCGATCCAAGACTTACGCATC
CTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:15114928 original size:26 final size:26
Alignment explanation
Indices: 15114891--15114943 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15114881 GTTGACTTAG
*
15114891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15114917 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15114943 G
1 G
15114944 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15115826 original size:26 final size:26
Alignment explanation
Indices: 15115796--15115848 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15115786 GTTGACCTAG
15115796 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15115822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15115848 G
1 G
15115849 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15116515 original size:894 final size:893
Alignment explanation
Indices: 15114019--15117461 Score: 4525
Period size: 901 Copynumber: 3.9 Consensus size: 893
15114009 GTTGGCTTAG
* ** * * * *
15114019 GCATACGGAGTTCATTCCGAGTCTAAGA-CTAGACTGGACC-ACGGCTTACGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGA-GGGTTGCCGCAGCACATACTG
** * ** * * * * *
15114082 GGCTCGTGCATGTGCCGGTGCCATATTTCTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGG
64 GGCTCGAACATGTGCTGGTGCCGCATTTTTCTCCGTCGGGGCACCATCACCGGAGCATCACCGGA
* *
15114147 GAACCTGACTGGCGGCATTTGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGAT------G-CGGGGGGTGTGCGCACATGATGTG
*
15114212 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
187 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
15114277 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** * * *
15114342 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTAAATTTTTTTA
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATCTTTTTG
* * * * *
15114407 TGCATGCCAAAAAAAATACAAGGATCATGTCTTCCAAGTTTGGGGACAAAAATCCTTCTGAAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
** * * * *
15114472 ATTTTAAAAAATCTTGAACCATAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
447 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTCAAAAATAGAAAACGAGTCGTCTT
* *
15114537 GCCATGAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * ***
15114602 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGTG
577 TTGGCACGTAGAAAGATGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTAACG
* * * *
15114667 CAT-CTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG---TCCGCTCATTTCGTCGGTTGGC
642 CATCCT-GTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGC
* * * * * *
15114728 TTAGGCATACGGAGATCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTATGGCAGCAGGATC
706 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATT
* * * * *** * * * * * *
15114793 GACAGTATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCGCTTTGGCTGGTTGA
771 GGCAGCACGCAGAGGGGAACCCAACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGA
** *
15114858 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GTGCCCGCACGCTCATTTCGTGGGTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15114917 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGAT-ACGACAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCCG-CAGCACATACTGG
** * * * ** *
15114981 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGTGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGAACATGTGCTGGTGCCGCATTTTTCTCCGTCGGGGCACCATCACCGGAGCATCACCGGAG
* * * *
15115046 AACCTGACCGACGGCATTAGGGTTTCGAGGATCGGAGGGCCCAGGGGGGTTGTGCGCACATGATG
130 AACCTGACCGGCGGCATT-GGGGTTC--CGA-C-GA-TG--C-GGGGGG-TGTGCGCACATGATG
* * *
15115111 TGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACATCAAGAACTC
185 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
15115176 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15115241 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATGTTTT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATCTTTT
* * * *
15115306 TGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAGGTTTGGGGCCAAAAATCTTTTCGAAA
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* *
15115371 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAACAATCTTCAAAAATAGAAAACGAGTCCTC
445 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTCAAAAATAGAAAACGAGTCGTC
*
15115436 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15115501 CATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTAG
575 CATTGGCACGTAGAAAGATGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTAA
* * *
15115566 CGCATCCTGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGCCCGCGTGCTCGTTTTGTCGGTTG
640 CGCATCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTG
* * *
15115631 GCTTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGGA
704 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGA
*
15115696 TTGGCAGCACGCAGAGGGGAACCCAACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCT
769 TTGGCAGCACGCAGAGGGGAACCCAACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
* *
15115761 GAGTGCCCGCGCGCTCATTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GAGTGCCCGCACGCTCATTTCGTGGGTTGA-CTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15115822 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCCGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCCGCAGCACATACTGGG
*
15115887 CTC-AGACATGTGCTGGTGTCGCATTTTTCTCCGTCGGGGCACCATCACCGGAGCATCACCGGAG
66 CTCGA-ACATGTGCTGGTGCCGCATTTTTCTCCGTCGGGGCACCATCACCGGAGCATCACCGGAG
* *
15115951 AACCTGACCGGCGGCATTGGGGTTCCGACGAT-TGGGGGGTGTGCGCACATGATGTGCGATGGGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATGCGGGGGGTGTGCGCACATGATGTGCAATGGGT
** *
15116015 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* *
15116080 AATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT-GGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
15116144 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGTTGAATCTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATCTTTTTGTGCATGCC
* * * *
15116209 AACAAAAATGCAAGGATCACGTCTACCATGTTTGGGGTCAAAAATCCTTCCGAAAAAATTTTCAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
*
15116274 AAATCCCGAACCGTAAAAAGTTTCAAAAATCTTCAAAAATAGAAAACGAGTCGTCTTGCCATTAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCTTCAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
15116339 ACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTCCAAGCCATAAAAAATGGCATTGGCAC
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCAC
* * *
15116404 GTAGAAAGAAGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGACTAACGCATCCTA
584 GTAGAAAGATGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTAACGCATCCTG
* *
15116469 TCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCCGCACGCTCGTTTCGTCGATTGGCTTAGGCA
649 TCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
15116534 TACAGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTCGCAGCA
713 TACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATTGGCAGCA
* * * *
15116599 CGTAGAGGGGAACCCAACCGATCCCCGACTTGTGCATCCCGCCCCTCTAGCCGACTGAGTGCCCG
778 CGCAGAGGGGAACCCAACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCG
*
15116664 AACGCTCATTTCGTGGG-T---T----A-AC------C--T---AG-----
843 CACGCTCATTTCGTGGGTTGACTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15116690 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCCGCAGCACATACTGGG
* *
15116755 CTCGAACATGTGCTGGTGCCACATTTTTCTCCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGAACATGTGCTGGTGCCGCATTTTTCTCCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* * *
15116820 ACCTGATCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGTACATGATGTTC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGAT-------G-CGGGGGGTGTGCGCACATGATGTGC
* **
15116885 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTGGAGAACTCACA
188 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
15116950 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTACCCACTAAAGTGTCTGAAATG
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15117015 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATCTTTTTGT
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATCTTTTTGT
* *
15117080 GCATGCCAACAAAAGTGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
383 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * * ** * * *
15117145 TTTTCAAAAATCCCAAACC--ACAGAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
448 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTCAAAAATAGAAAACGAGTCGTCTTG
* *
15117208 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAAAGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
15117273 TGGCATGCAGAAATG-TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
578 TGGCACGTAGAAA-GATGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTAACG
* * * * * * *
15117337 CATCCCGTCTCTCTAG-CAGACGTAGTGCCTGGCCGCCCGCCCGCCTACTCGTTTCGTTGGTTGG
642 CATCCTGTCTCTCTGGTC-GGCGTAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGG
* * * *
15117401 CTTAGGCATACAGAGTTCATTCCCAGTCTATGCTCGGATAGGACCAAGGGTTACGGCAGCA
705 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCA
15117462 CATACTGGGC
Statistics
Matches: 2277, Mismatches: 233, Indels: 93
0.87 0.09 0.04
Matches are distributed among these distances:
868 151 0.07
869 1 0.00
873 2 0.00
874 2 0.00
875 168 0.07
876 89 0.04
877 142 0.06
878 144 0.06
884 2 0.00
885 1 0.00
889 1 0.00
893 236 0.10
894 402 0.18
895 6 0.00
897 1 0.00
898 120 0.05
899 9 0.00
900 8 0.00
901 469 0.21
902 5 0.00
903 2 0.00
904 7 0.00
905 306 0.13
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCCGCAGCACATACTGGG
CTCGAACATGTGCTGGTGCCGCATTTTTCTCCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATGCGGGGGGTGTGCGCACATGATGTGCAATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATCTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCTTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
AGAAAGATGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTAACGCATCCTGTC
TCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATTGGCAGCACGC
AGAGGGGAACCCAACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCAC
GCTCATTTCGTGGGTTGACTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15118301 original size:26 final size:26
Alignment explanation
Indices: 15118271--15118323 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15118261 GTTGACTTAG
15118271 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15118297 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15118323 G
1 G
15118324 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:15119667 original size:710 final size:711
Alignment explanation
Indices: 15118297--15119779 Score: 2178
Period size: 710 Copynumber: 2.1 Consensus size: 711
15118287 CCCAGTCTAA
*
15118297 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATACTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATACTGGG
* *
15118362 CTCGGACATGTGCTGGTGCCGCATTTTTCTCCACCGGGGCACCATCACTGGAGCATCGTCGGAGA
65 CTCGGACATGTGCTGGTACCACATTTTTCTCCACCGGGGCACCAT-AC--GAGCA-CGTC-GAGA
*
15118427 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGCGCACATGATGTGCGA
125 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGCGCACATGATGCGCGA
**
15118492 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
190 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
15118557 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAG
* *
15118622 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGC
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGAGC
**
15118687 ATGCCAAAAAAAAGACTAGGATCACGTCTACCAAGTTTAGGGGCCAAAAATCCTTCCAAAAAAAT
385 ATGCCAAAAAAAAGAAAAGGATCACGTCTACCAAGTTTAGGGGCCAAAAATCCTTCCAAAAAAAT
* * * *
15118752 TTTCAAAAATCCTGAACCACGAAGAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
450 TTTCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
15118817 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
* *
15118882 GGCATGCAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTACGCA
580 GGCATGCAGAAATACGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
* * **
15118947 TCCCGTCTCTCTGGCCGACGTAGCGCCCACCCGCCCGCCCGCCTGCCCGCTCATTTTTTCCATTG
645 TCCCGTCTCTCTGGCCGACGTAGCG----CCCGCCCGCCCGCCCGCACGCTCATTTCGTCCATTG
15119012 GCTTAG
706 GCTTAG
* * *
15119018 GCATATGGAGTTCATTCCCAGTCTATGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATACTGGG
*
15119083 CTCGGGCATGTGCTGGTACCACATTTTTCTTCC-CCGGGGCACCAT-C-A-C-CG-C-AGAACCT
65 CTCGGACATGTGCTGGTACCACATTTTTC-TCCACCGGGGCACCATACGAGCACGTCGAGAACCT
* * * *
15119141 GACTGGCGGCATTGGGGTTCC-AGCTATCGGGGGGCCAGGGGGTGTGCGCACATGATGCGCGATT
129 GACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCC-GGGGGGGTGCGCACATGATGCGCGATG
15119205 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* *
15119270 CTTAAAGAGCATTTGAGATTTTGCAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGA
* * * *
15119335 TATTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCCAGTTTTTAGCTGAATTGTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGAGCAT
* * ** *
15119400 G-CAAACAAAAATAAAAGGATCACGTCTACCCAGTTT-GGGGCCAAAAATCCTTTGAAAAAATTT
387 GCCAAA-AAAAAGAAAAGGATCACGTCTACCAAGTTTAGGGGCCAAAAATCCTTCCAAAAAAATT
* ** **
15119463 TTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
451 TTCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
15119528 ATGAAACTTTACGTGAAGGCTTAAGAGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATT
516 ATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
* * * * *
15119592 GGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACTCTATTGATCCACGGTTTGCGCA
580 GGCATGCAGAAATACGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
* * * **
15119657 TCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTT
645 TCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCCCGCACGCTCATTTCGTCCATTGGCTT
15119722 AG
710 AG
** * * *
15119724 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTGCAGCAGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCA
15119780 GGATTGGCAG
Statistics
Matches: 691, Mismatches: 65, Indels: 27
0.88 0.08 0.03
Matches are distributed among these distances:
705 1 0.00
706 82 0.12
709 1 0.00
710 263 0.38
711 237 0.34
712 1 0.00
713 2 0.00
715 1 0.00
716 1 0.00
719 1 0.00
721 98 0.14
722 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (711 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATACTGGGC
TCGGACATGTGCTGGTACCACATTTTTCTCCACCGGGGCACCATACGAGCACGTCGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGCGCACATGATGCGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGAGCATGCCA
AAAAAAAGAAAAGGATCACGTCTACCAAGTTTAGGGGCCAAAAATCCTTCCAAAAAAATTTTCAA
AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATG
CAGAAATACGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
CTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCCCGCACGCTCATTTCGTCCATTGGCTTAG
Found at i:15121668 original size:720 final size:713
Alignment explanation
Indices: 15120293--15121752 Score: 2141
Period size: 720 Copynumber: 2.0 Consensus size: 713
15120283 TTAAGCGTAT
* *
15120293 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCACATGCTAGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGG
* * * * *
15120358 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAAAGAACCTGA
66 CAAGTGCTGGTGCCCTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCAAAGAACCTGA
* *
15120423 CCGACGGCATTTGGGTTCCGACGATCGGGACCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 CCGACGGCAATGGGGTTCCGACGATCGGGACCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
**
15120488 GGTGGTACTTGGCACTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
196 ACTGGTACTTGGCACTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* * *
15120553 AAGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGACAC
261 AAAGAGCATTTGAGATATTACAAGTTTGCTACCAGTAGCCATTAAAGAGTCTGAAATGGGGACAC
15120618 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGAATGCC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGAATGCC
* * * * * *
15120683 AACAAAAATATAATGATAACGTCTACCAAGTTTGGGGCTAAAAATCCTTCCGAAAAAATTTTAAA
391 AACAAAAATAAAAAGATAACATCTACCAAGTTTGGGGCCAAAAATCCCTCCAAAAAAATTTTAAA
* * * *
15120748 AAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAA
456 AAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGCCGTCTTGCCATGAA
** *
15120813 ACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCAAAAATTTGGCATTGGAATG
521 ACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCAAAAATATGGCATTGGAATG
*
15120878 CATAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
586 CAGAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
* * *
15120943 CTCTCTGGTC-GACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
651 CTCTCTGGCCAG-CGTAGTGCCCG-CCG---ACCCGCCCGCTCGTTACGTCGATTGGCTTAGGCA
15121007 TAC
711 TAC
* *
15121010 GGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTTTGGCAGCACATGCTGGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGG
**
15121074 GCAAGTGCTGGTGCCACT-TTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCT
65 GCAAGTGCTGGTGCC-CTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCAAAGAACCT
* * * *
15121138 GACC-A-GTTGCAATGGGGTTCCGGCGATTGGG-CGGGCCGGTGGGGTGTGCGCACTTGATGTGC
129 GACCGACG--GCAATGGGGTTCCGACGATCGGGAC---CCGGGGGGGTGTGCGCACATGATGTGC
* * **
15121200 GATGGGTACTGGTA-TGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
189 GATGGGTACTGGTACT-TGGCACTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCAC
* *
15121264 ACCTCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTACCAGTAGCCATTAAAGTA-TCTGAAA
253 ACCCCCTTAAAGAGCATTTGAGATATTACAAGTTTGCTACCAGTAGCCATTAAAG-AGTCTGAAA
15121328 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTT
* * *
15121393 TGTGCATGCCAACAAAAATAAAAAGATCACATCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAA
381 TGTGAATGCCAACAAAAATAAAAAGATAACATCTACCAAGTTTGGGGCCAAAAATCCCTCCAAAA
** * *
15121458 AAATTTTAAAAAAT-CTCGAACTGCAAAACA-TTTGGAAAATTGTGAAAAATAAAAAATGAGCCG
446 AAATTTTAAAAAATCCT-GAACTGCAAAA-AGTTTCAAAAATCGTGAAAAATAAAAAACGAGCCG
*
15121521 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACATGCCATAAAA-A
509 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCA-AAAATA
* * * *
15121585 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATTGC
573 TGGCATTGGAATGCAGAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGC
* *
15121650 TTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCGGCCCGCCCGCTCGTTACGTCGATTGG
638 TTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCGACCCGCCCGCTCGTTACGTCGATTGG
15121715 CTTAGGCATAC
703 CTTAGGCATAC
*
15121726 GGAGTTCATTCCCAATCTAAGATCAGA
1 GGAGTTCATTCCCAGTCTAAGATCAGA
15121753 GTGGACTGAG
Statistics
Matches: 668, Mismatches: 60, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
715 1 0.00
716 61 0.09
717 137 0.21
718 2 0.00
719 200 0.30
720 261 0.39
721 6 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGG
CAAGTGCTGGTGCCCTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCAAAGAACCTGA
CCGACGGCAATGGGGTTCCGACGATCGGGACCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
ACTGGTACTTGGCACTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATATTACAAGTTTGCTACCAGTAGCCATTAAAGAGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGAATGCC
AACAAAAATAAAAAGATAACATCTACCAAGTTTGGGGCCAAAAATCCCTCCAAAAAAATTTTAAA
AAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGCCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCAAAAATATGGCATTGGAATG
CAGAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
CTCTCTGGCCAGCGTAGTGCCCGCCGACCCGCCCGCTCGTTACGTCGATTGGCTTAGGCATAC
Found at i:15123638 original size:26 final size:26
Alignment explanation
Indices: 15123608--15123658 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15123598 GTTGACTTAG
15123608 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
15123634 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
15123659 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15126162 original size:26 final size:26
Alignment explanation
Indices: 15126132--15126184 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15126122 GTTGACTTAG
*
15126132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15126158 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15126184 G
1 G
15126185 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15127443 original size:871 final size:867
Alignment explanation
Indices: 15125385--15130055 Score: 5281
Period size: 891 Copynumber: 5.3 Consensus size: 867
15125375 ACCATTGCCA
* * * * *
15125385 GAGAACATTACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGCATATGAT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGG--TGCGCACATGAT
* * * *
15125450 GTGCCATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACT
63 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15125515 CACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGGTGCCAATAGCCATTAAAGTGTCTGA
128 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15125580 AATGGGGACAATTTTTTCTAATGGTCACAAAATCTTGTAC-CGTTCGAGTTTTTAGCTGAATTTT
193 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTT
* * * *
15125644 TTTATGCATGCCAAAAAATATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
257 TTTGTGCATGCCAAAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* *
15125709 AAAAATTTTAGAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
321 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
15125774 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGATTTTACATGTCATAAAAAT
386 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
15125839 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
451 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCT
* ** * * * * * *
15125904 TGCGTATCCCGTTTCTCTAGG-CGACATAGTGCCCGCTCGCCCTCTCGCTCGTTTCATCGGTTGG
516 TGCGCAT-CCGCCTCTCT-GGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* ** ** * * *
15125968 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGCCAACAGGAT
579 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTACGACAGCAAGAT
* * * * * * *
15126033 TGGTAACACGCAGAGGGGGACCC-GATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTTGGCT
644 CGGCAGCACGCAAAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCT
* *
15126097 GAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
708 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC----C--
* * *
15126162 ACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCAAAGGTTGCGATAGCACATGCTGGGCTCG
767 A---AG----------AT-T-GGATCGGACC-G----AGGGTTGCGGTAGCACATGCTGGGCTC-
* * * * *
15126227 GGCATGTGCTGGTGCCATATTTCTCTTCGTCGAGGCACCATC-TCCGAGGCATC-GCTG
811 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGA-GCATCATC-G
* * * * * * *
15126284 GAGAACCTGACCGACGGCATTAGGGTTCCGGCAATTC--GGGGGC----TGTGCACACATTATCT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGGCGGGGGGTGCGCACATGATGT
** ** * * *
15126343 GCGATGCATGCTGGTACTTGGCCCTTATATTGGCCCTGTATCCCCCATCAAACCTCCAGAACACA
65 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15126408 CACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTCCTGCCAGTAGCCATTCAAGTGTCTGAAA
130 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15126473 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
195 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15126538 TTGCATGCCAAAAAAAGTGCAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCCAAAAA
260 GTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
15126603 AAGTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
324 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15126668 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
389 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
15126733 ATTGGCACATAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCAATGTCTTGC
454 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGC
* * * * *
15126798 ACATCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
519 GCATCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
* * * *
15126863 GTATGCAGAGTTAATTCCCAGTCTAAGATCAGA-TCAGACTGAGGGTTACGACAGCAGGATCGGC
584 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-AGACTGAGGGTTACGACAGCAAGATCGGC
* *
15126927 AGCACGCAAAGGGGGACCC-GATCGATCCCCGGCGTGCGCATCCCGCCCCTCTGGTCGGCTGAGC
648 AGCACGCAAAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGC
* * *
15126991 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCCAAGATTGGAT
712 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGATTGGAT
* *
15127056 CGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCAGGCATGTGCTGGCGCCGTATTTTTCTTCGT
777 CGGACCGAGGGTTGCGGTAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGT
* *
15127121 CGGGGCACCAACGTCGAAGCATCATCG
841 CGGGGCACCATCGTCGGAGCATCATCG
* * **
15127148 GAGAACTTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGTCGAGGGGGTGCGCACATGACA
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CG-GGGGGTGCGCACATGATG
* * * *
15127213 TGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAAGTC
64 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
15127278 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
129 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15127343 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
194 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15127408 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCATGTTTGGGG-CTAAACTCCTTCCGAAA
259 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
15127472 AAATTTTAAAAAATCCCGAACC-------G------------TGAAAAATAGAAAACGAGTCGTC
323 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
** * *
15127518 CCGCCATGAAACTTCATGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
388 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15127583 CATTGGCACGCAAAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
453 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTG
* * * * *
15127648 CGCATCCTGCCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCACTCGATTCATCAGTTGGCTT
518 CGCATCC-GCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
* * * **
15127713 AGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGAC-AGGACCGAGGGTTGCGGTAGCAAGATC
582 AGGCATACAGAGTTCATTCCC-AGTCTAAGATCAGACTA-GACTGAGGGTTACGACAGCAAGATC
* * *
15127776 GGTAGCACGCAGAA-GGGGACCCAGTCGAT-CCC--C--G-GCAT---GCGCCTCTGG-CTGGCT
645 GGCAGCACGCA-AAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-GGCT
* * *
15127830 GAGTGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCAT
708 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC---C--AG--T
* * * *
15127895 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTGTGGTTGCACATGCTGGGCTCG
765 CCA-AG---ATT----G-----GATC-G----GACCGAGGGTTGCGGTAGCACATGCTGGGCTCG
* * **
15127960 AGCATGTGCTGGTGCC-TCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGGCG
812 -GCATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * *
15128017 GACAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGCGCACAAATGGT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGTGCGCAC--ATGAT
* * * * *
15128082 TTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCGCTATCCCTCACCAAACCTCGAAAACT
63 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
15128147 CACACCCCCTTAAAGGGCATTTAAGATTGTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGA
128 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
15128212 AATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTT
193 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** *
15128277 TTGTGCATGCAAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAA
258 TTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
15128342 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
322 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
15128407 CTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TGTTATGAATTTACAAGCCATAAAAAT
387 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCATAAAAAT
* * ** *
15128471 GGCATTGGCACATAGAAATATGAAGCTGTGCCTAAACCCACCTGTCACCCTATCGATCCACGGCT
451 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCT
* * * * * * *
15128536 TGCGCAACTCGCCTGTCTGGCCGGCATAGTGCTCGCCCGCCCGCCCACCCACTCGTTTCGTTGAT
516 TGCGCATC-CGCCTCTCTGGCCGACGTA--G-T-GCCCGCCCGCCCGCCCACTCGTTTCGTCGGT
* * * * * *
15128601 TAGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTATGGCAGCAG
576 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTACGACAGCAA
* * * * * *
15128666 GATTC-GCAGCACACAGAGGGGGATCC-GACCGATCCCCGGCTTGCGTATCCCGCCCTTCTGGCC
641 GA-TCGGCAGCACGCAAAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC
* * **
15128729 AGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGA
704 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAA
* * *
15128794 GATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGCATGTGCTGGTGCCGTATTTT
769 GATTGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGTATTTT
* *
15128859 TCTTCCTCGGGGCACCATCGTCGGAGCATCGTCG
834 TCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * * * * * *
15128893 AAGAACCTGACCGACGGCAATGTGGTTCCGGCAATAGGGGGCCGG-GGGGTGTGCGCACATGATG
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG--GGCGGGGGGTGCGCACATGATG
*
15128957 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
64 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15129022 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
129 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
15129087 ATGGGGACACTTTTTTAAAATGGTTACAAAATCTTGTTCACTTCGAGTTTTTGGCTGAATTTCTT
194 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15129152 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCATTCCGAAA
259 TGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
** *
15129217 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
323 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
15129282 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
388 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
15129347 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACAATATCGATCCACAGCTTG
453 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTG
* * * *
15129412 CGCATCCCGTCTCTCTGGCTGACGTAGT----GCCCTCCCG----CTTGTTTCGTCGGTTGGCTT
518 CGCAT-CCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
* * ** * *
15129469 AGGCATACGGAGTTCACTCCCAGTCTAAGATTGGACTGGA-TCAAGGGTTACGGA-AGCAAGATC
582 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACT-GAGGGTTAC-GACAGCAAGATC
* * * * * * * *
15129532 GACAGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGTGCATCCTGCCTCTCTGGTCGGCTAA
645 GGCAGCACGCAAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGA
*
15129597 GCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
710 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC----C--A-
* *
15129662 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCCGCAGCACATGCTGGGCTCGAG
768 --AG---ATT----G-----GAT-----CGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCG-G
** * *
15129727 CATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCGCCATCGCCGGAGCATCATCAG
813 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-G
* * * * * * * * *
15129783 G-GAACCTAATCGTCGACGTTAGGGTTTCGATGATCGGGGGGGCTAGGGGGTGTGAGCACATGAT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC--GGGGG-GTGCGCACATGAT
* ***
15129847 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATGATTCATCAAACCTCGAGAACT
63 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15129912 CACATCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
128 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15129977 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
193 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTT
15130042 TTTGTGCATGCCAA
257 TTTGTGCATGCCAA
15130056 CAAATGGAAC
Statistics
Matches: 3238, Mismatches: 397, Indels: 282
0.83 0.10 0.07
Matches are distributed among these distances:
842 1 0.00
843 58 0.02
844 2 0.00
846 4 0.00
847 2 0.00
849 3 0.00
851 152 0.05
852 122 0.04
853 4 0.00
855 3 0.00
859 1 0.00
861 3 0.00
862 167 0.05
863 5 0.00
864 100 0.03
865 10 0.00
866 8 0.00
868 15 0.00
869 127 0.04
870 259 0.08
871 267 0.08
872 6 0.00
874 437 0.13
875 5 0.00
876 95 0.03
877 30 0.01
878 4 0.00
881 2 0.00
882 4 0.00
883 3 0.00
884 1 0.00
886 1 0.00
887 3 0.00
888 31 0.01
889 80 0.02
890 375 0.12
891 613 0.19
892 17 0.01
893 5 0.00
894 101 0.03
895 6 0.00
897 4 0.00
898 5 0.00
899 31 0.01
900 5 0.00
902 2 0.00
903 58 0.02
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (867 bp):
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGC
ATCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTACGACAGCAAGATCGGCAGC
ACGCAAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGATTGGATCGGA
CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCATCG
Found at i:15127901 original size:26 final size:26
Alignment explanation
Indices: 15127865--15127917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15127855 GTTGACTTAG
* *
15127865 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15127891 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15127917 G
1 G
15127918 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15129131 original size:874 final size:862
Alignment explanation
Indices: 15127495--15130059 Score: 2809
Period size: 874 Copynumber: 2.9 Consensus size: 862
15127485 TCCCGAACCG
** * *
15127495 TGAAAAATAGAAAACGAGTCGTCCCGCCATGAAACTTCATGTGAGGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
15127560 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATCTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTG
** * * * * * *
15127625 CCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGC
131 CCACAATATCGATCCACAGCTTGCGCAACCCGCCTCTCTGGCCGACATAGT----GCCCGCCCG-
* * * * * *
15127690 CCACTCGATTCATC-AGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGACAGGA
191 ---CTCGTTTCGTCGA-TTAGCTTAGGCATACAGAGTTCACTCCC-AGTCTAAGATCAGACTGGA
* * * * ** * * *
15127753 CCGAGGGTTGCGGTAGCAAGATCGGTAGCACGCAGAAGGGGACCCAGTCGAT-CCC--C--G-GC
251 TCAAGGGTTACGGAAGCAAGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGC
* ** * * * * *
15127812 AT-GCG-C-CTCTGGCTGGCTGAGTGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGA
316 ATCCCGCCTCTCTGGCCAGCTAAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
15127874 GTTCATTCCCATTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTG
381 GTTCATT-CC---C--AG--T-CTGAG---A-T--C-G-----GATCAGACC-GA----GGGTTG
* * * *
15127939 TGGTTGCACATGCTGGGCTCGAGCATGTGCTGGTGCC-TCATTTTTCTTCGTCAGGGCACCATCG
420 CGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGT-ATTTTTCTTCCTCGGGGCACCATCG
* * *
15128003 CCGGAGCATCGGCGGACAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGG
484 CCGGAGCATCGTCGAAGAACCTGACCGACGGCATT-GGGTTCCGATGATC-GGGGGGCCGGGGGG
* * * * * * * *
15128068 TGCGCACAAATGGTTTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCGCTATCCCTCACC
547 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * * *
15128133 AAACCTCGAAAACTCACACCCCCTTAAAGGGCATTTAAGATTGTATAGGTTTGTTGCCAGTAGCC
612 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
15128198 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTT
677 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
**
15128263 TTAGCTAAATGTTTTTGTGCATGCAAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCA
742 TTAGCTAAAT-TTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*
15128328 AAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
806 AAACACATTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
*
15128385 TGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TGTTA
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TA
* *
15128449 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGCTGTGCCTAAACCCACCT
65 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * * * *
15128514 GTCACCCTATCGATCCACGGCTTGCGCAACTCGCCTGTCTGGCCGGCATAGTGCTCGCCCGCCCG
130 GCCACAATATCGATCCACAGCTTGCGCAACCCGCCTCTCTGGCCGACATA--G-T-GCCCGCCCG
* * *
15128579 CCCACCCACTCGTTTCGTTGATTAGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCAGACT
191 --------CTCGTTTCGTCGATTAGCTTAGGCATACAGAGTTCACTCCCAGTCTAAGATCAGACT
* * * * *
15128644 GGA-CTGAGGGTTATGGCAGCAGGATTCG-CAGCACACAGAGGGGGATCC-GACCGATCCCCGGC
248 GGATC-AAGGGTTACGGAAGCAAGA-TCGACAGCACACAGAGGGGGACCCAG-CCGATCCCCGGC
* *
15128706 TTGCGTATCCCGCC-CTTCTGGCCAGCTGAA-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
310 TTGCGCATCCCGCCTC-TCTGGCCAGCT-AAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGG
15128769 CATACGGAGTTCATTCCCAGTCTGAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGC
373 CATACGGAGTTCATTCCCAGTCTGAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGC
*
15128834 TC-AGCATGTGCTGGTGCCGTATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGTCGAAGAA
438 TCGAGCATGTGCTGGTGCCGTATTTTTCTTCCTCGGGGCACCATCGCCGGAGCATCGTCGAAGAA
* *** * *
15128898 CCTGACCGACGGCAATGTGGTTCCGGCAAT-AGGGGGCCGGGGGGTGTGCGCACATGATGTGTGA
503 CCTGACCGACGGCATTG-GGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
15128962 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
567 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
15129027 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
632 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
15129092 GACACTTTTTTAAAATGGTTACAAAATCTTGTTCACTTCGAGTTTTTGGCTGAATTTCTTTGTGC
697 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT-TTTGTGC
* * *
15129157 ATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCATTCCGAAAAAAT
761 ATG-CAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACATTCCAAAAAAAT
** *
15129221 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCG
825 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
15129259 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
15129324 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTG
66 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTG
* * * * * *
15129389 CCACAATATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCTCCCGCTTGT
131 CCACAATATCGATCCACAGCTTGCGCAACCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCTCGT
* * * **
15129454 TTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGATTGGACTGGATCAAGGGTTA
196 TTCGTCGATTAGCTTAGGCATACAGAGTTCACTCCCAGTCTAAGATCAGACTGGATCAAGGGTTA
** * * *
15129519 CGGAAGCAAGATCGACAGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGTGCATCCTGCCTC
261 CGGAAGCAAGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCTC
* *
15129584 TCTGGTCGGCTAAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
326 TCTGGCCAGCTAAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
15129649 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCCGCAGCACA
391 AG--T---C---T-GAG---A-T--C-G-----GATC--A---GACCGAGGGTTGCGGTAGCACA
*
15129714 TGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCAC-CGGGGCGCCATCGCCGGAGCATC
430 TGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTC-CTCGGGGCACCATCGCCGGAGCATC
* * * * * * * * ** *
15129778 ATC-AGGGAACCTAATCGTCGACGTTAGGGTTTCGATGATCGGGGGGGCTAGGGGGTGTGAGCAC
494 GTCGA-AGAACCTGACCGACGGCATT-GGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGCGCAC
* ***
15129842 ATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATGATTCATCAAACCTCGA
556 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
15129907 GAACTCACATCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTG
621 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
15129972 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAT
686 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-A-
** *
15130037 TTTTTTTTGTGCATGCCAACAAA
749 AATTTTTTGTGCATGCAAACAAA
15130060 TGGAACTGTA
Statistics
Matches: 1444, Mismatches: 163, Indels: 134
0.83 0.09 0.08
Matches are distributed among these distances:
861 5 0.00
862 166 0.11
863 3 0.00
864 1 0.00
867 1 0.00
870 9 0.01
871 4 0.00
872 1 0.00
873 2 0.00
874 454 0.31
875 8 0.01
876 78 0.05
877 26 0.02
878 1 0.00
881 2 0.00
882 9 0.01
883 4 0.00
885 1 0.00
887 1 0.00
888 32 0.02
889 74 0.05
890 171 0.12
891 201 0.14
892 14 0.01
893 7 0.00
894 92 0.06
895 8 0.01
897 3 0.00
899 2 0.00
900 3 0.00
901 2 0.00
902 4 0.00
903 54 0.04
904 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (862 bp):
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTG
CCACAATATCGATCCACAGCTTGCGCAACCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCTCGT
TTCGTCGATTAGCTTAGGCATACAGAGTTCACTCCCAGTCTAAGATCAGACTGGATCAAGGGTTA
CGGAAGCAAGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCTC
TCTGGCCAGCTAAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTGAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGC
CGTATTTTTCTTCCTCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGG
GTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCAAACAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACACATTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
AAAAGTTTCAAAAATCA
Found at i:15129666 original size:26 final size:26
Alignment explanation
Indices: 15129630--15129682 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15129620 GTTGACTTAG
15129630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15129656 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15129682 G
1 G
15129683 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15132462 original size:857 final size:865
Alignment explanation
Indices: 15130439--15132803 Score: 2951
Period size: 857 Copynumber: 2.7 Consensus size: 865
15130429 ATCACAGGAT
* * *
15130439 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGACTGGGGGGTGTACGCACATGATGTG
1 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* * *
15130504 CGATGGTTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCAC
65 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
15130569 A--CCGTTAAGGAGCAATTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
130 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
*
15130632 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTAC-TCTTCGAGTTTTTAGCTGAATTTTTTT
195 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAT-TTCGAGTTTTTAGCTGAATTTTTTT
* * *
15130696 GTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGACAAAACGCCTTCCGAAAA
258 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15130761 AATTTAAAAAATCCTGAACCACAAAAAGTTTCGAAAATCATGAAAAACAGAAAACGAGTCATCTT
323 AA-TTAAAAAAT-CTG-----CAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15130826 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
381 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
15130891 TTGGCATGCAGAAATATGAAGATGTGG-ATAAACCCACCTACCACCCTATCGATCCACGGCTTGC
446 TTGGCACACAGAAATATGAAGATG-GGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
* * * * * *
15130955 GCATCCCATCTCTCTGGTCGGCGTAGT-----GC-TC-GCCCGCCCGTTCGGTTCGTCGGTTGGC
510 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCGCCGGCCCGCCCGTTCGTTTTGTCGGTTGGC
** * **
15131013 TTAGATATACGGAGTTCATTCCCATTCTAAGATTGGACCAGACCTAGAGTTGCGACAGTAGGATC
575 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGAGTTGCGACAGTAGGATC
* * **
15131078 GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCTGGTTGA
640 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGA
** * * *
15131143 GTGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAGCATAC
705 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT-A--ATAC
** *
15131208 GAACTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGGGGTAGCACATGTTGGGCTCGAG
767 GAAC-TCA---CCAG-C----A-CGGACT-G--CGAGGGTTACGGTAGCACATGCTGGGCTCGAG
* ** * *** * * * *
15131273 CATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACTATCGTCGGGG
819 CATATGCTACTGCCACATTTTTCATCACCGAGGCACCATCGTCAGAG
* ** * * *
15131320 AACCTAACCCACGACATTGGGGTTCCGACGATCGGGAGGGCCAGGGGGTGTGCTCACATGATGTG
1 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTG
* * * **
15131385 TGATGGGTACTGGTACTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTAAAGAACTCAC
65 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15131450 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
130 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* *
15131515 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
195 GG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15131580 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAAGA
259 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*** * * *
15131645 A-TCCCAAAT-TGTAAAAAGTTTCGTAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
324 ATTAAAAAATCTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
15131708 ACTTCACGTGAAGGCTTAAAGGACCACTGTTTGAATTTACACGCCATAAAAATGGCATTGGCACA
389 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
15131773 CAGAAAGATGAAGATGGGCCTAAACCCACCTACAACCCTATTGATCCACGGCTTGCGCATCCTGT
454 CAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGT
*
15131838 CTCTTTGGCCGACGTAGTGCCCACGCGCCGGCCCGCCCGTTCGTTTTTGTCGGTTGGCTTAGGCA
519 CTCTCTGGCCGACGTAGTGCCC-CGCGCCGGCCCGCCCGTTCG-TTTTGTCGGTTGGCTTAGGCA
* * * * * * * ** **
15131903 TACAGAGTTCATTTCTAGTCTAAGATCAGTCCAGA-CTGTGGGTTGTGGTAGTAGGATCGGTAGC
582 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCT-AGAGTTGCGACAGTAGGATCGACAGC
* * *
15131967 ACGTATAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGCACCC
646 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGCACCC
*
15132032 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-A-A-G-A-TCA-C
711 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAATACGAACTCACC
* **
15132091 A-C-CGGA-T-CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATATGCTACTGCCGTATTTTT
776 AGCACGGACTGCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATATGCTACTGCCACATTTTT
*
15132152 CATCACCGAGTCACCATCGTCAGAG
841 CATCACCGAGGCACCATCGTCAGAG
15132177 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTG
1 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTG
*
15132242 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
65 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15132307 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
130 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15132372 CGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTGGCAGAATTTTTTTT
195 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
15132437 TGCATGCCAACGAAAATAAAAGGATCACGTCTACCAGGTTTGGTACCAAAACTCCTTCCGAAAAA
259 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15132502 ACTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
324 A--TTAAAAAATCT------GCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15132567 GGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGCA
381 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
15132632 TTTGCACATACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCG
446 TTGGCACACAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
* * *
15132697 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCTGCCCATTCCTTTTGT
511 CATCCCGTCTCTCTGGCCGACGTAGTG--C-CCCG--CG-CCG---GCCCGCCCGTTCGTTTTGT
15132762 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
567 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
15132804 GGACTGGACC
Statistics
Matches: 1286, Mismatches: 161, Indels: 81
0.84 0.11 0.05
Matches are distributed among these distances:
856 2 0.00
857 353 0.27
858 2 0.00
860 5 0.00
861 2 0.00
862 4 0.00
867 182 0.14
868 1 0.00
869 3 0.00
870 4 0.00
871 2 0.00
872 3 0.00
873 2 0.00
874 225 0.17
875 10 0.01
876 1 0.00
877 1 0.00
878 1 0.00
879 3 0.00
880 2 0.00
881 116 0.09
882 20 0.02
883 342 0.27
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (865 bp):
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TAAAAAATCTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCCGCGCCGGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGAGTTGCGACAGTAGGATCGACAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGCACCCGCACG
CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAATACGAACTCACCAGCAC
GGACTGCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATATGCTACTGCCACATTTTTCATCA
CCGAGGCACCATCGTCAGAG
Found at i:15134639 original size:715 final size:714
Alignment explanation
Indices: 15132029--15136411 Score: 5623
Period size: 706 Copynumber: 6.1 Consensus size: 714
15132019 CAGTTGAGCA
* * * **
15132029 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACAC-
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* * * * ** * *
15132093 CGGATCGAGGGTTACGGTAGCACATGCTGGGCTCG-GGCATATGCTACTGCCGTATTTTTCATCA
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGGCATGTGCTGGTGCCGTATTTTTCTTCG
* *
15132157 CCGAGTCACCATCGT-----CA----GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
131 CCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* *
15132213 GGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCC
196 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
15132278 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
261 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
15132343 CTGCCAGTAGCCATTAAAGTGTCTAAAATCGGGACATTTTTTTCAAATGGTCACAAAATCTTGTA
326 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * ** *
15132408 CATTTCGAGTTTTTGGCAGAATTTTTTTTTGCATGCCAACGAAAATAAAAGGATCACGTCTACCA
391 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* ** *
15132473 GGTTTGGTACCAAAACTCCTTCCGAAAAAACTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAA
456 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAA
*
15132537 AATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
520 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
15132602 TGTATGATTTTACAAGCCATAAAAATGGCATTTGCACATACAAATATGAAGATGTGCCTAAACCC
585 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* * * *
15132667 ACCTACCACCCTATTGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
650 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG
*
15132732 CCCGCCCGCCTGCCTGCCCATTCCTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
1 CCCG--C-CC-G-CT---CA----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
15132797 TAAGATCGGACT-GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGA-ACATGTGCCGGTGCCA
54 TAAGATCGGACTCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGGCATGTGCTGGTGCCG
* * * * * * *
15132860 CATTTTTCTTCGTCAGGGCACTATCATCGGAGCATCGTCGGAGAACCTGACCGGTGACATTGGGG
119 TATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC--CGGAGAACCTGACCGGCGGCATTGGGG
* *
15132925 TTCCGATGATCGGGGGGGCCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGC
182 TTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
15132990 CCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
246 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
15133055 GATTTTACAGGTTTGCTGCTAGTAGCCATCAAGGTGTCTTAAATGGGGACAATTTTTTCAAATGG
311 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
15133120 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAAGACAA
376 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * **
15133185 GGATTATGTCTACTAAGTTTGGGGCC-AAATTGCCTTCCGAAAAAATTTTAAAAAATCCAAAAAC
441 GGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCC-TGAAC
* * * *
15133249 CACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTTCACGTGA
504 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* **
15133314 AGACTTAAGAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
569 AGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * * **
15133379 AAGATGTGCGTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCAACTCTCTGGCC
633 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
15133444 GGCGTAGTGCCCGCCCGACCG
698 GGCGTAGTGCCCG--C--CTG
* * * * * ** * * *
15133465 CCCGACCGCTCGTTTCGTTGATTGGTTTAGTTATATGGAGTCCATTCCCAGTCTAAGATCAGA-T
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* * *
15133529 CGGA-CGAGGGTTGCGGCAGCACATGCTGGGC-CCAGGCCATGTGCTTGATGCCATA-TTTTCTT
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGG-CATGTGC-TGGTGCCGTATTTTTCTT
*
15133591 CGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGGACCTTGGCGGCATTGGGTTTTCCGA
129 CGCCGGGGCACCATCGTCGGAGCAT--CCGGAGAACCT-GACC--GGCGGCATTGGG-GTTCCGA
*
15133656 CGATCCGGGGGGCC-GGGGGTG-GCGCACATGATGGTGCGTATATGGGTGCTGGTACATTGGCCC
188 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT-GTGCG---ATGGGTGCTGGTAC-TTGGCCC
* * *
15133719 TTATATTGGGCCCACTATCCCTCAT-GAACCTCAAGAACTC-CACCCCCTT-AAGAGCATTTGAG
248 TTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * *
15133781 AATTTTACAGGTTGGCTGCTAGTAGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTCAAAAGG
312 -ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * ** *
15133846 TCACAAAATCTTATACATTTCGATTTTTTAGCTGAATTTTTTTATGCACACCAACAAAAATACAA
376 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
15133911 GGATCATGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG
441 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG
* * *
15133976 CAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGGCATGAAACTTCACGTGAAG
506 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
15134041 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACACAGAAATATGAAG
571 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* *
15134106 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCACATCCCGTCTCTCTGGCCGGC
636 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
15134171 ATAGTGCCCGCCTG
701 GTAGTGCCCGCCTG
* * *
15134185 CCCGCCCGTTTATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* * *
15134250 -GGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGA-GCATGTGCCGGTGCCGTATTTTTCTTCA
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGGCATGTGCTGGTGCCGTATTTTTCTTCG
* * * * * *
15134313 CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGACGACGTTGGGGTTCTGGCGATCG
131 CCGGGGCACCATCGTCGGAGCAT--CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* *
15134378 GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGC
194 GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
15134443 CCCCTATCCATCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGT
258 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
15134508 TTGCCGCCAGTATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
323 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
15134573 GTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTA
388 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* *
15134638 CCAAGTTAGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
453 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCA
* *
15134703 AAAATAGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
518 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
15134768 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
583 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * * *
15134833 CCACCTACCACCCTATCGATTCACGGCTTGCACATCCCGTCTCACTGGCCGTCGTAGTGCCTGCC
648 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCC
*
15134898 CTCCTG
709 CGCCTG
** * * *
15134904 CCCGCCCGCTCATTTCGTCAATTGTCTTACGCGTACGGAGTTCATTCCCAGTCTAAGATCGGA-T
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
** * * *
15134968 CAAACCGAAGGTTGCGGCAGCACATGCTGGGCTC-AGGCATGTACTGGTGTCGTATTTTTCTTCG
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGGCATGTGCTGGTGCCGTATTTTTCTTCG
* * * * *
15135032 CC-GGGCGCCATCGCCGGAGCATCATCGGAGAACCTGACCGGTGGCATTGAGGTTCCGATGATCG
131 CCGGGGCACCATCGTCGGAGCATC--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * * * *
15135096 GGAGGGCCGGGGGGTGTACGCAAATGATGTGCAATGAGTGGTGGTACTT-GCCCTTTATATTGGC
194 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-TTATATTGGC
* *
15135160 TCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGT
258 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
15135225 TTGCTGCCAGTAGTCGTTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
323 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
15135290 GTACACTTCGAATTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCACGTCTA
388 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * * *
15135355 CCTAGTTTGGGGTCAAAAATCCTTTCGAAAAAAATTTTAAAAAATCCTGAACCGTAAAAATTTTC
453 CCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
* * * *
15135420 AAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAATTTCACGTGATGGCTTAAGGGAC
517 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** *
15135485 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCTGAAATATGAAGATGTGCCTAAA
582 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
* * * * *
15135550 CCCATCTACCACCCTATCGATCTAGGGCTTGCGCATCCCGTCTCACTGGCCGCCGTAGTGCTCGC
647 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-C-C
*
15135615 CCTCTCG
710 GC-CT-G
* * * * *
15135622 CCCACCCACTCATTTCGTCGATTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATC-GAAT
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
** * * * *
15135686 CAAACCGAGGGTTG-TGCAGCACAAGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTGTCTTCG
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGGCATGTGCTGGTGCCGTATTTTTCTTCG
* * * * *
15135749 TCGGGGCACCATCGTC---G-A-----AGAACCTGACCGGTGCCATTGGGGTTTCGATGATCGGG
131 CCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* *
15135805 GGAGCC-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
196 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * * *
15135869 CTATCGCTCGTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTTATAGGTTTG
261 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
15135934 CAGCCAGTAGCTATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAACTCTTGTA
326 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
15135999 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATAACGTCTACCA
391 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
** * * **
15136064 AGTTTACGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTTGAACTGCAAAAAGTTTTGAA
456 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCTGAACCGCAAAAAGTTTCAAA
* * *
15136129 AATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCAT
520 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
15136194 TGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAGATGAAGATGTGCCTAAACCC
585 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* * ** * ** *
15136259 ACCTACAACCCTATTGATCCACGGCTTGCGTGTCCCGTCTCTCTGGTCGATGCAGTGCCCACCCG
650 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCG
*
15136324 CCGG
711 CCTG
* * *
15136328 CCCGCCCGCTCATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC-
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* * *
15136392 CAGACTGTGGGTTGCGGCAG
66 CGGACCGAGGGTTGCGGCAG
15136412 TAGGATTGGT
Statistics
Matches: 3215, Mismatches: 379, Indels: 168
0.85 0.10 0.04
Matches are distributed among these distances:
703 4 0.00
705 11 0.00
706 498 0.15
707 51 0.02
708 4 0.00
709 1 0.00
710 1 0.00
711 2 0.00
713 15 0.00
714 29 0.01
715 488 0.15
716 38 0.01
717 306 0.10
718 360 0.11
719 141 0.04
720 134 0.04
721 118 0.04
722 24 0.01
723 13 0.00
724 132 0.04
725 101 0.03
726 231 0.07
727 293 0.09
728 90 0.03
729 120 0.04
730 2 0.00
731 1 0.00
733 7 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGGCATGTGCTGGTGCCGTATTTTTCTTCG
CCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG
Found at i:15137418 original size:26 final size:26
Alignment explanation
Indices: 15137379--15137431 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15137369 GTTAACTTAG
15137379 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15137405 GCATACGGAA-TTCATTCCCAGTCTAA
1 GCATAC-GAAGTTCATTCCCAGTCTAA
15137431 G
1 G
15137432 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15138316 original size:26 final size:26
Alignment explanation
Indices: 15138280--15138332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15138270 GTTGACTTCG
15138280 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15138306 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15138332 G
1 G
15138333 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15139756 original size:896 final size:897
Alignment explanation
Indices: 15136517--15139968 Score: 4576
Period size: 897 Copynumber: 3.9 Consensus size: 897
15136507 GTTGACTTAG
* * *
15136517 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * *
15136582 CTCAGGCATGTGCTGCTGCCGTATTTTTCTTCGCCGGGTCACCAT--C---G---C-T-GGAGAA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGGAGCATCGTCGGAGAA
* *
15136637 CCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
15136701 GATGGGTACTGCTACTTCGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACA
195 GATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15136766 CCTCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCAAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15136831 CGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAACTTTTTTGT
325 -GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAAATTTTTTGT
** *
15136896 GCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTACCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * * * *
15136961 TTTTAAAAAATCCCAAACCGCTAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCATG
454 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
15137026 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTCCAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
15137091 TGGCATGCAGAAATATGAAGATGTACCAAAACCCGCCAACCACCTTATCGATCCACGGCTTGCGC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** *
15137156 ATCCCGTCTCTCTGGCTGGCGTAGCACCCGCCCGCCCGTCCGCAT-GTTTCATCGGTTGGCTTAG
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-TCGTTTCATCGGTTGGCTTAG
* * *
15137220 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCAGCAGTAGGATCGACA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGTAGGATCGGCA
** * ** * * * *
15137285 GCATGCAGAGGGGGACCCGATTGATCCTCGGTTTACGCATCCCGCCCCTCTGGATGGCTGAGCAC
778 GCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGACGGCTGAGCGC
* * *
15137350 CCGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15137405 GCATACGGAA-TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGG
* * * * ** * *
15137469 GCT-TGGACAAGTGCTGGTGTCACATTTTTCTTTGTCGGGATACCATCGCCGGAGCATCATCGGA
65 GCTCAGG-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-ACGGAGCATCGTCGGA
* * * *
15137533 GAACCTGACCGACAGCATTGGGGTTCCGGCAATC-GGGGG-CGGGGGGGTGTGCGCACATGATAT
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
15137596 GCGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCTTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** *
15137661 CACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15137726 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAAATTTTTT
323 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAAATTTTTT
* * * * *
15137791 GGGCATGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACAT-TTTCGGAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAA
* * * *
15137855 AAATTTTAAAAAAT-CTCGAATCGCAAAAAGTTTCGAAAATCACGACAAATAGAAAATGAGTCGT
451 AAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
*
15137919 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15137984 GCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** *
15138049 GCGCATCCCTTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGGCCGCCCGCTTGTTTTGTCAGTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCATCGGTT
** * * * * *
15138114 GGCTTAGTTATACGGAGTTCATTCCTAGTCTAAGATCAGTTTGGACTGAGGGTTGCAGTAGCAGG
706 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGTAGG
** * * * *
15138179 ATCGGCAGCACACAGAGAGGGACCCGACCGATCCCTGACTTGCGCATCTCGCCCCTCTAGTCGGC
771 ATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGACGGC
* * *
15138244 TGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTCGGCATACAGAGTTCATTCCCAGTCTAA
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
15138306 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCAATGGTTGCGGCTGCCCATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** * * * *
15138371 TTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGTACCATCACCAGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCGTCGGAGA
* ** * *
15138436 ACCTGATCGGTGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGACGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
15138501 GATGGGTGCTGCTACTTGGCCATTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15138566 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-
* *
15138631 GGGACACTTTTTTCAAATGGTCACAAAGTCTTATACACTTCGAGTTTTTGGCTGAAATTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAAATTTTTTGT
* * *
15138696 GCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTTGGGACCAAAACTCTTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
15138760 TTTTAAAAAATCTTGAACCGTAAAAATTTTTGAAAATCAT-AAATAATAGAAAACGAGTCGTCTT
454 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAA-AATAGAAAACGAGTCGTCTT
* * *
15138824 GCCATGAAACTTCATGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15138889 TTGGCATGTAGAAATATGACGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15138954 CATCCTGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGTTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * ** * * * *
15139019 TCATTCGGAGTTCATTCCCAGTCTGAGATCAGATCAAACCGAAGGTTG-AGGCAGTAGGATTGGT
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCA-GCAGTAGGATCGGC
* * * *
15139083 AGTATGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCG
777 AGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGACGGCTGAGCG
* * * * *
15139148 CCGGGATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAAGTCTAA
842 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15139204 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
15139269 CTCAGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGGAGCATCGTCGAAGAA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGGAGCATCGTCGGAGAA
* * * *
15139334 CCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGTC-AGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * *
15139398 ATGGGTGCTGCTATTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAATCTTGAGAACTCACA-
196 ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15139462 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATCG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-G
* * * * *
15139527 GGACACTTTTTTCAAAAGGTCACAAAATCTTATACATTTCGATTTTTTCGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAAATTTTTTGTG
* * ** * *
15139592 CACGCCAATAAAAATATGAGGATCATGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
15139657 TTTAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGG
455 TTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
15139722 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15139787 GGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
585 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * **
15139852 TCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCCCGTTCATTTTGTCGGTTGGCTTAGGC
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * *
15139917 ATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAG
715 ATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACTGAGGGTTGCAGCAG
15139969 CACATGCTGG
Statistics
Matches: 2236, Mismatches: 293, Indels: 62
0.86 0.11 0.02
Matches are distributed among these distances:
887 2 0.00
888 88 0.04
889 2 0.00
891 1 0.00
894 1 0.00
895 152 0.07
896 381 0.17
897 514 0.23
898 274 0.12
899 33 0.01
900 4 0.00
901 308 0.14
902 237 0.11
903 239 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAAATTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGTAGGATCGGCAGCA
TGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGACGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15140970 original size:718 final size:719
Alignment explanation
Indices: 15139207--15142036 Score: 4209
Period size: 719 Copynumber: 3.9 Consensus size: 719
15139197 AGTCTAAGCA
* * * * *
15139207 TACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTC
1 TACGGAGTTCATTCCTAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * ** * *
15139272 AGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC-GGAGCATCGTC-GAAGAAC
66 GGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCATCAG-AGAAC
* * * * * *
15139335 CTGACCGGCGGCATTGGGGTTCTGACGATC-GGGGGGTCAGGGGGTGTGCGCACATGATGTGCGA
130 CTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCAAATGATGTGCGA
* * * * *
15139399 TGGGTGCTGCTATTTGGCCCTTATATTGG-TCCCCTATCCCTCATCAAATCTTGAGAACTCACA-
195 TGAGTGCTGGTACTTGGCCCTTATATTGGCT-CCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15139462 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATCG
259 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGG
* * * * * * *
15139527 GGACACTTTTTTCAAAAGGTCACAAAATCTTATACATTTCGATTTTTTCGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTCTTAGCTGAATTTTTTTGTG
* * ** * * *
15139592 CACGCCAATAAAAATATGAGGATCATGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAA-
389 CATGCCAAAAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAG
* * *
15139656 TTTTAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
454 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
*
15139721 GCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15139786 TGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCAC
* * * * * * ** *
15139851 ATCCCGTCTCTCTGGCCGGCATAGTGCCTG--C-CC-GCCCGCCCGTTCATTTTGTCGGTTGGCT
649 ATCCCGTCTCACTGGCCGCCGTAGTGCCCGCCCTCCTGCCCGCCCGCTCATTTCGTCAATTGTCT
*
15139912 TAGGCA
714 TAGGCG
* **
15139918 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 TACGGAGTTCATTCCTAGTCTAAGATCGGATC-AAACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** * ** *
15139982 CGAGCATGTGCCGGTGCCGTATTTTTCTTCACCGGGGCACCATCG-TCGAAGCATCGCCGGAGAA
65 CGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCATCAGAGAA
* * * * * * * *
15140046 CCTAACCGGCGACGTTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
129 CCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCAAATGATGTGCG
* * * *
15140111 ATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACAC
194 ATGAGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15140176 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGCCAGTA-TCCATTAAAGTGTCTGAAATG
259 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGT-CATTAAAGTGTCTAAAATG
* * *
15140240 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTCTTAGCTGAATTTTTTTGT
*
15140305 GCATGCCAAAAAAAATACAA-GAATCACGTCTACCAAGTTAGGGGCCAAAACTCCTTCCGAAAAA
388 GCATGCCAAAAAAAATACAATG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15140369 A-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACAAGTCGTC
452 AGTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACAAGTCGTC
15140432 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15140497 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATTCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTG
* *
15140562 CGCATCCCGTCTCACTGGCTGCCGTAGTGCCCGCCCTCCTGCCCGCCCGCTCATTTCGTCAATTG
646 CACATCCCGTCTCACTGGCCGCCGTAGTGCCCGCCCTCCTGCCCGCCCGCTCATTTCGTCAATTG
15140627 TCTTAGGCG
711 TCTTAGGCG
* *
15140636 TACGGAGTTCATTCCTAGTCTAAGATCGGATCAAATCGACGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCTAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTC
15140701 GGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCATCAGAGAACC
66 GGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCATCAGAGAACC
* *
15140766 TGACCGGTGGCATTGAGGTTCCGATGATCGGGGGGGCCGGGGGGTGTACGCAAATGATGTGCGAT
131 TGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCAAATGATGTGCGAT
* *
15140831 GAGTGGTGGTACTTGGCCTTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GAGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
15140896 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTAAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGGGG
* *
15140961 ACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTCTTAGCTGATTTTTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTCTTAGCTGAATTTTTTTGTGCA
* * * *
15141026 TGCCAAAAAAAATTCAATGATCACGTCTACCTAGCTTGGGGCCAAAACTCCTTTCGAAAAAAGTT
391 TGCCAAAAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTT
* * *
15141091 TTAAAAAATCCTGAACCGTAAAAATTTTCAAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
* *
15141156 ATGAAATTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
15141221 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATTCACGGCTTGCGCAT
586 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCACAT
*
15141286 CCCGTCTCACTGGCTGCCGTAGTGCCCGCCCTCCTGCCCGCCCGCTCATTTCGTCAATTGTCTTA
651 CCCGTCTCACTGGCCGCCGTAGTGCCCGCCCTCCTGCCCGCCCGCTCATTTCGTCAATTGTCTTA
15141351 GGCG
716 GGCG
* * *
15141355 TACGGAGTTCATTCCTAGTCTAAGATCGGATCAAATCGATGGTTACGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCTAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
15141420 GGGCATGTACTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCATCAGAGAACC
66 GGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCATCAGAGAACC
* *
15141485 TGACCGGTGGCATTGAGGTTCCGATGATCGGGGGGGCCGGGGGGTGTACGCAAATGATGTGCGAT
131 TGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCAAATGATGTGCGAT
* *
15141550 GAGTGGTGGTACTTGGCCTTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GAGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
15141615 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGGGG
*
15141680 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTCTTAGCTGATTTTTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTCTTAGCTGAATTTTTTTGTGCA
* * *
15141745 TGCCAAAAAAAATTCAATGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTTCGAAAAAAGTT
391 TGCCAAAAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTT
* *
15141810 TTAAAAAATCCTGAACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
* * *
15141875 ATGAAATTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
15141940 GCAGGCTGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGA-TCTAGGGCTTGCACA
586 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTC-ACGGCTTGCACA
* * *
15142004 TCCAGTCTCACTGGCCACCGTAGTGCTCGCCCT
650 TCCCGTCTCACTGGCCGCCGTAGTGCCCGCCCT
15142037 TCCGCCCCTC
Statistics
Matches: 1957, Mismatches: 141, Indels: 34
0.92 0.07 0.02
Matches are distributed among these distances:
710 1 0.00
711 93 0.05
712 39 0.02
713 88 0.04
714 380 0.19
716 1 0.00
717 2 0.00
718 431 0.22
719 921 0.47
720 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (719 bp):
TACGGAGTTCATTCCTAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTC
GGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCATCAGAGAACC
TGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCAAATGATGTGCGAT
GAGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTCTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTT
TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCACAT
CCCGTCTCACTGGCCGCCGTAGTGCCCGCCCTCCTGCCCGCCCGCTCATTTCGTCAATTGTCTTA
GGCG
Found at i:15142685 original size:26 final size:26
Alignment explanation
Indices: 15142649--15142701 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15142639 ATTGACTTTG
*
15142649 GCATACAGAGTTTATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
* *
15142675 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
15142701 G
1 G
15142702 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:15145189 original size:26 final size:26
Alignment explanation
Indices: 15145153--15145205 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15145143 GTTGACTTAG
15145153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15145179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15145205 G
1 G
15145206 ATCGGACCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15145681 original size:884 final size:888
Alignment explanation
Indices: 15143361--15146945 Score: 4549
Period size: 900 Copynumber: 4.0 Consensus size: 888
15143351 CTCGCCCGCC
* * * * * * *
15143361 CGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCTTACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** *
15143425 GAGTTCATTCTTATTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* * ** * *
15143490 ATCTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACTGGAGCATCACCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCACGGCACC-GCA-TCG-G----ACCGGAGAACCTGAC
*
15143555 CGACGTCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
189 CGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
15143619 TGCTGGT-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCACACTCCCT
253 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
15143683 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGGCA
318 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15143748 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTATGCATAC
383 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATAC
* * *
15143813 CATA-AAAAATACAAGAATCACGTCTACCAAGTTCGGGGCCAAAACCCCTTTCAAAAAAATTTTA
448 CA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTA
* * * * *
15143877 AAAAAGCCCGAACCGTAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
512 AAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
15143942 AAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCA
577 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
15144007 CGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCC-
642 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* * * *
15144071 GTATCTCAGGCCGACGTACTGCCTGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
707 GTCTCTCTGGCCGACGTA--G-CTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATAC
* * * ** * * * *
15144136 GGAGTTCATTACAATTCTAAGATCAGACCGGATCAAGAGTTGAGGTAGCAGGATCGGCAACACGC
769 GGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAG-GTTGCGGCAGCAGGATCGGCAACACGT
* * * * *
15144201 AGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAG
833 AAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAG
*
15144257 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAG-AT-C-
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
15144319 -AG---------A--C-----T--G---G-ACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
** * *
15144361 ATGTGCTGGTGCCGC-TTTTTCTTCGTCAGGGCACCATCATCGGAGCATCGACGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCACGGCACC-GCATC-G-G-A-C--CGGAGAACCTGAC
* * * * * * *
15144425 GGGCGGCATTGGGGTTCCTACGATCGGAGGGCC-GGGGGG-GTGCACACTTGATGTGTGATGGGT
189 CGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
15144488 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCCTT
254 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* ** *
15144553 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGTAATTAAAGTGTCTGAAATGGGGATAC
319 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
15144618 -TTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGCC
384 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACC
* * * **
15144682 AATAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
449 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAA
* *
15144747 AAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
514 AAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
15144812 ACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
579 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
15144877 CAGAAATATGAAGATGTGCGTAAACCAACCTACCACCTTATCGATCCACGGCTTGCGCATCCTGT
644 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGT
* *
15144942 CTCTCTGACCGACGTAG-TGCCCGCTCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
709 CTCTCTGGCCGACGTAGCTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * ** *
15145006 TCATTCCCAGTCTAAGATCGGATCAAACCAAGGGTTGCGGCAGCAGGATCCACAGCACGTAAAGG
774 TCATTCCCAGTCTAAGATCAGACCAAACCAA-GGTTGCGGCAGCAGGATCGGCAACACGTAAAGG
* * * *
15145071 GGGTCCCGG-CTGATCCCCGGCTTACG-ATCTCGCCCCTTTGGCCAGTTGAG
838 GGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAG
*
15145121 CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
15145186 GAGTTCATTCCCAGTCTAAGATCGGACCGCACCAAGGGTTGCAGCAGCACATGCTGGGCT-GGAG
66 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGG-G
* * *
15145250 CATGTGCTGGTGTCGCATTTTTCTTCACCGA-GGCA-C-CATC-G-CCTGTGAACCTGACCGACG
130 CATGTGCTGGTGCCGCATTTTTCTTCACC-ACGGCACCGCATCGGACCGGAGAACCTGACCGACG
* * *
15145310 GCATTGGGGTTCCGACAATCGGGTGGGTCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTG
194 GCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
15145375 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
258 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
15145440 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
323 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
15145505 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATACCAACA
388 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACCAACA
* *
15145570 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAACAATTTTAAAAAAT
453 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAAAAT
* * *
15145635 CCCAAACCACAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
518 CCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
15145700 CACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATA
583 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
15145765 AATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATTCACGGCTTGCGCGTCCTGTCTCT
648 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
* * * * ** *
15145830 CTGGCCGATGTATTGCCCGCCTCCCACCTGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGA
713 CTGGCCGACGTA--G-CTGCC-CGC-CC-GCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * ** *
15145895 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATTTGCAGCACGTAAA
772 GTTCATTCCCAGTCTAAGATCAGACCAAACC-AAGGTTGCGGCAGCAGGATCGGCAACACGTAAA
* * * * *
15145960 TGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGTCCCTTTGGCCGGCTGAG
836 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAG
** * * *
15146013 CGCCCGCTTGCTCGTTTCGTGGGTTGCCTTAGGTATACGGAGTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
15146078 GAGTTCATTCCCAGTCTAAGATTGGATCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* ** * *
15146143 ATGTGCTGGTGCCACATTTTTCTTCACTCACCTTCACCGGTGCATC-G-TCGGAGAACCTGATCG
131 ATGTGCTGGTGCCGCATTTTTCTTCAC-CA-CGGCACC---GCATCGGACCGGAGAACCTGACCG
* * * *
15146206 GCGGCATTAGGGTTCCGATGATCGGGGCGGCCGAGGGTGGTGTGCGCACATGATGTGCGATGGGT
191 ACGGCATTGGGGTTCCGACGATCGGGG-GGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * *
15146271 GCTGGTACTTGTCCCTTATATTGGCCCCTTATCGCTCATTAAACCTCAAGAACTCACACCCCCTT
254 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
15146336 ACAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATA
319 A-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* ** * * *
15146400 ATTTTTTCAAAATGGTCACAAAATCTTGTACACTTCAAGGTTTTAGCTGAATGTTTTTATGCATG
383 CTTTTTTC-AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATA
* * * *
15146465 CCAACAAAAATACAAGGATCACGTTTAGC-AGTTAGGGGCCAAAACCCCTTCCAAAAAAATTTAA
447 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTA
*** * * * *
15146529 AAAAATCTTGAATCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
512 AAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
15146594 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCA
577 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
15146659 CACAGAAATATGTAGATGCGCCTAAACCCA-CTCACCACCCTATCGATCCACGGCTTGCGCATCC
642 CGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
15146723 CGTCTCTCTGGCCTGTAC-T-GCCCGCCCGCCCGCCAACCCGTTTGTTTCATCGGTTGGCTTAGG
706 TGTCTCTCTGGCC-G-ACGTAG-CTGCCCGCCCGCC--CAC--TCGTTTCATCGGTTGGCTTAGG
* * * * *
15146786 CATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGTGGCAGCAGGATCGGCAA
764 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-AACCAAGGTTGCGGCAGCAGGATCGGCAA
* * * * * *
15146851 CATGTAGAGAGGGACTCGGTCGATCCTCGGCTTGCGCATTCCG-CCCTTCTGG-CAGGCTGAG
828 CACGTAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTT-TGGCCA-GCTGAG
* *
15146912 CACCCGCACTCTCGTTTCGTGGGTTGACTTAGGC
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
15146946 TGTGCTCAAG
Statistics
Matches: 2357, Mismatches: 256, Indels: 149
0.85 0.09 0.05
Matches are distributed among these distances:
864 79 0.03
865 115 0.05
866 2 0.00
867 4 0.00
868 326 0.14
869 142 0.06
870 58 0.02
871 46 0.02
872 1 0.00
875 1 0.00
877 2 0.00
879 1 0.00
880 34 0.01
881 4 0.00
882 8 0.00
883 144 0.06
884 317 0.13
885 1 0.00
886 2 0.00
888 7 0.00
889 5 0.00
890 45 0.02
891 125 0.05
892 165 0.07
893 5 0.00
894 2 0.00
895 5 0.00
896 46 0.02
897 13 0.01
898 14 0.01
899 186 0.08
900 371 0.16
901 80 0.03
902 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCACCACGGCACCGCATCGGACCGGAGAACCTGACCGACGGC
ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAAAATCCC
AAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTG
GCCGACGTAGCTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAAACCAAGGTTGCGGCAGCAGGATCGGCAACACGTAAAGGGGGACCCG
GTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAG
Found at i:15146083 original size:26 final size:26
Alignment explanation
Indices: 15146047--15146097 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15146037 TGCCTTAGGT
*
15146047 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
15146073 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15146098 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15148497 original size:26 final size:26
Alignment explanation
Indices: 15148461--15148513 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15148451 GTTGACTTAG
15148461 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15148487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15148513 G
1 G
15148514 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15151549 original size:716 final size:712
Alignment explanation
Indices: 15150363--15151709 Score: 2035
Period size: 716 Copynumber: 1.9 Consensus size: 712
15150353 TCTTCGCCGG
* * *
15150363 AGCATTGTCGGAGAACCTGACCGATAGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGAGTG
1 AGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGAGTG
* * * *
15150428 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTAATATTGGCCTCCTATCCCTCATCAAAC
66 CGCACATGATGTACGATGGGTGCAGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAAC
*
15150493 CTTGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTA
131 CTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTA
15150558 AAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACAATTCAAGTTTTTAG
196 AAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACAATTCAAGTTTTTAG
*
15150623 CTGAATTTTTTGCTCATGCCAACAAAAATACAAGGATCAAATCTACCAAGTTTGGGCCAAAAATC
261 CTGAATTTTTTGCTCATGCCAACAAAAATACAAGCATCAAATCTACCAAGTTTGGGCCAAAAATC
* * * *
15150688 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTGGAAAATTGTGAAAAATAGAAAA
326 CTTCCAAAAAAAGTTTAAAAAATCCTGAACCGTAAAAAGTTTGCAAAATTATGAAAAATAGAAAA
* *
15150753 CGAGTCGTCTTGCCATGAAACTTCATGAGAAGGCTTAATGGACCGTTGTATGAATTTACAAGTCA
391 CGAGTCGTCTTGCCATGAAACTTCATGAGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCA
* *
15150818 TAAAAATGACATTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
456 TAAAAATGACATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATC
* * **
15150883 CACGGCTTGCGTATCCCGTCTCTCTGGCCTAAGT-AGTGCCTGCCCGC-CTGCCTGCTAGCTCGT
520 CACGGCTTGCATATCCCGTCTCTCTGGCCGAAGTCAGTGCCCACCCGCTC-GCC--C--GCTCGT
* **
15150946 TTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCAAGGGTTG
580 TTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCAAGGGTTG
15151011 TGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACTATCCC
645 TGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACTATCCC
15151076 CGA
710 CGA
* * * **
15151079 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG-CTGGGGGGTTT
1 AGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGAGT
* *
15151143 TCGCACATGATGTACGATGGGTGCAGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAA
65 GCGCACATGATGTACGATGGGTGCAGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAA
* * *
15151208 CC-CGAGACCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
130 CCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATT
* * ** **
15151272 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCGTGTACGCTTTGAGTTTTTA
195 AAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACAATTCAAGTTTTTA
* **
15151337 TCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAA
260 GCTGAA-TTTTTTGCT-CATGCCAACAAAAATACAAGCATCAAATCTACCAAGTTT-GGGCCAAA
* * *
15151401 ACTCCTT-CAAAAAAAGTTTAAAAAATCCTGAACCGTAAAAAGTTT-CCAAATTCATGAAATATA
322 AATCCTTCCAAAAAAAGTTTAAAAAATCCTGAACCGTAAAAAGTTTGCAAAATT-ATGAAAAATA
* * * *
15151464 GAAGATGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAA-GAGACCATTGTATGAATTTAC
386 GAAAACGAGTCGTCTTGCCATGAAACTTCATGAGAAGGCTTAATG-GACCATTGTATGAATTTAC
* *
15151528 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTAT
450 AAGCCATAAAAATGACATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTAT
* *
15151593 CGATCCACGGCTTGCATATCTCGTCTCTCTGGCCGACGTCAGTGCCCACCCGCTCGCCCGCTCGT
515 CGATCCACGGCTTGCATATCCCGTCTCTCTGGCCGAAGTCAGTGCCCACCCGCTCGCCCGCTCGT
*
15151658 TTCGTCGATTGGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCAGACC
580 TTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
15151710 AGACTGAGGG
Statistics
Matches: 568, Mismatches: 55, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
712 54 0.10
714 1 0.00
715 169 0.30
716 324 0.57
717 20 0.04
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (712 bp):
AGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGAGTG
CGCACATGATGTACGATGGGTGCAGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTA
AAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACAATTCAAGTTTTTAG
CTGAATTTTTTGCTCATGCCAACAAAAATACAAGCATCAAATCTACCAAGTTTGGGCCAAAAATC
CTTCCAAAAAAAGTTTAAAAAATCCTGAACCGTAAAAAGTTTGCAAAATTATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCATGAGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCA
TAAAAATGACATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCC
ACGGCTTGCATATCCCGTCTCTCTGGCCGAAGTCAGTGCCCACCCGCTCGCCCGCTCGTTTCGTC
GATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCAAGGGTTGTGGTAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACTATCCCCGA
Found at i:15152746 original size:26 final size:26
Alignment explanation
Indices: 15152716--15152766 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15152706 TGACTTAGGC
*
15152716 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
15152742 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
15152767 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:15153198 original size:900 final size:899
Alignment explanation
Indices: 15150963--15162893 Score: 14226
Period size: 892 Copynumber: 13.3 Consensus size: 899
15150953 GTTGGCTTAG
* * * * * ** *
15150963 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCAAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
15151028 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACTATCCCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
15151093 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGTTTTCGCACATGATGTAC
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
15151158 GATGGGTGCAGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACC-CGAGACCTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15151222 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15151287 GGGACACTTTTTTCAAATGGTCACAAAATCGTGTACGCTTTGAGTTTTTATCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15151352 GCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * * *
15151416 GTTTAAAAAATCCTGAACCGTAAAAAGTTTCCAAATTCATGAAATATAGAAGATGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
15151481 CCATTAAACTTCATGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
15151546 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCAT
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15151610 ATCTCGTCTCTCTGGCCGACGTCAGTGCCCACCCGCTCGCCCGCTCGTTTCGTCGATTGGCTTAG
651 ATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
15151675 GTATACAGAGTTCATTCCCAGTCTAAGATC-AGACCAGACTGAGGGTTGCGACAGCAGGATTGGC
715 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGCG-TAGCAGGATCGGC
* * * * ** * * *
15151739 AACATGCAAAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCTGCCCCTCTTGCCGGCTGGGCG
779 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
15151804 CCCGCATGGCTCGTTTCGTGGGTTGACCTAGGCATAC-GAGTTGATTCCCAGTCTAA
844 CCCGCA-CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15151860 G-AT-C--AG---A---CCGGTCT----T-----------GAGGGTTACGACAGCAACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGC-ACATGCTGG
* * * ** ** * * *
15151900 GCCTCGAGCATGCGCTTGTG-C-CATATTTTCTTTGCCGGGGTTGCCATCGTCGGAGCACCGCCG
65 G-CTCGGGCATGTGCTGGTGCCGCAT-TTTTCTTCACCGGGG-CACCATCGCCGGAGCATCGTCG
* * ** * *** * *
15151963 GAGAACCATAACCCGATGGCATTTAGGGTTTTAAGCGAT-TGGGGGGCCGGGGGGGTGTGCGCAT
127 GAGAACC-TGA-TCGGCGGCA-TTGGGGTTCCGA-CGATCGGGGGGGCC-GGGGGGTGTGCGCAC
*
15152027 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
187 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
15152092 GAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
252 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
** *
15152157 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAAGAGTTTTGAGCTGAA
317 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * ** * *
15152222 TTTTTTTGTGTATGCCAACAAAAAGACAAGGATCATGTCTATGAAGTTTGGGGCAAAAACTCATT
382 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ** * * *
15152287 CCGAAATAATTTTAAGAAAT-TTGAAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAATG
447 CCGAAAAAATTTTAAAAAATCCCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
15152351 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTCATAAGCCATA
511 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
15152416 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
576 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * ** *
15152481 TGCCTTGCGCATCCCGTCTCTTTGGCTGGCGTAGTGCCAACCTGCCCGACCGCTCGTTTCGTCGG
641 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGG
* * * * *
15152546 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAACATCGA-ACCAGACTGAGGGTTACGATAGC
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGCG-TAGC
* * * * * * *
15152610 AGGATTGGTAGCACACAGAGGGGGACCCGATCGATTCCCGGCTTGTGCATCTCGCCCCTCTGACC
770 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCC
* *
15152675 GGCTGAGCGCCCGCATGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15152740 GTATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGACGGTTGCGACAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15152805 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGAGCACTATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
15152870 ACCTGA-CGGGCGGCATTTGGGTTTCGATGATCGGGGGGGCTGGGTGGGTGTGTGCACATGATGT
131 ACCTGATC-GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGT
* *
15152934 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCG
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15152999 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * **
15153064 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTGCTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15153129 GTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAT
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** *
15153194 AATTTTAAAAAATCCAAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15153259 TGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15153324 ATTGGCATGCAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCATATCGATCCATGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15153389 GCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCT-CCCGCCCGCTCATTTCCTCGGTTGAGGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCTGCCCGCCCGCTCGTTTCGTCGGTT--GGC
* * * * * *** * *
15153453 TTGTGGCAGTA-GGA--TCGA----CAG-C-ACGCATAGGGGACCCGACCGATCCTCG-GCTTGC
711 TT-AGGCA-TACGGAGTTC-ATTCCCAGTCTAAG-AT-CGAGACCGGACCGAGGGTTGCG-TAGC
* * * * * * ** ** * ** **
15153508 -GTATC-CCACCCCTCTG-GCCGG--TTGA-C-A-GCCC-G--TACGC-T--CG--TTTCGTGGT
770 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTC-TGG-
** * * ** ** ***** * * *
15153557 TTGACTTAG-G--CATACG-GAG-TTCATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAATCT
833 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
15153616 AA
898 AA
* * *
15153618 G-AT-C-G-G---------A--C------C-G----GACCGAGGGTCACAGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
15153657 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACTATCACCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15153722 ACCTGATCGGCGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * * *
15153787 CGATGGGTGCTGGTAGTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAATCTTGTGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
15153852 ACCCTCTTAAAGAGTAATTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15153917 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTATCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15153982 TGCATGCCAGCAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15154046 AGTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
15154111 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAATCCATAAAAATGGTA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** **
15154176 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCCCCCTATCGATTTACGGCTTATG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
15154241 CATCCTGTCTCCCTGGCCGGCGTA--G--CGTCC-GCCAGCCCGCTTATTTCGTCGGTTGGCTTA
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
15154301 GGCATACGAAGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGTAGGATTGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTG-CGTAGCAGGATCGG
* * * * * * * *
15154365 CTGCACGCAGAGGGGGACCCGACCAATCCCTGGCTTGTGCATTCTGCCCCTTTGGTCGGCTGAGT
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
15154430 GCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15154487 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15154552 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * *
15154617 ATCTGACCGGCAGCATTGGGGTTTCGGCGATC-AGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15154681 GATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-ACTCACC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15154745 CCCCCTTAAAAAGCATTTGATATTTTACAAGTGTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15154810 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15154875 ACATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *** * *
15154940 TTTT-AAAAATCCCAAACTACAAAAAGTTTAAAAAATCATGAAAAATAGAAAACTAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
15155004 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
15155069 TGACACGCAGAAATATGAAGATGTGCCTAAACCCACTTGCCACCCTATCGATCCACGGCTTGTGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15155134 ATCCCGTCTCTCTGGCCGACGTACTGCCCGCCCGCCCACCCGCCCGCTCGTTCCATCAGTTGGCT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG----CCCGCCCGCTCGTTTCGTCGGTTGGCT
* *
15155199 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCAGACTGAGGG-T---TA-C---A---
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGCGTAGCAGGATCG
* * * * * *
15155252 GCAGCACGCAGAGGAGGACCCGACCGATCCCCGACTTGCGTATCCTGCCCCTCTGGCCAGCTGAG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
15155317 CGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGGGTTCATCCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * * **
15155375 GCATTCTGAGTTCATTCCCAGTCAAAGATCAGATCAGACCGAGGGTTGCGACAACATAAACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * **
15155440 CTCGGCCATGTGCTGGTGCTGTATTTTCCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15155505 ACCTGATCGGCGACATTGGGGTTCCGACGATCGAGGGGG-TGGGGGGTGTGCGTACATGATGTGC
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15155569 GATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15155634 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTCGCTACCAGTAGCCATTAAAGTGCTCTGAAAT
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAAT
*
15155699 GGGGAACACTTTTTTTCAAATGGTCACAAAATCTTGTTACACTTCGAGTTTTTTAGCTTAATTTT
325 GGGG-ACAC-TTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAG-TTTTTAGCTGAATTTT
* * * *
15155764 TTTGTGCTTGCCAACAAAAAT-CAAGGATCCACGTCTAACCAAGTTTGTGACCAATACTCCTTCC
386 TTTGTGCATGCCAACAAAAATACAAGGAT-CACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCC
* ** ** *
15155828 GATAAAATTTTAAAAAA-CCCGAACCACAAAAAAGTTTTGAAAATCGCTGAAAAATAG-AAACGA
449 GAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGA
* *
15155891 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCACAA
512 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
15155956 AAATGACATTGGCATGCAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCAC
577 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
15156021 GGCTTACGCATCTCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCGCCCGCCCGTCCGCCCGCT
642 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--GT------GCCCGCCTG--C--CCGCCCGCT
* * * *
15156086 CATTTCGTCGGTTGGCTTCGGCATACGGATTTCATTCCTAGTCTAAGATC-AGACCAAATCGGAC
695 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGA-C----CGGAC
* *
15156150 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACTCGACCGATCCCTGGCTT-TCGC
755 CGAGGGTTGC-GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGT-GC
* * * * * *
15156214 ATCCCACCCATC-GGCCGACTGAGCGCTCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGA
818 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
*
15156278 GTTCATTTCCAGTCTAA
883 GTTCATTCCCAGTCTAA
* * * * * * * *
15156295 GCATACGGAGTTCATTCTCACTCCAAGATCGAATC-GAACAGAGGGTTACGGCAGTAGATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
* * ** *
15156359 GCTCGAGCATGTGTTGGTGCAACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * ** *
15156424 AACCTAACCGACGATATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCGCACATGATG
130 AACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT--GCGCACATGATG
* ** *
15156489 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15156554 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGCCTCAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
15156619 ATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGATTTTGTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TT
* ** *
15156684 TTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTTCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
15156749 AAAATGTTGAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
15156814 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGATCCATAAAAATT
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
15156879 TCTTTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
15156944 GTGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCC-GCCCTCCCGCCCGCTCGTTTCGTCAGT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCTG----CCCGCCCGCTCGTTTCGTCGGT
* * * *
15157008 TGGCTTCGGCATACGGAGTTCATTCCTAGTCTAAGATCGAACTGAACCAGACCGAGGGTTGCGAC
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-A--G-ACCGGACCGAGGGTTGCG-T
* * * * * *
15157073 AGTAGGATCGGCAGCACGCAGAGAGGGACCCAACCGATCCTCGGCTT-TCGCATCCCACCCATC-
767 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGT-GCATCCCGCCCCTCT
* * * *
15157136 GGCTGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
831 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
15157201 CTAA
896 CTAA
* * * * * *
15157205 GCATATGGAGTTCATTCCCACTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * *
15157270 CTCGGGCATGTGTTGGTGCAACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * ** * *
15157335 ACCTGATCGACGGTAATAGGGTTCCGACGATTAGGGGGGCCGGGGGTGTGCGCGCATATGATGTG
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTG
15157400 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15157465 ACCGCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAA
260 ACC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * * *
15157530 TGGTGACACTTTTTTCAAGTGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGTTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
15157595 TTGCATGCCAATAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15157660 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
15157725 TGACATGAAACTTCACGTGGAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15157790 ATTGGCATGCAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15157855 ACATCCAGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * *
15157920 GGCATACGGAGTTCATTCCCAATCTAAGAT-TAGACTGGATTGAGGGTTACGGAAGCAGGATCAG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGC-GTAGCAGGATCGG
* * * * ** * *
15157984 CAGCACGTAGAGGGGGACCTGACTGATCCCCGACTTACGCATCCCGCCCCTCTGGTCGACTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
15158049 GCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15158106 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * **
15158171 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGAGGCACCATCGTGGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
15158236 ACCTGAAT-GGCAGCATTTGGGTTCCTG-CGTTCGGAGGGGCTGGGGTGGGGTGTGCACACATGA
131 ACCTG-ATCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGC--CGG-GGGGTGTGCGCACATGA
*** * *
15158299 TGTAAAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAT
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
15158364 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGCCAGAAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
15158429 AAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAGTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
15158494 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCTAAAACTCCTTCCGT
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * ** * *
15158559 AAAAACTTT-AAAAATCTCGAATCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCA
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
15158623 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15158688 GGCATTGGCACGTAGAGATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
15158753 TGCGCATCCCGCCTCTCTGGCCGGCGTATTGACCGTCCGCCCGCCCGCCCACTCATTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCTGCCCGCCCGCTCGTTTCGTCGGT
* * ** * *
15158818 TGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGA-ACTGGATTGAGGGTTGTAGCAGCA
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTG-CGTAGCA
* ** * * * ** **
15158882 GAATCGGCAGCACATAGAGGGAGACCCGATCGATCCCTGGCTTACGCATCCCGTGCCTCTGGCCG
771 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
* * * * * *
15158947 GTTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGTATATGGAGTTCATTCCCAGTGTAG
836 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * ** * * *
15159011 GCATACAAAGTTTATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTTCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15159076 CTTGGGCATGTGCTAGTGCCACATTTTTCTTCGCCGGGGTACCAT--------CA-C--CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15159130 ACCTGATCGGCGGCACTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
15159195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15159260 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15159325 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
* * *
15159389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
15159454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT-AAAAAGTAGAAAACGAGTCGTC
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA-TAGAAAACGAGTCGTC
15159518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15159583 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15159648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCTGTCTGCCCGCTCGTTTCATCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * **
15159713 GCTTCGGCATACAGAGTTCATTTCCAATCTAAGATC-AGACCAAACCGAGGGTTGCGGTAGCAGG
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGC-GTAGCAGG
* * * * * * * *
15159777 ATCAGCAGCATGCAGAGGGGGACCTGATCTATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGT
773 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGC
** *
15159842 TGAGCGCCCATACGCTCGTTTCATGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
15159904 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTACGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
15159969 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
15160034 ACATGACCGACGGCATTGGGGTTCCGTCGATC-GGGGGGCCAGGTGGGTGTGCACACATGATGTG
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
15160098 CGATGGGTGCTGGTACTTGGCGCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15160163 ACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15160228 TGGCACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGTG-TTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15160292 CGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15160357 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
15160422 GCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATCGTACGAATTTACAAGCCATAAAAATGTC
520 GCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
15160487 ATTAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTGTCGATCCACGGCTTGT
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15160552 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGTCTGGCCACTCGTTTCGTCGGTTGC
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG-C---CCGCTCGTTTCGTCGGTTGG
* * * * *
15160617 CTTAGGCATACTGAGTTCATTCCCAATCTAAGATC-AGACTGGACCGAGGCTTGCAGCAGCAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGC-GTAGCAGGA
* ** * * * * *
15160681 TCGACAGCAAACAAAGGGGGACCCGGCCTG-TCCCCGACTTGTGCATCCCACCCCTCTGGCCGAC
774 TCGGCAGCACGCAGAGGGGGACCCGACC-GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGC
* * * * *
15160745 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCTAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15160807 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** ** * *
15160872 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATTACCAGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15160937 ATCTGATCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGGACATGATGTG
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
15161002 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15161067 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC-GACCAGTAGCCATTAAAGTGTCTGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAA
*
15161131 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
15161196 GTGCATGCCAAAAAAAATACAAGGATCA---C-A-TAAGTTTGGGGCCAAAACGCTTTCTAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15161256 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGCCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15161321 TGCCATGAAACTTCACGTGAAGGCATT-AGAGACCATTATATGAATTTACAAGCCATAAAAATGG
519 TGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
15161385 CATTGGCATGAAGAAATACAAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTCG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * **
15161450 CGCATCCCATCTCTCTGGCCCGCACAGTGCCCG-CT---CGCCCGCTCG-TTCGTCAGTCAGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
15161510 AGGCATATGGAGTTCATTCGCA-TCCTCAGATC-AGACCGGACTGAGGGTTACCGTAGCAGGATT
713 AGGCATACGGAGTTCATTCCCAGT-CTAAGATCGAGACCGGACCGAGGGTT-GCGTAGCAGGATC
** * * * * * *
15161573 GATAGCACACAGAGGGGGACCCGGCCCATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGACTGA
776 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGA
15161638 GCGCCCGCACGCTCG-TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15161696 GCTTGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** * *
15161761 CTCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * * *
15161826 ACTTGACCGACGGCATTGGGGTTCTGGCGATCTGGGGGGCCGGGGGGTGTGTGCACATGATGTGT
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
15161891 GATGCGTACTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15161956 CCCCGTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15162021 GGGACAATTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAA-TTTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15162085 GCATCCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAACACCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
15162150 TTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15162215 CCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * **
15162280 TGTTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAT
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15162345 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG--C--CCGCCCGCTCGTTTCGTCGGTTGGCT
* * * ** ** * *
15162410 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTG-GACTGGATTGAGCATTGCTGCAGTAGGATC
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGC-GTAGCAGGATC
* * **
15162474 GGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCTACCCCTCTGGCCGGCTGA
776 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGA
* * *
15162539 GCGCCCGCACGCTTGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
841 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15162598 GCGTGCGGAGTTCATTCCCAGTCTACGATCGAACCAGACCGAGGGTTACAGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * ** * *
15162663 CTCGAGCATGTACTGGTGCCGTATTTTTCTTCGCTGGGGCACCATTACCGAAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
15162728 ACCTGATCGGCGGTATTAGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGGACATGATGTGC
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15162793 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15162858 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
15162894 GGCCCAAACT
Statistics
Matches: 9495, Mismatches: 1277, Indels: 519
0.84 0.11 0.05
Matches are distributed among these distances:
843 2 0.00
844 6 0.00
845 5 0.00
846 2 0.00
847 24 0.00
848 11 0.00
849 5 0.00
850 7 0.00
851 206 0.02
852 367 0.04
853 4 0.00
854 2 0.00
855 1 0.00
856 2 0.00
857 3 0.00
858 1 0.00
860 3 0.00
861 1 0.00
863 8 0.00
864 4 0.00
865 2 0.00
866 5 0.00
867 1 0.00
868 6 0.00
869 28 0.00
870 2 0.00
871 1 0.00
872 14 0.00
873 25 0.00
874 37 0.00
875 3 0.00
876 8 0.00
877 16 0.00
878 102 0.01
879 215 0.02
880 328 0.03
881 42 0.00
882 4 0.00
883 4 0.00
884 10 0.00
886 1 0.00
887 41 0.00
888 514 0.05
889 249 0.03
890 153 0.02
891 18 0.00
892 889 0.09
893 582 0.06
894 86 0.01
895 160 0.02
896 187 0.02
897 19 0.00
898 11 0.00
899 158 0.02
900 729 0.08
901 535 0.06
902 630 0.07
903 780 0.08
904 314 0.03
905 397 0.04
906 1 0.00
908 2 0.00
909 350 0.04
910 461 0.05
911 6 0.00
912 3 0.00
914 4 0.00
915 2 0.00
916 2 0.00
917 9 0.00
918 219 0.02
919 46 0.00
920 230 0.02
921 55 0.01
922 10 0.00
923 125 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGCGTAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15153595 original size:26 final size:26
Alignment explanation
Indices: 15153566--15153618 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15153556 TTTGACTTAG
*
15153566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15153592 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15153618 G
1 G
15153619 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15154497 original size:26 final size:26
Alignment explanation
Indices: 15154461--15154513 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15154451 GTTGACTTAG
15154461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15154487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15154513 G
1 G
15154514 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15157208 original size:26 final size:26
Alignment explanation
Indices: 15157179--15157231 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15157169 GTTGACTTAG
*
15157179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
15157205 GCATATGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
15157231 G
1 G
15157232 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:15158116 original size:26 final size:26
Alignment explanation
Indices: 15158080--15158132 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15158070 GTTGACTTAG
15158080 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15158106 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15158132 G
1 G
15158133 ATCGAATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15159909 original size:26 final size:26
Alignment explanation
Indices: 15159878--15159930 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15159868 GTTGACTTGG
*
15159878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15159904 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15159930 G
1 G
15159931 ATCGGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15160819 original size:26 final size:26
Alignment explanation
Indices: 15160783--15160833 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15160773 TGACTTAGGA
*
15160783 ATACGAAGTTCATTCCTAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
15160809 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
15160834 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Done.