Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 83 of 131
Found at i:15163873 original size:27 final size:26
Alignment explanation
Indices: 15163816--15163873 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
15163806 CTCTTTCCGA
***
15163816 AAAAAGTTTAAAAAATCCTGAACCGT
1 AAAAAGTTTAAAAAATCCTGAAAAAT
* *
15163842 AAAAAGTTTTAAAAATCGTGAAAAAT
1 AAAAAGTTTAAAAAATCCTGAAAAAT
15163868 AGAAAA
1 A-AAAA
15163874 TGATCGTCTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.57, C:0.09, G:0.12, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCCTGAAAAAT
Found at i:15164638 original size:26 final size:26
Alignment explanation
Indices: 15164594--15164644 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15164584 TGACTCAGGC
15164594 ATACGGAGTCAATTCCCAGTCTAAGG
1 ATACGGAGTCAATTCCCAGTCTAAGG
*
15164620 ATACGGAGTTC-ATTTCCAGTCTAAG
1 ATACGGAG-TCAATTCCCAGTCTAAG
15164645 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTCAATTCCCAGTCTAAGG
Found at i:15167035 original size:26 final size:26
Alignment explanation
Indices: 15166996--15167047 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15166986 GTTGACTTTG
* *
15166996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAATTCATTCCCAGTCTAA
*
15167022 GCATACGCAATTCATTCCTAGTCTAA
1 GCATACGCAATTCATTCCCAGTCTAA
15167048 TATCGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGCAATTCATTCCCAGTCTAA
Found at i:15169496 original size:26 final size:26
Alignment explanation
Indices: 15169467--15169519 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15169457 GTTGACTTAG
*
15169467 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15169493 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15169519 G
1 G
15169520 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15170883 original size:705 final size:717
Alignment explanation
Indices: 15169493--15170959 Score: 2174
Period size: 705 Copynumber: 2.0 Consensus size: 717
15169483 CCCAGTCTAA
* *
15169493 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15169558 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCAGAGCATCACCGAAGA
66 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCAT--CC--AG-AT--CCGAAGA
* * * * *
15169623 ACCTGACCGACGGCATTGGGGTTTCTATGATCGGGGGGACTGAGGGGGGTGTGCGCAAATGATGT
124 ACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGACTCAGGGGGGTGTGCGCAAATGATGT
*
15169688 GCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
189 GCGATGAGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15169753 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15169818 TGGGGACACTTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
319 TGGGGACACTTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATT
* * * *
15169883 TTGTGCATGCCAAAAAAAATACAAGGATCACGAATATCAGGTTTGGGGCCAAAACTCCTTCCGAA
384 TTATGCATGCCAAAAAAAATACAAGGATCACGAATACCAAGTTTGGGGACAAAACTCCTTCCGAA
* ** * *
15169948 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAAATCGTGAAAAATAGAAAACGAGTCG
449 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCCAAAAATCATAAAAAATAGAAAACGAGTCG
15170013 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
15170078 GGAATCGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCT
579 GGAATCGGCACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** *
15170143 TGCGCATCCCGTGTTTCTGGCCGACGTAGTGCCCGCCCGCCCA-CCCGGCTGTTCGTTTCGTCAG
644 TGCGCATCCCATCTTTCTGGCCGACGTACTGCCCGCCCGCCCACCCCACCCGTTCGTTTCGTCAG
*
15170207 TTGGCTTAG
709 TTGGCATAG
* * *
15170216 GCATAC-GATGTTCATTCCCAGTCTAAGAT-GTTACTGGATCGAGGGTTGCGGCAGCACATTCTG
1 GCATACGGA-GTTCATTCCCAGTCTAAGATCG-GACTGGACCGAGGGTTGCGGCAGCACATGCTG
*
15170279 GGCTCAGCCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCAT-C-G-T-CGGAGAACCT
64 GGCTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCCAGATCCGAAGAACCT
* * * *
15170339 GACCGCCAGCATTGGGGTTCCGGCGATCGGGGGG-C-CA-GGGGGTGTGTGCACAT-ATGTGCGA
128 GACCGACAGCATTGGGGTTCCGACGATCGGGGGGACTCAGGGGGGTGTGCGCAAATGATGTGCGA
* * *
15170400 TGAGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATC
193 TGAGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
15170465 CGCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
15170530 GACAC-TTTTTTCAAATGGTCAC-AAAATGTTGTACACTTCGAGTTTTTAGCTGAATTATTTTAT
323 GACACTTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTAT
* * * ** * *
15170593 GCATGCCAACATAAATGCAAGGATCACGTCTACCAAGTTTGGGGACAAAATTCCTTCTGAAAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGAATACCAAGTTTGGGGACAAAACTCCTTCCGAAAAAA
* * *
15170658 TTTTAGAAAATCCCGAACCACAAAAGGTTT-TAAAAATCATAAAAAATAGAAAACGAGTCGTCTT
453 TTTTAAAAAATCCCGAACCACAAAAAGTTTCCAAAAATCATAAAAAATAGAAAACGAGTCGTCTT
*
15170722 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
* *
15170787 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TCGGCACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
15170852 CATCCCATCTTTTTGGCCGGA-GTACTGCCCGCCCGCCCACTCGCCCACCCGTTCGTTTCGTCAG
648 CATCCCATCTTTCTGGCC-GACGTACTGCCCGCCCGCCCA--C-CCCACCCGTTCGTTTCGTCAG
15170916 TTGGCATAG
709 TTGGCATAG
*
15170925 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
15170960 AGACTGAGCT
Statistics
Matches: 675, Mismatches: 59, Indels: 34
0.88 0.08 0.04
Matches are distributed among these distances:
705 189 0.28
706 120 0.18
707 17 0.03
708 137 0.20
709 69 0.10
710 3 0.00
711 1 0.00
712 37 0.05
715 1 0.00
717 1 0.00
720 1 0.00
722 5 0.01
723 94 0.14
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCCAGATCCGAAGAACCTGAC
CGACAGCATTGGGGTTCCGACGATCGGGGGGACTCAGGGGGGTGTGCGCAAATGATGTGCGATGA
GTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTATGCA
TGCCAAAAAAAATACAAGGATCACGAATACCAAGTTTGGGGACAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCACAAAAAGTTTCCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATCG
GCACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCATCTTTCTGGCCGACGTACTGCCCGCCCGCCCACCCCACCCGTTCGTTTCGTCAGTTGGCAT
AG
Found at i:15171104 original size:26 final size:26
Alignment explanation
Indices: 15171074--15171124 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15171064 TGACTTAGGT
*
15171074 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACGAAGTTCATTCCCAATCTAAGC
*
15171100 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAATCTAAG
15171125 ACCAAACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGC
Found at i:15172451 original size:707 final size:693
Alignment explanation
Indices: 15171098--15172476 Score: 2053
Period size: 707 Copynumber: 2.0 Consensus size: 693
15171088 CCCAATCTAA
*
15171098 GCATACGAAGTTCATTCCCAGTCTAAGACCAAACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGACCAAACCAGACCGAGGGTTACGACAGCACATGCTGGG
* * **
15171163 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAAAACCTGACCGAC
66 CTCGGGCAAGTGCTGGTGCCACAATTTTCTTCACCAGGGCACCATCGCCGGAAAACCTGACCGAC
*
15171228 GGCATTGGGGTTCCGAGTAATCGGAGGGACCAGGGGTGTGCACACATGATGTGCGATGGGTGCTG
131 GGCATTGGGGTTCCGAG-AATCGGAGGGACCAGGGGTGTGCACACATGATGAGCGATGGGTGCTG
* * *
15171293 GTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
195 GTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAG
* *
15171358 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTT
260 AGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
15171423 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGCATGCCAACAA
325 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGCATGCCAAAAA
* * * *
15171488 AAATACAAGGATCATGTCAACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
390 AAATACAACGATCACGTCAACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTAAAAAAATC
*** * * *
15171553 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTC
455 CCGAACAACAAAAACTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
* *
15171618 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAGAA
520 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGAAGAA
* * * *
15171683 ATATAAAGATGTGCCTAAACACACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTCTCTC
585 ATATAAAGATGTGCCTAAACACACATACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
15171748 TGGCCGGCGTAGTGCCCGCCCGTTCATTTCGTTGGTTGGCTTAG
650 TGGCCGACGTACTGCCCGCCCGTTCATTTCGTTGGTTGGCTTAG
* * *
15171792 GCATACTG-AGTTCATTCCCAGTCTAAG-CTCAGACCAGACCGAGGGTTGCGGCAGCACATGCTG
1 GCATAC-GAAGTTCATTCCCAGTCTAAGAC-CAAACCAGACCGAGGGTTACGACAGCACATGCTG
* * *
15171855 GGCTTGGGCAAGTGCTGGTGCCAGAATTTTCTTCACCGGGGCACCATAGTCGGAGCATCGCTAGA
64 GGCTCGGGCAAGTGCTGGTGCCACAATTTTCTTCACCAGGGCACC--A-TC---GC--CG---GA
* * * * ** ** *
15171920 GAACCTGACCGACGGCATTGGGGTTCTGACG-ATCGGGGGGGCTGGGGGGTGTGCGTACTTGATG
118 AAACCTGACCGACGGCATTGGGGTTCCGA-GAATCGGAGGGAC-CAGGGGTGTGCACACATGATG
15171984 AGCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTC
181 AGCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTC
*
15172049 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
246 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15172114 TTGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCTGAGTTTTTAGCTGAATTTTT
311 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTT
* * * * *
15172179 TTGTGCATGCCAAAAAAAATATAACGATCACGTCTACCATGTTTGGGGCTAAAACACCTTCTAAA
375 TTG-GCATGCCAAAAAAAATACAACGATCACGTCAACCAAGTTTGGGGCCAAAACACCTTCCAAA
*
15172244 AAAATTTAAAAAAATCCCGAACAACAAAAACTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGT
439 AAAATTTAAAAAAATCCCGAACAACAAAAACTTTCAAAAATCATAAAAAATAGAAAATGAGTCGT
15172309 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAG
504 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAG
* * * *
15172374 GCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCATATACGACCCCATCGATCCACGGCTT
569 GCATTGGCATGAAGAAATATAAAGATGTGCCTAAACACACATACCACCCCATCGATCCACGGCTT
15172439 GCGCATCCCGTCTCTCTGGCCGACGTACTGCCCGCCCG
634 GCGCATCCCGTCTCTCTGGCCGACGTACTGCCCGCCCG
15172477 CCCGCCCGCC
Statistics
Matches: 610, Mismatches: 58, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
693 1 0.00
694 93 0.15
695 1 0.00
696 1 0.00
697 2 0.00
700 2 0.00
702 2 0.00
704 9 0.01
705 210 0.34
706 24 0.04
707 265 0.43
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (693 bp):
GCATACGAAGTTCATTCCCAGTCTAAGACCAAACCAGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCAAGTGCTGGTGCCACAATTTTCTTCACCAGGGCACCATCGCCGGAAAACCTGACCGAC
GGCATTGGGGTTCCGAGAATCGGAGGGACCAGGGGTGTGCACACATGATGAGCGATGGGTGCTGG
TACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGCATGCCAAAAAA
AATACAACGATCACGTCAACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTAAAAAAATCC
CGAACAACAAAAACTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGAAGAAA
TATAAAGATGTGCCTAAACACACATACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTACTGCCCGCCCGTTCATTTCGTTGGTTGGCTTAG
Found at i:15172706 original size:26 final size:26
Alignment explanation
Indices: 15172670--15172722 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15172660 GTTGACTTAG
*
15172670 GCATACAGAGTTGACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
* *
15172696 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
15172722 G
1 G
15172723 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:15173550 original size:903 final size:897
Alignment explanation
Indices: 15171792--15174356 Score: 3682
Period size: 904 Copynumber: 2.8 Consensus size: 897
15171782 GTTGGCTTAG
* * *
15171792 GCATACTGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15171857 CTTGGGCAAGTGCTGGTGCCAGAATTTTCTTCACCGGGGCACCATAGTCGGAGCATCGCTAGAGA
64 CTTGGGCATGTGCTGGTGCC-GATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCTAGAGA
* * * * * * *
15171922 ACCTGACCGACGGCATTGGGG-TTCTGACGATCGGGGGGGCTGGGGGGTGTGCGTACTTGATGAG
128 ACCTGACCGGCGGCATTGGGGTTTC-GGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
15171986 CGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
15172051 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTTTGAATT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15172116 GGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCTGAGTTTTTAGCTGAATTTTTTT
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTT
* * * * *
15172181 GTGCATGCCAA-AAAAAATATAACGATCACGTCTACCATGTTTGGGGCTAAAACACCTTCTAAAA
385 GTGCATGCCAACAAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAA
* ** * * *
15172245 AAATTTAAAAAAATCCCGAACAACAAAAACTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTC
448 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15172310 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
15172375 CATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCATATACGACCCCATCGATCCACGGCTTG
578 CATTGGCATGCAGAAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15172440 CGCATCCCGTCTCTCTGGCCGACGTACTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTG
642 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
15172505 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGGAGGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGA
* * * *
15172570 TCGGCAGCACGCAGAGGGAGACCTGACCGATCCCCCGCTTGCGCATCCCGTCCTTCTGGCCGGCT
772 TCGGCAGCACGCAAAGGGAGACCTAACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
15172635 GAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTGACTCCCAGTCTAA
837 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCACTCCCAGTCTAA
* *
15172696 GCATACAGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATAC-GAGTTCATTC-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
**
15172761 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCT-GAG
64 CTTGGGCATGTGCTGGTGCCG-ATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG-CTAGAG
* *
15172825 AACCTGACCGGCGACATTGGGGTTTCGGCAATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGT
127 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
* *
15172890 GCGATGGGTGCTGGTACTTGGCCCATATATTGGCCTCCTATCCCTCATCAATCCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTTGAGAACTCA
*
15172955 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15173020 TGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
15173085 GTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
385 GTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAA
* * *
15173150 ATTTTAAAAAATCTCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTT
450 ATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15173215 GCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15173280 TTGGCATGCAGTAATATGAAGATGTGCTTAAACACACCTACCACCCTATCGATCCACAGCTTGCG
580 TTGGCATGCAGAAATATGAAGATGTGC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
15173345 CATCCCGTCTCTCTGGCCAACGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
644 CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** *
15173410 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGTAGCAGTATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATC
15173475 GGCAGCACGCAAAGGGAGACCTAACCGAT-CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
774 GGCAGCACGCAAAGGGAGACCTAACCGATCCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * * *
15173539 AGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCACTCCCAGTCTAA
* * * * *
15173599 GCATACGCAATTCATTCCTAGTCTAATATCGGACCGGACCGAGAGTTACGGCAGCACATGCTGGA
1 GCATACG-AGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
15173664 ATTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCTGAACATCGCTAGAGA
64 CTTGGGCATGTGCTGGTGCCG-ATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCTAGAGA
* * * *
15173729 ACCTGACCGGTGGCATTTGGGTTCCAGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGT
128 ACCTGACCGGCGGCATTGGGGTTTCGGCGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * **
15173794 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCTCATCAAACCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTTGAGAACTCA
* *
15173859 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCAGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15173924 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ***
15173989 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAA
385 GTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAA
* * ** *
15174054 GTTTTAAAAAATCCCGAA-TCGCAAAAAGTTTCAAAAATTGTGAAAAATAGCGAACGAGTCATCT
450 ATTTTAAAAAATCCCGAACT-GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15174118 TGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
15174183 ATTGGCACACAGAAATATGAAGATGTGCCAGAACCCACCTACCACCCTATCGACCCACGGCTTGC
579 ATTGGCATGCAGAAATATGAAGATGTGCTA-AACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
15174248 GCATCCTGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCGTCCGTCCGCCCGTCCGCCCGCTCGT
643 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCA------C--CCGTCCG--C--CCGCCCGCTCGT
* *
15174313 TTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCACTCTAAG
696 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15174357 GATACGGAGT
Statistics
Matches: 1492, Mismatches: 140, Indels: 46
0.89 0.08 0.03
Matches are distributed among these distances:
902 10 0.01
903 550 0.37
904 675 0.45
905 195 0.13
910 1 0.00
912 7 0.00
914 1 0.00
916 53 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
TGGGCATGTGCTGGTGCCGATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCTAGAGAACC
TGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTA
AAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGCAGCA
CGCAAAGGGAGACCTAACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
CACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCACTCCCAGTCTAA
Found at i:15173612 original size:26 final size:26
Alignment explanation
Indices: 15173573--15173624 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15173563 GTTGACTTAG
* *
15173573 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAATTCATTCCCAGTCTAA
*
15173599 GCATACGCAATTCATTCCTAGTCTAA
1 GCATACGCAATTCATTCCCAGTCTAA
15173625 TATCGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGCAATTCATTCCCAGTCTAA
Found at i:15174368 original size:26 final size:26
Alignment explanation
Indices: 15174332--15174382 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15174322 TAGCTTAGGC
15174332 ATACGGAGTTCATTCCCACTCTAAGG
1 ATACGGAGTTCATTCCCACTCTAAGG
*
15174358 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCACTCTAAG
15174383 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCACTCTAAGG
Found at i:15176016 original size:26 final size:26
Alignment explanation
Indices: 15175980--15176032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15175970 GTTGACTTCG
* *
15175980 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
15176006 GCATAAGGAGTTCATTCCCGGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
15176032 G
1 G
15176033 ATCCGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:15179537 original size:26 final size:26
Alignment explanation
Indices: 15179501--15179553 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15179491 GTTGACTTAG
15179501 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15179527 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15179553 G
1 G
15179554 ATAAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15179979 original size:895 final size:891
Alignment explanation
Indices: 15178633--15186687 Score: 6758
Period size: 895 Copynumber: 9.1 Consensus size: 891
15178623 GATGACTTAG
* **
15178633 GCATACGGAGTTCATTCCCAGTCTAACATCAAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAACCAGACCGAGGGTTGCGATAGCACATGCTGGG
* * ** *
15178698 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCATCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGA
* * * *
15178763 ACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTTTGCGCACATAATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
15178828 GATGGGTACTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
15178893 -CCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15178957 GGGACACTTTTTTCAAATGGTCACACAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15179022 GCATGCCAACAAAAGTACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTAC-AAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
*
15179087 TTTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
454 TTTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTG
* *
15179152 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATTGTAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAT
15179217 TGGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTACGC
584 TGGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTACGC
* * *
15179282 ATCCCGTCTCTCAGGCCGGCATAGTGCCCGCACG-CCCGCTCGTTTCATCGGTCGGCATAGGCAT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCCCGCTCGTTTCATCGGTTGGCATAGGCAT
15179346 ATGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGTAGTAGGATCAGTACCAC
713 ATGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGTAGTAGGAT-AGTACCAC
* * * * *
15179411 GTAGAGGGGGACCCGGCCGATCCCCAGCTCGCAGATCCCACCCCTCTGGCCAGCTGAGTGCCCGT
777 GTAAAGGGGGACCCGGCCGATCCCCGGCTCGC-GATCCCGCCCCTCTGGCCAGCTGAGCGCCCGC
*
15179476 TCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15179527 GCATATGGAGTTCATTCCCAGTCTAAGATAAGACCGGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATAA-ACCAGACCGAGGGTTGCGATAGCACATGCTGGG
* * ** *
15179592 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAACAAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGA
* * * * * *
15179657 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTACGGAAAT-ATGTA
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
15179721 AGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCGTCATCATACCTCAAAAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
15179786 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15179851 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
15179916 TGCATGCCAACAAAAATAGAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCCACCAAAAAT
389 TGCATGCCAACAAAAATACAAGGATCACGTCTAC-AAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
15179981 ATTTTAAAAAATCTTGAACCCCAAAAAGTTTTAAAAATTGTGAAAAATACAAAACGAGTCATCTT
453 ATTTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTT
15180046 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
15180111 TTGGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTACG
583 TTGGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTACG
* * * * *
15180176 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCGACCTGCTCATTTCATCGGTTAGCATAGGCAT
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCCGCTCGTTTCATCGGTTGGCATAGGCAT
* * * * * * * * *
15180241 ACGGAGTTCAATCCTAGTGTAAGATCTAACCAAACTGAGGGTTGCGGTAGTAGGATTGGTACCAC
713 ATGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGTAGTAGGA-TAGTACCAC
* ** * * * *
15180306 GCAAAGGGGGACCCGATCGATCCCCGGCTTACGC-CTCCCGCCCCTCTGGTCGGTTGAGCGCCCG
777 GTAAAGGGGGACCCGGCCGATCCCCGGC-T-CGCGATCCCGCCCCTCTGGCCAGCTGAGCGCCCG
** * *
15180370 CACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
840 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
15180422 G-AT-C-G-G---A---CCA--C----AT---------CGAGGGTTGCAATAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATAAACCAGACCGAGGGTTGCGATAGCACATGCTGGGC
* * ** * * ** *
15180462 TCGGGCATGTGCTGGTGCCGTATTATTCTTCACCGGGGCACCCTTACCGGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGAA
* *
15180527 CCTGACCGATGACATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* ** **
15180591 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATTTCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
15180656 CCCCTTAAAGAGCATTTAAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGT
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
15180721 GGACAATTTTTTCAAATGGTCCCAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
15180786 CATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGTGGCCAAAACTCTTTCCAAAAAATT
391 CATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * * * *
15180851 TTTAAAACATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC-GCTTGC
455 TTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGC
* * *
15180915 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
* * * *
15180980 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCA
585 GGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTACGCA
* * * * *
15181045 TCCCATCCCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
650 TCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG-CCG-CC--CCGCTCGTTTCATCGGTTGGCAT
*
15181110 AGGCATATGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGACCGAGGGTTGTGGCAGTAGGATAG
707 AGGCATATGGAGTTCATTCCCAGTCTAAGATCCA-ACCAGACCGAGGGTTGTGGTAGTAGGATA-
* * * * * *
15181174 GCAGCACATAAAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCCGCTGAG
770 GTACCACGTAAAGGGGGACCCGGCCGATCCCCGGCTCGCG-ATCCCGCCCCTCTGGCCAGCTGAG
* * * * *
15181239 CACCCACAAGCTCGTTTCGTGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
15181297 GCATACGGCGTTCATTCCCAATCTAAGATCGGACCAAACTGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAACCAGACCGAGGGTTGCGATAGCACATGCTGGG
* * * * * **
15181362 CTAGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCAGGGCACGATCACCGGAGCATCAATGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGA
* * * * ** * * * * *
15181427 ATCTAACCGGCGGCATTGGGCTTCCGATGATTGGGGGG-TGGAGGGGCTGTGCACACATGATTTG
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGG-GGGGGTGTGCGCACATGATGTG
* * * **
15181491 TGATTGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
15181556 TCCCCCTTAAAGAGCGTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * ** * ***
15181621 GGGGACACTTTTTTCAAATGGTCAC-AACT-TTGCCAATAAAATGACAAG-GATCACGCT-ACCA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTG----TACACT-TCGAGTTTTTA-GCTGAATT
** * * * * * ** ** * * * * * ** *
15181682 AGTTTG-G--GGCCAA-AACTATTGCCAA-AAAAATTTTTAAAAATCTCGAACCGTAAAAAGT--
383 TTTTTGTGCATGCCAACAA-AAAT-ACAAGGATCACGTCTACAAGTTTGGGGCC---AAAACTCC
* * * * * ** * *** * ***
15181740 TT---TAAAAATTGTGAAGAAT--AGAA-AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
443 TTCCAAAAAAATTTTAAAAAATCCTGAACCCCAAAAAGT-TT--CA--AAA-AT--CGTGAAAAA
* ** * * * * * * * * **
15181799 T--TAAGGGA-CCA--TTG-TAT-AAA-TTTAC---AAGCCAT-A---A-CA---AAGGCATTGG
500 TAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * ** ** ** * *** * * * ** ** * *
15181845 CATG-CAGAAATATGAAG-ATGTGCCTAAACCCACCTATCACCCTATCGATCCA-CGGCTTGCGC
565 CAAGCCACAAAAATG--GCAT-TGGC-ATGCAGAAATATGAAGATGTGGCTAAACCTACCTAC-C
* ** * * * * ** * ** * * * ****
15181907 ATCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCCGCCTGCTC-GTTTCGTCG-ATTGGCTTAGGC
625 A-CCC-TATCGAT-CCACGGCTTA-CG-CATCCCGTCT-CTCTG-GCCGGCGTAGTGCCCGCCGC
** ** * * * * * * *** *
15181969 ATACG-AAG-TTCATTCCCAGTCTAAG-ATCAGACCAGACTGAGGGTT--GTGATAG--TAGGAT
683 -CCCGCTCGTTTCA-T--CGGT-T-GGCAT-AG-GCATA-TG-GAGTTCATTCCCAGTCTAAGA-
* * * * ** *** * **** * * **
15182027 TGGC-AGCACACAGA-GG--G-GG-ACCCAGCCGA-T-CCCCG-GCTTGCGCATCCC-GCCCCTC
737 T-CCAACCAGACCGAGGGTTGTGGTA-GTAGGATAGTACCACGTAAAGGGGGA-CCCGGCCGATC
* * * ** * ** * * * * * *
15182082 TGGCCGGCTGAGCGCTCGCACGCTCGTTTTGTGGGTTAACTTAGC-CATACGGA-GTTC-ATTC-
799 --CCCGGCT-CGCGATC-C-CGC-C--CCTCT-GGCCAGCTGAGCGC--CCGCACGCTCGTTTCG
*** *
15182143 CCAG-T--C-TAAGCATACGGAGTTCATTCCCAG--T--
853 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
15182174 -C-TA---AG---------A-TC--AG----ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATAAACCAGACCGAGGGTTGCGATAGCACATGCTGGGC
* * ** * ** ** *
15182218 TTGGGCATGTGCTGGTGCCGCATTTTACTTCACCGGGGTACCATCGTCGGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGAA
** * * * * * * *
15182283 CCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGCTGGGGGGTGTACGTACATGATGTACG
131 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * **
15182348 ATGGGTGCTGGTGCTTGGCCCTTACATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* *
15182413 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGGAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
15182478 GGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** * *
15182543 CATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGACCAAAAAACCTTCCGAAAATAT
391 CATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
** ** * *
15182608 TTTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGC
* * *
15182673 CATGAAACTTCACGTGAAGGCTTATGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
* * * *
15182738 GGCATGTAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
585 GGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTACGCA
* * * * *
15182803 TCCCGTCTCTCTGGCTGGCGTAGTGCCCAGCCGCCCGCTTGCCCG-CTCAT---TT--CGTCGG-
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCC-C--GCTCGTTTCATCGGTTGGCATAGGC
* ** * * * * * * *
15182861 -T-T-G-G---ATTCCTAGTCTAAGATCGGACTAGACTGAGGGTTGTGGCAGCAGGATTGGCAGC
711 ATATGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGTAGTAGGA-TAGTACC
* * * * * * * * * *
15182919 ATGCAGAA-GGGGACCCGACCGATTCTCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTAAGCGCC
775 ACGTA-AAGGGGGACCCGGCCGATCCCCGGCTCGCG-ATCCCGCCCCTCTGGCCAGCTGAGCGCC
* *
15182983 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAA
838 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15183037 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAAACTGAGGGTTGTGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAACCAGACCGAGGGTTGCGATAGCACATGCTGGG
* * ** * **
15183102 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGA
* * *
15183167 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTACGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
15183231 TGATGGATGTTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
15183296 ACCCCCTTAAA-AGGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 ACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15183360 TGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACAC-TCGAGTTTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
15183424 GTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** *
15183489 AATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
452 AATTTTAAAAAATCCT-GAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATC
* * *
15183553 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAAGGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
* * * * * * * *
15183618 TAGTGGCATGTAGAAATACGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTA
* * ** *
15183683 GGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTTGTCGGTTGGCTT
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CG--C-CCCGCTCGTTTCATCGGTTGGCAT
* * * * * *
15183748 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGATC-GAACTGAGGGTTATGGCAGCAGGATC
707 AGGCATATGGAGTTCATTCCCAGTCTAAGATCCA-ACCAG-ACCGAGGGTTGTGGTAGTAGGAT-
* * * * * * * * * ** * *
15183811 GGCAGCACGCATAA-GGGGACCCGACTGATCCTCGGCTTGCGCATCTCTTCTCTCTAGCC-GACT
769 AGTACCACGTA-AAGGGGGACCCGGCCGATCCCCGGCTCGCG-ATCCCGCCCCTCTGGCCAG-CT
* ** *
15183874 GAGTGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAG
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
15183935 GCATACGAAGTTCTTTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAACCAGACCGAGGGTTGCGATAGCACATGCTGGG
** * * * *
15184000 CTAAGGCATGTGCTGGTGCCGCATGTTTCTTCATCGAGGCACCAT---C---G--T---CGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGA
* * ** * *
15184054 GCCTGACCGACAGCATTGACGTTCCGGCGATCGTGGGGTC-GGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
15184118 GATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGATCTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * * *
15184183 CCCTCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGTCAGTAGCCATTCAAGTGTCTGGAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15184248 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGGTTGAATTGTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTTG
* * * * *
15184312 TGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAACTCCTTCCGAAAGA
389 TGCATGCCAACAAAAATACAAGGATCACGTCT-ACAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* ** * *
15184377 ATTTTAAAAAATCCCGAACCGTAAAATA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCTGAACCCCAAAA-AGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCT
* * *
15184441 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGT
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
* * * ** * *
15184506 ATTGGCATCCAGAAATATGAAAGATATGCCTAAACCCGCCTA-CACCCTA-CGAT-CATGGCTTG
582 ATTGGCATGCAGAAATATG-AAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTA
* * * * * * *
15184568 CGCATCTCGTCTCTCAGGCCGACATAGTGCCCGCCTGCCTGCCCACCCGCTCATTTCGTCGGTTT
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCC-G--C-CCCGCTCGTTTCATCGGTTG
* * * * *** * * **** *
15184633 GCTTAGGCATACGGAGTTCATTTCCAATCTAAGATTGGATCAGACTGAGGGTTAACATAGCAGGA
703 GCATAGGCATATGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGTAGTAGGA
* * * * * * * * **
15184698 CT-G-ACAGCACGCAGAGGTGGACCCGGCCGATCCTCGGCTTGCGCATACCGCCCTTCTAGCTGG
768 -TAGTAC--CACGTAAAGGGGGACCCGGCCGATCCCCGGCTCGCG-ATCCCGCCCCTCTGGCCAG
* *
15184761 CTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * ** *
15184824 GCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGATTGCGACGGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAACCAGACCGAGGGTTGCGATAGCACATGCTGGG
* * ****
15184889 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGTGCACCATCACCAGAGCATCGTGGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGA
*
15184954 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGTC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
15185018 CGATGGGTACTAGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
15185083 ACCCCCTTAGAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15185148 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15185213 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** ** * * *
15185278 ATTTTAAAAAAT-CTCGAA-CCGTAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCT-GAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCT
*
15185341 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-ATAAAATGG
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACA-AAAATGG
** * * * * * * * * *
15185405 CATTTTCACGTAGAAAAATGAAGATGTGCCGAAACCCACCTACCACCCTAACGATCCACGACTTG
581 CATTGGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTA
* * * * * **
15185470 CGAATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGTTT
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCG--C-CCCGCTCGTTTCATCGGTTGGCAT
* ** * *** ** * *
15185535 AGGCATACGGAGTTCATTCCTTGTCTAAGAT-CAGACCAGACTGAGGGTTACAGTACCAAGATGG
707 AGGCATATGGAGTTCATTCCCAGTCTAAGATCCA-ACCAGACCGAGGGTTGTGGTAGTAGGAT-A
* * * * * * * *
15185599 GTAGCACGCAGAGGGGGACCCGACCGATCGCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGGA
770 GTACCACGTAAAGGGGGACCCGGCCGATCCCCGGCTCGCG-ATCCCGCCCCTCTGGCCAGCT-GA
* * *
15185664 GCGGCCCCCACGCTCGTTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
833 GC-GCCCGCACGCTCGTTT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
15185725 GCATACGAAATTCATTCACAGTCTAAGATCGGACCGGACCGAGGGTAGCGACAAGCAGCATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAACCAGACCGAGGGTTGCGA-TAGCA-CATGCTG
* * ** *
15185790 GGCTTGGGCATGGTGGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAAGCATC-GC
63 GGCTCGGGCAT-GT-GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGG-AGCATCAAC
* * * * * ** *
15185854 TGGAGAACCTG-CTGGCCGCATTGGGG-TCCGAGCGATCGGGGGGCTGTGCGCACATGATGTTCG
125 -AGAGAACCTGACCGACGGCATTGGGGTTCCG-GCGATCGGGGGGCCG-G-G---GGGGTG-T-G
* * **
15185917 CACAACATGATGTGTGATGGGTGCTGGTA-TTTTCCCTTATATTGGCCCCCTATCCCTCATCAAA
181 CGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
15185981 CCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGA-TTTACA-GTTTGCTGCCAGTAGCCATT
245 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
15186043 AAAG-GATCTAAAATGTGGACACTTTTTTCAAATGTTCAC-AAATCTTGTACAACTTCGAGTTTT
310 AAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAG-TTT
15186106 TTAGCTGAA-TTTTTT-TGCAT--CAACAAAAATACAAGGATCACGTCTACCAAAGTTTGGGAG-
372 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-C-AAGTTTGGG-GC
* * **** * *
15186166 CAAAACTCCTGTCCAAAAAAATTTTACAAAATCCCGAATTGTAAAAACTTTCCAAAATCGTGAAA
434 CAAAACTCCT-TCCAAAAAAATTTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTGAAA
* *
15186231 AAT-AAAAACGA-TCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAA-GGACCATTGTATGAA-T
498 AATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * ** * * *
15186292 TACAAGCCATAAAAATGGCATTAGCACACAGAAATATTAAGATGT-GCGTAAA-CAACCTATC-C
563 TACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGC-TAAACCTACCTACCAC
* * ** *
15186354 CCTATCGATCCACGGCATTGCGCATCCCGTC-CTCT-G--TG-GTA-T-CCCG--GCTCTGGCGC
627 CCTATCGATCCACGGC-TTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGC-CCCGCTC
* * * *
15186410 ATTTCA----TTGGC-TAGGC--ACGAAGTTCATTCCCAGTCTAGGAT-CAGACCAGACCGAGGG
690 GTTTCATCGGTTGGCATAGGCATATGGAGTTCATTCCCAGTCTAAGATCCA-ACCAGACCGAGGG
* * * * * * * * ** * *
15186467 TTGTGGCAGCAAGATCG-ACAGCATGCAGAGAGGGACCCGATCGATCCCCTGCTTGCGCATCCCG
754 TTGTGGTAGTAGGATAGTAC--CACGTAAAGGGGGACCCGGCCGATCCCCGGCTCGCG-ATCCCG
* * * * * * *
15186531 CCCCTCTGGCCGGCAGAGTGCCCGTACGCTCGTTTCATTGGTTGAGTTAGGCATACGGAGTTCAT
816 CCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
15186596 TCCCAGTCTAA
881 TCCCAGTCTAA
* * * * ** * *
15186607 ACATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAAATGAGGGTTGCGGTAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAACCAGACCGAGGGTTGCGATAGCACATGCTGGG
15186672 CTCGGGCATGTGCTGG
65 CTCGGGCATGTGCTGG
15186688 CTCCGTATTT
Statistics
Matches: 5835, Mismatches: 1019, Indels: 630
0.78 0.14 0.08
Matches are distributed among these distances:
852 13 0.00
853 30 0.01
854 25 0.00
855 277 0.05
856 25 0.00
857 25 0.00
858 5 0.00
859 45 0.01
860 9 0.00
861 15 0.00
862 12 0.00
863 1 0.00
864 2 0.00
865 8 0.00
866 6 0.00
867 172 0.03
868 302 0.05
869 114 0.02
870 7 0.00
871 21 0.00
872 12 0.00
873 12 0.00
874 11 0.00
875 169 0.03
876 3 0.00
877 2 0.00
878 8 0.00
879 14 0.00
880 24 0.00
881 32 0.01
882 88 0.02
883 29 0.00
884 312 0.05
885 440 0.08
886 222 0.04
887 294 0.05
888 46 0.01
889 280 0.05
890 14 0.00
891 10 0.00
892 22 0.00
893 7 0.00
894 210 0.04
895 601 0.10
896 11 0.00
897 14 0.00
898 371 0.06
899 36 0.01
900 184 0.03
901 489 0.08
902 204 0.03
903 47 0.01
904 42 0.01
905 101 0.02
906 59 0.01
907 52 0.01
908 48 0.01
909 88 0.02
910 21 0.00
911 20 0.00
912 50 0.01
913 22 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAAACCAGACCGAGGGTTGCGATAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAACAGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTACGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCCGCTCGTTTCATCGGTTGGCATAGGCATATG
GAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGTAGTAGGATAGTACCACGTAA
AGGGGGACCCGGCCGATCCCCGGCTCGCGATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15180794 original size:868 final size:866
Alignment explanation
Indices: 15176006--15186606 Score: 10793
Period size: 868 Copynumber: 12.0 Consensus size: 866
15175996 CCCAGTCTAA
* * * **
15176006 GCATAAGGAGTTCATTCCCGGTCTAAGATCCGACCAGATGGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
15176071 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGAACCATCATCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * *
15176136 ACCTGACCGGTGGCTTTGGGGTTCCAGCGATCGGGGGGACGGGGGGTGTGTGCACATGATGTGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * * *
15176201 ATGGGTGCTGGTACTTGGCCCTTATAATAGCCCCCTATCCTTTATCAAACCTGGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15176266 CCCCTTAAAGAGCATTTGAAATTCTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
15176331 TGACACTTTTTTCAAATGATCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** * *
15176396 CATGCCAAAAAAAATACAAGGATTACGTCTAAAAAGTTTTGGGCCAAAAATCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAT
* * *
15176461 TTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCATGC
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
15176526 CATTAAACTTCACATGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
15176591 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGGTTGCGAA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
15176656 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCTCATTTCGTCGGTTGGCTTAGGCATAC
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATAC
* ** * * * * * * * *
15176721 GGAGTTCATTCCTAGTCTAAGATTGGATC-GAGCAGTGGGTTGTGGCAGTAGGATCGGTAGGACA
715 GGAGTTCATTCCCAGTCTAAGA-TCAACCAGA-CTGAGGGTTGTGGTAGTAGGATTGGCAGCACG
** * * ** * * *
15176785 TGGAGGGTGACCAGGTCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGACTGAGCGCCCGCA
778 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
15176850 CGCTCGTTTCGT-GGCTGAACTTAG
843 CGCTCGTTTCGTGGGTTG-ACTTAG
* * * * *
15176874 GCATACGGTGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * **
15176939 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * * *
15177004 ACCTAACTGACGGCATTGGGGTTCCAGCGATTGGGGGGTCGGGGGGTGTGCGCACAAGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15177069 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15177134 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAATGTTTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
15177199 GGACATTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTCTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
15177264 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAT
* * ** * * *
15177329 TTTAAAAAAGCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAAGAGAAAATGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
15177394 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15177459 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
15177524 TCTCGCCTCTCTAGTCGGTGTTGTGCCCGCCCGCCCGTCCGCCCGTCCGCCCGCTCGCCAGCTCG
650 TC-C-CGTCTC---TC-----TG-G-CCG---G--CGT-----AGT--GCCCGCCCGCCTGCTCA
* * * * ** *
15177589 TTTCGTTGATTGGTTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAAGGTT
691 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCAGACTGAGGGTT
* * * * * * * * **
15177654 ATAGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGAACACTAGCTTGCGCATCCCGCCC
755 GTGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * *
15177719 CTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
820 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * ** *
15177766 GCATACGGAGTTCATTCCCAGTCTGAGATCGGATCGGACCAAGGGTTGCGAAAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
** *
15177831 CTC-GGCATGTGCTGGTGTTGTATTTTTCTTCGTCGGGGCACCAT--------CA---TCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * * * *
15177884 ACCTGACTGGCGGCATTGTGCTTCCGGTGATCAGGGGGGCCTGGGCGATGAGCGCACATGATGTC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
** *
15177949 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAGCTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15178014 ACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTCTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15178079 GGGGACACTTTTTTCAAATGGCCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTC
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15178144 TGCATGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGACCAAAACGCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* *
15178209 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCT
* * * * *
15178274 TGGCATCAAACTTCACGTAAAGGCTTAAAGGACCATTGTATGAATTTATAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
***
15178339 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATC-GCTTG
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTG
* * * *
15178403 CGCTTCCCGTCTCTCTAGCCGACATAGTGCCCGCCCGCCCGTTTGCCTGCTCATTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCC----GCCTGCTCATTTCGTCGGTTG
* * * * * *
15178468 GCTTAGGTACACGAAGTTTATTCCCAGTCTAAGATAAGACCAGACTGAGGGTTGTGGCAGTAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGACTGAGGGTTGTGGTAGTAGGA
* *
15178533 TTGGCAGCACGCAGAGGGGGACCC-AGTCGATCCCCGAG-TTGCGCATCCCGCCCCTCTGGCCGA
767 TTGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGCCGG
* *
15178596 CTGAGCGCCTGCACGCTCGTTTCGTGGGATGACTTAG
830 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** *
15178633 GCATACGGAGTTCATTCCCAGTCTAACATCAAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * ** * *
15178698 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCATCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * *
15178763 ACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTTTGCGCACATAATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* * * *
15178828 GATGGGTACTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15178893 -CCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15178957 GGGACACTTTTTTCAAATGGTCACACAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15179022 GCATGCCAACAAAAGTACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
* ** *
15179087 TTTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
15179152 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATTGTAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15179217 TGGCATGCAGAAATATGAAGATGTGGCTAAACCTACCTACCACCCTATCGATCCACGGCTTACGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
15179282 ATCCCGTCTCTCAGGCCGGCATAGTGCCCGCACGCCCGCTCGTTTCATCGGTCGGCATAGGCATA
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATA
* * ** * *
15179347 TGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGTAGTAGGATCAGTACCACG
714 CGGAGTTCATTCCCAGTCTAAGAT-CAACCAGACTGAGGGTTGTGGTAGTAGGATTGGCAGCACG
* * * * * * * *
15179412 TAGAGGGGGACCCGGCCGATCCCCAGCTCGCAG-ATCCCACCCCTCTGGCCAGCTGAGTGCCCGT
778 CAGAGGGGGACCCGACCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
15179476 TCGCTCGTTTCGTGGGTTGACTTAG
842 ACGCTCGTTTCGTGGGTTGACTTAG
*
15179501 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATAAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A----C---C-------AGACC-G--
* *
15179566 CAAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
42 --AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** ** ** *
15179631 CACCATCGTCGGAGCATCAACAAAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGG
105 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG
* * * ** *
15179696 CCGGGGGGGTGTACGGAAAT-ATGTAAGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTA
169 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
15179760 TCCGTCATCATACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
15179825 CCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
15179890 TTCAAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACAAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** ** ** * *
15179955 TTGGGGCCAAAACTCCCACCAAAAATATTTTAAAAAATCTTGAACCCCAAAAAGTTTTAAAAATT
428 TTGGGGCCAAAACTCCTTCCAAAAA-ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
15180020 GTGAAAAATACAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
492 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
15180085 TGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCTACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
15180150 ACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG-CCGACCT
622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCT
* * * * * * *
15180214 GCTCATTTCATCGGTTAGCATAGGCATACGGAGTTCAATCCTAGTGTAAGATCTAACCAAACTGA
686 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAGACTGA
* * * * * * *
15180279 GGGTTGCGGTAGTAGGATTGGTACCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCCTCC
750 GGGTTGTGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * ** *
15180344 CGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTTATTTCATGGGTTGACTTAG
815 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
15180396 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCACATCGAGGGTTGCAATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * ** * *
15180461 CTCGGGCATGTGCTGGTGCCGTATTATTCTTCACCGGGGCACCCTTACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
** *
15180526 ACCTGACCGATGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** *
15180591 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATTTCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
15180656 CCCCTTAAAGAGCATTTAAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGT
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
15180721 GGACAATTTTTTCAAATGGTCCCAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
15180786 CATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGTGGCCAAAACTCTTTCCAAAAAATT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-T
* ** * *
15180851 TTTAAAACATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG-CTTGC
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
15180915 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
15180980 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
15181045 TCCCATCCCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
650 TCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCG-CC-T--GCTCATTTCGTCGGTTGGCTT
* * * *
15181110 AGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATAGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGACTGAGGGTTGTGGTAGTAGGATTGG
** * * * *
15181175 CAGCACATAAAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCCGCTGAGC
771 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
15181240 ACCCACAAGCTCGTTTCGTGGGTTGACTTAG
836 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15181271 GCGTACAGAGTTCATTCCCAGTCTAAGCATACGGCGTTCATTCCCAATCTAAGATCGGACCAAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C----A---GA-C---C
* * * * *
15181336 TGAGGGTTGCGATAGCACATGCTGGGCTAGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCAGGG
41 -GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * ** *
15181401 CACGATCACCGGAGCATCAAT-GGAGAATCTAACCGGCGGCATTGGGCTTCCGATGATTGGGGGG
105 CACCATCACCGGAGCATC-GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * * * * *
15181465 -TGGAGGGGCTGTGCACACATGATTTGTGATTGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCT
169 CCGG-GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
15181529 ATCCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGCGTTTGAGATTTTACAAGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15181594 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AACT-TTGCCAA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG----
* * * * ** * ***** * * * * * ** **
15181657 TAAAATGACAAG-GATCACGCT-ACCAAGTTTG-G--GGCCAA-AACTATTGCCAA-AAAAATTT
358 TACACT-TCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAA-AAAT-ACAAGGATCACGT
* * * * * * * *** *** *
15181715 TTA-AAAATCT-----C-GAA--CCGT--AAAAAGTTTT-AAAAATTGTGAAGAATAGAAAACGA
419 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTA-AAAA-GT
* * * ** * * *
15181768 GTC----GTCTTG--CCAT-G-AAAC---T--TC---ACGTGAAG------------GCTTAAGG
482 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
15181805 GACCATTGTATAAATTTACAAGCCATAACAAA-GGCATTGGCATGCAGAAATATGAAGATGTGCC
547 GACCATTGTATGAATTTACAAGCCATAA-AAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* *
15181869 TAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
611 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
15181934 CCGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
676 CCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-
* *
15181999 ACCAGACTGAGGGTTGTGATAGTAGGATTGGCAGCACACAGAGGGGGACCC-AGCCGATCCCCGG
740 ACCAGACTGAGGGTTGTGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGG
* *
15182063 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTTGTGGGTTAACTTAGCC
804 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG------T----
15182128 ATACGGAGTTCATTCCCAG
859 -T---GA---C-TT---AG
* *
15182147 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATG
* * ** * ** *
15182212 CTGGGCTTGGGCATGTGCTGGTGCCGCATTTTACTTCACCGGGGTACCATCGTCGGAGCATCGCC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC
* * * * * *
15182277 GGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGCTGGGGGGTGTACGTACATGA
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA-TCGGGGGGCCGGGGGGTGTGCGCACATGA
* * * * *
15182342 TGTACGATGGGTGCTGGTGCTTGGCCCTTACATTAGCCCCCTATCCCTCATCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
15182407 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
15182472 GAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTCCGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * **
15182537 TTTGTGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGACCAAAAAACCTTCCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-A
* * ***
15182602 AAATATTTTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
449 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
15182667 TCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTCTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
15182732 GGCATTGGCATGTAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
15182797 TACGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCAG-CCGCC--CGC--TT-GCCCGCT--CATT
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCCGCCTGCTCATTTCGTCGGTTGGC-TT
* * * * * * * *
15182854 --TCGT-C-G-GTTGGATTCCTAGTCTAAGATCGGACTAGACTGAGGGTTGTGGCAGCAGGATTG
707 AGGCATACGGAGTT-CATTCCCAGTCTAAGATC-AACCAGACTGAGGGTTGTGGTAGTAGGATTG
* * * * * * *
15182914 GCAGCATGCAGAAGGGGACCCGACCGATTCTCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTAAG
770 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
15182979 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
835 CGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T----AG
* * * *
15183021 TTCATTCGCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAAACTGAGGGTTGT
1 -------GCA---T-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * * ** *
15183086 GGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCC
50 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACC
* *
15183151 GGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
115 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTG
* * * * *
15183216 TACGCACATGATGTGTGATGGATGTTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAA
179 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
15183281 ACCTCGAGAACTCACACCCCCTTAAA-AGGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
244 ACCTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
15183345 TTAAAGTGTTTGAAATGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACAC-TCGAGTTTT
308 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
15183409 TAGCTAAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
373 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
15183474 AAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
438 AACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* *
15183539 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACA
502 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * * * *
15183604 AGCCATAAAAAGGGTAGTGGCATGTAGAAATACGAAGATGTGCCTAAACCCACCGACCACCCTAT
567 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
15183669 CGATCCACGGCTTGGGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCTCGCCCGCCCGCTCGTT
632 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCTGCTCATT
* * *
15183734 TTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACTGAGGGTTA
693 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAG-ACTGAGGGTTG
* * * * * * * * ** *
15183798 TGGCAGCAGGATCGGCAGCACGCATAAGGGGACCCGACTGATCCTCGGCTTGCGCATCTCTTCTC
756 TGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * **
15183863 TCTAGCCGACTGAGTGCCCGCACGCTTATTTCGTGGGTTGACTTAG
821 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15183909 GCATACGGAGTTCATTCCCAGTCTAGGCATACGAAGTTCTTTCCCAGTCTAAGATCGGACCAGAT
1 GCATAC-G-G---------AG--T-----T-C--A-----TTCCCAGTCTAAGATCGGACCAGAC
* ** * * *
15183974 CGAGGGTTACGGTAGCACATGCTGGGCTAAGGCATGTGCTGGTGCCGCATGTTTCTTCATCGAGG
40 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * ** * *
15184039 ------CA-C----CATCGTCGGAGAGCCTGACCGACAGCATTGACGTTCCGGCGATCGTGGGGT
105 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGC
*
15184093 CGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
170 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
15184158 CCTCATCAAACCTCGAGATCTCACACCCTCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGTC
235 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
15184223 AGTAGCCATTCAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
300 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
15184288 CGAG-TTTTAGGTTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTT
365 CGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
15184352 TGGGACCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGTAAAATA-TTTCAAAAATC
429 TGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAAAATC
15184416 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
492 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * *
15184481 TGAATTTATAAGCCATAAAAATGGTATTGGCATCCAGAAATATGAAAGATATGCCTAAACCCGCC
557 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG-AAGATGTGCCTAAACCCACC
* * * * *
15184546 TA-CACCCTA-CGAT-CATGGCTTGCGCATCTCGTCTCTCAGGCCGACATAGTGCCCGCCTGCCT
621 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CC-
* * * * ** *
15184608 GCCCACCCGCTCATTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTTCCAATCTAAGATTGGAT
682 G----CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAAC
**** * * * * * *
15184673 CAGACTGAGGGTTAACATAGCAGGACTGACAGCACGCAGAGGTGGACCCGGCCGATCCTCGGCTT
742 CAGACTGAGGGTTGTGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * *
15184738 GCGCATACCGCCCTTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAG
807 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15184798 GCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A---CC--------A---GACC-GA-
*** * *
15184863 CGAGGATTGCGACGGCACATGCTCGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGTG
43 -G-GG-TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
15184928 CACCATCACCAGAGCATCGTGGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGG
105 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGG
* * * *
15184993 TCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGTCCCCCTAT
169 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
15185058 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAGAGAGCATTTTAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
15185123 CAGTAGTCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
15185188 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
364 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* ** *
15185253 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTTGAAAATCA
429 TGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
*
15185317 TGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
493 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** * * * *
15185382 GAATTTACAAGCCA-ATAAAATGGCATTTTCACGTAGAAAAATGAAGATGTGCCGAAACCCACCT
558 GAATTTACAAGCCATA-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
15185446 ACCACCCTAACGATCCACGACTTGCGAATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG
622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCG
** * * **
15185511 CCCACTCATTTCATCGGTTGGTTTAGGCATACGGAGTTCATTCCTTGTCTAAGATCAGACCAGAC
683 CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGAC
*** ** * * * *
15185576 TGAGGGTTACAGTACCAAGATGGGTAGCACGCAGAGGGGGACCCGACCGATCGCCGGCTTGCGCA
747 TGAGGGTTGTGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * *
15185641 TCCCACCCCTCTGGCCGGCTGGAGCGGCCCCCACGCTCGTTTCCATGGGTTGACTTAG
812 TCCCGCCCCTCTGGCCGGCT-GAGC-GCCCGCACGCTCGTTT-CGTGGGTTGACTTAG
*
15185699 GCATACGGAGTTCATTCCCAATCTAAGCATACGAAATTCATTCACAGTCTAAGATCGGACCGGAC
1 GCATACGGAG-------------T-----T-C---ATTC---C-CAGTCTAAGATCGGACCAGAC
* ** * *
15185764 CGAGGGTAGCGACAAGCAGCATGCTGGGCTTGGGCATGGTGGCTGGTGCCGCATTTTTCTTCATC
40 CGAGGGTTGCG-GTAGCA-CATGCTGGGCTCGGGCAT-GT-GCTGGTGCCGCATTTTTCTTCGTC
** * *
15185829 GGGGCACCATCGTCGGAAGCATCG-CTGGAGAACCTG-CTGGCCGCATTGGGG-TCCGAGCGATC
101 GGGGCACCATCACCGG-AGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCG-GCGATC
* * * * * **
15185891 GGGGGGCTGTGCGCACATGATGTTCGCACAACATGATGTGTGATGGGTGCTGGTA-TTTTCCCTT
163 GGGGGGCCG-G-G----GGGTG-T-GCGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
15185955 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGA-T
219 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
15186018 TTACA-GTTTGCTGCCAGTAGCCATTAAAG-GATCTAAAATGTGGACACTTTTTTCAAATGTTCA
284 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCA
15186081 C-AAATCTTGTACAACTTCGAGTTTTTTAGCTGAA-TTTTTT-TGCAT--CAACAAAAATACAAG
348 CAAAATCTTGTAC-ACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* *
15186141 GATCACGTCTACCAAAGTTTGGGAG-CAAAACTCCTGTCCAAAAAAATTTTACAAAATCCCGAAT
411 GATCACGTCTACC-AAGTTTGGG-GCCAAAACTCCT-TCC-AAAAAATTTTAAAAAATCCCGAAC
* * * *
15186205 TGTAAAAACTTTCCAAAATCGTGAAAAATA-AAAACGA-TCGTCTTGCCATGAAACTTCAAGTGA
472 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* ** *
15186268 AGGCTTAA-GGACCATTGTATGAA-TTACAAGCCATAAAAATGGCATTAGCACACAGAAATATTA
537 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
15186331 AGATGTGCGTAAA-CAACCTATC-CCCTATCGATCCACGGCATTGCGCATCCCGTC-CTCT-G--
602 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGTCTCTCTGGCC
* * * *
15186390 TG-GTA-T-CCCG---GCTCTGGCGCA-TT--TC-ATTGGC-TAGGC--ACGAAGTTCATTCCCA
666 GGCGTAGTGCCCGCCCGC-CT-GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * *
15186442 GTCTAGGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCATGCAGAGAGGGACCCGA
729 GTCTAAGATCA-ACCAGACTGAGGGTTGTGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGA
* * * * * * *
15186507 TCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGCAGAGTGCCCGTACGCTCGTTTCATTGG
793 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
15186572 TTGAGTTAG
858 TTGACTTAG
15186581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15186607 ACATACGAAG
Statistics
Matches: 8200, Mismatches: 1124, Indels: 830
0.81 0.11 0.08
Matches are distributed among these distances:
852 6 0.00
853 11 0.00
854 1 0.00
855 413 0.05
856 33 0.00
857 14 0.00
858 2 0.00
859 11 0.00
860 6 0.00
861 4 0.00
862 1 0.00
863 149 0.02
864 6 0.00
865 5 0.00
866 5 0.00
867 374 0.05
868 1104 0.13
869 118 0.01
870 8 0.00
871 18 0.00
872 14 0.00
873 13 0.00
874 11 0.00
875 184 0.02
876 162 0.02
877 225 0.03
878 96 0.01
879 40 0.00
880 39 0.00
881 45 0.01
882 332 0.04
883 161 0.02
884 304 0.04
885 575 0.07
886 198 0.02
887 267 0.03
888 46 0.01
889 222 0.03
890 21 0.00
891 47 0.01
892 220 0.03
893 18 0.00
894 186 0.02
895 724 0.09
896 5 0.00
897 4 0.00
898 314 0.04
899 31 0.00
900 183 0.02
901 435 0.05
902 204 0.02
903 39 0.00
904 42 0.01
905 107 0.01
906 68 0.01
907 51 0.01
908 52 0.01
909 88 0.01
910 21 0.00
911 20 0.00
912 50 0.01
913 22 0.00
914 1 0.00
917 2 0.00
919 1 0.00
920 2 0.00
923 5 0.00
925 2 0.00
926 3 0.00
927 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (866 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAACCAGACTGAGGGTTGTGGTAGTAGGATTGGCAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAG
Found at i:15182163 original size:26 final size:26
Alignment explanation
Indices: 15182127--15182178 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15182117 TTAACTTAGC
15182127 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15182153 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15182179 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15182459 original size:855 final size:865
Alignment explanation
Indices: 15180801--15186687 Score: 6007
Period size: 885 Copynumber: 6.7 Consensus size: 865
15180791 CAACAAAAAT
* * * *
15180801 ACAAGGATCACGTCTAGCAAGTTTGTGGCCAAAACTCTTTCCAAAAAATTTTTAAAACATCCCGA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTCCAAAAAAATTTTAAAAAATCCCGA
** * * *
15180866 ACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG-CTTGCCATGAAACTTCACAT
65 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
15180930 GAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATAT
130 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * *
15180995 GAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCATCCCTCTGGC
195 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
*
15181060 CGACGTAGTGCCTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTC
260 CGACGTA--G--TGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * ** *
15181125 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATAGGCAGCACATAAAGGGG
317 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGG
* * * * * *
15181190 GACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCCGCTGAGCACCCACAAGCTCGTT
382 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * ** *
15181255 TCGTGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATACGGCGTTCATTCCCAATC
447 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTC
* * * * * *
15181320 TAAGATCGGACCAAACTGAGGGTTGCGATAGCACATGCTGGGCTAGGGCATGTGTTGGTGTCGCA
512 TAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *** * * *
15181385 TTTTTCTTCGTCAGGGCACGATCACCGGAGCATCAATGGAGAATCTAACCGGCGGCATTGGGCTT
577 TTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * * *
15181450 CCGATGAT-TGGGGGG-TGGAGGGGCTGTGCACACATGATTTGTGATTGGTGCTGGTACTTGGCC
642 CCGACGATCGGGGGGGCTGG-GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
15181513 CTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGCGTTTGAG
705 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15181578 ATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
770 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
15181643 CAC-AA-CTT-T-GC-C-A-A-T-AAAATG-
835 CACAAATCTTGTAACTCGATAGTGAAAATGA
* * *
15181664 ACAAGGATCACG-CTACCAAGTTTGGGGCCAAAACTATTGCCAAAAAAATTTTTAAAAATCTCGA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTT-CCAAAAAAATTTTAAAAAATCCCGA
* * *
15181728 ACCGTAAAAAGTTTTAAAAATTGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
65 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
15181793 GAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAACAAA-GGCATTGGCATGCAGAAATA
130 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA-AAATGGCATTGGCATGCAGAAATA
*
15181857 TGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
194 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
15181922 CCGACGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCA
259 CCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * *
15181987 GTCTAAGATCAGACCAGACTGAGGGTTGTGATAGTAGGATTGGCAGCACACAGAGGGGGACCC-A
324 GTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGA
* *
15182051 GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTTGTGG
389 -CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
15182116 GTTAACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
453 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * *
15182181 CAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTAC
518 CGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
15182246 TTCACCGGGGTACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACG
583 TTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * * * * *
15182311 ATTGGGGGGGCTGGGGGGTGTACGTACATGATGTACGATGGGTGCTGGTGCTTGGCCCTTACATT
648 ATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
15182376 AGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
713 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
15182441 GGTTTGCTACCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAGAAT
778 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA-AAT
*
15182506 CTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
842 CTTGTA-ACT-CGA-----TAG-TGAA----------AATG---------A
* * * *
15182557 TACAAGGATCGCGTCTACCAAGTTTGGGACCAAAAAAC-CTTCCGAAAATATTTTAAAAAATCCC
1 -ACAAGGATCACGTCTACCAAGTTTGGGGCC--AAAACTCTTCCAAAAAAATTTTAAAAAATCCC
* ***
15182621 AAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
63 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
15182686 GTGAAGGCTTATGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
128 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
15182751 ACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTG
193 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * * *
15182816 GCTGGCGTAGTGCCCAG-CCGCCCG--C--TT-GCCCGCT--CATT--TCGT-C-G-GTTGGATT
258 GCCGACGTAGTGCCC-GCCCGCCCGCTCGTTTCGTCGGTTGGC-TTAGGCATACGGAGTT-CATT
* * * * *
15182868 CCTAGTCTAAGATCGGACTAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCATGCAGAAGGGGAC
320 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGAC
* * * * *
15182933 CCGACCGATTCTCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCG
385 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
15182998 TGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
450 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * *
15183063 GATCGAACCAAACTGAGGGTTGTGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGTATTT
515 GATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * *
15183128 TTCTTCACCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCG
580 TTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * * *
15183193 ACGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGTGATGGATGTTGGTACTTGGCCCTTAT
645 ACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
15183258 ATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-AGGCATTTGAGATTT
710 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTT
* * *
15183322 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCACATGGTCACA
774 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-
**
15183387 AAATCTTGTACACTCGAGTTTTTAGCTAAATTTTTTTGTGCACGCCAACAAAAA
838 AAATCTTGTA-ACTC--G-----A--T--A-------GT----G--AA-AATGA
* *
15183441 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCG
1 -ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCCAAAAAAATTTTAAAAAATCCCG
*
15183506 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
64 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * *
15183571 TGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAAGGGTAGTGGCATGTAGAAATA
129 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
15183636 CGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGGGCATCCCGTCTCTCTGG
194 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
*
15183701 CC-AGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCAT
259 CCGA-CGTAGTG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
15183765 TCCCAGTCTAAGATCAGATC-GAACTGAGGGTTATGGCAGCAGGATCGGCAGCACGCATAAGGGG
319 TCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGG
* * * ** * * * * **
15183829 ACCCGACTGATCCTCGGCTTGCGCATCTCTTCTCTCTAGCCGACTGAGTGCCCGCACGCTTATTT
383 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
15183894 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGAAGTTCTTTCCCAGTCT
448 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * **
15183959 AAGATCGGACCAGATCGAGGGTTACGGTAGCACATGCTGGGCTAAGGCATGTGCTGGTGCCGCAT
513 AAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * * **
15184024 GTTTCTTCATCGAGGCACCAT---C---G--T---CGGAGAGCCTGACCGACAGCATTGACGTTC
578 TTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * *
15184078 CGGCGATCGTGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTT
643 CGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
15184142 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGATCTCACACCCTCTTAAAGAGCATTTGAGAAT
708 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
15184207 TTACAGGTTTGCTGTCAGTAGCCATTCAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCAC
773 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
15184272 AAAATCTTGTACACTTCGAGTTTTAGGTTGAATTGTTTTGTGCATGCCAAAAAAAA
838 -AAATCTTGTA-AC-TCGA----TA-G-TGAA----------AATG---------A
* * * *
15184328 TACAAGGATCACGTCTGCCAAGTTTGGGACCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCG
1 -ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCCAAAAAAATTTTAAAAAATCCCG
15184393 AACCGTAAAATA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
64 AACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
15184457 GTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGTATTGGCATCCAGAAAT
128 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * * *
15184522 ATGAAAGATATGCCTAAACCCGCCTA-CACCCTA-CGAT-CATGGCTTGCGCATCTCGTCTCTCA
193 ATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
15184584 GGCCGACATAGTGCCCGCCTGCCTGCCCACCCGCTCATTTCGTCGGTTTGCTTAGGCATACGGAG
257 GGCCGACGTAGTGCCCG-C--CC-G----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * ***** * *
15184649 TTCATTTCCAATCTAAGATTGGATCAGACTGAGGGTTAACATAGCAGGACTGACAGCACGCAGAG
314 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAG
* * * * * * *
15184714 GTGGACCCGGCCGATCCTCGGCTTGCGCATACCGCCCTTCTAGCTGGCTGAGCGCCCGCACGCTC
379 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
15184779 GTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
444 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
* * * *** *
15184844 GTGTAAGATCGGACCGGACCGAGGATTGCGACGGCACATGCTCGGCTCGGGCATGTGCTGGTGCC
509 GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * ** *
15184909 GCATTTTTCTTCGTCGGTGCACCATCACCAGAGCATCGTGGGAGAACCTGACCGACGGCATTGGG
574 GCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* * * *
15184974 GTTCCGGCGATCGAGGGGG-TCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTAGTACTTGG
639 GTTCCGACGATCGGGGGGGCT-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
15185038 CCCTTATATTGTCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAGAGAGCATTTT
703 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
15185103 AGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATG
768 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
15185168 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
833 GTCAC-AAATCTTGTA-AC-TCGA-----TAG-TGAA----------AATG---------A
* *
15185229 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCG
1 -ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCCAAAAAAATTTTAAAAAATCCCG
** * *
15185294 AACCGT-AAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACG
64 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
** * * *
15185358 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-ATAAAATGGCATTTTCACGTAGAAAA
129 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGCAGAAAT
* * * *
15185422 ATGAAGATGTGCCGAAACCCACCTACCACCCTAACGATCCACGACTTGCGAATCCCGTCTCTCTG
193 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
15185487 GCCGACGTAGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGTTTAGGCATACGGAGTTCAT
258 GCCGACGTAGTG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** *** * * * * *
15185552 TCCTTGTCTAAGATCAGACCAGACTGAGGGTTACAGTACCAAGATGGGTAGCACGCAGAGGGGGA
319 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGA
* * *
15185617 CCCGACCGATCGCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGGAGCGGCCCCCACGCTCGTT
384 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGC-GCCCGCACGCTCGTT
* * * *
15185682 TCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAATTCATTCACAGT
447 T-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * ** *
15185747 CTAAGATCGGACCGGACCGAGGGTAGCGACAAGCAGCATGCTGGGCTTGGGCATGGTGGCTGGTG
511 CTAAGATCGGACCAGACCGAGGGTTGCG-GTAGCA-CATGCTGGGCTCGGGCAT-GT-GCTGGTG
* * * *
15185812 CCGCATTTTTCTTCATCGGGGCACCATCGTCGGAAGCATCGCTGGAGAACCTG-CTGGCCGCATT
572 CCGCATTTTTCTTCATCGGGGCACCATCGCCGG-AGCATCGCCGGAGAACCTGACCGGCGGCATT
* * * *
15185876 GGGG-TCCGAGCGATC-GGGGGGCTGTGCGCACATGATGTTCGCACAACATGATGTGTGATGGGT
636 GGGGTTCCGA-CGATCGGGGGGGCTG-G-G----GGGTG-T-GCGC-ACATGATGTGCGATGGGT
** *
15185939 GCTGGTA-TTTTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTT
691 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
15186002 AAAGAGCATTTGAGA-TTTACA-GTTTGCTGCCAGTAGCCATTAAAG-GATCTAAAATGTGGACA
756 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACA
*
15186064 CTTTTTTCAAATGTTCACAAATCTTGTACAACTTCGAGTTTTTTAGCTGAATTTTTTTGCATCAA
820 CTTTTTTCAAATGGTCACAAATCTTGT--AAC-TCGA------TA---G--------TG----AA
**
15186129 CAAAAA
861 -AATGA
*
15186135 TACAAGGATCACGTCTACCAAAGTTTGGGAG-CAAAACTCCTGTCCAAAAAAATTTTACAAAATC
1 -ACAAGGATCACGTCTACC-AAGTTTGGG-GCCAAAACT-CT-TCCAAAAAAATTTTAAAAAATC
** * *
15186199 CCGAATTGTAAAAACTTTCCAAAATCGTGAAAAATA-AAAACGA-TCGTCTTGCCATGAAACTTC
61 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * **
15186262 AAGTGAAGGCTTAA-GGACCATTGTATGAA-TTACAAGCCATAAAAATGGCATTAGCACACAGAA
126 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
15186325 ATATTAAGATGTGCGTAAA-CAACCTATC-CCCTATCGATCCACGGCATTGCGCATCCCGTC-CT
191 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGTCTCT
* * * ** * * * *
15186387 CT-G-TG--GTA-T-CCCG-GCTCTGGCGC-ATT--TC-ATTGGC-TAGGC--ACGAAGTTCATT
255 CTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
15186438 CCCAGTCTAGGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCATGCAGAGAGGGAC
320 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGAC
* * * * * *
15186503 CCGATCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGCAGAGTGCCCGTACGCTCGTTTCA
385 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
15186568 TTGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGAAGTTCATTCCCAGTCTAA
450 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * ** *
15186633 GATCAGACCAAAATGAGGGTTGCGGTAGGACATGCTGGGCTCGGGCATGTGCTGG
515 GATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGG
15186688 CTCCGTATTT
Statistics
Matches: 4270, Mismatches: 555, Indels: 383
0.82 0.11 0.07
Matches are distributed among these distances:
855 478 0.11
856 10 0.00
857 6 0.00
858 3 0.00
859 11 0.00
861 4 0.00
862 79 0.02
863 159 0.04
864 4 0.00
869 2 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 1 0.00
875 1 0.00
878 6 0.00
879 2 0.00
880 19 0.00
881 5 0.00
882 86 0.02
883 18 0.00
884 253 0.06
885 609 0.14
886 185 0.04
887 238 0.06
888 34 0.01
889 274 0.06
890 7 0.00
891 5 0.00
892 8 0.00
893 10 0.00
894 16 0.00
895 234 0.05
896 6 0.00
897 9 0.00
898 361 0.08
899 31 0.01
900 170 0.04
901 362 0.08
902 44 0.01
903 37 0.01
904 32 0.01
905 98 0.02
906 57 0.01
907 51 0.01
908 45 0.01
909 81 0.02
910 16 0.00
911 20 0.00
912 50 0.01
913 23 0.01
915 1 0.00
920 2 0.00
924 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (865 bp):
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCCAAAAAAATTTTAAAAAATCCCGAA
CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACC
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
ATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
GGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATCTTG
TAACTCGATAGTGAAAATGA
Found at i:15183946 original size:26 final size:26
Alignment explanation
Indices: 15183906--15183959 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15183896 TGGGTTGACT
*
15183906 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATTCCCAGTC
*
15183932 TAGGCATACGAAGTTCTTTCCCAGTC
1 TAGGCATACGAAGTTCATTCCCAGTC
15183958 TA
1 TA
15183960 AGATCGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATTCCCAGTC
Found at i:15184835 original size:26 final size:26
Alignment explanation
Indices: 15184798--15184850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15184788 GTTGACTTAG
15184798 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15184824 GCATAC-GAAGTTCATTCCCAGTGTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15184850 G
1 G
15184851 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15185270 original size:901 final size:895
Alignment explanation
Indices: 15181658--15186687 Score: 6167
Period size: 885 Copynumber: 5.6 Consensus size: 895
15181648 CTTTGCCAAT
* *
15181658 AAAATGACAAGGATCACG-CTACCAAGTTTGGGGCCAAAACT-ATTGCCAAAAAAATTTTTAAAA
1 AAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAAAAAATTTTAAAAA
* * * *
15181721 ATCTCGAACCGTAAAAAGTTTTAAAAATTGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAAC
64 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
15181786 TTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAACAAA-GGCATTGGCATGC
129 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA-AAATGGCATTGGCATCC
*
15181850 AGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTC
193 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
15181915 TCTCTGGCCGACGTAGT----GCCCGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGAA
258 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGA
* * *
15181976 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGATAGTAGGATTGGCAGCACACAGA
323 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGATAGCAGGA-TGGCAGCACGCAGA
* * *
15182041 GGGGGACCC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGC
387 -GGGGACCCGA-CCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGC
* * * *
15182105 TCGTTTTGTGGGTTAACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
450 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
* *
15182170 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG
515 CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
15182235 CCGCATTTTACTTCACCGGGGTACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTG
580 CCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCG-TGGAGAACCTGACCGGCGGCATTG
* * * * * * *
15182300 GGGTTCCGACGATTGGGGGGGCTGGGGGGTGTACGTACATGATGTACGATGGGTGCTGGTGCTTG
644 GGGTTCCGGCGATCGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
15182365 GCCCTTACATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
708 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
15182430 GAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAAT
773 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
15182495 GGTCACAGAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
838 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * ** * *
15182553 AAAATACAAGGATCGCGTCTACCAAGTTTGGGACCAAAAAACCTTCCGAAAATATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* ***
15182618 CCCAAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
66 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * **
15182683 CACGTGAAGGCTTATGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
131 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCCAGA
* *
15182748 AATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCT
196 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
15182813 CTGGCTGGCGTAGTGCCCAG-CCGCCCGCTTGCCCGCTCATTTCGTC----GG--T-----T---
261 CTGGCCGACGTAGTGCCC-GCCCG-CC-C--GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACG
* * * * ** *
15182863 G-G---ATTCCTAGTCTAAGATCGGACTAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCATGCA
321 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGATAGCAGGA-TGGCAGCACGCA
* * * * *
15182924 GAAGGGGACCCGACCGATTCTCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTAAGCGCCCGCACG
385 G-AGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACG
* * * *
15182989 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAAGCATATGGAGTTCATTC
449 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTC
* * * * * *
15183054 CCAGTCTAAGATCGAACCAAACTGAGGGTTGTGGTAGCACATGCTAGGCTCGGGCATGTGCTGGT
514 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
15183119 GTCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGCGGCATT
579 GCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGT-GGAGAACCTGACCGGCGGCATT
* * * * * *
15183184 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGTGATGGATGTTGGTACTT
643 GGGGTTCCGGCGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
15183249 GGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-AGGCAT
707 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-GCAT
* * *
15183313 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAC
771 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
15183378 ATGGTCACAAAATCTTGTACAC-TCGAGTTTTTAGCTAAATTTTTTTGTGCACGCCAACA
836 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
15183437 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* *
15183502 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
66 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * **
15183567 CACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAAGGGTAGTGGCATGTAGA
131 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCCAGA
* * *
15183632 AATACGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGGGCATCCCGTCTCT
196 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
15183697 CTGGCC-AGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
261 CTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** *
15183761 TCATTCCCAGTCTAAGATCAGATC-GAACTGAGGGTTATGGCAGCAGGATCGGCAGCACGCATAA
325 TCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTATGATAGCAGGAT-GGCAGCACGCA-GA
* * ** * * * *
15183825 GGGGACCCGACTGATCCTCGGCTTGCGCATCTCTTCTCTCTAGCCGACTGAGTGCCCGCACGCTT
387 GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTC
* * *
15183890 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGAAGTTCTTTCCCA
452 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
* * * **
15183955 GTCTAAGATCGGACCAGATCGAGGGTTACGGTAGCACATGCTGGGCTAAGGCATGTGCTGGTGCC
517 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * **
15184020 GCATGTTTCTTCATCGAGGCACCAT---C---G--TC--GGAGAGCCTGACCGACAGCATTGACG
582 GCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTGGAGAACCTGACCGGCGGCATTGGGG
* *
15184075 TTCCGGCGATCGTGGGGTCGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCC
647 TTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
15184140 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGATCTCACACCCTCTTAAAGAGCATTTGAGA
712 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
15184205 ATTTACAGGTTTGCTGTCAGTAGCCATTCAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTC
777 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
15184270 ACAAAATCTTGTACACTTCGAG-TTTTAGGTTGAATTGTTTTGTGCATGCCAAAA
842 ACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACA
* * * *
15184324 AAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAACTCCTTCCGAAAGAATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
15184389 CCCGAACCGTAAAATA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
66 CCCGAACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
15184453 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGTATTGGCATCCAG
130 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCCAG
* * * *
15184518 AAATATGAAAGATATGCCTAAACCCGCCTA-CACCCTA-CGAT-CATGGCTTGCGCATCTCGTCT
195 AAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
15184580 CTCAGGCCGACATAGTGCCCGCCTGCCTGCCCACCCGCTCATTTCGTCGGTTTGCTTAGGCATAC
259 CTCTGGCCGACGTAGTGCCCG-C--CC-GCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * ** * ** *
15184645 GGAGTTCATTTCCAATCTAAGATTGGATCAGACTGAGGGTTAACATAGCAGGACTGACAGCACGC
320 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGATAGCAGGA-TGGCAGCACGC
* * * *
15184710 AGAGGTGGACCCGGCCGATCCTCGGCTTGCGCATACCGCCCTTCTAGCTGGCTGAGCGCCCGCAC
384 AGAGG-GGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCAC
* *
15184775 GCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
448 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
* * * * * *
15184840 CCCAGTGTAAGATCGGACCGGACCGAGGATTGCGACGGCACATGCTCGGCTCGGGCATGTGCTGG
513 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
15184905 TGCCGCATTTTTCTTCGTCGGTGCACCATCACCAGAGCATCGTGGGAGAACCTGACCGACGGCAT
578 TGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGT-GGAGAACCTGACCGGCGGCAT
* *
15184970 TGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTAGTACT
642 TGGGGTTCCGGCGATCG-GGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
15185035 TGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAGAGAGCAT
706 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
15185100 TTTAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAA
771 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
15185165 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
836 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
15185225 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* ** * *
15185290 CTCGAACCGT-AAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTT
66 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
** *
15185354 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-ATAAAATGGCATTTTCA-CGTA
131 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATC-CA
* * * * *
15185417 GAAAAATGAAGATGTGCCGAAACCCACCTACCACCCTAACGATCCACGACTTGCGAATCCCGTCT
194 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
15185482 CTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGTTTAGGCATACGGAG
259 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
** * * * *
15185547 TTCATTCCTTGTCTAAGATCAGACCAGACTGAGGGTTA-CAGTACCAAGATGGGTAGCACGCAGA
324 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGA-TAGCAGGAT-GGCAGCACGCAGA
* * *
15185611 GGGGGACCCGACCGATCGC-CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGGAGCGGCCCCCAC
387 -GGGGACCCGACCGATC-CTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCT-GAGC-GCCCGCAC
* * *
15185675 GCTCGTTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAATTCAT
448 GCTCGTTT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* * * * *
15185740 TCACAGTCTAAGATCGGACCGGACCGAGGGTAGCGACAAGCAGCATGCTGGGCTTGGGCATGGTG
512 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC-AGCA-CATGCTGGGCTCGGGCAT-GT-
* *
15185805 GCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAAGCATCGCTGGAGAACCTG-CTGG
573 GCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGG-AGCATCG-TGGAGAACCTGACCGG
* * * * *
15185869 CCGCATTGGGG-TCCGAGCGATCGGGGGG-CTGTGCGCACATGATGTTCGCACAACATGATGTGT
636 CGGCATTGGGGTTCCG-GCGATCGGGGGGTC-G-G-G----GGGTG-T-GCGC-ACATGATGTGC
** *
15185932 GATGGGTGCTGGTA-TTTTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
690 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15185996 -CCCCTTAAAGAGCATTTGAGA-TTTACA-GTTTGCTGCCAGTAGCCATTAAAG-GATCTAAAAT
755 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAAT
* *
15186057 GTGGACACTTTTTTCAAATGTTCAC-AAATCTTGTACAACTTCGAGTTTTTTAGCTGAA-TTTTT
819 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAG-TTTTTAGCTGAATTTTTT
15186120 T-TGCAT--CAACA
882 TGTGCATGCCAACA
*
15186131 AAAATACAAGGATCACGTCTACCAAAGTTTGGGAG-CAAAACTCCTGTCCAAAAAAATTTTACAA
1 AAAATACAAGGATCACGTCTACC-AAGTTTGGG-GCCAAAACTCCT-TCCAAAAAAATTTTAAAA
** * *
15186195 AATCCCGAATTGTAAAAACTTTCCAAAATCGTGAAAAATA-AAAACGA-TCGTCTTGCCATGAAA
63 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
15186258 CTTCAAGTGAAGGCTTAA-GGACCATTGTATGAA-TTACAAGCCATAAAAATGGCATTAGCA-CA
128 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC-
* * * *
15186320 CAGAAATATTAAGATGTGCGTAAA-CAACCTATC-CCCTATCGATCCACGGCATTGCGCATCCCG
192 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCG
* * * *
15186383 TC-CTCT-G-TG--GTA-T-CCCG---GCTCTG---GCGCA-TT--TC-ATTGGC-TAGGC--AC
256 TCTCTCTGGCCGACGTAGTGCCCGCCCGC-CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * * * ** * * *
15186428 GAAGTTCATTCCCAGTCTAGGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCATGC
320 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGATAGCAGGAT-GGCAGCACGC
* * * * * * *
15186493 AGAGAGGGACCCGATCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGCAGAGTGCCCGTAC
384 AGAG-GGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCAC
* * * *
15186558 GCTCGTTTCATTGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGAAGTTCATT
448 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
* * ** * *
15186623 CCCAGTCTAAGATCAGACCAAAATGAGGGTTGCGGTAGGACATGCTGGGCTCGGGCATGTGCTGG
513 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
15186688 CTCCGTATTT
Statistics
Matches: 3601, Mismatches: 425, Indels: 235
0.85 0.10 0.06
Matches are distributed among these distances:
878 5 0.00
879 2 0.00
880 31 0.01
881 3 0.00
882 80 0.02
883 17 0.00
884 299 0.08
885 598 0.17
886 202 0.06
887 254 0.07
888 29 0.01
889 274 0.08
890 4 0.00
891 3 0.00
892 6 0.00
894 17 0.00
895 235 0.07
896 2 0.00
897 11 0.00
898 360 0.10
899 39 0.01
900 168 0.05
901 373 0.10
902 44 0.01
903 50 0.01
904 32 0.01
905 98 0.03
906 60 0.02
907 52 0.01
908 52 0.01
909 88 0.02
910 21 0.01
911 20 0.01
912 50 0.01
913 22 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGATAGCAGGATGGCAGCACGCAGAGGGG
ACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTGGAGAACCTGACCGGCGGCATTGGGGTTCC
GGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
Found at i:15185738 original size:26 final size:26
Alignment explanation
Indices: 15185699--15185751 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15185689 GTTGACTTAG
* * *
15185699 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAATTCATTCACAATCTAA
*
15185725 GCATACGAAATTCATTCACAGTCTAA
1 GCATACGAAATTCATTCACAATCTAA
15185751 G
1 G
15185752 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCACAATCTAA
Found at i:15186613 original size:26 final size:26
Alignment explanation
Indices: 15186582--15186632 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15186572 TTGAGTTAGG
*
15186582 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTCATTCCCAGTCTAAA
15186608 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
15186633 GATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:15187116 original size:12 final size:12
Alignment explanation
Indices: 15187096--15187126 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15187086 CCGGCATAGT
15187096 GCCCGCCCGCTC
1 GCCCGCCCGCTC
*
15187108 GCTCGCCCGCTC
1 GCCCGCCCGCTC
15187120 GCCCGCC
1 GCCCGCC
15187127 TGCTTATTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.65, G:0.26, T:0.10
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:15188971 original size:26 final size:26
Alignment explanation
Indices: 15188942--15188994 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15188932 GTTGAGTTAG
15188942 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15188968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15188994 G
1 G
15188995 ATCAGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15190584 original size:26 final size:26
Alignment explanation
Indices: 15190555--15190605 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15190545 GTTGACTTAG
15190555 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15190581 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
15190606 GGATCAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15192389 original size:26 final size:26
Alignment explanation
Indices: 15192353--15192405 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15192343 GTTGACTTAG
*
15192353 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15192379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15192405 G
1 G
15192406 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15194174 original size:26 final size:26
Alignment explanation
Indices: 15194136--15194188 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15194126 GTTAACTTAG
15194136 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
15194162 GCATATGGG-GTTCATTCCCAGTCTAA
1 GCATA-GGGAGTTCATTCCCAGTCTAA
15194188 G
1 G
15194189 ATCGGATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:15194651 original size:891 final size:891
Alignment explanation
Indices: 15189680--15197749 Score: 10009
Period size: 903 Copynumber: 9.0 Consensus size: 891
15189670 TTGGCTTACA
* * * * * *
15189680 CATACGGAGTTCATTCCCAGTC-AAGATCGAACTGGATCGAGGGTTGTGGCTGCACATGCTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
*
15189744 TTGGGCATGTGCTGGTG--GCATAATTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCAGAG
66 TCGGGCATGTGCTGGTGCCGCAT--TTTTCTTCGTCGGGGCACCA-T--C---GC--CG---GAG
* * * * * *
15189807 AACCTGACCGGCGGCATTGGAGTTCCGATGATCGGGGGGATCGGGGGGGTGTGCGCACATGATAT
118 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGG-GCCGGGGGGTGTGCGCACATGATGT
*
15189872 GCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15189937 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
**
15190001 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * *
15190066 ATGCATGCCAACAAAAATACAAGGATCATGTCTACCAATTTTGGGGCCAAAACTGCTTCCGAAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * * *
15190131 AATTTTAAAATATCCCGAACCGTAAAAAGTGTTGGAAATCCTGAAAAGTAGAAAACGAGTCATCT
442 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15190196 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATTGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15190261 ATTGGCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTAG
572 ATTGGCACACAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * **
15190326 CGAATCCCGTCTCTCTACCCGGCGTAGTGCCTGCTCG-CCATCCGCCCGCTCGTTTCGTCGGTTG
636 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
15190390 GCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * **
15190455 TCGACAGCATGCAGAGGGGGACCC-AGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAAC
766 T-GACAGCACGCAGAGGGGGACCCGA-CCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
15190519 TGAGCGCCCGTACGCTCGTTTCGTGTGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
829 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** ** *
15190582 CATATGGAGTTCATTCCCAGTCTAGGATCAGATTGGACCGAGGGTTGCGATAGCACATGCTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** *
15190647 TCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACGATTGTCGGAGCATCGATGAAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---GC--CG--G-AGAA
* * * * * * *
15190712 CATGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGGCGTGCGCACATTATGTGC
120 CCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGC
* * * * *
15190777 GATTGGTGCAGGTACATGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGATAACTCACA
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15190842 CCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15190907 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACATCAAGTTTTTCGCTG-ATTTTTTTGT
314 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * *
15190971 GCATCCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
379 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
15191036 TTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTG
444 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
15191101 CCAGGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCAT
509 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
15191166 TGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCAGCCTATCGATCCACGGCTTGCGC
574 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15191231 ATCCTGTCTCTTTGGCCGGCATAGTGCCCGCCCACCCGCCCACCCGCTCGTTTCGTCGGTTGGCT
639 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
15191296 TAGGCATACGGAGTTCATTCCCAGTCTAACG-TCAGACCAAACCGAGGGTTGTGGCAGCAAGATT
704 TAGGCATACGGAGTTCATTCCCAGTCTAA-GATCGGACCAGACCGAGGGTTGCGGCAGCAGGA-T
* * * * * * *
15191360 GGCAGCACGAAGAGGGGGACCCGACCGATCCCCGGCTTGCGCGTCCCACCCCTCTGGTCGACTGA
767 GACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
15191425 GCGCCCGTC-TGCCCG-CTCGT---TT--CGTT-GG--T--TG-G--C-TT---A-T-T---
832 GCGCCCG-CACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
15191463 CGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
*
15191528 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCTGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC---G---C-C-GGAGAA
* ** * * * *
15191593 CCTGACTGGCGACATTTAGGTTCCGACGATTGGTGGGGCCGGAGGGTGTGCGCACATGATGTGTG
120 CCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
15191658 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCACAC
185 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15191723 CCACTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
250 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
15191788 GGACACTTTTTTCAAATTGTCACAAATTCTTGTACACTTCGATTTTTTAGCTGAAATTTTTTGTG
315 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
*
15191853 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
380 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** *
15191918 TTAAAAAAATCTTGAACCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
445 TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
15191983 CATGAAACTTCACGGGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATT
510 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
15192048 GGCA-AGAAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGCTTGCGC
575 GGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*** * * *
15192111 ATCCCGTCTCTCTGGCCGATATAGCGCCCGC-CAGCCCTACCCCGTCCCGTCTGCCCACTCTCTT
639 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTC-G------CCCG--CC--C-G-CC-CGCTCGT
* * *
15192175 CGTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGATCGAGGGT
690 --TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * ** *
15192240 TGCGGCAGCAGGATCGGCAACATGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCTCGCC
753 TGCGGCAGCAGGAT-GACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCC
* * *
15192305 CCTATGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
817 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
15192370 CTAGTCTAAG
882 CCAGTCTAAG
* ** * * *
15192380 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTACGGTAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
** * *
15192445 TCGGGCATGTGCTCATGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAGAA
* ** * ** * * * *
15192510 CCTGACCGACTG-CATCAGGGTTTCGACGATCGGAAGGGCCGAGGGTTGTGCGCAGATGATGTGA
120 CCTGACCGGC-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * * *
15192574 AATTGATGCTAGTACTTGGCCCTTACATTGGCCCCCTATCCCTTATCAAACCTCGAAAACTCACA
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15192639 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15192704 GGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGATGAATTTTTTTGT
314 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * *
15192769 GCATGCCAACAAAAATACAAGGATCACGTCTACGATGTTTGGGGCCAAAACTCCTTCCAAAAAAA
379 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
15192834 TTTTAAAAAATCCCGAACCGTAAAATGTTTTGAAAAACATGAAAAATAAAAAACGAGTCGTCTTG
444 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15192899 CCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
509 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
15192964 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
574 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
15193029 ATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCTCGCCCGCCTGCCCGCTCGTTTCTTTGGTTGGCT
639 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
15193094 TAGGCATACAGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTT------GC--G--G-
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATGA
* * * *
15193148 CAGCACGCAGAGGGGGATCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTTTGGCCGGTTGAGC
769 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
15193213 GCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCTAGTCTAAG
834 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
15193271 CAGACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * *
15193336 TCAGGCTTGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGTG
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCG
* * *
15193401 ACATTAGGGTTACGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 ACATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
15193466 GTACTTGGCCCTTATATTGGCCCCGTATCCCTCATTAAACCTCAAGAACTCACACTCCCTTAAAG
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
15193531 AGCATTTGTGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
260 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
15193596 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTTTTTGTGCCTGCCAACA
325 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
15193661 AAAATACAAGGACCAAGTCTACCAAGTTTGGGGCCAAAACTCCATCC-AAGAAAATGTTAAAAAA
390 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-AAAATTTTAAAAAA
* * *
15193725 TCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACT
454 TCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
15193790 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * *
15193855 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCGTCCCGCCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
15193920 TCTGGCCGGTGTAGTGCCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGGTTAGCTTAGGCATACA
649 TCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *
15193985 GAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATGACAGCATGCAG
714 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATGACAGCACGCAG
* * * *
15194050 AAGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGC
779 AGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
15194115 TCGTTTTGTGGGTTAACTTAGGCATAGGGAGTTCATTCCCAGTCTAAG
844 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** *
15194163 CATATGGGGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
15194228 TCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCAGTG
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCG
* *
15194293 ACATTGGGGTTACGACGATCGGGGGGGCCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGG
131 ACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
15194358 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
196 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
15194423 GCATTTGAGATTTTGCAGGTTTGCTGCC-GATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
261 GCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
15194487 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
325 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
15194552 AAAATACAAGGA-CTACGTCTACCAAGTTTGGGGACAAAA-TACCTTCCAAAAAAATTTTAAAAA
390 AAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAA
** * *
15194615 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTTTTGCCATGAAAC
453 ATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
15194680 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATACA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * * * *
15194745 GAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCAATACACAGCTTACGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
15194810 CTCTGGCCGGCGTAGTGCCCG-T-----------CCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
648 CTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** *
15194863 GGAGTTCATTCCCAGTCTATGATCAGACCAGATTGAGGGTTGCGGCAGCAGGATCGATAGCACGC
713 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGAT-GACAGCACGC
* * * ** * * *
15194928 AGAGAGGGACCCGATCGATCCCCGGCTTGC-CTATCCCGCCCCTCTTACCGGTTGAGCACCCGAA
777 AGAGGGGGACCCGACCGATCCTCGGCTTGCGC-ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
15194992 CGCTCGTTTTGTGGGTTGAC-T-----TA--G-G--------CA---T-A-
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
15195021 C--A--GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGATGGTTGTGGCACCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
** * * *
15195082 TCGACCATGTGCTGGTGCCGTATTCTTCTTCATCGGGGCACCATCACCCGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG------CA--C---CATCGCCGGAGAA
* * *
15195147 CCTGACTGGCGGCATTGGGGTTCCGACGATCGGGAGGGCCTGGGGGGTTGTGCGCACATGATGTG
120 CCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTG
15195212 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15195277 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTCAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15195342 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTTTAGCTGAA-TTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* * *
15195406 TGCATACCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAAGTCCTTCC-AAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15195470 ATTTATTAAAAAAT-TCAAATCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTC
443 A-TT-TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
15195534 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
15195599 AATTGCCACGCAGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCGATGGCTTG
571 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * * * *
15195664 CGCGTCCCGTCTCTCTTACAGGCGTAGTGCTCGCCCGCCCGCCCGCCCACTCGTTTTGTTGGTTG
636 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
15195729 CCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCCA-CAGG
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-CAGCAGG
* * * * * *
15195793 ATTGGCAGCATGCAGAGGGGGACCCGATCGATCCTTGGCTTGTGCATCTCGCCCCTCTGGCCGGC
765 A-TGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15195858 TGAGCGACCGCACTCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
829 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
15195921 CAAACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGAGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG-GG
* * ** *
15195986 CTCAGGCATGTGCTGGTGCCGCATTATGT-TGGGCTC-GGGCTCCATCACCGGAGCATCATTGGA
65 CTCGGGCATGTGCTGGTGCCGCATT-TTTCTTCG-TCGGGGCACCAT---C---GC--C---GGA
* * **
15196049 GGACCTGATCGGCGACATT-GGGTTCCGGTGATCGGGGGGGCCGGGGGGATGTGCGCACATGATG
117 GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATG
* *
15196113 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTC
181 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15196178 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTTTGAA
246 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15196243 ATGGTGATACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCAAGTTTTT-GCTGAATTTTTT
311 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * *
15196306 TATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCATCCGAAA
376 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15196371 AAATTTTAAAAAATTCCGAACCGGAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
441 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15196436 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
15196501 CATTGGCATGCAGAAATATGAACATGTGCCTAAACCTACCTACCAACCTATCGATCCACGGCTTG
571 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15196566 CGCATCCCGTGTCTCTAGCTGGCGTAGTGCCCGC-CCCCTCGCCTGCCCGCTCGTTTCGTCGGTT
636 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCC-CGCCCGCCCGCTCGTTTCGTCGGTT
* * * *** * * *
15196630 GGGTTAGGCATACGGACTTTATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGTGGCAGCAAG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGG
** * *
15196695 ATTGGTAGCACACAGAGGGGGACCCGACCGATCCGT-GGCTTACGCATCCCGCCCCTCTGGCCGG
765 A-TGACAGCACGCAGAGGGGGACCCGACCGATCC-TCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
15196759 CTGAGCGCCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
828 CTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
15196824 CATATGGAGTTCATTCCTAGTATAAGATCGGACAGGACCGAAGGTTGCGACAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
15196889 TCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCAGGGCACCATCGTCGGAGCATCGCCAGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---GC--CG---GAGAA
* * *
15196954 CCTGACCGGCGGCATTGGGATTCCGATGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
120 CCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGC
* *
15197019 GATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC-
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15197083 CCCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
249 CCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** ** *
15197148 GGGGACACTTTTTGAAAATGGTCACAAAATCTTGTACACTTCAACCTTTCAGCTGAATTTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* *
15197213 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** ** *
15197278 ATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
443 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15197343 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** *
15197408 TTGGCACACAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTACCGATCCGTGACTTGCG
573 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
15197473 CATCCCGTCTCTCTGGTCGATGTAGTG--C-CTACG--CGCCCGCCCGCTCGTTTCGTCAGTTGG
638 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCT-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
*** * * ** * * * * *
15197533 CTTAGATGTACGGAGTTCATTCCCAGTCTAATATCAGACTGGACTGAGGGTTGTGGTAACAGAAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
15197598 CGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCCTGCGCATCCCGCCCCTTTGGCCGACTA
767 -GACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
15197663 AGTGCCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
831 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15197724 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15197750 CATACGGAGT
Statistics
Matches: 6257, Mismatches: 717, Indels: 390
0.85 0.10 0.05
Matches are distributed among these distances:
854 84 0.01
856 1 0.00
858 1 0.00
859 1 0.00
860 3 0.00
862 1 0.00
863 2 0.00
865 53 0.01
866 254 0.04
867 208 0.03
871 1 0.00
872 1 0.00
874 2 0.00
878 144 0.02
879 83 0.01
880 364 0.06
881 896 0.14
882 2 0.00
883 1 0.00
884 7 0.00
885 1 0.00
886 6 0.00
887 2 0.00
888 4 0.00
889 3 0.00
890 5 0.00
891 665 0.11
892 259 0.04
893 5 0.00
894 5 0.00
895 137 0.02
896 4 0.00
897 7 0.00
898 3 0.00
899 7 0.00
900 80 0.01
901 164 0.03
902 583 0.09
903 1045 0.17
904 210 0.03
905 329 0.05
906 6 0.00
907 1 0.00
908 1 0.00
909 2 0.00
910 2 0.00
912 5 0.00
913 1 0.00
914 1 0.00
917 533 0.09
918 60 0.01
919 2 0.00
920 2 0.00
922 1 0.00
923 2 0.00
925 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCG
ACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATGACAGCACGCAGAG
GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:15196942 original size:902 final size:902
Alignment explanation
Indices: 15195016--15200334 Score: 5490
Period size: 902 Copynumber: 5.8 Consensus size: 902
15195006 GTTGACTTAG
* * * * * *
15195016 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGATGGTTGTG-GCACCACATGCTGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CGGACCGAAGGTTGCGAGCAGCACATGCTGG
* ** * ** * *
15195080 GCTCGACCATGTGCTGGTGCCGTATTCTTCTTCATCGGGGCACCATCACCCGAGCATCGCCGGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGCCGGAG
* * * *
15195145 AACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGAGGGCCTGGGGGGTTGTGCGCACATGATG
130 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGATGTGCGCACATGATG
15195210 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15195275 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTCAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15195340 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTTTAGCTGAA-TTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * *
15195404 TGTGCATACCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAAGTCCTTCC-AAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
15195468 AAATTTATTAAAAAATT-CAAATCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCG
455 AAA-TT-TTAAAAAATTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
15195532 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15195597 GGAATTGCCACGCAGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCGATGGCT
583 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * **
15195662 TGCGCGTCCCGTCTCTCTTA-CAGGCGTAGTGCTCGCCCGCCCGCCCGCCCACTCGTTTTGTTGG
648 TGCGCATCCCGTCTCTC-TAGCCGGTGTAGTGCCCG-CC-CCCGCCCGCCCGCTCGTTTCGTCAG
* * ** *
15195726 TTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGTGGCCA-
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACTGAGGGTTGTGG-CAG
* * * * * *
15195789 CAGGATTGGCAGCATGCAGAGGGGGACCCGATCGATCCTTGGCTTGTGCATCTCGCCCCTCTGGC
773 CAAGATTGGTAGCACGCAGAGGGGGACCCGACCGATCC-TGGCTTGCGCATCCCGCCCCTCTGGC
* * *
15195854 CGGCTGAGCGACCGCACTCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
837 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
15195919 A
902 A
* * *
15195920 GCAAACGGAGTTCATT-CTCAGTCTAAGATCGGATCGGACCGAGGGTTGCG-GTAGCACATGCTG
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCGGA-CGGACCGAAGGTTGCGAGCAGCACATGCTG
* * ** * * * **
15195983 AGGCTC-AGGCATGTGCTGGTGCCGCATTATGT-TGGGCTC-GGGCTCCATCACCGGAGCATCAT
64 -GGCTCGA-GCATGTGCTGGTGCCACATT-TTTCTTTG-TCGGGGCACCATCGCCAGAGCATCGC
* * * **
15196045 TGGAGGACCTGATCGGCGACATT-GGGTTCCGGTGATCGGGGGGGCC-GGGGGGATGTGCGCACA
125 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGATGTGCGCACA
* *
15196108 TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAG
190 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
15196173 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGT
255 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
15196238 TTGAAATGGTGATACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCAAGTTTTT-GCTGAAT
320 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
* * * * *
15196301 TTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCATC
385 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** *
15196366 CGAAAAAATTTTAAAAAATTCCGAACCGGAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
450 CGAAAAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
15196431 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAA
515 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
15196496 AATGGCATTGGCATGCAGAAATATGAACATGTGCCTAAACCTACCTACCAACCTATCGATCCACG
580 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
15196561 GCTTGCGCATCCCGTGTCTCTAGCTGGCGTAGTGCCCGCCCCCTCGCCTGCCCGCTCGTTTCGTC
645 GCTTGCGCATCCCGTCTCTCTAGCCGGTGTAGTGCCCG-CCCC-CGCCCGCCCGCTCGTTTCGTC
* * * * * *
15196626 GGTTGGGTTAGGCATACGGACTTTATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGTGGCAG
708 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAG
* *
15196691 CAAGATTGGTAGCACACAGAGGGGGACCCGACCGATCCGTGGCTTACGCATCCCGCCCCTCTGGC
773 CAAGATTGGTAGCACGCAGAGGGGGACCCGACCGATCC-TGGCTTGCGCATCCCGCCCCTCTGGC
15196756 CGGCTGAGCGCCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
837 CGGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
15196821 AA
901 AA
* *
15196823 GCATATGGAGTTCATTCCTAGTATAAGATCGGACAGGACCGAAGGTTGCGA-CAGCACATGCTGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGAC-GGACCGAAGGTTGCGAGCAGCACATGCTGG
* * * *
15196887 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCAGGGCACCATCGTCGGAGCATCGCCAGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGCCGGAG
* * *
15196952 AACCTGACCGGCGGCATTGGGATTCCGATGATCGGGGGGGCC-GAGGGGG-TGTGCGCACATGAT
130 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCTG-GGGGGATGTGCGCACATGAT
* *
15197015 GTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
15197080 CAC-CCCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
259 CACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
** ** *
15197144 AAATGGGGACACTTTTTGAAAATGGTCACAAAATCTTGTACACTTCAACCTTTCAGCTGAATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
*
15197209 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGA
388 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** *
15197274 AAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
453 AAAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
15197339 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * ** *
15197404 GGCATTGGCACACAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTACCGATCCGTGACT
583 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** *
15197469 TGCGCATCCCGTCTCTCTGGTCGATGTAGTG-CC-TACGCGCCCGCCCGCTCGTTTCGTCAGTTG
648 TGCGCATCCCGTCTCTCTAGCCGGTGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCAGTTG
*** * * *
15197532 GCTTAGATGTACGGAGTTCATTCCCAGTCTAATATCAGACTGGACTGAGGGTTGTGGTAAC-AGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAAG-
* * * * * *
15197596 ATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCCTGCGCATCCCGCCCCTTTGGCCGAC
777 ATTGGTAGCACGCAGAGGGGGACCCGACCGAT-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
15197661 TAAGTGCCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
15197723 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGA-GTTAATTCCCAGTCTAAGCATATG-GAGT
1 GCATACGGAGTTCATTCCTAGTCTAAG-AT-CGGACG--GA---CC-G---AAG-GT-TGCGAG-
* * ** * * * * ** ** *
15197786 TAATTC-CA-GTCTAAGCATACGGAGTTCAT-TCCTAGT-CTAAGCATATAGAGTTAATTCCCAG
52 -CA-GCACATG-CTGGGC-T-C-GAG--CATGTGCTGGTGC-CA-CAT-T---TTTCTTTGTCGG
** * * *
15197847 TCCTA-GATCGCACTAGACCGAGGGTTG-CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGC
103 GGC-ACCATCGC-C-AGAGC-A---TCGCCGG-AG-A-A--C----CT-GA-C-----C--G-GC
* * * * ** *
15197910 CACATTTTTCTTCGTCGGGGCTCCATCATCGAAGCATCGCTGGAGGACCTAACCGACGGCAT-TG
142 GACA-------T--T-GGGG-T---TC--CGACG-ATCG--GGGGGGCCT----GGGGGGATGT-
* * ** * * **
15197974 GGGTTC-CAGTGATCGGGGGGGCCGGGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTAC
183 GCG--CACA-TGAT-----GTG-C-GATGGGTGCTG-GTAC-T--TG-GC-------CCTTATA-
* *
15198037 TTGGCCCTTATATTGGCTCCCTATCCCACATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
225 TTGG--C---------C-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
15198102 TTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGCCTAAAATGGGGACACTTTTTTCA
278 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
15198167 AATGGTGC-CTAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAA
343 AATGGT-CAC-AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * *
15198231 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTCCAAAAAAATTTTAATAAATCC
406 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC
* **
15198296 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTATCTTGCCATGAAACTTCA
471 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
15198361 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGCATTGGAATGCAGAAA
536 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
15198426 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCT
601 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
15198491 GGCCGATGTAGT----G--CCCGCCCGCCCGCTTGTTTTGTCAGTTGGCTTAGGCATACGGAGTT
666 AGCCGGTGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* ** * * * *
15198550 CATTCCCAGTCTAAGATCAGACTAGA-TCGAGGGTTGTGATAGCAGGATCGATAGCACGTAGAGG
731 CATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGTGGCAGCAAGATTGGTAGCACGCAGAGG
* * *
15198614 GGGACCC-AGCCGATCCTCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTC
795 GGGACCCGA-CCGATCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
15198678 GTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTTCCAG--T--
858 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
15198719 -C-TA---AG---------A-TC-AA-AT----CGGACC-AAGGGTTGC-AGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACGGACCGAA-GGTTGCGAGCAGCACATGCTGG
* * * ** *
15198761 GCTCGGGCAAGTGCTGGTGCCATATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCATCGAAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGCCGGAG
* * ** * *
15198826 AACCTGACCGAC-AGCATTGGGGTTCCGACAATCGGGGGTACC-GGGGGGGTGTGCACACATGAT
130 AACCTGACCGGCGA-CATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGATGTGCGCACATGAT
* *** *
15198889 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG--GCCT-TTTGTCATCAAACCTCCAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* ** *
15198951 CACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCCACCAGTAGCCATTAAAGTGTATGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15199016 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
15199081 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
389 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * **
15199146 AAAGTTTTAAAAAA-TCCTGAACCACAAAAAGTTTCGATAAAAAAATGAAAAATAGAAAACGAGT
454 AAAATTTTAAAAAATTCC-GAACCGCAAAAAGTTTC-A-AAAATCATGAAAAATAGAAAACGAGT
* *
15199210 CTTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
516 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
15199275 ATGGCATTAGCACGCAGAAATATGAACATGTGCCTAAACCCACCTACCACACTATTGATCCACGG
581 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
15199340 CTTGCGCATCCCGTCTCTC-AGGCCGGTATAGTG-CC-CACCCGCCCGCCCACTCATTTCATCGG
646 CTTGCGCATCCCGTCTCTCTA-GCCGGTGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCAG
* * * * **
15199402 TTGGCTGTAGGCATACAGAGTTCATTCTACTAGTCTAAGAATTAAGAACCGGACCCAAGGGTTGT
710 TTGGCT-TAGGCATACGGAGTTCATTC--CCAGTCTAAG-A-TCAG-ACTGGA-CTGAGGGTTGT
* * * * * * *
15199467 GGCAGC-AGA-TGGCAGCGATGCAG-GCGGTGACCCGATCGATCCTCGGCTTGCACATACCGCCT
768 GGCAGCAAGATTGGTAGC-ACGCAGAG-GGGGACCCGACCGATCCT-GGCTTGCGCATCCCGCCC
* *
15199529 CTCTAGCCGGCTGA-CACCCGCACGCTCGTTTC--------A--T--G------GAGTTCATTCC
830 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
15199575 CAGTCTAA
895 CAGTCTAA
* * * *
15199583 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTT-CCAGCAACACATGCTAG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CGGACCGAAGGTTGCGAGCAGCACATGCTGG
* * * ** * * **
15199647 GCTCGGGCATGTGCTGGTGCCGCATTTTTATTCCTCGGGGCACCATCGTCATAGCATCGCCACAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGCCGGAG
* * * * * *
15199712 AACCTGACCGACGACATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGGTGTGTGCACATGATG
130 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGATGTGCGCACATGATG
*
15199777 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
15199842 ACACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGGA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* **
15199907 ATGGGGACACCTTTTTCAAATGGTCAC-AAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * * *
15199970 TTTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAACTTTGGGGCCAAAACTACTTCCAAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
15200035 AAATTTTAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
455 AAATTTTAAAAAATTC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
15200099 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15200164 GCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
584 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
15200229 GCGCATCCCGTCTCTTTGGCCAGTGTAGTGCCCG---CCGGCCGCCCGCTCGTTTCGTCAGTTGG
649 GCGCATCCCGTCTCTCTAGCCGGTGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCAGTTGG
* *
15200291 CTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCAGACTGGAC
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
15200335 CGTGGGTTAC
Statistics
Matches: 3723, Mismatches: 471, Indels: 468
0.80 0.10 0.10
Matches are distributed among these distances:
860 12 0.00
862 1 0.00
865 1 0.00
866 5 0.00
867 125 0.03
868 103 0.03
869 175 0.05
870 1 0.00
873 25 0.01
874 19 0.01
876 9 0.00
877 1 0.00
878 26 0.01
879 58 0.02
880 18 0.00
881 3 0.00
882 9 0.00
883 4 0.00
884 23 0.01
885 26 0.01
886 281 0.08
887 58 0.02
888 96 0.03
889 31 0.01
890 102 0.03
891 2 0.00
892 2 0.00
894 1 0.00
895 9 0.00
896 3 0.00
897 2 0.00
900 77 0.02
901 163 0.04
902 493 0.13
903 462 0.12
904 108 0.03
905 337 0.09
906 4 0.00
909 9 0.00
910 3 0.00
911 6 0.00
912 4 0.00
913 7 0.00
914 4 0.00
915 1 0.00
916 4 0.00
917 7 0.00
918 10 0.00
919 2 0.00
921 1 0.00
922 12 0.00
923 2 0.00
924 3 0.00
925 1 0.00
927 3 0.00
928 7 0.00
929 2 0.00
930 1 0.00
931 1 0.00
932 1 0.00
936 3 0.00
937 4 0.00
938 3 0.00
942 1 0.00
943 1 0.00
944 1 0.00
945 2 0.00
946 7 0.00
947 2 0.00
949 1 0.00
950 4 0.00
951 2 0.00
952 12 0.00
953 1 0.00
955 2 0.00
956 7 0.00
957 7 0.00
958 3 0.00
959 1 0.00
960 4 0.00
961 7 0.00
962 5 0.00
963 8 0.00
964 3 0.00
965 7 0.00
969 5 0.00
970 4 0.00
971 2 0.00
972 6 0.00
974 1 0.00
977 2 0.00
978 5 0.00
979 9 0.00
980 3 0.00
981 2 0.00
982 3 0.00
983 2 0.00
990 3 0.00
991 6 0.00
993 1 0.00
994 2 0.00
995 1 0.00
998 1 0.00
999 4 0.00
1000 182 0.05
1001 1 0.00
1002 1 0.00
1003 108 0.03
1004 305 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGACGGACCGAAGGTTGCGAGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
ACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGATGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTAGCCGGTGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAAGATTG
GTAGCACGCAGAGGGGGACCCGACCGATCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15197733 original size:26 final size:26
Alignment explanation
Indices: 15197697--15197848 Score: 234
Period size: 26 Copynumber: 5.9 Consensus size: 26
15197687 GTTGACTTAG
*
15197697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
15197723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15197749 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
15197775 GCATATGGAGTTAATT-CCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* *
15197800 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
**
15197826 GCATATAGAGTTAATTCCCAGTC
1 GCATACGGAGTTAATTCCCAGTC
15197849 CTAGATCGCA
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
25 23 0.20
26 93 0.80
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:15197817 original size:51 final size:52
Alignment explanation
Indices: 15197697--15197848 Score: 252
Period size: 51 Copynumber: 2.9 Consensus size: 52
15197687 GTTGACTTAG
* *
15197697 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTAATTCCCAGTCTAA
*
15197749 GCATACGGAGTTAATTCCCAGTCTAAGCATATGGAGTTAATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTAATTCCCAGTCTAA
* *
15197800 GCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTAATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTAATTCCCAGTC
15197849 CTAGATCGCA
Statistics
Matches: 93, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
51 48 0.52
52 45 0.48
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (52 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTAATTCCCAGTCTAA
Found at i:15197825 original size:77 final size:78
Alignment explanation
Indices: 15197697--15197848 Score: 252
Period size: 77 Copynumber: 2.0 Consensus size: 78
15197687 GTTGACTTAG
* *
15197697 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTA
1 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTA
15197762 ATTCCCAGTCTAA
66 ATTCCCAGTCTAA
* * *
15197775 GCATATGGAGTTAATT-CCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTA
1 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTA
15197839 ATTCCCAGTC
66 ATTCCCAGTC
15197849 CTAGATCGCA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 55 0.80
78 14 0.20
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (78 bp):
GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTA
ATTCCCAGTCTAA
Found at i:15200104 original size:886 final size:874
Alignment explanation
Indices: 15197806--15200329 Score: 3330
Period size: 886 Copynumber: 2.9 Consensus size: 874
15197796 CTAAGCATAC
* ** * **
15197806 GGAGTTCATTCCTAGTCTAAGCATATAGAGTTAATTCCCAGTCCT-AGATCGCACTAGACCGAGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATT-CCAGT-CTAAGATCGAACCGGACCGAGG
* * *
15197870 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCTCCA
64 GTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* ** * * * * *
15197935 TCATCGAAGCATCGCTGGAGGACCTAACCGACGGCATTGGGGTTCCAGTGATCGGGGGGGCCGGG
129 TCGTC-AAGCATCGC-CAAGAACCTGACCGACGACATTGGGGTTCCGGCGATC-GGGGGGCCGGG
*
15198000 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCA
191 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCT
* *
15198065 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGT
255 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15198130 AGCCATTAAAGTG-CCTAAAATGGGGACACTTTTTTCAAATGGTGC-CTAAAATCTTGTACACTT
320 AGCCATTAAAGTGTCC-GAAATGGGGACACTTTTTTCAAATGGT-CAC-AAAATCTTGTACACTT
*
15198193 CAAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
382 CGAGTTTTTAGCTGATTTTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
15198258 GGGGCCAAAGCTCCTTCCAAAAAAATTTTAATAAATCCCAAACCGCAAAAAGTTTCAAAAATCAT
446 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCAT
*
15198323 GAAAAATAGAAAACGAGTTATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
510 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
15198388 AATTTACAAGCCATAACAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
575 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
15198453 CACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCGATGTAGTG---CCCGCCCGCCC
640 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCCCCGCCCGCCC
* * * * * * *
15198515 GCTTGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGA
705 GCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAAGACCAGACCAA
* * * * *
15198580 GGGTTGTGATAGCAGGATCGATAGCACGTAGAGGGGGACCCAGCCGATCCTCGACTTGCGCATCC
770 GGGTTGTGACAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCTCGACTTGCACATAC
* * ** *
15198645 CGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGT
835 CGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCAT
* * * * * *
15198685 GG-GTTGA----C--T-TAGGCATACGGAGTTTATTTCCAGTCTAAGATCAAATCGGACCAAGGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAG-TTAATTCCAGTCTAAGATCGAACCGGACCGAGGG
* * * *
15198742 TTGCAGTAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCATATTTTTCTTTGTCGGGGCACCAT
65 TTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * * * *
15198807 CGCCAGAGCATCATCGAAGAACCTGACCGAC-AGCATTGGGGTTCCGACAATCGGGGGTACCGGG
130 CGTCA-AGCATC-GCCAAGAACCTGACCGACGA-CATTGGGGTTCCGGCGATCGGGGG-GCCGGG
* * ***
15198871 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-GCCT-TTTGTC
191 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTC
* * **
15198934 ATCAAACCTCCAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCCACCAGTA
256 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
** *
15198999 GCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAT
321 GCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
15199064 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
386 TTTTTAGCTG-ATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * **
15199129 CCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCCTGAACCACAAAAAGTTTCGATAAAAAAATGA
450 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTC-A-AAAATCATGA
* *
15199194 AAAATAGAAAACGAGTCTTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAA
512 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
15199259 TTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAACATGTGCCTAAACCCACCTACCA
577 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
15199324 CACTATTGATCCACGGCTTGCGCATCCCGTCTCTCAGGCCGGTATAGTGCCCACCCGCCCGCCCA
642 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCC-CCCGCCCGCCCG
* * * * *
15199389 CTCATTTCATCGGTTGGCTGTAGGCATACAGAGTTCATTCTACTAGTCTAAGAATTAAGAACCGG
706 CTCGTTTCGTCAGTTGGCT-TAGGCATACAGAGTTCATTC--CCAGTCTAAG-A-TAAG-ACCAG
* * * * * *
15199454 ACCCAAGGGTTGTGGCAGCA-GAT-GGCAGCGATGCAG-GCGGTGACCC-GATCGATCCTCGGCT
765 A-CCAAGGGTTGTGACAGCAGGATCGACAGC-ACGCAGAG-GGGGACCCAG-CCGATCCTCGACT
*
15199515 TGCACATACCGCCTCTCTAGCCGGCTGA-CACCCGCACGCTCGTTTCAT
826 TGCACATACCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCAT
* *
15199563 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCC-AGTCTAAGATCGAACCGGACCGAGGG
* * * * * *
15199628 TTCCAGCAACACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTATTCCTCGGGGCACCAT
65 TTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
15199693 CGTCATAGCATCGCCACAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGAGGGGGCCGGGG
130 CGTCA-AGCATCGCCA-AGAACCTGACCGACGACATTGGGGTTCCGGCGATCG-GGGGGCC-GGG
* *
15199758 GGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
191 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT
* *
15199823 CATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGT
255 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
15199888 AGCAATTAAAGTGTCCGGAATGGGGACACCTTTTTCAAATGGTCAC-AAATCTTGTACACTTTGA
320 AGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
15199952 GTTTTTAGCTGATTTTTTTTTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAACTTTGGGG
385 GTTTTTAGCTGATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
15200017 CCAAAACTACTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAA
450 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
15200082 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATT
514 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
15200147 TACAAGCCATAAAAATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACC
579 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
15200212 CTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCAGTGTAGTGCCCGCCGGCCGCCCGCTC
644 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCCCCGCCCGCCCGCTC
* *
15200277 GTTTCGTCAGTTGGCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCAGAC
709 GTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAAGAC
15200330 TGGACCGTGG
Statistics
Matches: 1421, Mismatches: 181, Indels: 86
0.84 0.11 0.05
Matches are distributed among these distances:
866 2 0.00
867 117 0.08
868 109 0.08
869 175 0.12
870 8 0.01
871 180 0.13
872 7 0.00
873 25 0.02
874 19 0.01
876 9 0.01
877 1 0.00
878 32 0.02
879 60 0.04
880 17 0.01
881 1 0.00
882 9 0.01
883 1 0.00
884 19 0.01
885 34 0.02
886 308 0.22
887 59 0.04
888 96 0.07
889 31 0.02
890 102 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (874 bp):
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCAGTCTAAGATCGAACCGGACCGAGGGT
TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
GTCAAGCATCGCCAAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCCAAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCCCCGCCCGCCCGCTCGTTTCGT
CAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAAGACCAGACCAAGGGTTGTGACA
GCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCTCGACTTGCACATACCGCCCCTCTAG
CCGGCTGAGCACCCGCACGCTCGTTTCAT
Found at i:15200866 original size:713 final size:717
Alignment explanation
Indices: 15199583--15201060 Score: 2211
Period size: 713 Copynumber: 2.1 Consensus size: 717
15199573 CCCAGTCTAA
* * * *
15199583 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTCCAGCAACACATGCTAGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACAACAACAAATGCTAGG
* *
15199648 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCCTCGGGGCACCATCGTCATAGCATCGCCACAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCCTCGGGGCACCATCGCCAGAGCATCGCCACAGA
* *
15199713 ACCTGACCGACGACATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGGTGTGTGCACATGATGT
131 ACCTGACCGACGACATTGGGGTTCCGGCGATCGAGGGGGCCGGGAGGGGTGTGCGCACATGATGT
* ** *
15199778 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
15199843 CACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGGAA
261 CACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAA
* *
15199908 TGGGGACACCTTTTTCAAATGGTCACAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTT
326 TGGGGACACCTTTTTCAAATGGTCACAAATCTTGTACACTTTGAGTTTTTACCTGATTTTTTTGT
** **
15199973 GCATGCCAAAAAAAATACAGGGATCACGTCTACCAACTTTGGGGCCAAAACTACTTCCAAAAAAA
391 GCATGCCAAAAAAAATACAAAGATCACGTCTACCAACTTTGGGGAAAAAACTACTTCCAAAAAAA
* * *
15200038 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
456 TTTGAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
15200103 CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
15200168 TGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
586 TGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
* * * *
15200233 ATCCCGTCTCTTTGGCCAGTGT-A-G-TGCCCGCC-GGCCGCCCGCTCGTTTCGTC-AGTTGGCT
651 ATCCCGTCTCTCTGGCCAGCGTAATGCTGCCCGCCTGCCCGCCCGCTCGTTTCATCGA-TTGGCT
15200293 TAG
715 TAG
* * * * * * *
15200296 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACTGGACCGTGGGTTACAACAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACAACAACAAATGCTAGG
* * * *
15200361 CTCGGGCTTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGA-AG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCCTCGGGGCACCATCGCCAGAGCATCGCC-ACAG
* * *
15200425 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGAGGGGTGTGCGCACATGATG
130 AACCTGACCGACGACATTGGGGTTCCGGCGATCGAGGGGGCCGGGAGGGGTGTGCGCACATGATG
*
15200489 TGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTG
195 TGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * * *
15200554 ACAC-CACCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGA
260 ACACTC-CCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGA
*
15200618 AATGGGGACA-TTTTGTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGATTTTT
324 AATGGGGACACCTTT-TTCAAATGGTCAC-AAATCTTGTACACTTTGAGTTTTTACCTGATTTTT
* * * * *
15200682 TTGTGCATGCCAACAAAACTACAAAGATCACGTCTACCAAGTTTGGGGAAAAAACTCCTTCCGAA
387 TTGTGCATGCCAAAAAAAATACAAAGATCACGTCTACCAACTTTGGGGAAAAAACTACTTCCAAA
* * * * *
15200747 AAAATTTGAAAAAATCCCGAACCGCAAAAGGTTTCCAAAATCGTGAAAAATAGAGAACGAGTCGT
452 AAAATTTGAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
* *
15200812 CTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATG
* * *
15200877 GCATTGGCATGTAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
582 GCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
* *
15200942 GCGCATCCCGTCTCTCTGGCCGGCGTAATGCCTGCCTGCCTGCCCGCCCGCTCGTTTCATCGATT
647 GCGCATCCCGTCTCTCTGGCCAGCGTAATG-CTGCCCGCCTGCCCGCCCGCTCGTTTCATCGATT
15201007 GGCTTAG
711 GGCTTAG
**
15201014 GCATACGGAGTTCATTCCTAGTCTAAGAT-AGGACCAAACCGAGGGTT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCA-GACCGGACCGAGGGTT
15201061 GCGGCAGCAG
Statistics
Matches: 681, Mismatches: 73, Indels: 17
0.88 0.09 0.02
Matches are distributed among these distances:
711 4 0.01
712 159 0.23
713 441 0.65
714 2 0.00
715 1 0.00
717 8 0.01
718 65 0.10
719 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACAACAACAAATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTATTCCTCGGGGCACCATCGCCAGAGCATCGCCACAGA
ACCTGACCGACGACATTGGGGTTCCGGCGATCGAGGGGGCCGGGAGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAA
TGGGGACACCTTTTTCAAATGGTCACAAATCTTGTACACTTTGAGTTTTTACCTGATTTTTTTGT
GCATGCCAAAAAAAATACAAAGATCACGTCTACCAACTTTGGGGAAAAAACTACTTCCAAAAAAA
TTTGAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
ATCCCGTCTCTCTGGCCAGCGTAATGCTGCCCGCCTGCCCGCCCGCTCGTTTCATCGATTGGCTT
AG
Found at i:15202070 original size:26 final size:26
Alignment explanation
Indices: 15202040--15202092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15202030 GTTGACTTAG
* *
15202040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
*
15202066 GCATACAGAGTCCATTCCCATTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
15202092 G
1 G
15202093 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:15202979 original size:26 final size:26
Alignment explanation
Indices: 15202949--15203001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15202939 GTTGATTTAG
15202949 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15202975 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15203001 G
1 G
15203002 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15203886 original size:26 final size:26
Alignment explanation
Indices: 15203856--15203908 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15203846 GTTGATTTAG
15203856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15203882 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15203908 G
1 G
15203909 ATCACACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15205586 original size:878 final size:876
Alignment explanation
Indices: 15200292--15205964 Score: 6884
Period size: 878 Copynumber: 6.4 Consensus size: 876
15200282 GTCAGTTGGC
* * ** * * ** *
15200292 TTAGGCATAC-AGAGTTTATTCCCAGTCTAAGATCAGACTGGACCGTGGGTTACAACAGCAAATG
1 TTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * *
15200356 CTGGGCTCGGGCTTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
65 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
* *
15200421 GAAGAACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GAGGGGTGTGCGCACAT
130 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAG-GGGGTGTGCGCACAT
** * *
15200485 GATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGA
* * * *
15200550 ACTGACACCACCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
15200615 TGAAATGGGGACA-TTTTGTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTG-AT
324 TGAAATGGGGACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
15200678 TTTTTTGTGCATGCCAACAAAACTACAAAGATCACGTCTACCAAGTTTGGGG-AAAAAACTCCTT
388 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAA-TCCTT
* * * * * *
15200742 CCGAAAAAATTTGAAAAAATCCCGAACCGCAAAAGGTTTCCAAAATCGTGAAAAATAGAGAACGA
452 CCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* * *
15200807 GTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
517 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAA
* ** *
15200872 AAATGGCATTGGCATGTAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
582 AAATGGCATTGGCA-GCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
15200937 AGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCTGCCTGCCTGCCCGCCCGCTCGTTTCAT
646 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCGT
* * * * *
15201002 CGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-AGGACCAAACCGAGGGTTGCGGC
711 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTACGGT
* * * * * * *
15201066 AGCAGGATCGACAGCACATAGAGGGGGACCCGACCAATCCCCGGCTTACGTATCCCGCCCGTCTG
775 AGCAGGATCGGCACCACA-AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * ** * * *
15201131 GTCGGTTGAGCGCCCACATGCTCGTTTCGTGGGTTGAC
839 GCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGAT
* * * *
15201169 TTAGGAATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACGGCAGCACATG
1 TTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * * * * * * ** *
15201233 CTGGGCTCGGCCATGTGTTGGTGTCGTATTTTTCTTCATCGGGCCACCATCATAAGAGCATCGCC
65 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
* * *
15201298 AGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATTGGGGGGGCCGAGGGGGGTGTGCGCACAT
130 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGA-GGGGGTGTGCGCACAT
* *
15201363 GATGTACGATGGGTGTTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGA
* *
15201428 ACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
15201493 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTAAATT
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
15201558 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAAATCCTTCC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCC
* *
15201623 GAAAAAGTTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
454 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* **
15201688 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGTGATAAAA
519 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAA
15201753 ATGGCATTGGCATGCAAAAATATTAAA-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
584 ATGGCATTGGCA-GCAAAAATA-TAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** *
15201817 GCTTGCGCATCCCGTCTCTTTGGTCGGTGCGGTGCCCG-CTCACCCGCCCGCCCACTCGTTTCGT
647 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-GCCCGCCCGCCCACTCGTTTCGT
* *
15201881 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTA
711 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTA
* * * *
15201946 GC---A-C-G------TAGAGGGGGACCCGATCGATCCTCGGCTTGCGTATCCCACCCCTCTGGC
776 GCAGGATCGGCACCACAAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
15202000 CGACTGAGCACCCGTACGCTCGATTCATGGGTTGAC
841 CGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGAT
*
15202036 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCCATTCTAAGATCGGACC
1 TTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C----A---GA-C
* *
15202101 GGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
44 ----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
15202166 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCGTTGGAGTTTCGGTGATCAGG
105 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
*
15202231 GGGGCCGAGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCA
170 GGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCA
* *
15202296 CCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTT
235 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
15202361 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCGAATGGTCACAAAATCTTGT
300 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
15202426 ACACTTCGAGTTTTTAGCTGAAGTTTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTA
365 ACACTTCGAGTTTTTAGCTGAA--TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* *
15202491 -CAACGTTTGGGGCAAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCAAACC-CAAAAAGTTTC
428 CCAA-GTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
* *
15202554 AAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
492 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
15202619 CATTGTATGAATTTACATGCGATAAAAATGGCATTGGCATGCAAAAATATTAAGATATGCCTAAA
557 CATTGTATGAATTTACATGCCATAAAAATGGCATTGGCA-GCAAAAATATAAAGATGTGCCTAAA
* *
15202684 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCC-ACGTAGTGCCCG
621 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGGCGTAGTGCCCG
* * * *
15202748 CCCGCCCGCCCACCCGTCCACTCGTTTCGTCGGTTGGCTTGGGCATATGGAGTTCATTCCCAGTC
685 CCTGCCCG----CCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * *
15202813 TAAGATCAGACC-GAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAA-AAGGGAACCCGAT
746 TAAGATCAGACCAG-ACCGAGGGTTACGGTAGCAGGATCGGCA-C-CACAAGAGGGGGACCCGAT
*
15202876 CGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
808 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
15202941 TGAT
873 TGAT
15202945 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCAGACC
1 TTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------CAGA-C
* *
15203010 GGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGGGCTGGTGCCGCATTTTTCTTC-TC
44 ----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-
* * * * * *
15203074 CGGGGCACCATCATCGGAGCATCACAGGAGAACCTAATCGACGACGTTGGGGTTCCGGCGATCGG
104 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
* * *
15203139 GGGGGCCGAGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTACTT-GCCCTGATATTTGCC
169 GGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
15203203 ACCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
234 ACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
15203268 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCGAATGGTCACAAAATCTTG
299 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
15203333 TACACTTCGAGTTTTTAGCCGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
364 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * **
15203398 GACA-TTTGGGGCAAAAAAAACCTTTCGAAGGAATTTTAAAAAATCTCGAACC-CAAAAAGTTTC
429 CA-AGTTTGGGGC-AAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
15203461 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
492 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** * *
15203526 CATTGTATGAATTTACATGTGATAAAAATGGCATTGGCATGCAAAAACATTAAGATGTGCCTAAA
557 CATTGTATGAATTTACATGCCATAAAAATGGCATTGGCA-GCAAAAATATAAAGATGTGCCTAAA
* * *
15203591 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGCAGTGCCCGC
621 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
*
15203656 CTGTCCGCCCGCCCGTCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
686 C--T--GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
15203721 AAGATCGGACC-GAACTGATGGTTGCGGTAGCAGGATTGGCAGCACACAA-AAGGGGACCC-AGT
747 AAGATCAGACCAG-ACCGAGGGTTACGGTAGCAGGATCGGCA-C-CACAAGAGGGGGACCCGA-T
* * * *
15203783 CGATCCTCGGCTTGCTCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCATTTCATGGGT
808 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
15203848 TGAT
873 TGAT
*
15203852 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCACACC
1 TTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C--AG-----A-C
** * *
15203917 GGATCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCC
44 ----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
15203982 GGGGCACCATCTTCGGAGCATCACAGGAGAACCTGACCGGCGACGTTGGGGTTCCGGCGATCGGG
105 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
* * * *
15204047 GGGGCTGAGGGGGTGGGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTGATATTGGCCA
170 GGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCA
* *
15204112 CCTATCCGTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
235 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
15204177 GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAAACTTTTTTCGAATGGTCACAAAATCTTGT
300 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
15204242 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACATAAATACAAGGATCACGTCTACC
365 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * * **
15204307 AAGTATGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGATCCATAAAAAGTTTCAAA
430 AAGTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
* * * *
15204372 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCGCATGAAGGCTTAAGGGACCAT
495 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
15204437 TGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
560 TGTATGAATTTACATGCCATAAAAATGGCATTGGCA-GCAAAAATATAAAGATGTGCCTAAACCC
* ** ***
15204502 ACCTATCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGGCGTAGTGTTTG-CTC
624 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-
* * *
15204566 GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
688 GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * **
15204631 GGATCGGACCAAGGGTTACGATACCAGGATCGGCAGCATGTAGAGGGGGACCC-AGTCGATCCCC
753 AGACCAGACCGAGGGTTACGGTAGCAGGATCGGCACCA-CAAGAGGGGGACCCGA-TCGATCCCC
* ** * * * * * *
15204695 GGCTAGCGCATCCCGCTTCTCGGGCAGGCTGAGCGCTCGCATGCTCGTTTCGTGGGTTGAT
816 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGAT
* *
15204756 TTAGGCATACTAAGTTCATTCCCATTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
1 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
* * *
15204821 TGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCG
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* * * *
15204886 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTACGCACATGA
131 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGA
** * *
15204951 TGTGCGATGGGTGCTTTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAG
196 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAAC
* * * *
15205016 TCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCTATTAAAGTGTCTA
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15205081 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTTAATTTT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
15205146 TTTGTGCATGCCAACAAAAATACAAGGAACACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCAA
391 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCGA
* * * * *
15205211 AAAAAGTTTAAAAAATCACGAACCGTAAAAACTTTCAAAAATCATGAAAAATAGAAAATGAGTCA
456 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
* * *
15205276 TCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAAT
521 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAAT
*
15205341 GGCATTGGCA-CATAGAAATATAAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGC
586 GGCATTGGCAGCA-A-AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** * *
15205405 TTGCGCATCCTGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCGCCTGCTCGTATCATCGG
649 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCGTCGG
* * * * * *
15205470 TTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGATCGTGGGTTATGGTAGTA
714 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCA
* * * *
15205535 GGATCGGCACCACGAAGAGGGGGACTCC-ACCGATCCCCAGCTTGTGCATCCCGCCCCTATGGCC
779 GGATCGGCACCAC-AAGAGGGGGAC-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
15205599 GGCTGAGATG---G-A-GTTCATTCCCA------G-T
842 GGCTGAG-CGCCCGTACGCTCGTT-TCATGGGTTGAT
* * ** * *
15205624 TTAAGCATACGGAGTTCATTCTTAGTCTAAGATCGGATC-GAACCAAGGGTTGCGGCAGCACATG
1 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATG
* * * **
15205688 CTAGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACAATCGTCGGAGCATCGTC
65 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
* * * * * *
15205753 GGAGAGCCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-AGGGGGTGTACGCACATA
130 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATG
* * *
15205817 ATGTGCGATGGGTACT-ATA-TT-G--------TT--CC-CCTATCCCTCATCAAAACTCGAGAA
195 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAA
* * *
15205868 CTCATACCCCCTTAAAGAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
260 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
15205933 GACATAGGGACACTTTTTTCAAATGGTCACAA
325 GAAATGGGGACACTTTTTTCAAATGGTCACAA
15205965 GATTTTACAG
Statistics
Matches: 4262, Mismatches: 432, Indels: 228
0.87 0.09 0.05
Matches are distributed among these distances:
853 111 0.03
854 2 0.00
856 2 0.00
864 1 0.00
865 2 0.00
866 2 0.00
867 129 0.03
868 158 0.04
869 2 0.00
871 1 0.00
874 6 0.00
875 3 0.00
876 4 0.00
877 151 0.04
878 894 0.21
879 354 0.08
880 10 0.00
881 1 0.00
882 1 0.00
883 1 0.00
885 1 0.00
888 4 0.00
889 1 0.00
890 1 0.00
892 200 0.05
893 307 0.07
894 86 0.02
896 1 0.00
897 80 0.02
900 4 0.00
901 4 0.00
902 6 0.00
903 4 0.00
904 183 0.04
905 2 0.00
906 49 0.01
907 643 0.15
908 564 0.13
909 274 0.06
910 1 0.00
911 5 0.00
912 1 0.00
913 1 0.00
915 3 0.00
916 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCGA
AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAAT
GGCATTGGCAGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGG
ATCGGCACCACAAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCGCCCGTACGCTCGTTTCATGGGTTGAT
Found at i:15207267 original size:711 final size:707
Alignment explanation
Indices: 15206307--15207784 Score: 2149
Period size: 711 Copynumber: 2.1 Consensus size: 707
15206297 CGTGGGTTAA
* * * * * *
15206307 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GGATCGGACCAATGGTTGCAGTAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
*
15206371 CTGGGCTCGGGCATGTGCTGGTGCCATATTTTCCTTCATCGGGGCACCATCGCCAGAGCATCACC
66 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTCCTTCATCGGGGCACCATCGCCAGAGCATCACC
* * * * * * * *
15206436 AGAGAACTTGACTGACGGCATTGGGGTTTCAGTGATCGAGGGGGCCGGGGGGGTGTGCGCACATG
131 AGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGCCGAGGGGGTGTACACACATA
* * * *
15206501 ATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
196 ATGTGCGATGGGTACTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAAACTCAAGAA
* * * *
15206566 CTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTTT
261 CTCACACCCCCTCAAAAAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
15206631 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTT
326 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTT
*
15206696 TTTTGGGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTC-AAAACT-CGTT
391 TTTTGGACATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAACTCCGTT
* * * *
15206759 CCAAAAAATTTTTAA-AAGATCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACG
454 CCAAAAAA-TTTTAAGAA-AACCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
**
15206823 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
517 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
15206888 AAAATTGCATTGACACGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCA
582 AAAATGGCATTGACACGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCA
* * * *
15206953 CGGCTTGCGCTTCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCACGTTTCGTCAGTCGG
647 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGAAGT----GCCCACCCGCACGTTTCGTCAGTCGG
* *
15207018 CTTAGGCATATGGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * * * * ***
15207083 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTT
66 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTCCTTCATCGGGGCACCATCGCCAGAGCATCACC
* * *
15207148 GGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCC-AGGGGGTGTACACACAT
131 AGAGAACCTGACCGACGGCATTGGGGTTCCAG-CGATCGAGGGGGCCGAGGGGGTGTACACACAT
*
15207211 AATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAAACTCAAGA
195 AATGTGCGATGGGTACTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAAACTCAAGA
* *
15207276 ACTCACACCCCCTTAAAAAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
260 ACTCACACCCCCTCAAAAAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
15207341 TGAAATGGGGACACTTTTTTCAGATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGACTT
325 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATT
* * *
15207406 TTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTC
390 TTTTTGGACATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCGTTC
* * * * *
15207471 GAAAAAATTTTAAGAAAACCCGAACTATAAAAAGTTTCGAAAGTCATGAAAAATAGAAAATGAGT
455 CAAAAAATTTTAAGAAAACCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
15207536 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
520 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
15207601 ATGGCATTGGCACGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGG
585 ATGGCATTGACACGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCACGG
* * *
15207666 CTTGCGCATCCCGTCTCTCTGGCCGGCGAAGTGCCCACCCGCTCGTTTCGTCGGTTGG
650 CTTGCGCATCCCGTCTCTCTGGCCGGCGAAGTGCCCACCCGCACGTTTCGTCAGTCGG
** * *
15207724 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACTGAGGGTTACGGCAGCA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
15207785 GGATCGATCA
Statistics
Matches: 684, Mismatches: 78, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
706 77 0.11
709 1 0.00
710 240 0.35
711 249 0.36
712 117 0.17
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (707 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCACATTTTCCTTCATCGGGGCACCATCGCCAGAGCATCACC
AGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGCCGAGGGGGTGTACACACATA
ATGTGCGATGGGTACTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAAACTCAAGAA
CTCACACCCCCTCAAAAAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTT
TTTTGGACATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCGTTCC
AAAAAATTTTAAGAAAACCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGACACGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGGCGAAGTGCCCACCCGCACGTTTCGTCAGTCGG
Found at i:15209857 original size:531 final size:532
Alignment explanation
Indices: 15208808--15209882 Score: 1726
Period size: 531 Copynumber: 2.0 Consensus size: 532
15208798 GTGTGCGCAC
* *
15208808 ATGATGTGCAATGCATGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATGAAACCTCGA
1 ATGATGTGCAATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
15208873 GAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCAACTAAAATG
* *
15208938 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAA
131 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCAAGTTTTTAGCTCAA
*
15209003 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCGAATTTGGGGCTAAAACTCCTT
196 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCGAATTTGGGGCCAAAACTCCTT
* * *
15209068 CCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
261 CCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAA
* * *
15209133 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTGTGAATTTACAAGCCATAA
326 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* ** *
15209198 AAATGGCATAGGCATGTAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTC
391 AAATGGCATAGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCTC
*
15209263 GGCTTGCGTATCCCGTCTCTCTGGTCGGGGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGT
456 GGCTTGCGTATCCCGTCTCTCTGGTCGGGGTAGTGCCCGCCTGCCCGCCCGCTCATTTCGTCGGT
15209328 TGGCGTAGGCAT
521 TGGCGTAGGCAT
* **
15209340 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
1 ATGATGTGCAATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* **
15209405 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTACTAAAATG
66 GAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCAACTAAAATG
* * *
15209470 TCTGAAATGGGGGCACTTTTTTTC-AATGGTCACAAAAT-TTTGTACACTTCAAGTTTTTTGCTC
131 TCTAAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTT-TACACTTCAAGTTTTTAGCTC
* * *
15209533 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC-AAGTTTGGGTCCCAAACTC
194 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCGAA-TTTGGGGCCAAAACTC
* * * *
15209597 CTTTC-AAAATATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
258 CTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
* * *
15209661 TAAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCA
323 CAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
15209726 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATC
388 TAAAAATGGCATAGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATC
*
15209791 CTCGGCTTGCGTATCCCGTCTCTCTGGTCGGGGTAGTGCCCGCCTGCCCGCCTGCTCATTTCGTC
453 CTCGGCTTGCGTATCCCGTCTCTCTGGTCGGGGTAGTGCCCGCCTGCCCGCCCGCTCATTTCGTC
15209856 GGTTGGCGTAGGCAT
518 GGTTGGCGTAGGCAT
* *
15209871 ATGGTGTTCAAT
1 ATGATGTGCAAT
15209883 CCCAGTCTAA
Statistics
Matches: 498, Mismatches: 42, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
531 264 0.53
532 227 0.46
533 7 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (532 bp):
ATGATGTGCAATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCAACTAAAATG
TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCAAGTTTTTAGCTCAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCGAATTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAA
GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATAGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCTC
GGCTTGCGTATCCCGTCTCTCTGGTCGGGGTAGTGCCCGCCTGCCCGCCCGCTCATTTCGTCGGT
TGGCGTAGGCAT
Found at i:15210078 original size:26 final size:26
Alignment explanation
Indices: 15210026--15210078 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15210016 GTTGACTTAG
* **
15210026 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATGGAGTTCATTCCAAGACTAA
15210052 GCATATGGAGTTCATTCCAAGACTAA
1 GCATATGGAGTTCATTCCAAGACTAA
15210078 G
1 G
15210079 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCAAGACTAA
Found at i:15210941 original size:26 final size:26
Alignment explanation
Indices: 15210911--15210966 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
15210901 TGGGTTGATT
15210911 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
15210937 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15210963 TAAG
1 TAAG
15210967 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15212746 original size:26 final size:26
Alignment explanation
Indices: 15212710--15212762 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15212700 GTTGACTTAG
*
15212710 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15212736 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15212762 G
1 G
15212763 ATCAAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15213143 original size:889 final size:890
Alignment explanation
Indices: 15209340--15213684 Score: 5395
Period size: 888 Copynumber: 4.9 Consensus size: 890
15209330 GCGTAGGCAT
*
15209340 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
** * *
15209405 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTACTAAAATG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * *
15209470 TCTGAAATGGGGGCAC-TTTTTTTC-AATGGTCACAAAATTTTGTACACTTCAAGTTTTTTGCTC
131 TCTGAAAT-TGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG-TT
* * * *
15209533 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCCAAACTCC
194 GATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
15209598 TTTC-AAAATATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAAT
259 TTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * * *
15209662 AAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCAT
324 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * *
15209727 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCC
389 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
15209792 TCGGCTTGCGTATCCCGTCTCTCTGGTCGGGGTAGTGCCCGCCTGCCCGCCTGCTCATTTCGTCG
454 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * * *
15209857 GTTGGCGTAGGCATATGGTGTTCAATCCCAGTCTAAGATCAGATCAGACC-ATGGGTTGTGGCAG
519 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA-GGGTTGCGACAG
* * * * * *
15209921 AAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGTTCCCCGGCTTACACATCCCACCCCTCTGGC
583 CAGGATCGGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-
* ** * *
15209986 CCA-CTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTTT
646 CCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
15210050 AAGCATATGGAGTTCATTCCAAGACTAAGATCGGACCGGACCGAGGGCTGCGGCAGCACATGCT-
711 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGTAGCACATGCTA
* * *
15210114 GGAATCGGGCATGTG-TCGGTGCTGCATTTTTCCTCGCCGGGGCACCATCGCCGGA-CAACCTTA
776 GG-CTCGGGCATGTGCT-GGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAACCTAA
* ** *
15210177 CC--AGTGGTATT-GAGGTTTCGATGATCGGGGGGA-AGGGGGGGTGTGCGCAC
839 CCTGAGCGACATTAG-GGTTTCGGTGATCGGGGGGACA-GGGGGGTGTGCGCAC
* **
15210227 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
15210292 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* ** *
15210357 TCTGAAATTGGG-ACA-TTTTATTCTAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTG
131 TCTGAAATTGGGCACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTG
* *
15210420 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCA
195 -ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
*** * *
15210485 TTTTGAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
259 TTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
15210550 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGCATGATTTTACAAGCCAT
324 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * * *
15210615 AAAAATGGCATTGGCATGCAGATATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCG
389 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
15210680 ACGGCTTGCGCATCCCGTCTCTCAGGCCGGCGTAGTGCCCGCCCCCCCACCCGCTCATTTCGTCG
454 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * *
15210745 GTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACTGAGGGTTGCGACAGC
519 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGC
* * ** * *
15210810 AGGATCGACAGCATGCAGAGGGGGACCCTGTCGATCTTCGGCTTGCTCATACCGCCCCTCTGG-C
584 AGGATCGGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * * *
15210874 AGGTTGGGCACCCGTATGCTCATTTCATGGGTTGATTTAAGCATACGGAGTTCATTCCCAGTCTA
648 A-GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
15210939 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGCGTTACGGTAGCACATGCTAG
712 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGTAGCACATGCTAG
* * *
15211004 TCTCGGGCATGTGCTGGTGCTGTATTTTTCTTC-CTCGGGGCACCATCGTCGGAGCATCACCGGA
777 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGC-CGGGGCACCATCGCCGGAGCA--ACC---
* * * * *
15211068 GAACCTGACAGGCGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCAC
836 TAACCTG--A-GCGACATTAGGGTTTCGGTGATCGGGGGGACAGGGGGGTGTGCGCAC
15211126 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* ** * *
15211190 GAACTCACA----C----AGAGCATTTAAGATTTTACAGGTTTGCTGTGAGTAGCAATTGAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * **
15211247 TCTGAAA-TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTCGCTCA
131 TCTGAAATTGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG-TTG
*
15211311 ATATTTTTGTGCATGCCAACAAAAATACAAGGATCACTGTCTACCAAGTTTGGGGGCCAAAACTC
195 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTT-GGGGCCAAAACTC
* *
15211376 CTTCCAAAAAAA-TTTAAAAAATCCCGAACCGCCAGGAAAGTTTCAAAAATCATGAAAAATAGAA
258 CTTCCAAAAAAATTTTAAAAAATCCCGAACCG-CA-AAAAGTTTCAAAAATCGTGAAAAATAG-A
* * *
15211440 AAATGAGTCGTCTTGCCATGAAACTTCATGTGAACGG-TTAAGGGAACCATTGTATGGAA-TTAG
320 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAA-GGCTTAAGGG-ACCATTGTAT-GAATTTAC
*
15211503 AAGCCAT--AAATGGCATTGGCACACGAGAAATATGAAGATGTACCTAAACCCACCTACC-CCCG
382 AAGCCATAAAAATGGCATTGGCACAC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-
* * * *
15211565 TATC-ATCTACGGCTTGCCGCATCCCGCCTCT-TGGCCCGGCGTACGTGCCCGCCCGTCCGGCCG
445 TATCGATCCACGGCTTG-CGCATCCCGTCTCTCTGG-CCGGCGTA-GTGCCCGCCCGCCCGCCCG
* * * * * *
15211628 CTCGTTTTGTCGGTTGTG-TTAGGCATACGAAAGTTCATTCCTAGTCTAAGATCGAACCAAACCG
507 CTCGTTTCGTCGGTTG-GCTTAGGCATACG-GAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
* * * *
15211692 AGGGTTGCGAGAGCAAGATCGGCAGCACGTAGAGGGGGACCCGTCCGATCCCCGACTTGCGCATC
570 AGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGT-CGATCCCCGGCTTGCGCATC
* * * * * * *
15211757 CCGCCCCTCTGGCC-GATTGAGTG-CCGTACACTCGTTTCGTGGGTTGACTTAGGCATGCAGAGT
634 CCGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
15211820 TCATTCACAATCTAAGCATATGGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGCTGCA
698 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCG
* * * *
15211885 GTAGCACATGCTAAGCTCGGGGATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCG
763 GTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCCG
* * * * * *
15211950 GAGCATCACTGGAGAACCTGACCGGCGGCATTAGGGTTCCGGTCATCGGGGGTGCCAGAGGGGTG
828 GAGCAAC-CT----AACCTGA---GCGACATTAGGGTTTCGGTGATCGGGGG-GACAGGGGGGTG
15212015 TGCGCAC
884 TGCGCAC
*
15212022 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* * *
15212087 GAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
15212152 TCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA
131 TCTGAAATTGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTG-
* * *
15212216 ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCT
195 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
15212281 TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
260 TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * * * * **
15212346 AGTTGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGAACCGTTGTATGAATTTAAAAGTGAT-
325 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
15212410 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCA
390 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
** * *
15212475 CGGCTTGCGTGTCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCGCCCACCCGCCCGCTCGTTTCG
455 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-T---GCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * *
15212540 TCGGTTGGCTTAGGCATAGGGAGTTTATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGAT
516 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGAC
* * * **
15212605 AGCAGGATAGGTAGCACGTAGAGGGGGACCCAGTCGATCGTCGGCTTGCGCAT-CC-CCCCTCTG
581 AGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
15212668 GCCAGCTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTC
645 GCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * *
15212733 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTGCGGCT-GCACATGC
710 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGG-TAGCACATGC
* * ***
15212797 TGGGCTCGAGCATGTGCTGGTG-TCGCATTTTTCTTTATCGGGGCACCATCGCCGGAG-AACCTA
774 TAGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAACCTA
* * * *
15212860 ACC-GA-CGATATTAGGGTTTCGGTGATCTGGAGGG-CTGGGGGGTGTGCGCGC
838 ACCTGAGCGACATTAGGGTTTCGGTGATC-GGGGGGACAGGGGGGTGTGCGCAC
15212911 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* * * * *
15212976 GAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGGCTGTAACCATTAAAGTC
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
15213041 TCT-AAATTGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGA
131 TCTGAAATTGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGA
* * *
15213105 TTTCTTTTGTGCATGCCAACAAAAATACAACGATCACATCTACCAAGTTTGGGACCAAAACTCCT
196 TTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* ** *
15213170 TCCGAAAAAATTTTAAAAAATCCCGAAATGCAAAAAGTTTCAAAAAATCGTGAAAAATAGTAAAC
260 TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAAC
* * *
15213235 AAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCAT
324 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** *
15213300 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCC
389 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
15213365 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCTCGCCTGCCCGCCCACTCGTTTC
454 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTC
* * * *
15213430 GTCGGATGGCTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATTGAATC-GAACCGAGGGTTGCG
515 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCG
** * * *
15213494 TGAGCAAGATCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGTGCATCCCGCCCCTC
579 ACAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
15213559 TAGCCAGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
643 TGGCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
** ** * * * *
15213624 TCTAAGCATACAGAGTTCATTCATAGTCTAAGATCGGACCAGGCCGGGGGTTGCGGCAGCA
708 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGTAGCA
15213685 GGATTGGCAG
Statistics
Matches: 3002, Mismatches: 361, Indels: 184
0.85 0.10 0.05
Matches are distributed among these distances:
885 6 0.00
886 8 0.00
887 232 0.08
888 489 0.16
889 297 0.10
890 225 0.07
891 243 0.08
892 24 0.01
893 174 0.06
894 102 0.03
895 247 0.08
896 154 0.05
897 34 0.01
898 31 0.01
899 83 0.03
900 94 0.03
901 221 0.07
902 109 0.04
903 67 0.02
904 31 0.01
905 131 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATTGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAG
GATCGGCAGCACGCAGAGGGGGACCCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGC
TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
TATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGTAGCACATGCTAGGCTC
GGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAACCTAACCTGAGC
GACATTAGGGTTTCGGTGATCGGGGGGACAGGGGGGTGTGCGCAC
Found at i:15213639 original size:26 final size:26
Alignment explanation
Indices: 15213603--15213655 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15213593 GTTGACTTAG
*
15213603 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
15213629 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
15213655 G
1 G
15213656 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:15214694 original size:26 final size:26
Alignment explanation
Indices: 15214665--15214717 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15214655 GTTGACTTAG
15214665 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* **
15214691 GCATACGGAGTTCGTTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15214717 G
1 G
15214718 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15214845 original size:185 final size:186
Alignment explanation
Indices: 15214506--15214924 Score: 533
Period size: 185 Copynumber: 2.3 Consensus size: 186
15214496 GTTGGCTTAG
* * ** * *
15214506 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAATCGAGGGTTG-TGAGAGCAAGATCGGC
1 GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGAGAGCAAGATCGGC
* * * * *
15214570 AGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCAGCTTAGCA
66 AGCACGTAGAGGGGGACCAGACCGATCCTCGACTTACGCAGCCCGCCCCTCTAGCCAGCTGAGCA
* **
15214635 CCCGTACGTTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15214691 GCATACGGAGTTCGTTCGTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGA-AGTAGGATCGGC
1 GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGAGAGCAAGATCGGC
* * * *
15214755 AGCGCGTAGAGGGGGATCAGACCGATCCTCGACTTACGCAGCCCGCCCCTCTGGTC-GACTGAGC
66 AGCACGTAGAGGGGGACCAGACCGATCCTCGACTTACGCAGCCCGCCCCTCTAGCCAG-CTGAGC
* * *
15214819 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 ACCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15214876 GCATAC-GATGTTCATT-GCCAGTCTAAGATCGGACCGGACTGAGGGTTGC
1 GCATACGGA-GTTCATTCG-CAGTCTAAGATCAGACCGGACCGAGGGTTGC
15214925 GGCAGCACAT
Statistics
Matches: 201, Mismatches: 29, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
184 4 0.02
185 195 0.97
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (186 bp):
GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGAGAGCAAGATCGGC
AGCACGTAGAGGGGGACCAGACCGATCCTCGACTTACGCAGCCCGCCCCTCTAGCCAGCTGAGCA
CCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15214888 original size:26 final size:26
Alignment explanation
Indices: 15214850--15214902 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15214840 GTTGACTTAG
15214850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15214876 GCATAC-GATGTTCATTGCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
15214902 G
1 G
15214903 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15216697 original size:26 final size:26
Alignment explanation
Indices: 15216645--15216697 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15216635 GTTAACTTAG
*
15216645 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCACTATAA
*
15216671 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTATAA
15216697 G
1 G
15216698 ATCGGATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTATAA
Found at i:15218462 original size:26 final size:26
Alignment explanation
Indices: 15218425--15218479 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
15218415 TGGGTTGACT
*
15218425 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGGC
*
15218451 TAAGCATGCGGAGTTCATTCCCAGGC
1 TAAGCATACGGAGTTCATTCCCAGGC
15218477 TAA
1 TAA
15218480 AATCAAACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGGC
Found at i:15218799 original size:900 final size:897
Alignment explanation
Indices: 15214691--15222677 Score: 8275
Period size: 903 Copynumber: 8.9 Consensus size: 897
15214681 CCCAGTCTAA
* ** * * * *
15214691 GCATACGGAGTTCGTTCGTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGAAGTAGGATCGGCA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
15214756 GCGCGTAGAGGGGGATCAGACCGATCCTCGACTTACGCAGCCCGCCCCTCTGG-TCGACTGAGCG
65 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCG
*
15214820 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
15214884 TGTTCATTGCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
194 -GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
15214949 TGTGCTGGTGCCACATTTTTCTTCGTCG-GTGCACCATCGAC-GGAGCATCGCCAGAGAACTTGA
258 TGTGCTGGTGCCGCATTTTTCTTCGTCGAG-GCACCATC-ACTGGAGCATCACCGGAGAACCTGA
** *
15215012 CCGACGGCATTGGGGTTCCGACGAT--AAGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGG
321 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGG
** * *
15215075 TGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCCCACCAAACCTCGAGAACTCACACCCCCT
385 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
15215140 TAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
15215205 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
515 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** * * *
15215269 CAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGTTCAAAACTCTTTTCGAAAAAATTTTAC
580 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA-
** * * * *
15215334 AAAATATCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATGA
644 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* **
15215399 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATACCATTGGCAT
709 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
15215464 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCAAGGCTTGCGCATCCCG
774 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
15215529 TCTCTCTGGCCGGCGCAGT-G-CC-T--GCCTGCCCGCTCGTTTCGTCGATTGGCTTAG
839 TCTCTCTGGCCGACGTAGTGGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * ** *
15215583 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGCAGGATTGGCA
1 GCATA-CGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
15215648 GCACGCAGAGGGGGACCCGGCTGATCCCC-AGCTTGCGCATCTCGCCCCTCTAGCCGGCTGAGCG
65 GCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
* * * *
15215712 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCTAGTCTAAGCATACGGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * *
15215777 GTTCATTCCCAGTCCAAGATCAGACCAGATCGAGGGTTGCGACAACACATGCTGGGCTCGAGCAT
194 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
15215842 GTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC-GTCAGAGCATCGCCGGAGAACCTAACC
259 GTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACT-GGAGCATCACCGGAGAACCTGACC
* * * * *
15215906 GACGACATTGGGGTTTCAACGATCGGGGGGCCGAGGGGGGTTGTACGCACATGATGTGCGATGGG
323 GACGGCATTGGGGTTCCGACGATCGGGGGG--GCGGGGGG-TGTGCGCACATGATGTGCGATGGG
* * *
15215971 TGTTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACACCCCCT
385 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
15216036 CAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
** *
15216101 CTTTTTT-TTATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
515 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
** ** ** *
15216165 CAACAAAAATACAAGGATCACAACTACCAAGTTCAGGGCCAAAACAGCTTCCGAAAAAATTTTGA
580 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-A
* *
15216230 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGTAAAATAGAAAACGAGT-GTCTTGCCATGA
644 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
15216294 AACTTCACGTGAAGGATTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
709 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * *
15216359 ACAGAAATATGAAGATGAGCCTAAACCCAACTACGACCCTATCGATCTACGGCTTGCGCATCTCG
774 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
15216424 CCTCTCTGGTCGACTTAGTGCCTGCCAGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
839 TCTCTCTGGCCGACGTAGTG---GCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * * * * *
15216486 CCATACCTAGTTCATTCCTAGTCTAAGATCGGACTGAACTAAGGTTTGCGGTAGAAGGATCGGTA
1 GCATA-CGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * *
15216551 ACACGCAGAGGGGGACCCGACTGATCCCCGGCTTACACATCCCGCCCCTCTGGCCGGTTGAGCGC
65 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
* * * *
15216616 CCGCACGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* ** * * * *
15216681 TTCATTCCCACTCTAAGATCGGATAGAATCGAAGGTTGCGGCAGCACATGCTTGGCTCGGGCATG
195 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* *
15216746 TGTTGGTGCCGCATTTTTCTTCG-CCAGGGCA-C--CA-T----CATCA---GAGAACCTGACCG
260 TGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCACTGGAGCATCACCGGAGAACCTGACCG
* * * * ** *
15216799 GCGGCATTAGGATTCCAACGCCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
324 ACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
15216864 GGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
389 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
15216929 GAGCATTTGAGATTTTACAGGTTTGCTCCCAATAGCTATTAAAGTGTTTGAAATGGGGACACTTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
15216994 TTTCAAATGGTGACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
519 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * ** * *
15217059 AAAAATACAGGGATCATGTCTACCAAGTTTGAAGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
584 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAA
*
15217124 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACT
648 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
15217189 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
713 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
15217254 AAATATGAAGATGTGCCTAAACCTACCTACCACCCAATCGATCCACGGCTTGCGCATCCCATCTC
778 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
15217319 TCTGCCCGACGTAGT-G-CC-T--GTCCGCCCGCTTGTTTCGTCGGTTGGCTTAG
843 TCTGGCCGACGTAGTGGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * ** *
15217369 GCATACAGAGTTCATTCCCAGTCCAAGATCAGATC-GAATCGAGGGTTATGACAATAGGATCAGC
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGGC
* * **
15217433 AGCACGCAGAGGGGGACCCGACCGA-CCCTCGGCTTACGCATCCTACCCCTCTGGCTGGCTGAGC
64 AGCACGCAGAGGGGGACCCGACCGATCCC-CGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
* * *
15217497 -CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATACAG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * ** * *
15217561 AATCCATTCCCAGTCTAAAATCAGACTGGATTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCT
193 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
** * *
15217626 TGTGCTGGTGGTGCATTTTTCGTCGTCGGGGCACCATCGAC-GGAGCATCACCGGAGAACCTGAC
258 TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC-ACTGGAGCATCACCGGAGAACCTGAC
* *
15217690 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGT
322 CGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGT
15217755 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
386 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
15217820 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCGATTAAAGTGTCTAAAATGGGGACAC
451 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
15217885 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAATTTTTTTTTGCATGCC
516 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
15217950 AAAAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCAAAAAAAATTTTAAA
581 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
** * * *
15218015 AACTCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTTGTCTTGGCATGAA
646 AA-TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
15218080 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATG
710 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
15218145 CAGAAATATGAAGATGTGCCAAAACTCACCTACCACCCTATTGATCCACGG-TTGCGCATCCCGT
775 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
15218209 CTCTCTGGCAGGCGTAGTGCCCGCCCGTCCGCCTGTCCGCTCGTTTTGTCGATTGGCTTAG
840 CTCTCTGGCCGACGTAGTG---GCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
15218270 TCATACGAGTTCATTCCCAGACTAAGATCGGACCGGACTGAGGGTTACGGTAGCAGGATCGGCAA
1 GCATACGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * *
15218335 CACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCC
66 CACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCC
* * *
15218400 CGCACGCTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGT
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * ** * * * * *
15218465 TCATTCCCAGGCTAAAATCAAACCGGACCAAGGGTTGAGGTAGCACATGCTGGGCTCGAGCATCT
196 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * * * * * *
15218530 GCTCGTGACACCTTTTTCTTCATCGAGGCACTATCACTAGAGCATCACTGGAGAGCCTGATCGAC
261 GCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCACCGGAGAACCTGACCGAC
* * * * *
15218595 GGCATTGGGGTTTCGATGATCGGGGGGGCGAGGGGTGTGTGCACATGATGTGCGATGGGTGCTCG
326 GGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
15218660 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGA
391 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
15218725 GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
456 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
15218790 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAA-TTTTTTGTGCATGCCAACAA
521 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
15218854 AAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCATTCCAAAAACGAGTCGTCTTGCC
586 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA--AAT--T-TT---
* * * * * * * ** *
15218919 ATGAAA-CTTC--A-CGT-GAAGGCTT-AAGAGACCATTGTATGAATTTACAT-GAAATAAAAAT
643 A-AAAATC-CCAAACCGTAAAAAGTTTCAA-A-A--ATCG--TGAA---AAATAGAAA-ACGAGT
* * * * * ** *** ** * *
15218977 -GGCATTGGCATGCAGAA-AT-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCA-CCCTA
696 CGTC-TTGCCATG-A-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*** * * * *** ***** * ** * * * *
15219029 TCGAT-CCA-TGGCTTGCACATCCCATCTCTCTG-GCC--GACGTA-GTGCCTGCCCGT-TCGCT
758 AAAATGGCATTGGCATGCAGA-AATATGAAGATGTGCCTAAACCCACCTACC-ACCC-TATCGAT
* * * ** ** ** * ** * * * ** *
15219087 -CACTCGCTCGCTCATTTCGTCGGT-TGGCTTAGGAATACG-GAGTTCATTC-CCAGTCTAAGAT
820 CCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGACG--TA-GTG-GCCCGTCCGCCCG-C-CCGCT
*** * * *
15219148 CGAACCGAAC--TAAGGGTTACG
878 CGTTTCG-TCGGT-TGGCTTA-G
* * * * * *** ** * *
15219169 GCA-GC-AG--GA-TCAGCAGCACTTAGAGGGGGACCCGG-CTGA---TCCCTGGCTTGC-GTAT
1 GCATACGAGTTCATTC-CCAG-TCTAAGA-TCAGA-CCGGACTGAGGGTTGC-GGC-AGCAGGAT
* **** * ** * * * ** * * *
15219224 C--CCGC-C-C--CTCTGG--CCGGCTAAGTGCCCG-C--ACGC-T--TGTTTCCT-GGGTTGAC
60 CGGCAGCACGCAGAGGGGGACCCGACCGA-TCCCCGACTTGCGCATCCCG-CCCCTCTGGCTGGC
* * * * * *** * *
15219274 TTAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCTTACGGAGTTCATTCCCAG--T---
123 TGAGCGC--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
15219326 CA-A---A----A-----A-TC----A---GACTGGACCGAGGGTTTCGGTAGCACATGCTGGGC
186 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** *
15219370 TCGTGCATGTGCTGGTGCCGCATTTTTCTTCGTTGAGGCACCATCGTTGGAGCATCGTCC-GAGA
251 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACTGGAGCATC-ACCGGAGA
* * * *
15219434 ACCTGACCGGCGACATTGGGGTACTGGCGGCAATGGGGTTCTGACGATCGAGGGGCTGAGGGGGG
315 ACCTGA----C--C------G-A----CGGCATTGGGGTTCCGACGATCG-GGGG-GGCGGGGGG
* *
15219499 TGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATC
361 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * ** *
15219564 AAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTATTGCCAGTAGCG
426 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
15219629 ATTAAAGTGTCTGTAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTT
491 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
** * * ** * *
15219694 CCAGCTGAATTTTTTTGTGCGTACCAACAAAAATACAAGGATCATATCTACCAAGTTTAGGTCCA
556 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
15219759 AAAATCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
621 AAACTCCTTCCAAAAAAATTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * * * * *
15219824 AGAAAACGAGTCATCTTGCGATGAAACTTCTCGTGAAGGCCTAAAGGACCGTTGTATGAATTTAC
685 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
15219889 AGGACATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
750 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
15219954 TCGATACACGG-TTGCGCA-CCCGTCTCTCTGGCCGATGTAAT-G--C--CCGCCCGCCCGCTCG
815 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGGCCCGTCCGCCCGCCCGCTCG
*
15220012 TTTCGTCGGTTGGCTTGG
880 TTTCGTCGGTTGGCTTAG
* * * * ** ** * *
15220030 GTATACAGAGTTCATTCCTAATCTAAGATCAAACCGGACCAAGGGTTGCAACAACAGGATCGGTA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
15220095 GCACGCAGAGGGGGACCCGACCAATCCTCGGCTTGAGCATCCCGCCCCTCTGGCTGGCTGAGTGC
65 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
** * *
15220160 CCGCTTGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
15220225 TTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACGGTAGCACATGCTGGGCTTGGGCATG
195 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* *
15220290 TGCTGGTGCCGTATTTTTCTTCG-CGAGGGTACCATCGCCAGAGCATCGCCAGAGCATCACCGGA
260 TGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCAT---C--A-C-T-G---GAGCATCACCGGA
* * * * *
15220354 GAACCTGACC-AGCAGCATTGGGGTTCCGGCGATTAGGGGTGCCGGGGGGCTGTGCGCACATGAT
313 GAACCTGACCGA-CGGCATTGGGGTTCCGACGA-TCGGGGGGGCGGGGGG-TGTGCGCACATGAT
*
15220418 GTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
375 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15220483 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAACTGTATGA
440 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
15220548 AATGGGGACACTTTTTTCAAATGGTCAC-AAATATTGTACACATCGAGTTTCTAGCTGAATTTTT
505 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** *
15220612 TTGTGTGTGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
570 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * ** * *
15220676 AAAGTTTTAAAAAATCCCCAACCGTAAAAAGTTTTGAAAATCGTGAAAAATTGAAAACAAGTCGT
635 AAAATTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
15220741 CTTGCCATGAAACATCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
699 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
15220806 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATTGCTT
764 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
15220871 GCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCGCCCTTCCACCCACCCGCTCGTTTCGTCGGTT
829 GCGCATCCCGTCTCTCTGGCCGACGTAGTG---GCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTT
15220936 GGCTTAG
891 GGCTTAG
* * ** * * * * **
15220943 GCATATGGACTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCCGCAGGATCAACA
1 GCATA-CGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* ** * * *
15221008 GCACGCAGAGCGGGACCCGGTCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGC
65 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
* * * * ** * *
15221073 CCGCATGCTCATTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAATTATACAGAA
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
15221138 TTCATT-CCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGATGCTAGGCTCGGGCATG
195 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * *
15221202 TGCTGGTGCCGCATTTCTCTTCGTCGGGGCACAATCA-TCGGAGCATCATCGGAGAACCGGGCC-
260 TGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACT-GGAGCATCACCGGAGAACCTGACCG
* * ** *
15221265 AGCAGCATTAGGGTTCC-A-G-T-----GATC-GGGGGTGTGCGCACATGATGTGCGAAGGGTGC
324 A-CGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
15221321 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
388 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
15221386 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTT
453 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
15221451 TTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
518 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* **
15221516 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTAT--TGAAAAATTTTCAAA
583 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCAAAAAAATTTT-AAA
* ** * ** * *
15221579 AATTCTGAACTGTAAAAAGTTTTGAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
646 AATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
15221644 CTTCATGTTAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
711 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
15221709 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATCCCGTC
776 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
15221774 TCTCTGGCCGACTTAGT-GCCCGTCCGCCCGCCCGCTCGTTTGGTCGGTTGGCTTAG
841 TCTCTGGCCGACGTAGTGGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
15221830 GCATACAAAGTTTATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * * *
15221895 GCACACAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCACCCATCTGGCCGGCTGGGCAC
65 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
*
15221960 CCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
15222025 TTCTTTCCCAGTCTATGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATG
195 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * * *
15222090 TGCTGGTGTCACATTTTTCTTCATCGGGGCACCATC-GTCGGAGCATCATCGGAGAATCTGACCG
260 TGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACT-GGAGCATCACCGGAGAACCTGACCG
** * * * *
15222154 GTGGCATTGGGGTTTCGGCGATCGGGGGGTCGGGGGGGGTGTGCAG-ACATGATGTGCGGTGGGT
324 ACGGCATTGGGGTTCCGACGATCGGGGGG--GCGGGGGGTGTGC-GCACATGATGTGCGATGGGT
*
15222218 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTT
386 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
15222283 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGAGACAC
451 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
15222348 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCC
516 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * ** * * *
15222413 AACAAAAATACAAGGATCACATATACCGAGTTTGGGGCTGAAACACCTTTCAGAAAAATTTTAAA
581 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * ** * *
15222478 ATATCCCGAACCGCAAAAAGTTTTTAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAA
646 A-ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
15222543 ACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
710 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
15222608 CAGAAATATGAAGAGGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTCGCGCATTCCGT
775 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
15222673 CTCTC
840 CTCTC
15222678 CGCCCGCCCG
Statistics
Matches: 5863, Mismatches: 966, Indels: 524
0.80 0.13 0.07
Matches are distributed among these distances:
850 83 0.01
851 1 0.00
853 1 0.00
856 3 0.00
857 3 0.00
858 13 0.00
859 5 0.00
860 4 0.00
861 9 0.00
862 16 0.00
863 14 0.00
864 11 0.00
865 15 0.00
866 14 0.00
867 33 0.01
868 13 0.00
869 203 0.03
870 79 0.01
871 14 0.00
872 13 0.00
873 10 0.00
874 8 0.00
876 25 0.00
877 2 0.00
878 5 0.00
879 13 0.00
880 5 0.00
881 6 0.00
882 151 0.03
883 129 0.02
884 2 0.00
885 25 0.00
886 2 0.00
887 210 0.04
888 123 0.02
889 153 0.03
890 333 0.06
891 397 0.07
892 367 0.06
893 73 0.01
894 440 0.08
895 199 0.03
896 280 0.05
897 32 0.01
898 31 0.01
899 343 0.06
900 495 0.08
901 265 0.05
902 11 0.00
903 497 0.08
904 68 0.01
905 202 0.03
906 6 0.00
907 3 0.00
908 10 0.00
909 6 0.00
910 8 0.00
911 82 0.01
912 78 0.01
913 197 0.03
914 1 0.00
916 1 0.00
918 2 0.00
919 1 0.00
921 2 0.00
922 17 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCACCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAATCC
CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:15220225 original size:26 final size:26
Alignment explanation
Indices: 15220189--15220241 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15220179 GTTGACTTAG
*
15220189 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15220215 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15220241 G
1 G
15220242 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15220338 original size:11 final size:11
Alignment explanation
Indices: 15220322--15220347 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15220312 GCGAGGGTAC
15220322 CATCGCCAGAG
1 CATCGCCAGAG
15220333 CATCGCCAGAG
1 CATCGCCAGAG
15220344 CATC
1 CATC
15220348 ACCGGAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:15221141 original size:26 final size:25
Alignment explanation
Indices: 15221104--15221152 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
15221094 TGACATAGGC
15221104 ATACGAAGTTCATTCCCAGTCTAATT
1 ATACGAAGTTCATT-CCAGTCTAATT
15221130 ATACAGAA-TTCATTCCAGTCTAA
1 ATAC-GAAGTTCATTCCAGTCTAA
15221153 GATCGGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 10 0.45
27 3 0.14
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (25 bp):
ATACGAAGTTCATTCCAGTCTAATT
Found at i:15222025 original size:26 final size:26
Alignment explanation
Indices: 15221989--15222039 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15221979 GTTGACTTAG
15221989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15222015 GCATACGGAGTTCTTTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15222040 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15222385 original size:899 final size:899
Alignment explanation
Indices: 15218901--15222677 Score: 4806
Period size: 911 Copynumber: 4.2 Consensus size: 899
15218891 ACTCATTCCA
* *
15218901 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAT
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
**
15218966 GAAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
15219031 GATCCATGGCTTGCACATCCCATCTCTCTGGCCGACGTAGTGCCTGCCCGTTCGCTCACTCGCTC
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-G-CTGCCCG-TC-CGC-C-CGCCC
* * * * *
15219096 GCTCATTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACTA
190 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCA
* * ** * * *
15219160 AGGGTTACGGCAGCAGGATC-AGCAGCACTTAGAGGGGGACCCGGCTGATCCCTGGCTTGCGTAT
254 AGGGTTGCAGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * *
15219224 CCCGCCCCTCTGGCCGGCTAAGTGCCCGCACGCTTGTTTCCTGGGTTGACTTAGGCATACGGAGT
318 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * ** *
15219289 TCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCAAAAATCAGACTGGACCGAGGGTTTCG
383 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * * *
15219354 GTAGCACATGCTGGGCTCGTGCATGTGCTGGTGCCGCATTTTTCTTCGTTGAGGCACCATCGTTG
448 GCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * * * *
15219419 GAGCATCGTCCGAGAACCTGACCGGC-GACATTGGGGTACTGGCGGCAATGGGGTTCTGACGATC
513 GAGCATCATCGGAGAACCTGACCAGCAG-CATTGGGGT--T-TCGGCGATGGGG----G--G-TC
*
15219483 GAGGGGCTGAGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
567 -----G--G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
15219548 ACCCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGG
624 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
** * * *
15219613 TTTATTGCCAGTAGCGATTAAAGTGTCTGTAATGGGGACACTTTTTTCAATTGGTCACAAAATCT
689 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * *
15219678 TGTACACTTCGAGTTTCCAGCTGAATTTTTTTGTGCGTACCAACAAAAATACAAGGATCATATCT
754 TGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCT
* * * * * *
15219743 ACCAAGTTTAGGTCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTC
819 ACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTTT
*
15219808 AAAAATCGTGAAAAATAG
882 GAAAATCGTGAAAAATAG
* * * * * * *
15219826 AAAACGAGTCATCTTGCGATGAAACTTCTCGTGAAGGCCTAAAGGACCGTTGTATGAATTTACAG
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
15219891 GACATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
15219956 GATACACGG-TTGCGCA-CCCGTCTCTCTGGCCGATGTA--ATG--C--CCGCCCGCCCGCTCGT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGGCTGCCCGTCCGCCCGCCCGCTCGT
* * * * *
15220013 TTCGTCGGTTGGCTTGGGTATACAGAGTTCATTCCTAATCTAAGATCAAACCGGACCAAGGGTTG
196 TTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG
* * ** * * * *
15220078 CAACAACAGGATCGGTAGCACGCAGAGGGGGACCCGACCAATCCTCGGCTTGAGCATCCCGCCCC
261 CAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * *
15220143 TCTGGCTGGCTGAGTGCCCGCTTGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCT
326 TCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
15220208 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACGGTAGCACA
391 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
* * * *
15220273 TGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCG-CGAGGGTACCATCGCCAGAGCATC
456 TGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGGCACCAT---C---G--TC
* * ** *
15220337 GCCAGAGCATCACCGGAGAACCTGACCAGCAGCATTGGGGTTCCGGCGATTAGGGGTGCCGGGGG
512 G---GAGCATCATCGGAGAACCTGACCAGCAGCATTGGGGTTTCGGCGATGGGGGGT-CGGGGGG
* *
15220402 GCTGTGCGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
573 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
15220467 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
638 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
15220532 CCATTAAACTGTATGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATATTGTACACATCGAGT
703 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
** **
15220596 TTCTAGCTGAATTTTTTTGTGTGTGCC-AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
768 TTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
* *
15220660 CAAAACTCCTTCCAAAAAAGTTTTAAAAAATCCCCAACCGTAAAAAGTTTTGAAAATCGTGAAAA
833 CAAAACTCCTTCCGAAAAA-TTTT-AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAA
*
15220725 ATTG
896 ATAG
* * *
15220729 AAAACAAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
15220794 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
** * * * * *
15220859 GATCCATTGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCGCCCTTCCACCCACCCGCTC
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-GCT-GCCCGTCCGCCCGCCCGCTC
** * ** * *
15220924 GTTTCGTCGGTTGGCTTAGGCATATGGACTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
194 GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGT
* * * * * * *
15220989 TGCAGCCGCAGGATCAACAGCACGCAGAGCGGGACCCGGTCGATCCCCGACTTGCACATCCTGCC
259 TGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC
* * *
15221054 CCTCTGGCCGGCTGAGCGCCCGCAT-GCTCATTTCGTGGGTTGACATAGGCATACGAAGTTCATT
324 CCTCTGGCCGGCTGAGCGCCCGC-TCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
** * * * *
15221118 CCCAGTCTAATTATACAGAATTCATT-CCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGC
388 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * *
15221182 AGATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACAATCATCGGAGCA
453 ACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * * *
15221247 TCATCGGAGAACCGGGCCAGCAGCATTAGGG-TTC--C-A---GTGATC---GGGGGTGTGCGCA
518 TCATCGGAGAACCTGACCAGCAGCATTGGGGTTTCGGCGATGGGGGGTCGGGGGGGGTGTGCGCA
* *
15221302 CATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
583 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
15221367 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAAT
648 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
15221432 GCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGA
713 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGA
* *
15221497 ATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
778 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
15221562 AT-TGAAAAATTTTCAAAAATTCTGAACTGTAAAAAGTTTTGAAAATTGTGAAAAATAA
843 -TCCGAAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG
* * *
15221620 AAAACGAGTCGTCTTGCCATGAAACTTCATGTTAAGGCTTAAGGGCCCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
15221685 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAAC
66 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
15221750 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACTTA-G-TGCCCGTCCGCCCGCCCGCTCGT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGGCTGCCCGTCCGCCCGCCCGCTCGT
* * * * **
15221813 TTGGTCGGTTGGCTTAGGCATACAAAGTTTATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTG
196 TTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG
* * * *
15221878 CAGCAGCAGGATCGACAGCACACAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCACCCA
261 CAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCC
* *
15221943 TCTGGCCGGCTGGGCACCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
326 TCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
15222008 AGTCTAAGCATACGGAGTTCTTTCCCAGTCTATGATCGGACCAGACCGAGGGTTGTGGCAGCACA
391 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
* * *
15222073 TGCTAGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCA
456 TGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * **
15222138 TCGGAGAATCTGACCGGTGGCATTGGGGTTTCGGCGATCGGGGGGTCGGGGGGGGTGTGCAG-AC
521 TCGGAGAACCTGACCAGCAGCATTGGGGTTTCGGCGAT-GGGGGGTCGGGGGGGGTGTGC-GCAC
*
15222202 ATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
584 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
15222267 GAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTA
649 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
15222332 TCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAT
714 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAA
* * * ** *
15222397 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATATACCGAGTTTGGGGCTGAAACACCTT
779 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-T
* * *
15222462 TCAGAAAAATTTTAAAATATCCCGAACCGCAAAAAGTTTTTAAAATCGTGAAAAATAG
843 TCCGAAAAATTTTAAAA-ATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG
* * * *
15222520 AAAATGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
** * *
15222585 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGAGGTGCCTAAACCAACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
15222650 GATCCACGGCTCGCGCATTCCGTCTCTC
131 GATCCACGGCTTGCGCATCCCGTCTCTC
15222678 CGCCCGCCCG
Statistics
Matches: 2487, Mismatches: 316, Indels: 123
0.85 0.11 0.04
Matches are distributed among these distances:
886 1 0.00
887 203 0.08
888 117 0.05
889 4 0.00
890 169 0.07
891 239 0.10
892 52 0.02
893 2 0.00
894 3 0.00
896 4 0.00
897 1 0.00
898 1 0.00
899 257 0.10
900 191 0.08
901 32 0.01
902 5 0.00
903 214 0.09
904 52 0.02
905 182 0.07
906 1 0.00
908 1 0.00
909 2 0.00
910 1 0.00
911 272 0.11
912 79 0.03
913 198 0.08
914 3 0.00
915 1 0.00
917 2 0.00
919 12 0.00
920 1 0.00
922 31 0.01
923 20 0.01
924 6 0.00
925 128 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGGCTGCCCGTCCGCCCGCCCGCTCGT
TTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG
CAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
TGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
TCGGAGAACCTGACCAGCAGCATTGGGGTTTCGGCGATGGGGGGTCGGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATT
TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAATTTTAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG
Found at i:15223346 original size:694 final size:695
Alignment explanation
Indices: 15222015--15223368 Score: 2101
Period size: 694 Copynumber: 1.9 Consensus size: 695
15222005 CCCAGTCTAA
* * * * *
15222015 GCATACGGAGTTCTTTCCCAGTCTATGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTATGGCAGCACATGCTAGG
*
15222080 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGACACCATCGTCGGAGCATCATCGGAGA
* * * * * * * *
15222145 ATCTGACCGGTGGCATTGGGGTTTCGGCGATCGGGGGGTCGGGGGGGGTGTGCAGACATGATGTG
131 ACCTGACCGGTGGCATTAGGGTTCCGACAATCGGGGGGCCGGGGGGCGTGTGCAGACATGATGAG
*
15222210 CGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15222275 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
*
15222340 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
326 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGATTTTTTTTG
* **
15222405 TGCATGCCAACAAAAATACAAGGATCACATATACCGAGTTTGGGGCTGAAACACCTTTCAGAAAA
391 TGCATGCCAACAAAAATACAAGGATCACATATACCAAGTTTGGGGCCAAAACACCTTTCAGAAAA
* * ** * *
15222470 ATTTTAAAATATCCCGAACCGCAAAAAGTTTTTAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
456 AATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTT
* * *
15222535 GCCATAAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATAAAACTTAACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15222600 TTGGCACACAGAAATATGAAGAGGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTCGCG
586 TTGGCACACAGAAATATGAAGAGGTGCCTAAACCAACCTACCACCATATCGATCCACGGCTCGCG
*
15222665 CATTCCGTCTCTCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAT
651 CATCCCGTCTCTCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAT
* * *
15222710 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGAGTTATGGCGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTATGGCAGCACATGCTAGG
** * *
15222775 CTCGGGCATGTGCTGGTG-CTGTATTTTTCTTCATTGGGACACCATCGTCGGAGCATC-GCTGGA
66 CTCGGGCATGTGCTGGTGTC-ACATTTTTCTTCATCGGGACACCATCGTCGGAGCATCATC-GGA
15222838 GAACCTGACCGGTGGCATTAGGGTTCCGACAATCAGGGGGGCCGGGGGGCGTGTGC-GCACATGA
129 GAACCTGACCGGTGGCATTAGGGTTCCGACAATC-GGGGGGCCGGGGGGCGTGTGCAG-ACATGA
15222902 TGAGCGATGGGTGC-GAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
192 TGAGCGATGGGTGCTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
15222966 CTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-CCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCT
*
15223030 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGA-TTT
321 GAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGATTTT
* * * *
15223094 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCC
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACATATACCAAGTTTGGGGCCAAAACACCTTTCA
* *
15223158 GAAAGAAATTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAAT
451 GAAA-AAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAAT
* * *
15223223 CGTCTTGCCATGAAACTTAACGTGAAGGCCTAAGGGACCATTGTATGAATTTGCAAGCCATAAAA
515 CGTCTTGCCATAAAACTTAACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * *
15223288 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCATGG
580 ATGGCATTGGCACACAGAAATATGAAGAGGTGCCTAAACCAACCTACCACCATATCGATCCACGG
*
15223353 CTTGCGCATCCCGTCT
645 CTCGCGCATCCCGTCT
15223369 TTCTGGCCGG
Statistics
Matches: 597, Mismatches: 56, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
693 7 0.01
694 243 0.41
695 214 0.36
696 133 0.22
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (695 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTATGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGACACCATCGTCGGAGCATCATCGGAGA
ACCTGACCGGTGGCATTAGGGTTCCGACAATCGGGGGGCCGGGGGGCGTGTGCAGACATGATGAG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGATTTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACATATACCAAGTTTGGGGCCAAAACACCTTTCAGAAAA
AATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTT
GCCATAAAACTTAACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGAGGTGCCTAAACCAACCTACCACCATATCGATCCACGGCTCGCG
CATCCCGTCTCTCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAT
Found at i:15225015 original size:864 final size:870
Alignment explanation
Indices: 15222686--15225207 Score: 3247
Period size: 880 Copynumber: 2.9 Consensus size: 870
15222676 TCCGCCCGCC
** * * * * *
15222686 CGCTCGTTTCGTCAGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGACTAGACCG
* ** ** *** *
15222751 AGAGTTATGGCGGCACATGCTG-GGCTCGGGCATGTGCTGGTGCTGTATTTTTCT-TCATTG-GG
66 AGGGTTGCGGAAGCACATGC-GAGGCTCGGGCATGTGCTGGTGCCACATTTTT-TGTCATCGTGG
* ** * * *
15222813 ACACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGTGGCATTAGGGTTCCG-ACAATCAGGGG
129 -CACCATCGTCGGAGCA-CAC-CAAGAACCTGACCAGTGG-ACTA-GGTT-CGAACGATC-GGGG
* * * *
15222877 GGCCGG--GGGGCGTGTGCGCACATGATGAGCGATGGGTGCGAGTACTTGGCCCTTATATTGGCC
187 GGGCGGCCGGGGGGTGCGCGCACATGATGTGCGATGGGTGCG-GTACTT-GCCCTTATATTGGCC
* *
15222940 CCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
250 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
15223005 TGCTGCCAGTA-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
315 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
15223069 TACACTTCGAGTTTTTAGATG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
380 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTAC
* * * *
15223133 CAAGTTTGGGGCCAAAACTCCTTCCGAAAGAAA-TTTAAAAAATCCTGAACTGCAAAAAGTTTCA
445 CAAGTTTGGGGCCAAAAATCCTTCC-AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-
* * * *
15223197 AAAATCATGAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTAACGTGAAGGCCTAAGGGACC
508 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15223262 ATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
573 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
* * *
15223327 CCACCTACCACCATATCGATCCATGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCTGCC
638 CCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* ** *
15223392 TACCCGTCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCTTAGTTTAAGAT
703 T--CCG-CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * * * ** * *
15223457 TGGATCGGACCGAGGGTTGCGGCAGTAGGCTCGGCAGCATGCAGAGGGGGACCCGGCCGATCCTC
765 CAGACCGGACCGAGAGTTGCAGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCC
* * * *
15223522 GGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAACGCCTGCA
830 GACTTACGCATCCCACCCCTCTGGCCGGCTGAACGCCTGCA
* * *
15223563 CGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGACTAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGACTAGACCG
*
15223628 AGGGTTGCGGAAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTTGTCATCGTGGCA
66 AGGGTTGCGGAAGCACATGCGAGGCTCGGGCATGTGCTGGTGCCACATTTTTTGTCATCGTGGCA
* *
15223693 CCATCGTCGGAGCATCGCCAGAGAACCTGACCAGTGGATTAGGGTTCGAACGATCGGGGGGGCCG
131 CCATCGTCGGAGCA-CACCA-AGAACCTGACCAGTGGACTA-GGTTCGAACGATCGGGGGGG-CG
*
15223758 GCGGGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCTA
192 GCCGGGGGGTGCGCGCACATGATGTGCGATGGGTGC-GGTACTTG-CCCTTATATTGGCCCCCTA
* *
15223823 TCCCTCATCAAACCTTAAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACTA-GTTTGCT
255 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCT
* *
15223887 GCTAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
319 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
15223952 CTTGGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACATCTACCAAG
384 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAG
* *
15224017 TTTGGGGCCAAAAATTCC-TCCGAAAAAATTTGAAAAAATCCCGAACCGCAAAAAGTTTCAAAAT
449 TTTGGGGCCAAAAA-TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA-
** *
15224081 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTG
512 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
15224146 TATGAATTTACAAGCCATAAAAATGGCTTTGGTACGTAGAAATATGAAGATGTGCCTAAACCCAC
577 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* * *
15224211 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCC
642 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-CC
* * * **
15224276 TGCCTGTCCGCTCATTTCGCCAGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGA
706 -GCC-GTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
15224341 CCAGACCGAGAGTTGCAGCAGCAAGATCGGCAGCACACAGAGGGGGACCTGACCGATCCCCGACT
769 CCGGACCGAGAGTTGCAGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACT
* *
15224406 TACGCATCTCACCCCTCTAGG-CGGCTGAGCGCCTGCA
834 TACGCATCCCACCCCTCT-GGCCGGCTGAACGCCTGCA
* * *
15224443 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGACTAGACCG
* * * * * *
15224508 AGGGTTGCGGCAGCACATGCGAGGCTTGGGCTTGTGCTGGTTTGTCGCATTTTTCT-TC--CCTG
66 AGGGTTGCGGAAGCACATGCGAGGCTCGGGCATGTGCTGG--TGCCACATTTTT-TGTCATCGT-
* * * * *
15224570 GGTACCAATCGTCGGAG-A-ACC-TGACCGCTG-GCA-TGG-CT-GGTTCG-GCGATC-GGGGGG
127 GGCACC-ATCGTCGGAGCACACCAAGAAC-CTGACCAGTGGACTAGGTTCGAACGATCGGGGGGG
* ** *
15224626 -GGCCGGGGGTTATTGCGCACATGA-GT-C-ATGGGTGC-GTCACTTGCCC-TATATTGGCACCC
190 CGGCCGGGGGGT-GCGCGCACATGATGTGCGATGGGTGCGGT-ACTTGCCCTTATATTGGCCCCC
* *
15224685 TATCCCTCATCAAACCTCAAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGC
253 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15224750 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTAC
318 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
15224815 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAAGATCATGTCTAACAG
383 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAA
* *
15224880 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGGTTCGAAAA
448 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAA
*
15224945 TCATGAAAACTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
512 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
15225010 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGGATATGTGCCTAAACCCAC
577 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
15225075 CTACCACCCTATCGA-CTCATGACTTGCGCATCCCGTTTCTCTCGCCGGCATAGTGCCCG-C-CC
642 CTACCACCCTATCGATC-CATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCC
* * *
15225137 GCCCGTTCGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
706 G-CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
15225202 CGGACC
770 CGGACC
15225208 ATGGGTTACG
Statistics
Matches: 1454, Mismatches: 159, Indels: 81
0.86 0.09 0.05
Matches are distributed among these distances:
860 59 0.04
861 4 0.00
863 6 0.00
864 414 0.28
865 9 0.01
866 5 0.00
867 8 0.01
868 1 0.00
869 11 0.01
870 10 0.01
871 6 0.00
872 5 0.00
873 6 0.00
875 9 0.01
876 21 0.01
877 145 0.10
878 124 0.09
879 87 0.06
880 490 0.34
881 11 0.01
882 22 0.02
883 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (870 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGACTAGACCG
AGGGTTGCGGAAGCACATGCGAGGCTCGGGCATGTGCTGGTGCCACATTTTTTGTCATCGTGGCA
CCATCGTCGGAGCACACCAAGAACCTGACCAGTGGACTAGGTTCGAACGATCGGGGGGGCGGCCG
GGGGGTGCGCGCACATGATGTGCGATGGGTGCGGTACTTGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGG
CCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCGCCGTCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAG
TTGCAGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCAC
CCCTCTGGCCGGCTGAACGCCTGCA
Found at i:15226975 original size:26 final size:26
Alignment explanation
Indices: 15226945--15226997 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226935 GTTGACTTAG
*
15226945 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
15226971 GCATATTGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15226997 G
1 G
15226998 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15228745 original size:26 final size:26
Alignment explanation
Indices: 15228716--15228768 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15228706 GTTGACTTAG
15228716 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15228742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15228768 G
1 G
15228769 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15229658 original size:26 final size:26
Alignment explanation
Indices: 15229622--15229671 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15229612 GACTTAGGCG
15229622 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
15229648 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15229672 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15231172 original size:898 final size:897
Alignment explanation
Indices: 15225168--15235084 Score: 12600
Period size: 898 Copynumber: 11.1 Consensus size: 897
15225158 GTTAGCTTAG
* * * *
15225168 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC-ATGGGTTACGACAGCGCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGCGGCAGCACATGCTGG
* ** * * * **
15225232 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCCCCGAGGCACCATCGCCAGACCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * ** * *
15225297 AACCTGACCGACGGCATTCGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTACGCACATGATGTGG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15225362 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15225427 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15225492 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15225557 GCATGCCAACAAAAATAAAAGGATCACGTCCACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * ** *
15225622 TTTTTAAAAATCCCAAACAGTGAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15225687 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAATAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15225752 TGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGTGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
15225817 ATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCT
* * * * * *
15225882 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGATTGAAGGTTGTGGTAGCAGGATT
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGCAGGA-T
* ** * * * * *
15225946 GGCAGCACGCAGAGGGGGACTCGGTCGATCCCCGTCTTGCACATCCCGCCCCTTTGGCCGGCTGA
774 CGCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * * * * **
15226011 GCGCCTGCACACTCATTTTGTGGGTTGACCTAGGCAAACAAAGTTCATTCCCAGTCTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * * *
15226070 GCATACGAAGTTCATTCCTAGTCAAAGATCAAATCGGACCGACGGTTACGACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** * *
15226135 TTCGGGCATTTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15226200 ACCTGACCGACGGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGGTGT--ACTCATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15226263 GATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15226328 CCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTACTGCCAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15226393 GGGACACTTTTTCCAAATGGACACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * *
15226458 GCATGCCAATAAAAATATGAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
15226523 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCAAGAAAAATAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15226588 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15226653 TGGCATGCCGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15226718 ATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTTGTGGGTTAGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * ** *
15226783 TAGGCATACGGAGTTCATTCCCAATCTAAGATTAGAACGGACCGAGGGTTGCGGTTGCAAGATCA
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATC-
* * * * * * **
15226848 GCAGCACGTAGAAGGGGACCCGATCGATCCCTGGCATGTGCATCCCACCCCTCTGGCCGGCTGAG
775 GCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * *
15226913 CGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCGTTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
15226971 GCATATTGAGTTCATTCCCAGTGTAAGATCAGACTGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15227036 GTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCTCCATCGCCGGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAG
*
15227100 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCTCGGGGGGGAGGTGTGCGCACATGA
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC-C---GGGG-GGTGTGCGCACATGA
* *
15227165 TGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACATCGAGAA
190 TGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
15227229 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
15227294 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGCATTT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * ** *
15227359 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTCGGGAAAAAACGCCTTCCG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
15227424 AAAAAATTTTAAAAAATCCCTAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
449 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * **
15227489 ATCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGAATTTACAAGTGATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* **
15227554 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCATGTACCACCCTATCGATCCACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
15227619 TTGCACATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCACCCGCTCGCTCGTTTCATCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCGTCGG
* ** * * *
15227684 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGGGTTGCGACAGC
705 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGC
** * * * ** * *
15227748 AGGATCGACAGCACGCAGAGGGGGACCCTG-CTAATCCTCAACTTACGCATCCCGCCCCTCTGGC
769 AGGATCG-CAGCACATAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
* * *
15227812 CGGTTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC--AG---------AG--T-
832 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
15227863 -
897 A
* * ***
15227863 ---T-C--A-TTC--T--CAGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGCACATGCCACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15227917 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGT-TGGG-------G-C---GCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** * *
15227970 ACCTTACCGGCGGCATTGGGGTTCCGGTGAT-AGGGGGCCGGGGGGATGTGCGCACATGATGTGA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* * *
15228034 GATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTTATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15228099 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCGATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15228164 GGGACACCTTTTTCAAATGGTCACAAACTCTTGTACACTTCAAGTTTTTAGCTGAATATTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15228229 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
15228294 TTTTAAAAAATC-CTGAACCGCATAACGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
455 TTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15228358 GCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGGCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15228423 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-CTGATCCACGGGTTGC
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGGCTTGC
15228487 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** * *
15228552 CTGAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGAT
* * * *
15228617 CAGCAGCACATAGAGAGGGACCCGGTCGATCGCCAGCTTGCGCATCCTGCCCC-CATGCCCGGCT
774 C-GCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTC-TGGCCGGCT
* * * *
15228681 GAGCGCCCGTACACTCGTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15228742 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAAGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * **
15228807 CTCAGGCATGTGCAGGTACCGTATTTTTTTTCGCCGGGGCACCATCACCGAAGCATTATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15228872 ACCTGACCGGCGGCGTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
15228937 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCAATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15229002 ACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15229067 GGGGACACCTTTTTCAAATGGTCACAAACTCTTGTACAGTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15229132 TGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTAGGG-AAAAACTCCTTCCGAAACA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15229196 ATTTTAAAAAATC-CTGAACCGCATAATGTTTCGAAAATCATGCAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15229260 TGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15229325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGGTTGT
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
15229390 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACCGCCTGCCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGG
* ** * * * * *
15229455 CTTAGGCATACGGACTTCATTCCCAGTCTAAGATTGGATC-AGGCTGAGAGTTGTGACAGCAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGCAGGA
** * ** ** * *
15229519 TCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGC-TTGTCACCCCTCTGGCTGGC
773 TC-GCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGC
* * * * *
15229583 TAAGCGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15229645 GCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGAACCGAGGGTTGCAGTAACACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** **
15229710 CTCGGGCATGTGCTGGTGCCGCATTTCTCTTCCCCGGGGCACCATCGTTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** * * * *
15229775 ACATGATCGGTAGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGG-ATGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*** * * *
15229839 ATGGGTGCCAATACTTGGCCCCTATATTGGCCCCCTATCCATCATGAAACCTCGAGAACTCACA-
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15229903 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
15229968 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * * *
15230033 CAGGCCAACAAAATTATAAGGATCTCATTTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
15230098 TTTAAAAAATCCCGAACCACAAAATGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
15230163 CATGAAAGTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15230228 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGAACCACGGCTTGCTCA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * *** * * *
15230293 TCCCGTCTCTTTGTTCGACGTAGTGCCCGCCCGCCCGTTTGTTCGTTTCATCGGTTGGCTCAGGC
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
15230358 ATACGGAGTTCATTCCCAATCTAAGATC-GAACCGAACTGAGGGTTGTGGCAGCAGGATCAGCCA
716 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTGAGGGTTGCGGCAGCAGGATC-G-CA
* * *
15230422 -CACATAGAGGGGGACCCGGTCGATCCCCGGCATGCGCATCCTGCCCCTCTGACCGGTTGAGCGC
778 GCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * *
15230486 CCGCACGATCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAA
843 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15230541 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15230606 CTCGGCCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15230671 ACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGTCC-GGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
** *
15230735 GATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15230800 CCTCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * **
15230865 GGAACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGA-TTCTTTTGCTGAAAGTTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTTAGCTGAATTTTTTTG
* * **
15230929 TGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTAGTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
15230994 ATTTTAAAAAATCTCGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15231059 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * *
15231124 TTGGCACATAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * **
15231189 CATCTCGTCTCTCTGGCCGGCATTGTGCCCGCCCGCCCGTCCGCTCGTTTAATCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
15231254 GCATACAGAGTTCATTCCCAATCTAAGATCAGACC-AGACTGAGGGTTACGGTAGCAGGATCGAT
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGCAGGATCG-C
*** * * * * *
15231318 AGCATGCAGA-GGGGACTCGGTCGATCCCTGGCTTGTGCATCCAT-CCCCTTTGGCCGGTTGAGC
777 AGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC-TGCCCCTCTGGCCGGCTGAGC
* * * *
15231381 GCCCGTACGTTCGTTTTGTGGGTTGACTTAGGCATATC-GAGTTCATTCCTAGTCTAA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGGAGTTCATTCCCAGTCTAA
* * * *
15231438 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTCCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
15231503 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * ** * * *
15231568 ACCTGACTGACGGCATTGGGTTTTTGACGATCTGAGAGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-G-GGGGGCCGGGGGGTGTGCGCACATGATGTG
** * * * *
15231633 CGATGGGTGCTGGTACTTGGCCCTTATATTATCCCCCTATCCCTCATCAAACTTGGAAAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15231698 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15231763 GGGGACACTATTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
15231827 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
15231892 AATTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15231957 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15232022 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
15232087 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCTGCCCGCTCATTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGC
* * *
15232152 ATAGGCATACGGATTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATC
* * * * * *
15232217 GGCAGCACGTAGAGGGGGACCC-GACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGCCCAGTTG
775 -GCAGCACATAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
*
15232281 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
15232341 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
15232406 GTCGAGCATCTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCA---CC---G---C--CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** * *
15232460 ACCTGACCGGTGGAATTATGGTTTCGGCGATCGGGGGGCCGGGGGTGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC--GGG-GGGTGTGCGCACATGATGT
*
15232525 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15232590 CACCCGCTTAAGGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15232655 TTGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15232720 GTGCACGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAGCTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * ** * *
15232785 ACTTTTAAAAAATCACAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15232850 TGCCATGAAACCTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15232915 ATTGGCATGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATTCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15232980 ACATCCCGTCTCTCTGGCCAGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
15233041 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAGGATGGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGAT-CGC
** ** *** * * * * * *
15233106 AGCACGCA-AAAGGGACCCAACCGATCCTCAGCTTACGCGTCCCT-ACCCTCTGGCCGGCTCAGC
777 AGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCTGAGC
15233169 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15233226 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15233291 CTCGGGCATGTGCTAGTGCCGCA-TTTTCTTCGTTGGGGCACTATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** * * * *
15233355 ACTTGACCGGCGACATTGGGGTTCCGGTGATCAGGGAGCAGGTGGGGGTGTGCTCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC-CG-GGGGGTGTGCGCACATGATGTG
* * *
15233420 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15233485 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15233550 GGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCAAGTTTTTGGCTGAACTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15233615 TGCATACCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAGAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15233680 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
15233745 GCCACGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGCCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * * *
15233810 TTGGCACACAAAAATATGAAGATGTCCCTAAACCCTCCCATCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
15233875 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCG-T--TTTC-TCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
15233936 GCATACGGATTTCATTCCCAGTGTAATATCAGACC-AGACCGAGGGTTGCGGCAGCAAGATCGAC
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGCAGGATCG-C
* ** ** ** * * *
15234000 AGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCTGGCAGAGCG
777 AGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * *
15234065 CCCGCACGCTCGTTTCATGGGTTTG-CTTACGCATACGAAGTTCATTCCCAGTCTAA
842 CCCGCACGCTCGTTTCGTGGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
15234121 GCATACAGAGTTCGTTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGTAGATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * * *
15234186 CTCGGGGATGTGCTGGTGCCACATTTTTCTTCACCGAGTCTCCATCGCTGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15234251 ACCTGACCGGCGGCATTGGCGTTCCGACGATAGGGGGGCCGGGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTG
* * *
15234316 CAATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15234381 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15234446 GGGGACATTTTTTTCAAATGGTCACAAAATCCTTGTAACACTTTTGAG--TTTAGCTGAA-TGTT
324 GGGGACACTTTTTTCAAATGGTCACAAAAT-CTTGT-ACAC-TTCGAGTTTTTAGCTGAATTTTT
* * *
15234508 TT-TGCATGCCAAC-AAAATACAAGG-TCACGTCTACCAAGGTTGCGCGGGCAAACAATTCCTT-
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTT-TG-GGGCCAA-AACTCCTTC
* * *
15234569 CAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATG-AAAATAGAAAAACGT
447 CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGA
* *
15234633 GTCTTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAA
511 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
15234698 AAATGGCATTGGCATGCAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
576 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
15234763 GACTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGAT
641 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * ** * * *
15234828 TGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATC-GATCGAACCAATGGTTGTGGTAGCAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAG
* * * * * * **
15234892 GATCAGCAGCACACAAAGTGGGACCCGGTCGATCCCCGACTTGTGCATCCCGCCGTTC-GGCCGG
771 GATC-GCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * * * *
15234956 TTGAGTGCCCGCACGCTAGTTTCCTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAA
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
15235019 GCATACGGAGTTCATTCCCAGTCTTAGATCGGATTGGAGCGAGGGTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
15235084 C
66 C
15235085 ACGGAGTTCA
Statistics
Matches: 7834, Mismatches: 1019, Indels: 328
0.85 0.11 0.04
Matches are distributed among these distances:
863 5 0.00
864 619 0.08
865 3 0.00
866 3 0.00
867 3 0.00
868 11 0.00
869 38 0.00
870 1 0.00
872 1 0.00
873 1 0.00
875 2 0.00
877 1 0.00
880 3 0.00
881 67 0.01
882 1 0.00
883 2 0.00
884 18 0.00
885 171 0.02
886 95 0.01
887 4 0.00
888 2 0.00
889 1 0.00
890 78 0.01
891 4 0.00
892 32 0.00
893 202 0.03
894 813 0.10
895 224 0.03
896 777 0.10
897 347 0.04
898 872 0.11
899 424 0.05
900 350 0.04
901 769 0.10
902 271 0.03
903 741 0.09
904 252 0.03
905 21 0.00
906 3 0.00
907 602 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGCAGCA
CATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15232351 original size:26 final size:26
Alignment explanation
Indices: 15232315--15232367 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15232305 GTTGACTTTG
15232315 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15232341 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15232367 G
1 G
15232368 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15233237 original size:26 final size:26
Alignment explanation
Indices: 15233200--15233252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15233190 GTTGACTTAG
*
15233200 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15233226 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15233252 G
1 G
15233253 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15234125 original size:26 final size:26
Alignment explanation
Indices: 15234095--15234147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15234085 GTTTGCTTAC
15234095 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
*
15234121 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15234147 G
1 G
15234148 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15235022 original size:26 final size:26
Alignment explanation
Indices: 15234993--15235042 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15234983 GTTGACTTAG
*
15234993 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15235019 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
15235043 TAGATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15235274 original size:247 final size:245
Alignment explanation
Indices: 15234840--15235313 Score: 619
Period size: 247 Copynumber: 1.9 Consensus size: 245
15234830 GCTTAGGCAT
* * **
15234840 ACGGAGTTCAATCCCAGTCTAAGATCGATCGAACCAATGGTTGTGGTAGCAGGATCAGCAGCACA
1 ACGGAGTTCAATCCCAGTCTAAGATCGACCGAACCAAGGGTTACGGTAGCAGGATCAGCAGCACA
* ** * ** * *
15234905 CAAAGTGGGACCCGGTCGATCCCCGACTTGTGCATCCCGCCGTTCGGCCGGTTGAGTGCCCGCAC
66 CAAAGGGGGACCCGGTCGATCCCCGACTTACGCATCCCACCCCTCGGCCGGTGGAGTGCCCACAC
* *
15234970 GCTAGTTTCCTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATT
131 GCTAGTTTCCTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* ** *
15235035 CCCAGTCTTAGATCGGATTGGAGCGAGGGTTGTGGCAACACATGCTGGGC
196 CCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAACACATGCTGGGC
* * *
15235085 ACGGAGTTC-ATACCCAGTCTAAGATCGGACC-AGACCGAGGGTTACGGTAGCAGGATCGGTAGC
1 ACGGAGTTCAAT-CCCAGTCTAAGATC-GACCGA-ACCAAGGGTTACGGTAGCAGGATCAGCAGC
** ** * *
15235148 ACGTAAAGGGGGACCCGGTCGATCGTCGGCTTACGCATCCCACCCCTCTGGGCGGTGGAGTGCCC
63 ACACAAAGGGGGACCCGGTCGATCCCCGACTTACGCATCCCACCCCTC-GGCCGGTGGAGTGCCC
* * *
15235213 ACACGCTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
127 ACACGCTAGTTTCCTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
*
15235278 CATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTG
192 CATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG
15235314 CGACCGCACA
Statistics
Matches: 194, Mismatches: 31, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
244 2 0.01
245 24 0.12
246 64 0.33
247 104 0.54
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.23
Consensus pattern (245 bp):
ACGGAGTTCAATCCCAGTCTAAGATCGACCGAACCAAGGGTTACGGTAGCAGGATCAGCAGCACA
CAAAGGGGGACCCGGTCGATCCCCGACTTACGCATCCCACCCCTCGGCCGGTGGAGTGCCCACAC
GCTAGTTTCCTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAACACATGCTGGGC
Found at i:15235276 original size:26 final size:26
Alignment explanation
Indices: 15235240--15235292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15235230 GTTGACATAG
*
15235240 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15235266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15235292 G
1 G
15235293 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15237487 original size:897 final size:900
Alignment explanation
Indices: 15235085--15238623 Score: 4644
Period size: 897 Copynumber: 4.0 Consensus size: 900
15235075 CATGCTGGGC
* * * * *
15235085 ACGGAGTTCATACCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAACAGGATCGGCAGCAC
* * * * ** * *
15235150 GTAAAGGGGGACCCGGTCGATCGT-CGGCTTACGCATCCCACCCCTCTGGGCGG-TGGAGTGCCC
66 GCAAAGGGGGACCCGGCCGATC-TCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT-GAGCG-CC
* ** *
15235213 A-CACGCTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGT
128 AGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGT
* * * * *
15235277 TCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGACCGCACATGCTAGGCTCGAGCATGT
193 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGT
* * ** * * * *
15235342 GCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGGT
258 GCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGC
* * ** * * * * *
15235407 GACATTGGGGTTCCGGTGATTGGGGGGGCC-GGGGGGTATGCGCCCATGGTGTGCCATGGGTGCT
323 GGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
15235471 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
388 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAA
15235536 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
453 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
*
15235601 TTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGCTG-ATTGTTTTTATGCATGCCAA
518 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTTATGCATGCCAA
15235665 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
582 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** * *
15235730 ATCCCGAAACACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAAAAAGTCGTCTTGCCATTAAT
647 ATCCCGAAACGCAAAAAGTTTCAAAAATCGTGAAAAAT-AAAAAACGAGTCGTCTTGCCATGAAA
* *
15235795 CTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
711 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAC
* * *
15235860 AGAAATATGAAGATGTCCCTAAACCCACCTACCAACCTATCAATCCATGGCTTGCGCATCTCGTC
776 AGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTC
* * *
15235925 TCTCTAGCCGGCGTTGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
841 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * ** * *
15235985 ACGGAGTTCATTCCTAGTCTAAGATCGAAC-CGAATTGAGGGTTGTGAG-AACAGGATCGACAGC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACTAG-ACCGAGGGTTGCG-GTAACAGGATCGGCAGC
* * * * * * * * *
15236048 ATGTAGAGGGGGACCCGACTGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGACTGAGCGCCC
64 ACGCAAAGGGGGACCCGGCCGATCTCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCA
* * *
15236113 GCACGCTCGTTTCGTGGGTTGACTTTGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTT
129 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTT
*** * *
15236178 CATTGGTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCATATGCTAGGCTCGAGCATGTG
194 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGTG
** *
15236243 CTGGTGCCGCATTTTTCTTTGCCAGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCG
259 CTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCG
* ** * * *
15236308 GCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGTGCATATGATGTGCGATGGGTGCTA
324 GCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
15236373 GTTCTTGGCCCTTATATTGGCCCCCTATTCCTCACCAAACCTCGAGAACTCACACCCCCTTATAG
389 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAG
15236438 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
454 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* * * *
15236503 TTCAAATGGTCACAAAATCTCGTACACTTCCAGTTTTTAACTGAATTTTTTTATGCATGCCAACA
519 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACA
* * *
15236568 AAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAAT
584 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * ** *
15236633 CCTG-AGCTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
649 CCCGAAAC-GCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
* *
15236697 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
713 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAG
15236762 AAATATGAAGATGTGCCTAAACCCACCTACC-ACTCTATC-ATCCACGGCTTGCGCATCCCGTCT
778 AAATATGAAGATGTGCCTAAACCCACCTACCAAC-CTATCAATCCACGGCTTGCGCATCCCGTCT
*
15236825 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGACAT
842 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
15236884 ACGGAGTTCATTCCCAGTCT-AGATCGGACTAGACCGAGGGTTGCGGTAGCCGGATTGGCAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAACAGGATCGGCAGCAC
** * * * *
15236948 GCAGTGGGGGACCCGGCCGATCTCCGGCTTGTGCATCCTGCCCTTCTGGCTGGCTGAGCGCCAGC
66 GCAAAGGGGGACCCGGCCGATCTCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCAGC
* * * *
15237013 ACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCAGACGAAGTTCA
131 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * ** * *
15237078 TTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGATGCTGGGCTC-AGGCATGTGC
196 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGA-GCATGTGC
* * *
15237142 TGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGAAGCATCACCGGAGAACCTGACCGGTGG
260 TGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGG
* * * * *
15237207 CATTAAGGTTCCAACGATCGGGGGGGTC-GGGGGGTGTACGCACATGATGTGCGATGGGTGCCGG
325 CATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * * *
15237271 AACTTGGCCATTATATTGGCCCCTTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGA
390 TACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
15237336 GCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
455 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * * * *
15237401 TCAGATGCTCACAAAATCTTGTACACTTAGAGTTTTTGGCTGAATTGTTTTGTGCATGCCAACAA
520 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAA
* * * * *
15237466 AAATACAAGGATCACGTCTACCATGTTCGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATC
585 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** * * * * *
15237531 CC-AAACCGTAAAAAGTTTTGAAAATCATGAAATATAGAAAACGAGTCATCTTGCCATCAAACTT
650 CCGAAA-CGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
*
15237595 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAAAGA
714 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGA
* * ** *
15237660 AATATGAAAATGTGCCTAAACCCACCTACCACCCTATTGATCCTCGGCTTGCGCATCCCGTCTCT
779 AATATGAAGATGTGCCTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTCTCT
* **
15237725 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCAT
844 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
15237782 ACGGTGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAATAGGATCGGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAACAGGATCGGCAGCAC
* * ** * *
15237847 GCAAAAGGGGACCCGGCCGATC-CCTGACTTGTGCATCCTGCCCCTCTGGCCGGCCAAGTGCCCG
66 GCAAAGGGGGACCCGGCCGATCTCC-GACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCAG
* * *
15237911 TACGCTCGTTTCATGGGTTGACTTAGGCATACATAGTTCATTCCCAG--T---C-T---AAG---
130 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
* *
15237964 ------A-TC--AGATCGGACC--A---AGGGTTACGGTAGCACATGCTGGGCTCG-GACATGTG
195 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAG-CATGTG
* * * * * *
15238014 CTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCAACATCGAAGAACCTGACCGGCG
259 CTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCG
* ** * * *
15238079 GCA-TAGGGGTTCTGACGAAAGGGTGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTACT
324 GCATTA-GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
15238143 GGCACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAAGCTGGAGAACTCACACCTCCTTAAA
388 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAA
* *
15238208 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTAAAATGGGGAGACTTT
453 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* * * * *
15238273 TTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAA
518 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCC-AA
* * * *
15238338 AAAAAAAACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
582 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
15238403 ATCTCGAAGCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGTCATGAAAC
647 ATCCCGAAACGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
** *
15238468 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTGTGCA
712 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACA
* *
15238533 GAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCAACGGCTTGCGCATCCCGTCT
777 GAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTCT
* * *
15238598 CTCTTGCAGTCGTAGTGCCCGCCCGC
842 CTCTGGCCGGCGTAGTGCCCGCCCGC
15238624 TCATTCCGTC
Statistics
Matches: 2323, Mismatches: 292, Indels: 73
0.86 0.11 0.03
Matches are distributed among these distances:
872 3 0.00
873 104 0.04
874 203 0.09
875 255 0.11
876 3 0.00
878 10 0.00
880 2 0.00
881 1 0.00
890 3 0.00
894 1 0.00
897 417 0.18
898 375 0.16
899 230 0.10
900 411 0.18
901 302 0.13
902 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAACAGGATCGGCAGCAC
GCAAAGGGGGACCCGGCCGATCTCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCAGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCT
GGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGC
ATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAAACGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAA
TATGAAGATGTGCCTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
Found at i:15240125 original size:709 final size:715
Alignment explanation
Indices: 15238762--15240236 Score: 2179
Period size: 709 Copynumber: 2.1 Consensus size: 715
15238752 AAGCTTATGG
* * *
15238762 AGTTCATTCCCAATCTAAGGTCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGACA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGGCTCGGACA
* *
15238827 TGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCATCAGAGAACCTGTCC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCATCAGAGAACCTGACC
* *
15238892 GACGAGATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCGCATGATGTGTGAATGGTGC
131 GACGAGATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAATGGTGC
* * * *
15238957 TTGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAAGTCACGACCCCTTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACGACCCCTTAA
15239022 AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
261 AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
**
15239087 TTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTTATGCATGCCA
326 TTTTCGAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA-TTTTTTTTATGCATGCCA
* * *
15239152 AAAAAAATACAAGGATCACGTCTAACAAGTTTGGTGCCAAAATTCCTTTCGAAAAAATTTTAAAA
390 AAAAAAATACAAGGATCAAGTCTAACAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTAAAA
15239217 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTGATCTTGCCATGAAA
455 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTGATCTTGCCATGAAA
15239282 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAAGGCATTGGCATGC
520 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAAGGCATTGGCATGC
* * * * *
15239347 AAAAATATGATGATGTACTTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
585 AAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCACATCCCATC
*
15239412 TCTCTAGCCGGCGTAGTG-C-C-CG-C-C-CGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACG
650 TCTCTAGCCGGCGTAGTGCCGCTCGACGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACG
15239471 A
715 A
*
15239472 AGTTCATTCCCAGTCTAAGATCGGACTGGACAGAGGGTTACGGCAGCACATGCTGGGCTCAGG-C
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGGCTC-GGAC
* * * * * *
15239536 ATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAATCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCATCAGAGAACCTGAC
*
15239601 CGACG-GCATT-GGGTTCCGACGATCGGGGGGGCCAAGGGGGTGTGTGCACATGATGTGCG-ATG
130 CGACGAG-ATTGGGGTTCCGACGATC-GGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGAAT-
15239663 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCAC-ACCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACGA-CC
*
15239727 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
255 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
15239792 ACACTTTTTT-GAAATGGTCACAAATTTTTGTACACTTCAAGTTTTTAGCTGA-TTTTTTTGTGC
320 ACACTTTTTTCG-AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTATGC
* * * *
15239855 ATGCCAACAAAAATACAGGGTTCAAGTCTACCAAGTTTGG-GCCCAAAACTCCTTCCGAAAAAAT
384 ATGCCAAAAAAAATACAAGGATCAAGTCTAACAAGTTTGGTG-CCAAAACTCCTTCCGAAAAAAT
* * ** ** *
15239919 TTTAAAAAATCCTGAACTGCAAAACTTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG-TCTTG
448 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT-GATCTTG
* *
15239983 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
512 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAAGGCAT
* * * * **
15240048 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCAATCCATGGCTTGCAC
577 TGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCAC
* *
15240113 ATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGACGGCTCGCCCGCTCGTTTCGTCGGTTGGCT
642 ATCCCATCTCTCTAGCCGGCGTAGTG-CCGCTCGAC-GCTCGCCCGCTCATTTCGTCGGTTGGCT
*
15240178 TAGGCATACGG
705 TAGGCATACGA
* ** * * *
15240189 AGTTCATTCCCAGTCTGAGATTAGACCAGACTGAGGGTTGCGGCAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGGCAGCA
15240237 GGATCGACAG
Statistics
Matches: 685, Mismatches: 63, Indels: 27
0.88 0.08 0.03
Matches are distributed among these distances:
708 1 0.00
709 277 0.40
710 135 0.20
711 193 0.28
712 1 0.00
713 2 0.00
714 1 0.00
716 1 0.00
717 74 0.11
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (715 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGGCTCGGACA
TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCATCAGAGAACCTGACC
GACGAGATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAATGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACGACCCCTTAA
AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCGAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTATGCATGCCAA
AAAAAATACAAGGATCAAGTCTAACAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTGATCTTGCCATGAAAC
TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAAGGCATTGGCATGCA
AAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCACATCCCATCT
CTCTAGCCGGCGTAGTGCCGCTCGACGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
Found at i:15246925 original size:26 final size:26
Alignment explanation
Indices: 15246889--15246941 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15246879 GTTGACTTAG
15246889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15246915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15246941 G
1 G
15246942 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15247144 original size:12 final size:12
Alignment explanation
Indices: 15247127--15247158 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
15247117 GTGCTGGTAC
*
15247127 TTGGCCCTTATA
1 TTGGCCCCTATA
15247139 TTGGCCCCTATA
1 TTGGCCCCTATA
15247151 TTGGCCCC
1 TTGGCCCC
15247159 CAATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:15247827 original size:26 final size:26
Alignment explanation
Indices: 15247797--15247875 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15247787 GTTGACTTAG
*
15247797 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15247823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15247849 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15247875 G
1 G
15247876 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15248748 original size:26 final size:26
Alignment explanation
Indices: 15248718--15248770 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15248708 GTTGACTTTG
*
15248718 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15248744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15248770 G
1 G
15248771 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15249161 original size:885 final size:884
Alignment explanation
Indices: 15246821--15250932 Score: 5099
Period size: 921 Copynumber: 4.5 Consensus size: 884
15246811 GTCCGTGACA
* *** * * * * *
15246821 CCCGGCTTGCCCATCCTGTCCCTCTGGCTGGCTGAGTGCCCGCACGCTTGTATCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
15246886 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
* * *
15246951 GACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGCGCTGGTGCCGCATTTTTCTTTGTCG
131 GACCAAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
15247016 AGGCACCATCGCCAGAACATGATCGGAGAACCTGACCAACAGCATTGGGGTTCTGACGATCGAGG
195 GGGCACCAT--------C-TG-CCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCG-GG
* * *
15247081 GGGCCGGGGGGAGAGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
249 GGGCCGGGGGG-GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-G---
* **
15247146 CTATATTGGCCCCCAATCCCTCATCAAAAATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
309 -------GG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
15247211 TTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTC
366 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
15247276 ACAAAATCTTGTACACTATGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGG
431 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGG
* * * *
15247341 ATCATGCCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTT-AAAAATCCCAAACCGTA
496 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCA
* * *
15247405 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAAGC
561 AAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
15247470 TTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGTCACACAAAAATATGAAGAT
626 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGAT
* * * * * * *
15247535 GTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTTTGGACGGCGT
691 GTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGT
* * * * *
15247600 AGTGCCCGCCCGCCCGCTCGTTTCATTAGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAG
756 AATGCCCACCCGCCCGCTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG
* ** * * * * *
15247665 ATCAGATCAGACTGAGGGTTGTAGCAGCAGGATCGGCAGTACGTAGAGGGGCACCCGGCCGACC
821 ATCAGATCAGACCGAGGGTTACAGTAGCAGGATCGGCAGCACGCAGAGGGGCACCCGACCGATC
* ** * *
15247729 CCCGGCTTGCCCATCCTGCCCCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACT
1 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
*
15247794 TAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAG
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG--T---C-TA---AG
* * ** * **
15247859 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGATAGCACATGCTAGGCTCGAGCACA
122 ---A-T--C-G-----GATCGGACC--A---AGGGTTGCGGCAGCACATGCTGGGCTCG-GCATG
* *
15247924 TGCTGGTGCCACATTTTTGC-TCATCGGGGTATCATCGTCGATGCAT-CAACGGAGAACCTGACC
169 TGCTGGTGCCGCATTTTT-CTTCGTCGGGG---CA-C--C-AT-C-TGC--CGGAGAACCTGACC
* * * * *
15247987 AACGGCATTGGGGTT-TCGACGATCGGAGGGGCCAGGGGGGTGTGCGTACATGATGTATGATGGG
222 GACGGCATTGGGGTTCT-GGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* *
15248051 TGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
285 TGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
15248116 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACA
350 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * *
15248180 CCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAATTGTTTTGTGCGTGC
415 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGC
* *
15248245 CAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAA
480 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * ** * * *
15248310 AAAATCCCGAACTGCAAAAAGGATCCAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGA
545 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* *
15248375 AACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
610 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
15248440 GCAGAAATATGTAA-ATGTGCCTAAACCCACCTACCATC-CTATCGATCCACGGCTTGCACATCC
675 ACAAAAATATG-AAGATGTGCCTAAACCCACCTACCA-CACTATCGATCCACGGCTTGCACATCC
* * * * * *
15248503 CGTCTCTCTGGTCGGCGTAGTGCCCACCCACCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGA
738 CGTCTCTCTGGCCGACGTAATGCCCACCCGCCCGCTCGTTTCGTTAGTTGGCTTAGGCATACGGA
* * * * * * * * *
15248568 GCTCATTCCCAGTCTAAGATCGGACCA-AGCTGAGGGTTGCGGTAGCAAGATCGGCTGCACGCAG
803 GTTCATTCCAAGTCTAAGATCAGATCAGA-CCGAGGGTTACAGTAGCAGGATCGGCAGCACGCAG
*
15248632 AGAGGG-ACCCGATCGATC
867 AG-GGGCACCCGACCGATC
** *
15248650 CCCGGCTTGCGCATCCCACCCCTCTGGCCGATTGAGCGCCCGCATGCTCGTTTCATGGGTTGACT
1 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
15248715 TTGGCATACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
*
15248780 GACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGTCATGTGCTGGTGCCGCATTTTTCTTCGTCG
131 GACCAAGGGTTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * *
15248845 GGGCACCAT-TGCCGGAGAACCTAACCGATGGCATTGGGGTTCTAGCGATCGGGGCGGCCGGAGG
195 GGGCACCATCTGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGG-GGCCGG-GG
15248909 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG-CCTTATATTGGGCCCCTATCCCTC
258 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTC
* * *
15248973 ATCAAACCACGAGAACTCATACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
323 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
15249038 GCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
388 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
* *
15249103 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGG
453 TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
* * * * * * **
15249168 CCAAAAATCATTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCTAAAATTTTGAAA
518 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
15249233 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
583 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
15249298 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACA
648 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACA
15249363 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAATGCCAACCCACCCGCCCGCC
713 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAATG----CCCA----CCCGCC
* * ** *
15249428 CGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAATTTCGGATCAGACCG
770 CGCTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGACCG
* *
15249493 AGGGTTACAGTAGCAGGATCGGCAGCATGTAGAGGGGCACCC-AGCCGATC
835 AGGGTTACAGTAGCAGGATCGGCAGCACGCAGAGGGGCACCCGA-CCGATC
* * *
15249543 CCCGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGTACACTCGTTTCATGGGTTGACT
1 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
*
15249608 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CT
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-
* ** * * * *
15249672 GGACCGAGGGTTGTAGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCTGCATTTTTTTTTGTC
130 GGACCAAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTC
** * * *
15249737 GACGCACCATCTCGGAGCATCGCCGGAGAACTTGACTGACGGCATTGGGGTTCCGGCGATCAGGG
194 GGGGCACCA--T-----C-T-GCCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATC-GGG
* * *
15249802 GGGCCGGGGGGGTGTGTGCAAACGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCC
249 GGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCC
* * *
15249866 CAAATCCCTCATTAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
314 C-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
15249931 GCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
378 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
15249996 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
443 ACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACC
* * **
15250061 AAGTTTGGGGTCAAAACTCCTTGCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAA
508 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAA
* * *
15250126 AATTATGAAAAATATAAAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGCCTTAAGGGACC
573 AATCATG-AAAA-ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** *
15250191 ATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
636 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAAC
* * * *
15250256 CCACCTACCACACTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCC
701 CCACCTACCACACTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAATGCCCACC
* * * ** *
15250321 CGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAATTTCAGATCGG
766 CGCCCGCTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAG
** *
15250386 ACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGCACCCAACCGATC
831 ACCGAGGGTTACAGTAGCAGGATCGGCAGCACGCAGAGGGGCACCCGACCGATC
* ** * * * * *
15250440 CCCGGCTTGCGCATCCCACACCTCTGGCCGATTGAGCGACCACACACTCATTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * *
15250505 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATCCCCAGTCTAAGATCAGACCG
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
* * * *
15250570 GACCGAGGGTTACGGCAGCACATGCTTGGCTCAAGCATGTGCTGGTGCTC-CATTTTTCTTCGTC
131 GACCAAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGC-CGCATTTTTCTTCGTC
* * * *
15250634 GGGGCACCATCGCCGGAGCATCGTCGGAGAACTTGACCGACGACATTGGGGTT-TCGGTGATCAG
194 GGGGCACCAT--------C-T-GCCGGAGAACCTGACCGACGGCATTGGGGTTCT-GGCGATC-G
* * *
15250698 GGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAGTGGCC
247 GGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGGC
* *
15250763 CCCTATCCCTCATTAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
312 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
15250828 TGCTGCCTA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
377 TGCTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
15250892 GTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
441 GTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
15250933 CCTACTACAT
Statistics
Matches: 2843, Mismatches: 270, Indels: 192
0.86 0.08 0.06
Matches are distributed among these distances:
883 2 0.00
884 145 0.05
885 365 0.13
886 1 0.00
888 2 0.00
889 5 0.00
891 1 0.00
892 7 0.00
893 277 0.10
894 4 0.00
895 52 0.02
897 289 0.10
898 267 0.09
899 5 0.00
900 8 0.00
901 3 0.00
902 46 0.02
903 291 0.10
904 8 0.00
905 165 0.06
906 1 0.00
908 107 0.04
909 1 0.00
910 1 0.00
912 2 0.00
913 1 0.00
914 2 0.00
915 2 0.00
916 1 0.00
917 2 0.00
919 1 0.00
920 124 0.04
921 485 0.17
922 7 0.00
923 1 0.00
924 1 0.00
929 8 0.00
931 1 0.00
932 1 0.00
933 45 0.02
934 99 0.03
935 1 0.00
937 2 0.00
938 1 0.00
940 1 0.00
941 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
GACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCTGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGG
TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
TTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACACTA
TCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAATGCCCACCCGCCCGCTCGTTTCG
TTAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGACCGAGGGTTACAGT
AGCAGGATCGGCAGCACGCAGAGGGGCACCCGACCGATC
Found at i:15249641 original size:26 final size:26
Alignment explanation
Indices: 15249611--15249663 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15249601 GTTGACTTAG
15249611 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15249637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15249663 G
1 G
15249664 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15250544 original size:26 final size:26
Alignment explanation
Indices: 15250508--15250560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15250498 GTTGACTTAG
*
15250508 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15250534 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15250560 G
1 G
15250561 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15251275 original size:26 final size:26
Alignment explanation
Indices: 15251239--15251289 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15251229 TGACTTAGGG
*
15251239 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
15251265 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15251290 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:15252166 original size:26 final size:26
Alignment explanation
Indices: 15252130--15252182 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15252120 GTTGACTTAG
15252130 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
15252156 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
15252182 G
1 G
15252183 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:15253198 original size:888 final size:885
Alignment explanation
Indices: 15250952--15253696 Score: 3632
Period size: 888 Copynumber: 3.1 Consensus size: 885
15250942 TGAAGATGTG
* *
15250952 CAGAAATATGAAGATGTGCCTAAACCCACCTACTACACTATCGATCCACGGCTTGCGCATCCCGT
1 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
15251017 CTCTTTGGCCGGCGTAGAGCCCACCCGCCCGCCCGCACGCTTATTTCGTCGGTTGGCTTAGGCAT
66 CTCTCTGGCCGGCGTAGTG-CC-CCCGCCCG-CC-CA--CTAATTTCGTCGGTTGGCTTAGGCAT
* * * *
15251082 ACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATTGAGGGTTACGATAGCAGGATCGACCGTAC
125 ACGGAGTTCATTCCCAGTCTAAGATTAGATCAGATCGAGGGTTGCGGTAGC---A--G---GTA-
* * **
15251147 GTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCAT-CTCGCCCCTCTGGCTTGCTGAGCGCCCG
181 GT---GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCG
* * *
15251211 CACGCTCATTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
242 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
** * ** * * *
15251276 ATTCCCAGTCTAAGATTGGACCAGACCGAGCATTGCGACAGCACATGCTGAGCTCGAGCATGTGC
307 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-GAGCACATGCTGGGCTCGGGCATGTGC
** * *
15251341 TGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCTGGTGCATCACCGGAGAACCTGATCGACGG
371 TGGTGCCGCATTTTTCTTC-ACGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGACGG
* * *
15251406 CATTAGGGTTCC-AGCAATCGGGCGG-ATTGGGGGGG-TGTGCGCGCACATGATGTGCGATTGGT
435 CATTGGGGTTCCGA-CGATCGGG-GGTATTGGGGGGGCTGT--GCGCACATGATGTGCGATGGGT
* *
15251468 ACTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTT
496 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
15251533 AAAGAGCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCCATTAAAGTGTTTAAAATGGGGACAC
561 AAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTATGAAATGGGGACAC
* * * *
15251598 TTTTTTCAAAAGGTCACAAAAACTTGTACACTTCGATTTTTTAGCTCAATTTTTTTGTGCATGCC
626 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC
* *
15251663 AACAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
691 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
15251728 AAAT-CTCGAACTACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATTAGTTGTCTTGCCATGA
756 AAATCCT-GAACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGA
15251792 AACTTCACGTGAAGGCTTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCAC
820 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
15251856 A
885 A
*
15251857 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGT
1 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * *
15251922 TTCTCTGGTTGGCATAGTG--CCCGCCCG----CTCATTTCGTCGGTTGGCTTAGGCATACGGAG
66 CTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCACTAATTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
15251981 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATTGACAGCATGAAGAG
131 TTCATTCCCAGTCTAAGATTAGATCAGATCGAGGG-T-T----GC-GG--T---AGCAGGTAGTG
* * * * * * * * *
15252046 GGGGACCCGGCCGATCCCTGACTTGTGCATCCTGCTCCTCTGGCCGGTTGAGCACCCGCGCGCTG
184 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
15252111 GTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCA
249 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** * *
15252176 GTCTAAGATCAGACTGGACCGAGGGTTGCAGGAGCACATATTGGGTTCGGGCATGTGCTGGTCCC
314 GTCTAAGATCAGACCGGACCGAGGGTTGC-GGAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * **
15252241 GCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGG
378 GCATTTTTCTTCAC-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGG
* *
15252306 GTTCCGACGGTCGGGGGTTTTGGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
442 GTTCCGACGATCGGGGGTATTGGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** *
15252371 GCCCTTATATTGGCCCCGTATCCCTCATCAAAATTTGAGAACTCACA-CCCCTTAAAGAGCATTT
507 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
15252435 GAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTCTCTGAAAT-GGGATACTTTTTTCAAAT
572 GAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAAT
* * *
15252499 GGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAGCAAAAATAC
637 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATAC
* *
15252564 AAGGATCACATCTACCAAGTTTGGGGCCAGAACTCCTTCCGAAAAAAGTTTAAAAAATCCTGAAC
702 AAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
* * * * *
15252629 TACAAAAAATTTTTGAAAATTATGAAAAATAGAAAATGGGTCGTCTTGCCATGAAACATCACGTG
767 TAC-AAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTG
**
15252694 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCACA
831 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * * *
15252749 CAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCTCGT
1 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
15252814 CTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCACTAATTTCGTCGGTTGGCTTAGGCATACGG
66 CTCTCTGGCCGGCGTAGTGCCC-CC-GCCCGCCCACTAATTTCGTCGGTTGGCTTAGGCATACGG
* *
15252879 AGTTTATTCCCAGTCTAAGATTAGATCAGATCGAGGGTTGCGGTAGCAGGTAGTGGGGGACCTGG
129 AGTTCATTCCCAGTCTAAGATTAGATCAGATCGAGGGTTGCGGTAGCAGGTAGTGGGGGACCCGG
*
15252944 TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGG
194 TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * *
15253009 TTGACTTTGGCATACGAAATTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTTTAAGATC
259 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * *
15253074 AGACCGGATTGAGGGTTTCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
324 AGACCGGACCGAGGGTTGCGG-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
15253139 TCAACGGGGTACCATCGCCAGAGCATCACCGGAGAACCTGATCGACGACATTGGGGTTCCGACGA
388 TC-ACGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGA
*** * * *
15253204 TCGGGGGTGGCGGGGGGTGC-ATGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATA
452 TCGGGGGTATTGGGGGG-GCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
15253268 TTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTTAAGAGCATTTGAGATTTTA
516 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
15253333 CAGGTATT-CTGCCAGTAGCCATTAAGGTGTATGAAATGGGGACACTTTTTTCGAATGGCCACAA
581 CAGGT-TTGCTGTCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
15253397 AATCTTGTACACTTTGAGTTCTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
645 AATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
15253462 CGTCTACCAAGTTTGGAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCACAAAAA
710 CATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACTACAAAAA
* ***
15253527 GTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACAAAAAGGCTTAA
775 GTTTTGAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
15253592 GGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGAACA
840 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
15253638 TAGAACTATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
1 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
15253697 GGATCGACAG
Statistics
Matches: 1605, Mismatches: 200, Indels: 86
0.85 0.11 0.05
Matches are distributed among these distances:
887 2 0.00
888 325 0.20
889 214 0.13
890 276 0.17
891 136 0.08
892 181 0.11
893 296 0.18
894 11 0.01
895 3 0.00
896 6 0.00
897 2 0.00
898 1 0.00
899 2 0.00
900 62 0.04
901 8 0.00
902 2 0.00
905 78 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCACTAATTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATTAGATCAGATCGAGGGTTGCGGTAGCAGGTAGTGGGGGACCCGGTC
GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGGAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
CGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGG
GGGTATTGGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGTCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACTACAAAAAGTTTTG
AAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
Found at i:15256992 original size:26 final size:26
Alignment explanation
Indices: 15256962--15257014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15256952 GATAACTTAG
15256962 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
15256988 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15257014 G
1 G
15257015 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15259095 original size:892 final size:879
Alignment explanation
Indices: 15256856--15259332 Score: 3081
Period size: 892 Copynumber: 2.8 Consensus size: 879
15256846 CACGACTTGC
* * * * *
15256856 GCAGGATCGGCAGCATGCAGAGGGGGACCCG-ATCGATCCTCGGCTTGCGCATCCTACCCCTCTG
1 GCAGGATCGGCA-CA-GTAGAGGGGGACCCGAATCGATCCCCGGCTTGCACATCCCAACCCTCTG
* * * * * *
15256920 ACC-GACTGAG-AGCCCGTACGCTTGTTTCATGGGATAACTTAGGCATACGGAGTTCATTCCCAA
64 GCCTG-CTGAGCA-CCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAG
* ** * *
15256983 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTAGACCGAGGGTTACGACAGCACAT-
127 TCTAAGCATCTGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCG-CAGCACATG
* * *
15257047 TCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGG-----GCA-C----CATCGCC
191 T-TAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCACCATCACCGGAGCATCGCC
* * * * *
15257102 GGATAACTTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGTGCTGGGGGGGTGTGCGCACATG
255 GGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGGC-CGGGGGGTGTGCGCACATG
* * *
15257167 ATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAA
319 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
* * * * *
15257232 CTCACACCCCCTTAAAGAGCTTTTGAGATTCTACAAGTTTGCTACCATTAGCCATTAAAGTGTCT
384 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCT
* *
15257297 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTT
449 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
* * * *
15257362 TTTTATGCATGCCAAAAAAAATACAAGGATCATATGTACCAAGTTTGGGGCCAAAACTCCTTCTG
514 TTTTGTGCATGCC-AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** *
15257427 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
578 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
15257492 GTCTTGCCATGAAATTCACGTGAAGGCATAAGTGACCATTGTATGAATTTACAAGCCATAAAAAT
643 GTCTTGCCATGAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15257557 GGTATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCATATTGATCCACGGTT
708 GGCACTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACAACCATATCGATCCACGGCT
*
15257622 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCTCGCCCGCTCACTCGCCCGCTTGTGTCGTCGGT
773 TGCGCATCCCGTCTCTCTGGTCGACGTAG-GCTCG-CCGCTCA--C-CCCGCTCGTGTCGTCGGT
*
15257687 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGTA
833 TGGCTTAGGCATACGGAGTTCATTCCCAGTCGAAGATTGGATTGGTA
* * ** *
15257734 GC---AT-------GTAAAGGGGGACCC-AATCGATCCCCGGCTTGCACATTCCGTCCCTCTGGT
1 GCAGGATCGGCACAGTAGAGGGGGACCCGAATCGATCCCCGGCTTGCACATCCCAACCCTCTGGC
* * * * *
15257788 ATGCTGAGCTCCCGCACGCTCGTTTCGTGGTTTTACTTAGGCATACGGAGTTCATTCCCAGTGT-
66 CTGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
15257852 AGTCATAC-GGAGTTCATTCCCAATCTAAGATCAGATCGGATTGAGGGTTGCGGCAGCACATGCT
131 AG-CAT-CTGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGC-GCAGCACATGTT
* * ** * * * * *
15257916 AGGCCCAGGCATGTGCTGGTGCCACATTTTTTTTCCTTGGGGCACCATCCCCGGAGCATCGACGG
193 AGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT-CGTCGGGCACCATCACCGGAGCATCGCCGG
*
15257981 AGAACCTGACCGGCGGCATTGGGGTT-TCGACGATTTGGGGGGCCGGGGGGTGTGCGCACATGAT
257 AGAACCTGACCGGCGGCATTGGGGTTCT-GACGATTGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
15258045 GTGTGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACT
321 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
15258110 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
386 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGA
*
15258175 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
451 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
* * * * *
15258240 TTGTGCAAGCCAAAAAAAGCACAAGGATCACCTCTACCAAGTTTGGGACCAAAACTCCTTCCAAA
516 TTGTGCATGCCAAAAAAA-TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
15258305 AAAAGTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
580 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
15258370 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
645 CTTGCCATGAAA-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15258435 GCACTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACAACCCTATCGATCCACGGCTT
709 GCACTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACAACCATATCGATCCACGGCTT
*
15258500 GCGCATCCCGTCTCTCTGG-CTGACGTA-G-T-G-C-C-CA-CCCGCTCGTTTCGTCGGTTGGCT
774 GCGCATCCCGTCTCTCTGGTC-GACGTAGGCTCGCCGCTCACCCCGCTCGTGTCGTCGGTTGGCT
* *
15258557 TAGGCATACGGAGTTTATTCCCAATCTAAGATCGGACCAGATTGAGGGTTGTGGTA
838 TAGGCATACGGAGTTCATT-CC---C--AG-TC-GA--AGATT---GGAT-TGGTA
* * *
15258613 GCAGGATCGGCAACACGTAGAGGGGGACCCGGAATCGATCCCCCGCTTGCTCATCCCAACCTTCT
1 GCAGGATCGGC-ACA-GTAGAGGGGGACCC-GAATCGATCCCCGGCTTGCACATCCCAACCCTCT
* * *
15258678 GGCCTGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGT
63 GGCCTGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGT
* * *
15258743 CTAAGCATCTGGAGTTCATTCCCAGTCTAAGAT-GGACCGGATCGAGGGTTGCTGTAGCACATGT
128 CTAAGCATCTGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGC-GCAGCACATGT
15258807 TAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGCCG
192 TAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGCACCATCACCGGAGCATCGCCG
* * * * *
15258872 GAGAACCTGACCGACGACATTAGGGTTCTGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGA
256 GAGAACCTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGGCCG-GGGGGTGTGCGCACATGA
* * *
15258937 TGTGCGATGGCTACTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
320 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
* ** * * * *
15259002 CCACA-CCCCTTTGACAGCATTTAAGATTTTACAGGTTTGCTACTAGTAGCTATTAAAGTGTCTA
385 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTG
* * * *
15259066 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCAAATTTTTAGCAGAATTGT
450 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
* * * *
15259131 TTTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATCTCCTTTCGA
515 TTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
15259196 AAAAATTTTAAAAAAT-CTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGCC
579 AAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
15259260 GTCTTGCCATGAAAATTC-CGTGAAGGCTTTAAGGGACCATTTGGTATGTAATTTACAATCCGTA
643 GTCTTGCCATG-AAATTCACGTGAAGGC-TTAAGGGACCA-TT-GTATG-AATTTACAAGCCATA
15259324 AAAATGGCA
703 AAAATGGCA
15259333 TCCCGTTCTT
Statistics
Matches: 1376, Mismatches: 161, Indels: 107
0.84 0.10 0.07
Matches are distributed among these distances:
865 41 0.03
866 168 0.12
867 7 0.01
869 3 0.00
870 1 0.00
871 3 0.00
872 3 0.00
873 3 0.00
874 1 0.00
875 15 0.01
876 322 0.23
877 176 0.13
878 5 0.00
879 7 0.01
882 2 0.00
891 26 0.02
892 361 0.26
893 203 0.15
894 7 0.01
895 22 0.02
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (879 bp):
GCAGGATCGGCACAGTAGAGGGGGACCCGAATCGATCCCCGGCTTGCACATCCCAACCCTCTGGC
CTGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATCTGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGCAGCACATGTTAGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCACCATCACCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGG
CACGCAGAAATATGAAAATGTGCCTAAACCCACCTACAACCATATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGTCGACGTAGGCTCGCCGCTCACCCCGCTCGTGTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCGAAGATTGGATTGGTA
Found at i:15262006 original size:26 final size:26
Alignment explanation
Indices: 15261976--15262028 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15261966 GTTGACTTAG
15261976 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
15262002 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15262028 G
1 G
15262029 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15262891 original size:26 final size:26
Alignment explanation
Indices: 15262855--15262929 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
15262845 CTTGACTTAG
*
15262855 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15262881 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15262907 GCATACGGAGTTCATTCTCAGTC
1 GCATACGAAGTTCATTCCCAGTC
15262930 CACCAAGTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15263426 original size:26 final size:26
Alignment explanation
Indices: 15263390--15263442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15263380 GTTGACTTAG
*
15263390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
15263416 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15263442 G
1 G
15263443 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15264311 original size:26 final size:26
Alignment explanation
Indices: 15264282--15264334 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15264272 GTTAACTTAG
15264282 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15264308 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15264334 G
1 G
15264335 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15265215 original size:26 final size:26
Alignment explanation
Indices: 15265179--15265229 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15265169 TGACTTAGGC
* *
15265179 ATACGGAGTTCATTCCCAGTTTAAGT
1 ATACGGAGTTCATTACCAGTCTAAGT
15265205 ATACGGAGTTCATTACCAGTCTAAG
1 ATACGGAGTTCATTACCAGTCTAAG
15265230 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTACCAGTCTAAGT
Found at i:15266194 original size:898 final size:893
Alignment explanation
Indices: 15262931--15268499 Score: 7290
Period size: 898 Copynumber: 6.2 Consensus size: 893
15262921 TTCTCAGTCC
* * * *
15262931 ACCAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTC
1 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAGTTTC
* * * *
15262995 CAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGAC
65 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
15263060 CATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAAAAATATGAAGATGTGCCTAAA
130 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
15263125 CCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGGCGTAGTACCCAC
195 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT------
* * *
15263190 CCGCCCGCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTAT
254 --GCCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** ** * * ** * * * *
15263255 AAGATTGGATTGGATGGAAGGTTACGACAGCAAGATCGACAGCACGCAAAGGGGGACCCGGTCGA
313 AAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGA
* * * *
15263320 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGTGCCCGCAC-CTTCATTTTGTGGGTTG
378 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTG
*
15263384 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCAAGTCTAAGATCGGA
442 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGA
** * * * * *
15263449 CTGGACCAAGGGTTGCGGCAGCACATGCTTGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCG
506 CCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * *
15263514 TCGGGGCGCCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCTGACGATCG
571 TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * *
15263579 AGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGTTACTTGGCCCTTATATTGGCC
636 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
15263644 CTCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTT
701 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
15263709 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG
766 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
15263774 TACACTTCGAGTTTTTAGCTGAAT-TTTTGTGTGCATGCCAACAAAAATACAAGGATCATGTCT
831 TACACTTCGAGTTTTTAGCTGAATGTTTT-TGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
15263837 ACCAAGTTTGGGGCTAAAACTCCATTCGAAAAAATTATAAAAAATCCCAAACCGTAAAAAAGTTT
1 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT--AAAAGTTT
** * * *
15263902 TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
64 CAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
15263967 CCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCAAGCAGAAATATGAAGATATGCCTAA
129 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
15264032 ACCCACCAACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT----G
194 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * *
15264093 CCCGCCTGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACC
259 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * ** * * * * * *
15264158 AGACCGAGGGTTGTGGAAACAAGATCGGTAGCACGTAGAGGGGAACCCGACCGATGCCCAGCTTA
324 GGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* * * ** * *
15264223 CGCATCCCGCCCCTCTGGCCGGTTGAGCGTCCGTACGCTAATTTTGTGGGTTAACTTAGGCATAC
389 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
15264288 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGG
454 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGG
* * * * ** *
15264353 TTGTGGTAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCATCAT
518 TTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT
* * * *
15264418 CGTCGAAGCATCGCTC-GAGAAGCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGCGCCGAG
583 CGTCGGAGCATCGC-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-G
*
15264482 GGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
646 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
15264547 CATCAAACCTTCAA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
711 CATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
15264611 TTGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
775 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
15264676 AGTTTTGAACTGAATGCTTTTGTGTATGCCAACAAAAATACAAGGATTACGTCT
840 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * * * **
15264730 ACCAAGTTTGCAGTCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCTGAACCCCAAAAAGTTTC
1 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA-CCGTAAAAGTTTC
* * * *
15264795 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCATGTGAAGGCTTAACGGAC
65 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
15264860 CATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCATGCAAAAATCTGAAGATGTGCCTAAA
130 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
15264924 CCCACCTACC-CCCATATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCTGCGTAGTGCCTG
195 CCCACCTACCACCC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
15264988 CCCACCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATC-GAAC
259 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* * * * * * * * *
15265052 TGG-TCTGAGGGTTGCGACAACAGGATCGACAGCACACAGAGGGGGACCTG-GCTAATCCCCGAC
323 CGGATC-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCCCGGC
* * * * *
15265115 TTGCGCATCCTGCCCCTGTAGCTGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCA
386 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
15265180 TACGGAGTTCATTCCCAGTTTAAGTATACGGAGTTCATTACCAGTCTAAGATCGGACCAGATCGA
451 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGA
* * * * ** *
15265245 GGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCAC
515 GGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
** * * * *
15265310 CATCACCGGAGCATCACCGGACAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCG
580 CATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-
* * *
15265375 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCTTATCC
644 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
15265440 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCA
709 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
15265505 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AATGGTCACAAAATCTTGTACACTTC
774 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
15265569 GAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCT
839 GAGTTTTTAGCTGAA-TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
15265624 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAGTTTCA
1 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGTTTCA
*
15265689 AAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
66 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * ** *
15265754 ATTTTATGAATTTACAAGCCATATAAATGGCATTGGCACACAGAAATATGAAGATGTTCCTAAAC
131 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
15265819 CCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCC
196 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* *
15265884 CGCCCGCCCATTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
261 CGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
15265949 CCGGATCGAGGGTTGTGCCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCT
322 CCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
* * *
15266014 TGCGCATCCCGCCCTTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
387 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *** * * *
15266079 ACGAAGTTCATTCCTAGTCTAAGCATACATTGTTCATTCCTAGTCGAAAATCAGACCAGACCGAG
452 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCAGACCGAG
** ** * * * *
15266144 GGTTAAGATAGGACATGCTAGCCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACC
516 GGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
** * * * * *
15266209 ATCGTCGGAGCATCGTAGGAGAACATGATCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCC-A
581 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
15266273 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
646 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
15266338 CATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACATGTTTGCTGCCAGT
711 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15266403 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
776 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
15266468 GTCTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
841 GTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * **
15266521 ACAAAGTTTGGGACCAAAACTTC-TTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
1 ACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACC-GTAAAAGTTT
** * * *
15266585 TGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTAACGTAAAGGCTTGAGGGA
64 CAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * *
15266650 CCGTTGTATGAATTTATAGGCCATAAAAATGGCATTAGCATGTAGAAATATGAAGATGTGCCTAA
129 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
15266715 ACCCACCTACCACCCTGTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTCG
194 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-
* * * *
15266780 CACGCCCGTCCGCTCGTTTCATCGGTTGGTTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
256 C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * *
15266845 GACCGAACCAAGAGTTGTGGTAGCAGGATCGACAGCACGTAAAGGGGGACCCGA-CTGATCCCTG
320 GACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCCCG
*
15266909 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGG
384 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
15266974 GATACAGAGTTCATTCCCTGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
449 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACC
** * * * *
15267039 GACAGTTGTGACAGCACATGCTAGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGC
513 GAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC
* * * * *
15267104 ACCATCGCCAGAGCATCGTCGGAGAACCTGACCTGCGGCATTGGGGTTCCCG-CGATCGGAGGGG
578 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT-CCGACGATCGGGGGGG
* * * *
15267168 CCGGGGGGTGTGCACACATGATGTGAGATGGGTGCTGGTACTTGGCCCCTATATTGGGCCCCTAT
642 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
15267233 CCCTCATCAAACCTC-AGAAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTCGCTT
707 CCCTCATCAAACCTCAAG-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
15267297 CTAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACAC
771 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
15267362 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAAATACAAGGATCATGTCC
836 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCT
* * * * **
15267421 ACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCCAAACCACAAAAAGTTTC
1 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAGTTTC
* *
15267486 AAAAATTGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
65 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * ** *
15267551 CATTGTATGAATTCAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
130 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * * *
15267616 CCCACCCACCACCCTATCGATCCACGGATTACGCATCCCATCTCTCTGGCTGGCGTAGTGCCTGC
195 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
15267681 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCTCAATCTAAGAT-AGGACC
260 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACC
* * * * *
15267745 -AAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATTCTCGGCTT
324 GGATC-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * * * *
15267809 GCGTATCCCACCCCTCTGGCCGACT-ATGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGGAC
388 GCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
15267873 ACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCGGATCAGACCGAG
452 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAG
* * * * *
15267938 GGTTACGGCAGCACATGCTAGGCTCAGGCATGTGCTGGGGCTAG-ATTTTTCATCATCGGGGCAC
516 GGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTCATCGGGGCAC
* * * *
15268002 CATCGT------A-----GGATAACCTGACCGACGGTATTGGGGTTCCGACGATCGGAGGGGCCG
580 CATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-
15268056 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
644 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
15268121 CTCATCAAACCTCAAGAACTCACACCGCCTTAAAGACCATTTGAGATTTTACAGGTTTGTTGCCA
709 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
** * *
15268186 GTAGCCATTAAAGTGTCTGAAACAGGGACACTTTTTTCAAATTGTCACAAAATTTTGTACACTTC
774 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
15268251 GAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCT
839 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
15268306 ACAAAGTTTGGGGCCAAAACTAC-TTCCAAAAATATTTAAAAAAAAAT-TCGAATCCGTAAAAAG
1 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA-ATTT--TAAAAAATCCCGAA-CCGT-AAAAG
* **
15268369 TTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCTTGTGAAGGCTTAAG
61 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * *
15268434 GGACCATTGTATGAGTCTACAAACCATAAAAATAGCATTGGCATGCAGAAATATGAAGATCTGCC
126 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
15268499 T
191 T
15268500 GGCTGCCAGC
Statistics
Matches: 4093, Mismatches: 511, Indels: 137
0.86 0.11 0.03
Matches are distributed among these distances:
884 10 0.00
885 82 0.02
886 208 0.05
887 134 0.03
890 3 0.00
891 76 0.02
892 423 0.10
893 376 0.09
894 213 0.05
895 485 0.12
896 450 0.11
897 119 0.03
898 815 0.20
899 213 0.05
900 244 0.06
901 3 0.00
902 9 0.00
906 9 0.00
907 37 0.01
908 184 0.04
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (893 bp):
ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTG
CGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGT
CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
Found at i:15267004 original size:26 final size:26
Alignment explanation
Indices: 15266975--15267025 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15266965 TGACTTAGGG
*
15266975 ATACAGAGTTCATTCCCTGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
15267001 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15267026 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:15269614 original size:26 final size:26
Alignment explanation
Indices: 15269585--15269637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15269575 GTTGACTTAG
*
15269585 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
15269611 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15269637 G
1 G
15269638 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15270051 original size:887 final size:884
Alignment explanation
Indices: 15268518--15273882 Score: 5860
Period size: 887 Copynumber: 6.1 Consensus size: 884
15268508 GCTCGTCCGT
* * * **
15268518 TCGTTTCGTCAGTTGGCTTAGGCATACGGAATTCATTCCTAGTCTAAGATCAGACCAGACCGAGG
1 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGG
* * * * **
15268583 GTTTCGGTAGTAGGATCGACAGCATGCAAAAGGGGACCCGGCCGATCCCCGGCTTATGCATCCCG
66 G-TT--GCAGCA-G--C-ACA-CA-G--AGA-GGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * * *
15268648 CCCCTCTGGCCGGCTGAGCTCCCGTACGCTCATTTCGTGGGTTGACTTAGGGATACAGAGTTCAT
119 CCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * * * *
15268713 TCCCTATCTAAGCATATGGAGTTCATTCCCAATGTAAGATCGGATCAGACCGACGATTGTGGCAG
184 TCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
** * * * *
15268778 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCACCGCCAGAGC
249 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGC
* * * * * * *
15268843 ATCGTCGGAGAACCTGACCTGCGGCATTAGGGTTCCGGTGATCGGGGGGGTCGGGGGGTGTGCTC
314 ATCGCCGGAGAACCTGACC-ACTGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGC
* *
15268908 AAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTC
378 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
15268973 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAG
443 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * * * *
15269038 TGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTGTTTGGCTA
508 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * **
15269103 AATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGTCCCAAAACTCC
573 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
15269168 ATT-TGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAA
638 -TTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
* ** * *
15269232 CGAGTCATCTTGCCATTAAACTTCATTTAAAGGCTTAAGGGACCGTTGTATGAATTTACAGGCCA
702 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCA
* ** * *
15269297 TAAAAATGACATTGGCACACAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTGTCGATC
767 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
15269362 CATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCGTCCGC
832 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCGCCCGTCC-C
* **
15269417 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGAGTGGACTAAGG
1 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGG
* * ** * *
15269482 GTTGCAGCAGCACACAGAGGGGGACTCGGTCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCG
66 GTTGCAGCAGCACACAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
** *
15269547 ACTGAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
131 ACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * * *
15269612 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCACATGCTGGGC
196 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * ** * *
15269677 TCGGGCATGTGCTGGCGCCATATTTTTCTACGCCGGGGCACCATCGTCAGAGCATCACCGGAGAA
261 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAA
* *
15269742 CCTGACCAACTGCATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
326 CCTGACC-ACTGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15269807 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACAC
390 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
15269872 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
455 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * *
15269937 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTGGCTGAATTCTTTTGTG
520 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
15270002 TACGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAACTCCTTCTGAAAAAAT
585 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* *
15270067 TTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTAATCTTGC
650 TTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
* * *
15270132 CATGAAACTTCACGT-AGAGGCTTAAGGGACCATTGTATGAATTTATAGGCGATAAAAATGACAT
715 CATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAT
** * *
15270196 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGC
779 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15270261 ATCTCGTCTCTCTGGCCGGTGTAGTGCCCCGCCTGCCCCTGTCCC
844 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCC-CC-G-CCC-GTCCC
* **
15270306 GTCGTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACTAA
1 -TCG-TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAA
* * * * *
15270371 GGGTTATAGTAGTAGGATCGGCAACACGAAGAGGAGGACCC-AGCTGATCCCCGGCTTGCACATC
64 GGG-T-T-GCAGCA-G--C-AC-ACA-G-AGA-G-GGACCCGA-CCGATCCCCGGCTTGCGCATC
* * * * *
15270435 CCGCCCTTCTGGCTGGCTGAGCACCTGCACGCTCATTTCGGGGGTTGACTTAGGCATACGGAGTT
116 CCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
15270500 CATTCCCAATTTAAGCATAC-GAGGTTTCTTTCCCCAG-CTAAGATCGGACCAAATCGAGGGTTG
181 CATTCCCAATCTAAGCATACGGA-G-TTCATT-CCCAGTCTAAGATCGGACCAAACCGAGGGTTG
* * * * * *
15270563 TTGGCAGCACATGCTGGGCTCGGGCATGTGCTGTTGCCACATTTTTCTGCGCCAGGCCACCATCA
243 -CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
* * * * *
15270628 TCGGAGCATCGTCGGAGAACCTGATCGACTGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGG
307 CCGGAGCATCGCCGGAGAACCTGA-CCACTGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGG
* * *
15270693 TCGGTGCG-ACTATTGATGTGGGGATGGGTGCCGGTACTTGGCTCTTATATTGG-CCCCTATCCC
371 T--GTGCGCAC-A-TGATGT-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
** *
15270756 TCATCAAACCTCGAGAACTCACACCGTCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAG
431 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
15270821 TAGCGATTAAAGTGTCTAAAACGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCG
496 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
15270886 AGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
561 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * ** *
15270951 GGCCAAAACTGCTTCCGAAAATATTTTTAAAAAAATCCCGAAGCGTAAAAAGTTTGAAAAATCGT
626 GGCCAAAACTCCTTCTGAAAA-AATTTT-AAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGT
15271016 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
689 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
15271081 AGTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
754 AATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
15271146 CACCCTATTGATCCACGGCTTGC-CTATCCCGTCTCTCTGTCCGACGTAGTGCCCGGCCGCCAGC
819 CACCCTATCGATCCACGGCTTGCGC-ATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCGCCCG-
15271210 TCGCCC
881 T--CCC
* * * * **
15271216 ATTTGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGA
1 --TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAA
* * * *
15271281 GGCTTGCGATAGTAGGATTGGCAGCATGCAGAGAGGGACCCAATCGATCCCCGGCTTGCGCATCC
64 GGGTTGC------AGCA---GCA-CA--CAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * ** **
15271346 CGACCCTTTGGCCGACTGAGCACCCGCACGCTTGTTTTATGGGTTGACTTAGGCATACGGAGTTC
117 CGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * * * *
15271411 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGGCTAAGATCAGATCGAACCGAGGGTTACGAC
182 ATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGC
* * * * * ** *
15271476 AGCAAATGCTGGGCTCGGGCATGTGCTGATGCCGCATTTTTCATCATCGGGAAACCATCATCGGA
247 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGA
* * * * *
15271541 GCATCGTCGGAGAACCTGACCAGTGGCATTGGGGTTCCGACGATCGGGCGGGCTGGGAGGGTGTG
312 GCATCGCCGGAGAACCTGACCACT-GCATTGGGGTTCCGATGATCGGGGGGGCCGGG-GGGTGTG
* * *
15271606 CGCACATGATATGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAT
375 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
15271671 CTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTGTAGCCATTA
440 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
15271736 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTAGAGTTTTTAG
505 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * *
15271801 CTGAAATTTTTTGTGCATGACAACAAAAGTACAAGGATCACGTCTACCATGTTTGGGGCCAAAAA
570 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
15271866 TCCTTATGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAA
635 TCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAA
* * * * *
15271931 AATGAGTCGTCTTGCCATGTAACTTCACGTGAAGGTTTAAGTGACCATTGTATGAATTTACTAGT
700 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AG-
* *
15271996 G--ATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
763 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
15272059 GATCTACGGCTTGCGCATCCCGTCTCTCT-GCC-GCGTAGTACCCGCCCGCCCGCCTGCCC
828 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCGCCCG--T-CCC
** * **
15272118 GTTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTTACAGTCTAAGATCAAACCGGACCGA
1 --TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAA
*
15272183 GGGTTGCGGTAGCAGGATCGGCAGCACGCAAAGAGGGACCCGACCGATCCCCGGCTTGCGCATCC
64 GGGTTGC---AGC---A---GCA-CA--CAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCC
* *** * * * * *
15272248 TGCCCCTCTGGCCGACTGAGCGTTCGTACGCTCGTTTTGTGGGTTGACTTAGGGATATGGAGTTC
117 CGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
15272313 ATTCCCTATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
182 ATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGC
* * * * **
15272378 AGCACATGCGGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGTTAGGGCACCATCACCGGA
247 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGA
* ** * * *
15272443 GCATCGCCAGAGAACCTGACCGGTGGCTTTGGGGTTCCGGTGATC-GGGGGGCCAGGGGGTGTGC
312 GCATCGCCGGAGAACCTGACCACT-GCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGC
* *
15272507 GCACAAGATGTGTGATGGGTGCTGGTA-------C-----TTGGCCCCCTATCCCTCATCAAACC
376 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
15272560 TTGAGAACTCACACGCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
441 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
15272625 AGTGT-TCAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGG
506 AGTGTCT-AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
15272689 CTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTCGTGCCAAAAC
570 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* ** * * * * *
15272754 TACTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATTAAAAATAGAA
635 TCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAA
*
15272819 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACA--C
700 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGC
** * *
15272882 CATAAAAATGGCAATT--TTTGCAG---TATGAAGAT-T-TCTAAA---A-CT------TTATCG
765 CATAAAAATGGC-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*** * * ** * *
15272930 AAGGAAGGCTTG-GC-T-CCGTCTATCTGGCCAACGTA-TG---CCTGCCCGT--A
829 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGTCCC
* * * * *
15272977 TCGTTTCGTC-GGTGGCATA-CCATACGGA----AATCCCAGTCTAAGA--A-ACC--ACAAAGT
1 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAG-
* * * * * * *
15273031 GTGGTACAGATCGTTTGCACACTGAGAAGGACCC-ACCGATCCCCGACATGCGCATCCCGCCCCT
65 G-GTTGCAG--C---AGCACACAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * ** * *
15273095 CTGGCC-AGCTGAGCATCTGCACGCCCGTTTCACGGGTTGACTT-GGGATAAGGAGTTCATTCCC
124 CTGGCCGA-CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
15273158 AATCTAAGCATGCGGAG-TCATTCCCCGTCT-AGATTGCGA-C-AACCG-GGGTTGC-GCAGCAC
188 AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCAAACCGAGGGTTGCGGCAGCAC
** * * *
15273217 ATGCTATGCTCTGGCATGTGCTGGTGCCGA-ATTTTTCTTTGTCGGGGCACCATCGCCGGAGCAT
252 ATGCTGGGCTCGGGCATGTGCTGGTGCC-ACATTTTTCTTCGTCGGGGCACCATCACCGGAGCAT
** *
15273281 CGCTTGAGAACCTGGCCGAC-GACATTGGGGTTCCGATGAT---------CGGGGGGTGTGCGCA
316 CGCCGGAGAACCTGACC-ACTG-CATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCA
* *
15273336 CATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCG
379 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
15273401 AGAACTCGA-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
444 AGAACTC-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
15273465 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTA
508 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
15273530 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATGACATCTACCAAGTTTGGGGTCAAAACT-C
573 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * **
15273594 TTTTCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
638 TTCT-GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
** * * * * * *
15273659 CGAGTTGTCTTGCCATGTAACATAAAGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCA
702 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCA
* * **
15273724 TAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACC-TCCTATTTATC
767 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * * *
15273788 CCCGGCTTGCGCATCCTGCCCCTTTGGCCGGC-T-GAG-CACCTGCACG---C
832 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGTCCC
** * *
15273835 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAG
1 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15273883 CATACGGAGT
Statistics
Matches: 3840, Mismatches: 501, Indels: 285
0.83 0.11 0.06
Matches are distributed among these distances:
826 35 0.01
833 2 0.00
834 91 0.02
835 7 0.00
836 4 0.00
837 9 0.00
838 321 0.08
839 40 0.01
840 73 0.02
841 15 0.00
843 2 0.00
844 11 0.00
845 3 0.00
846 9 0.00
847 2 0.00
848 6 0.00
849 2 0.00
850 2 0.00
851 12 0.00
855 18 0.00
856 9 0.00
857 13 0.00
858 19 0.00
859 13 0.00
860 8 0.00
862 1 0.00
864 19 0.00
867 9 0.00
868 5 0.00
869 6 0.00
870 13 0.00
876 2 0.00
877 1 0.00
880 5 0.00
881 1 0.00
882 9 0.00
885 3 0.00
886 15 0.00
887 724 0.19
888 310 0.08
889 4 0.00
890 8 0.00
891 60 0.02
892 4 0.00
893 3 0.00
894 4 0.00
895 2 0.00
896 4 0.00
897 1 0.00
898 3 0.00
899 65 0.02
900 32 0.01
901 10 0.00
902 329 0.09
903 104 0.03
904 210 0.05
905 152 0.04
906 211 0.05
907 17 0.00
908 326 0.08
909 68 0.02
910 353 0.09
911 7 0.00
912 4 0.00
913 6 0.00
914 2 0.00
915 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGG
GTTGCAGCAGCACACAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
ACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAA
CCTGACCACTGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGTCCC
Found at i:15271434 original size:26 final size:26
Alignment explanation
Indices: 15271398--15271450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15271388 GTTGACTTAG
*
15271398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
15271424 GCATATGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
15271450 G
1 G
15271451 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:15273892 original size:26 final size:26
Alignment explanation
Indices: 15273856--15273929 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
15273846 GTTGACTTAG
*
15273856 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15273882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
15273908 GCATACATAGTTCATTCCCAGT
1 GCATACGGAGTTCATTCCCAGT
15273930 GTAATATCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15274818 original size:26 final size:26
Alignment explanation
Indices: 15274782--15274834 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15274772 GTTGACCTAG
*
15274782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15274808 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15274834 G
1 G
15274835 ATTGAACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15275707 original size:26 final size:26
Alignment explanation
Indices: 15275671--15275723 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15275661 GTTGACTTAG
*
15275671 GCATACTGAGTTCATT-CCAAGTCTAA
1 GCATACAGAGTTCATTCCCAA-TCTAA
15275697 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15275723 G
1 G
15275724 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15276261 original size:903 final size:897
Alignment explanation
Indices: 15273882--15276495 Score: 3735
Period size: 887 Copynumber: 2.9 Consensus size: 897
15273872 CCCAGTCTAA
* * *
15273882 GCATACGGAGTTCATTCCCAGTCTAAGCATACATAGTTCATTCCCAGTGTAATATCGGATCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAAC
15273947 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
* * * *
15274012 TACCATCATCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCAGGCGATCAGGGGGG
131 TACCATCA-CG-AGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCAGGGGGG
* * *
15274077 TCGGGGGGGTGTGCGCACATGATGTGTGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
194 TC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
15274142 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTG
258 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGTTTTGCTG
* *
15274207 CCAGTAGCCATTACAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACAC
323 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
15274272 TTCGAGTTTTTTGTTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGT
388 TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGT
* * * *
15274337 TTGCGGACAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
453 TTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
** * * * *
15274402 ATGAAAAATAGAAAATTAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTGAGGGACCGTTGTA
518 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* *
15274467 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAGATGAAA-ATGTGCCTAAACCCACC
583 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT-AAAGATGTGCCTAAACCCACC
* * * * * *
15274531 TACCACCCTATTGATCCACAGCTTGTGCATCCCGTCGTTCTGGCCGGTGTACTGCCCGTCCGCCC
647 TACCACCCTATTGATCCACAGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGGCCGCCT
* * *
15274596 GCC-CGCT-CTTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCC
712 GCCGC-CTGCTCTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CC
* **
15274659 A-ACCGAGGGTTGCAGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCTTTCGATCCCCGGCTTG
775 AGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGA-GGGGACCCGATCGATCCCCGGCTTG
* * * ** *
15274723 CGCATCCTGCCCCTCTGTCCGGCTGAGCGTTCGCACGCTCGTTTCGTGGGTTGACCTAG
839 CGCATCCTACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACCTAG
* * * * *
15274782 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATTGAACCTG-A
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-GAA
* * * *
15274846 CCGAGGGTTGCGGTAGCACATGCTAGGCAT-GGGCAGGTGCTGGTGCAGCATTTTTCTTCGTCGA
65 CCGAGGGTTGCGGTAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGG
15274910 GG------CAC---CATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATC-GGGGGG
129 GGTACCATCACGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCAGGGGGG
* *
15274965 TCAGGGGGTGTGCGCA-AGTGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
194 TCAGGGGGTGTGCGCACA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
15275029 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTT-CT
258 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACA-GTTTTGCT
* * *
15275093 GCTAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
322 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15275158 CTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAG
387 CTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAG
* * * * *
15275223 TTTGGGGCCAAAACT-TTTTTCAAAAGGATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAA
452 TTTGGGGCCAAAACTCCTTTTGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
15275287 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACGT-AAATTGAAGGCTTAAGGGACCATT
516 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA-TGAAGGCTTAAGGGACCATT
* *
15275351 GTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATATAAAGATGTGCCTAAACCCA
580 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCA
* * *
15275416 CCTACCACCCTATTTATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGGCCGC
645 CCTACCACCCTATTGATCCACAGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGGCCGC
*
15275481 CTGTTCGCCTGCTGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
710 CTG-CCGCCTGCT-CTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
15275546 GCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGACCCGATCGATCCCCGGCTT
773 CCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGACCCGATCGATCCCCGGCTT
* * *
15275611 GCGTATCCTACCCCTTTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
838 GCGCATCCTACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACCTAG
* * *
15275671 GCATACTGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAAC
*
15275736 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
* * ** *
15275801 TACCATCACCGGAGCATCACCGGATAACCTGACCTTCGACATTGGGGTTCCGACGATCGAGGGGG
131 TACCATCA-C-GAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATC-AGGGGG
15275866 GTCAGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
193 GTCAG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** * * *
15275931 ATCCCAGATCAAACCTCAAGAACTCACACCCCCCTTAAAAACCATTTCAGATTTTACAGTTTTGC
257 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAAAGCATTTGAGATTTTACAGTTTTGC
15275996 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
321 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
15276061 ACTT-GCAGTGTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCTCATCTACCA
386 ACTTCG-AGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAAAAGGATCACATCTACCA
*
15276125 AGTTTGGGGCCATAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTCAAAA
450 AGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* *
15276189 ATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
515 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* * * *
15276254 TTATGAATTTACAACCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
580 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCA
* * * * *
15276319 CCAACCACCCTATCGATCCACAGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTG-CCTGCTCG
645 CCTACCACCCTATTGATCCACAGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGGC-CG
* * * * * * *
15276383 TCTGCCAGCCCGCTCATTTTGTTGGTTGGCTAAGGCATACGGAGTTCATTCTCAGTCTAAGATCG
709 CCTGCC-GCCTGCTC--TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
15276448 GACCAGACCGAGGGTTACGGCAGCATGATCGATAGCACGTAGAAGGGA
771 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGA
15276496 ACCTGACCGA
Statistics
Matches: 1522, Mismatches: 154, Indels: 72
0.87 0.09 0.04
Matches are distributed among these distances:
886 12 0.01
887 449 0.30
888 17 0.01
889 230 0.15
890 83 0.05
893 1 0.00
894 2 0.00
895 2 0.00
896 1 0.00
900 153 0.10
901 2 0.00
902 16 0.01
903 271 0.18
904 275 0.18
905 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAAC
CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
TACCATCACGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCAGGGGGGTC
AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGTTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTG
GGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACC
ACCCTATTGATCCACAGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGGCCGCCTGCCG
CCTGCTCTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
AGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGACCCGATCGATCCCCGGCTTGCGCATCC
TACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACCTAG
Found at i:15278914 original size:631 final size:630
Alignment explanation
Indices: 15277712--15278971 Score: 2412
Period size: 631 Copynumber: 2.0 Consensus size: 630
15277702 TCACAAATCT
15277712 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
15277777 ACCAAGTTTGGAGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTG
66 ACCAAGTTTGGAGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTG
*
15277842 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
131 AAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
15277907 ATTGTATGAATTTACAAGCAATAAAAATGAAATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
196 ATTGTATGAATTTACAAGCAATAAAAATGAAATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
15277972 CCACCCAACACCCCATCGATCAACGGCTTGCGCATCCCGTCTCTCTAGCCGACGAAGTGCCCGCC
261 CCACCCAACACCCCATCGATCAACGGCTTGCGCATCCCGTCTCTCTAGCCGACGAAGTGCCCGCC
15278037 CGTCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAAGCATACAGACTTCATTCCCAGTCTA
326 CGTCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAAGCATACAGACTTCATTCCCAGTCTA
*
15278102 AGATCAAACCGGACCGAGGGCTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCAAT
391 AGATCAAACCGGACCGAGGGCTGCGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCAAT
*
15278167 TCTCTTCATCGGGGCACCATTACCAGAGCATCACCGGAGAACTTGACCGGAGGCATTGGGGTTCC
456 TCTCTTCATCGGGGCACCATTACCAGAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTCC
*
15278232 GACGGTCGGGGGGGCCGAGGGGGGTGTGCACACATGATGTGCGATGCGTGCTGGTACTTGGGCCT
521 GACGGTCGGGGGGGCCGAGAGGGGTGTGCACACATGATGTGCGATGCGTGCTGGTACTTGGGCCT
15278297 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCA
586 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCA
15278342 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
15278407 ACCAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTT
66 ACCAAGTTTGGAGCCAAAAATCCTTCC-AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTT
*
15278472 GAAAATGGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
130 GAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
15278537 CATTGTATGAATTTACGAGCAATAAAAATGAAATTGGCATGCAGAAATATGAAGATGTGCCTAAA
195 CATTGTATGAATTTACAAGCAATAAAAATGAAATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
15278602 CCCCCCCAACACCCCATCGATCAACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGAAGTGCCCGC
260 CCCACCCAACACCCCATCGATCAACGGCTTGCGCATCCCGTCTCTCTAGCCGACGAAGTGCCCGC
15278667 CCGTCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAAGCATACAGACTTCATTCCCAGTCT
325 CCGTCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAAGCATACAGACTTCATTCCCAGTCT
* *
15278732 AAGATCAGACCGGACCGAGGGTTGCGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCAA
390 AAGATCAAACCGGACCGAGGGCTGCGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCAA
15278797 TTCTCTTCATCGGGGCACCATTACCAGAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTC
455 TTCTCTTCATCGGGGCACCATTACCAGAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTC
15278862 CGACGGTCGGGGGGGCCGAGAGGGGTGTGCACACATGATGTGCGATGCGTGCTGGTACTTGGGCC
520 CGACGGTCGGGGGGGCCGAGAGGGGTGTGCACACATGATGTGCGATGCGTGCTGGTACTTGGGCC
15278927 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
585 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
15278972 CCCTTAAAGA
Statistics
Matches: 618, Mismatches: 11, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
630 92 0.15
631 526 0.85
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (630 bp):
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGAGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTG
AAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCAATAAAAATGAAATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCCAACACCCCATCGATCAACGGCTTGCGCATCCCGTCTCTCTAGCCGACGAAGTGCCCGCC
CGTCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAAGCATACAGACTTCATTCCCAGTCTA
AGATCAAACCGGACCGAGGGCTGCGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCAAT
TCTCTTCATCGGGGCACCATTACCAGAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTCC
GACGGTCGGGGGGGCCGAGAGGGGTGTGCACACATGATGTGCGATGCGTGCTGGTACTTGGGCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCA
Found at i:15280478 original size:26 final size:26
Alignment explanation
Indices: 15280442--15280494 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15280432 GTTAACTTAG
15280442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
15280468 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15280494 G
1 G
15280495 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15280860 original size:879 final size:877
Alignment explanation
Indices: 15279685--15281549 Score: 2618
Period size: 879 Copynumber: 2.1 Consensus size: 877
15279675 GTTAGGGCAC
* ** * *
15279685 CATCGTCGGAGCATCGTCAGAGAACCTGGTCGACGGCAATGGGGTTCCGGCGATCGGGGGGCCA-
1 CATCGTCGGGGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAG
*
15279749 -GGGG-GTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATC
66 GGGGGTGTGTGCACACATG-TGTG--ATGGGTGCTGGTACTTGGCCCCTATATAGGCCCCCTATC
15279812 CCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
128 CCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
15279877 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
193 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
15279942 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTT
258 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTT
* * * *
15280007 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAGAGAA-CCCGAACTACAAAAAGTTTCGAAAATCA
323 GGGGCCAAAACTCCTTCCGAAAAAATTTTAA-AAAAGCCCGAACCACAAAAAGTTTCAAAAATCA
* * *
15280071 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTAT
387 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAC
* * *
15280136 GAATTTACAAGCCAGAAAAATGGCATTGGCACGCAGCAATATGAAGATGTGCCTAAACCGACCTA
452 GAATTTACAAGCCAGAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* *** * * * **
15280201 CCACCCTATCCATCCACGGCTTGCGCATCTCGTCTCTCTGG-CCG-G-CGAATTGCCCGCCTGCT
517 -CACCCCATCCATCCAAAACTTACGCATCCCGTCTCTCTGGCCCGCGCCCAACCGCCCGCCTGCT
* * * ** *
15280263 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAGTGAGGG
581 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCCGACCGAAGG
* ** * *
15280328 TTGTAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCAC
646 TTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTACGCAT-CCAC
* *
15280393 CCCTT-TGGCCGACTGAGTGCCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCAT
709 CCCTTCTGGCCGACTGAGCGCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCAT
* ** * ** *
15280457 TCCCAGTCTAAGCATACGGAGTTCATTCGTAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAG
774 TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
* ** *
15280522 CACATGTTGGGCTCGGGCTTATGCTGGCATCGTATTTTT
839 CACATGCTGGGCTAAGGCTTATGCTGGCACCGTATTTTT
* * ** *
15280561 CTTCGTCGGGGCATCGTCGGAGAACCTGACCGGTGGCGTTGGGGTTCCGACGATCGGGGGGGCCA
1 CATCGTCGGGGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCA
* *
15280626 GGGGGGGTGTGTGCACACAATGTATGATGGGTGCTGGTACTTGGCCCTTATATAGGCCCCCTATC
65 -GGGGGGTGTGTGCACAC-ATGTGTGATGGGTGCTGGTACTTGGCCCCTATATAGGCCCCCTATC
* * * *
15280691 TCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCC
128 CCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
15280756 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
193 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
15280821 CGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCGACAAAAATACAAGGATCACGTCTGCCAAGTTT
258 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTT
* * ** *
15280886 GGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAAGCCTGAACCGTAAAAAGTTTCAAAAATCGT
323 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCCCGAACCACAAAAAGTTTCAAAAATCAT
*
15280951 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACG
388 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACG
* *
15281016 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
453 AATTTACAAGCCAGAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
** * *
15281081 ACCCCATTGATCCAAAACTTACGCATCCCGTCTCTCTGGCCCACCCGCCCGCCCACCCGTCCGCC
518 ACCCCATCCATCCAAAACTTACGCATCCCGTCTCTCTGG----CCCG--CGCCCAACCGCCCGCC
*
15281146 TGGTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCCGACCG
577 TGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCCGACCG
15281211 AAGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTACGCATCC
642 AAGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTACGCATCC
** * ** *
15281276 TGCCCTTCTGGCCGACTGAGCGCTCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
707 ACCCCTTCTGGCCGACTGAGCGCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTC
* *
15281341 ATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGAC
772 ATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGAC
* * **
15281406 ATCACATGCTGGGCTAAGGCTTGTGCTGGTGCCGTATTTTT
837 AGCACATGCTGGGCTAAGGCTTATGCTGGCACCGTATTTTT
* *
15281447 CATCG-CTGGGGTACCATC-TCCAGAGAACCTGACCGACGGTATTGGGGTTCCGACGATAGGGGG
1 CATCGTC-GGGG---CATCGT-CAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * *
15281510 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
61 GCCAGGGGGGTGTGTGCACA-CATGTGTGATGGGTGCTGGT
15281550 CGATCCCCTC
Statistics
Matches: 867, Mismatches: 99, Indels: 36
0.87 0.10 0.04
Matches are distributed among these distances:
876 45 0.05
877 9 0.01
878 35 0.04
879 397 0.46
880 4 0.00
881 13 0.01
882 3 0.00
883 3 0.00
885 8 0.01
886 200 0.23
887 105 0.12
888 9 0.01
889 36 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (877 bp):
CATCGTCGGGGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAG
GGGGGTGTGTGCACACATGTGTGATGGGTGCTGGTACTTGGCCCCTATATAGGCCCCCTATCCCT
CATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCCCGAACCACAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAAT
TTACAAGCCAGAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACACC
CCATCCATCCAAAACTTACGCATCCCGTCTCTCTGGCCCGCGCCCAACCGCCCGCCTGCTCGTTT
CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCCGACCGAAGGTTGCA
GTAGCAGGATCGACAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTACGCATCCACCCCTTCT
GGCCGACTGAGCGCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGC
TGGGCTAAGGCTTATGCTGGCACCGTATTTTT
Found at i:15281357 original size:26 final size:26
Alignment explanation
Indices: 15281328--15281380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15281318 GTTGACTTAG
*
15281328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15281354 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15281380 G
1 G
15281381 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15284681 original size:881 final size:877
Alignment explanation
Indices: 15282286--15285426 Score: 4117
Period size: 885 Copynumber: 3.5 Consensus size: 877
15282276 CCCGCCCGCA
* * * * * *
15282286 CGCCCACCCGCACGTTTCGTCAGTTGGCTTAGGCATACAGACTTCATTCCCAGTCTAAGATCGGA
1 CGCCCACACGCTCGTTTCGT-GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
15282351 CCGGACC-AAGGGTTGA-GGCAGCACATGCTAGGCT-TGGCATGTGCTGGTGCCGCATTTTTCTT
65 CCAGACCGAAGGGTT-ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
** * * * *
15282413 CGTTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCCGCGAT
129 CGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGATCCAGCGAT
* * *
15282478 CGGGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTA
194 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
15282542 GCCCTCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
259 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
15282607 GTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
15282672 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGGATGCCAAAAAAAATACAGGCATCACATC
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACATC
* * *
15282737 TACCAAGTTTGGGGCCAAAACGCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
454 TACCAAGTTTGGGGCCAAAACACC-TTC-AAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTT
*
15282802 TGAAAATCATGAAAAAATAGAAAACGAGTCATCTTGTGATGAAACTTCACGTGAAGGCTTAAGGG
517 TGAAAATCATG-AAAAATAGAAAACGAGTCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGG
*
15282867 ACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
581 ACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
15282932 AACCCACCTACCGCCCTATCGATCCACGACTTGCGCATCCCGTCTCCCTGGAGTGCTTATTGCCC
646 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCCCTGGAGGGCTTAGTGCCC
* *
15282997 GCCCACCCG-TCCTTTCGCCCGCTCGTTTTGTC-GATTGGCTTAGGCATACGGAGTTCATTCCCA
711 GCCCACCCGCTCC--CCGCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
15283060 GTCTAAGATCGGACCAGATTGAGGGTTGCAGCAGCAGGATCGACAACATACAGAGGGGGACCCAG
773 GTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGA-GGGGACCCA-
*
15283125 TCGATCCCCGACTTTGCTTATCCCGCCCCTCTGGCCAGCTGAG
836 TCGATCCCCGACTTTGCTTATCCCGCCCCTCTGGCC-GGTGAG
* * * * *
15283168 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
1 CGCCCACACGCTCGTTTCGT-GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
** *
15283233 CCAGACCG-AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTT
65 CCAGACCGAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
** * * *
15283297 GCCAAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCAGCGATC
130 GCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGATCCAGCGATC
*
15283362 GGGGGGGCCGAGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
195 GGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
15283427 GCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
259 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
15283492 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAACTGGGGACACCTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * ** **
15283557 TTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGACAACAAAAATACATGGGTTGCATC
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACATC
*
15283622 TACCAAGTTTGGGGCCAAAAAACCTTCAAAAAAACTTTTAAAAAATCCTGAACTGTAAAAAGTTT
454 TACCAAGTTTGGGGCCAAAACACCTTC-AAAAAA-TTTTAAAAAATCCTGAACTGTAAAAAGTTT
* *
15283687 GGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGA
517 TGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGA
* *
15283752 CCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAA
582 CCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
*
15283817 ACCCACCTACCACCCTATCGATCCACGACTTGCGCGTCCCGTCTCCCTGGAGGGCTTAGTGCCCG
647 ACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCCCTGGAGGGCTTAGTGCCCG
15283882 CCCACCCGCTCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
712 CCCACCCGCTC-CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* *
15283947 TAAGATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGACGGCATGCAGAGGGGACCCGATCGA
776 TAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGACCC-ATCGA
* *
15284012 TCCCCGACTTTGCTTATCCCACCCCTCTGGCCGGTGAA
840 TCCCCGACTTTGCTTATCCCGCCCCTCTGGCCGGTGAG
* * *
15284050 CGCCCACATGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCACACGCTCGTTTCGT-GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
*
15284115 CCAGACCGAA-GGTTACGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
65 CCAGACCGAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
* * ** * ** *
15284179 ACCGGGGCACCATCGTCAGAGCATCGCCACAGAACCTGATCGGTGGCATTGGGGATAC-GCTGAT
130 GCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGATCCAGC-GAT
* *
15284243 CGAGGGGGCCGGGGGGGTGTGCGCACATGATAG-GTGATGGGTGCTGGTACTTGGCCCTTATATT
194 CGGGGGGGCCGGGGGGGTGTGCGCACATGAT-GTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
15284307 GGCCCCCTATCCCTCATCAAATCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTATA
258 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * * * *
15284371 GGTTTGCTGCCAATAGCCATTAATGTGTTTGAAATGGGGACACTTTTTT-ATAGTGGTCACAAAA
323 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCA-AATGGTCACAAAA
* * *
15284435 TCTTGTACACTTTGATTTTTTAGCTG-ATTCTTTTTGTGTATGCCAACAAAAATACAAGCATCAC
387 TCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGCATCAC
* * * *
15284499 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAATAATTTTAAAAAATCTTGAACTGCAAAAAG
451 ATCTACCAAGTTTGGGGCCAAAACACCTTC-AAAA-AATTTTAAAAAATCCTGAACTGTAAAAAG
* * * *
15284564 TTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAA
514 TTTT-GAAAATCATGAAAAATAGAAAACGAGTCATCTTGCGATGAAACTTCACGTGAAGGCTTAA
* * * *
15284629 GGGACCATTGTGTGAATTTACAAGCCGTAAAAATGGCATTGGCACACAGAAATATGTAGATGTGC
578 GGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * ** ** *
15284694 CTAAACCCACCTACCACCCTATCGATTCACTG-CTTGCGCATCTCGTCTTTCTGGCTGGCATAGT
643 CTAAACCCACCTACCACCCTATCGATCCAC-GACTTGCGCATCCCGTCTCCCTGGAGGGCTTAGT
* * * * * * *
15284758 ----ACCTACCTGCCCACCCGCCCACTCGTTTCGTCAGTTGGCCTAGGCATACGGAGTTTATTCC
707 GCCCGCCCACCCGCTC-CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
15284819 TAGTCTAAGATCAGACCGGATCGAGGGTTACGGTAGCAGGATCAATAGCACGCAAAAGGGGACCC
771 CAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGC-AGAGGGGACCC
* * * * *
15284884 AACCGATCCTCGGCTTGTGC--ATCCTGCCCCTCTGGTCGGCTGAG
835 -ATCGATCCCCGACTT-TGCTTATCCCGCCCCTCTGGCCGG-TGAG
* * *
15284928 CGGCCACACGCTCGTTTCGTGAGTTGACTTTGGCATACAGAGTTCATTCTCAGTCTAAGCATACG
1 CGCCCACACGCTCGTTTCGTG-GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-
*
15284993 GAGTTCTTTCCTAGTCTACGATCGGACCAGATCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
62 -AG---------A--C--C-A---GACC-GA---AGGGTTACGGCAGCACATGCTGGGCTCGGGC
* * * * * **
15285058 ATGTGCTGTTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTTGGAGAACCTGAC
105 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* ** * * * * *
15285123 CGACGGCAATGGGGATCTGGTGATCGGGTGGGCCGGGTGGGTGTGCGAACATGATGTGTGATGGG
170 CGACGGCATTGGGGATCCAGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
15285188 TGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
235 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
15285253 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACA
300 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACA
*
15285318 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
365 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
15285383 TAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
430 CAACAAAAATACAAGCATCACATCTACCAAGTTTGGGGCCAAAA
15285427 TACAAGGCCC
Statistics
Matches: 1989, Mismatches: 217, Indels: 83
0.87 0.09 0.04
Matches are distributed among these distances:
877 116 0.06
878 76 0.04
879 8 0.00
880 193 0.10
881 254 0.13
882 270 0.14
883 135 0.07
884 283 0.14
885 290 0.15
886 1 0.00
891 1 0.00
893 1 0.00
895 1 0.00
896 1 0.00
899 4 0.00
900 2 0.00
903 2 0.00
904 186 0.09
905 161 0.08
906 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (877 bp):
CGCCCACACGCTCGTTTCGTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGATCCAGCGATCG
GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACATCTA
CCAAGTTTGGGGCCAAAACACCTTCAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTTTGAA
AATCATGAAAAATAGAAAACGAGTCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCCCTGGAGGGCTTAGTGCCCGCCCA
CCCGCTCCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGACCCATCGATCCCCG
ACTTTGCTTATCCCGCCCCTCTGGCCGGTGAG
Found at i:15288968 original size:26 final size:26
Alignment explanation
Indices: 15288932--15288984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15288922 GTTGACTTAG
15288932 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
15288958 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
15288984 G
1 G
15288985 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:15291211 original size:781 final size:782
Alignment explanation
Indices: 15289010--15291354 Score: 3080
Period size: 805 Copynumber: 3.0 Consensus size: 782
15289000 GGGTTGCGAC
* * * * *
15289010 AGCACATGCTGGGCTCTG-GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGG
1 AGCACAAGCTGGGCTC-GAGCATGTGCTGGTGCCGCAATTTTCTTCGCCAGGGCACCATC-TC--
* ** * * *
15289074 AGCATCGCCAGAGAACCTGATTGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTG
62 -GC--CG---GAGAACTTGACCGACGGCATTTGGGTTTCGATGATC-GGGGGGCCGGGGGGGGTG
* *
15289139 TGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAA
120 TGCACACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
15289204 ACCTCGAGAACTAACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
185 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
15289269 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
250 TAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
15289334 GGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGACCAAGTCTACCAAGTTTGGGGCCAA
315 AGCTG-ATTGTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * ** **
15289398 AACTCCATCCAAGAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTTGAAAATTGTGAAAAATA
379 AACTCCTTCGAA-AAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * *
15289463 GAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGACCTAAGGGACCATTGTATGAATTTACA
442 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
15289528 AGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTA
507 AGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
15289592 TCGATCCACGACTTACGCATCTCGTCTCTCTGGCCGGCGT-AGTGCCCGCTCGCCCACCCACCCA
571 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-TAAGTG--C-C-CGCCCGCCCGCCCG
* * * *
15289656 CTCGTTTCATCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGGTCAGATCAGATCGAG
631 CTCGTTTCATCGATTGGCTTAGGCATA-CG-G-----TCCCAGTCTAAGGTCAGACCAAACCGAG
* * ***
15289721 GGTTACGGTGGTAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCTCCGGCTTGTTCATCAC
689 GGTTACGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCTCCGGCTTACGCATCAC
* * * *
15289786 GCCCCTTTGGCCGAATCGAGGGTTACGGT
754 ACCCCTCTGGCCGAACCGAGGGTTACAGT
* * *
15289815 AGCACAAGCTGGGCTCGATCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGCCGGA
1 AGCACAAGCTGGGCTCGAGCATGTGCTGGTGCCGCAATTTTCTTCGCCAGGGCACCAT-------
* *
15289880 GCATCGTCGGAGAACTTGACCGACGGCATTTGGGTTTCGACGATCGAGGGGGCCGGGGGGGGTGT
59 -C-TCGCCGGAGAACTTGACCGACGGCATTTGGGTTTCGATGATCG-GGGGGCCGGGGGGGGTGT
* *
15289945 GCACACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAA
121 GCACACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
15290010 CCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATT
186 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
15290075 AAAGCGT-TTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
251 AAAGTGTCTT-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
15290139 AGCTGAATGTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAA
315 AGCTGATTGTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
15290204 ACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAG
380 ACTCCTT-CGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
15290269 AAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
443 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
15290334 GCCATATAAATGGCATTGGCACGCAAAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATC
508 GCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
15290399 GATCCACAGCTTGTGCATCCCATCTCTCTGGCCGGCTAAGTGCCCGCCCGCCCGCCCGCTCATTT
573 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCTAAGTGCCCGCCCGCCCGCCCGCTCGTTT
*
15290464 CATCGATTGGCTTAGGCATACGG-CCTAGTCTAAGGTCAGACCAAACCGAGGGTTACGGTAGTAG
638 CATCGATTGGCTTAGGCATACGGTCCCAGTCTAAGGTCAGACCAAACCGAGGGTTACGGTAGTAG
* * *
15290528 GATCGACAGCACGTAGAGGGGGACCCGACTGATC-CTCGGCTTACGCCTCACACCCCTCTGGCCG
703 GATCGACAGCACGCAGAGGGGGACCCGACCGATCTC-CGGCTTACGCATCACACCCCTCTGGCCG
* *
15290592 GACCGAGGGTTGCAGT
767 AACCGAGGGTTACAGT
* * *
15290608 AGCACATGCTGGGTTCGAGCATGTGTTGGTGCCGCAATTTTCTTCGCCAGGGCACCAT-T-GCCG
1 AGCACAAGCTGGGCTCGAGCATGTGCTGGTGCCGCAATTTTCTTCGCCAGGGCACCATCTCGCCG
*
15290671 GAGAACTTGACCGACGGCATTTGGGTTTCGATGATCGGGGGGCCGGGGGGGGTGTGCACACCTGA
66 GAGAACTTGACCGACGGCATTTGGGTTTCGATGATCGGGGGGCCGGGGGGGGTGTGCACACATGA
* * *
15290736 TGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
131 TGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
15290801 TCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTT
196 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
15290866 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTT
261 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTT
* * * *
15290931 TTTGTGCAAGCGAACAAAAATACAAGGGTCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGA
326 TTTGTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GA
* *
15290996 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATATAAAACGAGTCG
390 AAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
15291061 TCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
454 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
15291126 GGCATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCT
519 GGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
15291191 TGCGCATCCCGTCTCTCTGGCCGGC-ATAGT----GCCCGCCCGTCCGCTCGTTTCATCGGTTGG
584 TGCGCATCCCGTCTCTCTGGCCGGCTA-AGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGG
* * ** * * * * *
15291251 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGAT
648 CTTAGGCATAC-G-G-TC---CC-AGTCTAAGGTCAGACCAAACCGAGGGTTACGGTAGTAGGAT
* ** *
15291316 CAACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
706 CGACAGCACGCAGAGGGGGACCCGACCGATCTCCGGCTT
15291355 GCACCTTCTG
Statistics
Matches: 1369, Mismatches: 141, Indels: 80
0.86 0.09 0.05
Matches are distributed among these distances:
777 38 0.03
778 1 0.00
779 1 0.00
780 3 0.00
781 473 0.35
782 41 0.03
783 1 0.00
784 1 0.00
785 64 0.05
786 1 0.00
792 1 0.00
793 153 0.11
799 1 0.00
800 1 0.00
801 37 0.03
802 1 0.00
803 1 0.00
804 6 0.00
805 533 0.39
806 5 0.00
808 2 0.00
810 1 0.00
813 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (782 bp):
AGCACAAGCTGGGCTCGAGCATGTGCTGGTGCCGCAATTTTCTTCGCCAGGGCACCATCTCGCCG
GAGAACTTGACCGACGGCATTTGGGTTTCGATGATCGGGGGGCCGGGGGGGGTGTGCACACATGA
TGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTT
TTTGTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAA
AAAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCTAAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTT
AGGCATACGGTCCCAGTCTAAGGTCAGACCAAACCGAGGGTTACGGTAGTAGGATCGACAGCACG
CAGAGGGGGACCCGACCGATCTCCGGCTTACGCATCACACCCCTCTGGCCGAACCGAGGGTTACA
GT
Found at i:15292350 original size:26 final size:26
Alignment explanation
Indices: 15292314--15292372 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
15292304 GTTGACTTTG
* *
15292314 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
15292340 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
15292366 -CAT-CAGA
1 GCATACAGA
15292373 CCGAACCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:15292712 original size:13 final size:14
Alignment explanation
Indices: 15292674--15292704 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15292664 AATAGGGACA
15292674 CTTCAAGTTTTTAG
1 CTTCAAGTTTTTAG
*
15292688 CTTCGAGTTTTTAG
1 CTTCAAGTTTTTAG
15292702 CTT
1 CTT
15292705 AATTTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (14 bp):
CTTCAAGTTTTTAG
Found at i:15293975 original size:26 final size:26
Alignment explanation
Indices: 15293939--15293991 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15293929 GTTGGCTTAG
15293939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15293965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15293991 G
1 G
15293992 ATCGGATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15294674 original size:743 final size:731
Alignment explanation
Indices: 15293196--15295420 Score: 3065
Period size: 743 Copynumber: 3.0 Consensus size: 731
15293186 TCTTGGCTGA
* * *
15293196 CTTAGGAATATGGAGTTCATTCCCAATCTAAGCATAGGAGTTCATTCCCAATCTAAGATCAGACC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCC-ATCTAAGATC-GA--
* * *
15293261 GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGCGCTGGTGCCTCATTTTTCTTCGTC
62 -GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CTTATTTTTCTTCGTC
* * *
15293326 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA-TCGGTGGCATTAGGGTTCCGACGATCGG
125 GGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACT-GGCGGCATTGGGGTTCCGACGATCGG
* * * * *
15293390 GGGGGCC-GAGGGGGTGTGCGCAGACGCTGTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGC
189 GGGGGCCGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
15293454 CCCCTATCCCTCATCAAACCT-TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
254 CCCCTATCCCTCATCAAACCTCT-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
15293518 TTTGCTGCAAGTAACCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
318 TTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
15293583 TTTTCACTTCGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCT
383 TGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
15293648 ACCAAGTTTGGGGCCACAACTCCTTCCAAAAAAATTTT-AAAAATCTCGAATCGTAAAAAGTTTT
448 ACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGACT-GTAAAAAGTTTC
* * *
15293712 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
511 GAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * **
15293777 AATTGTATAAATTTA-AAACCAATAAAAATGGCATTGTCACATAGAAATAT-AAGATGTGCCTAA
576 CATTGTATGAATTTACAAGCC-ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* *
15293840 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGACAGGCGTAGTGCCTG
640 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGAC-GGCGTAGTGCCCG
*
15293905 CCCGCCCGCCTGCTTGTTTGGTCGGTTGG
704 CCCG-CCGCCTGCTTGTTTCGTCGGTTGG
15293934 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCA-TCTAAGATC-G--
*
15293999 TAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCTATATTTTTCTTCGT
61 -AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-TATTTTTCTTCGT
* * * * * * *
15294064 CGGGGTACCGTCGCCGGAGCATTGCCGGAGAACCTGACTGACGGCATTGGGGTTCCAACGATCGA
124 CGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGG
*
15294129 GGGGGCCGGGGGGCGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
189 GGGGGCC-GGGGG-GGG-TGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
* *
15294194 GGCCCCCTATCACTCATCAAACCTCTAGAACTCACACCCCCTTAGAGAGCATTTGAGATTTTACA
251 GGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
15294259 GCTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
316 GGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
15294324 CTTGTTCACCTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGT
381 CTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
15294389 CTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAATTTTAAAAAATCTCGACTGCAAAAAGTTTC
446 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGACTGTAAAAAGTTTC
* *
15294454 AAAAATCATGAAAAATAGAAAATGAGTCATCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGAC
511 GAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
15294519 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
576 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
* *
15294584 CCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGC
641 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GACGGCGTAGTGCCCGC
** **
15294649 CCGTCCGCCCACTCATTTCGTCGGTTGG
705 CCG-CCGCCTGCTTGTTTCGTCGGTTGG
*
15294677 CTTAGGCATACGGAGTTCATTCCTAGTCT----A-A-GA--TCA-T---A-C-----T-G-GACC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCATCTAAGATCGAGACC
* * * * *
15294722 GAGGGTTGCGGTAGCACATGCTAGGCTCTGGCATTTGCTGGTGCCGTATTTTTCTTC-TCCGGGG
66 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CTTATTTTTCTTCGT-CGGGG
* * *
15294786 CACCATC-ACGGAGCATCGCCGGAGAACCTGACCGGCGGCAATGGGGTTTCGACGATCGGGGGGG
129 CACCATCGACGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
15294850 TCGGGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCT
194 CCGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
15294915 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * **
15294980 GCCT-GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGACACAAAATCTTGTAG
324 G-CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTC
* *
15295044 ACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAA
388 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
** * * *
15295109 GTTCAGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-TTGAACCGTAAAAAGTTTCGAAAA
453 GTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCTCG-ACTGTAAAAAGTTTCGAAAA
* * *
15295173 TAATGAAAAATAGAAAATGAGTCATCTAGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTG
516 TCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
15295238 TATGAATTTACAAGCCATAAAAATGGCATT-GCATGCAGAAATATGAAGATGTGCCTAAACCCAC
581 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
15295302 C-AACACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCTGCT
646 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GACGGCGTAGTGCCCGCCCGC-
* *
15295366 CGCCTGCTTGTTTCATCGGTTGA
709 CGCCTGCTTGTTTCGTCGGTTGG
*
15295389 CTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15295421 ATTGGATCAG
Statistics
Matches: 1338, Mismatches: 124, Indels: 73
0.87 0.08 0.05
Matches are distributed among these distances:
711 1 0.00
712 99 0.07
713 282 0.21
714 129 0.10
715 5 0.00
716 51 0.04
717 63 0.05
718 1 0.00
721 1 0.00
723 1 0.00
728 1 0.00
730 1 0.00
733 1 0.00
734 3 0.00
736 2 0.00
738 37 0.03
739 141 0.11
740 1 0.00
741 3 0.00
742 123 0.09
743 389 0.29
744 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (731 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCATCTAAGATCGAGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTTATTTTTCTTCGTCGGGGCA
CCATCGACGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
TAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGACTGTAAAAAGTTTCGAAAATCATG
AAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACGGCGTAGTGCCCGCCCGCCGCCTGC
TTGTTTCGTCGGTTGG
Found at i:15295120 original size:713 final size:716
Alignment explanation
Indices: 15293965--15295422 Score: 2187
Period size: 713 Copynumber: 2.0 Consensus size: 716
15293955 CCCAGTCTAA
* * *
15293965 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * *
15294030 CTCGGGCATGTACTGGTGCTATATTTTTCTTCGTCGGGGTACCGTCGCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTACTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGA
* *
15294095 ACCTGACTGACGGCATTGGGGTTCCAACGATCGAGGGGGCCGGGGGGCGGGTTGTGCGCACATGA
131 ACCTGACCGACGGCAATGGGGTTCCAACGATCGAGGGGGCCGGGGGGCGGGTTGTGCGCACATGA
* *
15294160 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCTAGAAC
196 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAAC
*
15294225 TCACACCCCCTTAGAGAGCATTTGAGATTTTACAGCTTTGCTGCTAGTAGCCATTAAAGTGTCTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCTAGTAGCCATTAAAGTGTCTG
* * *
15294290 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACCTCGAGTTTTTAGCTGAATTTT
326 AAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGT
* **
15294355 TTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTAC-CA
391 TTTATGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTCAGGGCCAAAACTCCTACTCA
* *
15294419 AAAAATTTTAAAAAATCTCG-ACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCA
456 AAAAATTTTAAAAAAT-TCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCA
** *
15294483 TCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
520 TCTAGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
15294548 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
585 GGCATT-GCATGCAGAAATATGAAGATGTGCCTAAACCAACC-AACACCCTATCGATCCACGACT
* * * * *
15294613 TGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCG-TCCGCCCACTCATTTCGTCGGTTGG
648 TGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCT-CGCCCACTCATTTCATCGGTTGA
15294677 CTTAG
712 CTTAG
* * * *
15294682 GCATACGGAGTTCATTCCTAGTCTAAGATCATACTGGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * *
15294747 CTCTGGCATTTGCTGGTGCCGTATTTTTCTTC-TCCGGGGCACCATC-ACGGAGCATCGCCGGAG
66 CTCGGGCATGTACTGGTGCCATATTTTTCTTCGT-CGGGGCACCATCGACGGAGCATCGCCGGAG
* * * * * *
15294810 AACCTGACCGGCGGCAATGGGGTTTCGACGATCGGGGGGGTC-GGGGG-TGG-TGTGCGCACATG
130 AACCTGACCGACGGCAATGGGGTTCCAACGATCGAGGGGGCCGGGGGGCGGGTTGTGCGCACATG
* * *
15294872 ATGTGCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAA
195 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAA
* *
15294937 CTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCT-GTAGCCATTAAAGTGTC
260 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTG-CTAGTAGCCATTAAAGTGTC
* * *
15295001 TGAAATGGGGACACTTTTTTTAAATGGACACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATT
324 TGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATT
* * *
15295066 GTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTCAGGGCCAAAACTCCTTCT
389 GTTTTATGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTCAGGGCCAAAACTCCTACT
* * * *
15295131 GAAAAAATTTTAAAAAATTTGAACCGTAAAAAGTTTCGAAAATAATGAAAAATAGAAAATGAGTC
454 CAAAAAATTTTAAAAAATTCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTC
15295196 ATCTAGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
519 ATCTAGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
15295261 TGGCATTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACACCCTATCGATCCACGACTT
584 TGGCATTGCATGCAGAAATATGAAGATGTGCCTAAACCAACCAACACCCTATCGATCCACGACTT
* ** **
15295326 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCTGCTCGCCTGCTTGTTTCATCGGTTGACT
649 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGCCCACTCATTTCATCGGTTGACT
15295391 TAG
714 TAG
*
15295394 GCATACAGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
15295423 TGGATCAGAC
Statistics
Matches: 667, Mismatches: 69, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
712 104 0.16
713 283 0.42
714 129 0.19
715 5 0.01
716 51 0.08
717 95 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTACTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGA
ACCTGACCGACGGCAATGGGGTTCCAACGATCGAGGGGGCCGGGGGGCGGGTTGTGCGCACATGA
TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCTAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGT
TTTATGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTCAGGGCCAAAACTCCTACTCA
AAAAATTTTAAAAAATTCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCAT
CTAGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGCATGCAGAAATATGAAGATGTGCCTAAACCAACCAACACCCTATCGATCCACGACTTGC
GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGCCCACTCATTTCATCGGTTGACTTA
G
Found at i:15296472 original size:26 final size:26
Alignment explanation
Indices: 15296443--15296495 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15296433 GTTGACTTAG
*
15296443 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15296469 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15296495 G
1 G
15296496 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15297370 original size:26 final size:26
Alignment explanation
Indices: 15297340--15297392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15297330 GTTGACTTAG
*
15297340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15297366 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15297392 G
1 G
15297393 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15298269 original size:26 final size:26
Alignment explanation
Indices: 15298233--15298285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15298223 GTTGACTTAG
*
15298233 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15298259 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15298285 G
1 G
15298286 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15298594 original size:902 final size:895
Alignment explanation
Indices: 15294682--15302317 Score: 9670
Period size: 901 Copynumber: 8.5 Consensus size: 895
15294672 GTTGGCTTAG
* * * * * *
15294682 GCATACGGAGTTCATTCCTAGTCTAAGATCATACTGGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15294747 CTCTGGCATTTGCTGGTGCCGTATTTTTCTTC-TCCGGGGCACCATCACGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTCCCCT-TTTTTCTTCGT-CGGGGCACCATC-CGGAGCATCG-CGGAGA
* *
15294811 ACCTGACCGGCGGCAATGGGGTTTCGACGATCGGGGGGGTCGGGGGTGGTGTGCGCACATGATGT
127 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGG-GGTGTGCGCACATGATGT
* * *
15294876 GCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
15294941 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
* * *
15295006 TGGGGACACTTTTTTTAAATGGACACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTGTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
15295071 GTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTCAGGGCCAAAACTCCTTCTGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
15295136 AATTTTAAAAAAT-TTGAACCGTAAAAAGTTTCGAAAATAATGAAAAATAGAAAATGAGTCATCT
450 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15295200 AGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
15295265 ATT-GCATGCAGAAATATGAAGATGTGCCTAAACCCACC-AACACCCTATCGATCCACGACTTGC
580 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15295328 GCATCCCGTCTCTCTAGCCGACGTAGTG-C-CCGCCTG-CTCGCCTGCTTGTTTCATCGGTTGAC
645 GCATCCCGTCTCTCTAGCCGACGTAGTGCCGCCGCCCGCCT-GCCCGCTCGTTTCGTCGGTTGGC
* * * * ** * *
15295390 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTT-CAGTAGCAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCAAGATC
* * * * * * * * * * *
15295454 AGTAGCACGTAGAAGGGGACCCGACTGATCCCCGGCTTGCTCTTTCCGTCCCTCTGGCAGACTGA
774 GGCAGCAC-CAGAGGGGGACCCGACTGATCCCCGGCTTTCGC-ATCCGACCCTTTGGCCGGCTGA
* *
15295519 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAA
837 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15295578 GCGTATGGAGTTCATTCCCAGTCTAAGA-TAGGACCGGACCGAGGGTTGCGACAGTACATACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTA-GACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15295642 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCTTCGGGGCACCAT-C---G---C-CGGAGAAC
65 GCTCGGGCATGTGCTGGTCCCCT-TTTTTCTTCGTCGGGGCACCATCCGGAGCATCGCGGAGAAC
* * * ** * *
15295699 CTGACCGGGGGTATTAGGGTTCCGACGATCGGGGAGACCGAGGGGGTGTGTGCACATGATGTGCG
129 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGTCGGGGGGGTGTGCGCACATGATGTGCG
* *
15295764 ATGGGCGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15295829 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAATTGTCTGAAATGG
258 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGG
15295894 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
15295959 CATGCCAACAAAAATACAAGGATCACGTCTACCAAG--CGGGGACAAAAATCCTTTCGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
15296022 TTAAAAAAATCCCAAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
453 TTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
15296087 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
15296152 TGGCACACAAAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGGGC
582 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
15296217 ATCCCGTCTCTCT-GCCCGACGTAGTGCCAGGCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
647 ATCCCGTCTCTCTAG-CCGACGTAGTGCC--GCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
15296281 TTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGACCAAGAGTTGTGGCAGTAAGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCAAGATC
* * * * * ** *
15296346 GGCAGCACCAGAGGGGGACCCGGCTGATCCCTGGCATTCGCAT-CGCATTCTTTTTCCCGGTTGA
774 GGCAGCACCAGAGGGGGACCCGACTGATCCCCGGCTTTCGCATCCG-A-CCCTTTGGCCGGCTGA
*
15296410 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15296469 GCATACAGAGTTCATTCTCAGTCTAAGATTAGATCGGACTGAGGGTTGCGGCAGCACATG-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15296533 CTCGGGCATGTTCTGTTACCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGA
66 CTCGGGCATGTGCTGGT-CCCCTTTTTTCTTCGTCGGGGCACCATC--CGGAGCATC-GCGGAGA
*
15296598 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGTACATGATGTG
127 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGGTGTGCGCACATGATGTG
15296663 CGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15296728 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTATAGCCATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAAT
* * *
15296793 GGGGACACTTTTTTCGAATGGACACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTGTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15296858 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACGCCTTCTGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15296923 ATTTTAAAAAAT-TTGAACCGTAAAAAGTTTCAAAAATAATGAAAAATAAAAAACGAGTCATCTT
451 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
**
15296987 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
15297052 TT-GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
581 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * *
15297116 CATCCCATCTCTCTAGCCGACGTAGTG-C-CCGCCTGCCCACCCGCTTGTTTCATCGATTGGCTT
646 CATCCCGTCTCTCTAGCCGACGTAGTGCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * ** * * * *
15297179 AGGCATACAGAGTTCATTCCCAGTCTAAGGTTGGATCAGACTGAGGGTTGCAGCAGCAGGATCAG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCAAGATCGG
* * * * * * * * * * *
15297244 TAGCACGTAGAAGGGGACCC-AATCGATCCCCGGCTTGCCCTTCTCGTCCCTCTAGCCGACTGAG
776 CAGCAC-CAGAGGGGGACCCGACT-GATCCCCGGCTTTCGCATC-CGACCCTTTGGCCGGCTGAG
* *
15297308 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
15297366 GCATATAGAGTTCATTCCCAGTCTAAGA-TAGGACCGGATCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTA-GACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15297430 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTTCGGGGCACCAT------CA-C-CGGAGAAC
65 GCTCGGGCATGTGCTGGT-CCCCTTTTTTCTTCGTCGGGGCACCATCCGGAGCATCGCGGAGAAC
* * * * *
15297487 CTGACCGGTGGTATTGGGGTTTCGACGATCGGGGGGCCCGGGGGGGTGTGTGCACATGATGTGCG
129 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-TCGGGGGGGTGTGCGCACATGATGTGCG
* *
15297552 ATGGGCGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
15297617 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCATGTAGCCATTAAATTGTCTAAAATGG
258 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGG
15297682 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
15297747 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGACAAAAATCCTTCCGAAAATAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
15297812 TTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
453 TTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
15297877 CCACGAAACTTCACGTGAAGGCTTAAGTGTCCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15297942 TGGCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTGTCGATCCACGACTTGCGC
582 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
15298007 ATCCCGTCTCTCTGGCCGATGTAGTGCCTGGTCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
647 ATCCCGTCTCTCTAGCCGACGTAGTGCC--GCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
* * *
15298072 TAGGCATACGGAGTTCATTCCCATTCTAAGATCGAACCAGACCAAGAGTTGTGGTAGCAAGATCG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCAAGATCG
* * **
15298137 GCAGCGCCAGAGGGGGACCCGGCTGATCCCCGG-TATTCGCATCACGACCCTTTTACCGGCTGAG
775 GCAGCACCAGAGGGGGACCCGACTGATCCCCGGCT-TTCGCATC-CGACCCTTTGGCCGGCTGAG
15298201 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15298259 GCATACAGAGTTCATTCTCAGTCTAAGATTAGATCGGACCGAGGGTTGCTGCAGCACATG-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
15298323 CTCGGGCATGTGCTGGTACCCCTTTTTTCTTCGTCGGGGCACCATTGCTGGAGCATCGTTAGAGA
66 CTCGGGCATGTGCTGGT-CCCCTTTTTTCTTCGTCGGGGCACCA-T-CCGGAGCATCG-CGGAGA
* * * * *
15298388 ACCTGACCGACGGCCTTGCGGTTCCGACAATCGGGGGGTCAGGGGGGTGTGCGCACATGATGTGC
127 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* * * *
15298453 GATGGGTGCCGGTACTAGGCCCCTATATTAGCCTTCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15298518 CCCCCTTAAAGTGCATTTGAGATTTTACAGCTTTGCTACCTGTAGCCATTAAAGTGTCTGAAATG
257 CCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATG
*
15298583 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTTGAGTTTTTAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * *
15298648 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTCAGGGACAGAACCCCTTCCGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
15298713 TTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
452 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
15298778 CCATGAATCTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAG
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15298843 TGGCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
582 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
15298908 ATCCCATCTCTCTGGCTGGCGTAGTGCCCGGCCGCCCGCCTGCCCGCTCGTTTTGTCGGTTGGCT
647 ATCCCGTCTCTCTAGCCGACGTAGTG-CC-GCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
15298973 TAGGCACATGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGAGTTGCGGTAGCAATATCG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCAAGATCG
* ** * * * *
15299038 ACAGCACCAGAGGGGGACCCGGTTGATCCCCGGCATTCGCAT-CGTGCCCTTTTTGCCGGCTGAA
775 GCAGCACCAGAGGGGGACCCGACTGATCCCCGGCTTTCGCATCCG-ACCC-TTTGGCCGGCTGAG
* * * *
15299102 CGCCCGAATGCTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
15299160 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATG-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15299224 CTCGGGCATGTTCTGGTACCACTTTTTTCTTCGTCGGGGCACCAT-C---G---C-CGGAGCACC
66 CTCGGGCATGTGCTGGT-CCCCTTTTTTCTTCGTCGGGGCACCATCCGGAGCATCGCGGAGAACC
* * * *
15299281 AGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTC-AGGGGGTGTGCGCACATGATGTGCAA
130 TGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGTCGGGGGGGTGTGCGCACATGATGTGCGA
* * *
15299345 TGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCATCCTCAAACCTCGAGAACTCACACC
194 TGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
15299410 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGG
259 CCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGG
* * *
15299475 GACACTTTATTCAAAAGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
15299540 AAGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCGAAAA-TCCTTCCGAAAAAAT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAAT
****
15299604 TTT-AAAAATCTCGAATAACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
15299668 CATGAAACTTCATGTGAAGGCTTGAGGGACCATTGTATAAATTTACAAGCAATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
15299733 GGCA-AGTAGAAATAT-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
583 GGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
15299796 ATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCTACCC-ACTCGGCCGCTCGTTTCGTCAGTTGGC
647 ATCCCGTCTCTCTAGCCGACGTAGTG-CCGCC-GCCCGCCT-GCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
15299860 TTAGGCATACTGAGTTCATTCCCAGTCTAAGATC-AGACCACACTAAGGGTTACGGTAGTAGGAT
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCAAGGGTTGCGGTAGCAAGAT
* * ** ** * * *
15299924 CGGCAGTATGCAGAGGGGGACCCGACCAATCGTCGACTTGCGCATCCCG-CGCCTCTGGCCGGCT
773 CGGCAGCA-CCAGAGGGGGACCCGACTGATCCCCGGCTTTCGCAT-CCGAC-CCTTTGGCCGGCT
* * * * * *
15299988 GGGTGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCAAACGAAGTTCATTCCCAGTCTAA
835 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15300049 CCATATGGAGTTCATTGCCAATCTAAGA-TCGTACTGGACCGCGGGTTGCGGCCA-CACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCGGACCGAGGGTTGCGG-CAGCACATGCTG
* ** ** * *
15300112 GGCTCGAGCATGTGCTGGTGCTGCAATTATCTTCGTCGGGGCACCATCGTCGTAGCATCGCCGGA
64 GGCTCGGGCATGTGCTGGT-CCCCTTTTTTCTTCGTCGGGGCACCATC--CGGAGCATCG-CGGA
* * * * * **
15300177 GAACTTGTCCGGCGGCATTGGGGTTCCGACGATCGACGGGG-CCGGGGGGTATGCATACATGATG
125 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGTCGGGGGGGTGTGCGCACATGATG
* * * *
15300241 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
189 TGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15300306 ACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAA
* *
15300371 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
15300436 TGTACATGCCAACAAAAATACAAGGATCACGTC-AGCCATGTTTGGAGCCGAAATTCCTTCCGAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
15300500 AAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGT
448 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
15300565 CTTGCCATGAAACTTCACGTGAAGGCTTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAAT
513 CTTGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
15300630 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCT
577 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
15300695 TGCGCATCCCGTCTCTCTGGCC-AGCATAGTGCCCGCCTGCCCGCCCGCACGCTCGTTTCGTCGG
642 TGCGCATCCCGTCTCTCTAGCCGA-CGTAGTG-CCGCC-GCCCGCCTGCCCGCTCGTTTCGTCGG
* * * ** *
15300759 TTGGCTTAGGCATACGAAGTTCATTCGCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGTA
704 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCA
* * * * * ** * *
15300824 GGATCGGCAGCATGCAGAGGGGGACCCTACCGATCCTCGGCTTAAGCATCCCGCCCCTCTGGCCG
769 AGATCGGCAGCA-CCAGAGGGGGACCCGACTGATCCCCGGCTTTCGCAT-CCGACCCTTTGGCCG
* * * * *
15300889 ACTGAGCGCCCGCACGCTCGTTTCGTAGGTTCACTTAGGCATATGGAGTTCATAT-CCAATCTAA
832 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCCAGTCTAA
** *
15300953 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15301018 CTCAGTCATGTGTTGGTGCCGCTTTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGT-CCCCTTTTTTCTTCGTCGGGGCACCAT--CCGGAGCATCG-CGGAGA
* * * * * * * *
15301083 ACTTGACCGACGACATT-GGGTTCTGGCGATCAGGGGG-CCGGGGGGTGTGCGCCCATGATGTGC
127 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* *
15301146 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * * *
15301211 CTCCCTTAAAGAGCATTTGAAATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTTTGAAATG
257 CCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATG
* *
15301276 GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTGTTTT-
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTT-TTTTG
*
15301340 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15301405 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
451 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
15301470 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * *
15301535 TTGGCATGCAGAAATATGAGGATGTGCGTAAACCCACCTACCACCCTATTGATCCATGGCTTGCG
581 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15301600 CATCCCGTCTCTCTAGCCGGCATAGTG-C-CCG---GCC-GTCCACTCGTTTCATCGGTTGGCTT
646 CATCCCGTCTCTCTAGCCGACGTAGTGCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
15301659 AGGCATA-GGAGTTCATTCCCAATGTAAGATC-AGACCGGACCGAGGGTTGCAGCTA-CAAGATC
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCAAGGGTTGC-GGTAGCAAGATC
* * * * ** * *
15301721 GACAGCACGCAGAGGGGGACCTG-GTAGATCCCTGGCTTGAGCATCCTACCCCATTGGCCGGCTG
774 GGCAGCAC-CAGAGGGGGACCCGACT-GATCCCCGGCTTTCGCATCCGA-CCCTTTGGCCGGCTG
* * *
15301785 AGCGCTCGCACACTCGTTTCGTGGGTTGACTTA-GCTATACAGAGTTCATTCCCAGTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * * *
15301845 GCATATGGAGTTAATTCCCAGTCCAAGAACAGACCGGACCAAAGGTTGTGACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15301910 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGAGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTCCCCT-TTTTTCTTCGTCGGGGCACCAT--CCGGAGCATCG-CGGAGA
* ** * *
15301975 ACCTAACCGGCGGTGTTGGGGTTCCGGTC-ATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGT
127 ACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGG-TCGGGGGGGTGTGCGCACATGATGT
* * * *
15302039 GCGATGGGTACTGGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
** * * *
15302104 CACCCCCTTAAAAAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
* *
15302169 TGGGGACAC-TTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * * *
15302233 GTGCATACCAAAAAAAATACAAGGATCGCGTCTA-CAATTTTAGGGTCGAAACTCCTTTCGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
15302297 AATTTTAAAAAATCTTGAACC
450 AATTTTAAAAAATCTCGAACC
15302318 ACAAAAAAAA
Statistics
Matches: 5917, Mismatches: 702, Indels: 245
0.86 0.10 0.04
Matches are distributed among these distances:
883 31 0.01
885 354 0.06
886 77 0.01
887 359 0.06
888 164 0.03
889 367 0.06
890 457 0.08
891 231 0.04
892 316 0.05
893 242 0.04
894 171 0.03
895 153 0.03
896 183 0.03
897 144 0.02
898 45 0.01
899 8 0.00
900 90 0.02
901 1316 0.22
902 697 0.12
903 134 0.02
904 372 0.06
905 5 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTCCCCTTTTTTCTTCGTCGGGGCACCATCCGGAGCATCGCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTAGCCGACGTAGTGCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCAAGATCGGCAGCA
CCAGAGGGGGACCCGACTGATCCCCGGCTTTCGCATCCGACCCTTTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15299170 original size:26 final size:26
Alignment explanation
Indices: 15299134--15299186 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15299124 GTTGGCTTAG
*
15299134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15299160 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15299186 G
1 G
15299187 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15303216 original size:26 final size:26
Alignment explanation
Indices: 15303186--15303238 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15303176 GTTGACTTAG
*
15303186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15303212 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15303238 G
1 G
15303239 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15304568 original size:904 final size:891
Alignment explanation
Indices: 15302491--15307128 Score: 4070
Period size: 975 Copynumber: 5.1 Consensus size: 891
15302481 ATGATCGGGA
*
15302491 GGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
15302556 TCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAG
66 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* **
15302621 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCGCACTTCGAA-
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AAG
* * * *
15302685 TTTTTGGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
195 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGG
* * * * *
15302750 CAAAAACTCCTTCCGAAAATATTTTTAAAAAATCCCGAGCCGTAAAAAGTTTCAAAAATCATGAA
260 C-AAAACTACTTCC-AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
* *
15302815 AAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
323 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
15302880 TTACAAGCCATAAGAATGGCATTCGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
388 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCAC
* * *
15302945 CCTATCAATCCACTGCTTGTGCATCCCGTCTCTCTGGCTGGC---AT-----AGT--GCCCGCCC
453 CCTATCGATCCA-TGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAATGCCGCCGTGCGCCCGCCC
* * * *
15303000 GCCCGTTCGTTTCATCGGTTGGCTTAGCCATA-AGGAGTTCATTCCTAGTCTAAGATTGAACCAG
517 GCCCGCTCGTTTCGTCGGTTGGCTTAG-CATACA-GAGTTCATTCCCAGTCTAAGATTG-ACCGG
** * * * * *
15303064 ACTAAGGGTTGTGCTAGTAGGATCGACAGCATGCATAGAGGGACCCGACCGATCCCCAGCTTGCG
579 ACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCAGACCGATCCCCAGCTTGCG
* * * * *
15303129 CATCCCACCCCTCTGGCCGGTTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
644 CATCCCACCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTCCATGGGTTGACATAGGCATACGA
* *
15303194 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTT
709 AGCTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
*** * * *
15303259 ACGGCAACCCATGCTGAGCTCGAGCATATGCTGGTGCCACATTTTTCTTCGTCGGGGCACCCTCG
774 AAAACAACACATGCTGAGCTCGAGCATATGCTGGTGCCACATTTTTCTTCGCCGCGGCA------
* *
15303324 CCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGG
833 CC---GCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCGGGGG
* *
15303386 GGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
15303451 TCAAAGCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
66 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
15303516 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
15303581 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGG
196 TTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGG
* * * *
15303646 CCAAACTAATTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAA
260 CAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * * *
15303711 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGAACCATTATATGAATTT
325 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
15303776 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGTCTAAACCTGCCTACCACCC
390 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCC
*
15303841 TATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGTCCGACCGCCC
455 TATCGATCCATG-CTTGCGCATCCCGTCTCTCTGGCTGGCGTAATG-CCG-CCGT--G--CGCCC
* *
15303906 GCCCGACAGCCCACTCGTTTCGTCGGTTGGCTTACGCATACATAGTTCATTCCCAGTCTAAGATC
513 G-CC--C-GCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACAGAGTTCATTCCCAGTCTAAGAT-
* * * *
15303971 AGATCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAAAGGGGGACCTAG-CCGATCCCT
572 TGACCGGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACC-AGACCGATCCCC
* * * * * * *
15304035 GGCTTGTGCATCCCGCCTCTCTGGCTGGCTGAGCACCCGCACGCTCGTTCCGTGGGTTGACATAG
636 AGCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTCCATGGGTTGACATAG
* * *
15304100 GCATACGAAGCTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
701 GCATACGAAGCTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
15304165 CGAGGGTTAAAACAGCACATGCTGGGCTCGGGCA-AGTGCTGGTTCCGCATTTTTCTTCGCCGCG
766 CGAGGGTTAAAACAACACATGCTGAGCTCGAGCATA-TGCTGGTGCCACATTTTTCTTCGCCGCG
* * * *
15304229 GCA-C-CATCGCCAGAGAACCTGATCGACGGCGTTAGGGTTCCGGCGATCGAGGGGGCTGGGG
830 GCACCGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCG-GGGGGCGGGGG
* * *
15304290 GGTGTGCGCACATGATGTACGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
15304355 CCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
66 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
15304420 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
* * * * * *
15304485 TTTTAGCTTAATTTTTTTTTGCATGCCAAGAAAAATACAAGGATGGCATCTACCAAGTTTGGCGA
196 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGG-GG
* * *
15304550 CAAAACTACTTTCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTATGAAAA
260 CAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* *
15304615 ATAGAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTT
325 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** ** * *
15304680 ACAAGCCATAAAAATGAAATTGGCACACAAAAATATGAAGAGGTGCCTAAACCTACCTACCACCC
390 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCC
* * *
15304745 TATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGGCGTAGTGCCAGACCG-GTCGCCCGCC
455 TATCGATCCA-TGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAATGCC-G-CCGTG-CGCCCGCC
* *
15304809 TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATTGAGCTGG
516 CGCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACAGAGTTCATTCCCAGTCTAAGATTGA-CCGG
* * * * * * * *
15304873 ACCGAGGGTTGTGGCAGTAGGATCGATAGCACACAGAGGGGGACCCGGCTGAGCGCCCGCACGCT
579 ACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCAGACCGA--TCCC-CA-G--
* **** * ** * * *
15304938 CGTTTCATAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCGAAACCAACCTAC-CACCCT
638 C-TTGC--------GCA-T--C-C-CACCCCTCTG--GCCG-G-C-TAAGC-ACC--CGCACGC-
* * * * * * * ** * * ** * ***
15305002 ATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGACGT-AGTGCCC-GCCCGACCGCCCGC
680 -TCGTTCCATGGGTTG-ACAT--AGGCAT-AC--GAAG-C-TCA-TTCCCAGTCTAAGCATACG-
** * * * * ** *** * * *
15305064 CCGCTCGTTTCGTCAGTTGGCTTAGGCATGCAGAGTTCATTCCCA--GTCTAAGATCAGAC-C-G
734 AAGTTC-ATTC-CCAG-T--C-TAAG-AT-C-G-GACCGGACCGAGGGT-TAA-AACA-ACACAT
* * * * * * * ** ****
15305125 GACCGAGGGTTGTG-ACA-GCAGATGCTGGGC-TCGGGCATGTGCTGGTGCCATATTTTTCTTCA
786 G-CTGA-GCTCGAGCATATGCTGGTGC--CACATTTTTC-T-T-C----G----------C--C-
* * * * *
15305187 TTGGGGCACCATCACCAGAGCATCGCCAGAGAACCTAATCGACGGTATTGGGGTTCCGACGATCG
827 --GCGG------CACC---GCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATC-
15305252 GGGGGGACGGGGG
880 GGGGGG-CGGGGG
* * * *
15305265 GGTGTACGCCCATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
15305330 TCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
66 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * * * *
15305395 CCATTAAAGTGTCTGTAATGGGGATACCTTTTTGAAATGGTCACAAAATCTTATACACTTCGAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
* * *
15305460 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGC
196 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGG-
* * * * *
15305525 CAAAAATCCTTCCAAAAAAATTTTAAAAAATCTC-ACACCGCAAAATGTTTCAAAAATCGTGAAA
260 CAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGA-ACCGCAAAAAGTTTCAAAAATCATGAAA
* * * *
15305589 AATAGAAAACGGGTCATCTTGCAATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATT
324 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * * *
15305654 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAGCCCACCTACAACC
389 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACC
* *
15305719 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC---CG--ATG-TG--GTGCCTGCCCGCC
454 CTATCGATCCA-TGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAATGCCGCCGTG-C-GCCCGCC
* * * * * *
15305776 TGCCCACTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTTTAAGATCGAACCGG
516 CGCCCGCTCGTTTCGTCGGTTGGC-TTAGCATACAGAGTTCATTCCCAGTCTAAGATTG-ACCGG
* * ** * * ** * * * * *
15305841 ACAGATGGTTGCAGTAGCAAGATCGGTAGCATGCAGAGGGGGACCCGATCGATCCCC-GACTTAC
579 ACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCAGACCGATCCCCAG-CTTGC
* * * * * ** * *
15305905 GTATCCCACCCATCTAGCCGGCTGAGCGCCCTTACGCTCGTTTCATGGGTTGACTTAGGCATACG
643 GCATCCCACCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTCCATGGGTTGACATAGGCATACG
* * * * * * * *
15305970 GAGTTTATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGAATCGAGGGT
708 AAGCTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
**** * * * * **
15306035 TACGGTAACACAT-CTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTG-GGCCACCA
773 TAAAACAACACATGC-TGAGCTCGAGCATATGCTGGTGCCACATTTTTCTTCGCCGCGG-CA-C-
* ** * *
15306098 TCGCCGGAGCATCATTGGAGAACCTGACCGACGACATT-GAGGTTCC-ATCGATCAAGGGGGTC-
834 -CG-C--ATCGCCA---GAGAACCTGACCGACGGCATTAG-GGTTCCGA-CGATC--GGGGGGCG
**
15306160 AAGG
888 GGGG
* * * *
15306164 GGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTTA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * ** *
15306229 TCAAACCTCGAGAACTTACATGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAG
66 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * **
15306294 CCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
* * * * * *
15306359 TTTTAACTTAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAATTTGGGGC
196 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGG-
* * *
15306424 CAAAAC-AGCTTCCGAAAAAATTTTAAAAAATCTCGAACC-CAAAAAGTTTCAAAAATCGTGAAA
260 CAAAACTA-CTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
15306487 AATAGAAAACGAGTTGTCCTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATT
324 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
15306552 TACAAGCCATAAAAATGGCATT-G-ACGTGAAAAAATATGAAGATGTGCATAAACCCACCTACCA
389 TACAAGCCATAAAAATGGCATTGGCACGT--AGAAATATGAAGATGTGCCTAAACCTACCTACCA
* * * *
15306615 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-TGCCCGCCC
452 CCCTATCGATCCA-TGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAATG-CCGCCGTG--CGCCC
* * *
15306679 GCCCGACCACCTGCTCCTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
513 GCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTA-GCATACAGAGTTCATTCCCAGTCTAAGAT-
* * ** * * * ** * * *
15306744 GGATCGGACCGAGGGTTACGATAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCC
572 TGACCGGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCAGACCGATCCCCA
* * * ** * * *
15306809 GCTTGTGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGG
637 GCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTCCATGGGTTGACATAGG
* * * *
15306874 CATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
702 CATACGA-AGCTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
***** * * * * * * * ** *
15306938 CGAGGGTTGCGGTAGCCCATGCTGGGCTC-AGGCTTGTGCTGGTGTCATATTTTTCTTCATCGGG
766 CGAGGGTTAAAACAACACATGCTGAGCTCGA-GCATATGCTGGTGCCACATTTTTCTTCGCCGCG
* * ** *** * *
15307002 GCACCATCACCGAAGCATC-CCTGGAGAACCTAATTGGTAGCATTGGGGTTTCGACGATCGAGGG
830 G------CACC---GCATCGCC-AGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCG-GGG
15307066 GGTCGGGGG
884 GG-CGGGGG
* *
15307075 GGTGAGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
15307129 TCTCGTTTCG
Statistics
Matches: 3065, Mismatches: 481, Indels: 378
0.78 0.12 0.10
Matches are distributed among these distances:
893 2 0.00
894 205 0.07
895 275 0.09
896 78 0.03
897 11 0.00
898 171 0.06
899 280 0.09
900 37 0.01
901 9 0.00
902 2 0.00
903 76 0.02
904 440 0.14
905 2 0.00
906 10 0.00
907 3 0.00
908 2 0.00
909 8 0.00
910 289 0.09
911 61 0.02
912 1 0.00
913 6 0.00
914 264 0.09
915 11 0.00
916 3 0.00
917 3 0.00
918 1 0.00
919 2 0.00
920 3 0.00
921 13 0.00
922 13 0.00
923 10 0.00
924 14 0.00
925 5 0.00
926 4 0.00
927 4 0.00
929 3 0.00
930 10 0.00
931 10 0.00
932 11 0.00
933 9 0.00
934 3 0.00
936 4 0.00
937 4 0.00
938 4 0.00
939 14 0.00
940 11 0.00
941 17 0.01
942 11 0.00
943 3 0.00
944 2 0.00
945 1 0.00
946 2 0.00
948 6 0.00
949 1 0.00
950 1 0.00
952 1 0.00
953 2 0.00
958 1 0.00
960 1 0.00
961 3 0.00
962 1 0.00
963 4 0.00
965 2 0.00
966 5 0.00
967 45 0.01
968 57 0.02
969 3 0.00
970 3 0.00
972 2 0.00
974 46 0.02
975 444 0.14
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGGC
AAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCT
ATCGATCCATGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAATGCCGCCGTGCGCCCGCCCGCCC
GCTCGTTTCGTCGGTTGGCTTAGCATACAGAGTTCATTCCCAGTCTAAGATTGACCGGACCGAGG
GTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCAGACCGATCCCCAGCTTGCGCATCCCA
CCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTCCATGGGTTGACATAGGCATACGAAGCTCAT
TCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAAAACAA
CACATGCTGAGCTCGAGCATATGCTGGTGCCACATTTTTCTTCGCCGCGGCACCGCATCGCCAGA
GAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCGGGGG
Found at i:15305992 original size:26 final size:26
Alignment explanation
Indices: 15305963--15306015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15305953 GTTGACTTAG
*
15305963 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15305989 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15306015 G
1 G
15306016 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15306909 original size:26 final size:26
Alignment explanation
Indices: 15306873--15306925 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15306863 GTTGACTTAG
15306873 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15306899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15306925 G
1 G
15306926 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15307347 original size:26 final size:26
Alignment explanation
Indices: 15307311--15307363 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15307301 GTTCACTTAG
15307311 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15307337 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15307363 G
1 G
15307364 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15307516 original size:438 final size:438
Alignment explanation
Indices: 15306696--15307563 Score: 1132
Period size: 438 Copynumber: 2.0 Consensus size: 438
15306686 CACCTGCTCC
* * * * *
15306696 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
1 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTT
* * **
15306761 ACGATAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCCGCTTGTGCATCCCGCCC
66 ACAACAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCCGCTTGCACATCCCGCCC
* ** * * *
15306826 CTCTGGCCGGCTAAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
131 CTCTAGCAAGCTAAGCGCCCGCAAGCTCATTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCC
* * * * *
15306891 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCCC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAC
* * *
15306956 ATGCTGGGCTCAGGCTTGTGCTGGTGTCATATTTTTCTTCATCGGGGCACCATCACCGAAGCATC
261 AAGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCGAAGCATC
* * ** * * *
15307021 CCTGGAGAACCTAATTGGTAGCATTGGGGTTTCGACGATCGAGGGGGTCGGGGGGGTGAGCGCAC
326 CCTGAAAAACCTAACAGGGAGCATTGGGGTTTCGACGATCGAGGGGGCCGAGGGGGTGAGCGCAC
* *
15307086 ATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTCG
391 AGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTCG
* * * *
15307134 TTTCGTCGGTTGGCTTCGGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACTAAAGGTT
1 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTT
* * ** * *
15307199 GCAACAGCAAGATTGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCTGCCC
66 ACAACAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCCGCTTGCACATCCCGCCC
* * *
15307264 CTCTAGCAAGCTGAGCGCCCGCAAGCTCATTTTGTGGGTTCACTTAGGCATACGGAGTTCATTCC
131 CTCTAGCAAGCTAAGCGCCCGCAAGCTCATTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCC
* * * *
15307329 TAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAT
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAC
* * * * ** *
15307394 AAGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATC
261 AAGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCGAAGCATC
* * * *
15307459 ACC-GAAAAACCTGACAGGCGA-CATTGGGG-TTCAGGCGTTCG-GGGGGCCCGAGGGGGTGTGC
326 -CCTGAAAAACCTAACAGG-GAGCATTGGGGTTTC-GACGATCGAGGGGG-CCGAGGGGGTGAGC
15307520 GCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
387 GCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
15307564 GCCCCTATTC
Statistics
Matches: 366, Mismatches: 60, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
437 8 0.02
438 355 0.97
439 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (438 bp):
TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTT
ACAACAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCCGCTTGCACATCCCGCCC
CTCTAGCAAGCTAAGCGCCCGCAAGCTCATTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAC
AAGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCGAAGCATC
CCTGAAAAACCTAACAGGGAGCATTGGGGTTTCGACGATCGAGGGGGCCGAGGGGGTGAGCGCAC
AGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTCG
Found at i:15311714 original size:895 final size:892
Alignment explanation
Indices: 15309720--15312311 Score: 3287
Period size: 895 Copynumber: 2.9 Consensus size: 892
15309710 CAGTGTCGAG
* *
15309720 TTTAGCTG-AATTTTTCTTGTGCATGCTCAACCAATAAAATACAAGGATCACGTCAAAAACAAGG
1 TTTAGCTGAAATTTTT-TTGTGCATGC-CAA--AA-AAAATACAAGGATCACGTC--TACCAA-G
* * *
15309784 TCTGGGGCCAAAATTCCTTTCGAAAAAAAATTTTAAAAAAATCTACAAACCGCAAAAAGTTTCAA
58 TTTGGGGCCAAAACTCC-TTC-CAAAAAAATTTT-AAAAAATCT-CAAACCGCAAAAAGTTTC-A
* * * *
15309849 AAAATCGTGAAAAAAAAAGAAAACAAGTCGTTCTTG-CATGTCAACTTCAC--GAAGGCTTAA-G
118 AAAATCATG--AAAAATAGAAAACGAGTCG-TCTTGCCATG-AAACTTCACGTGAAGGCTTAAGG
* *
15309910 GACCATAG-ATG-AATTACAAGCCAT-AAAATAATCACTGGCATGCAGAAAATATGAA-AT-T-C
179 GACCATTGTATGAAATTACAAGCCATAAAAAT-ATCATTGGCATGCAG-AAATATGAAGATGTGC
* * * **
15309969 CGAAA-CCACCTA-CA-CCTATCGATCC-CGGC-AGCACATCTAC--CTCTCTGTACGCGTAGTG
242 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC-CCGTCTCTCTGGCCGCGTAGTG
* * *
15310027 CCCGCCTGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAG
306 CCCACC-GT-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
15310092 ATCAGACCGGATCGAGGATTGCGGCAGCAGGATTGGTAGCACACAAAGAGGGACTCGATCGATCC
369 ATCAGA-CGAACCAAGGATTGCGGCAGCAGGATTGGTAGCACACAAAG-GGGACCCGATCGATCC
** * *
15310157 CCGGCTTGCGCAT-CTCGCCCCTCTGGCCGGCT-AAGCGCCCATAGGCTCGTTTCGTGGGTTGAC
432 CCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAA-CGCCCGCACGCTCATTTCGTGGGTTGAC
** ** *
15310220 TTAGGCATGCGGAGTTCATTCCCAGTCTAAGCCCACGAAGTTCATTCCCAGTCTAAGATCATATC
495 TTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * *
15310285 AGACCAAAGGTTGTGGCAGTACATGCTAGGCTCGAGCATCTGCTAGTGTCACATTTTTTTTCGTC
559 AGACC-AAGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
15310350 GGGGCACCATCGCCGGAGCATCGCCAGAGAACTTGACCGGCAACATTGGGGTTCCGACGGTCGGA
623 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGG
* * * ** *
15310415 GGGGTCGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTAGAACTTAAATTGGCCCC
688 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GGCCTTATATTGGCCCC
*
15310480 TTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
752 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
15310545 CTACCAATAGCCATTAAAGTGTCTTAAATACGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
817 CTACCAATAGCCATTAAAGTGTCTGAAATACGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
15310610 CACTTCGAGTT
882 CACTTCGAGTT
* * *
15310621 TTTAGCT-AAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGTGC
1 TTTAGCTGAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
15310685 CAAAACTCCTTCCAAAAGAATTTTAAAAAATCCCAAACCGGAAAAATTTTCAAAAATCATGAAAA
66 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
*
15310750 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATT
** **
15310815 ACAAGCCATAAAAATATCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATGTACCACCC
196 ACAAGCCATAAAAATATCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
15310880 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACC-T-ACCCGCTCGT
261 TATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCG-CGTAGTGCCCACCGTCGCCCGCTCGT
* *
15310943 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGGTTG
325 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAACCAAGGATTG
* * * * *
15311008 CAGCAGCAAGATCGATAGCACACAAAGTGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCC
389 CGGCAGCAGGATTGGTAGCACACAAAG-GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCC
* *
15311073 TCTGGCCGGCTGAACGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
453 TCTGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCC
* * * *
15311138 AATCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCACGTGTTGCGGCAGCACA
518 AGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG-GTTGTGGCAGCACA
* *
15311203 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCG
581 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
* * *
15311268 CCGGAGAACCTGACCGACGACAATGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACAT
646 CCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
* *
15311333 GATGTGCGAAGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
711 GATGTGCGATGGGTGCTGGTACTT-GGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
15311398 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCCGATTAAAGTGT
775 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCC-ATTAAAGTGT
**
15311462 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
839 CTGAAATACGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
15311516 TTTAGCTGAAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
1 TTTAGCTGAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
*
15311581 C-AAAGTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
66 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
15311645 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATT
** *
15311710 ACAAGCCATAAAAATGGCATTGGGATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
196 ACAAGCCATAAAAATATCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
15311775 TATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCCTAGTCTCGCCAGCCTGTCCGCCCG
261 TATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCC-GCGTAGT-GC-CCA-CC-GT-CGCCCG
* * * * * ** * *
15311840 CTCCTTTCATCGGTTGGCTTAGGCATACAGAGTTAATTCCAAAACTAAGATTAGACTGAACCCAG
320 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAACCAAG
** * * ** * * * ***
15311905 TTTTACGGTAGCAGGATTGGTAGCATGCAGAAGGGGACCC-AGCCGATCCTCGGCATAAACATCC
384 GATTGCGGCAGCAGGATTGGTAGCACACA-AAGGGGACCCGA-TCGATCCCCGGCTTGCGCATCC
** * * * * *
15311969 CACCCCTCTGGCCGACTGAACCCCCGCACACTCATTTCTTGGGTTGACTTAGGCATGCAGAGTTC
447 TGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTC
* * *
15312034 ATTCCCTGCCTAAGCATACGGTGTTCATTCCCAGTCTAAGATCGGACC-GAACCAAGAGTTGTGG
512 ATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCAAG-GTTGTGG
* * * *
15312098 TAGCACATGCTGGGCTC-GGCATGCGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGG
574 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * *
15312162 AGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTG
639 AGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
*
15312227 CGTACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAC
704 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCC-TTATATTGGCCCCCTATCCCTCATCAAAC
*
15312292 CTCAAGAACTCACACCCCCT
768 CTCGAGAACTCACACCCCCT
15312312 ATCCTTTCGA
Statistics
Matches: 1476, Mismatches: 177, Indels: 76
0.85 0.10 0.04
Matches are distributed among these distances:
885 13 0.01
886 21 0.01
887 10 0.01
888 17 0.01
889 28 0.02
890 34 0.02
891 16 0.01
892 8 0.01
893 19 0.01
894 11 0.01
895 743 0.50
896 84 0.06
897 11 0.01
898 11 0.01
899 15 0.01
900 15 0.01
901 194 0.13
902 223 0.15
903 3 0.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (892 bp):
TTTAGCTGAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATT
ACAAGCCATAAAAATATCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGCGTAGTGCCCACCGTCGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAACCAAGGATTGCG
GCAGCAGGATTGGTAGCACACAAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCT
GGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGT
CTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGTTGTGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
ACGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
Done.