Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 84 of 131
Found at i:15313548 original size:26 final size:26
Alignment explanation
Indices: 15313512--15313564 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15313502 GTGGACTTAG
15313512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15313538 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15313564 G
1 G
15313565 ATTGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15316146 original size:26 final size:26
Alignment explanation
Indices: 15316109--15316161 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15316099 GTTGACTTAG
15316109 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15316135 GCATAC-GAAGTTCATTTCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15316161 G
1 G
15316162 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15317033 original size:26 final size:26
Alignment explanation
Indices: 15317003--15317055 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15316993 GTTGTCTTAG
*
15317003 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15317029 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15317055 G
1 G
15317056 ATCGGACCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15317926 original size:26 final size:26
Alignment explanation
Indices: 15317890--15317939 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15317880 GACTTAGGAG
15317890 TACGGAGTTCATTC-CTAGTCTAAGCA
1 TACGGAGTTCATTCTC-AGTCTAAGCA
15317916 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCTCAGTCTAAG
15317940 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCTCAGTCTAAGCA
Found at i:15318820 original size:26 final size:26
Alignment explanation
Indices: 15318784--15318836 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15318774 GTTGACTTAG
* *
15318784 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
15318810 GCATACGGAGTTAATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
15318836 G
1 G
15318837 ATCAGGCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:15320389 original size:904 final size:901
Alignment explanation
Indices: 15315938--15332942 Score: 21004
Period size: 897 Copynumber: 19.0 Consensus size: 901
15315928 CGTCTCTTTG
* * * * * *
15315938 GTCGATTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATTGGACCGAACCG-GGGTTAC-A
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * *
15316001 GCAGCAGGATCAGCAACACGCAGAGGGGGACCCGACCGATCCCCGACTTGGGCATCCTGCCACTC
66 -CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
15316066 TGGCCGGCTGAGC-ACCGCACGCTTGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
15316130 TCTAAGCATACGAAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTGGCGGCAGCACATA
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATG
* * * * * * * **
15316195 CTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTATTCGTCGGGGTACCATCGCTGGAGCACCAAC
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGCC
** * * *
15316260 AAAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATG
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
* * * *
15316325 ATGTGTGATGGGTGCTGGTACCTGGCCCTTATATTAGCCCCCTATCCATCATCAAACCTCGAGAA
387 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
15316390 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
15316455 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
15316520 TTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCG
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * ** ** *
15316585 AAAAAATTTTAAAAAATCTCAAACCCCAAAAAGTTTCAAAAATCGTGAAATGTACAAAACGAGTC
647 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
15316650 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
15316715 TGGCATTGGCAAGCAGAAATATGAAGATGTGCCCAAACCCACTTACCACCCTATCGATCCACGGC
777 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
15316780 TTGCACATCTCGTCTCTCTGGCCGACGTAGTGCCCG--T------CCGCCCGCTCGTTCC
842 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * * * * * **
15316832 ATCGGTTGGCATAGGCATACAGAGTTCATTCCAAGTCTAAGAACAGACCGAATGGAGGGTTGC-A
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * ** * * * *
15316896 GTAGTAGGATCGATAGCACGCAGAGGGGGACCCGGCCAATCCCCAGCTTGCGCAT-CC-CTCCTC
66 -CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
15316959 TGGCCGGCTGAGTGCCCGCACGTTCATTTCGTGGGTTGTCTTAGGCATATGGAGTTCATTCCCAG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* ** *
15317024 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCTGCAGCACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCACATG
* * * * * *
15317089 CTGGGCTCGGGCATGTGCTGGTGCCACATTATTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGCC
* *
15317154 GAAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGA
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
**
15317219 TGTGCGATGGGTGCTGGTACTTGGCCC------T-------TATCCCTCATCAAAAATAC-AGAA
388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAGAA
** * *
15317270 CTCACACTTCCTTAAAGAGCATCTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
15317335 GAAATGTGGACAATTTTTTCAAATGGTCCCAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
15317400 TTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGAGACCAAAACT-CTGTCC
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCC
* * * *
15317464 -AAAAAATTTTAAAAATTCCCGAACTC-CAAAAAGTTTCAAAAATCGTGAAATATACAAAACGAG
646 GAAAAAATTTTAAAAAATCCCGAAC-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
15317527 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATGAA
710 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
15317592 AATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-G
775 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
15317656 GCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG-CCGACCT----GCCCGTCCGCTCGTTTC
840 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCTGCCCGCCCGCCCGCTCGTTTC
* * ** *
15317714 GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* *
15317779 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCT
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
15317844 GGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG-AGTACGGAGTTCATTCCTAG
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-TACGGAGTTCATTCCCAG
* ** * *
15317908 TCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGTAGCACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATG
* * * ** * *
15317973 CTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGCC
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCACCGGGCACCATCGCCGGAGCATCGCC
** *** * *
15318038 GGAGAACCTGACCAACGGCATTGCACTTCCGGCGATC-GGGGGGCCGAGGGGGTGTGCACACATG
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATG
*
15318102 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAA
387 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
15318167 CTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* ** **
15318232 GAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTAAGAGTTTTGGGCTGAATTT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* **
15318297 TTTTATGCATGCCAACAAAAGCACAAGGATCACGTCTACCAA------GGCCAAAACTCCTTCCG
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
15318356 AAAAAATTTTAAAAAATCTCGAACCGTAAAATGTTTCAAAAATCGTGAAAAATTGAAAACGAGTC
647 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
15318421 GTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
15318486 TGGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
777 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
15318551 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGTCTGTCCGCTCGTTTT
842 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * * * * *
15318611 GTCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATCAGATCGGGCCAACGGTTAC-A
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * * * * **
15318675 GCAGCAAGATAGGTAGCACCCAGAGGGGGACCTGGCTGATCCCCGGCTTGCACATCCTTCCCCTC
66 -CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
15318740 TGGTCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * ** * **
15318805 TCTAAGCATACGGAGTTAATTCCCAATCTAAGATCAGGCCAAACCGAGGGTTACGATAGCACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATG
* * * * ** * * *
15318870 CTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCCTCATCGGGGCACCATCGTTGGAGTATCACT
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CCGGGCACCATCGCCGGAGCATCGCC
** * *
15318935 GGAGAACCTGACCGGTAGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGTGTGCGCACAT-A
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* *
15318999 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTGTCCCTCATCAAACCTCGAGAAC
388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
15319063 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTA
453 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15319128 AAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
518 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
15319193 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTATCTAGTTTTGGGCCAAAAATCCATCCGA
583 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
15319258 AAAAATTTTAAAAAATCCTGAACCGCAAAAATTTTCAAAAATCGTGAAAAATAAAAAATGAGTCG
648 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15319323 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-CGTAGCCATAAAAA
713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAA
* * * *
15319387 TGGCATTGGCACGTAGAAATATAAAGATTTGCCTAAACCCACCTACCACCTTATCGATCCACGGC
777 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
15319452 TTGCGCATCCCATCTCTCTGGCCGACATAGTGCCCACCTGCCCGCCCGCCCGCTCGTTTC
842 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * *
15319512 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGA
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
** * *
15319577 CAGCAGGATCGGTGGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
15319642 GGCCGGCTGAGCGCCTGCACTCTCGTCTCATGGGTTGACTTAGGTATACAGAGTTCATTCCCAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * **
15319707 CTAAGCATGCGAAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCAACAGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCACATGC
* * ** ** *
15319772 TGGGCTCGAGCATGTGCTAGTGCCATATTTTTCTTCACCGGGCACCATCGTTGGAGCATCGTCGG
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCACCATCGCCGGAGCATCGCCGG
* * *
15319837 AGAACCTGACCGGCGACATTGGGGTTCCGGCGATTGGGGGGGCCCGGGGGGTGTGCGCACATGAT
325 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGAT
* * * * * *
15319902 GTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCAAGCATT
389 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15319967 TACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGA
454 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * *
15320032 AATGGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTT
519 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
15320097 TTGTGCATGCCAAAAAAAAAAACAAGGATAACATCTACCAAGTTTGGGGCCAAAACTGCTTCCGA
584 TTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
15320162 AAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
648 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
15320227 TCTTGCCATGAAACTTCACGTGAAGCCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
15320292 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
778 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
15320357 TGCGCATCTCGTCTCTCTGGCCAACGTA------G--TGCCCGCCCGTCCACTCGTTTC
843 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * ** * *
15320408 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAAAAGGTTGCAA
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * * * *
15320473 CAGCAGTATCGACAACACGCAGAGGGGAACCC-AGCTGATCCCCAGCTTGCACATCCCACCCCTC
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
15320537 TGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGAAGTTCGTTCCCAG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
15320602 TCCAAGCATACAGAGTTCATTCCCAGTATAAGATCGGACCAGACCGAGGGTTGCGGTAACACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCACATG
* ***
15320667 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTGGGGGCACCATCGCCGGAGCATCGCC
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGCC
*** * * * *
15320732 GGAGAACCTGACTAACGGCATTGGGTTTTCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATG
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATG
* * * * * *
15320797 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGTCCTCTATTCTTCATCAAACCTTGAGAA
387 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
15320862 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * **
15320927 GATATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATTTGAATTT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
15320992 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA-AAATGTTTGGGGCCAAAACTACTTCC
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCC
* * * *
15321056 AAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGT
646 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
15321121 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAA
711 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
15321186 ATGGCATTGGCACGCAGAAATATGAAGATGTG-CTAAACCCACCTACCATCTTATCGATCCACGG
776 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
15321250 CTTGAGCATCCCATCTCTCTGGCCGGCGTAGTGCCTGCCCGACCGCCCGACCGCTCGTTT-
841 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * * ** *
15321310 ATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATGGAGGATTGCTG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-G
** * * * * * * **
15321375 -CAGCAGGATCAACGGCACGTAGAGGGGGACCTGATCGATCCCCGACTTACGCATTTCGCCCCTC
65 ACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * * *
15321439 TTGCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTCACTTAGGCATATGGAGTTCATTCCCAA
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* ** * * *
15321504 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGTAGCACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCGGACCGAGGGTTGCGGCAGCACATG
* * * *
15321569 CTGGGCTCGGGCATGTGCTGGTGCAGCTTTTTTCTTCGCCAGGGCA-C-T---------ATCGTC
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGCACCATCGCCGGAGCATCGCC
* * * ** ** * * ** *
15321623 AGAGAACCTAACCGGCGGCATTGGAGTTTTGGTGGTCGGGAGGGCCGTAGGGTGTGCGCATATGA
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
**
15321688 TGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
15321753 TCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCT-
453 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
15321817 AAATTGGGGACACTTTTTTGAAATGGTCACAAAATCTTATGCACTTTGAGTTTTTA-CTTGAATT
518 AAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATT
* * * ** *
15321881 TTTTTGTGCATGCCAAAAAAAATACAAGGATCGCGTCTA-AAATGTTTGGGAACAAAACTACTTC
581 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTC
* * * **
15321945 CAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAGAATAGAAAATAAG
645 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
15322010 TGGACTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
710 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
15322075 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CC-CCT-CTACCCTATCGATCTACG
775 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * **
15322137 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GACCGCCCGCCTACTCGTTTC
840 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * * **
15322195 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTCAC-A
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * ** * * * *
15322259 GTAGTAGGATTGGCAGCATGTAGA-GGGGACCCGGTCGATCCCTGACTTGCGCTTCTCGCCCCTC
66 -CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * * * *
15322323 TTGCTGGCTGAACTCCCGTAAGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAA
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
15322388 TCTAAGCATACAGAGTTCGTTCCCAGTCTAAAATCGGACCAGATCGAGGGTTGCGGTAGCACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCACATG
* * * *
15322453 CTGGGCTCGAGCATGTGCTGGTGCGGCTTTTTTCTTCGCCAGGGCACCAT---C---G--T---C
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGCACCATCGCCGGAGCATCGCC
* * * * ** * * * *
15322507 GGAGAACCTGACCGCCGGTATTGGAGTTCTGGTGGTCGGGGGGGCCGAGGGGTGTGCACATATGA
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * *
15322572 TGTGCGATGGGTGCTCGTACTTGGCCATTATATTGGCCCCCTATACCTCATCAAACCTCGAGAAC
388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
15322637 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
453 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15322701 AAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTT
518 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTT
* * *
15322765 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGAT-CATCC
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCC
* * *
15322829 GAAAAAATTTTAAAAAGTCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
646 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
15322894 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGG-CCATTCTATGAATTTACAAGCCATAAC
711 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAA
* * *
15322958 AATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACG
775 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * **
15323023 GCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCCCATCCGCCCGCTCGTTTC
840 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * * * * *
15323085 GTCAGTTAGCTTAGGCATACGGAGTTCAATCCTATTCTAAGATCGGACCAGACCGAGGGTTGCGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * * * *
15323150 CAGCAAGATCGACAACATGCAGAGGGGGACACGTCCGATCCCCGGCTTGTGCATCCCGCCCTTCT
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * ** *
15323215 GGCCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCACATAGAGTTCATTCCTAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
15323280 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATAC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * * * *
15323345 TGGGCTCAGGCATGTGCTGGTGTCACGTTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCA
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGCACCATCGCCGGAGCATCGCCG
* * * *
15323410 GAGAACCTGGCCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACTTGAT
324 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * * * *
15323475 GTGCGATGAGTGTTGGTACTTGGCCCTTATCTTGGCCTCCTATCCATCATCAAACCTCAAGAACT
389 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15323540 CACAGCCCCTTGAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
454 CACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15323605 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATT
518 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
15323670 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
583 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
15323735 AAAAATTGTAAAAAATCTCAAACTG-AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
648 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * **
15323799 TCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGAAATAAAAAT
713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15323864 GGCATTGGCATGTAGAAATATGAAGATGTTCCCAAACCCACCTACCACCCTATCGATCCACGACT
778 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
15323929 TGCGTATCCCGTCTCTCTCGCCGATGTAGTGCCCG-CT---TGCCCGCCC-CTCGTTTC
843 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * *
15323983 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGCCA
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * *
15324048 CAGCACGATCGGCAGCATGCATAGGGGGACTCGACCAATCCCCGGCTTGCGCATCTCGCCCCTCT
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * ** * *
15324113 GGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATAGAGTTGATTACCAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * **
15324178 CTAAGCATACAGAGCTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTGGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATGC
* *
15324243 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCC---G-A------
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGCACCATCGCCGGAGCATCGCCG
* * * *
15324298 -AGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTACGCACATGA
324 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGA
* * *
15324362 TGTGCGATGGGTGTTGGTACTTGGCCCTTATATTAGG-CCCCTATCCATCATCAAACCTTGAGAA
388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAA
*
15324426 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
15324491 AAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATAT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
15324556 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
15324621 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATC
647 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
15324686 CTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
15324751 TGGCATTGGAACACACAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
777 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** *
15324816 TTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCCCGTTTC
842 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * ** *
15324876 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGCACACCAGACCGAGGGTTATG-
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-T-TGC
* * * * * ** * * *
15324940 GGCAGCAGGATTGGCAGCGCGTAGAGGGGGACGCGACCGATCCCCGAATTGGGCATCCTGCCGCT
64 GACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * ** ** * *
15325005 CTGGCCTGCTGAGCTCCCGCACTTTCGTTTTATGGGTTGACTTAGGAATACGGAGTCCATTCCCA
129 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
15325070 ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACAT
194 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACAT
* * * * * *
15325135 ACTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCATCCGGGCACCATCGTCGTAGCAACGC
258 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CCGGGCACCATCGCCGGAGCATCGC
* * * *
15325200 CGGAGAACCTGACCGACGACAGTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATG
322 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
*
15325265 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
387 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
15325330 CTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
15325395 GAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * **
15325460 TTTTGTGCATGCCAACAAAAATACAACGATCACGTCTACTATGTTTGGGGCCAAAACTCCTTATG
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * * * *
15325525 AAAAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTT
647 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
15325590 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTCACAAGCCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
15325655 AGGCATTGGCATGTAGAAAGTATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCGCTG
777 TGGCATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
15325720 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGTCTGCCCGCCCGCTCGTTTC
841 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * * * * *
15325781 GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCTGACCAGATCGAGGGTTGTGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * *
15325846 CAGCAGGATTGACAGCACACAGAGGGGGTCCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
15325911 GGTCGGCTGAACGCCCGCACGCTCGTATCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
15325976 GTAAGCATACGAACTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGC-ACAGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATGC
* * ***
15326040 TAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCAT---C---GCA-----G
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGCCG
** * * *
15326094 GAGAAATTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGTGTGCACACATG
324 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C-CGGGGGGTGTGCGCACATG
** * * ** *
15326159 ATGTATGATAGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGGA
387 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
15326224 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
15326288 GAAATGGGGACATTTTTTTCAAATGGTCGCAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
15326353 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
15326418 AAAAAATTTTTAAAAATCTCGAACCGTAAAATGTTTCAAAAATCCTGAAAAATAGAAAACGAGTC
647 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
15326483 GTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
15326548 TGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
777 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
15326613 GTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCGCCCGCCCGCTCGCACGCTCGTTTC
842 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCG--C-C-CGCTCGTTTC
* * * * * *
15326677 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATTGGACCAGACTGAGGGTTACGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * ** * **
15326742 CAGCAGGATCAGTAGCACACAGAGGGGGACCCGGCTAATCCCCGGCTTGTGCATCTTGCCCCTCT
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** * * * * ** * *
15326807 GGTTGGTTGAACGCCCGTACTCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCAAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
15326872 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATGC
* * *
15326937 TGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCACCGGAGCACCATCGTCGGAGCATCGCCG
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG-GCACCATCGCCGGAGCATCGCCG
* ** *
15327002 GAGAACCTGACCGGTGGCATTGGGGTTCCGGGGATCGGGGGGCCCGGGGGGTGTGCGCACATGAT
324 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* ** * *
15327067 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGGGCCCTATCGCTCATCAAACCTTGAGAACT
389 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
15327132 CACACCCCCTTAAAGAGCATTTCAGATTTTACCGGTTTGCTAG-CAGTA-CCGTTAAAGTGTTTG
454 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTG
* * *
15327195 AAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGATTTTT
518 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* **
15327260 TTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGATCCAAAACTCCTTCCGA
583 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
15327325 AAAAATTTTAAAAAATCCCAAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
648 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
15327390 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
15327455 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCT
778 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
15327520 TGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTC
843 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * *
15327579 GTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGGGGGTT----
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * *
15327640 --GC--GA----CAGCACGCAGAGGGTGACACCG-CTGATCCCCGGCTTGCGCATCCCGCCCTTC
66 CAGCAGGATCGGCAGCACGCAGAGGGGGAC-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
** * * * * * * *
15327696 AAGCCGACTGAGCGCCGGCACGTTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCGTTCTCAG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
** * *
15327761 TCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCACATG
* * * **
15327826 CTGGGCTCGGGCATGTGCTAGTGCTGTATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATCGCC
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG-GCACCATCGCCGGAGCATCGCC
* * * * * * * *
15327891 AGAGAACCT-AGCCGGCGGCATTGGGGTTCTGACAATCGGGGGGGTCAGGGTGTGTGCGAACAAG
323 GGAGAACCTGA-CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
15327955 ATGTACGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
387 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
15328020 CTCACACCACCTCAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
15328085 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
15328150 TTTTGTGCATGCCAACAAAAATACAAGGATGATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
15328215 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT-AAAAATCATGAAAAACAGAAAACGAGTC
647 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
15328279 GTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAATCCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
15328344 TAGCATTGACATGTAGAAATATAAAGAAAATAGCATTGACATGTAGAAATATAAAGATGTGCCTA
777 T-G----G-C--------AT-T---G------GC----AC--GCAGAAATATGAAGATGTGCCTA
* * * *
15328409 AACCCACCTACCATCCTATCGATACACGGCTCGCGCATCCCGTGTCTCTGGCCGACGTAGTGCCC
812 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
15328474 GCCTGCCCACCCACCCACTCTTTTC
877 GCCTGCCCGCCCGCCCGCTCGTTTC
* *
15328499 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGC-A
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * *
15328563 GCAGCAGGATCAGTAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTGCCCCTC
66 -CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
*
15328628 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
15328693 TCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGCGACAGCACA--
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATG
* *
15328756 ------T---GC---TGC---TGCCGCATTTTTCTTCACCGAAGCACCATCGCTGGAGCATCGCC
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG-GGCACCATCGCCGGAGCATCGCC
* * * *
15328806 GAAAAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGTGGGGGTGTGCGCACAT
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGTGTGCGCACAT
* * * *
15328871 GATGTGTGATGGTTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
386 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
15328936 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
451 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
15329001 TGAAATGGGGACACTTTTTTC-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
516 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * * *
15329065 TTATTATACATGCCAA-AAAAATGCAAGGAT-ACGTGTACCAAGTTTGGGGCCGAAACTCCTTCT
581 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
15329128 GAAAAAATTTTAAAAAATCTCAAACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGT
646 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
15329193 CGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAA
711 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
15329258 ATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCTACGG
776 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
15329323 CTTGCGCATCCCGTCTCTCTGGCCGGCGTTGTG--C-CC-GCCCGCCCGTCTGCTCGTTTC
841 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * ** * *
15329380 GTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATTGAACCAAGGGTTGCGA
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * *
15329445 C-GCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATCCTCGGCTTGCGCATCCTGCCCCTCT
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** * * * * *
15329509 GGCCGGCTGAATGCCCGTACGCTCATTTCGT--G-AGACTTAGGCATACAGAGTTCATTCCTAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
15329571 CTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGAACTGAACCAAGGGTTGGGGCAGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCACATGC
* ** * * *
15329636 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGTCG
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCACCGGGCACCATCGCCGGAGCATCGCCG
* * ** * * * *
15329701 GAGAACCTGATCGACGATAATGGGATTCCGACGATCGAGGGGGCCGGGGGGGTGTGCACACATGA
324 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGA
* ** * * *
15329766 TGTGCGATGGGTGCTGATTTTTGGCCCTTATATTGGCCCCCTATGCCTCATCAATCCTTGAGAAC
388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
** * *
15329831 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAACTTTGCTGCCAATAGCCATTAAAGTGTTTG
453 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
15329896 AAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTGGCTGAATTTT
518 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * *
15329961 TTTTATGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
582 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
15330026 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
647 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
15330091 GTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGTCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
15330156 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGC
777 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
15330221 TTGCGCATCCCGTCTCTCTGGCCGGCGTTGTG--C-CC-GCCCGCCCGTCCACTCGTTTC
842 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * * * * *
15330277 GTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATTGGATCGAACCAAGGGTTGCAG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-G
* * *
15330342 TACA--A-GATCGGCAGCACGTAGAGGGGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCT
65 -ACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* ** * * *
15330404 CTGGCCGACTGAATGCCCGTACGCTCATTTCGT-GG--GACTTAGGCATACGGAGTTCATTCCTA
129 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
15330466 GTCTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAAACCGGACCAAGGGTTGGGGCAGCACAT
194 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCACAT
* **
15330531 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCAT
258 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGCACCATCGCCGGAGCATCGC
* * * *
15330596 CGAAGAACCTGATCGGCGGTAATGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACAT
322 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACAT
** * * *
15330660 GATGTGCGATGGGTGCTGGTTTTTGACCCTTATATTGGCCCCCTATGCCTCATCAATCCTCGAGA
386 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
15330725 ACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCAATTAAAGTGTC
451 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
15330790 TGAAATTGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATT
516 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
*
15330855 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTC
580 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * * *
15330920 TGAAAAAATTTTAAAAAATTCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
645 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
15330985 TCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAA
710 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
15331050 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
775 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
15331115 GCTTGCGCATCCCGTCTCTCTGG-C--CG--GTG-CAG--TGCTCG--CG--CGCTCGTTCC
840 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
* * * * *** ** *
15331165 GTCGGTTGGCTTAGGCATACGGATTTCATTCTCAGTCTAAGATTGAATTAGACCGAGGGTTATGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * *
15331230 CAGCAGGATCGGCAGCACGCAGAGAGGGTCCC-AGTCGATCCCCGACTTACGCATCCCGCCCATC
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
15331294 TGGTCGGTTGAACGCCCGCACGCTCGTATCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
15331359 TGTAAGCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-ACAGCACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATG
* * ***
15331423 CTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCAT---C---GCA-----
259 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGCC
** * * * * * *
15331477 GGAGAAATTGACCAGCGACACTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCGCACATGA
323 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * * * **
15331542 TGTACGATAGGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATCCCTCATCAAACCTAAAGAAC
388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
15331607 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
453 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15331671 AAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTT
518 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
15331736 TTTGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCCAA
583 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * ** *
15331801 AAAAATTTTTATAATTCCCAAACCCCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCG
648 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15331866 TCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15331931 GGCATTGGCAGGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCG
778 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
15331996 TGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGTCCGCCCGCACC-CTCATTTT
843 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-GCC-T--GCCCGCCCGC-CCGCTCGTTTC
* * * * * * * *
15332059 GTCGGTTGGCTTAGTCATAAGGGGTTCATTCCCA-TCTAATATTGGACCAGACTGAGGGTTGCGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * *** * ** * *
15332123 TAGCAGGATCGGTAGCACACAGAGGGGGACTCGGTTGATCCCCGACTTATGCATCTCGCCCCTTT
66 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * *
15332188 GGCTGGTTGAGCGCCCCCACTCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
** * * * *
15332253 CTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCACATGC
* * ** *** **
15332318 TAGGCTCGGACATGTGCTGGTGCCAAATTTTTCTTCACCGGGGCACCATCATTGGAGCATCATCG
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGCACCATCGCCGGAGCATCGCCG
* * * *
15332383 GAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGTACATGAT
324 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * *
15332448 GTGCGAT-GGTGGTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGGGAACT
389 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15332512 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCCTTAAAGTGTCTAA
454 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
15332576 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTT
519 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
15332641 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGACAAAACTCTTTTCGAT
584 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** *
15332706 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
649 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15332771 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
714 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15332836 GCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
779 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
15332901 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
844 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCG
15332943 TTGGTTTGTT
Statistics
Matches: 14084, Mismatches: 1733, Indels: 582
0.86 0.11 0.04
Matches are distributed among these distances:
877 82 0.01
878 297 0.02
879 289 0.02
880 383 0.03
881 80 0.01
882 112 0.01
883 326 0.02
884 592 0.04
885 159 0.01
886 49 0.00
887 241 0.02
888 380 0.03
889 83 0.01
890 947 0.07
891 469 0.03
892 386 0.03
893 794 0.06
894 729 0.05
895 317 0.02
896 1230 0.09
897 1412 0.10
898 289 0.02
899 9 0.00
900 71 0.01
901 513 0.04
902 464 0.03
903 421 0.03
904 1389 0.10
905 281 0.02
906 434 0.03
907 40 0.00
908 39 0.00
909 1 0.00
910 1 0.00
914 66 0.00
915 178 0.01
916 56 0.00
917 155 0.01
918 5 0.00
920 151 0.01
921 3 0.00
924 1 0.00
926 2 0.00
928 2 0.00
931 3 0.00
932 153 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCACCATCGCCGGAGCATCGCCGGA
GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTC
Found at i:15322403 original size:26 final size:26
Alignment explanation
Indices: 15322367--15322418 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15322357 ATTGACTTAG
*
15322367 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
15322393 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15322419 AATCGGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15325091 original size:26 final size:26
Alignment explanation
Indices: 15325052--15325102 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15325042 TGACTTAGGA
15325052 ATACGGAGTCCATTCCCAATCTAAGC
1 ATACGGAGTCCATTCCCAATCTAAGC
* *
15325078 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTCCATTCCCAATCTAAG
15325103 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGGAGTCCATTCCCAATCTAAGC
Found at i:15326006 original size:26 final size:26
Alignment explanation
Indices: 15325954--15326006 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15325944 GTTAACTTAG
* * * *
15325954 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAACTTCATTCCCAATCTAA
15325980 GCATACGAACTTCATTCCCAATCTAA
1 GCATACGAACTTCATTCCCAATCTAA
15326006 G
1 G
15326007 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAATCTAA
Found at i:15326886 original size:26 final size:26
Alignment explanation
Indices: 15326850--15326902 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15326840 GTTGACTTAG
15326850 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
15326876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
15326902 G
1 G
15326903 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:15327770 original size:26 final size:26
Alignment explanation
Indices: 15327740--15327792 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15327730 GTTGACTTAG
* *
15327740 GCATACGA-AGTTCGTTCTCAGTCTAA
1 GCATA-GAGAGTTCATTCCCAGTCTAA
*
15327766 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
15327792 G
1 G
15327793 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:15328374 original size:30 final size:30
Alignment explanation
Indices: 15328340--15328400 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
15328330 ACAATCCATA
15328340 AAAATAGCATTGACATGTAGAAATATAAAG
1 AAAATAGCATTGACATGTAGAAATATAAAG
15328370 AAAATAGCATTGACATGTAGAAATATAAAG
1 AAAATAGCATTGACATGTAGAAATATAAAG
15328400 A
1 A
15328401 TGTGCCTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.54, C:0.07, G:0.16, T:0.23
Consensus pattern (30 bp):
AAAATAGCATTGACATGTAGAAATATAAAG
Found at i:15328708 original size:26 final size:26
Alignment explanation
Indices: 15328672--15328722 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15328662 GTTGACTTAG
15328672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15328698 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15328723 GGATCAGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15329576 original size:26 final size:26
Alignment explanation
Indices: 15329546--15329599 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
15329536 TCGTGAGACT
15329546 TAGGCATACAGAGTTCATTC-CTAGTC
1 TAGGCATACAGAGTTCATTCTC-AGTC
*
15329572 TAGGCATACGGAGTTCATTCTCAGTC
1 TAGGCATACAGAGTTCATTCTCAGTC
15329598 TA
1 TA
15329600 AGATCGAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCTCAGTC
Found at i:15330472 original size:26 final size:26
Alignment explanation
Indices: 15330443--15330496 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
15330433 TCGTGGGACT
*
15330443 TAGGCATACGGAGTTCATTCCTAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15330469 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15330495 TA
1 TA
15330497 AAATCAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:15331367 original size:26 final size:26
Alignment explanation
Indices: 15331338--15331390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15331328 GTTGACTTAG
* *
15331338 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGACTTCATTCCCAGTCTAA
15331364 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
15331390 G
1 G
15331391 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:15332268 original size:26 final size:26
Alignment explanation
Indices: 15332231--15332283 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15332221 GTTGACTTAG
*
15332231 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15332257 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15332283 G
1 G
15332284 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15333949 original size:26 final size:26
Alignment explanation
Indices: 15333913--15333965 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15333903 GTTAACTTAG
* *
15333913 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15333939 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15333965 G
1 G
15333966 ATTGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15334441 original size:26 final size:26
Alignment explanation
Indices: 15334388--15334444 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
15334378 CTCCTTCCTA
**
15334388 AAAAATTTTAAAAAATCTCGAACCAT
1 AAAAATTTTAAAAAATCTCGAAAAAT
15334414 AAAAATTTTAAAAAATCAT-GAAAAAT
1 AAAAATTTTAAAAAATC-TCGAAAAAT
15334440 AAAAA
1 AAAAA
15334445 CGAGTCGTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.63, C:0.09, G:0.04, T:0.25
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCTCGAAAAAT
Found at i:15336973 original size:874 final size:872
Alignment explanation
Indices: 15333939--15341595 Score: 9595
Period size: 874 Copynumber: 8.7 Consensus size: 872
15333929 CCCAGTCTAA
* * * * *
15333939 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * * *
15334004 TTCGAGCATGTGCTGGTCCCGCATTTTTCTTCATCGAGGTACTATCGTCGGAGCATCG-CTAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAG
* * *
15334068 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGTGGGGTCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
15334133 CGATGGGTGCTGGTACTTGGCCGTTATATTGGTCCCCTAACCCTCATCAAACCTCGATAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15334198 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15334263 GGAGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15334327 TCCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
* * *
15334392 ATTTTAAAAAATCTCGAACCATAAAAATTTTAAAAAATCATGAAAAATA-AAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15334456 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCT
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15334521 TTGGCAGATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15334586 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCTTGTTTTGTCGATTGGCTTAG
649 CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
15334650 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAGTAGTAGGATCGGCA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * *
15334715 GCACACTGAGGGGGACCCGACCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGTGC
779 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* ** *
15334780 CCGCACGTTTATTTCGTGGTTTGACTTAG
844 CCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15334809 GCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C-G----GAC
* * *
15334874 CGAGGGTTACGGA-AACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTCTTCTTCGTCGGG
40 CGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* ** * * * * *
15334938 GCACCATCACCGGAGCATCACCGGAGAACCTGACCAGCAGCTTTGGGGTTTCGACGATCGGGGGG
104 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGG
* *
15335003 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGTACCCC-
168 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCT
* *
15335067 ATCCCGCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
15335132 GCCAGTAGCCATTAAAGTGTTTGTAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
15335197 CTTCAAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTGTACCCA
362 CTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
15335261 GTTTGGGGCCAAAACTCCATT-CGAAAAAATTTTAAAAAATCTCCAACCGTAAAAAGTTTCAAAA
426 GTTTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * * *
15335325 ATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGATGGCTTAAGGGACCATT
490 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
**
15335390 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
* * ** * * * ** * *
15335455 CCTATCACCCTATCGATCCACAGCTTGCTTATTCTGTCTCTTTGGCCAGCGTAGTACCCACCCAC
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCC-GCC-C
* *
15335520 CCACCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-AG
683 GC-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-
* * * * * *
15335584 GAGCAGACCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGAGGACCCGACCGATCCCCAG
745 GACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* ** * **
15335649 CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC-CGCTCGTTTTGTGTTTTGACTTAG
810 CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*** * * * * *
15335711 GCATACGGAGTTCATTTTGAGTCTAAGATCGGACTGAACCGAGTGTTGCGATAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
15335776 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15335841 ACCTGACCGGCAGCATTGGGGTTCCAGCGATCGGGGGGGCTGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15335906 ATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * * *
15335970 CGCCTTAAAGAGTATCTGAGATTTTACATGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGA
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
15336035 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTAAATTGTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
15336100 CATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAAC
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAAT
* * *
15336165 TTTAAAAAATCTCGAACCGTAAAAAGTGTCAAAAATTATGAAAAATAGAGAACGAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
15336230 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15336295 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCCCCCTATCGATCCATGGCTTGCGCA
586 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
15336360 TCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCATCGATTGGCTTAGGC
651 TCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
15336425 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGTAGGATCGGCAGC
716 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * *
15336490 AAGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
781 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
15336555 GCACGCTCGTTTCGTGGGTTGACTTAG
846 GCACGCTCGTTTCGTGGGTTGACTTAG
* *
15336582 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
15336647 CTTGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCACCGGACCATCGTCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15336712 ACCAT-ACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGCCCGAGGGGGTG-GGGCACATGATGT
131 ACC-TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CCG-GGGGGTGTGCGCACATGATGT
* *
15336775 GCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15336840 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15336905 TGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * *
15336970 TGTGCATGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
* * * ** * *
15337035 ATATTTAAAAAAATC-CTGAACCGCAAAAAGTTTTGAAAATCATGAAAACTAGAAAACAAGTCGT
452 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
15337099 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAACCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15337164 GCATTGGCACACAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
15337229 GCGCATCCCGTCTCTCTGGTTGGCGCAGTACCCGCCCGCCCGCCCGCCGGCTCATTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCTGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * ** *
15337294 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATAGAAGGTTGCGACAGTAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGG
* * * * * **
15337359 ATTGGCAGCACGTAAAGGGGGACCCGACCGATCTCCC-GCTGGTGCATCCTGCCCCTCTGGCCGG
772 ATCGGCAGCACGCAGAGGGGGACCCGACCGATC-CCCGGCTTGCGCATCCCACCCCTCTGGCCGG
* * *
15337423 TTGAGCGCCCGCATGCTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTGCCAG
836 CTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----T---GA---C-TT---AG
* * ** *
15337481 CCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATT
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG
* * * * ***
15337546 CTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCTTCAGGGCACCATCGTCGGAGCATTACC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
* * * * *
15337611 GAAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATTGGGTGGGCCGGGGGGTGTGCGCAAATGA
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCACATGA
* *
15337676 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAA
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * *
15337741 TCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTACTGCCAATAGCAATTAAAGTGTCTA
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15337806 AAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
15337871 TTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGA
* *
15337936 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG-CT
450 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-
* * ** *
15338000 GTCTTACCGTGAAACTTCACGTGAAGGCTTAAAAGACCATTGTAAGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
15338065 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCTATCGATCCACGG
579 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGG
*
15338130 CTTGCGCATCCCGTCTCTCTGGTTGGCATAGTGATCGCCTGTCCGCCCGCCCGCTTGCTCGCCCG
643 CTTGCGCATCCCGTCTCTCTGGCTGGC---GT-A------GT--GCCCGCCCGC---C-CGCCCG
* * * *
15338195 CTCGTTTCGTCGGTTGCCTTAGGCATATC-GAATTCATTCCCAGTCTAAGATCAGATCAGATCAA
692 CTCGTTTCGTCGGTTGGCTTAGGCATA-CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGA
* * * * * * *
15338259 GGGTTGGGGCAGCAGGATCAGCAGCACACAGTGGGGGACCCGATCGATCCCCAGCTTGCGCATCC
756 GGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
*
15338324 TACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
821 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15338376 GCATACGAAGTTCCTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
15338441 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATGGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15338506 ACTTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGAGGGTGTGGGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC---GGG-GGGTGTGCGCACATGATG
*
15338571 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15338636 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15338701 ATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTATTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
15338766 TGTGCATGCCAAAAAAAATACAAGGATCGCGTCTACCTAGTTTTGGGCCAAAACTCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
* * * * ** *
15338831 AATTTTTAACAAATCTCGAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGGGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15338896 TTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15338961 CATTGGAACATAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
15339026 CGCATCCCATCTCCCTAG-TCGGTGTAGTGCCTGCCCGCCCACCCGCTCTTTTCGTCGGTTGGCT
647 CGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** ** * * *
15339090 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGTGGTAGCAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCG
* * * * * *** *
15339155 GCAGCACGTAGA-GGGGACTC-AGCCGATCCCTGGCTTGCGCATCCCACCCTTCTAGATAGCTAA
776 GCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
*
15339218 GCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15339251 GCATACGAAGTTCATTCCCAGTCTAAGCATACAGACTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G----GA----C---C---G----GACC-G--
* * * *
15339316 CAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTTGTGCCGCATTTTTCTTCGTCGGGG
42 --AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
15339381 ------CG-C----CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGG
105 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG
* *
15339435 CCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
169 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
15339500 CCCTTATCAAACGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
15339565 CAGTAGCCATTTAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
15339630 TCGAGTTTTTAGCTGAATTTTTTTTTGCATGCTAACAAAAATACAAGGATCACATCTACCAAGTT
364 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** * * * * **
15339695 TATGGCAAAAAATCCTTT-CGAAAAAATTTTAAAAAATCTCAAACCGAAAAAAGTTTTGAAAATC
429 TGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* * *
15339759 GTGAAAAATAAAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCT
493 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-T
* *
15339824 -TGAATTTACAAGCCATAAAAATGACATTGGCACACA-AACATATGAAGATGTGGCTAAACCCAC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA-ATATGAAGATGTGCCTAAACCCAC
* * * *
15339887 CTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGTC
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCC
* *
15339952 CGCCCGCTCGTTTCGTCGGTTGGCTGAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGACCAG
686 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * *** * * *
15340017 ATCGAGGGTTGCGATAGCAGGATCGACAGTGTGCAAAGGGGGACACGATCGATCCCCAGG-TTGC
751 ATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GGCTTGC
* *
15340081 GCATCCCACCCTTCTGGCCGGCTGAGCGCCTGCACGCTCGTTAT-GTGGGTTGACTTAG
815 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT-TCGTGGGTTGACTTAG
* ** *
15340139 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** * * * * *
15340204 CTCGGGCATGTGCTGGTGCCATATTTTTCTTTGCCGGAGCACCATCACAGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
15340269 ACCTGACAGGCAGCATTGGGGTT-CGGATGATCTGGTGGGCCGAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGG-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
15340333 CAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTGGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15340398 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15340462 GGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 -GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15340527 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTT-TGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAA
* *
15340591 AAATTTTAAAAAATCT-GAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
15340655 TTGCCATGAAACTTCATGTAAAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAAT
517 TTGCCATGAAACTTCACGT--GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
15340720 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCT
580 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15340785 TGCGCATCTCGTCTCTCTAG-TCGGCGTAGT--------GTCCGCCCGCTCGTTTCGTCGGTTGG
645 TGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
15340841 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGGATTGAGGGTTGTGATAGCTGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGAT
* *
15340906 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTG
774 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
*
15340971 AGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15341005 GCATACGGAGTTCATTTCCAGTCTAAGATTGGATCGGACCGAGGGTTGC-AGTAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* ** * * * * *
15341069 GCTCAGGCATGTGCTGGTGCCATATTTTTGTTCGTTGGGGCACTATTGCCGGAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
** ** *
15341134 AACCTGACCACCGGCATTAAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
15341199 CGATGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCTTATCTCTCATCAAACCTCGAAAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15341264 ACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * * *
15341329 GGGGACACTTTTTTCAAACAGCCTCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15341394 TGCATGCCAA-AAAAAAACAAAAGGATCACGTCTACCAACTTTGGGGCCAAAACT-TCTTCCGAA
389 TGCATGCCAACAAAAATAC--AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCT-TTCCGAA
* * * * * *
15341457 AAAATTTTAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCAT
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
15341522 CTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
15341587 GCATTGGCA
581 GCATTGGCA
15341596 TGTACAAGGA
Statistics
Matches: 5913, Mismatches: 698, Indels: 356
0.85 0.10 0.05
Matches are distributed among these distances:
862 53 0.01
865 11 0.00
866 567 0.10
867 60 0.01
868 61 0.01
870 166 0.03
871 173 0.03
872 143 0.02
873 445 0.08
874 758 0.13
875 186 0.03
876 192 0.03
877 3 0.00
878 159 0.03
879 5 0.00
880 10 0.00
881 2 0.00
882 3 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 4 0.00
887 539 0.09
888 99 0.02
889 14 0.00
890 176 0.03
891 9 0.00
892 43 0.01
893 412 0.07
894 2 0.00
895 5 0.00
896 303 0.05
897 110 0.02
898 168 0.03
899 6 0.00
900 2 0.00
901 57 0.01
902 48 0.01
903 369 0.06
904 373 0.06
905 4 0.00
907 1 0.00
908 1 0.00
910 1 0.00
912 12 0.00
913 1 0.00
914 2 0.00
915 6 0.00
916 144 0.02
917 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15339280 original size:26 final size:26
Alignment explanation
Indices: 15339261--15339310 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15339251 GCATACGAAG
15339261 TTCATTCCCAGTCTAAGCATACAGAC
1 TTCATTCCCAGTCTAAGCATACAGAC
15339287 TTCATTCCCAGTCTAAG-AT-CAGAC
1 TTCATTCCCAGTCTAAGCATACAGAC
15339311 CAGACCAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 5 0.21
25 2 0.08
26 17 0.71
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (26 bp):
TTCATTCCCAGTCTAAGCATACAGAC
Found at i:15339644 original size:887 final size:877
Alignment explanation
Indices: 15339303--15341593 Score: 2822
Period size: 866 Copynumber: 2.6 Consensus size: 877
15339293 CCCAGTCTAA
* * * * *
15339303 GATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTTGTGCCGCATTT
1 GATC-GACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTT
* *
15339368 TTCTTCGTCGGGGCGCCATC-G-C-CGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGG
64 TTCTTCGTCGGGGCACCATCGGACGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG
* *
15339430 GGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
129 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
15339495 CCTATCCCTTATCAAACGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
194 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
15339560 GCTGCCAGTAGCCATTTAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
259 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
15339625 ACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCTAACAAAAATACAAGGATCACATCTACC
324 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
** * * * * * **
15339690 AAGTTTATGGCAAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCAAACCGAAAAAAGTTTTGAA
389 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* *
15339755 AATCGTGAAAAATAAAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
454 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
15339820 TGCT-TGAATTTACAAGCCATAAAAATGACATTGGCACACA-AACATATGAAGATGTGGCTAAAC
519 TG-TATGAATTTACAAGCCATAAAAATGGCATTGG-ACATAGAA-ATATGAAGATGTGCCTAAAC
* * *
15339883 CCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGAC
581 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC
* * * *
15339948 CGTCCGCCCGCTCGTTTCGTCGGTTGGCTGAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGA
646 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *** * * *
15340013 CCAGATCGAGGGTTGCGATAGCAGGATCGACAGTGTGCAAAGGGGGACACGATCGATCCCCAGG-
711 CCAGATCAAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GGC
* *
15340077 TTGCGCATCCCACCCTTCTGGCCGGCTGAGCGCCTGCACGCTCGTTAT-GTGGGTTGACTTAGGC
775 TTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT-TCGTGGGTTGACTTAGGC
15340141 ATAC-AGAGTTCATTCCCAG--T---C-TA-AG-A-TCG-
839 ATACGA-AGTTCATTCCCAGTCTAAGCATACAGCATTCGC
* * * *
15340170 GA-C--CGGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTT
1 GATCGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
* * * * *
15340232 CTTTGCCGGAGCACCATCACAGGAGCATCGTCGGAGAACCTGACAGGCAGCATTGGGGTT-CGGA
66 CTTCGTCGGGGCACCAT--C--G-G-A-CG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGG-
* * * * * *
15340296 TGATCTGGTGGGCCGAGGGGTGTGCGCACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATA
122 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
15340361 TTGGCCCCATATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
187 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
15340426 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGGGGACACTTTTTTCAAATGGTCACAA
252 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAA
*
15340490 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCA
316 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* ** *
15340555 CGTCTACCAAGTTTGGGGCGAAAACTCCTTTTGAAAAAATTTTAAAAAATCT-GAACAGTAAAAA
381 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* * * *
15340619 GTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAAACTTCATGTAAAAAGGCTT
446 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT--GAAGGCTT
*
15340684 AAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGG-CATGCAGAAATATGAAGATG
509 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGACAT--AGAAATATGAAGATG
* * *
15340748 TGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCTCGTCTCTCTAGTCGGCGTA
572 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTA
* *
15340813 GT--------GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
637 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * * *
15340870 AAGATCAGAACGGATTGAGGGTTGTGATAGCTGGATCGACAGCACGCAGAGGGGGACCCGACCGA
702 AAGATCGGACCAGATCAAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* *
15340935 TCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGA
767 TCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
15341000 CTTAGGCATACGGAGTTCATTTCCAG--T---C-TA-AG-ATT-G-
832 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGCATTCGC
* * * * *
15341036 GATCG---GACCGAGGGTTGCAGTAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCATATTTTT
1 GATCGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
* * * * ** ** *
15341098 GTTCGTTGGGGCACTATTGCCGGAGCATCGTCAGAGAACCTGACCACCGGCATTAAGGTTCCGAC
66 CTTCGTCGGGGCACCA-T--C-G-G-A-CG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGC
* *
15341163 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATTT
123 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * * *
15341228 TGGCCCCTTATCTCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTTAGATTTTAT
188 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
** * *
15341293 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGCCTCAAAA
253 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
15341358 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA-ACAAAAGGATCA
318 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC--AAGGATCA
* * * * *
15341422 CGTCTACCAACTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCAAATCGTAAAAA
381 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* * *
15341487 GTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAA
446 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
15341552 AGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
511 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
15341594 CATGTACAAG
Statistics
Matches: 1260, Mismatches: 133, Indels: 63
0.87 0.09 0.04
Matches are distributed among these distances:
862 62 0.05
863 1 0.00
864 1 0.00
865 5 0.00
866 564 0.45
867 65 0.05
868 61 0.05
871 1 0.00
872 65 0.05
873 313 0.25
874 120 0.10
875 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (877 bp):
GATCGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
CTTCGTCGGGGCACCATCGGACGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGACATAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
TCAAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
ATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
GTTCATTCCCAGTCTAAGCATACAGCATTCGC
Found at i:15341746 original size:187 final size:187
Alignment explanation
Indices: 15341414--15341784 Score: 566
Period size: 187 Copynumber: 2.0 Consensus size: 187
15341404 AAAAAAACAA
* * *
15341414 AAGGATCACGTCTACCAACTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCAAAT
1 AAGGATCACGTCTACCAACTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAC
* * *
15341479 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGA
66 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
15341544 AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAC
131 AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAC
* * *
15341601 AAGGATCACGTGTACCCAGTTTGGGCCCAAAACTCCATT-CGAAAAAATTTTAAAAAATCTCC-A
1 AAGGATCACGTCTACCAACTTTGGGCCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATC-CCAA
* **
15341664 ACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGT
64 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
* * * *
15341729 GATGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATG
129 GAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
15341785 CAAAAATATG
Statistics
Matches: 166, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
187 162 0.98
188 4 0.02
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.26
Consensus pattern (187 bp):
AAGGATCACGTCTACCAACTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAC
CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAC
Found at i:15343410 original size:718 final size:717
Alignment explanation
Indices: 15342037--15344962 Score: 3872
Period size: 708 Copynumber: 4.1 Consensus size: 717
15342027 AGCACTCGCA
* ** * *
15342037 CGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCT-GATCGGACC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCAGACC
* * * * *
15342101 GAGGGTTGCGGCAGCATATCCTGCGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGC
65 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* ** * * * *
15342166 ACCATCGCCGGAGCATCGTCAAAGAACCTGACTGGCGGCTTTAGGGTTCTGACGATCGGGGGGCC
130 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGGCC
* * * * * *
15342231 GGGGGGTGTACGCACATGATGTGCAATTGGTGCTGGTAGTTGGCCATTATATTGGCCCCTTATCC
195 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
15342296 CTCATCATACCTTGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
15342361 ATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAAGG-CACAAAATCTTGTACAGTTT
325 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
15342425 GATTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTG
390 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * **
15342490 GGGCCAGAA-CACCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAG-TTTCAAAATTTG
455 GGGCCA-AACCACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA-TCA
* * *
15342553 TGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCTAGTGAAGGCTTAAGGGACCATTGTAT
518 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTAT
*
15342618 GAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
15342683 CCACCCTATCGATCCACGGCATGCACATCCCGTCTCTCTGACCGGCATAGTGCTTGTCCGCCCGC
648 CCACCCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGTCCGCCCGC
15342748 CCGCC
713 CCGCC
* * *
15342753 CGCTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATTGGACCGGGCCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
* * ** * *
15342818 AGGGTTACGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGTCGCATTTTTAGTT-GTCGGGGC
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGTCGGGGC
* * * * **
15342882 ACCATCGTCGGTGCATCG-CTGGAGAACCTGACTGGAGACATTAGGTTTCCGATTATCAGGGGGG
130 ACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGACATTAGGGTTCCGACGATC-GGGGGG
* *
15342946 CCGGGAGGTGTGCGCACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
193 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** *
15343011 CCCTCATCAAACCTCGAGAACTCACACCATCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGC
258 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
15343076 CAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
323 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
15343141 TCGAGTTTTTCGCT-AATTTTTTTTGTGCATGCGAAAAAAAATACAAGGATCATGTCTACCAAGT
388 TCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** *
15343205 TTGGGGCCAAACCAAGTTCC-AGAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAAT
452 TTGGGGCCAAACCACCTTCCGA-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAAT
* *
15343269 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGT
516 CATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGT
15343334 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
15343399 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTG---A-CG-TAGT--GCCC
646 TACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGTCCGCCC
* *
15343456 ACCTGCC
711 GCCCGCC
* * *
15343463 CGCTCATTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
* *
15343528 AGGGTTGCGGCAGCACATGCTGGGTTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * *
15343593 -CATCGTCGGAGCATCGTCGGGGAACCTAACCGGCGACATTGGGGTTCC-AGCGATCGGTGGGCC
131 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTAGGGTTCCGA-CGATCGGGGGGCC
* *
15343656 GATGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATC
195 G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
15343721 CCTCGTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * ** *
15343786 AGTAGCAATTAAAGTGTCTAAAATGGGGACAATTTTATCCGATGGTCACAAAATCTTGTACACAT
324 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
15343851 CGAG-TTTTAGCTGAATTTTTTTGTTCATG-CAAACAAAAATACAATGATCACGTCTACCAAGTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTT
* * * * **
15343914 TGGGACCAAA-CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCCCAAAAAGTTTAAAAAATCA
453 TGGGGCCAAACCACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCA
15343978 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT-TGCGTGAAGGCTTAAGGGACCATTGTA
518 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCT-CGTGAAGGCTTAAGGGACCATTGTA
* * * * * *
15344042 TGAATTTATAGGCCATAAAAATGGAAATGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
15344107 ACCATCCTATCGATCCATGGCATGCGCATCCCATCTCTCTGGCCGGCATAGTGCTCGTCCGCTCG
647 ACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGTCCGCCCG
15344172 CCCGCC
712 CCCGCC
* ** * * * *
15344178 TGCTCGTTTCAG-CGGTCAGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT
1 CGCTCGTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACC
* *
15344242 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCG-CTGGGG
65 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGG
* * * *
15344306 CACCATCG-C----CA------GAGAACCTGACCGGCGGCATTGGGGTTCCGGCAATCAAGGGGG
129 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTAGGGTTCCGACGATC--GGGGG
* * *
15344360 TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTA
192 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
15344425 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
15344490 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAACATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
15344555 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAAT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
15344620 TTGGGGCCAAAACACCTTCCGAAAAACTTTTAAAAAATCCTGAACCGTAAAAAATTTTGAAAATC
452 TTGGGGCCAAACCACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATC
* * * *
15344685 ATGAAAAATAAAAAACAAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTA
517 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTA
* ** *
15344750 TGAATTTACAAGCCATAAAAATGGCATTGTCACATAGAAATATGAAGATGTACCTAAACCCACCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * ** * * * *
15344815 ACCACCATTTCGATCCACGGCTTGCGGATCCCGTCTCTCTGGCCTACGTAGTGCCCG-CCTGTCT
647 ACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGTCC-GCCC
*
15344879 TCCCGCC
711 GCCCGCC
* * * * * *
15344886 CGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCAAAGATCGGACCCGGCCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
15344951 AGGGTTGCGGCA
66 AGGGTTGCGGCA
15344963 CCAGGATCGG
Statistics
Matches: 1935, Mismatches: 238, Indels: 82
0.86 0.11 0.04
Matches are distributed among these distances:
705 30 0.02
706 182 0.09
707 273 0.14
708 348 0.18
709 224 0.12
710 123 0.06
711 3 0.00
712 4 0.00
713 4 0.00
714 2 0.00
715 123 0.06
716 159 0.08
717 174 0.09
718 279 0.14
719 7 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAACCACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGA
AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGTCCGCCCGCCCG
CC
Found at i:15345099 original size:26 final size:26
Alignment explanation
Indices: 15345069--15345119 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15345059 GTTGACTTAG
15345069 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
15345095 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCACTCTA
15345120 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:15346016 original size:26 final size:26
Alignment explanation
Indices: 15345978--15346027 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15345968 GACTTAGGCA
* *
15345978 TACGGAGTTCATTCCTAGTCTAAGCG
1 TACGGAGTCCATTCCCAGTCTAAGCG
15346004 TACGGAGTCCATTCCCAGTCTAAG
1 TACGGAGTCCATTCCCAGTCTAAG
15346028 ATTGGACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTCCATTCCCAGTCTAAGCG
Found at i:15346504 original size:905 final size:894
Alignment explanation
Indices: 15344202--15346736 Score: 3517
Period size: 904 Copynumber: 2.8 Consensus size: 894
15344192 GTCAGTTTAG
*
15344202 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACTGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACTGAGGGTTGCGGTAGCACATGCTGG
* *
15344266 GCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCC---A---GAGAACCT
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGC-GGGGCACCATCGCCGAGATTCGAGAACCT
* * * * * *
15344325 GACCGGCGGCATTGGGGTTCCGGCAATCAAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGAT
129 GACCGACGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
15344390 GGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
15344455 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
15344520 ACACTTTTTTCAAATTGTCACAACATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
15344585 TGCCAACAAAAATACAAGGATCATGTCTACCAAATTTGGGGCCAAAACACCTTCCGAAAAACTTT
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* ** * * *
15344650 TAAAAAATCCTGAACCGTAAAAAATTTTGAAAATCATGAAAAATAAAAAACAAATCGTCTTGCCA
453 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
15344715 TGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGT
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * **
15344780 CACAT-AGAAATATGAAGATGTACCTAAACCCACCTACCACCATTTCGATCCACGGCTTGCGGAT
583 C-CATGAGAAATATGAAGAT-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTT
* * * *
15344844 CCCGTCTCTCTGGCCTACGTAGTGCCCGCCTGTCTTCCCGCCCGCTCGTTTCGTAGGTTGGCTTA
646 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTC-TGCCG-CCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
15344909 GGCATACGGAGTTCATTCCAAGTCAAAGATCGGACCCGGCCGAGGGTTGCGGCACCAGGATCGGC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCGACCGAGGGTTGCGGCACCAGGATCGAC
* * ** * * * * * **
15344974 AGTATGCAGAGGGGGACCCGACTAATCCCCGGCTTGCTCATCCTGCCCCTCTGGCCGGTTGAGCA
774 AGCACGCAGAAAGGGACCCAACCAATCCCCGACTTGCTCATCCCGCCCATCTGGCCGACTGAGCA
* * * *
15345039 CCCGCACATTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAA
839 CCCGCACACTCGTTTCACGGGTGGACTTAGGCATACGGAGTTCATTCCCACTCTAA
* * * ** * *
15345095 GCATACGGAGTTCATTCCCAGTCTATGATCAGACCGGACTGAGGGTTGCGACAGAACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGTAGCACATGCTGGG
* * * *
15345160 CTTGGGCATGTGCTGGTGCCACACTTTTT-TTCACCGGGGCACCATCATCAGAGCATTTTCTTGA
66 CTCGGGCATGTGCTGGTGCCACA-TTTTTCTTC-GCGGGGCACCATC-GCCGAG-A--TTC--GA
* * *
15345224 GAACCTGACTGACGGCATTGGGATTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
123 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
15345289 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTTGAGAACTCA
188 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15345354 CACCCTCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAA
253 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15345419 TTGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
318 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
15345484 GGGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCAGAAAA
383 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** *
15345549 AATTTTAAAAAAT-CTAAACTTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
448 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
15345613 TGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGGAATTTACGAGCCATAAAAATGG
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAATGG
*
15345678 CATTGGCCATGCAGAAATATGAAGATTGCCCTAAAACCCACCTACCACCCTATCGATCCATGGCT
577 CATTGGCCATG-AGAAATATGAAGATTG-CCT-AAACCCACCTACCACCCTATCGATCCACGGCT
* *
15345743 TGCGCTTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCTGCCTGCTCGTTTCATCTGT
639 TGCGCTTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCC-GCC-GCTCGTTTCGTCGGT
* * *
15345808 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCGACTGAGGGTTGGGGCAGCAG
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCGACCGAGGGTTGCGGCACCAG
15345873 GATCGACAGCACGCAGAAAGGGACCCAACCAATCCCCGACTTG-TGCATCCCGCCCATCTGGCCG
767 GATCGACAGCACGCAGAAAGGGACCCAACCAATCCCCGACTTGCT-CATCCCGCCCATCTGGCCG
* * * * *
15345937 ACTGGGCACCCGCACGCTCGTTTTACGGGTGGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
831 ACTGAGCACCCGCACACTCGTTTCACGGGTGGACTTAGGCATACGGAGTTCATTCCCACTCTAA
* * * *
15346001 GCGTACGGAGTCCATTCCCAGTCTAAGATTGGACCGAAATGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGTAGCACATGCTGGG
15346066 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CGGGGCACCATCGCC-GAG-AT--TC-GAGA
* * * *
15346131 ACCTGACCGACGGCATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGT
125 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
15346196 GATGGGTGCTGGTACTTGACCCTTATATTGGTCCCCTATCCCTCGTCAAACCTCGAGAACTCACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15346261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15346326 GGGACACTTTTCTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15346390 ACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
15346455 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
450 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15346520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
15346585 TGG-CATGTAGAAATATCAAGATATGCTTAAACCCACCGACCACCCTATCGATTCACGGCTTGCG
580 TGGCCATG-AGAAATATGAAGAT-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
15346649 CATT-CCGTCTCTCTGGTCGGCGTAGTGCCCG-CC--C-G-C-CCGCTCGTTTTGTCGGTTGGCT
643 C-TTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCGCCGCTCGTTTCGTCGGTTGGCT
*
15346707 TAGGCATGCGGAGTTCATTCCCAGTCTAAG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAG
15346737 CATACGGAGT
Statistics
Matches: 1444, Mismatches: 167, Indels: 61
0.86 0.10 0.04
Matches are distributed among these distances:
893 90 0.06
894 53 0.04
895 2 0.00
897 1 0.00
898 2 0.00
899 1 0.00
901 2 0.00
902 59 0.04
903 103 0.07
904 418 0.29
905 375 0.26
906 338 0.23
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCGGGGCACCATCGCCGAGATTCGAGAACCTGA
CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCCA
TGAGAAATATGAAGATTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGAACCGACCGAGGGTTGCGGCACCAGGATCGACAGCACGC
AGAAAGGGACCCAACCAATCCCCGACTTGCTCATCCCGCCCATCTGGCCGACTGAGCACCCGCAC
ACTCGTTTCACGGGTGGACTTAGGCATACGGAGTTCATTCCCACTCTAA
Found at i:15346746 original size:26 final size:26
Alignment explanation
Indices: 15346710--15346762 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15346700 GTTGGCTTAG
*
15346710 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15346736 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15346762 G
1 G
15346763 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15348545 original size:718 final size:718
Alignment explanation
Indices: 15346004--15350354 Score: 5834
Period size: 711 Copynumber: 6.1 Consensus size: 718
15345994 AGTCTAAGCG
* * * **
15346004 TACGGAGTCCATTCCCAGTCTAAGATTGGACC-GAAATGAGGGTTGCGGTAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGTAGCACATGCTGGGCT
*
15346068 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCGGAGAAC
* * * * *
15346133 CTGACCGACGGCATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGA
130 CTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
15346198 TGGGTGCTGGTACTTGACCCTTATATTGGTCCCCTATCCCTCGTCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
15346263 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
15346328 GACACTTTTCTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTGTAC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
15346392 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
15346457 TTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
455 TTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
**
15346521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
15346586 GGCATGTAGAAATATCAAGATATGCTTAAACCCACCGACCACCCTATCGATTCACGGCTTGCGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** ** * * * * * *
15346651 TTCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATGC
649 TCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCG--C-CT--TTCCGCCTGCTCG-TT--TCGT-C
** *
15346716 GGAGTTCATTCCCAGTCTAAGCA
705 -G-G----TTGGC--T-TAGGCA
* * *
15346739 TACGGAGTTCATTCCCAGTCTAAGATTGGACCA-GACTGAGGGTTACGGTAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGTAGCACATGCTGGGCT
** * * * *
15346803 CTAGCATGTGCTGGTGCCACATTTTTCTTC-ACTGGGCCACCTTCACCGGAGCATCGTCGGAGAA
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATC-GCGGAGCATCGTCGGAGAA
* * * * * * *
15346867 CCTGACAGGCGGCGTTGGGGTTCTGGCGATCGGGGGGGCTGGGTGGGTGTGCGCACATGATGTAC
129 CCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGC
* *
15346932 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAATCCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15346997 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15347062 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * **
15347126 GCATATCAAAAAATAATACAAGGATCAC-TCCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GCATGCCAACAAA-AATACAAGGATCACGT-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
15347190 AATTTCAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
* * *
15347255 TGCCATGAAACTTCGCGTGAAGGGTTAAGGGACCATTGTAGGAATTTACAAGGCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGC
*
15347320 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
15347385 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCCGCCCTCCCGCTCGTTTCGTCGG
646 GCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTTTCCG-CCT---GCTCGTTTCGTCGG
15347450 TTGGCTTAGGCA
707 TTGGCTTAGGCA
* * * * *
15347462 TACGGAGTTAATTCCCAGTCTAAGATCGGA-CTGGACAGAGGGTTGGGGTAGCGCATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGTAGCACATGCTGGGCT
*
15347526 CGGGCATGTGCTGGTGCGACATTTTTCTTCGTCGGGGCACCAT--C---G---C--CGGAGAACC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGTCGGAGAACC
* * *
15347581 TGA-TCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATATGCGA
131 TGACT-GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
15347645 TGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
15347710 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTTTCTGACATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
15347775 AATACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGATTTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * **** * * *
15347840 TTGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGTTAAAAAACTCTTTCTGAAAAAAGT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** *
15347905 TTAGAAAATCTCGAACCGCAAAACA-TTTGGAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGC
455 TTAAAAAATCTCGAACCGCAAAA-AGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * * *
15347969 CATAAAACTTCACGTGAAGGCTTAAGGTACCATTCTATGAATTTACAAGCCATAAAAATTGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATT
* * *
15348034 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCAATCCACGGCTTGCGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * * *
15348099 TCCTGTCTCTCTGGCCGACGCAGTACCCACCCGCCTTTCCGCCTGCTCATTTCGTCAGTTAGCTT
649 TCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTTTCCGCCTGCTCGTTTCGTCGGTTGGCTT
* *
15348164 AGTCG
714 AGGCA
** * * * * *
15348169 TACGGAGTTCATTCCCAGTCTATTATCAGATC-GCACCGAGGGTTGCAGCAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGTAGCACATGCTGGGCT
** * * *
15348233 TAGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGGCTCCATCGTCGGAGCATCGGCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCGGAGAAC
* * * * *
15348298 CTGACTGGCAGCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCGCACACGATGTGCGA
130 CTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
15348363 TGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
15348428 CACTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTTAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
15348493 GACATTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTCTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
15348558 ATGCCAACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
15348623 TTAAAAAATCAT-GAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAATGAGTCGTCGTGC
455 TTAAAAAATC-TCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
15348687 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAGGAATTTACAAGGCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATT
* * *
15348752 GGCATCCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
15348817 TCCCGTCTCTCTGGCCGATGTAGTGCCCG--C-CC--ACCG---GCTTGTTTCGTCGCTTGGCTT
649 TCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTTTCCGCCTGCTCGTTTCGTCGGTTGGCTT
*
15348874 TGGCA
714 AGGCA
* ** * *
15348879 TACGGAGTTAATTCCCAGTCTAAGATCGGA-TTGGACCGATGGTTGCGGCAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGTAGCACATGCTGGGCT
* * **
15348943 CGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGGATCGTTAGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCGGAGAAC
* * * *
15349008 TTGA-TCGACGGCATTGGGGTTTCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
130 CTGACT-GACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
*
15349072 GATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* **
15349137 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCA-TAAAGCATCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15349201 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15349266 GCATACCAAAAAATAATACAAGGATCAC-TCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GCATGCCAACAAA-AATACAAGGATCACGT-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * **
15349330 AATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
* * *
15349395 TGCCATGAAACTTCGCGTGAAGGGTTAAGGGACCATTGTAGGAATTTACAAGGCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGC
*
15349460 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** *
15349525 GCATCCCGTCTCTCTGGCCGATGTAGTGCCCG--C-CC-TCCCGCCCACTCGTTTCATCGGTTGG
646 GCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTTTCCGCCTGCTCGTTTCGTCGGTTGG
15349586 CTTAGGCA
711 CTTAGGCA
* * * *
15349594 TGCGGAGTTCGTTCCCAGTCTAAGATCGGACC-GGACCGATGGTTGCGGCAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGTAGCACATGCTGGGCT
**
15349658 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGTCGGAGAAC
* * * * * *
15349723 CTGACCGACGACATAGGGGTTCCAAAGATC------G--GGGGGGTGTGCGCACATGATGTGTGA
130 CTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
15349780 TGGGTGCTGGTACTTGGCCATTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
15349844 CCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
15349909 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * **
15349974 ACGCCAACATAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACTCCTTCCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
15350039 TTAAAAAATAGT-GAACCACAAAAA-TTTCAAAAATTGTGAAAAATAGAAAAGGAGTTGTCGTGC
455 TTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
*
15350102 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATT
* ** *
15350167 GACACACAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGCGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** *
15350232 TCCCGTTTCTCTGGCCGATGTAGTGCCCGCCCTCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
649 TCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTTTCCGCCTGCTCGTTTCGTCGGTTGGCTT
15350297 AGGCA
714 AGGCA
* * * *
15350302 TACGGAGTTCATTACCAGTTTAAGATCAGACCA-GACCGAGGGTTGCAGTAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGTAGCA
15350355 AGATCGATAG
Statistics
Matches: 3211, Mismatches: 351, Indels: 135
0.87 0.09 0.04
Matches are distributed among these distances:
704 183 0.06
705 147 0.05
706 139 0.04
707 113 0.04
708 76 0.02
709 2 0.00
710 245 0.08
711 838 0.26
712 66 0.02
713 4 0.00
714 2 0.00
715 161 0.05
716 2 0.00
717 2 0.00
718 495 0.15
719 2 0.00
720 1 0.00
722 1 0.00
723 95 0.03
724 2 0.00
726 3 0.00
730 1 0.00
731 1 0.00
732 3 0.00
733 3 0.00
734 2 0.00
735 150 0.05
736 217 0.07
737 254 0.08
738 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (718 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGTAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGTCGGAGAACC
TGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTTTCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
GCA
Found at i:15351388 original size:26 final size:26
Alignment explanation
Indices: 15351352--15351404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15351342 GTTGACTTAG
*
15351352 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15351378 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15351404 G
1 G
15351405 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15351621 original size:894 final size:887
Alignment explanation
Indices: 15349591--15352494 Score: 3907
Period size: 901 Copynumber: 3.2 Consensus size: 887
15349581 GTTGGCTTAG
* * * * *
15349591 GCATGCGGAGTTCGTTCCCAGTCTAAGATCGGACCGGACCGATGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
15349656 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCAC-CGAGCATCGTCAGAGA
* * * * *
15349721 ACCTGACCGACGACATAGGGGTTCCAAAGATC------G-GGGGGGTGTGCGCACATGATGTGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
*
15349779 ATGGGTGCTGGTACTTGGCCATTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15349843 CCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGG
*
15349908 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTG
* * * **
15349973 CACGCCAACATAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACTCCTTCCGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
15350038 TTTAAAAAATAGT-GAACCACAAAAA-TTTCAAAAATTGTGAAAAATAGAAAAGGAGTTGTCGTG
453 TTTAAAAAAT-CTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
15350101 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
15350166 TGACACACAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGCGC
582 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
* *
15350231 ATCCCGTTTCTCTGGCCGATGTAGTGCCCGCCCTCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
647 ATCCCGTCTCTCTGGCCG-TGTAGT----G----CCTGCCCGCCCGCTCATTTCGTCGGTTGGCT
*
15350296 TAGGCATACGGAGTTCATTACCAGTTTAAGATCAGACCAGACCGAGGGTT-GCAGTAGCAAGATC
703 TAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGGCAGTAG---GATC
* * * *
15350360 GATAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCTGCCCCTATGGCCAGTTGA
765 GGTAGCACGCAGAGGGGGA-CCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCCGGTTGA
* * *
15350425 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AAGTTCATTCCTAGTCTAA
829 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * ** * * *
15350483 GCATACGGAGTTCGTTTGTAGTCTAAGATCAAACTGGACCGAGGGGTGCGACAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15350548 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCAACGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCG-AGCATCGTCAGAGA
* * *
15350613 ACCTGACCGACTGCATTGGGGTTCCGATGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGGCGGGGGGTGTGCGCACATGATGTGC
* * * * * *
15350678 GATCGATGCTGGTACTTGGTCCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCCCA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15350743 CCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGTCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCCATTAAAGTGTCTGAAATG
15350808 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTATTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT-TTTTTGT
* * * *
15350873 CCATGCCAACAAAAATACACGGATCATGTCTACCATGCTTGGGGCCAAAACTCCTTCCGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
15350938 TTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
15351003 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
15351068 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
582 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
* *
15351133 ATCCCGTCTCTCTGGCCAGCGTAATGCCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
647 ATCCCGTCTCTCTGGCC-GTGTAGTGCCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
* ** * * * *
15351198 CGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCGAGGGTTAAGGCAATAGGATTGGCAGCAT
711 CGGAGTTCATTACCAGTCTAAGATCAGACCAG-ACCGAGGGTT--GGCAGTAGGATCGGTAGCAC
* *
15351262 GCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATCCCGCCCTTATGGCCGGTTGAGCACCCGC
773 GCAGAGGGGGACC-GGTCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCCGGTTGAGCGCCCGC
* * *
15351327 ATGCTCGTTTCGTTGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAA
837 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15351378 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15351443 CTTGAGCATGTGCTAGAGCTACATTTTTCTTCATCGGGGCACCATCGCGCGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCAC-CGAGCATCGTCAGAGA
*
15351508 ACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
15351573 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
15351638 TCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTATCTGAAATGGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
15351703 GACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGATTTTTTTATGCG
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCA
* * *
15351768 TACCAAAAAATAATACAAGGATCACT-CCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
390 TGCCAACAAA-AATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** *
15351832 TTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
15351897 CATGAAACTTCGCGTGAAGGGTTAAGGGACCATTGTAGGAATTTACAAGGCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
15351962 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATACACGGCTTGCACA
583 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
* * * **
15352027 TCCTGTCTCTCTAGCCGGTGTAGTGCCCGCCCGCCCACCCGCCCACTCATTTCGTCAATTGGCTT
648 TCCCGTCTCTCTGGCC-GTGTAGTGCCTGCCCG----CCCG----CTCATTTCGTCGGTTGGCTT
* * * * *
15352092 AGGCATACGGAGTTCATTGCTAGTCCAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGG
704 AGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTT--GGCAGTAGGATCGG
* ** * * * * *
15352157 TAGCACGCAAAGGGGGACTCGACCTATCCTCGACTTGCGCAT-CCGCCCCTCTGG-CGGCTGAGC
767 TAGCACGCAGAGGGGGAC-CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCCGGTTGAGC
* *
15352220 GCCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15352277 GCATATGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15352342 CTTGTGCATGTGCTGGTGCCACTTTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTAAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACC-GAGCATCGTCAGAGA
* *
15352407 ACCTGACCGACGGCATT-GGGTTCCGACGATTGGGGGGGTCGGGGCGGGTGTGCGCACATCATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGG-GGGTGTGCGCACATGATGT
15352471 GCGATGGGTGCTGGTACTTGGCCC
192 GCGATGGGTGCTGGTACTTGGCCC
15352495 GCATACGGAG
Statistics
Matches: 1778, Mismatches: 196, Indels: 67
0.87 0.10 0.03
Matches are distributed among these distances:
891 1 0.00
892 153 0.09
893 335 0.19
894 289 0.16
895 155 0.09
896 2 0.00
897 10 0.01
898 22 0.01
899 190 0.11
900 67 0.04
901 373 0.21
902 180 0.10
903 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGAGCATCGTCAGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
CGTCTCTCTGGCCGTGTAGTGCCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGGCAGTAGGATCGGTAGCACGCAGAGGG
GGACCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCCGGTTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15352280 original size:26 final size:26
Alignment explanation
Indices: 15352251--15352303 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15352241 GTTGACTTAG
*
15352251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15352277 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15352303 G
1 G
15352304 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15353438 original size:26 final size:26
Alignment explanation
Indices: 15353402--15353454 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15353392 GTGGACTTAG
*
15353402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15353428 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15353454 G
1 G
15353455 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15354303 original size:25 final size:25
Alignment explanation
Indices: 15354273--15354320 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
15354263 GTTGACTTAG
15354273 GCATACGGAGTTCATTCCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
15354298 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
15354321 TAAGATCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:15355673 original size:891 final size:889
Alignment explanation
Indices: 15352495--15356093 Score: 4349
Period size: 904 Copynumber: 4.0 Consensus size: 889
15352485 TACTTGGCCC
* * * * * * * * *
15352495 GCATACGGAGTTAATTCCAAGTCTAAGCATATGGAGATCATTCCCAATCTAAGATCAGATCGGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
* * * * *
15352560 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCG-CTGGG
66 CGACGGTTGCGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGTATTTTTCTTCGTC-GGG
* * * * * *
15352624 GCACCATTGCCAGAGCATC-ACTGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCAGGGG
130 GCACCATCGTCGGAGCATCGTC-GGAGAACATGACCGGCGGCATTGGGGTTCTGACGATC-GGGG
* * *
15352688 GGTCAGGGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGC
193 GGGC--CGAGG-GGGTGTGCGCACATGATGTGCGAT-GG-G-TGCTACTTGGCCCTTATATTGGC
* * *
15352753 CCCTTATCCCTCATCAAACCTCGAGAACTCACA-CCCATTGAAAGAGCATTTGAGATTTTACAGG
252 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAAAGCATTTGAGATTTTACAGG
* * * * *
15352817 TTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACGAAATCT
316 TTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCT
* * * *
15352882 TGCACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
381 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCT
** * **
15352947 ACCAAGTTT-GGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
446 ACCAAGTTTCAAG-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTT
* * * * *
15353011 CAAAAATTC-TAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGA
510 CAAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAGGG
* * * *
15353075 ACCATTGTATGAATTTACAAGCCGTAAAAATGGCATCGGCACGTAGAAATATGAAGATGTGCCTA
574 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * *
15353140 AA-CCTCCTACCACCCTATCGATCCATGGCATGCGCATCCCGTCTCTCTGG-CTGACGTAGTGCC
639 AACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC-GGCGTAGT---
* * **
15353203 CGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCGTAGTCTA
700 -GCCCA----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * * * * * *
15353268 AGACTGGACTGGACCAAGGGTTGCGACCGCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGAT
760 AGA-T-CACCAGACTAAGGGTTGCGGCAGCAAGATTGGCA-CACGAAGAGGGGGACCCG-CCGAT
* * * * * *
15353333 CCTCGGCTTGCGCAT-CTCGCCCCTCTGGCCGGCTGAGCACCTGCACACTCATTTCGTGGGTGGA
821 CCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
15353397 CTTAG
885 CTTAG
* *
15353402 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC-----T------A-A-
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
* **
15353454 -GA----T----CAG-AC---C-GGAC-CGA-C----G-TGGTGCCGTATTTTTCTTCACCGGGG
66 CGACGGTTGCGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGTATTTTTCTTCGTCGGGG
*
15353498 CACCATCGTCGGAGCATCGTCGGAGAACATGACCGGCGGCATTGGGGTTCTGATGATCGGGGGGG
131 CACCATCGTCGGAGCATCGTCGGAGAACATGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGG
*
15353563 CCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCTTTATATTGGCCCCCT
196 CCGA-GGGGGTGTGCGCACATGATGTGCGATGGGTGC---TACTTGGCCCTTATATTGGCCCCCT
*
15353628 ATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
257 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
* * * *
15353693 TCCAGCAACCATTAAAGTGTTTGAAATGGAGACACTTTTTTCAAATGGTCCCAAAATCTTGTACA
322 GCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACA
* *
15353758 CTTCGAGTTTTTAGCTGAAATATTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAG
387 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAG
*
15353823 TTTCAAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCTAAAAT
452 TTTCAAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAAT
* * * *
15353888 CGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGCGTAGGGTTAAGGGACCAATCT
517 CGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGT
15353953 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
582 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
15354018 AACCACCATATCGATCCACGGCATGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCC
647 AACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT----GCCCA---
* * *
15354083 GCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
705 -CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T-CAC
** * * * * *
15354148 TGGACCAAGGGTTGCGGCCGTAAGATTGGCAACACGAAGAGGGGGACCCGGTCGATCCCTGGCTT
767 CAGACTAAGGGTTGCGGCAGCAAGATTGGC-ACACGAAGAGGGGGACCC-GCCGATCCCCGGCTT
* * **
15354213 GCGCAT-CTCGCCCCTCTGGCCGACTGAGCGCCTGCATACTCGTTTCGTGGGTTGACTTAG
830 GCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
15354273 GCATACGGAGTTCATTCCCAGTC-AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
* * * * *
15354337 TGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGG
66 CGACGGTTGCGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGTATTTTTCTTCGTCGGGG
* *
15354402 CACCATTGTCGGAGCATTGTCGGAGAACATGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGG
131 CACCATCGTCGGAGCATCGTCGGAGAACATGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGG
* *
15354467 CCGAAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCT
196 CCG-AGGGGGTGTGCGCACATGATGTGCGATGGGTGC---TACTTGGCCCTTATATTGGCCCCCT
* * *
15354532 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTAATAGGTTTGCT
257 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
* *
15354597 GCCAGCAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCCCAAAATCTTGTACA
322 GCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACA
* * *
15354662 CTTCGAGTTTTTAGCTGAATGTTTTTGTGCATCCCAACAAAAATACGAGGATCATGTCTACCAAG
387 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * *
15354727 TTTCTTGCGAAAACTCATTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
452 TTTCAAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAAT
*
15354792 CGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAGGCACCATTGT
517 CGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGT
*
15354857 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
582 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
15354922 AACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCC
647 AACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCC
* * *
15354987 GCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGACTAA
712 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC--ACCAGACTAA
* * * *
15355052 GGGTTGCGACGGCAAGATTGGTCACACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGTATCC
775 GGGTTGCGGCAGCAAGATTGG-CACACGAAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCC
* * * *
15355117 TGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTAACTTAG
838 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
15355169 GCATACAGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAAATCGGATCAGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
* *
15355234 CGACGGTTGTGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGACGGTTGCGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * * * *
15355299 CACCATCATCGAAGCATCGCCGGAGGACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
131 CACCATCGTCGGAGCATCGTCGGAGAACATGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGG
** **
15355364 CC-AGGGGGTGCACGCACATGATGTGCGATGGGTGC-ACTTGGCCCTTATATTGGCTGCCTATCC
196 CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTACTTGGCCCTTATATTGGCCCCCTATCC
*
15355427 CACATCAAACCTCGAGAACTCACACCCCCTTAAAGAA-CATTTGAGATTTTACAGGTTTGCTGCC
261 CTCATCAAACCTCGAGAACTCACACCCCCTTAAA-AAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
15355491 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
325 AGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTT
* * * * * *
15355556 TGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATGCAAGGATCACGTCTACCGAGTTT
390 CGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*** * * *** **
15355621 GGGGCCAAAACTCCTTCCAAAAAAATTTCAAAAAATCCCGAACTTTAAAAAGTTTCAAAAATTAT
455 CAAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGT
* * * *
15355686 GAAAAATAGAAAACGAGTCGACTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
520 GAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATG
* * * *
15355751 AATTTACAAGCCATAGAAATGGCATTAGCACGCAGATATATGAAGATGTGCCTAAACCCACCAAC
585 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAAC
* * * * * ** * * *
15355816 AACCCTATCGATCCACGACTTTCGTATCCCATCTCTCTGACCGGTGTAGCGCCGGCTCGCCCGCC
650 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG-C--C-CACCCG-C
* *
15355881 CGCTTGCTCGTTTCGTCGCTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGCCTAGA
710 C-C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACC-AGA
* * * * * * *
15355946 CTAAGGGTTGCGGCAACAGGATGGGCAGCACGTAGAGGAGGACCCGACCGATCCTCGGCTTACGC
771 CTAAGGGTTGCGGCAGCAAGATTGGCA-CACGAAGAGGGGGACCCG-CCGATCCCCGGCTTGCGC
** * * * *
15356011 ATCCTGCCCCTCTAACCGGCTAAGCGCCCGTACGCTCGTTTCGTCGGTTGCCTTAG
834 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15356067 GGATACAGAGTTCATTCCCAGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
15356094 ATCAGACCGG
Statistics
Matches: 2369, Mismatches: 258, Indels: 139
0.86 0.09 0.05
Matches are distributed among these distances:
867 3 0.00
868 1 0.00
869 4 0.00
870 408 0.17
871 261 0.11
872 10 0.00
873 72 0.03
874 2 0.00
875 1 0.00
878 1 0.00
879 2 0.00
880 3 0.00
881 1 0.00
882 1 0.00
884 4 0.00
885 3 0.00
888 1 0.00
889 1 0.00
891 412 0.17
892 5 0.00
893 4 0.00
894 1 0.00
895 37 0.02
896 181 0.08
897 165 0.07
898 128 0.05
899 50 0.02
900 5 0.00
902 1 0.00
903 1 0.00
904 556 0.23
905 1 0.00
907 43 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
CGACGGTTGCGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGTATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCGTCGGAGAACATGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGG
CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCA
GCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTTC
AAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACCAGACTAAGGGTTG
CGGCAGCAAGATTGGCACACGAAGAGGGGGACCCGCCGATCCCCGGCTTGCGCATCCTGCCCCTC
TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15356179 original size:159 final size:158
Alignment explanation
Indices: 15355886--15356252 Score: 443
Period size: 159 Copynumber: 2.3 Consensus size: 158
15355876 CCGCCCGCTT
* * *
15355886 GCTCGTTTCGTCGCTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGCCTAGACTAAG
1 GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGCCTAGACCAAG
* * * *
15355951 GGTTGCGGCAACAGGATGGGCAGCACGTAGAGGAGGACCCGACCGATCCTCGGCTTACGCATCCT
66 GGTTGCGGCAACAAGATCGGCAGCACGTAGAGGAGGACCCAACCGATCCTCGGCTTACGCATCCC
15356016 GCCCCTCTAACCGG-CTAAGCGCCCGTAC
131 GCCCCTCTAACCGGTC-AAGCGCCCGTAC
* * * * *
15356044 GCTCGTTTCGTCGGTTGCCTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GGACCG
1 GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-G-CCTAGACCA
* * * * * *
15356108 AGGGTTGTGGCAGCAAGATCGGCCGCACGTTGAGGGGGACCCAACCGATCC-CTGGCTTGCGCAT
64 AGGGTTGCGGCAACAAGATCGGCAGCACGTAGAGGAGGACCCAACCGATCCTC-GGCTTACGCAT
** *
15356172 CCCGCCCCTCTGGCCGGTCGAGCGCCCGTAC
128 CCCGCCCCTCTAACCGGTCAAGCGCCCGTAC
* * * * *
15356203 ACTTGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15356253 CATATGGAGT
Statistics
Matches: 177, Mismatches: 28, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
158 50 0.28
159 124 0.70
160 3 0.02
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.22
Consensus pattern (158 bp):
GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGCCTAGACCAAG
GGTTGCGGCAACAAGATCGGCAGCACGTAGAGGAGGACCCAACCGATCCTCGGCTTACGCATCCC
GCCCCTCTAACCGGTCAAGCGCCCGTAC
Found at i:15356256 original size:26 final size:26
Alignment explanation
Indices: 15356226--15356278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15356216 GTTAACTTAG
15356226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15356252 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15356278 G
1 G
15356279 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15358457 original size:711 final size:707
Alignment explanation
Indices: 15357096--15359312 Score: 3095
Period size: 711 Copynumber: 3.1 Consensus size: 707
15357086 GCCGGTTGAG
* * * * * *
15357096 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATTCCTAGTCTATGATCGGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * *
15357161 CCGGACTAAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATCTACTGTTGCCGCATTTTTCTTTG
66 CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTG
*
15357226 TCGGGGCACCATCGCCAGAGCATCACCGGAGAA-CTCGACCGGCGGCATTGGGGTTCCGACGATC
131 TCGGGGCACCATCGTC-GAGCATC-CCGGAGAACCT-GACCGGCGGCATTGGGGTTCCGACGATC
* **
15357290 GGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTATTGGTACTTGGCCCTTATATTGG
193 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
15357355 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCATTAAAGAGCATTTGAGATTTTATAGGT
258 -CCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
15357420 TTGCTGTCAGTAGCCATTAATGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTT
322 TTGCTGTCAGTAGCCATTAATGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCAAAAAATCTT
* * *
15357485 GTATACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
387 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
*
15357550 CCAAGTTTAGGACCAAAACTCCTTCCAAAAAAATTTTAAAAGATCCCGAACCGCAAAAAGTTTCA
452 CCAAGTTTAGGACCAAAACTCCTTCGAAAAAAATTTTAAAAGATCCCGAACCGCAAAAAGTTTCA
* * *
15357615 AAAATCATGAGAAATAGAAAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGTACC
517 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
15357680 ATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAAC
582 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
* * *
15357745 CCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCC
647 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
15357806 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
15357871 TCGGA-TCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
66 CCGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTT
** * *
15357935 G-CTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAACGGCATTGGGGTTCCGGCAAT
130 GTC-GGGGCACCATCGTC-GAGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* **
15357999 CGGGGGGACCGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCAATTATATT
192 CGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
15358064 TGCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAG
256 GGCCCCTATCCCTCATCAAACCTCGAGAACTCGCA-CCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
15358129 GTTTGCTGTCAGTAGCCATTAATGTGTCTGGAATAAGGACACTTTTTTCACATGGTCATAAAATC
320 GTTTGCTGTCAGTAGCCATTAATGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCAAAAAATC
* *
15358194 TTGTACACTTCGAGTTTTTAGCTGAATTTTCTTGTACATGCCAACAAAAATACAAGGATCACGTC
385 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
15358259 TACCAAGTTTAGGACCAAAACTCCTTCGAAAAAAATTTTAAAAGATCCCGAACCGCAAAAAGTTT
450 TACCAAGTTTAGGACCAAAACTCCTTCGAAAAAAATTTTAAAAGATCCCGAACCGCAAAAAGTTT
* * * *
15358324 CAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAGTTCATGTGAAGGCTGAAGGGA
515 CAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
15358389 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAA
580 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
*
15358454 ACCCACCTACC-CGCCTA-CTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCC
645 ACCCACCTACCAC-CCTATC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--
15358517 CGC
706 C-C
* *
15358520 CTGCCGGTCCGCCCGCTCGTTTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
1 C-G-C---CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * *
15358585 TCAAACTGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGTATTTTT
61 TCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
*
15358650 CTTTGTCGGGGCACCA---TC--GC-T---GGAGAACCTGACTGGCGGCATTGGGGTT-CGACGA
126 CTTTGTCGGGGCACCATCGTCGAGCATCCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* *
15358705 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTAGATT
191 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
15358770 GGCCTCCTATCCCTCATCAAACCTTGAGAACTCGCAACCCCTTAAAGAGCATTTGAGATTTTACA
256 GGCC-CCTATCCCTCATCAAACCTCGAGAACTCGC-ACCCCTTAAAGAGCATTTGAGATTTTACA
* * * * * *
15358835 GGTTTGCTGCCAGTAGCCAATAAAGTGTCTCAAATGTGGACACTTTTTTGAAATGGTCAAAAAAT
319 GGTTTGCTGTCAGTAGCCATTAATGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCAAAAAAT
* * **
15358900 CTTGTACACTTCAAGTTTTTGGCTGAATTTTTTTGTGCATGAGAACAAAAATACAAGGATCACGT
384 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * ** *
15358965 CTACCAAGTTTGGGACAAAAACTCCTTCCG-AAAAAATTTTAAAAAATTTCGAACCACAAAAAGT
449 CTACCAAGTTTAGGACCAAAACTCCTT-CGAAAAAAATTTTAAAAGATCCCGAACCGCAAAAAG-
* * * *
15359029 TTTC-AAAATCATGAAAAATAGAAAACGAGTTGTCTTGTCATCAAACTTCACGTGAAGGCTTAAG
512 TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * *
15359093 GGACAATTGTATGAATTTACAAGACATAAAATTGGCATTGACATGCAGAAATATGAAGATGTGCC
577 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCC
* *
15359158 TAAACCCACC-ACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTACTGC
642 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA----
15359222 CCGCTCGCC
703 --G-T-GCC
* ** * * *
15359231 CGCCCGCCCCCTCGTTTTGTCGGTTGGCTTACGCATACGGAGTTCATTCTCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
15359296 CCGGA-TCGAGGGTTGCG
66 CCGGACT-GAGGGTTGCG
15359313 AAAGTAGGAT
Statistics
Matches: 1348, Mismatches: 127, Indels: 68
0.87 0.08 0.04
Matches are distributed among these distances:
705 1 0.00
706 164 0.12
707 364 0.27
708 32 0.02
709 3 0.00
710 208 0.15
711 437 0.32
712 3 0.00
713 4 0.00
714 3 0.00
715 1 0.00
716 3 0.00
719 123 0.09
720 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (707 bp):
CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTG
TCGGGGCACCATCGTCGAGCATCCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CTATCCCTCATCAAACCTCGAGAACTCGCACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGTCAGTAGCCATTAATGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCAAAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTAGGACCAAAACTCCTTCGAAAAAAATTTTAAAAGATCCCGAACCGCAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
Found at i:15359452 original size:26 final size:26
Alignment explanation
Indices: 15359422--15359474 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15359412 GTTGACTTAG
15359422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15359448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15359474 G
1 G
15359475 ATCCGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15360383 original size:59 final size:59
Alignment explanation
Indices: 15360291--15360410 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 59
15360281 TGGCCAGCTG
* *
15360291 AGAGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1 AGAGCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGGTCATTCCCAGTCTA
*
15360350 AGAGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGGTCATTCCCAGTCTA
1 AGAGCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGGTCATTCCCAGTCTA
15360409 AG
1 AG
15360411 CTTATGGAGT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26
Consensus pattern (59 bp):
AGAGCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGGTCATTCCCAGTCTA
Found at i:15365023 original size:26 final size:26
Alignment explanation
Indices: 15364975--15365025 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15364965 GCTGACTTAG
* **
15364975 GCATACGGAGTGCATTCGTAGTCTAC
1 GCATACGAAGTGCATTCCCAGTCTAC
*
15365001 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTGCATTCCCAGTCTA
15365026 AGATCGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTGCATTCCCAGTCTAC
Found at i:15365913 original size:26 final size:26
Alignment explanation
Indices: 15365874--15365926 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15365864 GTTGACTTAG
* *
15365874 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15365900 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15365926 G
1 G
15365927 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:15366978 original size:26 final size:26
Alignment explanation
Indices: 15366942--15366994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15366932 GTTGACTTAG
*
15366942 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15366968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15366994 G
1 G
15366995 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15368759 original size:26 final size:26
Alignment explanation
Indices: 15368722--15368774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15368712 GTTGACTTAG
*
15368722 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15368748 GCATACGAAGTTCCTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15368774 G
1 G
15368775 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15370278 original size:904 final size:902
Alignment explanation
Indices: 15366067--15371811 Score: 6568
Period size: 877 Copynumber: 6.4 Consensus size: 902
15366057 GTTGACTTAG
* * *
15366067 GCATACGGAGTTCATTCCCAGTCAAAGATCGGATC-GAACTGAGAGTTGCAGG-AGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-AC-GAGGGTTGC-GGCAGCACATGCTG
* * ** * ** * *
15366130 GGCTCGAGCATGTGCTGGTGGCGCATTTTTCTTCTTC-GTGACACCATCGCTGGAGCATCGTCGG
63 GGCTCGA-CATGTGCTGGTGCCACATTTTTCTTCGCCAG-GGCACCATTACCGGAGCATCGCCGG
* * * * **
15366194 AGAACCTGACCGAAGGCATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGA
126 AGAACCTGACAGATGGCATTGGGGTTCTGACGATTAGGGGGGCCG-GGGGGGTGTGCGCACATGA
* * *
15366259 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAAC
* * *
15366324 TGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGCCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
** * **
15366389 AAATGGAAAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
* * * * ** * *
15366454 TTTGTGCAGGACAAAAAAAATACAAGGATCAAGTCTATCAAGTTTGGGGTTAAAACTCCTTCCAA
385 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
** * * ** *
15366519 AAAAATTTTAAAAAAT-CTTAAGCCGCAGAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
450 AAAAATTTTAAAAAATCCCGAA-CCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
15366583 TTCTTGCCGTGGAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** * * * *
15366648 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCTCCCTATCAATCCATGAC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** * *
15366713 TTACGCATCCCGTCTCTCTGGCCG--GT-GCG-GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGG
* *** * ** * *
15366774 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGGGTCCAAGGGTTGTGGCAGCA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCA
* ** * * * * * *
15366839 AGATTGGCAACACGCAGAGGGGGACCCGGTCGATCCTCAGCTTGCGCATCCCACCCCTCTGGCCG
774 GGATCAGTAGCACACAGAGGGGGACACGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * **
15366904 GCTGAGCACCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
839 ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * * *
15366968 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCATATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
15367033 CTCAGGCTTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGCCGGAGA
65 CTC-GACATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATTACCGGAGCATCGCCGGAGA
* * * * **
15367098 ACCTGACTGACGGCATTAGGGTTC-CAGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
129 ACCTGACAGATGGCATTGGGGTTCTGA-CGATTAGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* * *
15367162 TGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTC
* * * * *
15367227 ACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTTCTGCTAGTAGCCATTGAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
15367292 ATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCCGAATTTTTA
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * * *
15367357 TGTGCGTACCAAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAA
387 TGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * * * *
15367422 AAAATTTTAAAAAATCCCGAACCGCAAAAAAG-ATCTAAAATTGTCAAAAATAAAAAACGAGTCA
451 AAAATTTTAAAAAATCCCGAACCAC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15367486 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAGGCATAAAAA
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAA
* * ** * * *
15367551 TGGTACTGGCACACAGAAATATGAAGATGTGCCTAAACTCACGTACCACCCTATCGATCCATGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** * * *
15367616 TTGCACATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCTG----CCCGGTCGCTCGTTTTGTTGG
644 TTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGG
* ** * * *
15367677 TTGGATTAGGCATACAAAGTTCATTCCTAGTCTAAGATCGGACC-GAAATGAGGGTTACGACAGC
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGCGACAGC
** ** * ** * * * *
15367741 AGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGTC
773 AGGATCAGTAGCACACAGAGGGGGACACGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * ** *
15367806 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTAACTTACACATACGGAGTTCATTCCC-A-GT--
838 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * **
15367867 G--TA---AG---A-T--C-G-----GATTGGACC--A--AGGGCTGCGATAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCGGCAGCACATGCTGGGC
* * *** * *
15367911 TCGAGCATGTGCTGGTGCCGCATTTTTATTCGTTGGGGCACC--TAGTCGGAGCATCGCTGGAGA
66 TCGA-CATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATTA-CCGGAGCATCGCCGGAGA
* * ** ** *
15367974 ACCTGACCA-TTGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
129 ACCTGA-CAGATGGCATTGGGGTTCTGACGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
15368038 GCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTAA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCA
* * * *
15368103 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTTCTACCAGTAGCCATTAAAGTATCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
15368168 TGGGGACACTTTGTTT-AAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAAGTTTTT
323 TGGGGACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
*
15368232 TGTGCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
15368297 AAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATC
452 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15368362 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCAATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15368427 CATTGGCATGTAGAAATATGAAGATATGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * ***
15368492 AGCAACTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTG
* * * * *
15368557 GCTTAGGCATACGGAGTTCATTCCCAATATAAGATTGGACCAGACTGAGGGTTTC-AGTAGCAGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGA-CAGCAGG
** ** * * * *
15368621 ATCAACAGCACGTAGAGGGGGAC-CCGACTGATCCTCAGCTTGCGCATCCCGCCCTTCTGGCCGA
776 ATCAGTAGCACACAGAGGGGGACACGGTC-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
15368685 CTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * *
15368748 GCATACGAAGTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
15368813 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCAGAGA
65 CTC-GACATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATTACCGGAGCATCGCCGGAGA
* * * *
15368878 ACCTGGCCGATGGCATTGGGGTTCTGACGATCAGGGGGGCCGAGGGGGGGTGTCCGCACATGATG
129 ACCTGACAGATGGCATTGGGGTTCTGACGATTAGGGGGGCC--GGGGGGGTGTGCGCACATGATG
*
15368943 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAA-AACT
*
15369007 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
15369072 AATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAACTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
*
15369137 TTGTGCATGCCAAAAAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
386 TTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* *
15369202 AAAAATTTTAAAAAATCTCGAACCACAAGAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
15369267 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAAATTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15369332 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCACGGTT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
15369397 TGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCTACCCGCCCACTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGT
** * * *
15369462 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACCAGACCAAGGGTAGCGGCAGTA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACTGAGGGTTGCGACAGCA
* * * *
15369526 GGATCGGTAGCACACAGAGGGGGACACGGTCGATCCTCGGATTGCGCATCCCGCCCCTTTTGGTC
774 GGATCAGTAGCACACAGAGGGGGACACGGTCGATCCTCGGCTTGCGCATCCCGCCCC-TCTGGCC
* * * * *
15369591 GGCTGAGCGCCTGCACGTTCGCTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAATCTAA
838 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
** * * * * *
15369656 GCATGTGGAGTTCATTGCCAGTCTAAGATTGGACCGGATCGACGGTTGTGAG-AGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCG-GCAGCACATGCTGG
* * *
15369720 GCTCAGACATGTGCTGGCGCCACATTTTTCTTTGCCAGGGCACCATTACCAGAGCATCGCCGGAG
64 GCTC-GACATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATTACCGGAGCATCGCCGGAG
* * *
15369785 AACCTTACAGATGGCATTGGGGTTCTGACGATTAGGGGGGCC-GGGTGGTGTGCGCAGATGATGT
128 AACCTGACAGATGGCATTGGGGTTCTGACGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
15369849 GGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCA
* *
15369914 CACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
15369979 TAGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACCTCAAGTTTTTGGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * *
15370044 GTGCATACCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCGAAACAT-C-TTCTGAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTTC-GAA
* * **** *
15370107 AAAATTTTAAAAACTCTCGAATTGTAAAAAGTTTCAAAAATC-TCAAAAAATAGAAAACGAGTCG
451 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGT-GAAAAATAGAAAACGAGTCG
* *
15370171 TCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
15370236 GGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * *
15370301 TGCGCATCCCGTTTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCATTCGTTTTGTCGGT
645 TGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGT
* * * * *
15370366 TGGCTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTT-CTGATAGCA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GACAGCA
* ** * * *
15370430 GGATAAGTAGCACACA-ATGGGGGACATAGTCGATCCCCGGCTTGTGCATCCCGCCCCTCGGGCC
774 GGATCAGTAGCACACAGA-GGGGGACACGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * * *
15370494 GATTGAGCACTCGTATGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * *
15370559 G-AT-C-G-G---A---CC-G-----GA-CTG---AG--GA---TTGTGGCAGCACATGCTAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * *
15370599 TCGGGCATGTGCTGGTGTCGCATTTCTCTTCGCCAGGACACCATCACCGGAGCATCGTCGGAGAA
66 TC-GACATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATTACCGGAGCATCGCCGGAGAA
* * * * * * *
15370664 TCTGACCGACGACATTCGGGTTCTGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATATGC
130 CCTGACAGATGGCATTGGGGTTCTGACGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
15370728 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC-
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACA
**
15370792 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAACAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
**
15370857 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * *
15370922 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-TGGCACAAGAAATCCTTTCGAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAA-AACTCCTTTCGAAAA
* * *
15370986 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15371051 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
15371116 ATTGGCATGCAGAAATATGAAGATGAAACC-AAACCCACCTACCACCCTATCGATCCACGGCTTG
583 ATTGGCATGCAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * * **
15371180 CTTATCCCGTCTTTCTGGCCGACGTAGTGACCGCCCGCCAACCCG----CTCGTTTCGTCAATTG
647 CGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTG
* * * *
15371241 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCGACAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAGGA
* * * * ** * * *
15371306 TCGGAAGCACGCAGAGGGGGACCCGACCGATCC-CTGGCTTACGCATCCCACTCCTCTGGCCTG-
777 TCAGTAGCACACAGAGGGGGACACGGTCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCC-GA
* *
15371369 CTAAGCGCCCGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
840 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
15371432 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCGGCAGCACATGCTGGG
* * * *
15371497 CTCGAGCATGTGCTGGCGCCACATTTTTCTTCGTC-GGGACACTATTGCCGGAGCATCGTCGGAG
65 CTCGA-CATGTGCTGGTGCCACATTTTTCTTCGCCAGGG-CACCATTACCGGAGCA---TC---G
* * * * *
15371561 CATCGTCGAAGAACCTGACCA-ACGGCATTGGGGTTCCGACGA-TCGAGGGGGCCGAGGAGGTGT
122 C--CG--G-AGAACCTGA-CAGATGGCATTGGGGTTCTGACGATTAG-GGGGGCCGGGGGGGTGT
* ** *
15371624 GCGCACATGATGTGTGATGGGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAA
180 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
15371689 CC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCAT
245 CCTTGAA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
15371753 TAAAGTG-ATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
309 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
15371812 AGCATTTGAG
Statistics
Matches: 4155, Mismatches: 558, Indels: 252
0.84 0.11 0.05
Matches are distributed among these distances:
872 1 0.00
873 271 0.07
874 155 0.04
875 207 0.05
876 224 0.05
877 625 0.15
878 7 0.00
879 1 0.00
880 4 0.00
881 1 0.00
882 7 0.00
883 5 0.00
886 3 0.00
887 3 0.00
888 1 0.00
889 2 0.00
890 4 0.00
891 1 0.00
892 2 0.00
893 5 0.00
894 2 0.00
896 3 0.00
897 2 0.00
898 10 0.00
899 60 0.01
900 4 0.00
901 344 0.08
902 150 0.04
903 390 0.09
904 420 0.10
905 213 0.05
906 210 0.05
907 387 0.09
908 212 0.05
909 2 0.00
910 31 0.01
911 133 0.03
912 53 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCGGCAGCACATGCTGGGC
TCGACATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATTACCGGAGCATCGCCGGAGAAC
CTGACAGATGGCATTGGGGTTCTGACGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAGGATCAG
TAGCACACAGAGGGGGACACGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:15371436 original size:26 final size:26
Alignment explanation
Indices: 15371406--15371458 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15371396 TTTGACTTAG
*
15371406 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15371432 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15371458 G
1 G
15371459 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15372621 original size:26 final size:26
Alignment explanation
Indices: 15372584--15372634 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15372574 GTTGACTTTG
*
15372584 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15372610 GCATACTG-AGTTCATTCCCAGTCTA
1 GCATAC-GAAGTTCATTCCCAGTCTA
15372635 GGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15373297 original size:12 final size:12
Alignment explanation
Indices: 15373280--15373305 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15373270 ATGTAGTGCC
15373280 CGCCCGCCCGTT
1 CGCCCGCCCGTT
15373292 CGCCCGCCCGTT
1 CGCCCGCCCGTT
15373304 CG
1 CG
15373306 TTTCATCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.58, G:0.27, T:0.15
Consensus pattern (12 bp):
CGCCCGCCCGTT
Found at i:15374431 original size:151 final size:155
Alignment explanation
Indices: 15374146--15374505 Score: 392
Period size: 151 Copynumber: 2.3 Consensus size: 155
15374136 ACGCCCGCCT
* * * * *
15374146 GCTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATTGGACCAGACTGA
1 GCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGA
** * * * * *
15374211 GGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGTCGATCCCCGACTTGCGCATCT
66 GGGTTACGGCAGCAGGATCGACAACACGCAGAGGGGGACCCACTCGATCCCCGACTTGCGCATCC
*
15374276 CA-CC-CC-ACTGAGC-GAATG-CAC
131 CACCCTCCGACTG-GCTGAACGCCAC
*
15374297 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TCG
1 GCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-G
* * * * * *
15374361 AGGGTTACGGTAGTAGGATCGACAACACGCAGAGGGGGACCCGACT-GATCCCTGGCTTGTGTAT
65 AGGGTTACGGCAGCAGGATCGACAACACGCAGAGGGGGACCC-ACTCGATCCCCGACTTGCGCAT
* *
15374425 CCCACCCCTCCGGCTGGCTGAGCGCCCACAC
129 CCCA-CCCTCCGACTGGCTGAACG--C-CAC
* *
15374456 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAG
1 GCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15374506 CATACGGAGT
Statistics
Matches: 173, Mismatches: 25, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
150 1 0.01
151 108 0.62
152 2 0.01
153 2 0.01
154 4 0.02
155 6 0.03
159 50 0.29
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
GCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGA
GGGTTACGGCAGCAGGATCGACAACACGCAGAGGGGGACCCACTCGATCCCCGACTTGCGCATCC
CACCCTCCGACTGGCTGAACGCCAC
Found at i:15374515 original size:26 final size:26
Alignment explanation
Indices: 15374479--15374531 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15374469 GTTGACTTAG
*
15374479 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15374505 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15374531 G
1 G
15374532 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15375416 original size:26 final size:26
Alignment explanation
Indices: 15375380--15375431 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15375370 TTGACTTAGT
15375380 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15375406 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15375432 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15376273 original size:25 final size:26
Alignment explanation
Indices: 15376245--15376295 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
15376235 GGTGACTTAG
15376245 GCATACAGAGTTCATT-CTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15376270 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15376296 CATCGGATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15376805 original size:16 final size:16
Alignment explanation
Indices: 15376784--15376817 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
15376774 CTTGCCATAA
15376784 AATTGTATGAATTTAC
1 AATTGTATGAATTTAC
15376800 AATTGTATGAATTTAC
1 AATTGTATGAATTTAC
15376816 AA
1 AA
15376818 GCCATAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (16 bp):
AATTGTATGAATTTAC
Found at i:15378046 original size:26 final size:26
Alignment explanation
Indices: 15378010--15378062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15378000 GTTGACATAG
15378010 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
15378036 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15378062 G
1 G
15378063 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15379498 original size:903 final size:899
Alignment explanation
Indices: 15375929--15380610 Score: 5690
Period size: 902 Copynumber: 5.2 Consensus size: 899
15375919 CAATTGTAAC
* * * *
15375929 AATTTACGAGCAATAAAATTGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCTCCTAC
1 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
15375994 CACCCTAT-GAACCCACGGCTTGCCCATCCCGACTCTCTGGCCGACGTAGTGCCCTCTCGCCCGT
66 CACCCTATCG-ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-C-CGCCTGC
* * *
15376058 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAAGGAGTTCCTTCCCAGTCTAAGATCGGACCA
127 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * ** * * ** * *
15376123 GACCGAGGGTTACGGTAGCAAGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCTCGGCTTGC
192 GACTGAAGGTTGTGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGT
* ** * * * * ** *
15376188 GTATCCCATCCCTCTGGTCAGTTGAGCACCCGCACACTCGTTTCACGGG-TGACTTAGGCATACA
256 GCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-AAA
* * *
15376252 -GAGTTCATT-CTAGTCTAAGCATAC-AGAGTTCATTCCTAGTCTAACATCGGA-TCAAACCGAG
320 GGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCTAGTCTAAGATCGGACT-AGACCGAG
* * * * * **
15376313 GGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCCTCATGGCACC
383 GGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * *
15376378 A---T-----CA-C--CGGAGAACCTGACTGACGGCATTAGGGTTCCGACGATC-GGGGGGACGG
448 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGG
* * * * *
15376431 GGGGGGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCGTATATTGGCCCCCCATCCCT
513 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
15376496 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGT
578 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
15376561 AGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
643 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
*
15376626 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
708 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
* * * ** *
15376691 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAGCCGTAAAAAGTTT-TGAAAATAATGA
773 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCT-AAAATCATGA
* * * * *
15376755 AAAATAGAAAACGAATCGTCTTGCCAT-AAAATTGTA--TGAA---TT----TACAATTGTATG
837 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-CACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
15376809 AATTTACAAGCCATAAAATTCGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA-CCATCCAA
1 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA-CCTA
* * * * *
15376873 CCACCCTATCAACCCACGGCTTGCCCATCCCGACTCTCTGGCCGACGTAGTGCCCGCCCGCCCGT
65 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCCG-CC-T
*
15376938 CCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGA
125 --G--C--CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * ** *
15377003 TCAGACCAGACCGAGGGTTGCGGTAGCAAGATCGGTAGCACATAGAGGGGGACCCGGCTGATCCC
184 TCAGACCAGACTGAAGGTTGTGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGGCCGATCCC
* * * * *
15377068 CGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTA
248 CGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * * *
15377133 GGCACACGGAGTTCATT-CCAATCTAAGCATGC-AGAGTTCATTCCCAGTCTAACATCGGA-TCA
313 GGCAAAAGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCTAGTCTAAGATCGGACT-A
* * * *
15377195 AACCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCG
376 GACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCG
* *
15377260 GGGCA-C--CGT-------T-GTCGGAGAACCTGACTGGCGGCATTAGGGTTCCGATGATCGGGG
441 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGG
* * *
15377314 GGACC-GGGGG-ATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCC
506 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
15377377 CATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
571 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15377442 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTAC
636 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
15377507 ACTTTGAGTTTTTAGCTAAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACT-TCTACCA
701 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCA
* *
15377571 AGTTTGGGGCC--AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTT-TGAA
765 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCTAAA
*
15377633 ATCATGAAAAATTGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATT
830 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
15377697 GTATG
895 GTATG
* * * *
15377702 AATTTACAAGCCATAAAAATGGCATTGACACGCAGAAATACGAAGATGTGCGTAAACCCTCCTAC
1 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
** * * ** * *
15377767 CACCCTATTAATCCACAGCTTGCGCATCCCGTCTCTCTGGTC-GAATAGTG-CCCG--T--TCGT
66 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCTGCCCGC
* * * * *
15377826 CCGCTAGTTTCATCAGTTGGCTTAGGCATACGAAGTTCATTCCCATTCTAAGATCAGACC-GAAT
131 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
* * *
15377890 CG-AGTGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTT-TCA
196 -GAAG-GTTGTGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGT-G
* * * * *
15377953 CATCCCGCCCCTCTGGCCTGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACATAGGCATACGG
257 CATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAAAGG
* * * *
15378018 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTT
322 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTT
* * * *
15378083 GCGGCAGCACATGCTAGGCTCG-GACATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
387 ACGGCAGCACATGCTAGGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
* * ** * * *
15378147 GCCGGAGCATCGTCGAAGAACAAGACCGGTGGCTTTGGGGTTCCGACGATCGGGGGGGCCGGGGG
451 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGG
*
15378212 GGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
515 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
15378277 TCAAACCTCAAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAG
580 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
** * *
15378342 CCATTAAAGTGTCTGAAATGGGGACGTTTTTTTCAAATCGTCACAAAATCTTGTACAATTTGAGT
645 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
*** **
15378407 TTTTAGCTGAATTTTTTTGTG-ATTGCCAACAAAAATACAAGGATCATGTCGGGCAAGTTTGTTG
710 TTTTAGCTGAATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
* **
15378471 CCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCCGAACCTTAAAAAGTTTCTAAAATCATG-AA
774 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCTAAAATCATGAAA
* * * *
15378535 AATAAAAAATGGGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATG
839 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
15378596 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
1 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
15378661 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGACCGCCTGCCTGCC
66 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CC-GCCTGCC
* ** * * * **
15378726 CGTCCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCACAATCTAAGATTGGACCAG
128 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * ** *
15378791 ACTGAAGGTTGTGGCAGCAGGATCAGCAGCACGGAGTGTGGGACCCGGTTGATCCCTGGCTTGTG
193 ACTGAAGGTTGTGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTG
* * * *
15378856 CATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGGTCATTTCGTGGGTTAACTTAGGCAAAAGG
257 CATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAAAGG
* * * * *
15378921 AGGTCATTCCCAGTATAAGCATACGAAATTCATTCCTAGTCTAAGATCGGACTGGACCGAAGGTT
322 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTT
* * * *
15378986 ACGGCACCACATGTTGGGCTCGAGCATGTACTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
387 ACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
* * * *
15379051 TCGGAGCATCATCGGAGAACCTGACCAGCGGCATTAGGGTTCTGACGATCGGGGGGGCCAGGGGG
452 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
15379116 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATC
517 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
15379181 AAACCTTAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
582 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
15379246 ATTAAAATGTCTAAAATTGGGACACTTTTTTCAAATGGCCATAAAATCTTGTACACTTTGAGTTT
647 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* * * **
15379311 TTAGCTGAAGTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGTGA
712 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
* * *
15379376 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAGAAAAAGTTTCAAAAATCCTGAAAAAT
777 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCTAAAATCATGAAAAAT
15379441 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
842 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
15379499 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
1 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
15379564 CA-CCTATCGATCTACGACTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACACGCCCGCC
66 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-C-CGCCTGCC
* * * * * ** *
15379628 CACCCGCTCGTTTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCATTCTAAGATTGGATCA-
128 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
15379692 AATCGAGGGTTGTGGCAGTAGGATCGACAACACGCAGGAGGGGGACCCGGACGATCCCCGGCTTG
193 ACT-GAAGGTTGTGGCAGCAGGATCG-CAGCACGCA-GAGGGGGACCCGGCCGATCCCCGGCTTG
* * * * * * * * *
15379757 CGTAGCTCGCCCATCTGGCCTGCTGAGCGCCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATAC
255 TGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-AA
* * * * * *
15379822 A-GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCAGACCAGACCGAGG
319 AGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGG
* * * * * ** * *
15379886 GTTGCCGCAGCATAT-CTAGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACAA
384 GTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA
* * * ** *
15379950 TCGTCGGAGCAACGTCAGAGAACCTGACCGGCGACATTAGGGTTTTGGCGATCGGGGGGGCCGGG
449 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGG
*
15380015 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
514 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
** * * * * * *
15380080 ATCAAACCTTGAGAACTCACAGCCTCTCAAATAGCATTTGAGATTTTACAAGTTTGCTGCCATTA
579 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
15380145 GCCATTAAAGAGTTTGAAATGGGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAG
644 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
* *
15380210 TTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
709 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
* * * * * *
15380275 CAAAAAATCCTTTCAAAAAAATTTTAAAAAGTCCCGAACCACAAAAAGTTTCCAAAATCATGAAA
774 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCTAAAATCATGAAA
*
15380340 AATAGAAAACGAGAT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATG
839 AATAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
15380401 AATTTAAAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTAC
1 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
15380466 CACCCTATCGATCCATGGCTTGCACATCCCATCTCTCTGGCCGGCATAGT-CCCCG-CTCGCCCG
66 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCT-GCCCG
* * * *
15380529 CCCTCTCGTTTCATTGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGAC
130 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
*
15380594 -CAAGGGTTGTGGCAGCA
195 TGAA-GGTTGTGGCAGCA
15380611 CATGCTGGGC
Statistics
Matches: 3322, Mismatches: 395, Indels: 151
0.86 0.10 0.04
Matches are distributed among these distances:
875 5 0.00
876 168 0.05
877 98 0.03
878 1 0.00
879 2 0.00
880 108 0.03
881 5 0.00
882 1 0.00
884 2 0.00
885 34 0.01
886 49 0.01
887 5 0.00
888 454 0.14
889 167 0.05
890 14 0.00
891 237 0.07
892 5 0.00
893 186 0.06
894 123 0.04
895 6 0.00
897 1 0.00
898 4 0.00
899 70 0.02
900 2 0.00
901 6 0.00
902 938 0.28
903 621 0.19
904 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (899 bp):
AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCTGCCCGC
CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
GAAGGTTGTGGCAGCAGGATCGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATC
CCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAAAGGAGTT
CATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTACGG
CAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGG
AGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCTAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
Found at i:15379852 original size:26 final size:26
Alignment explanation
Indices: 15379816--15379866 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15379806 GTTGACTTAG
*
15379816 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15379842 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
15379867 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15381439 original size:26 final size:26
Alignment explanation
Indices: 15381403--15381455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15381393 GTTGACTTAG
15381403 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
15381429 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15381455 G
1 G
15381456 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15382025 original size:26 final size:26
Alignment explanation
Indices: 15381989--15382041 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15381979 GTTGACTTAG
* *
15381989 GCATACGGAGTTGATTGCC-AGTCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
15382015 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15382041 G
1 G
15382042 ATAGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15383811 original size:26 final size:26
Alignment explanation
Indices: 15383775--15383827 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15383765 GTTGACTTAG
*
15383775 GCATAGGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15383801 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15383827 G
1 G
15383828 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15384708 original size:26 final size:26
Alignment explanation
Indices: 15384669--15384721 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15384659 GTTGACTTAG
*
15384669 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
*
15384695 GCATACGAAATTCATTCCTAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
15384721 G
1 G
15384722 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:15386018 original size:888 final size:888
Alignment explanation
Indices: 15381552--15388693 Score: 8116
Period size: 893 Copynumber: 7.9 Consensus size: 888
15381542 TGAAGTTTTG
* * *
15381552 AAAAGTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAAGTTTTAAAAATCGTGAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT-AAAAAGTTTTGAAAATCGTGAAAA
* *
15381617 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTT
65 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
15381682 ACAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
130 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * *
15381747 TATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGAGTAGTGACCGCTCGCCCGCCCCCTC
195 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTC
* ** *
15381812 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGA-CGGTACCGAGGG
260 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGG
* * * * *
15381876 TTACT-GTAGCAGGATCGGCAGCACGCATAGGGGGACCCGACCGATCCCCGGCATGCGCATCTCG
324 TT-GTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * * *
15381940 CCCCTCTGGCCGACTGAGC-ACCGCACACTCGTTCCATGGGTTGACTTAGGCATACGGAGTTGAT
388 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
15382004 TGCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGAT-AGGACCAGACCGAGGGTTGCAGCA
453 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCGGCA
*
15382068 GCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGA
517 GCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGA
* * *
15382132 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTGCC-GGGTGGTGTGCGCACATGATG
581 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAGATGATG
*
15382196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTC
646 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15382261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTC-CAG
710 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-
*
15382325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTT
774 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
15382390 TTGTGCATGCCAACAAAAATACAGGGATCAGGTCTACCAAGTTTGGGGCC
839 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
15382440 AAAACTGCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGTTTTGAAAATCATGAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAA
*
15382505 TAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * ** * * * *
15382570 CAAGTCATAAAAATGGAATTGGCACACACAAATACGAAGATGTGCCTAAACCCACCTACCTCCTT
131 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
15382635 ATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCTGCCCATCCGCCC-TCTC
196 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CGC--CCGCCCGTC-C
* * * *
15382699 GCTCATTTCGTCGGTTGGCTTAGGCATCCGGAGTTCATTCCCAGTCTAAGAGCACA-CACGAACC
256 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-G-ACC
* * * * * *
15382763 GAGGGTTGCT-GCAGCAGGATTGGCAGCACGTAAAGGGGGACCCGGCCGATCCCCGACTTGGGCA
319 GAGGGTTG-TGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * * * * *
15382827 TCCCACCTCTCTGGCCGGCTGAGCACCCGTACGTTCGTTTTATGGGTTGACTTAGGAATACGGAG
383 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * ** * * * *
15382892 TCCATTCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTCC
448 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
*
15382957 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCC
513 GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCAT----
* * *
15383022 GGAGCAACGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTT
574 -------CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* * *
15383087 GTGTGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCA
632 GTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCA
* *
15383152 AACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
696 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
15383217 TTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTT
761 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* ** * * *
15383282 TAGCTGAATTGTTTTT-TGCATGCCAACCAAAATACAAGGATCACGTCTATTATGCTTAGGGCC
826 TAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
15383345 AAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGT-AACA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAA-A
* * *
15383408 AATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATT
64 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
15383473 TACAAGCCATAAAAATGGCATTGGCACGTAGAAAGTATGAAGATGCGCCTAAACCCACCTACCAC
129 TACAAGCCATAAAAATGGCATTGGCACGTAGAAA-TATGAAGATGTGCCTAAACCCACCTACCAC
* * **
15383538 CCTATCGATCCATGGCTTGCGCATTCCGTCTCTCTGGCCGGCGTAGT----GTACGCCC-T---C
193 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGC
* * *
15383595 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGG
258 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * * *
15383660 GTTGCGGCATCAGGATTGGCAGTA-GAAAGCGGGGGACCCGACTGATCCCCGGCTTGCGCATCCC
323 GTTGTGGCAGCAGGATCGGCAGCACG-CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * *
15383724 GCCCCTCTGGCCGGCTGAGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCA
387 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * *
15383789 TTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACA
452 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
* * *
15383854 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAG
517 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG---CA----C----
* * *
15383919 CATCGCCGGAGAACTTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGC
571 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* *
15383983 GCACG-TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAAC
636 GCA-GATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAC
* ** * *
15384047 CTCGAGAACTGACACCGACTTAAAGAGCATTTGAGATTTTACTGGTTTGCGGCCAGTAGCCATTA
699 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
15384112 AAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACCTCGAGTTTTTGG
764 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * ** *
15384176 CTGAATTTTTTCGTGCATGCCAACAAAAATACAAGGATCACAG-CTACTATTTTTAGGGCC
829 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCC
* * * * * * *
15384236 AAAACTCATTCTGAAAAAATTTTAAAAAAT-CTCGAACTGCAAAAAGTTTTAAAAATTGTAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAA
*
15384300 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTT
65 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
15384365 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACCC
130 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
15384430 TATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCGGCATAATACCCGCCCGCCCGTCTGCCT
195 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--T-CC-
* * * * *
15384495 GCTCGTTTTGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGATCGGACCG
256 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCG
** ** * ** *
15384559 AGGGTTGCAGCAGCAGGATCGATAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATC
320 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * *
15384624 CCG--CC-C---CC--CTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
385 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * * * *
15384681 CATTCCCAGTCTAAGCATACGAAATTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGG
450 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * ** ** * *
15384746 CAGCACATGCTGGGCTTGGGCATGTTCTGGTGCCACATTTTTCTTTTTCAGGGTACCATCGCCGG
515 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGG
* * *
15384811 AGCATAGCCGGAGTACCTGATCGGCGGCATTGGGGTTCCGATGATCGGGGGGGGCCAGGGGGGTG
580 AG-A-A-CC--TG-ACC-GA----CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGGTG
* *
15384876 TGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAA
633 TGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAA
*
15384941 ACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
697 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
15385006 TAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
762 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
15385071 GGCTGAATTTTTTAGTGCTTCCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCC
827 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * **
15385133 AAAAATCCTTCCGAATATATTTTAAAAAATCCTGAACCGTAAGAAGTTTCAAAAATCGTGAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAA
*
15385198 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
15385263 CAAGCCATAAAAGTGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACTCACCTACCACCCT
131 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
15385328 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTACTGCCCACCCGCCCGTCCGCTCG
196 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCG
* * * * *
15385393 TTTCGTCGATTGGCTCAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTT
261 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * * * *
15385458 GTGGTAGCAGGATCGACAGCGCGTAGAGGAGGACCCGACAGATCCCCGACTTGCACATCCCGCCC
326 GTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * ** * ** *
15385523 CTCTGGCCGACTGAACGTGCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCC
391 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
15385588 CAGTCCAAGCATACGGATTTCATTCCCAGTCTAAAATCGGACCAGACTGAGGGTTGCGGCAACAC
456 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAC
* * * * *
15385653 ATGCTGGGCTCGAGCATGTGTTGGTGCCGTATTTTTTTTCACCGAGGCACCATCGCCGGAGTACC
521 ATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAACC
* ** * * ** * *
15385718 T-ATCGGTGGCATTGGCGTTTCGGTGATCGGGGGGGCCGGGGGGAGTGTGCACAGATGATGTGCA
586 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCAGATGATGTGCG
* *
15385782 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
650 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
15385847 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
715 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
15385912 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGC
780 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
15385977 ATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCC
845 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
15386021 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAATCACG--AAAAGTTTTGAAAATCGTGAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA-C-CGTAAAAAGTTTTGAAAATCGTGAAA
* * * * *
15386084 AATAAAAAACGATTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAATGGACTATTGTATGAATT
64 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
15386149 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCATC
129 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * **
15386214 CTATAGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCACC
194 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGTC
* * * * * * *
15386279 CGCTCTTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATTATACCAAACCG
255 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * *
15386344 AGGGCTATGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATC
320 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* *
15386409 CCGCCCCTCTGGCCGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
385 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
15386474 CATTCCTATTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
450 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * * ** *
15386539 CAGCACATGCTGAGCTC-AGGCATGTGCTGGTGCCGCATATTTCTTCATCGGGGCACCACCATCA
515 CAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCG
* * * *
15386603 GAAAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCCGGGTGGGTGTGCGC-GCATG
579 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAG-ATG
* * *
15386667 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCACTCATCAAACCTCAAGAA
643 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAA
15386732 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
707 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
15386797 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
772 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
15386862 TTTTGCGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCC
837 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
15386914 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAATCACG--AAAAGTTTTGAAAATCGTGAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA-C-CGTAAAAAGTTTTGAAAATCGTGAAA
* * * * *
15386977 AATAAAAAATGATTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAATGGACCATTGTATGAATT
64 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
15387042 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCATC
129 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * **
15387107 CTATAGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCT
194 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCT
* * * *
15387172 CTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTACACCAAACCGAGGG
259 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* ** * * * *
15387237 CTACGGCAGCAGGATCGGCAGCACACAGAGGGAGACCCGACCGATCCCCGACTTGCGTATCCC-C
324 TTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
*
15387301 CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
389 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
15387366 CCTAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGC
454 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * ** *
15387431 ACATGCTGAGCTC-AGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCACCATCAGAGA
519 ACATGCTGGGCTCGA-GCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGA
* * * **
15387495 ACCTGACCGACAGCATTGGGGTTCCGACGATCGAGGGGCCCGGATGGGTGTGCGC-GCATGATGT
583 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAG-ATGATGT
* *
15387559 GCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCGCTCATCAAACCTCGAGAACTCA
647 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15387624 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
711 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** **** * * ** * *
15387689 TGTGGACACTTTTTTCAAATGGAGATTTTACCGGTTTGCTGGCAGTGCCATTAAAGTGTCT-GAC
776 TGGGGACACTTTTTTCAAATGGTCACAAAATC---TTG-T-ACA----C-TTCGAGTTTTTAG-C
* *** * ** * * *
15387753 ATGGGGACACTTTTTT-CAAATGGTC-AC-AAAAT-CTTGTA-CACTTTGAGTTTTTAGCTGATT
830 -T---GA-ATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCAC-----G--TCTA-C-CA--
** *
15387813 TCTTTTGTGCATGCCAC
878 -AGTTTG-G---GGC-C
* *** ** * * * * ***
15387830 AAAAAATAAAAGGATCACGCCTACCAAGTTTGGATCCAAAACTCCTTCCAAAAAAATTTAAAAAA
1 -AAAACT----CCTTC-CG---AAAAAATTT---T-AAAAAATCC-T-----GAACCGT-----A
* * * *
15387895 ATCCCAAATCGTAAAATGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCATCTTGCCATCAAAC
42 A----AAA--G-------TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
15387960 TTCACATGAAGGCTTCAA-GGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
94 TTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * * *
15388024 AGAAATACGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTC
158 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * **
15388089 TCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACAAA
223 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * ** ** *
15388154 GTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGTACCAGGAACGATAGCACATAAA
288 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGA
* ** ** * ** * * *
15388219 GGGGGACTCGGTCGATCCCTAGCTTACGCATCCATCCCCTCTGGCAGGCTGAGTGCCCGTACGCT
353 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * *
15388284 CGTTTTATGGGTTAACTTAGGCATACCGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCC
418 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** * *
15388349 AGTCTAAGATCGGACTTGACCAAGGGTTGTGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTG
483 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTG
* *
15388413 CCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCAGAGCATCATCAGAGAACCTGAT
547 CCGTATTTTTCTTCATCGGGGCACCATCGCC-G-G-A--G--A-A-C--C-T----G-A-C----
* * * * * *
15388478 CGACGGCATTAGGGTTCAGGCGACCGGGGGGG-C-GGGGGGTGTGCGC-GCATGATGTGTGGTGG
590 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAG-ATGATGTGCGATGG
* * * * * * * *
15388540 GTACTTGTACTTGGCCCTTATATTGGCCCCCTATCACTGATCAATCCTTGAGAAGTCACAACCCC
654 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
15388605 TTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
718 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
15388670 AGTTTGTTCGAATGGTCACAAAAT
783 ACTTTTTTCAAATGGTCACAAAAT
15388694 ATTATACTCT
Statistics
Matches: 5421, Mismatches: 638, Indels: 304
0.85 0.10 0.05
Matches are distributed among these distances:
883 11 0.00
884 1 0.00
885 1 0.00
886 1 0.00
887 183 0.03
888 855 0.16
889 205 0.04
890 81 0.01
891 305 0.06
892 559 0.10
893 983 0.18
894 231 0.04
895 8 0.00
896 151 0.03
897 326 0.06
898 18 0.00
899 8 0.00
900 5 0.00
901 157 0.03
902 115 0.02
903 12 0.00
904 53 0.01
905 377 0.07
906 79 0.01
907 1 0.00
908 1 0.00
911 4 0.00
912 1 0.00
915 2 0.00
916 1 0.00
917 5 0.00
921 2 0.00
922 2 0.00
925 6 0.00
928 1 0.00
929 6 0.00
930 1 0.00
935 2 0.00
940 1 0.00
944 3 0.00
946 1 0.00
953 293 0.05
954 170 0.03
956 1 0.00
957 1 0.00
959 1 0.00
961 1 0.00
962 1 0.00
963 1 0.00
965 1 0.00
966 1 0.00
970 1 0.00
971 1 0.00
972 1 0.00
973 1 0.00
974 155 0.03
975 1 0.00
976 25 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
GTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAC
ATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAGATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
Found at i:15386494 original size:26 final size:26
Alignment explanation
Indices: 15386464--15386514 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15386454 TGACTTAGGC
* *
15386464 ATACGGAGTTCATTCCTATTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
15386490 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15386515 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:15387382 original size:26 final size:26
Alignment explanation
Indices: 15387352--15387402 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15387342 TGACTTAGGC
*
15387352 ATACGGAGTTCATTCCTAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
15387378 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15387403 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:15387768 original size:66 final size:66
Alignment explanation
Indices: 15387644--15387775 Score: 212
Period size: 65 Copynumber: 2.0 Consensus size: 66
15387634 AAGAGCATTT
*
15387644 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGTGGACACTTTTTTCAAAT
1 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
15387709 G
66 G
* * * *
15387710 GAGATTTTACCGGTTTGCTGGCAGT-GCCATTAAAGTGTCTGACATGGGGACACTTTTTTCAAAT
1 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
15387774 G
66 G
15387775 G
1 G
15387776 TCACAAAATC
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
65 38 0.62
66 23 0.38
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (66 bp):
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
G
Found at i:15388341 original size:26 final size:26
Alignment explanation
Indices: 15388304--15388356 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15388294 GTTAACTTAG
15388304 GCATACCGAGTTCATTCCCAATCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
*
15388330 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATACCG-AGTTCATTCCCAATCTAA
15388356 G
1 G
15388357 ATCGGACTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAATCTAA
Found at i:15388453 original size:11 final size:11
Alignment explanation
Indices: 15388437--15388462 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15388427 GTCGGGGCAC
15388437 CATCGCCAGAG
1 CATCGCCAGAG
15388448 CATCGCCAGAG
1 CATCGCCAGAG
15388459 CATC
1 CATC
15388463 ATCAGAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:15390217 original size:26 final size:26
Alignment explanation
Indices: 15390188--15390240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15390178 GTTGACTTAG
15390188 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
15390214 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15390240 G
1 G
15390241 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15391095 original size:280 final size:281
Alignment explanation
Indices: 15390552--15391113 Score: 783
Period size: 280 Copynumber: 2.0 Consensus size: 281
15390542 ATGGTCATAA
*
15390552 AATCTTGTACACTTTCAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGAAACAAGGATCA
1 AATCTTGTACACTTTCAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGAAACAAGGATAA
* *
15390617 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
66 CGTCTACAAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
15390682 GTTTTAAAAATCATAAAAAATAGAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
131 G-TTCAAAAATCATAAAAAATAGAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * ** * *
15390747 GGACCATTGTATCAATTTACAAGCCATAAAAGTGGCATTGGGATGCAAAAGTATGAAGATGTGCC
195 GGACCATTGTATCAATTTACAAGCCATAAAAATAGCATTGGCATGCAAAAGTAAAAACATGCGCC
15390812 TAAACCCACCTACCACCCTATC
260 TAAACCCACCTACCACCCTATC
* * * * *
15390834 AATCTTGTACAC-TTCGAGTTTTTAGGTGAATTTTTTTTTGCATGCCAATAAA-AATACATGGAT
1 AATCTTGTACACTTTC-AATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGAA-ACAAGGAT
* * * *
15390897 AACGTCTTCAAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGTACCG-CAA
64 AACGTCTACAAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * ** * * *
15390961 TA-TTCCAAAATTGTGAAAAATAGAAAACGAGTTGTCTTGCCATTAAACTTCACGTGAAGGCTTA
129 AAGTTCAAAAATCATAAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
15391025 AGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCAGAAA-TAAAAACATGC
193 AGGGACCATTGTATCAATTTACAAGCCATAAAAATAGCATTGGCATGCA-AAAGTAAAAACATGC
15391089 GCCTAAACCCACCTACCACCCTATC
257 GCCTAAACCCACCTACCACCCTATC
15391114 GATCCACAAC
Statistics
Matches: 247, Mismatches: 29, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
279 16 0.06
280 114 0.46
281 11 0.04
282 106 0.43
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.27
Consensus pattern (281 bp):
AATCTTGTACACTTTCAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGAAACAAGGATAA
CGTCTACAAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
GTTCAAAAATCATAAAAAATAGAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATCAATTTACAAGCCATAAAAATAGCATTGGCATGCAAAAGTAAAAACATGCGCCT
AAACCCACCTACCACCCTATC
Found at i:15391404 original size:26 final size:26
Alignment explanation
Indices: 15391368--15391417 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15391358 ATAGGCATAT
*
15391368 GGAGTTTATTCCCAGTCTAAGATTAC
1 GGAGTTCATTCCCAGTCTAAGATTAC
*
15391394 GGAGTTCATTCCTAGTCTAAGATT
1 GGAGTTCATTCCCAGTCTAAGATT
15391418 GGACAGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAAGATTAC
Found at i:15392661 original size:11 final size:11
Alignment explanation
Indices: 15392645--15392670 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15392635 GTCGAGGCAC
15392645 CATCGTCGGAG
1 CATCGTCGGAG
15392656 CATCGTCGGAG
1 CATCGTCGGAG
15392667 CATC
1 CATC
15392671 ACCGGAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15393252 original size:888 final size:874
Alignment explanation
Indices: 15391477--15393452 Score: 2686
Period size: 888 Copynumber: 2.2 Consensus size: 874
15391467 GGTCCTCCCG
* * * *
15391477 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAGTCCTAGTCTAAGATC-AGACCAAA
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGA
** * * * * *
15391541 TCGAGGGTTGTGGCAGCAGGATCCGCAGCACATAGAGGGGGACCTGGTCGATCCCCGACTTACGC
65 TCGAGGGTTACGGCAGCAGGAT-CGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCAC
* * *
15391606 ATCCTGCCCCTCTAGCCGGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGACATAGGCATACGGA
129 ATCCCG-CCCTCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
15391671 GTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCAT
193 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGAGCAT
* * * **
15391736 GTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGGAGTATCGTCGAAGAACTTAACCA
258 GTGCTGGTGCCACAATTTTCTTCATCGAGGCACCATCATCGGAGCATCGTCGAAGAACCAAACCA
* * * *
15391801 GCGGTATTGGGGTTCCGATGATCGGGGGGGCCGGGAGGGTATGTGCACATGATGTTCAATGGGTG
323 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGTATGCGCACATGATGTGCAATGGGTG
* * * *
15391866 CTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCTTAA
388 CTGGTACTTAGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCTTAA
15391931 AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAACCATTAAAGTGTCTGAAATGGCGACACTT
453 AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAACCATTAAAGTGTCTGAAATGGCGACACTT
*
15391996 TTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAACTTTTTTGTGCATGCCAA
518 TTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAACTTTTTTGTACATGCCAA
* *
15392061 CAAAATACAAGGATCACGTCTACTAAGTTTGATGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAA
583 CAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAA
* *
15392126 TCTCGAATTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACT
648 TCTCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACT
* * *
15392191 TCACGTGAAGGCTTAAGAGACCACTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCGCACAA
713 TCACGTGAAGGCTTAAGAGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAA
* * * *
15392256 AAATACGAAGATGTACCTAAAGCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
778 AAATACGAAGATGTACCCAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCCATCTC
* * * *
15392321 TTTGGCCGATAGAGTGCCCGCCCGCCCGCCCG
843 TCTGGCCGAGAGAGTGCCCGCCAGCCCGCCCA
** **
15392353 CCCATTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCAGA-
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAT
* * * *
15392417 CAGAGGGTTACAGCAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCAC
66 C-GAGGGTTACGGCAGCAGGATC-GCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCAC
* * *
15392482 ATCCCACCCATCTAGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGA
129 ATCCCGCCC-TCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGA
* *
15392547 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACAGTAGCACATGCTGGGCTC-AGGCA
193 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGA-GCA
** ** *
15392611 TGTGCTGGTGCCGTAATTTTCTTTGTCGAGGCACCATCGTCGGAGCATCGTCGGAGCATCACCGG
257 TGTGCTGGTGCCACAATTTTCTTCATCGAGGCACCATCATCGGAGCATCGTC---G----A----
* * *
15392676 AGAACCAAACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGAT
311 AGAACCAAACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGTATGCGCACATGAT
*
15392740 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACT
376 GTGCAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACT
* * **
15392805 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCTAGTCGCCATTAAAGTGTCTGA
441 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAACCATTAAAGTGTCTGA
* * * * *
15392870 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTT
505 AATGGCGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAACTTTT
* * *
15392935 TTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAA
570 TTGTACATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAA
* * *
15393000 AAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
634 AAAAGTTTAAAAAATCTCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
15393065 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATG
699 CTTCCCATGAAACTTCACGTGAAGGCTTAAGAGACCACTATATGAATTTACAAGCCATAAAAATG
** * * * * *
15393130 GCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACTTACCACCCTATCAATCCACGGCTT
764 GCATTGGCACACAAAAATACGAAGATGTACCCAAACCCACCTACCACCCTATCAATCCACAGCTT
* * **
15393195 GCGCATCCCATCTCTCTGGCTG-GCGTAGTGCTTGCCAGCCCGCCCA
829 GCGCATCCCATCTCTCTGGCCGAGAG-AGTGCCCGCCAGCCCGCCCA
* * * *
15393241 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCGGTCTAAGATCGGACCGGAT
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAT
* * * *
15393306 CGAGGGTTACGGTAGTAGGATCGATAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGTACA
66 CGAGGGTTACGGCAGCAGGATCG-CAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCACA
* * * * **
15393371 TCCCGCCTCTCTGGCCGGTTGAGTGCCCGCGCGCTTGTTTCGTGGGTTGACTTAGGCATACGTTG
130 TCCCGCC-CTCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAG
15393436 TTCATT-CCATGTCTAAG
194 TTCATTCCCA-GTCTAAG
15393453 CATATGGAGT
Statistics
Matches: 954, Mismatches: 123, Indels: 34
0.86 0.11 0.03
Matches are distributed among these distances:
875 6 0.01
876 260 0.27
877 1 0.00
879 1 0.00
883 1 0.00
886 78 0.08
887 175 0.18
888 430 0.45
889 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAT
CGAGGGTTACGGCAGCAGGATCGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCACAT
CCCGCCCTCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGAGCATGTG
CTGGTGCCACAATTTTCTTCATCGAGGCACCATCATCGGAGCATCGTCGAAGAACCAAACCAGCG
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGTATGCGCACATGATGTGCAATGGGTGCTG
GTACTTAGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTACTGCCAGTAACCATTAAAGTGTCTGAAATGGCGACACTTTTT
TCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAACTTTTTTGTACATGCCAACAA
AATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCT
CAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCA
CGTGAAGGCTTAAGAGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAA
TACGAAGATGTACCCAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCCATCTCTCT
GGCCGAGAGAGTGCCCGCCAGCCCGCCCA
Found at i:15395088 original size:26 final size:26
Alignment explanation
Indices: 15395059--15395110 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15395049 GTTGACTTAG
*
15395059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15395085 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15395111 AATCAGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15395989 original size:26 final size:26
Alignment explanation
Indices: 15395953--15396005 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15395943 GTTGACTTAG
15395953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15395979 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15396005 G
1 G
15396006 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15397458 original size:888 final size:884
Alignment explanation
Indices: 15393494--15399656 Score: 7047
Period size: 887 Copynumber: 6.9 Consensus size: 884
15393484 ATCGGACCGA
* ** *
15393494 GGGTGTGCGCATATGATACGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* ** * * * * *
15393559 ATTAAATTTTGAGAACTCACA-CTCTCTTAAAGGGCATTTGAGATTTTACAAGTTTGCTGCCAGT
66 ATCAAACCTCGAGAACTCAAACCCCT-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
15393623 AGCCATTAAAGTATCTAAAATGAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
130 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
**
15393688 GTTTTTAGCTGAATGCTTTTGTGCATGCCAACAAAAATAC-AGCGATCACGTCTACCAAGTTTGG
195 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTT-G
* * * * *
15393752 GGCCAAAACTCCTTCTGAAAAAATTCTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGA
258 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
* * * *
15393817 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGTGACCATTGAATGAA
323 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
15393882 TTTACAAGCCATAAAAATGGCATTGGCTTGTAGAAATATGAAGATGTGCCTAAACCCACCAACCA
388 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
15393947 CCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGAGCACGCCCGCCCGCTCG
453 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGT--AG--TGCCCGCCCGCCCG
* * * * * * * * *
15394012 CCCGTCCGTTCAATTCGTCGGTTGGCTTAGGAATACGAAGTTCATTCCTAGTCTAAGATTGGATC
514 CCCG--C--TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACC
* * * * * * *
15394077 GGACCGAGGGT-T-GC-G-GCAGCACGTAGAGGGGGACCTGGCCGATCC-CTGACTTGCGCATCC
575 AGACTGAGGGTGTAGCAGATCAGCACGCAGAGGGGGACCCGGTCGATCCTC-GGCTTGCGCATCC
* * * *
15394137 CGCCCCTTTAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTC
639 CG-CCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** *
15394202 ATTCCCAG--T---C-T----A----A-----AATCT--GAT-----TGGATTGAGGGTTACGGT
702 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGC
** *
15394241 AGCACATGCTGGGCTCGGGCATGTGCTGGTGTTGCATTTTTCTTTATCGAGGCACCATCGTCGGA
767 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCG-GGCACCAT-G-CGGA
* * * * *
15394306 GAATCGTCTGAGAACCTGAACGGCGGCATTGGGGTTCCGACGATC-GGGGGGTCAGG
829 GCATCG-CTGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
15394362 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
15394427 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTA
66 ATCAAACCTCGAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
15394492 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
15394556 TTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
196 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG
* * * * * *
15394621 CCAGAACTCCTTCC-AAAAAAATTTAAAAAATCCCGAACGGTAAAAAGTTTCAAAAATCGTGAAA
260 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
*
15394685 AATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
325 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * * *
15394750 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGCGCCTAAACCCACCTACCACA
390 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
15394815 CTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGAAGTAGTGCCTGCCTGCCCGCCCGCT
455 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCT
** * * * * * * *
15394880 TGTTTCGTTGGTTGGTTTAGGCATACGAAGTTCATTCCCAATCTAAGATTGGA-CTGAACTGAGG
520 CATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAG-ACTGAGG
* **
15394944 GTTGCGGTAGAAGGATTGACAGCACATAGAGGGGGACCCGG-CTGATCCTCGGCTTGCGCATCCC
584 G-T---GTAGCA-GA-T--CAGCACGCAGAGGGGGACCCGGTC-GATCCTCGGCTTGCGCATCCC
* *
15395008 GCCCTTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
640 GCCC-TCTGGCCGGCTGAGC-GCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
15395073 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCAGACTGGACTGAGGGTTACGGCA
703 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCA
* * * *
15395138 GCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTACCGGAG
768 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGCACCA-T-GCGGAG
* * * * *
15395203 GATCGCCGTAGAACTTGACCGACGGCATTGAGGTTTCGACGATCGGGGGGGCCGGG
830 CATCGCTG-AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* ** * *
15395259 GGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACTATTATATTGGTCCCCTATCCAT
1 GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
15395324 CATCAAACCTCAAGAACTCACAGCCCCTTT-AATAGCATTTGAGATTTTACAGGTTTGCTGCC--
65 CATCAAACCTCGAGAACTCA-AACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
15395386 -AG----TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
129 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
15395446 AGTTTCTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
194 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-G
* * *
15395511 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAGAAGTCTCAAAAATCATGA
258 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
* *
15395576 AAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAA
323 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
15395641 TTTACAAGCCATAAAAGTGGCATTGGGATGCA-AAAGTATGAAGATGTGCCTAAACCCACCTACC
388 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACC
* * * *
15395705 ACCCTATCAATCCACGGCTTGCGCATCCCGTTTCTCTGGCCCG-CGCAGTGCCCGCCCGCCCGCC
452 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTGACGTAGTGCCCGCCCGCCCGCC
* * * * *
15395769 TGCTCATTTCGTCGGTCGGCTTAGGCAAACGGAGTTCAATCCCAATCTAAGATCGAATCGGATCA
516 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAA-C----C-
** * * * * * * *
15395834 AAGGTTGCGGGAGTAGGATCGA-CAGCACGTAGAGGGGGACTCGGTTGATCCTCGGCCTGCGCAT
575 -AGACTGAGGGTGTAGCA--GATCAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCAT
** * *
15395898 CCCCGCCCCTCTGGCCACCTGAGCGTCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAG
637 -CCCG-CCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
15395963 TTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC
699 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTAC
* * * *
15396028 GGCATCACATGCTGGGCTCGGGCGTGTGCTGGTGCCACATTTTTCTTCATC-GG------G-GTA
764 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGCACCATGCGGA
* * * *
15396085 GCATCGCCGGTGAACCTGACCGACGGCATTAGGGTTCTGACGATCGGGGGGGCCGGG
829 GCATCG-CTGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * *
15396142 GGGTGTGCGTAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-G-CCCCTATCCTTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
** * * * * *
15396205 ATCAAATTTTGAGAACTCGCATCCCC-TTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGT
66 ATCAAACCTCGAGAACTC-AAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15396269 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGA
130 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
15396334 GTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGG
195 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GG
** * * * *
15396399 GATAAAACT-CTATCTGAAAAAATTTTAAAAAATCCCGAACC-CTAAAAAGTTTCGATAATCATG
259 GCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCAAACCGC-AAAAAGTTTCAAAAATCATG
*
15396462 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGA
322 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15396527 ATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
387 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
15396592 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGATGTAGAGCCCGCCCGCCCACCC
452 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCC
* * * * * *
15396657 GCTCATTTCGTCAGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCG
517 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA-ACCAGACTG
*
15396721 AGGGT-TA-C-GA-CAGCACGCAGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATCCCGTCCCT
581 AGGGTGTAGCAGATCAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCG-CCCT
** * * *
15396782 CTGGCAAGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTCACTTAAGCATATGGAGTTCATTCCCA
645 CTGGCCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
15396847 GTCTAAGCATACAGG-GTTCATTCCCAATCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACA
709 GTCTAAGCATAC-GGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACA
* * *
15396911 TGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCTCTGGGCACCATCGCCGGAGCATCG
773 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGCACCAT-G-CGGAGCATCG
* * * *
15396976 CTGGAGAACCTGGCCGGCGGCATTGGGGTTTC-ATCGATCGGGGGGACCGGG
835 CT-GAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGG
* * * *
15397027 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTAGACCTTATAGTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
15397092 ATCAAACCTCGAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
15397157 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGA
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGA
* *
15397222 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAA-TTTCGG
195 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GG
* * * *
15397286 AGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATACCAAACCGTAAAAAGTTTTAAAAATCGTGA
259 -GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
*
15397351 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
323 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
15397416 TTTACAAGACATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
388 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * * * *
15397481 CCTTATCGATCCGCAGCTTACGTATCTCGCCTCTCTGG-TCGGCGTAGTGCCCGCCCGTCCGCCC
453 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GACGTAGTGCCCGCCCGCCCGCCC
* * * * *
15397545 GCTTGCTTGTTTCATCGGTTAGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGATCGAACCAGA
517 GC-T-C--ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGA
* * ** *
15397610 -TAGAGGGTTGCGATAGCAGGATCGGCAGCACGTAGAGGGGTACCCTTTCGATCCCCGGCTTGCG
578 CT-GAGGG-T--G-TAGCA-GAT---CAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCG
* *
15397674 CATCCCATCCCTCTGGCCGACTGAGCGTCCGCACGCTCGTTTCGCAGGTTGACTTAGGTATACGG
634 CATCCC-GCCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTT--C--G-TG-----GGT-T---G
* * *
15397739 AGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAG
683 A---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * * *
15397804 TCTATGATCAGACCTGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCAGGTGCTGGTGCTG
736 TCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
15397869 CATTTTTCTTCACTAGGGCACCATTGTCGGGGCATCGCCTGAGAACCTGACCGACGGCAATGGGG
801 CATTTTTCTTCA-TCGGGCACCA-TG-CGGAGCATCG-CTGAGAACCTGACCGACGGCATTGGGG
15397934 TTCCGACGATC-GGGGGGCCGGG
862 TTCCGACGATCGGGGGGGCCGGG
* * * * *
15397956 GGGTCTGTGCACGTAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTT
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
15398021 ATCAAACCTCGAGAACTCACACACCTTTAAAGAGCATTTGAGATTTTACAGTTTTGCTACCAGTA
66 ATCAAACCTCGAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
15398086 GCCATTAAAGTGTTTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
15398151 TTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTAGG
196 TTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
15398216 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCCCAAAATGTTTCAAAAATCATGAAA
260 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
15398281 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
325 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
15398346 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
390 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
15398411 CTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGATGTAGTGCCCGTCAGCCCGTCCGCT
455 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCT
* * * * *
15398476 CGTTTAATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGG
520 CATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGG
* * * ** *
15398541 TTGCGGCAGCAAGATCGGTAGCGCGCAGAGGGGGTCCCGACCGATTCC-AGGCTTGCGCATCCCG
585 -T---GTAGC-AGATC---AGCACGCAGAGGGGGACCCGGTCGA-TCCTCGGCTTGCGCATCCCG
* * * * *
15398605 CCCTTATGGCCGGCTGAGCGCCTGTACGCTCATTTCATTGGTTGACTTAGGCATACGGAGTTCAT
641 CCC-TCTGGCCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
15398670 T-CCATGTCTAAGGATGA-AGAGTTCATTGCCAATCTAAGATCAGACCAGACCGAGGGTTACGGT
704 TCCCA-GTCTAAGCAT-ACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGC
* * * *
15398733 AGCACATGCTAGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGG---CA--C--A--
767 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGCACCATGCGGAGC
** *
15398789 AT--C-----ACC-G---GACGGCATTGGGGTTCCGGTGCTCGGGGGGGCCGGG
831 ATCGCTGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* *
15398832 GGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * * *
15398897 ATCAAAGCTCGAGAACTCACACCTCC-TTAAAGAGCATTTCAGATTTTACAGATTTACTGCCAAT
66 ATCAAACCTCGAGAACTCAAACC-CCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * * * *
15398961 AGGCATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATAGTCACAAAATCTTGTACATTTTGA
130 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
15399026 GTTTTTAACTGAATTTTTTTGTGGATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGG
195 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
15399091 TTCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAA
260 -CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAA
* *
15399156 AAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGCGAAGGCTTAAGGGACCATTGTATGAAT
324 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
15399221 TTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
389 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
15399286 CCTATCGATCCATGCCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCGCCC-CTCCG
454 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGC-CCG
* *
15399350 CCCACTCGTTGCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATC-AGACCAGA
518 CTCA-T--TT-CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA-ACCAGA
* *
15399414 CTGAGGGTTGTGGTAGCAGGATCAGCAGCATGCAGAGGGGGACCC-GACTGATCC-CTGGCTTGT
578 CTGA-GG--GT-GTAGCA-GATCAGCA-C--GCAGAGGGGGACCCGGTC-GATCCTC-GGCTTGC
* * * * * *
15399477 GCATCCCGCCCCTCTAGCCGGCTGAGCCCCCGCACGTTCGTTTCATGGGTTGACTTTGGCATAGG
633 GCATCCCG-CCCTCTGGCCGGCTGAG-CGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * ** *
15399542 GAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGTTCGATGGT
696 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGT
* * *
15399607 TACGACAGCACATGCTGGGCTCGGGCATGTGGTGGTGTCGCATTTTTCTT
761 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
15399657 GGGGACATTG
Statistics
Matches: 4579, Mismatches: 522, Indels: 376
0.84 0.10 0.07
Matches are distributed among these distances:
857 2 0.00
858 53 0.01
859 1 0.00
860 1 0.00
862 14 0.00
863 1 0.00
864 3 0.00
866 203 0.04
867 91 0.02
868 156 0.03
869 6 0.00
870 99 0.02
871 1 0.00
872 1 0.00
873 2 0.00
874 158 0.03
875 110 0.02
876 438 0.10
877 6 0.00
878 2 0.00
879 16 0.00
880 290 0.06
881 11 0.00
882 44 0.01
883 55 0.01
884 6 0.00
885 91 0.02
886 13 0.00
887 504 0.11
888 304 0.07
889 8 0.00
890 1 0.00
891 41 0.01
892 151 0.03
893 295 0.06
894 161 0.04
895 9 0.00
896 109 0.02
897 22 0.00
898 210 0.05
899 8 0.00
900 7 0.00
901 1 0.00
903 2 0.00
904 67 0.01
905 2 0.00
906 3 0.00
907 1 0.00
908 1 0.00
909 2 0.00
910 2 0.00
913 1 0.00
914 6 0.00
915 1 0.00
918 1 0.00
919 1 0.00
921 2 0.00
922 3 0.00
923 5 0.00
924 120 0.03
925 7 0.00
926 1 0.00
927 1 0.00
928 266 0.06
929 215 0.05
930 159 0.03
931 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTC
ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGT
GTAGCAGATCAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCTCTGGCC
GGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGCACCATGCGGAGCATCGCTGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
Found at i:15397769 original size:26 final size:26
Alignment explanation
Indices: 15397733--15397807 Score: 150
Period size: 26 Copynumber: 2.9 Consensus size: 26
15397723 TGACTTAGGT
15397733 ATACGGAGTTCATTCCCAGTCTAAAC
1 ATACGGAGTTCATTCCCAGTCTAAAC
15397759 ATACGGAGTTCATTCCCAGTCTAAAC
1 ATACGGAGTTCATTCCCAGTCTAAAC
15397785 ATACGGAGTTCATTCCCAGTCTA
1 ATACGGAGTTCATTCCCAGTCTA
15397808 TGATCAGACC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAAC
Found at i:15399565 original size:26 final size:26
Alignment explanation
Indices: 15399535--15399587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15399525 GTTGACTTTG
* *
15399535 GCATAGGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15399561 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15399587 G
1 G
15399588 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15401649 original size:701 final size:701
Alignment explanation
Indices: 15400269--15401825 Score: 2358
Period size: 701 Copynumber: 2.2 Consensus size: 701
15400259 GAGAACTCAT
*
15400269 GTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
1 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * * *
15400334 ATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCAG
66 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
15400399 G-TCGGCGTAGTGTCCGTCCGCCTGCCTACCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAG
131 GCT-GACGTAGTG--C--CCGCCTGCCT---CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
* **
15400463 TTCATTCCCACTCGAAGATCGAACTGGACCAAGGGTTGCAACAGCACATGCTGGGCTCGAGCATG
188 TTAATTCCCACTCGAAGATCGAACCAGACCAAGGGTTGCAACAGCACATGCTGGGCTCGAGCATG
* *
15400528 CGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCGACATTGGGG
253 CGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGAAGAACCTGACCGACGACATTGGGG
*
15400593 TTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCC
318 TTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGCTGCTGGTACTTGGCC
* * *
15400658 CCTATATCGGCTCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
383 CCTATATCGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15400723 ATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACATTTTTTTCAAATGGT
448 ATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGT
* *
15400788 CACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAG
513 CACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACGAG
**
15400853 GATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCA
578 GATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCA
15400918 CAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
643 CAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * ** *
15400977 GTGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACACATAAAT
1 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * *
15401042 ATGATGATGTGCCTAAACCCACCTACTACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTG
66 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
15401107 GCTGACGTAGTGCCCG-CTCGCCT-GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTC
131 GCTGACGTAGTGCCCGCCT-GCCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTC
* * * *
15401170 CCAGTCTAAGATC-AGACCAGA-CAGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGCGCTG
195 CCACTCGAAGATCGA-ACCAGACCA-AGGGTTGCAACAGCACATGCTGGGCTCGAGCATGCGCTG
* * *
15401233 GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGAACCTGACCGATGACATTGGGGTTCCG
258 GTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCG
* * *
15401298 ACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
323 ACGATCGAGGGGGCCG-GGGGGTGTGCGCACATGATGTGCAATGGCTGCTGGTACTTGGCCCCTA
*
15401363 TATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
387 TATCGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
15401428 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
452 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACA
* *
15401493 AAATCTTGTACACTTCGAGTTTTTAACT-AATTTTTTTTTGTG-ATTGCCAATAAAAATAC-AGG
517 AAATCTTGTACACTTCAAGTTTTTAACTGAA--TTTTTTTGTGCA-TGCCAACAAAAATACGA-G
* * * *
15401555 GTTCATGTCTACCAAGTTT-GGGCCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
578 GATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCA
* ** * * *
15401619 TAAAACTTTTTGAAAATCGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
643 CAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
15401678 GTGATGGTTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACGTAGAAAT
1 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* *
15401743 ATGAAGATGTGCCTAAACCAACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
66 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
15401808 GCCGACGTAATGCCCGCC
131 GCTGACGTAGTGCCCGCC
15401826 CGTCCACCCG
Statistics
Matches: 770, Mismatches: 69, Indels: 26
0.89 0.08 0.03
Matches are distributed among these distances:
699 3 0.00
700 167 0.22
701 420 0.55
702 43 0.06
703 2 0.00
704 7 0.01
706 1 0.00
708 126 0.16
709 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (701 bp):
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCTGACGTAGTGCCCGCCTGCCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCC
CACTCGAAGATCGAACCAGACCAAGGGTTGCAACAGCACATGCTGGGCTCGAGCATGCGCTGGTG
CCATATTTTTCTTCGTCGGGGCACCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCGACG
ATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGCTGCTGGTACTTGGCCCCTATATC
GGCCCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
AGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCACGT
CTACCAAGTTTGGGGCCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGT
TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
Found at i:15402051 original size:26 final size:26
Alignment explanation
Indices: 15402021--15402073 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15402011 GTTGACTTAG
15402021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15402047 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15402073 G
1 G
15402074 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15402830 original size:26 final size:26
Alignment explanation
Indices: 15402800--15402852 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15402790 GTTAACTTAG
* * *
15402800 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15402826 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15402852 G
1 G
15402853 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15404596 original size:26 final size:26
Alignment explanation
Indices: 15404567--15404618 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15404557 GTTGACTTAG
15404567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15404593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15404619 CATCAAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15404860 original size:899 final size:901
Alignment explanation
Indices: 15403057--15405172 Score: 3041
Period size: 899 Copynumber: 2.4 Consensus size: 901
15403047 ACCTCGAATG
** * * *
15403057 ACTCACA-CCCCTTAAAGAGCATTTGA-A-TCAACAGG-TTGTTGCCAATAGCCATTAAAGTG-C
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
**
15403117 TGAAAT-GGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTT-GAG---CAAGCTGAATT
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
15403176 TTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGACAAACCGCCTTCCG
131 TTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * * * * * * *
15403241 AAAGAATTTTAAGAAATCTTGAAGCATAAAACGTTTCGAAAATCGTGAAAAATAGAGAACGAGTC
196 AAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
15403306 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAT
261 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAT
* * *
15403371 TGGCATTGGCACATAGAAATTTGAAGATGTGCCTAAACACACTAACCACCCTATCAATCCACGGC
326 TGGCATTGGCACACAGAAATATGAAGATATGCCTAAACACACTAACCACCCTATCAATCCACGGC
* * * * * * *
15403436 TCGCACGTCCCGTCTCTCTGGCCAGTATAGTGCCCGCCTGGCCGCCCGTCCGCTCGTTTTGTTGG
391 TCGCACATCCCGTCTCTCTCGCCAGCATAGTGCCCGCAT-G-CGCCCGCCCGCTCGTTTCGTTCG
*
15403501 TTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCTGGTAGCA
454 TTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCTGGTAGCA
* * * * * * * *
15403566 GGATCGACAGCACGTAGAGGGGGACTCAATTGATCCCCAGCTTGTGCATCCTGCCCCTCTTGTCG
519 AGATCGACAGCACGCAGAGGGGGACCCAACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* *
15403631 GCTGAGCGCCCACACGCTGATTTCGTGGGTTAACTTAGGCTTACGAAGTTCATTCCCAGTCTAAG
584 GCTGAACGCCCACACGCTGATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
* ** * ** *
15403696 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTGTGGCAGCACATGCTGGGC
649 CATACAGAGTTCATTCCCAGTCTAACATCAAACCGAACCAAGGGTTATGGCAGCACATGCTGGGC
* *
15403761 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGTGCACCATCGTCGGAGCATCGCCGGAGAA
714 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGTGCACCATCATCGGAGCATCACCGGAGAA
* **
15403826 CCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGGTGTCCACACATGATGTGC
779 CCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTCCACACATGATGTGC
* * *
15403891 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTTATCAAACCTCGAGA
844 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATACCTCATCAAACCTCAAGA
* *
15403949 ACTGACACCCCCTTAACGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
15404014 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
15404079 GTTTTGTGCATGCTAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
131 -TTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
15404144 AAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
195 AAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
*
15404209 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
260 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * ** * *
15404274 -TGGCATTGGCACACAGAAATATGAAGATATGGCTAAACCCGCTTGCCACCCTATCGATCCATGG
325 TTGGCATTGGCACACAGAAATATGAAGATATGCCTAAACACACTAACCACCCTATCAATCCACGG
* * * *
15404338 CTTGCACATCCCGTCTCTTTCGCCAGCGTAGTGCCCG-AT-TGCCCGCCCGCTCGTTTCGTTCGT
390 CTCGCACATCCCGTCTCTCTCGCCAGCATAGTGCCCGCATGCGCCCGCCCGCTCGTTTCGTTCGT
* * *
15404401 TGGCTTAGGTATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTAC-GGTAGCA
455 TGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-CTGGTAGCA
** * *
15404465 AGATCGGTAGCATGCAGAGGGGGACCCGACTGATCCCCAGCTTGCGCATCCCGCCCCTC-GGCCG
519 AGATCGACAGCACGCAGAGGGGGACCCAACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
** * *
15404529 GCTGAACGCCCGTACGCTTG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
584 GCTGAACGCCCACACGC-TGATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
15404593 GCATACGGAGTTCATTCCCAGTCTAACATCAAACC-AGACCAAGGGTTATGGTAGTAGATGCTGG
648 GCATACAGAGTTCATTCCCAGTCTAACATCAAACCGA-ACCAAGGGTTATGGCAGCACATGCTGG
* * *
15404657 GCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTCAGG-GCACCATCAAT-GGAGCATCATCGG
712 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGTGCACCATC-ATCGGAGCATCACCGG
* * * * * * *
15404720 AGAACCTGACCGGCAGTATTGGGGTTCCGACGATCGGGTGGGTCGGGGGGGTTGTGCGCACATGA
775 AGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGG-TGTCCACACATGA
*
15404785 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGA
839 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATACCTCATCAAACCTCAAGA
15404848 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
*
15404913 TGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
*
15404978 TTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCC
130 TTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
15405043 AAAGAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTGACAATCATGAAAAATAGAAAACGAG
195 AAAAAAATTTTAAAAAATCTC-GAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
15405107 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
259 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
15405172 A
324 A
15405173 ATGAAATTGG
Statistics
Matches: 1093, Mismatches: 111, Indels: 33
0.88 0.09 0.03
Matches are distributed among these distances:
892 6 0.01
893 18 0.02
894 1 0.00
895 6 0.01
896 22 0.02
897 7 0.01
898 224 0.20
899 532 0.49
900 6 0.01
902 1 0.00
903 94 0.09
904 176 0.16
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (901 bp):
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
AAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAT
TGGCATTGGCACACAGAAATATGAAGATATGCCTAAACACACTAACCACCCTATCAATCCACGGC
TCGCACATCCCGTCTCTCTCGCCAGCATAGTGCCCGCATGCGCCCGCCCGCTCGTTTCGTTCGTT
GGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCTGGTAGCAAG
ATCGACAGCACGCAGAGGGGGACCCAACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
TGAACGCCCACACGCTGATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAACATCAAACCGAACCAAGGGTTATGGCAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGTGCACCATCATCGGAGCATCACCGGAGAACC
TGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTCCACACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATACCTCATCAAACCTCAAGA
Found at i:15405380 original size:245 final size:245
Alignment explanation
Indices: 15404945--15405438 Score: 776
Period size: 245 Copynumber: 2.0 Consensus size: 245
15404935 AATGGTCACA
* * *
15404945 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * **
15405010 ACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAGAAATTTTAAAAAATCCTGAACCGTAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAGAAATTTTAAAAAATCCTAAACCACAAAA
** * *
15405075 AGTTTTGACAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
131 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
15405140 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCATGCAG
196 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCATGCAG
*
15405190 AAATTTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * *
15405255 ACGTCTACCATGTTTGGGGCCAAAAGTCCTTCCGAAA-AAATTTTAAAAAATCCTAAAGCACAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAGAAATTTTAAAAAATCCTAAACCACAAA
*
15405319 AAGTTTCAAAAATCGTGAAAAATA-AAAACCGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
130 AAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
* ** *
15405383 TAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAG
194 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCATGCAG
15405435 AAAT
1 AAAT
15405439 ATGAAGATGT
Statistics
Matches: 227, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
244 4 0.02
245 220 0.97
246 3 0.01
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (245 bp):
AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAGAAATTTTAAAAAATCCTAAACCACAAAA
AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCATGCAG
Found at i:15406695 original size:705 final size:709
Alignment explanation
Indices: 15405190--15407041 Score: 2502
Period size: 705 Copynumber: 2.6 Consensus size: 709
15405180 TGGCATGCAG
* * * *
15405190 AAATTTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
15405255 ACGTCTACCATGTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCTAAAGCACAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCTAAACCACAAAA
*
15405320 AGTTTCAAAAATCGTGAAAAATA-AAAACCGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
131 AGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
* * ***
15405384 AAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
195 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAGAAATATGAAGATGT
* * *
15405449 ACCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGAAG
260 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAG
**
15405514 TGCCCACCCGCCCGCCCGCTTGCCCGCACATTTTGTCGGTTGGCTTAAGCATACAGAGTTCATTC
324 T--------GCCCGCCCGCTT--CCG---ATTTCATCGGTTGGCTTAAGCATACAGAGTTCATTC
* *
15405579 CCAGTCTAAGATCGGACCGAATCGAGGGTTACAGCAGCACATACTAGGCTCGGGCATGTGCTGGT
376 CCAGTCTAAGATCAGACCGAAACGAGGGTTACAGCAGCACATACTAGGCTCGGGCATGTGCTGGT
* * *
15405644 GCCGTAATTTTCTTCATCGGGGCACCATTACCGGAGCATCACCGAAAAACCTGACCGGCGGCATT
441 GCCGCAATTTTCTTCATCGGGGCACCATCACCGAAGCATCACCGAAAAACCTGACCGGCGGCATT
* * *
15405709 GGGGTTCTGACGATCGGGGGGCCGAGAGGGGTGTGCACACATGATGTGCGATGCATGCTGCTAGT
506 GGGGTTCTGACGATCGGAGAGCCGAGAGGGGTGTGCACACATGATGTGCGATGCATGCTGCTACT
* ** *
15405774 TGGGCCTTATATCGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCAT
571 TGGGCCTTATATCGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
15405839 TTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAA
636 TTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAA
15405904 ATGGTCACA
701 ATGGTCACA
* *
15405913 AAATCTTGTATACTTCGAGTTTTTAGCTGAA-TGTTTTTGTGCATGCCAACAAAAATGCAAGGAT
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
15405977 CACGTCCACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAATGCTAAACCGCAAA
65 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCTAAACCACAAA
** * *
15406042 AAGTTTTGAAAATTATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
130 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
15406107 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAACTATGAAGATGC
195 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAGAAATATGAAGATGT
* * *
15406172 GCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGTCGGCGTAG
260 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAG
* * *
15406237 TGCCCGCCCGC-T-CG-TTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATC
324 TGCCCGCCCGCTTCCGATTTCATCGGTTGGCTTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * * *
15406299 AGACC-AAACAGAGGGTTGCAGTAGCACATGCTGGGCTTGTG-ATGTGCTGGTGCCGCAATTTTC
389 AGACCGAAAC-GAGGGTTACAGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCAATTTTC
* * * * * * *
15406362 TTCCTCGGGGCACCATCATCGAAGTATTACCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCG
453 TTCATCGGGGCACCATCACCGAAGCATCACCGAAAAACCTGACCGGCGGCATTGGGGTTCTGACG
* * ** * * *
15406427 ATCAGGAGAGTCG-G-GGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGTCCTTATA
518 ATC-GGAGAGCCGAGAGGGGTGTGCACACATGATGTGCGATGCATGCTGCTACTTGGGCCTTATA
*
15406490 TTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
582 TCGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
15406555 CAGCTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACA
647 CAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACA
*
15406618 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTCCATGCCAACAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
* * **
15406683 ACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAA
66 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTT-CGAAAAAATTTTAAAAAATCCTAAACCACAAA
* * *
15406747 AAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCCTGAAACTTCACGTGAAGGCTT
130 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
* *
15406812 AAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAAAAATATGAAGATGT
195 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAGAAATATGAAGATGT
* * * *
15406877 GCCTCAACCCACCTGCCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAG
260 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAG
* * * *
15406942 TGCCCGCCCGCCTGTCTGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATAC-GAAGTTCATTCCCA
324 TGCCCGCCCG-C--T-T-C-CG---ATTTCATCGGTTGGCTTAAGCATACAG-AGTTCATTCCCA
** * *
15407006 GTCTAAGATTGGACCGAACCGAGGGTTACAGTAGCA
379 GTCTAAGATCAGACCGAAACGAGGGTTACAGCAGCA
15407042 GGATCGGTAG
Statistics
Matches: 999, Mismatches: 110, Indels: 46
0.86 0.10 0.04
Matches are distributed among these distances:
704 4 0.00
705 459 0.46
706 87 0.09
707 78 0.08
710 1 0.00
711 2 0.00
713 2 0.00
714 1 0.00
715 10 0.01
716 1 0.00
717 61 0.06
718 3 0.00
722 1 0.00
723 285 0.29
724 4 0.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (709 bp):
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCTAAACCACAAAA
AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCGGCGTAGTG
CCCGCCCGCTTCCGATTTCATCGGTTGGCTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCGAAACGAGGGTTACAGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTC
ATCGGGGCACCATCACCGAAGCATCACCGAAAAACCTGACCGGCGGCATTGGGGTTCTGACGATC
GGAGAGCCGAGAGGGGTGTGCACACATGATGTGCGATGCATGCTGCTACTTGGGCCTTATATCGG
CCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGC
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACA
Found at i:15408041 original size:26 final size:26
Alignment explanation
Indices: 15408012--15408064 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15408002 GTTGACTTAG
*
15408012 GCATAC-GAAGTTCATTCCCAGTTTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15408038 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15408064 G
1 G
15408065 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15409796 original size:26 final size:25
Alignment explanation
Indices: 15409760--15409811 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
15409750 GTTGACTTAG
* *
15409760 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTAATT-CCAGTCTAA
*
15409786 GCATACAGAGTTAATTCTAGTCTAA
1 GCATACAGAGTTAATTCCAGTCTAA
15409811 G
1 G
15409812 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTAATTCCAGTCTAA
Found at i:15410668 original size:26 final size:26
Alignment explanation
Indices: 15410632--15410682 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15410622 TAGACTTAGG
15410632 CATACGAAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTCATTCCCAGTCTAAA
* *
15410658 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
15410683 GGTCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:15411570 original size:26 final size:26
Alignment explanation
Indices: 15411534--15411586 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15411524 GTTTACTTAG
15411534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15411560 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15411586 G
1 G
15411587 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15411653 original size:903 final size:902
Alignment explanation
Indices: 15409474--15417707 Score: 10439
Period size: 902 Copynumber: 9.2 Consensus size: 902
15409464 TTAAGCGACC
* *
15409474 ATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
15409539 CTTGCGTATCCCATCTCTCTGGCCGACGTAGTACCTGCCCGCCCGTCGGCCCGCTCGTTTCATCG
66 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
15409604 GTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGACCAGACCAAGGGTTGC-G--GC
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGC
* * * * * *
15409666 ---A---GC--C-CGTAGAGGGGGACCCGACCGATCCTCGGCTTG-GCATCTCGTCCTTCTGGTC
196 AGGATCGGCAGCACGTAGAGGGGGA-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
15409721 GGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
260 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
15409786 GCATACAGAGTTAATT-CTAGTCTAAGATC-GAATCGGACCGAGGGTTACGG-TGTCACATACTA
325 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGCAG-CACATGCTG
* ** *
15409848 GGCTTGGGCATGTGCTGGTGCCATATTTTTCTTC-CCTGGGGCACCAT--T----G-----CCGG
388 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGG
* * * * * *
15409901 AGAACTTGACCGGTGGCATTAGGGTTCCGGCGATCAGGGGGGCCAGGGGGGTGTGCTCACATGAT
452 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGAT
* *
15409966 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACT
516 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
15410031 CATACCCCTTTAAAAAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
581 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15410096 AATGGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
646 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
15410161 TT-T--TTG-C-------ATGAC-A--A-CA-----A-AAAGTTTGGGGCCAAAACTCCTTCCAA
711 TTGTGCATGCCAAAAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* ** * * * * *
15410205 AAAAATTTAAAAAAATATCGAACCGCAGAAAGTTACAAATATCGTGAAAAATAGAAAATGAGTCA
775 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15410270 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAA
840 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
15410333 ATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAA-CCACCTACCAACCTATCGATCTATGG
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
15410397 CTTGCGCATCCCATCTCTTTGGCCGGCGTAATGCCTGCCCGCCCGCCCGCCTGCTCGTTTCGCCT
66 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* **
15410462 GTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAATTGAGGGTTGCGGTAG
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGGTAG
* * **
15410526 TAGGATCGGCAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGC
195 CAGGATCGGCAGCACGTAGAGGGGGA-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* ** * *
15410591 CGGCTAAGCGCCCGCACGCTCGTTTAATGGGTAGACTTAGGCATACGAAGTTCATTCCCAGTCTA
259 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
15410656 AACATACGGAGTTCATTCCTAGTCTAAGGTCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
324 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
15410721 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCACCGGTG
389 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
*
15410786 AACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGT
454 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGT
* * * *
15410851 GCGGTGGG-GACTGGTACTTGGCGCTTATATTGGACCCCTATCCCTCATCAAACCTTGAGAACTC
518 GCGATGGGTG-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15410915 AAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
582 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15410980 ATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
647 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
15411045 TGTGCATG-AAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
712 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
** * * ** *
15411109 AAATTTTAAAAAATCTTGAACAGAAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTC
777 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15411174 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCGATAAAA
842 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
15411235 ATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTACCGAAT-CACG
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACG
* ** * * *
15411299 GCTTGCGCATCCCGTCTTTCTGGCTTACGTAGTGCTCGCCTGCCTGCCCGCCCGCTCGTTTCGTC
65 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * ** * * **
15411364 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATTGAAGGTTGTGACAG
130 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAG
* * *
15411429 CAGGATCGGCAGCACGTAGAGGGGGACTCGATCGATCCTCGACTTGTGCATCCCGCCCCTCTGGC
195 CAGGATCGGCAGCACGTAGAGGGGGAC-CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
15411494 CGACTGAGCGCCTGCACGCTCATTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTA
259 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * **
15411559 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACAAGGGTTGTGGCAGCACATGCTGG
324 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGG
* *
15411624 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
389 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * *
15411689 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGTC-GGGGAGTGTGCGGACATGATGT
454 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
15411753 GAGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCTCTATCCCTCATCAAACCTGGAGAACTCA
518 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * **
15411818 CACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCAAAAA
583 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15411883 TGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTT
648 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
15411948 GTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
713 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * *
15412013 AAGTTTAAAAAATCTCGAACCGCAAAAAGCTTCAAAAATCGTGAAAAATGGAAAACGAATCGTCT
778 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15412078 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAA
843 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
15412138 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGG
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
15412203 CTTGTGCATCCCGTCTCCCTGGCC-AGCGTAGTGCCCGCTCGCCCGCCAGCCCGTTCGTTTCATC
66 CTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * ** * *
15412267 TGTTGGCTTAGGCTTACGAAGTTCATTCCCAATCTAAGATCATACCAGACCGAGGGTTGTGGTAG
130 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAG
* * *
15412332 CAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGC
195 CAGGATCGGCAGCACGTAGAGGGGGA-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * ** * *
15412397 CGGCTGAGCACCC-CACGCTCATTCCATGGGTTGACTTAGGCATACGGAAATCAATCCCAATCTA
259 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * ** *
15412461 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAACACATGCTGG
324 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGG
** * * * **
15412526 GCTTAGACATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCTGAGCATCGTCGGAG
389 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* **
15412591 AACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGTTGGGTGTGCGCACATGATGTG
454 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
15412656 CAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
519 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15412721 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
584 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15412786 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
649 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * *
15412851 TGCATGCCATCAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGACAAAACTCCTTCCGAAAAA
714 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * **
15412916 ATTTGAAAAAATCCCAAACCGCAAAATGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
779 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15412981 GCCACGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
844 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
15413040 ATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
15413105 CTTGCGCATCCCGTCTCCCTGGCCGACGTAGTGCCCACCCGCCCGCCTGCCCGCTCGTTTCGTCG
66 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * ** *
15413170 GTTGGCATAGGCATACGAAGTTCATTCCCAGTTTATGATCGGA-CTGGACCGAGGGTACCGGCAG
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGTAG
* * * * * **
15413234 CAAGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCTCGGCTTACGCATCTAGCCCCTCTGGC
195 CAGGATCGGCAGCACGTAGAGGGGGACC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
15413299 CGGCTGA-CACCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
259 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
15413363 AGCATATGGAGTTCTTTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGAACATGCTGG
324 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * *
15413428 GCTCGAGCAAGTGCTGGTGCCGTATTTTTCTTCGTCGGAGCACCATCGTCAGAGCATCACTGGAG
389 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * *
15413493 AGCCTGACCGACGGCATTAGGGTGT-CGATC-ATCGGGGGGTC-GGGGGGTGTACGCACATGATG
454 AACCTGACCGGCGGCATTGGGGT-TCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
* **
15413555 TGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGCGCTC
517 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
15413620 ACACCCCTTTAAAGACCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCACTAAAGTGTCTGAA
582 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
15413685 ATGTGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGATTTTTTT
647 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15413750 TGTGCATGCCAACAGAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCAAAA
712 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
** * * **
15413815 AAATTTTGCAAAATCCGGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
777 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
15413880 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
842 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
15413941 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGG
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
15414006 CTTGCGCATCCCGTCTCTTTGACCGGCATAAT--------GCCTGCCCGCCCTCTCGTTTCGTCG
66 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* **
15414063 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCAATAGC
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGC
* * * * * * * * *
15414128 AAGATTGGAAGCATGCAGAGGGGGACCCAGCCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCC
196 AGGATCGGCAGCACGTAGAGGGGGACCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * *
15414193 AGCTGAGCGCCCGCACTCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCTAATTTAA
260 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ***
15414258 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCAATAGCACATGCTGGG
325 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15414323 CTCGGGCATGTGCTGCTGCCACATTTTTCATCGTCGGGGCACCGTTGTCGGAGCATCACCGGAGA
390 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * **
15414388 ACCTAACCGGCGGCATTGGGGTTCTGATGATCGGGGGGGCCGGAAGGGTGTGCGCACATGATGTG
455 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
15414453 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCAC
519 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
**
15414518 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAAT
584 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15414583 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
649 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15414648 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCACAAAG
714 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
15414713 ATTTTAAAAAATCCCGAACCGCAAAAAGTTACGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
779 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
15414778 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
844 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * *
15414837 ATGGCATTTTCACGCAGAAATATGAAGATATGCCTAAACCCACCTGCCACCCTATCGATCCACGG
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
15414902 CTTGCGCTTCCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCG
66 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * *
15414963 GTTCGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATGGGATCAGACTGAGGGTTGTGGTAGT
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGC
* * * * * *
15415028 AGGATCGGTAGAACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCC
196 AGGATCGGCAGCACGTAGAGGGGGACCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
15415093 GGCTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
260 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15415158 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
325 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *** * * * * * *
15415223 CTCGGGCTTGTGCTGGTATTGGATTTTTCTTCATCGAGGCACCATTGTCCGAGCATCACCGAAGA
390 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
15415288 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGAGGGGTGTACGCACATGATGT
455 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGG-GGGGTGTGCGCACATGATGT
* *
15415353 GCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTC-AGAACTCA
518 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15415417 CACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTT-CTGGCAGTAGCCATTAAAGTGTCTGAAA
583 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15415481 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
648 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15415546 GTGCATGCCAAAAAAAATAAAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAC
713 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** * * * * *
15415611 AATTTTAAAAAATCCTAAATCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCC
778 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
15415676 TGCCATGAAACTTCACGTAAATGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAGAA
843 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
15415736 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATCCACGG
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
15415801 CTTGCGCATCCTGTCTCTTTGGCC-AGCATAGTGCCCGCCCGACCGCCTGCCCGCTCGTTTCGTC
66 CTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * *
15415865 TGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGA-CTAGATCGAAGGTTACGGTA
130 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGTA
* * * ** * ** *
15415929 GGAGGATCGGCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTATGCATCCCTCCCCGATTG
194 GCAGGATCGGCAGCACGTAGAGGGGGA-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *** * * *
15415994 CCGGCTGAGCACTCACATTTTCGTTTCGTGGGTTGACTTAGGTATACGGTGTTCATTTCCAGTCT
258 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
15416059 AAGCATAC-GAGTCCATT-CCAGTCTAA-ATCAAATCTGATCGATGGTTACGGCAGCACATGCTG
323 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTG
* * **
15416121 GGCCCGGGCATGTGCTGGTGCCGCATTTTTCTACGTCGGGGCACCATCGTCGGAGCATCGTCGGA
388 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * * *
15416186 GAACCTGATCGGCGGCATTGAGGTTCCGGCGATCGAGGGGGACGGGGGGGTGTGCGCACATGATG
453 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATG
*
15416251 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTC
517 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15416316 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAA
582 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15416381 AGGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTGTTAGCTG-ATTGTTT
647 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* **
15416445 TTGTGCATGCCAACAAAAATACAAGGATCACACCTACCAAGTTTGGGGCCAAAACTCCTT-CAGA
711 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-A
* * *
15416509 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAGAAATAGAAAACGAGTCG
775 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
15416574 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAA
840 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** *
15416637 ATGGCATTGGCATGCAGAAATATAAAGATGTGCCT--------CTACCACCCTATCGATCCGTGA
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * * *
15416694 CTTGTGCATCCCGTCTTTCTGGCCGGTGTATTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTGG
66 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * ** * * *
15416759 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATC-GAACCGAGCATTACGGCAA
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGGTAG
* * ** * * ** *
15416823 CAGGATCGACAACACACAGAGGGGGACCCAGTCGATCCCTGGCTTAAGCATCCCACCCCTCTGGC
195 CAGGATCGGCAGCACGTAGAGGGGGACCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
15416888 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
259 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * * * *
15416953 AGTATACGGAGTTAATTCCCAGTCTAAGATC-GGTCTGAACCGAGGGTTATGGTAGCACATGCAG
324 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCACATGCTG
* * * * **
15417017 GGCCCGGGCATGTGCTGGTGCCGCATTTTTCTACGTCGGGGCACCATCGCCAGAGCATCGTCGGA
388 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * *
15417082 GAACCTGACTGGCGGCATTGGGGTTTCGACGATCGAGGGGGAC-GGGGGGTGTGCGCACATGATG
453 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
15417146 TGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCTCTTATCCCTCATCAAACCTCGAGAACTC
517 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15417211 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
582 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15417276 ATGGGGACACTTTTTTCAAATGGTCCACAAAAAGCTCTGTACACTTGGAGTTGTTAGGCTG-ATT
647 ATGGGGACACTTTTTTCAAATGGT-CAC-AAAATCT-TGTACACTTCGAGTTTTTA-GCTGAATT
* * * *
15417340 TTTTTATGCATGCC-AACAAAATACAAGGATCACGTTTCTACCCAAGTCTGGGGCCAAAACGCCT
708 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACG--TCTA-CCAAGTTTGGGGCCAAAACTCCT
**** * * **
15417404 TTGGGAAAAATTTTAAAAAATCCCGAACCGTATAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
770 TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
15417469 ACTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
835 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
15417534 AAA
900 AAA
* * * * ***
15417537 ATGGCATTAGCCTGCAGAAATAAGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCATTA
1 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * * * * * *
15417602 CTTATGCATCCCGTCTCTCTGGCTGGCATAGT--------GCCCGCCCGCCTGCTCGTATCGTCA
66 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * *
15417659 GTTGACTTCGACATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
15417708 TAAGGGTTAC
Statistics
Matches: 6438, Mismatches: 820, Indels: 193
0.86 0.11 0.03
Matches are distributed among these distances:
857 1 0.00
858 126 0.02
859 37 0.01
861 1 0.00
864 1 0.00
867 2 0.00
869 1 0.00
870 28 0.00
871 85 0.01
872 77 0.01
873 2 0.00
878 1 0.00
882 7 0.00
883 235 0.04
884 1 0.00
886 2 0.00
892 6 0.00
893 368 0.06
894 192 0.03
895 188 0.03
896 591 0.09
897 22 0.00
898 31 0.00
899 426 0.07
900 782 0.12
901 831 0.13
902 1366 0.21
903 970 0.15
904 12 0.00
908 46 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGC
AGGATCGGCAGCACGTAGAGGGGGACCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
Found at i:15413374 original size:26 final size:26
Alignment explanation
Indices: 15413338--15413390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15413328 GTTGACTTAG
15413338 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
15413364 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15413390 G
1 G
15413391 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:15414284 original size:26 final size:26
Alignment explanation
Indices: 15414232--15414284 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15414222 GTTGACTTAG
* *
15414232 GCATACGGAGTTCAATCCTAATTTAA
1 GCATACGGAGTTCAATCCCAATCTAA
*
15414258 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
15414284 G
1 G
15414285 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:15415170 original size:26 final size:26
Alignment explanation
Indices: 15415134--15415184 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15415124 TGACTTAGGG
* *
15415134 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
15415160 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
15415185 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:15416970 original size:26 final size:26
Alignment explanation
Indices: 15416930--15416980 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15416920 TGACTTAGGC
*
15416930 ATACGAAGTTCATTCCCAGTCTAAGT
1 ATACGAAGTTAATTCCCAGTCTAAGT
*
15416956 ATACGGAGTTAATTCCCAGTCTAAG
1 ATACGAAGTTAATTCCCAGTCTAAG
15416981 ATCGGTCTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTAATTCCCAGTCTAAGT
Found at i:15418577 original size:26 final size:26
Alignment explanation
Indices: 15418541--15418593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15418531 GTTGACTTAG
*
15418541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15418567 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15418593 G
1 G
15418594 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15419450 original size:26 final size:26
Alignment explanation
Indices: 15419421--15419472 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15419411 TGACTTAGGC
*
15419421 ATACAAAGTTTATTCCCACTCTAAGA
1 ATACAAAGTTGATTCCCACTCTAAGA
* *
15419447 ATACGAAGTTGATTCCCAGTCTAAGA
1 ATACAAAGTTGATTCCCACTCTAAGA
15419473 TCGGACCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (26 bp):
ATACAAAGTTGATTCCCACTCTAAGA
Found at i:15421083 original size:159 final size:159
Alignment explanation
Indices: 15420822--15421176 Score: 358
Period size: 159 Copynumber: 2.2 Consensus size: 159
15420812 CGTTTTGTCC
* * * *
15420822 GTTGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAGATAGGACCGAACCGAGGGTTGCAGCAGC
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACCGAACCGAGGGTTGCAGCAGC
* * * *
15420887 AGGACCAGCAGCACGCAGAGGTGGATCCAACCAATCCCCGACTTGTA-CATC-CTGCCCCTCTCG
66 AGCACCAGCAGCACGCAGAGGGGGATCCAACCAATCCCCGACTAG-AGCATCGC-GCACCTCTCG
* * *
15420950 TCGACTGAGTG-CGCGCATGCTCATTTCATGG
129 CCGACTGAGCGAC-CACATGCTCATTTCATGG
* * * ** *
15420981 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGGTAGC
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACCGAACCGAGGGTTGCAGCAGC
* * * *** * * *
15421046 AGCATCGGTAGCACGCAGAGGGGGA-CTCGGTCGATCCCCGGCTAGAGCATCGCGCACCTCTGGC
66 AGCACCAGCAGCACGCAGAGGGGGATC-CAACCAATCCCCGACTAGAGCATCGCGCACCTCTCGC
* * *
15421110 CGGCTGAGCGACCACATGCTCGTTTCGTGG
130 CGACTGAGCGACCACATGCTCATTTCATGG
* **
15421140 GTTAACTTAGGCATACGGAGTTCATTCCTGGTCTAAG
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15421177 CATACGGAGT
Statistics
Matches: 160, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
158 2 0.01
159 156 0.98
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACCGAACCGAGGGTTGCAGCAGC
AGCACCAGCAGCACGCAGAGGGGGATCCAACCAATCCCCGACTAGAGCATCGCGCACCTCTCGCC
GACTGAGCGACCACATGCTCATTTCATGG
Found at i:15421186 original size:26 final size:26
Alignment explanation
Indices: 15421150--15421202 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15421140 GTTAACTTAG
15421150 GCATACGGAGTTCATTCCTG-GTCTAA
1 GCATACGGAGTTCATT-CTGAGTCTAA
15421176 GCATACGGAGTTCATTCTGAGTCTAA
1 GCATACGGAGTTCATTCTGAGTCTAA
15421202 G
1 G
15421203 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTGAGTCTAA
Found at i:15422079 original size:26 final size:26
Alignment explanation
Indices: 15422042--15422094 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15422032 GTTGACTTAG
15422042 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15422068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15422094 G
1 G
15422095 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15422960 original size:26 final size:26
Alignment explanation
Indices: 15422930--15422982 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15422920 GTTGACTTAG
15422930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15422956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15422982 G
1 G
15422983 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15423868 original size:26 final size:26
Alignment explanation
Indices: 15423832--15423884 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15423822 GTTGACTTAG
15423832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15423858 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15423884 G
1 G
15423885 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15424771 original size:26 final size:26
Alignment explanation
Indices: 15424735--15424787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15424725 GTTGACTTAG
*
15424735 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15424761 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15424787 G
1 G
15424788 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15425978 original size:875 final size:875
Alignment explanation
Indices: 15421176--15432429 Score: 7869
Period size: 900 Copynumber: 12.5 Consensus size: 875
15421166 CCTGGTCTAA
** * * * **
15421176 GCATACGGAGTTCATTCTGAGTCTAAG-ATCGGATCGGACCAAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCGGATCAGATCAAGGATTGTAACAGCACATGCTGG
* * * * *
15421240 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCG-TCAGGGCACCATCGTCGGAGCATCGCCGAA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCGTCGGA
* * * *
15421304 GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGGTGGTGTGTGCACATGAT
130 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGAT
* *
15421369 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
15421434 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-GATAGCCATTAAAGTGTCTG
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTG
** *
15421498 AAAAAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
15421563 TTTGTGCATGCCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT-CTTTCGA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * *
15421627 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
453 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
* *
15421692 TCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCA-AAAAAC
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-
* * *
15421756 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATTGATCCACGGC
582 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** * *
15421821 TTGCGCATCCCGTCTCTCTGGACAGCGTAGT--------GCCCGCCCGCTCATTTTGTCCGTTGT
647 TTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
* * * * * *
15421878 CTTAGGCATACAGAGTTCCTTCTCAGTCTAAGAT-AGGA-CTGAATCGAGGGTTGCAGCAGCAGG
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACT-GAGGGTTGCGGCAGCAGG
* * * * * * * * *
15421941 ACCGGCAGCACGTACAGGGGGATCC-AGCCAATCCCCGGCTTGTGCATCCCGCCCCTCTCGTCGG
775 ATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
***
15422005 CTGAGCATGCGCACGCTCGTTTCGTGGGTTGACTTAG
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15422042 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGA--TCA----GA-TC--A-A--GGAT-----
* * * *
15422107 CGAGGGTTACGACAGTACATGCTGGGCTTGGGCATGTGCTGGTGCCCCATTTTTCTTCG-TCGGG
48 ----TG-TA--ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGG
* ** * * * * ** * *
15422171 GCACGATCGTAGGAGCATCATCGGAGAAGCTGACCGGCGGTATTGGGGTTTCAACGGTCGGGGCG
105 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * *
15422236 GCCGGGGGGGTTGTACGGACATGATATGCGA----TG--GG----T-G--C------TGG-----
170 GCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
15422277 ------T--TC--A-----AGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGC
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15422327 TGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
15422392 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCATA-AAAAATGCAAGGATCACGGCTACCA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCA
* * * * * *
15422456 AGTTTGGGGCCAAAACTCCTTTCG-AAAAATTTTAAAAAATCTCGAATCGCAAAAAGTTTCGAAA
428 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * * * *
15422520 ACCATGAAAAATAGAAAACTAGTCGTCTTGCCATTAAACTTCACGTGATGGCTTAAGGGACCATT
493 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * * *
15422585 ATATGAATTTAAAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGACTAAACCCA
558 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * * *
15422650 CCTACCACCCTATCGATCCATGACTTACGCATCCTGTCTTTCTGGTCGGCATAGTGCCCGCCCAG
623 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC-G
* * * *
15422715 -CCGCTCGTTCGCTCGTTTCGTCTGTTGGCTCAGG-AGTACGAAGTTCATTCCCAGTCTAAGATC
687 CCCGC-C---CGCTCGTTTCATCGGTTGGCTTAGGCA-TACGGAGTTCATTCCCAGTC-----T-
* * * *
15422778 GACAGCATGCAGAGGGGGACCCAGCCGATCCCCGAGGGTTGCGGTAGCAGGATCGACAGCATGCA
741 -A-AG-AT-C--A----GA-CCA---GA---CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * *
15422843 GAGGGGGACCCGA-CTGATCCCCGACTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGTCCGCAC
789 GAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
15422907 GCTTGTTTCATGGGTTGACTTAG
853 GCTCGTTTCGTGGGTTGACTTAG
*
15422930 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGA--TCA----GA-TC--A-A--GGA-T---T
** ** *
15422995 CGAGGGTTGCGGCAGCACATGCTGGGCTCATGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGAG
49 -----G-T--AACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGG
* * * * * * * * * *
15423059 GCACCATCACTGCAGCATCG-CTGAAGAACCTGATCGACGACATTGGGGTTTCGACGATTGGGGG
105 GCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG
* *
15423123 GGCCGGGGGAGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCC
169 GGCC-GGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * **
15423188 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATTTTTGATTTTACAGGTTT
232 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
15423253 GCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTAT
297 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
15423318 ACGCTTCGAGTTTTTAGCTG-ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
362 ACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * *
15423382 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAACTTTAAAAAATCCTGAACCGTAAAAAGTTTTAA
426 CAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * *
15423447 AAATCATGAAAAATAGAAGACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
491 AAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
15423512 TCGAATTAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
556 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
15423577 CACCTACCACCCTATCGATCCACGACTTGTGCATCCCGTCTCTCTCGCCGACGTAGCGCCCGCCC
621 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC
** *
15423642 GCCCGCCCGCTCGTTTTGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
686 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * ** * * * * *
15423707 CAGACTGAGGGTTGTGGTAGTAGGATTAGCAACACGTAGAGGGGGACCTGACCGATCCCCAGCTT
751 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * * * *
15423772 GTGCATCCCGCCCCTCTAGCCGACTGAGCACCCGAACGCTTGTTTCGTGGGTTGACTTAG
816 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15423832 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAA-GATTGGACTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGA--TCA----GA-TC-AAGGATT-G--T---
*
15423896 CCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCTGGG
51 --AA---------CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGG
* * * * * * * * *
15423961 GCACAAACGTCAGAGCATCGCCGGAGAACCTGACCGACGGTATCGGAGTTCCGGCGATCGGGGGG
105 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* **
15424026 GCCGGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAACCCCCT
170 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
15424091 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAAGTTTGCT
235 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15424156 GCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
300 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
15424221 CTTAGAGTTTTTAGCTCAATTTTTTTAG-GTATGCAAAAAAAAATACAAGGATCACGTCTACCAA
365 CTTCGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * *
15424285 GATTGGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
429 GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * *
15424350 TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
494 TCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
**
15424415 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTTGAAATATGAAGATGTGCCTAAACCC-C
559 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
15424479 CTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTACTGCCCACCCGTC
624 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCC
** * * *
15424544 CGCCCGTCAGCTCGTTTTGTCGGTTGGCTTATGCATACGGAGTTCATTGCCAGTCTAAGATCGGA
689 CG-CC--C-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
15424609 CCGGACCGAGGGTTGTGACAGCAGGATCGGCAGCATGCA-ATGGGGGACTCGGTCGATCCCCGGC
750 CCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGGACCCGATCGATCCCCGGC
* * * *
15424673 TTGTGCATCTCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGGGGGTTGACTTAG
814 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * **
15424735 GCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCA-TTCCCA-G--TCTAAGATCGGA--
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGA--TCAGAT-CAAGGATTGTAACAGCACATG
* * * * * ** * ** * *
15424794 CT-GGATCGAGG-GT-TGC-GGT--AGCA-TATGCTGGGCTCGGGCATGTGATGGTGCCGTATTT
62 CTGGGCTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCA--CCAT--CGCCGGA---
* * * * *** *
15424852 TTCTTCGTCGGGGGA-CT-A---GCGGCATTGGGGTTCCAATGATCGGAGGGGCCGGGGGGGTGT
119 -GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGT
* * * *
15424912 GCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCTCTTATCAAA
183 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
15424977 CCTCAAGAACTCACACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATT
248 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
15425042 AAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
313 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
15425107 GCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTTCCAAGTTTGGGGCCAAAA
378 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * **
15425172 ATCCTTCCGAAAAACTTTTAAAAAATCCCGGACCGTAAAAAGTTTTGAAAATCATGAAAAATAAA
443 ATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAA
* * *
15425237 AAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAG
508 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
15425302 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTG
573 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
15425367 ATCCACGGCTTGCGCATCCCGCCTATCTAGCCGGCGCAATGCCCGCCCGCCCGCCCACTCGTTTC
638 ATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* * * * *
15425432 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCCAAGATAAGATCAGACTGAGGGTTGCGG
703 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGG
* * * * *
15425497 TAGTAGGATCGGTAGCACGCAGAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCT
768 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
15425562 GGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGATTTAG
833 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
15425605 GCATACGGAGTTCATTCCCATTCTAAG-ATTGGATCGGATCAAGGATTGTAACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCGGATCAGATCAAGGATTGTAACAGCACATGCTGG
** *
15425669 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCAAAGCATC-ACAGGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCGTC-GGA
* *
15425733 GAACCTGACCAGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGAT
130 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGAT
* * *
15425798 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCTCTCATCAAACCTTGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
15425863 CACACCCCCTTAAATAGCATTTGAGATTTTA-ATGGTTTGCTACCAATAGCCATTAAAGTGTTTG
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* ** *
15425927 AAATGGGGAAACTTTTTTTGAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTG
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-
* *
15425992 TTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCTTCTG
387 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * *
15426056 AAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTC
452 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
*
15426121 GTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
15426186 TGGCATTGGCACACATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
582 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
15426251 CTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCTGCCCGCCTGCTCGTTTCATTGG
647 TTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCATCGG
* * * *
15426316 TTGGCTGAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGCAACA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
** * * * ** * *
15426381 GGATCTACAGCACACAGAGGGGGACCCGATTGATCCTCGGCTTATGCATCTCGCCCCTTTGGCCG
773 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
15426446 GCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAG
838 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15426484 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAATCTAAGATCGGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGG------------ATC--AGATC--A-AGGAT
* * * * *
15426549 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGG
48 ----TG-TA--ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGG
* * * * * * *
15426614 TACCATCGTCGAAGCATCGTCGGAGAACCT-ACCGGTGGCATTGGGGTTCCGAC-ATTGGGCTCG
106 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG--GG
* * ** * ** ** * * * *
15426677 GGCATGTGCTGGTGT-CGTATTTTTTTTCGTCGGGGCACCATCGCCGGAGCATCACCGAGAACCT
169 GGC-CGGGGGGGTGTGCGCA--CATGAT-GT----G--CGAT-G--GGTGC-T----G-GTACTT
* *** ** ** *** * **** ** * * * * *
15426741 GACCGAC-GGCATTGG---GGT-TCCGACGATCGAGGGGGC-CGGGGGGGCATGCACACATGATG
215 GGCC--CTTATATTGGCCCCCTATCCCTC-ATC-A--AACCTCGAGAACTCACACCCCCTTAAAG
* ** * * * ** ** * * **
15426800 TGCGATGGGTGCTTTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTC-GAGAA-
274 AGC-ATTTGAGATTTTAC-AGG---TT-TGCT-G-CCAGTA--GC-CATTAAAGTGTCTGA-AAT
** *** ** * *** * **
15426862 -GTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGT
327 GGGGAC-ACTTTTTTCA-A--A--TG-G---TCACA-AAAT-CT---TGTA-CAC-TTCGAGT-T
** ** * ** * * ** * ** * *
15426925 CTGAAATGGGGACACTTTTTT-TAAATGGTCACCAAATCTTGCACA-CTTCGA-GTTTTTAGCTA
374 -T-TTA-GCTGA-ATTTTTTTGTGCAT-GCCAACAAA-AATACA-AGGATC-ACG--TCTA-C-C
*** ** ** *
15426987 AATTGTTTTATGCATTTCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCTAAAACACC
427 AA--GTTTGGGGC----C---AAAAAT-C---CTTC-CG---AAAAAATTT-----TAAAA-A--
* ** *** * ** * * **
15427052 TTCCTAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAAC
467 ATCC---CGAACCGTAAAAAGT-TT----C--AAAAA-TCATGAAAA--ATAAAAAA-CG-AGTC
* *
15427117 AAGTC--GTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
517 --GTCTTGCCATG--A--AA-CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
15427180 ATAAAAATGGCATTGGCACACAGAAATATGAAGATAGT-TCTAAACCCACCTACCACCCTATCGA
575 ATAAAAATGGCATTGGCACGCAGAAATATGAAGAT-GTGCCTAAACCCACCTACCACCCTATCGA
* * * * ** ** *
15427244 TCCACGGCTTACGCATCCCGCCTCTCTGGTCGATGTAGCACCCGCCCTCCCGTCCGCTCGCTCGT
639 TCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG--C-C-CGCTCGT
* * *
15427309 TTCATCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA-ACC-GAACTGAGAGTT
700 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTT
** * *
15427372 -----------A-CGGCAGCACATAGAGGGGGACCCGA-CAGATCCCTGACTTGCGCATCCCGCC
764 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCC
* * **
15427424 CCTTTAGCCGGCTGATTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
828 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
15427472 GCATACGGTGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA-GATTGGATCAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGA--TCA----GA-TC-AAGGATT-G-T---A
* **
15427536 CCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATAGTTCTTCG-TCGG
52 ---A---------CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GG
* *
15427600 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
104 GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG
* * * *
15427665 GGTCGGGGTGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCC
169 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
15427730 TATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTAC
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15427795 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTAC
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
15427860 ACTTCGATTTTTTAGCTGAATGTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
15427925 GTTTGGGGCCAAAAATCCTTCCGAACAAATTTTAAAAAATCCTGAACC-TCAAAAAGTTTCAAAA
429 GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAA
* *
15427989 ATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
493 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
15428054 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCA
558 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * ** * *
15428119 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCCTCTCTCTAGGTGACGTAGTGCCCGCCTGC
623 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGC
* * * * *
15428184 CCGCCCGCTCCTTTCATCGGTTGGCTTAGGCATAC-GATGGTCATTCCCAGTCTAAGATCGGTCT
688 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACC
* * * * *
15428248 GGACTGAGGGTTGCTGCAGCAAGATCGGCAGCACGCAGAGGGGGA-CCTAGCCGATCCCCGGCTT
752 AGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTT
* * * * * *
15428312 GTGCATCCCGCCCCTTTGGCAGACTGAGCGACCGCACGCTCGTTTTGTGGGTTGACTTAG
816 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15428372 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAA-GATCAAATCAAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGA--TCA----GA-TC-AAGGAT----T----
* * * * *
15428436 CCGAGGGTTACGACAGCACGTGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
49 ------G-TA--ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGG
* * *
15428501 G---CA----C----CATCGTCGGAGAACCTGGCCGGCGGCATTGGGGTTTCGACGATCGGGGGG
105 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * *
15428555 GCC--GGGGG-GTACGCACATGATGTGCGGTGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCT
170 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
15428617 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
235 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
15428682 GCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTGGTACA
300 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
15428747 CTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATTACGTCTACCAAG
365 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
15428812 TTTGGGGCCAAAACTTCTTTCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAAT
430 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * **
15428877 CATGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGAATTGT
495 CATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
15428942 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
560 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * ** * *
15429007 TACCAGCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAATCGACGTAGTGCTCGCCCGTCT
625 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCG-CC--C-
* *
15429072 GCCCGCCCGTTCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
686 GCCCG-CC---CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
15429137 GGATCGGA-TCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGTGGGGGACCCGGTGGATCCCT
747 AGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * * * * *
15429201 GACTTGCGCATCCTGCCCCTCTGGTCGGTTGAGCACCCGTACGCTCATTTCTTGGGTTGACTTTG
811 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * * *
15429266 GTATACGAAGTCCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCCA-G--TCTAAGATCAGA--
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGA--TCAGAT-CAAGGATTGTAACAGCACATG
* * * * * * ** * * ** *
15429325 CCGGACT-GAGG-GT-TG-TGGTAGCAGGATCGGTAGC-ACG-TAGAGGGGGACC-TAACC-GAT
62 CTGGGCTCG-GGCATGTGCTGGT-GCCGCAT--TTTTCTTCGCT---GGGGCACCATCGCCGGAG
* * ** * * ** * *** * * * *
15429382 CCTCGGCTTACGGATCC-CACCCCTCTGGCCTGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGA
120 CATCGTCGGA--GAACCTGA-CCGGC-GGCAT--TG-G-G-GTTC-CG-GCG-ATCG-GGG-GGG
* *** * * * * ** ** * * * *
15429446 CTTAGGCATACGGAGTTCATTCCCATTCTAAGC-ATACGGG-AC-CGTAC---GCTCGTT-TCTT
171 C--CGG--GGGGGTGTGC--GCACATGATGTGCGAT--GGGTGCTGGTACTTGGC-CCTTATATT
**** *** * ** * ****** ** **
15429504 GGGTTGACT-TTGGT-ATACGAAGTACAT-GATG-TGTGATGGGTGCTT--TTA-C--TTG-GCC
227 -GGCCCCCTATCCCTCAT-C-AA--ACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * ** ** * ** ** *** **
15429559 CTTACA--TTGGCCCCCTA-TCCCTCATCAAA-CCTC-GAGAA--GTCACAACCCCTTAAAGAGC
286 TTTACAGGTTTGCTGCC-AGTAGC-CATTAAAGTGTCTGA-AATGGGGAC-ACTTTTTTCA-A--
* *** * * ** *** ** *
15429617 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGGGGACACTTTTTT-
344 A--TG-G---TCACA-AAAT-CT---TGTA-CACTTCGAGT-T--TTTA-GCTGA-ATTTTTTTG
*** * ** * * *** * *** **
15429681 CAAATGGTC-AC-AAAAT-CTTGTA-CAC-T-T-TC-AGTTTTTAGCTGAATTTTTTTGTGCATG
392 TGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAAATCCT-T-C---
* * ** * * * *
15429738 CCAACAAAAATACAAGGATCACGTCTATCATGTTTGGGCCCAAAACACCTTCCAAAAAAATTTTA
450 CGAA-AAAATTTTAA--A--A-----A--A----T---CCC--GA-ACCGT----AAAAAGTTTC
* * * * * ** *
15429803 AAAAATCCCGAACTACAAAAAATTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATG
489 AAAAAT--C--A-T--GAAAAA--T-AAAAAAC--G---AGTCG---TCTTG-C--CATG--A--
* *
15429868 AAACTTCACGTGAAGGCTTAAGGGACCATTATATGAGTTTACAAGCCATAAAAATGGCATTGGCA
529 AA-CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
15429933 TGTATAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCAATCCACGGCTTGCGCATCCT
593 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
15429998 GTCTCTCTAGCCAGCGTAGTGCCCGTCTGCCTGTCCGCCTGCTTGTATCGTCGGTTGGCTTAGGC
658 GTCTCTCTAGCCGGCGTAGTGCCCG-C--CC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * *
15430063 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCACC
719 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * *
15430128 ACGCAAAGGGGGACTCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGATG--
784 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-CGCC
**** *
15430191 -G-A-G-T--TTAT--T-CCCAGAC-TAA
848 CGCACGCTCGTT-TCGTGGGTTGACTTAG
* * * * * * ***
15430210 GCATACGGAGTTCATTCCCAATCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCGGATCAGATCAAGGATTGTAACAGCACATGCTGG
* **
15430274 GCTCCGGCATGTGCTGGTGCTACATTTTTCTTCGTCT-GGGCACCATCGCCGGAGCATCGTCGGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCCGGAGCATCGTCGGA
** * * *
15430338 GAACCTGGTCGGTGGCATTGGGGTT-TGGCGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * *
15430401 TGTGGTGGGTGCTTGTACTTGGCACC-TATATTGGCCCCCTATCCCTCATCAAAACTCAAGAACT
195 TGCGATGGGTGCTGGTACTTGGC-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
15430465 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
15430529 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AACTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * **
15430593 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* *
15430658 AAAATTTTTAAGAAAA-CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTC
453 AAAAATTTTAA-AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
* * * * *
15430722 ATCTTGCGATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTTTGAATTTACGAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * **
15430787 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACAAC
582 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** * * * *
15430852 TTGCGCATCTCGTGTCCCTGGAGGGCTTAGAGCCCGGCCACCCGTCCGCCCGCCTGCTCGTTTTA
647 TTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCC-G-----C--CCGCCCGCCCGCTCGTTTCA
* * * *
15430917 TCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTTGCGG
704 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGG
* ** * ** *
15430981 AAGCAGGATCAACAGCATGCAGA-GGGGACCCGATCGATCCCCGGCTTTGCTTATCCTGCCCCTC
768 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC-TTGCGCATCCCGCCCCTC
* * * *
15431045 TGGCCGGCTAAACACCCGCACGCTCGTTTCGTGGGTGGACTTAG
832 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * ***
15431089 GCATACGGAGCTCATTCCCAGTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCGGATCAGATCAAGGATTGTAACAGCACATGCTGG
* ** * *
15431153 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCATCGGAGCATCGCCAGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCGTCGGA
* * * * * *
15431217 GAACCTGATCGGTGGCATTGGGGTTACGGCGATCGGGGGGGTCGGGCGGGTGTGCTCACATGATA
130 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT-
* *
15431282 G-GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15431346 GACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
15431411 AAAGGGGACACTTTTTT-ATAGTTGTCACAAAATCTTGTACTCTTCGATTTTTTAGCTG-ATTGT
324 AATGGGGACACTTTTTTCA-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-T
* *
15431474 TTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
387 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* ** * * *
15431539 AAATAATTTTAAAAAATCTTGAACCATAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTC
452 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
*
15431604 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
15431669 TGGCATTGGCACACAGAAATATAAAGATGTACCTAAACCCACCTATCACCCTATCGATTCACTGC
582 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
15431734 TTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCCACCCATCCGCTCATTTCATCGG
647 TTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC-GCC-CGC--CCGCTCGTTTCATCGG
* * ** *
15431799 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
** * * * ** *
15431864 GGATCGATAGCACGCAGAAGGGGACCC-AACTGATCCCCGGCTTGCTCATCCTACCCCTCTGGTC
773 GGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
15431928 GGCTGAGCGGCC-CACGCTCGTTTCGTGGGTTGACTTAG
837 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
15431966 GCATACGGAGCTCATTTCCAATCTAAGCATACGAAGTTCTTTCCCAGTCTACGATCGGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CG--G---------A-TC-A-GATC--A-AGGAT
* * * * * *
15432031 CGAGGGTTACGATAGCATATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTTG-TCGGG
48 ----TG-TA--ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGG
** * * * * * *
15432095 GCACCATCATCGGAGCATCGTCGAAGAACCTGACCGACGGCAATGGGGATCTGGCGATCGGGTGG
105 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* ** * * * *
15432160 GTC-GGGGGGTGTGTACACATGATGTGTGATAGGTGCTGGTACTTGGCCGTTATATTGGCCCCTT
170 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
15432224 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AA-AGCATTTGAGATTTTACAGGTTTGCT
235 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
15432287 GCCAGTAGCCATTAAAATGTCTTAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
300 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15432352 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAG
365 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
15432417 TTTGGGGCCAAAA
430 TTTGGGGCCAAAA
15432430 TACAAGGCTC
Statistics
Matches: 8238, Mismatches: 1471, Indels: 1324
0.75 0.13 0.12
Matches are distributed among these distances:
853 376 0.05
854 13 0.00
858 1 0.00
860 2 0.00
861 4 0.00
862 3 0.00
864 5 0.00
865 172 0.02
866 33 0.00
867 12 0.00
868 34 0.00
869 131 0.02
870 200 0.02
871 13 0.00
872 11 0.00
873 452 0.05
874 106 0.01
875 469 0.06
876 19 0.00
877 74 0.01
878 135 0.02
879 359 0.04
880 26 0.00
881 96 0.01
882 372 0.05
883 3 0.00
884 6 0.00
886 468 0.06
887 65 0.01
888 279 0.03
889 96 0.01
890 19 0.00
891 171 0.02
892 128 0.02
893 14 0.00
894 189 0.02
895 24 0.00
896 22 0.00
897 23 0.00
898 25 0.00
899 74 0.01
900 755 0.09
901 28 0.00
902 336 0.04
903 313 0.04
904 26 0.00
905 89 0.01
906 14 0.00
907 19 0.00
908 22 0.00
909 6 0.00
910 1 0.00
911 5 0.00
913 9 0.00
914 7 0.00
915 12 0.00
916 18 0.00
917 11 0.00
918 5 0.00
919 15 0.00
920 13 0.00
921 9 0.00
922 27 0.00
923 25 0.00
924 8 0.00
925 50 0.01
926 17 0.00
927 22 0.00
928 198 0.02
929 218 0.03
930 11 0.00
931 9 0.00
932 28 0.00
933 16 0.00
934 23 0.00
935 9 0.00
936 9 0.00
937 3 0.00
938 3 0.00
939 7 0.00
940 15 0.00
941 17 0.00
942 15 0.00
943 12 0.00
944 37 0.00
945 20 0.00
946 23 0.00
947 16 0.00
948 7 0.00
949 2 0.00
950 15 0.00
951 13 0.00
952 11 0.00
953 5 0.00
954 132 0.02
955 4 0.00
956 4 0.00
957 4 0.00
958 150 0.02
959 6 0.00
960 7 0.00
961 6 0.00
962 8 0.00
963 1 0.00
964 3 0.00
965 8 0.00
966 1 0.00
968 3 0.00
969 17 0.00
970 21 0.00
971 2 0.00
972 4 0.00
973 9 0.00
975 3 0.00
976 6 0.00
978 12 0.00
979 7 0.00
980 2 0.00
981 6 0.00
984 8 0.00
985 4 0.00
986 2 0.00
987 8 0.00
988 192 0.02
989 24 0.00
990 5 0.00
991 5 0.00
992 7 0.00
994 7 0.00
995 1 0.00
996 5 0.00
997 4 0.00
998 6 0.00
999 3 0.00
1000 15 0.00
1001 186 0.02
1002 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATCGGATCAGATCAAGGATTGTAACAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15426514 original size:26 final size:26
Alignment explanation
Indices: 15426484--15426536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15426474 GTTGACTTAG
* *
15426484 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAATCTAA
*
15426510 GCATACGGAATTCATTCCCAATCTAA
1 GCATACAGAATTCATTCCCAATCTAA
15426536 G
1 G
15426537 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAATCTAA
Found at i:15426752 original size:98 final size:98
Alignment explanation
Indices: 15426571--15426764 Score: 246
Period size: 98 Copynumber: 2.0 Consensus size: 98
15426561 CAGCACATGC
* * * *
15426571 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGTACCATCGTCGAAGCATCGTCG
1 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGCCGAAGCATCGACC
**
15426636 GAGAACCTACCGGTGGCATTGGGGTTCCGACAT
66 GAGAACCTACCGACGGCATTGGGGTTCCGACAT
* ** * ** * *
15426669 TGGGCTCGGGCATGTGCTGGTGTCGTATTTTTTTTCGTCGGGGCACCATCGCCGGAGCATC-ACC
1 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGCCGAAGCATCGACC
15426733 GAGAACCTGACCGACGGCATTGGGGTTCCGAC
66 GAGAACCT-ACCGACGGCATTGGGGTTCCGAC
15426765 GATCGAGGGG
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
97 9 0.11
98 72 0.89
ACGTcount: A:0.16, C:0.27, G:0.32, T:0.25
Consensus pattern (98 bp):
TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGCCGAAGCATCGACC
GAGAACCTACCGACGGCATTGGGGTTCCGACAT
Found at i:15427510 original size:26 final size:26
Alignment explanation
Indices: 15427472--15427524 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15427462 GTTGACTTAG
* *
15427472 GCATACGGTGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15427498 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15427524 G
1 G
15427525 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15428408 original size:26 final size:26
Alignment explanation
Indices: 15428372--15428424 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15428362 GTTGACTTAG
15428372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15428398 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15428424 G
1 G
15428425 ATCAAATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15429297 original size:26 final size:26
Alignment explanation
Indices: 15429268--15429318 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15429258 TGACTTTGGT
15429268 ATACGAAGTCCATTCCCAGTCTAAGC
1 ATACGAAGTCCATTCCCAGTCTAAGC
* *
15429294 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTCCATTCCCAGTCTAAG
15429319 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTCCATTCCCAGTCTAAGC
Found at i:15429444 original size:185 final size:185
Alignment explanation
Indices: 15429107--15429484 Score: 427
Period size: 185 Copynumber: 2.0 Consensus size: 185
15429097 GTTGGCTTAG
* * * *
15429107 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* **** * ** * *
15429172 GCACGCAGTGGGGGACCCGGTGGATCCCTGACTTGCGCATCCTGCCCCTCTGGTCGGTTGAGCAC
66 GCACGCAGAGGGGGACCCAACCGATCCCTGACTTACGCATCCCACCCCTCTGGCCGGCTGAGCAC
** * * *
15429237 CCGTACGCTCATTTCTTGGGTTGACTTTGGTATACGAAGTCCATTCCCAGTCTAA
131 CCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTCCATTCCCAGTCTAA
* * *
15429292 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGTGGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
15429356 AGCACGTAGAGGGGGACCTAACCGAT-CCTCGGCTTACGGATCCCACCCCTCTGGCCTGCTGAGT
65 AGCACGCAGAGGGGGACCCAACCGATCCCT-GACTTACGCATCCCACCCCTCTGGCCGGCTGAGC
* * * * *
15429420 GCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
129 ACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTCCATTCCCAGTCTAA
15429477 GCATACGG
1 GCATACGG
15429485 GACCGTACGC
Statistics
Matches: 158, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
184 4 0.03
185 154 0.97
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCAACCGATCCCTGACTTACGCATCCCACCCCTCTGGCCGGCTGAGCAC
CCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTCCATTCCCAGTCTAA
Found at i:15433339 original size:27 final size:27
Alignment explanation
Indices: 15433309--15433361 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
15433299 TCTGGCTGGA
* *
15433309 TGAGCGGCCGCTCGCTTGTTTCGTGGC
1 TGAGCGCCCGCTCGCTCGTTTCGTGGC
15433336 TGAGCGCCCGCTCGCTCGTTTCGTGG
1 TGAGCGCCCGCTCGCTCGTTTCGTGG
15433362 GTTGACTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.04, C:0.32, G:0.36, T:0.28
Consensus pattern (27 bp):
TGAGCGCCCGCTCGCTCGTTTCGTGGC
Found at i:15435629 original size:864 final size:863
Alignment explanation
Indices: 15433428--15437674 Score: 5347
Period size: 872 Copynumber: 4.9 Consensus size: 863
15433418 GTCTAAGATC
* * *
15433428 AGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCT
1 AGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* ** * * * *
15433493 TCGTCAAGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATC-GACAGCATTGGGCTTACGACG
66 TCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA-AGCATTGGGGTTCCGACG
15433557 A-ACGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
130 ATA---GGGGG-C-AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
15433621 ATTGGCCCCTTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
190 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
** *
15433686 ACAGGTTTGCTGCCAGTAGCTGTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
255 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
15433751 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATACCAAAAAAAATACAAGGATCA
320 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *
15433816 TGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCAAAAAAATTTCAAAAAAAATCTCGAACCGTAA
385 CGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTT--TAAAAAATCTCGAACCGTAA
*
15433880 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
447 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
15433945 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATC
512 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
15434010 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
577 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * *
15434075 GTGCCCACCCGCCCGTCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
642 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
15434140 AAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGTACACAGAGGGGCACCTGATCGA
707 AAGATCAGACCGGAC-GAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGG-ACCCGATCGA
* * *
15434205 TCCCCAGTTTGCGCATCCCGCCCCTCTA-GCCGGCTGAGCGCCCGCACTCTCGTTTCGTGGGTTG
770 TCCCCAGCTTGCGCATCCCGCCCCTC-AGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTG
* *
15434269 ACTTAGGCATACGGAGTTCATTCTCTGTCTAAG
834 ACTTAGGCATACGGAGTTCATTCAC--AC-AAG
* * * * * *
15434302 ATCGGATCAGACCGAGTGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTAATTT
1 A---GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
** * * * **
15434367 TCTTCCCCGGGGTACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-A
63 TCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGAAGCATTGGGGTTCCGA
* *
15434431 GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
128 -CGAT--AGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
15434496 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAGCCCCTTGAAGAGCATTTGAGATTTT
190 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
15434561 ATAGGTTT-CTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAA
255 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
15434625 AATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
320 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * ***
15434690 CGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTTGAATTTTAAAAA
385 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* * *
15434755 GTTTCAAAAATCATGAAAAATAGGAAACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
450 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
15434820 AGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAGGTGC
515 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
* * * *
15434885 CTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTTTGGCCGGCGTAGTG
580 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
*
15434950 CCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTC
645 CCCGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * *
15435015 TAAGATCAGACCGGATCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGAGGATGACCCGACCG
706 TAAGATCAGACCGGA-CGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGG-GGACCCGATCG
* * * * *
15435080 ATCCTCGGCTTGTGCATCCCGCCCCTCAGGCCGACTGAGCGCTCGCACACTCGTTTCATGGGTTG
769 ATCCCCAGCTTGCGCATCCCGCCCCTCAGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTG
15435145 ACTTAGGCATACGGAGTTCATTC-C-C-AG
834 ACTTAGGCATACGGAGTTCATTCACACAAG
* *
15435172 -GACCGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
1 AGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
15435236 TCATCGGTGCACCATCGCCGAAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTCCGGCGA
66 TCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGAAGCATTGGGGTTCCGACGA
*
15435301 TAGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
131 TAGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
15435366 CCCCTATCCCTTACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
196 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
15435431 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
261 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
15435496 GTACATTTTGAGTTTCTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
326 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
**
15435560 CCAAGTTTGGGTTCAAAACTCCTTCCGAAAAAATTTTAAAAAATAC-CGAACCGTAAAAAGTTTC
391 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTC
*
15435624 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
455 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
15435689 CATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
520 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
* * * * * **
15435754 GCCACCTACCACCCTATCGATTCACGGCTTCCGCATCCCGTCTCTCTGGTCGTCACAGT----GC
585 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * *
15435815 CCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATATGTAGTTCATTCCCATTCTAAGATCAG
650 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
15435880 ATCGGACCGAGGGTTACAGAAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCAGC
715 ACCGGA-CGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGA-GGGGACCCGATCGATCCCCAGC
* * * * **
15435945 TTGCGCATCCCGCCCCTCCGACTGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCA
778 TTGCGCATCCCGCCCCTCAGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCA
15436010 TACGGAGTTCATTCGCAGTCTAAGCATACAG
843 TACGGAGTTCATT--CA--C--A-C--A-AG
* * * * *
15436041 AGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGACAGCTCATGCTAGGCTTGAGCA
1 AG---A----C---C----A---GA-C---C-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** * *
15436106 TGTGCTGGTGTCGCATTTTTCTTCACCGTAGCACCATCGTCGGAGCATTGCCGGAGAACCTAACC
44 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * *
15436171 -GACAGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGCGCACATGATGCGTGATGGG
109 GGA-AGCATTGGGGTTCCGACGAT-AGGGGG-C-AGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
15436235 TGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
170 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
15436300 CAAAAAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
235 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
15436365 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAACTTTTTTGTGCATGC
300 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * ** *
15436430 CAACAAAAATACAAGGATCACCTCTACTAATTTTGATGCCAAAACTCCTTCTGAAAAAATTTTAA
365 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * **
15436495 AAAATCTCGAATCGCAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
430 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
15436560 AA-TTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAGAAATAGCATTGGCA
495 AACTT-CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * * *
15436624 CACAGAAATATGAAGATGTGCCTAAAGCCACTTACCAACCTATCGATCCATGGCTTGTGTATCTC
559 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
15436689 GTCTCTCTGGCCGACAG-AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATA
624 GTCTCTCTGGCCGAC-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * ** *
15436753 AAGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCAGTAGTAGGAACGGTAACACG
688 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCAGTAGCAGGATCGACAGCACG
* ** * * * *
15436818 TAGAAGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCCCACA
752 CAG-AGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCAGGCCGACTGAGCGCCCGCA
* ** * *
15436883 TACTCGTTTCGTGGGCAGACTGAGGCATACGAAGTTCATTC-CAAGTCTAAG
816 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCAC-A--C-AAG
* ** * * * *
15436934 ATCAGACCAAACCGAGGGTTAAGGCAGCAAATACTGGGCTCGGGCATGTGCTGGTGACGTATTTT
1 ---AGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
** * * * * * * * *
15436999 TCTTTGTCGGGGCACCATCGCCGGACCATCGTCGGAGAACCTAACCGGCAGCATTTGGGTTTCAA
63 TCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGAAGCATTGGGGTTCCGA
* * * * *
15437064 CGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGAACTTGGCCCATATAT
128 CGATAGG-GGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
15437129 TGGCCCCCTATCACTCATCAAACCTCGTGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTAC
192 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
15437194 AGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
257 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
15437259 TCTAGTACACTTCGAGTATTTAGCTGAATTTTTTTATGCACGCCAACAAAAATACAAGGATCACG
322 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
15437324 TCTACCAAGTTTGGGGCTAAAAGTCCTTCC-AAAAGAATTTTAAAAAATC-CTGAACCGTAAAAA
387 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCTC-GAACCGTAAAAA
* * * * * *
15437387 GGTTT-GAAAATCATCAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTA
450 -GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
**
15437451 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
514 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
** ** * * **
15437516 CCTAAACCCACCTACCACCCTATCGATCCAATGCCCGC-CATCCCGTCTATCTGGTCGGTGTAGT
579 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
** *
15437580 GCCCGCCCGCCCGTTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
644 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15437645 GATCGGACCAGACTGAGGGTTGCAGCAGCA
709 GATCAGACCGGAC-GAGGGTTGCAGTAGCA
15437675 AATGCTAGGC
Statistics
Matches: 2936, Mismatches: 356, Indels: 165
0.85 0.10 0.05
Matches are distributed among these distances:
856 172 0.06
857 2 0.00
858 1 0.00
860 9 0.00
861 1 0.00
864 388 0.13
865 83 0.03
866 110 0.04
869 2 0.00
870 5 0.00
871 104 0.04
872 625 0.21
873 9 0.00
874 249 0.08
875 122 0.04
876 176 0.06
877 111 0.04
878 2 0.00
879 1 0.00
880 1 0.00
882 1 0.00
886 1 0.00
887 2 0.00
888 1 0.00
889 1 0.00
891 3 0.00
892 101 0.03
893 8 0.00
894 5 0.00
895 201 0.07
896 260 0.09
898 1 0.00
900 177 0.06
901 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (863 bp):
AGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGAAGCATTGGGGTTCCGACGA
TAGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGACCCGATCGATCCCCAGCTTG
CGCATCCCGCCCCTCAGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCACACAAG
Found at i:15436036 original size:26 final size:26
Alignment explanation
Indices: 15436007--15436059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15435997 GTTGACTTAG
* *
15436007 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15436033 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15436059 G
1 G
15436060 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15438220 original size:704 final size:706
Alignment explanation
Indices: 15436905--15438249 Score: 2033
Period size: 704 Copynumber: 1.9 Consensus size: 706
15436895 GGGCAGACTG
*
15436905 AGGCATACGAAGTTCATTCCAAGTCTAAGATCAGACCAAACCGAGGGTTAAGGCAGCAAATACTG
1 AGGCATACGAAGTTCATTCCAAGTCTAAGATCAGACCAAACCGAGGGTTAAGGCAGCAAATACTA
* *
15436970 GGCTCGGGCATGTGCTGGTGACGTATTTTTCTTTGTCGGGGCACCATCGCCGGACCATCGTCGGA
66 GGCTCGGGCATGTGCTGGTGACGTATTTCTCTTCGTCGGGG--CCA-C-CC-GACCATCG-CGGA
* * *
15437035 GAACCTAACCGGCAGCATTTGGGTTTCAACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTA
125 GAACCTAACCGACAGCATTGGGGTTCCAACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTA
* ** *
15437100 CGATGGGTGCTGGAACTTGGCCCATATATTGGCCCCCTATCACTCATCAAACCTCGTGAACTCAC
190 CCATGGGTGCTGGAACTTGGCCCATATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTAAC
*
15437165 ACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAAT
255 ACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
*
15437230 GGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTATTTAGCTGAATTTTTTTA
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCAAGTATTTAGCTGAATTTTTTTA
* *
15437295 TGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAGTCCTTCCAAAAGA
385 TGCACGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAGA
* * * *
15437360 ATTTTAAAAAATCCTGAACCGTAAAAAGGTTTGAAAATCATCAAAAATAAAAAACGAGTCATCTT
450 AGTTTAAAAAATCCCGAACCATAAAAAGGTTTAAAAATCATCAAAAATAAAAAACGAGTCATCTT
* **
15437425 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGAAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15437490 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAATGCCCGCC
580 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAATGCCCGCC
15437555 ATCCCGTCTATCTGGTCGGTGTAGTGCCCGCCCGCCCGTTCGCTCGTTTCGTCAGTTGGCTT
645 ATCCCGTCTATCTGGTCGGTGTAGTGCCCGCCCGCCCGTTCGCTCGTTTCGTCAGTTGGCTT
* * * * * * *
15437617 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCA-GCAGCAAATGCT
1 AGGCATACGAAGTTCATTCCAAGTCTAAGATCAGACCAAACCGAGGGTT-AAGGCAGCAAATACT
*
15437681 AGGCTCGGGCATGTGCTGGTGCCGTATTTCTCTTCGTCGGGG-CA-CC-ACCA-C-CGGAGAACC
65 AGGCTCGGGCATGTGCTGGTGACGTATTTCTCTTCGTCGGGGCCACCCGACCATCGCGGAGAACC
* * * * * *
15437741 TGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGCATGTGCGCACATGATGTGCCA
130 TAACCGACAGCATTGGGGTTCCAACGATCGGAGGGCCGGGGGG--TGTGCGCACATGATGTACCA
* * *
15437806 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACC
193 TGGGTGCTGGAACTTGGCCCATATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTAACACC
* * * *
15437871 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAATGGG
258 CCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
* * *
15437936 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGTG
323 GACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCAAGTATTTAGCTGAA-TTTTTTTATG
*
15438001 CATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-CTTCCGAAAA-A
387 CACGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-GTCCTTCC-AAAAGA
* * * *
15438064 AGTTTAAAAAATCCCGAACCATAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCT
450 AGTTTAAAAAATCCCGAACCATAAAAAGGTTT-AAAAATCATCAAAAATAAAAAACGAGTCATCT
*
15438128 TGCCATGAAACTTCACGTGAAGGCTTAAGAAACCATTGTATGAATTTACAAGCCATATAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGAAACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15438193 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
579 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
15438250 CGGCTTGCGC
Statistics
Matches: 573, Mismatches: 53, Indels: 22
0.88 0.08 0.03
Matches are distributed among these distances:
701 44 0.08
703 193 0.34
704 232 0.40
705 6 0.01
706 2 0.00
709 2 0.00
712 93 0.16
713 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (706 bp):
AGGCATACGAAGTTCATTCCAAGTCTAAGATCAGACCAAACCGAGGGTTAAGGCAGCAAATACTA
GGCTCGGGCATGTGCTGGTGACGTATTTCTCTTCGTCGGGGCCACCCGACCATCGCGGAGAACCT
AACCGACAGCATTGGGGTTCCAACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTACCATGG
GTGCTGGAACTTGGCCCATATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTAACACCCCC
CTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCAAGTATTTAGCTGAATTTTTTTATGCACG
CAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAGAAGTTTA
AAAAATCCCGAACCATAAAAAGGTTTAAAAATCATCAAAAATAAAAAACGAGTCATCTTGCCATG
AAACTTCACGTGAAGGCTTAAGAAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAATGCCCGCCATCCCG
TCTATCTGGTCGGTGTAGTGCCCGCCCGCCCGTTCGCTCGTTTCGTCAGTTGGCTT
Found at i:15439286 original size:26 final size:26
Alignment explanation
Indices: 15439257--15439306 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15439247 GACTTAGGCA
15439257 TACGGAGTTCATTCCCAATCTAAGCG
1 TACGGAGTTCATTCCCAATCTAAGCG
*
15439283 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
15439307 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCG
Found at i:15440954 original size:857 final size:851
Alignment explanation
Indices: 15438445--15441715 Score: 3642
Period size: 857 Copynumber: 3.8 Consensus size: 851
15438435 CGGACCGAGA
* * * * *
15438445 GTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGCCAGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
* * * * *
15438510 ---TC----C--C--CGGAGAACTTGACCGACGGCATTTGGGATT-CGGTGATTGGGGGGCCG-G
66 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA-TTGGGGTTCCGGCGATCGGGGGGCCGAG
* * *
15438562 GGGGGTGTGCACACCTGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
15438627 TCATCAAACCTCGACAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAG
195 TCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
15438692 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
259 TAGCCATTAAAGTGTCCGGAATGGGGACAC----TTC-AA--GT-------T-TT-TACA--TCG
* * * * *
15438757 AGTTTTTAGCT-GATTGTTTTTTTGCAAGCCAGCAAAAATACAAGGGTCACGTCTACCAAGTTTG
306 AGTTTTTAGCTAAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * ** *
15438821 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATG
370 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTG
* *
15438886 AAAAATAGAAAACAAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
435 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
15438951 ATTTACAAGCCATAAAAATGTCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCAACCAAC
500 ATTTACAAGCCATAAAAATGGCATTGCCA-TGCAGAAATAT-AAGATGTGCCTAAACCCACCTAC
* * * * *
15439015 CACCCTATCGATCCATGGCTTGCGCATCCCTTCTCTCT-GCCGGCATA--G--T----ACCCGCC
563 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCC
* * ** * ** * * *
15439071 TGCTCGTTTCATCGGTTGGCTTAGGCATACATAGTTCATTCCCAATCTAAGATTGGATCGGATTG
628 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * ** * * * * *
15439136 AGGGTTACGGCAGTAGGATCTGCAACACGTAGAGGGGGACCCGGCTGATC-CCCGACTTGCCCCT
693 AGGGTTACGGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCTCCAG-CTTGCGCAT
* * * * * * * * *
15439200 -CCTACCCCTCTGGCCGACTGAGCACTCGTACGCTCGTCTT-GTGGGTTGACTTAGGCATACGGA
757 CCCCA-CCCTCTAGCCGGCTGAGCCCCCATACGATCAT-TTCGTGAGTTGACTTAGGCATACGGA
* *
15439263 GTTCATTCCCAATCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGG
820 GTTCATTCCC-A-GT---C-TA---AG---------A-TC--AGA-CCGA----A-C-A-G
* * * * * *
15439324 GTTGCGGCAGCACATACTGTGCTCGAGCGTGTGCTGGAGTCGTATTTTTCTTCGTCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
* ** * *
15439389 TCGCCGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-G
66 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGAG
15439453 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
15439518 TCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCGTTTGAGATTTTACAAGTTTGTTGCGAGT
195 TCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
15439583 AGCCATTAAAGTGT-CTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCG
260 AGCCATTAAAGTGTCCGGAA-TGGGGACAC----TTC-AA--G--------T-TT-T-TACATCG
* * * * *
15439647 AGTTTTTAGCTGAATTTTTTTGTACATACCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
306 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
15439712 GGCCAAAACCCCTTCCAAAAAAATTTCAAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGT
371 GGCCAAAACTCCTTCCGAAAAAATTT--TAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGT
15439777 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
434 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
15439842 AATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATATACCTAAACCCACCTAC
499 AATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATAT-AAGATGTGCCTAAACCCACCTAC
* * *
15439907 CACCCTTTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-CCCTCGCCCGC
563 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCC-CGCCCGC
* * * * ** *
15439971 CCGCTCGTTCCATCGGTTGGCTTAGGCATATGAAGTTCATTTTCAGTCTAAGATCAGACCAGATT
627 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
*
15440036 GAGGGTTGCGGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCTCCAGCTTGCGCAT
692 GAGGGTTACGGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCTCCAGCTTGCGCAT
* * * * *
15440101 CCCGCA-CCTTTGGCCGGTTGAGCGCCCATACGATCATTTTGTGAGTTGACTTAGGCATACGGAG
757 CCC-CACCCTCTAGCCGGCTGAGCCCCCATACGATCATTTCGTGAGTTGACTTAGGCATACGGAG
* *
15440165 TTCATTCCTAGTCTAAGATTAGACCGAACCAAG
821 TTCATTCCCAGTCTAAGATCAGACCGAA-C-AG
* * *
15440198 GTTGCGACAGCGCATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTGTTCTTCGTCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
* * *
15440263 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCAGCTTTGGGGTTCTGGCGATCGAGGGGGCCGAG
66 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGAG
* *
15440328 GGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
15440393 TTATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
195 TCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
15440458 TAGCCATTAAAGTGTCCGGAATGGGGACACTTCAAGTTTTTAGCCTCGAGTTTTTAGCTTAATTT
259 TAGCCATTAAAGTGTCCGGAATGGGGACACTTCAAGTTTTTA-CATCGAGTTTTTAGCTAAATTT
*
15440523 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
323 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * **
15440588 AAAAAATTTTTAAAAATCTCGAACCATAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
388 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
*
15440653 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
453 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
15440718 TGGCACTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCATGGC
518 TGGCATTGCCATGCAGAAATAT-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
15440783 TTGTGCATCCCGTCTCTCTGGCCGACGTTGTGCCTGCCCGCCCGCCCACACATTTCGTCTGTTGG
582 TTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
15440848 CTTAGGCATACGGAGTTCATTCCCAGGCTAAGAT-AGGATCAGACTGAGGGTTACGGTAGTAGGA
647 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACTGAGGGTTACGGTAGTAGGA
* * * *
15440912 TCGGCAGCACACAGAGGGGGGCTCGACCGATC-CCAGGCTTGCGCATCTCTACCCTCTAGCCGGC
711 TCGGCAGCACACAGAGGGGGACCCGACCGATCTCCA-GCTTGCGCATCCCCACCCTCTAGCCGGC
* * *
15440976 TGAGCCCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
775 TGAGCCCCCATACGATCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
15441041 CAGACCGGACTG
840 CAGACCGAACAG
* *
15441053 GTTGCGGCCGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TCATTTTTCTTCGTTGGGGCACC
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGGCACC
* *
15441117 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGCGGGGCC-A
65 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGA
* * *
15441181 -GGGGGTGTACGCACATGCTGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCC
129 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
15441245 CTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
194 CTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * * *
15441310 TAGCAATTAAAGTGTCTGGAATGGGGACACTT----TTTTCAAAT-G-G---TCA-CAAAATCTG
259 TAGCCATTAAAGTGTCCGGAATGGGGACACTTCAAGTTTTTACATCGAGTTTTTAGCTAAAT-T-
*** * * *
15441365 GAATGGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGCGG------CTCCTTCC
322 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*
15441424 GAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
387 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
*
15441489 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAA
452 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * * *
15441554 ATGGCATTGTCACGTAGATATATAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGC
517 ATGGCATTGCCATGCAGAAATATAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * **
15441619 TTGTGCATCCCGTCTTTCTGGCCGGCGTAGTGCCTGCCCATCTGCTTGCTCGTTT-GCTCGGTTG
582 TTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCG-TCGGTTG
15441683 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
646 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15441716 CATACGGAGT
Statistics
Matches: 2090, Mismatches: 247, Indels: 153
0.84 0.10 0.06
Matches are distributed among these distances:
835 1 0.00
836 120 0.06
837 146 0.07
841 4 0.00
842 3 0.00
843 45 0.02
845 1 0.00
846 1 0.00
847 1 0.00
848 5 0.00
852 68 0.03
853 85 0.04
854 3 0.00
855 114 0.05
856 6 0.00
857 393 0.19
858 4 0.00
859 88 0.04
860 2 0.00
861 1 0.00
869 1 0.00
871 2 0.00
872 3 0.00
873 1 0.00
874 110 0.05
875 91 0.04
876 58 0.03
877 4 0.00
879 59 0.03
880 3 0.00
882 2 0.00
883 1 0.00
886 1 0.00
888 1 0.00
889 9 0.00
890 176 0.08
891 98 0.05
892 194 0.09
893 8 0.00
895 3 0.00
896 1 0.00
898 1 0.00
899 1 0.00
900 3 0.00
901 162 0.08
902 5 0.00
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (851 bp):
GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCCGGAATGGGGACACTTCAAGTTTTTACATCGAGTTTTTAGCTAAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGCCATGCAGAAATATAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATCGGC
AGCACACAGAGGGGGACCCGACCGATCTCCAGCTTGCGCATCCCCACCCTCTAGCCGGCTGAGCC
CCCATACGATCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GAACAG
Found at i:15441725 original size:26 final size:26
Alignment explanation
Indices: 15441689--15441741 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15441679 GTTGGCTTAG
15441689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15441715 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15441741 G
1 G
15441742 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15442713 original size:714 final size:714
Alignment explanation
Indices: 15441715--15443190 Score: 2198
Period size: 714 Copynumber: 2.1 Consensus size: 714
15441705 CCCAGTCTAA
* *
15441715 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTACGGCAGCACATGCTGG
* *
15441779 GCTCGGGAATGTGCTGGTGCTAGATTTTTCTTTGTCGGGGCACCGTCACCGGAGCATCACCGGAG
65 GCTCGGGAATGTGCTGGTGCTAGATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCACCGGAG
*
15441844 AACCTAACTGACGGCATAGGGGTTCTAACGTTCGGGGGGGCCGAGGGGGCGGGTTGTGCGCACAT
130 AACCTAACTGACGGCATAGGGGTTCTAACGATCGGGGGGGCC-AGGGGGCGGGTTGTGCGCACAT
** *
15441909 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGA
194 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGA
* *
15441974 ACTCACACCCCCTTAGAGAGCATTTGAGATTTTACAGCTTTGCTCCCAGTAGCCATTAAAGTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTCCCAGTAGCAATTAAAGTGTC
* *
15442039 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACCTCGAGTTTTTAGCTGAATT
324 TGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATT
* *
15442104 TTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCC
389 GTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
**
15442169 GAAAAAATTTTAAAAAATCTCAATCC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
454 GAAAAAATTTTAAAAAATCTCAA-CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
* * * *
15442233 CGTCTTTCCATGAAACTTTACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
518 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAA
* *
15442298 ATGGCATTGGCATC-TAGAAATATGAAGATGTGCCTCAACCCACCTACCACCTTATCGATCCACG
583 ATGGCATT-GCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
15442362 GCTTGCGCATCCTGTCTCTCTGGTCGGTGTAGTGCACGCCCGCCCGCCCACTCGTTTCGTCGGTT
646 ACTTGCACATCCCGTCTCTCTAGTC-G-G-AGTGCACGCCCGCCCGCCCACTCGTTTCATCGGTT
15442427 GGCTTAG
708 GGCTTAG
** *
15442434 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
15442499 CTCGGGCATTTGCTGGTGC-CGTATTTTTCTTCT-CCGGGGTACCATC-GCGGAGCATCGCCGGA
66 CTCGGGAATGTGCTGGTGCTAG-ATTTTTCTT-TGCCGGGGCACCATCACCGGAGCATCACCGGA
* * ** * *
15442561 GAACCTAACTGACGGCATTGGGGTT-TCGACGATCGGGGGGTTC-GGGGG-TGG-TGTGCGCAGA
129 GAACCTAACTGACGGCATAGGGGTTCT-AACGATCGGGGGGGCCAGGGGGCGGGTTGTGCGCACA
* * * *
15442622 TGATGTGCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCCCTCTTCAAACCTCAAG
193 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAG
* * * *
15442687 AACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCAATTAAAGTGT
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTCCCAGTAGCAATTAAAGTGT
* * *
15442752 CTGAAATGGGGACACATTTTTCAACTGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAAT
323 CTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAAT
* *
15442817 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
388 TGTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
15442882 CGAAAAAATTTTAAAAAATTTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGT
453 CGAAAAAATTTTAAAAAATCTCAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
15442947 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAA
518 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAA
15443012 ATGGCATTGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
583 ATGGCATTGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
* * * *
15443077 TTGCACATCCCGTCTCTCTATTCGGCGTGCCCGCCCGCCCGCCCACTTGTTTCATCGGTTGGCTT
648 TTGCACATCCCGTCTCTCTAGTCGGAGTGCACGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTT
15443142 AG
713 AG
* *
15443144 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTT
15443191 GCAGTAGCAG
Statistics
Matches: 683, Mismatches: 68, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
710 80 0.12
711 1 0.00
712 2 0.00
713 73 0.11
714 372 0.54
715 2 0.00
716 5 0.01
717 1 0.00
718 51 0.07
719 94 0.14
720 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (714 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGAATGTGCTGGTGCTAGATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTAACTGACGGCATAGGGGTTCTAACGATCGGGGGGGCCAGGGGGCGGGTTGTGCGCACATGA
TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTCCCAGTAGCAATTAAAGTGTCTG
AAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGT
TTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCTCAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATG
GCATTGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
CACATCCCGTCTCTCTAGTCGGAGTGCACGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAG
Found at i:15443332 original size:26 final size:26
Alignment explanation
Indices: 15443303--15443355 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15443293 GTTGACTTAT
15443303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15443329 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15443355 G
1 G
15443356 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15444224 original size:26 final size:26
Alignment explanation
Indices: 15444195--15444247 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15444185 GTTCACTTAG
* * *
15444195 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15444221 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15444247 G
1 G
15444248 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15444552 original size:901 final size:903
Alignment explanation
Indices: 15442434--15447054 Score: 6167
Period size: 901 Copynumber: 5.1 Consensus size: 903
15442424 GTTGGCTTAG
* ** *
15442434 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15442499 CTCGGGCATTTGCTGGTGCCGTATTTTTCTTC-TCCGGGGTACCATC-GCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCATCGGAGCATCGTCGGAG
* * * * *
15442562 AACCTAACTGACGGCATTGGGGTTTCGACGATCGGGGGGTTCGGGGGTGGTGTGCGCAGATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGG-GGTGTGCGCACATGATG
* * * * *
15442627 TGCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCCCTCTTCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTC
* *
15442692 ACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCAATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAA
* * *
15442757 ATGGGGACACATTTTTCAACTGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTGTTT
324 ATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTT
* *
15442822 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAA
* * * *
15442887 AAATTTTAAAAAAT-TTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTC
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15442951 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15443016 CATT-GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
584 CATTGGCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *** * *
15443080 CACATCCCGTCTCTCTATTCGGC---GTG--C--CCGCCCGCCCGCCCACTTGTTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGCCTGCCCACTCGTTTCATCGGTTG
* * * ** * *
15443138 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTGCAGTAGCAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGAGTTGCGGTAGCAGGA
* * * * * **
15443203 TCGGCAGCATGTACAGGGGGACCAGGCCGATCCCCGGC-TTGCGCTTCCCGCCCCTCTGGCCGAC
779 TCGGCAGCA-CTAGAGGGGGACCCGGCTGATCCCCGGCATT-CGCATCCCGCCCCTCTGGCCGGT
* * * *
15443267 TGAGCGCCTGTACGCTCGTTCCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
15443329 GCATATGGAGTTCATTCTCAGTCTAAGATCAGA-CAGGATCGAGGGTTACGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTACGGCAGCACATGCTGG
* * * *
15443393 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCTGGG---CAGCAT-----CA-C--CGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
* * ** * * **
15443447 AACTTGACCGACGGTATTGCAGATCCGGCGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
15443512 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
*
15443577 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
** * *
15443642 TACGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTT
* *** * *
15443707 GTGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTCAAGGACAAAAATCTTTCCTAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAA
* * *
15443772 AATTTTAAAAAATCCCAAACCGCAAGAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
15443837 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTTTGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15443902 ATTGGCACACAGAAATATGAAAAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15443967 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGTCGGCCCACTCGTTTCATCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGCCTGCCCACTCGTTTCATCGGTTGG
* * * * *
15444032 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGAGTTGTGGCAGCAAGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGAGTTGCGGTAGCAGGAT
* * * * * * *
15444097 CGGCAGCACCAGAGGGGGACCTGGCTGATCCCCGGCATTCACATCACGTCCCTTTTGCCGGTTGA
780 CGGCAGCACTAGAGGGGGACCCGGCTGATCCCCGGCATTCGCATCCCGCCCCTCTGGCCGGTTGA
* * *
15444162 GCGCCCGTACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAA
845 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15444221 GCATACAGAGTTCATTCCCAATCTAAGATTAGACCAGACCGAGGGTTACGGCAGCACAT-TTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
15444285 CTCGGGCATGTGCTGGTACCGCTTTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * * *
15444350 ACCTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGGTTGGGGGGGTGTGCGCAGATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
15444415 CGATGGGTGCTGGTACTAGG-CCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15444479 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCTGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAAT
* * *
15444544 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
326 GGGGACACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
15444609 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAA
* * ** ** *
15444674 ATTTTAAAAAATCCCAAATTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTT
456 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15444739 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15444804 TTGGCACACTGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
586 TTGGCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * *
15444869 CATCCTGTCTCTCTGGCCAACGTAATGCCCGATCGCCCGCCTACCCGCCTGCTCGCTCGTTTCAT
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---G-CCG----CCCGCCTGCCCACTCGTTTCAT
* * * *
15444934 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGAGTTGCGGCA
708 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGAGTTGCGGTA
* * * * * * ** * *
15444999 GCAAGATTGGCAGCACCAGAGGGGGACCCGGTTGATCCCCGGCACTCGTATCGTGCCCCTTTTGC
773 GCAGGATCGGCAGCACTAGAGGGGGACCCGGCTGATCCCCGGCATTCGCATCCCGCCCCTCTGGC
* * ** * *
15445064 CGGTTGAGTGCTCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTA
838 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
15445129 A
903 A
* * * *
15445130 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACTGTAGCACATG-TGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15445194 CTCGGGCATGTGCTGGTACTGCTTTTTTCTTCATCGGGGCACAATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * * *
15445259 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGAGGGGGTCAAGGCGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGGTGTGCGCACATGATGT
* *
15445324 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15445389 CACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
15445454 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15445519 GTGCAAGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCGAAAATCCTTT-CGAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTTCCGAAA
* * *
15445583 AAAGTTGAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15445648 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15445713 CATTGGCACACAGAAATATGAAGAGGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTG
584 CATTGGCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15445778 CGCATCCCGTTTCTCTGGCCGGCGTAGTGCTCTCCCGGCCG-CCGCCTGCCTACTCATTTCATTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGGCCGCCCGCCTGCCCACTCGTTTCATCG
* * * * * * *
15445842 GTTGGCTTAGGCATACGGAGTTTATTCCCAGTATAAGATTGAACCAGACCGAGGGTTGTGGTAGT
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGAGTTGCGGTAGC
** * * ** * * * *
15445907 AGGATCGATAGCACGTTGAGGGGGACTCGATTGATCCCCGGCATGCACATCGCGCCCCTCTGGCT
775 AGGATCGGCAGCAC-TAGAGGGGGACCCGGCTGATCCCCGGCATTCGCATCCCGCCCCTCTGGCC
* * * *
15445972 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
839 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15446037 GCATACAGAGTTCATTACCAATCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCACATG-TGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
15446101 CTCTGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * *
15446166 ACCTGATCGACGGCATTAGGGTT-CTAGCGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
* *
15446230 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCC-CCTATCCCTCATCAATCCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15446294 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
15446359 TGGGGACAC-TTTTTCAAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTT
325 TGGGGACACATTTTTC-AAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTT
* *
15446423 TGTGCATGCCAACAAAAATAC-AGCGATCACATCCACCAAGTTTGGGGCCAAAAATCCTTT-CGA
389 TGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTTCCGA
*
15446486 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
452 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
15446551 TCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATAAATTTACAAGCAATGAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15446616 GGCATTGCCACGCAGAAATAT-AAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCT
582 GGCATTGGCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
15446680 TGCGCATCCCATCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCCCGTCCACTCGTTTCATCAGT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGCCTGCCCACTCGTTTCATCGGT
* ** * * * * *
15446745 TGGTTTAGGCATACAAAGTTCATTCCCAGACTAAGATCGGACCACACCGAAG-GTTACGGTAGTA
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC-AAGAGTTGCGGTAGCA
* * * * * *
15446809 GGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCTC-AC-TTGGGCATCCCGCCCCTCTGGCC
776 GGATCGGCAGCAC-TAGAGGGGGACCCGGCTGATCCCCGGCATT-CGCATCCCGCCCCTCTGGCC
* * *
15446872 GGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15446937 GCATACGGAGTTCATTGCCAGTCTAAGATCAGATCAGACC-ACGGGTTATGATC-GCACATGCTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTACG-GCAGCACATGCTG
* *
15447000 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCATCGGAG
15447055 AACCTGACCG
Statistics
Matches: 3298, Mismatches: 376, Indels: 98
0.87 0.10 0.03
Matches are distributed among these distances:
884 271 0.08
885 149 0.05
886 74 0.02
887 1 0.00
888 2 0.00
889 3 0.00
891 38 0.01
892 148 0.04
893 94 0.03
894 6 0.00
895 92 0.03
899 4 0.00
900 132 0.04
901 581 0.18
902 80 0.02
904 75 0.02
905 342 0.10
906 140 0.04
907 240 0.07
909 350 0.11
910 41 0.01
911 427 0.13
912 4 0.00
915 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTAGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAAT
GGGGACACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGCCTGCCCACTCGTTTCATCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGAGTTGCGGTAGCAGGATC
GGCAGCACTAGAGGGGGACCCGGCTGATCCCCGGCATTCGCATCCCGCCCCTCTGGCCGGTTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15445140 original size:26 final size:26
Alignment explanation
Indices: 15445104--15445156 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15445094 GTTGACTTAG
*
15445104 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15445130 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15445156 G
1 G
15445157 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15446061 original size:26 final size:26
Alignment explanation
Indices: 15446011--15446063 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15446001 GTTGACTTAG
* * **
15446011 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTACCAATCTAA
15446037 GCATACAGAGTTCATTACCAATCTAA
1 GCATACAGAGTTCATTACCAATCTAA
15446063 G
1 G
15446064 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAATCTAA
Done.