Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 85 of 131
Found at i:15446948 original size:26 final size:26
Alignment explanation
Indices: 15446911--15446963 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15446901 GTTGACTTAG
15446911 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15446937 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15446963 G
1 G
15446964 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15447291 original size:245 final size:245
Alignment explanation
Indices: 15446861--15447323 Score: 648
Period size: 245 Copynumber: 1.9 Consensus size: 245
15446851 GGGCATCCCG
** *
15446861 CCCCTCTGGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
1 CCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGCTCAT
* * * * * *
15446926 TCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCAGATCAGACCACGGGTTATGATCG
66 TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACAGACCAAGGGTTACGAGCG
* *
15446991 CACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCG-TCGGAG
131 CACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCT-GGAG
*
15447055 AACCTGACCGGCGGCATTGGGGTTTCGCCGGATCATCGCTAGAGCATCGCA
195 AACCTGACCGACGGCATTGGGGTTTCGCCGGATCATCGCTAGAGCATCGCA
* *
15447106 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGCTCA
1 CCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGCTCA
* * * *
15447170 TTCCTAGTCTCAA-CATATAGAGTTCATTCCCAGTCTAAGATCA-AACCGTACCAAGGGTTGCG-
65 TTCCCAGTCT-AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACAG-ACCAAGGGTTACGA
* * * *
15447232 GCAGCACATGTTGGGCTCGGGCATGTGCTGGTTCCGCATTTTTCTTCACCGGGGCACCATCGCTG
128 GC-GCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTG
15447297 GAGAACCTGACCGACGGCATTGGGGTT
192 GAGAACCTGACCGACGGCATTGGGGTT
15447324 CCGGCGATCG
Statistics
Matches: 191, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
244 5 0.03
245 183 0.96
246 3 0.02
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.25
Consensus pattern (245 bp):
CCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGCTCAT
TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACAGACCAAGGGTTACGAGCG
CACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGA
ACCTGACCGACGGCATTGGGGTTTCGCCGGATCATCGCTAGAGCATCGCA
Found at i:15448975 original size:26 final size:26
Alignment explanation
Indices: 15448945--15448997 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15448935 GTTGACTTAG
15448945 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
*
15448971 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
15448997 G
1 G
15448998 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:15451127 original size:887 final size:887
Alignment explanation
Indices: 15447106--15451500 Score: 5550
Period size: 902 Copynumber: 4.9 Consensus size: 887
15447096 GAGCATCGCA
* * *
15447106 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGCTCAT
1 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
15447171 TCCTAGTCTCAA-CATATAGAGTTCATTCCCAGTCTAAGATCAAACC-GTACCAAGGGTTGCGGC
66 TCCCAGTCT-AAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGC
* * *
15447234 AGCACATGTTGGGCTCGGGCATGTGCTGGTTCCGCATTTTTCTTCACCGGGGCACCATCGCTGGA
129 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGA
* *
15447299 GAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGT
194 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
15447363 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCA
259 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
15447428 CACCCCCTTAAAAAGCATTTGAGATTTTACATGTCTGTTGCTAGTAGCCATTAAAGTGTCTGAAA
323 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
15447493 TGGGGAAACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCTAGTTTTTAACTGAATTTTTTT
388 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTT
* * *
15447558 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
453 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
15447623 AATTTTAATAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAATAATAGAAAACGGGTCGTCT
518 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15447688 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
583 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
15447753 ATTGGCACACAGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGC
648 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15447818 GCATCCCGTCTCTCTGGCTGACGTAGTGCCCACCCACCCGCCCCCCCTCTCGTTTCGTCAGTTGG
713 GCATCCCGTCTCTCTGGCCGACGTAGTG--CA--CACCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * **
15447883 CTTAGGCGTACGGAGTTCATTCCGAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGAT
774 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGAT
* ** * * *
15447948 TGACAGCATTCAAAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCTG
839 CGACAGCACGCAAAGGGGGACCAGACCGATCCCCAGCTTGCGCATCCCG
** * * * * * * *
15447997 TGCCACTGG-CAGCTGAGTGCCCGCGCTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTAAT
1 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
15448061 TCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTCAGATCAGACCAGACTGAGGGTTGCGGTAC
66 TCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* ** ** *
15448126 CACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGAGGCACCATCGTCGGAGC
131 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC---GC
* * *
15448191 ATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCGC
190 --CG---GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
*
15448256 ACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
250 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTC
* *
15448321 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTCCAAGTTTGCTGCCAGTAGTCATTAAAG
314 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAG
* *
15448386 TGTCTGAAATGGGGGCACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAATTTTTAGCTG
379 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTG
* *
15448451 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCC
444 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** *
15448516 TTCCGAAAAAATTTTAAAAAATCCAAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
509 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
15448581 GAGTCGTCTTGCCATGAAACTTCATGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
574 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * *
15448646 AAAAATGACTTTGGCATGCAGAAATATGAAGATGTGTCTAAACCGACCTACCACCCTATTGATCC
639 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * * * *
15448711 ACGGCTTGCGCATTCTGTCTCTCTGG-CTAGCGTAGTGCCCACCTGCCTGTCCACTCGTTTCATC
704 ACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCACACCCGCCCGCCCGCTCGTTTCGTC
* * * * *
15448775 GGTTGGCTTAGGTATACGGAGTTCATTCCCAATCTATGATCAGAGCAGA-CTGAGGGTTGTGGCA
768 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCA
* * * * ** *
15448839 GCTGGATCGACAACACGCAAATGGGGACCCGACCGATCCCTGGCTTGCGCATCCCA
832 GCAGGATCGACAGCACGCAAAGGGGGACCAGACCGATCCCCAGCTTGCGCATCCCG
* ** * * *
15448895 CCCCTCTGGCCGGCTGAGTGCCCATATGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCAT
1 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
15448960 TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTGCGACAG
66 TCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * * * * * *
15449025 CACTTGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTATCAGGGCACCATCGTCGGAAA
131 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGA
* * * * * *
15449090 AACTGACTGGCGACATTGGGGTTAC-AGCGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTG
196 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
15449154 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCAC
260 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15449219 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCAGAAAT
324 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15449284 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTAGCTGAATTTTTTG
389 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-ATTTTTAGCTGAATTTTTTT
* * *
15449349 GTGCATGCCAACACAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCCAAAAA
453 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
15449414 AATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
518 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * ** *
15449479 TGCCATGAAACTTTACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAAACATAAAAATGGT
583 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15449544 ATTGGCATGGAAAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTAGC
648 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * * * * *
15449609 GCATCCCGCCTCTC-GATCGGCGTAGTGCCCGCTCGACCGCGCGCCCGCTCATTTCGTCGATTGG
713 GCATCCCGTCTCTCTGGCCGACGTAGTG--CACAC--CCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * **
15449673 CTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGTGTTGTAGCAGCAGGAT
774 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGAT
* ** *
15449738 CGACAGCACG-AAGAGGGGGACCAGGCCGATCCCTGGCTTGCTCATCCCG
839 CGACAGCACGCAA-AGGGGGACCAGACCGATCCCCAGCTTGCGCATCCCG
* * *
15449787 CCCTTCTGGCTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * ** * * * * *
15449852 TCCCAGTCTAAGCATTTGGAGTTCATTATCAGTATAAGATCAAACCAGACTGAGGGTTACGACAG
66 TCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * *
15449917 CAAATGCTAGGCTC-GGCTATATGTGCTGGTGCCGCATTTTTCTTCGTCACGGCACCATTGCCGA
131 CACATGCTGGGCTCGGGC---ATGTGCTGGTGCCGCATTTTTCTTC-AC-CGG-------G--GC
* * * * * *
15449981 AGCATCGCCGGAGATCCTGACCGGCGGTAATAGGGTTCCG-CGATCGGGGGGGCCGGAGGGGTGT
182 ACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGT
* *
15450045 GCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAA
246 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAA
* * * *
15450110 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGAAGCCATT
310 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATT
* *
15450175 AAAGTATCTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATCATT-TACACTTCGAATTTTT
375 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGAATTTTT
* *
15450239 AGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGG-CAAA
439 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * * *
15450303 AATCCTTCCAAAAAAATTGTAAAAAAGT-CTGAACCGTAAAAAGTCTCAAAAATCATAAAAAATA
504 ACTCCTTCCGAAAAAATTTTAAAAAA-TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
15450367 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
568 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
15450432 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATCTGCTTAAACCCACCTACCACCCTAT
633 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
15450497 CGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTG-ACAGCCCGCCCGCCCGCTCTT
698 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCACA-CCCGCCCGCCCGCTCGT
* * * *
15450561 TTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTG
762 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG
* * * * * * * *
15450626 CGGTAGTAGGATCGGCAGCACGCAGAGGTGGATCAAACCGATCCCCAGCTTGCACATCCCG
827 CGGCAGCAGGATCGACAGCACGCAAAGGGGGACCAGACCGATCCCCAGCTTGCGCATCCCG
* * * * *
15450687 CCCCTCTGGCCGGCTGAGAGCCCACAGGCTCGTTCCGCGGGTTGACTTAGGCATAC-GAGTTCAT
1 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * ** * *
15450751 TCCCAGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCCGACTGGACCGAGGGTTGTGGTAG
66 TCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * *
15450816 CATATACTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCCGGAGA
131 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGA
* * * **
15450881 ACCCGACCGACGGTATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTGCGCGTATGATGTG
196 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * * *
15450946 TGATGGGTGCTTGTACTTAGACCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
260 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCAC
15451011 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
324 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15451076 GGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTTTG
389 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
* * *
15451140 TGCATGCCAACAAAAATACATGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
454 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** *
15451205 ATTTTAAGAAATCCCGAACCACAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGGGTCGTCTT
519 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * *
15451270 GCCATGAAACTTCACGTGAACGCTTACGAGACCATTGTATGAATTTGCAAGCCATAAAAAAGGCA
584 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15451335 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGACTTGCG
649 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
15451400 CAT--C--CTGTCT---C--C-----G----CCCGCCCGCCCGCTCGTTTCGTAGGTTGGCTTAG
714 CATCCCGTCTCTCTGGCCGACGTAGTGCACACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* **
15451447 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGCGGCAG
779 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAG
15451501 TACATGTTGG
Statistics
Matches: 3036, Mismatches: 412, Indels: 134
0.85 0.12 0.04
Matches are distributed among these distances:
868 1 0.00
869 78 0.03
873 1 0.00
878 1 0.00
880 1 0.00
883 5 0.00
885 1 0.00
886 89 0.03
887 389 0.13
888 230 0.08
889 264 0.09
890 147 0.05
891 14 0.00
892 239 0.08
893 4 0.00
894 23 0.01
895 3 0.00
896 7 0.00
897 25 0.01
898 123 0.04
899 214 0.07
900 171 0.06
901 36 0.01
902 466 0.15
903 203 0.07
904 89 0.03
905 210 0.07
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (887 bp):
CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCACACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAAAGGGGGACCAGACCGATCCCCAGCTTGCGCATCCCG
Found at i:15452369 original size:26 final size:24
Alignment explanation
Indices: 15452334--15452381 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 24
15452324 TTTTGGCATT
15452334 TACGAAGTTCGATTCCCAGTCTAAGCA
1 TACGAAGTTC-ATT-CCAGT-TAAGCA
15452361 TACG-AGTTCATTCCAGTTAAG
1 TACGAAGTTCATTCCAGTTAAG
15452382 TTGCACGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 5 0.24
25 3 0.14
26 5 0.24
27 4 0.19
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (24 bp):
TACGAAGTTCATTCCAGTTAAGCA
Found at i:15454166 original size:26 final size:26
Alignment explanation
Indices: 15454129--15454181 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15454119 GTTGGCTTAG
15454129 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15454155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15454181 G
1 G
15454182 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15455484 original size:694 final size:694
Alignment explanation
Indices: 15454155--15455512 Score: 2200
Period size: 694 Copynumber: 2.0 Consensus size: 694
15454145 CCCAGTCTAA
* *
15454155 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTATGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGACCAAGGGTTATGACAGCACATGCTGGG
15454220 CTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
** * * * *
15454285 ACCTGACCGGCGGTATTGGTGTTTCAGTGATCGAGGGGGCCAAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCAACGGCATTGGTATTTCAGCGATCGAGGGGGCCAAGGGGGTGTGCGCACAAGATGTG
* *
15454350 CGATGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 CGATGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGACAACTCACA
* *
15454415 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAACTG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
* * * * *
15454480 GGGACGCTTTTTTCCAATGGTCACAAGATTTTATACACTTCGAATTTTTAGCTGATTTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAATTTTTAGCTGAATTTTTTTGT
* * ** ** * *
15454545 GCATGCCAATAAAAATACAGGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTCCAAAAAAA
391 GCATGCCAAGAAAAATACAAGGATCACGTCTAAAAAGTTTGGGACCAAAAATCATTCCAAAAAAA
*
15454610 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15454675 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
* * *
15454740 TGGCATGCAGAAAGATGAAGATGTGCCTAAACCCACGTACCACGCTATCGATACACGGCTTGCGT
586 TGGCATGCAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGC
15454805 ATCCCGTCTCTCTGCCCACCTGCTCGTTTCGTCGGTTGGCATAG
651 ATCCCGTCTCTCTGCCCACCTGCTCGTTTCGTCGGTTGGCATAG
* * * *
15454849 GCATACGGAGTTCATTCCCAATCTAAGATCATATCGGATCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGACCAAGGGTTATGACAGCACATGCTGGG
* * * *
15454914 CTCTGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* *
15454978 AACCTGACCAACGGCATTGGTATTTCTA-CGATCGATGGGG-CTAGGGGGTGTGCGCACAAGATG
130 AACCTGACCAACGGCATTGGTATTTC-AGCGATCGAGGGGGCCAAGGGGGTGTGCGCACAAGATG
15455041 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGACAACTC
194 TGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGACAACTC
*
15455106 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAA
* *
15455171 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAATTTTTAGCTGAATTTTTT
**
15455236 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTAAAAAGTTTGGGACCAAAAATCATTCCGCAA
388 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTAAAAAGTTTGGGACCAAAAATCATTCCAAAA
* *
15455301 AAATTTTAAAAAATTCCGAAGCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
15455366 TTTCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
* *
15455431 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTG
15455496 CGCATCCCGTCTCTCTG
648 CGCATCCCGTCTCTCTG
15455513 GCCGGCGTAG
Statistics
Matches: 609, Mismatches: 52, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
693 28 0.05
694 580 0.95
695 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (694 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGACCAAGGGTTATGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
ACCTGACCAACGGCATTGGTATTTCAGCGATCGAGGGGGCCAAGGGGGTGTGCGCACAAGATGTG
CGATGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGACAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAATTTTTAGCTGAATTTTTTTGT
GCATGCCAAGAAAAATACAAGGATCACGTCTAAAAAGTTTGGGACCAAAAATCATTCCAAAAAAA
TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
TGGCATGCAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGC
ATCCCGTCTCTCTGCCCACCTGCTCGTTTCGTCGGTTGGCATAG
Found at i:15455754 original size:26 final size:26
Alignment explanation
Indices: 15455714--15455770 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
15455704 GTTGACTTAG
* * *
15455714 GCATACGGAGTTCATTCC-TAGTTTAA
1 GCATACGAAGCTCATTCCAT-GTCTAA
15455740 GCATACGAAGCTCATTCCATGTCTAA
1 GCATACGAAGCTCATTCCATGTCTAA
15455766 GCATA
1 GCATA
15455771 TGGAGTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCATGTCTAA
Found at i:15456038 original size:27 final size:26
Alignment explanation
Indices: 15455988--15456040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15455978 CTTATATTGG
15455988 CCCGAACTATAAAAAGTTTCAAAAAT
1 CCCGAACTATAAAAAGTTTCAAAAAT
*
15456014 CCCGAACTGTAAAAAGTTTCAAAAAT
1 CCCGAACTATAAAAAGTTTCAAAAAT
15456040 C
1 C
15456041 ATGAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.47, C:0.21, G:0.09, T:0.23
Consensus pattern (26 bp):
CCCGAACTATAAAAAGTTTCAAAAAT
Found at i:15456247 original size:19 final size:19
Alignment explanation
Indices: 15456223--15456266 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
15456213 CTGGCGTAGT
15456223 GCCCGCCCGACCACCCGCC
1 GCCCGCCCGACCACCCGCC
15456242 GCCCGCCCGACCACCCGCC
1 GCCCGCCCGACCACCCGCC
15456261 GCCCGC
1 GCCCGC
15456267 TCGCTCGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.68, G:0.23, T:0.00
Consensus pattern (19 bp):
GCCCGCCCGACCACCCGCC
Found at i:15456321 original size:26 final size:26
Alignment explanation
Indices: 15456292--15456344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15456282 GTTGGCTTAG
* *
15456292 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15456318 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15456344 G
1 G
15456345 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15457601 original size:695 final size:665
Alignment explanation
Indices: 15456315--15457646 Score: 1770
Period size: 695 Copynumber: 2.0 Consensus size: 665
15456305 ATTCCCAGTC
*
15456315 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCT
1 TAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCT
* * *
15456380 GGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGCCGGGGCACCATCGTCAGAGCATCATGGA
66 GGGCTCGAGCATATGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCGCCAGAGCATCATGGA
**
15456445 GAACCTGACCGACGGCATTGGAGTTTCGGCAATCAAGGGGGCCAGGGGGTGTGCGTACATGATGT
131 GAACCTGACCGACGGCATTGGAGTTTCGGCAATCAAGGGGGCCAGGGGGTGTGCACACATGATGT
* * *
15456510 GCGATGGCGTTGGTACTTTCCTATATTGCCAATCCCTCATCAAACCTCGAGAACTACAGCCTTAA
196 GCGATGGCGTTGGTACTTCCCTATATTGCCAATCCCTCATCAAACCTCGAGAACTACACCCCTAA
**
15456575 AAGAGCATTGAGATTTACTTTGCTACCAGTACCATTAAAGTGTCTAACTGGGACGCTTTATTCAA
261 AAGAGCATTGAGATTTACTTTGCTACCAGTACCATTAAAGTGTCTAACTGGGACAATTTATTCAA
* ** * *
15456640 ATGGTCACAAGATTTTTACACTTCGAGTTTTTAGCTGATTTTTTGTGCTTCCAATAAATACAGGA
326 ATGGTCACAAAATTCGTACACTTCGAGTTTTTAGCTGATTTTTTGTGCTGCCAAAAAATACAGGA
*
15456705 TCACGTACCAAGTTTGGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTCAACCGCAAAA
391 TCACGTACCAAGTTTGGGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTCAACCGCAAAA
* *
15456770 AGTTTCAAAAATCATGAAAATAGAAAACGAGTCGTCTCGCCATGAAACATCACGTGAAGGCTTAA
456 AGTTTCAAAAATCATAAAAATAGAAAACGAGTCATCTCGCCATGAAACATCACGTGAAGGCTTAA
** *
15456835 GGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAAGATGAAGATGTGG
521 GGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAGAAAGATGAAGATGTGC
* * *
15456900 CTAAACCAACGTACCACGCTATCGATACACGGCTTGCGCATCCCGTCTCTCTTCCCACCTGCTCG
586 CTAAACCAACCTACCACCCTATCGATACACGCCTTGCGCATCCCGTCTCTCTTCCCACCTGCTCG
15456965 TTTCGTCGGTTGGCG
651 TTTCGTCGGTTGGCG
* * * * * *
15456980 TAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGATCGAGGGTTGTGGCAGCACATGCT
1 TAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCT
* * * ** * *
15457045 GGGCTCGGGCATATGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCGTCGG
66 GGGCTCGAGCATATGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCGCCAGAGCATCAT-GG
* * * *
15457110 AGAACCTGACCGACGGCATTGGTGTTTCGGCGATCGAGGGGGCCGGGGGGGTGTGCACACATGAT
130 AGAACCTGACCGACGGCATTGGAGTTTCGGCAATCAAGGGGGCC-AGGGGGTGTGCACACATGAT
* * *
15457175 GTGCGATGG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAAC
194 GTGCGATGGCGT--TGGTACTT--CCC-TATATT-G---CCAATCCCTCATCAAACCTCGAGAAC
* * *
15457239 TCACACCCCCTAAAAGAGCGTTTGAGATTTTATGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
250 T-ACA-CCCCTAAAAGAGC-ATTGAGA-TTTA---CTTTGCTACCAGTA-CCATTAAAGTGTCT-
* *
15457304 AAATTGGGACAATTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTT
306 -AACTGGGACAATTTATTCAAATGGTCACAAAAT-TCGTACACTTCGAGTTTTTAGCTG-ATTTT
15457369 TTGGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCTAAAACTCCTTCCA
368 TT-GTGC-TGCC--AAAAAATAC-AGGATCACG--TACCAAGTTTGGGGGC-AAAACTCCTTCCA
* * * * *
15457433 AAAAAATTTTAAAAAAT-CTCGAACCGTAAAAATTTTTAAAAATCGTAAAAAATAGAAAATGAGT
425 AAAAAATTTTAAAAAATCCTC-AACCGCAAAAAGTTTCAAAAATCAT-AAAAATAGAAAACGAGT
* * *
15457497 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
488 CATCTCGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAA
* * * * * *
15457562 ATGGCATTGTCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGC
553 ATGGCATTGGCACACAGAAAGATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATACACGC
15457627 CTTGCGCATCCCGTCTCTCT
618 CTTGCGCATCCCGTCTCTCT
15457647 GGTCGGCGTA
Statistics
Matches: 570, Mismatches: 64, Indels: 36
0.85 0.10 0.05
Matches are distributed among these distances:
665 110 0.19
666 45 0.08
667 26 0.05
668 8 0.01
670 2 0.00
671 6 0.01
672 1 0.00
675 24 0.04
676 3 0.01
677 11 0.02
678 6 0.01
679 4 0.01
682 12 0.02
683 14 0.02
685 28 0.05
686 22 0.04
687 7 0.01
688 4 0.01
689 3 0.01
691 8 0.01
692 9 0.02
693 8 0.01
694 60 0.11
695 149 0.26
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (665 bp):
TAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCT
GGGCTCGAGCATATGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCGCCAGAGCATCATGGA
GAACCTGACCGACGGCATTGGAGTTTCGGCAATCAAGGGGGCCAGGGGGTGTGCACACATGATGT
GCGATGGCGTTGGTACTTCCCTATATTGCCAATCCCTCATCAAACCTCGAGAACTACACCCCTAA
AAGAGCATTGAGATTTACTTTGCTACCAGTACCATTAAAGTGTCTAACTGGGACAATTTATTCAA
ATGGTCACAAAATTCGTACACTTCGAGTTTTTAGCTGATTTTTTGTGCTGCCAAAAAATACAGGA
TCACGTACCAAGTTTGGGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTCAACCGCAAAA
AGTTTCAAAAATCATAAAAATAGAAAACGAGTCATCTCGCCATGAAACATCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAGAAAGATGAAGATGTGC
CTAAACCAACCTACCACCCTATCGATACACGCCTTGCGCATCCCGTCTCTCTTCCCACCTGCTCG
TTTCGTCGGTTGGCG
Found at i:15459242 original size:706 final size:708
Alignment explanation
Indices: 15458046--15459336 Score: 2020
Period size: 706 Copynumber: 1.8 Consensus size: 708
15458036 GGGGCCAGGA
** *
15458046 GGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCT
1 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
15458111 CAGCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CAGCAAACCTTGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* ** *
15458176 AGCTATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAA
131 AGCAATTAAAGCGTCTGAAAT-GGGACACTTTTTTCAAACAGTCACAAAATCTTGTACACTTCAA
* * * * *
15458241 GTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTCCCAAGTTTGGG
195 GTTTTTAGCTGAATGTTTTTGTACAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
15458306 TCCAAAACTCCTTCTAAAAAAATTTTTAAAACAATCCTGAACCGTAAAAAGTTTCAAAAATCATG
260 TCCAAAACTCCTTCCAAAAAAA-TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* * *
15458371 AAAAATAGAAAATGAGTCGTCTTCCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGA
324 AAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
15458436 ATTTACAAGCCATAAAAATGGGATTGGCATGTAGAAATATGAGGATGTGCCTAAATCCACCTACC
389 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCGACC
*
15458501 ACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTG-CCCGCCCGCCCGCC
454 ACCCTATCGATCCACGACTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCGCC
* *
15458565 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAACCTAAGATCGGACCGGATTG
519 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAACCTAAGATCAGACCGGATTG
15458630 ACGGTTACGACAGCACTTGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCA
584 ACGGTTACGACAGCACTTGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCA
15458695 CCATCACCGAAGCATCGACAGAGAACCTGATCGGCAGCATTGGGGTTCCGACGATCCGGG
649 CCATCACCGAAGCATCGACAGAGAACCTGATCGGCAGCATTGGGGTTCCGACGATCCGGG
* *
15458755 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTCTCCCT
1 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
15458820 CATCAAACCTCT-AGAACTCACACCCGCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CAGCAAACCT-TGAGAACTCACACCCGCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
15458884 GTAGCAATTAAAGTGTCTGAAAT-GGACACTTTTTTCAAACAGTCACAAAATCTTGTACACTTCT
129 GTAGCAATTAAAGCGTCTGAAATGGGACACTTTTTTCAAACAGTCACAAAATCTTGTACACTTCA
*
15458948 AGTTTTTAGCTGAATGTTTTTGTACAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
194 AGTTTTTAGCTGAATGTTTTTGTACAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
15459013 CG-CCAAAACTCCTTCCGAAAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGCTTT-GAAAATCG
259 -GTCCAAAACTCCTTCCAAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCA
* *
15459075 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTAT
322 TGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
15459140 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGTA-GATGTGCCTAAACCCACCG
387 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG-AGGATGTGCCTAAACCCACCG
* * * *
15459204 ACCACCCTATTGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCG
451 ACCACCCTATCGATCCACGACTTGCACATCCCGTCTCTCTGGCCGACGTAGTG--C-CCCGCCCG
* * * ** *
15459269 CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCGTATGAAGTTCATTCCCAGTCTAAGATTAGACC
513 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAACCTAAGATCAGACC
15459334 GGA
578 GGA
15459337 CTGAGAGTTG
Statistics
Matches: 526, Mismatches: 47, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
706 197 0.37
707 4 0.01
708 115 0.22
709 86 0.16
710 124 0.24
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (708 bp):
GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CAGCAAACCTTGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCAATTAAAGCGTCTGAAATGGGACACTTTTTTCAAACAGTCACAAAATCTTGTACACTTCAAG
TTTTTAGCTGAATGTTTTTGTACAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGT
CCAAAACTCCTTCCAAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCGACCAC
CCTATCGATCCACGACTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAACCTAAGATCAGACCGGATTGAC
GGTTACGACAGCACTTGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCACC
ATCACCGAAGCATCGACAGAGAACCTGATCGGCAGCATTGGGGTTCCGACGATCCGGG
Found at i:15460268 original size:26 final size:26
Alignment explanation
Indices: 15460192--15460253 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
15460182 TGGCTTAGGG
15460192 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
15460218 ATACTGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
15460244 ATACGGAGTT
1 ATACGGAGTT
15460254 GGTTTCCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15461157 original size:26 final size:26
Alignment explanation
Indices: 15461121--15461173 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15461111 GTTGACTTAG
15461121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15461147 GCATACGGAGTTCATTGCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15461173 G
1 G
15461174 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15462460 original size:902 final size:895
Alignment explanation
Indices: 15460216--15465680 Score: 6168
Period size: 903 Copynumber: 6.1 Consensus size: 895
15460206 CCCAGTCTAA
* * ** * * *
15460216 GCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTGGTTTCCAATCTAAGATCGGACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC-CGAC
* * * * *
15460281 CGAGGGTTGCGGCTGCACATGTTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
* * *
15460346 AACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCC-AGCGATCGAGGGG
130 ---CA---TC---GCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGG
*
15460410 CCCAGGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
185 GCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
15460475 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
248 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15460540 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
313 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
15460605 ACTCCGAGTTTTCAGCTGAATTTTTTTGTGCATACCCAA-AAAAATACAAGGATCACGTCTACCA
378 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
15460669 AGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCCGAACCGTAAAAAGTTTCGAAA
442 AGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * * * * *
15460734 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACAATT
507 ATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
15460799 GTATGAATTTACAAGCCATAAAAATTGCATTGGCACACAGAAATATGAACATGTGCCTAAACCCA
572 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA
* * * *
15460864 CCTACCACCCTATCGATCGGTAG-CTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCG
637 CCTACCACCCTATCGATC-CTCGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* ** **
15460928 CCCG--C-CCGCTCGCTCGTTTCGTCGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
701 CCCGCCCGCCGCCCGCTCGTTTCGTCTATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* ** ** * * ** * *
15460990 TCAGACCAAACTGAGGGTTGCAACAACAGGATGGGTAGCACGCAGAGGGGGACACGACCGATCCC
766 TCAGACCAGACCAAGGGTTGCGGCAACAAGATCGACAGCACGTAGA-GGGGACCCGACCGATCCC
* * * * * * * * *
15461055 CAGCTTGCGCATCCCACCCCACTTGCCAGCTAAGCGCCCACAGGCTCGTTTCGTGGGTTGACTTA
830 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
15461120 G
895 G
* * *
15461121 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCTGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GAC
* * * * *
15461186 CGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
** * * * * *
15461251 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGTA-TGAGGGTCCCCG-CGATCAGGGG
130 ---CAT---C---GCATCACCAGAGAACCTGACCGACGGCATTG-GGGT-TCCGACGATCGGGGG
15461314 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
184 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
15461379 ATCCCTCATCATACCTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCT
249 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15461444 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
314 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15461509 CTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAG
379 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * **
15461574 TTTGGGGCCAAAACTAATTCTGAAAAAATTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT
444 TTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
15461639 CGTAAAAAGTAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
509 CGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * * *
15461704 ATCAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTATACCAACC
574 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
* * *
15461769 TGCCACCCTATCAATCCTTGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCG
639 TACCACCCTATCGATCCTCGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---CCCG
* * * **
15461834 ACCGCATGCCCGCCGGCCCGCTCGTTTCGTCTACTAGCTTAGGCATATAGAGTTCATTCATAGTC
701 -CC-C--GCCCGCC-GCCCGCTCGTTTCGTCTATTGGCTTAGGCATACAGAGTTCATTCCCAGTC
* * * * *
15461899 TAACATC-GAACCAGACCGAGGGTTACGGCAACACGATCGACAACACGTAGAGGGAGACCCGACC
761 TAAGATCAG-ACCAGACCAAGGGTTGCGGCAACAAGATCGACAGCACGTAGAGGG-GACCCGACC
* * *
15461963 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGACCGCACGCTCATTTTGTGGGTT
824 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
15462028 GACTTAG
889 GACTTAG
* * *
15462035 GCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAATATCGGACCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GAC
* * * * * *
15462100 CGAGGGTTCCGACAGCACATGCTGGGCTCTAGCATGTGCTGGTGCTGCATTTTTTTTCGTTAGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
* * * *
15462165 CA-C-CATCACCAGAGAACCTGACCGGCGGCA-TGGGGTTTCGACGATCGGGGGGGCTGGGAGGT
130 CATCGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
*
15462227 GTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
195 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
15462292 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGTCAGTAGCCA
260 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
** *
15462357 TTAAAGTGTCTGAAATGGGGACACCGTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTT
325 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
15462422 TAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTGCCAAGTTTGGGGCCAA
390 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
15462487 AAC-ACCTTCCAAAAAAATTTTAAAAAATCTCGGACCGCAAAAAGTTTCAAAAATCGTAAAAAAT
455 AACTA-CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAAT
* *
15462551 AGAAAACGAGTCGTCTTGGCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
519 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
15462616 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTA
584 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * ** * * * **
15462681 TCGA-CCTATGGCTTGTGCATCTTGCCTCTCTGGCCGAC--A-TG-GCGCCCGCCCTTCCGCCCG
649 TCGATCCT-CGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCG
* * * * * *
15462741 CCCGCTCGTTTCTTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAACATC-GAA
712 CCCGCTCGTTTCGTCTATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-A
* ** * * *
15462805 CCAAGGGTTGCGGC-AC-----C-A-TGCA-G-AG-GGGGATTCGACTGATCCTCGGCTTACGCA
776 CCAAGGGTTGCGGCAACAAGATCGACAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCA
* * *
15462859 TCCCACCCCTCTAGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
841 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
15462914 GCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CCGAC
* ** * *
15462979 CGAGGGTTGTGGCAGCACATATTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
* * *
15463044 AACCATCGTCGGAGCATCACCGGAGAACCTGGCCGACGGCATTGGGGTTCCGACGATCGAGGGGG
130 ---CA---TC---GCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * **
15463109 CCGGAGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTAATTTTACCCTTATATTGGCCCCCT
186 CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCT
* *
15463174 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
249 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15463239 GCCAGTAGGCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
314 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
15463303 CTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
379 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
15463368 TTTGGGGCAAAAAAT-CTTTCCGAAAAAATTTTAAAAAATCCCAAACC-TCAAAAAGTTTCAAAA
444 TTTGGGGCCAAAACTAC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAA
* * * *
15463431 ATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
507 ATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
**
15463496 GTATGAATTTACAAGCCATAAAAA-GTGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
572 GTATGAATTTACAAGCCATAAAAATG-GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
15463560 ACCTACCACCCTATCGATCCACGGCTTACACATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG
636 ACCTACCACCCTATCGATCCTCGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * ** * * *
15463625 CCTGCCCGCTTGCCTACTCGTTTTGTCTGTTGGCTTAGGCATACAGAGATCATT-CCAGTCTAAG
701 CCCGCCCGC-CGCCCGCTCGTTTCGTCTATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * ** * ***
15463689 ATC-GAACCGGACCAAGGGTGGCGGCAGGAAGATCGGCAGCACGTAGAGGGTGACCCGGTTGATC
765 ATCAG-ACCAGACCAAGGGTTGCGGCAACAAGATCGACAGCACGTAGAGGG-GACCCGACCGATC
* * * *
15463753 CCTGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGGCCGCACGCTCATTTCGTGGGTTGACT
828 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACT
*
15463818 TTG
893 TAG
* * *
15463821 GCATACGGAGTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGT-TGAAGATTGGGCCGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT-AAGATCGGACCG-A
* * * * * * * *
15463885 CCGAGGGTTGTGGTAGCACGTGTTGGGCTTGGGCATGTGCTGGTGCTGCATTTCTCTTCGTTGAG
64 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTG-G
* * * *
15463950 GCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGG
128 G-----GCATC---GCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * *
15464015 GTCGGGTGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCC
185 G-CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** * *
15464080 TATATCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGC
248 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
15464145 TGCCAGTAGCCATTAAAGTGT-T----T---G-----------AAATGGTCCCAAATTCTTGTAC
313 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
15464191 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
378 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
** * * * * * * ** *
15464256 GTTTGATGTCAAAACTCCTTCCAAAAAAACTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAATA
443 GTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * *
15464321 TCGTAAAAAATAGAAAACGAGTCGTCTCGCCATAAAACTTCACGTGAAGGCTTAAGGCACCATTG
508 TCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
15464386 TATGAATTTACATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
573 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * * * *
15464451 CTACCA-TCTATTGATCCACGGCTTACGCATCCCGTCTCTCTGGCTGGCGTAGTGCCTGCCCACC
638 CTACCACCCTATCGATCCTCGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * ** * * ** *
15464515 CG--C-CCGCCCGCTTGTTTCATCGGTTGGCTTAGGGATACGGAGTTCATTCCTGGTCTAAGATT
703 CGCCCGCCGCCCGCTCGTTTCGTCTATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
** * * * **
15464577 AGACTGGACAAAGGGTTACGGCAGCAAGATCGACAGCACGTAGAGGGAGACCCGGTCGATCCCCG
768 AGACCAGACCAAGGGTTGCGGCAACAAGATCGACAGCACGTAGAGGG-GACCCGACCGATCCCCG
* ** ** **
15464642 GCTTGTGCATCCCGCCCCTCTGGTTGGCTGAGCGATCGCACGCTCATTTTATGGGTTGACTTAG
832 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
*
15464706 GCATGCGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GATC-G---GACC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGACC
* * * **
15464746 GAGGGTTACGGCAGCACGTGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACTGGGGC
66 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGC
** * * *
15464811 A-C-CATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGTGGGGT
131 ATCGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGT
* * * ** *
15464874 GCGCGCGCATGATGTGCGATAGGTGCTGGTACTTACCCCTTATATTGGCCCCCTATCCCACATCA
195 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
15464939 AACCTCAAGAACTCACACCCGCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTTCCAGTAG-CA
260 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
15465003 GTTAAAGTGTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
325 -TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
15465068 TTAGCTGAATTTTTTTGT-CTATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGACC
389 TTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * **
15465132 AAAAC-ACCTTCCGAAAAAATTTGAAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTAAAA
453 AAAACTA-CTTCCGAAAAAATTT-TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAA
* * * * *
15465196 AATAGAAAATGAGTCTTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACTATTCTATGAATT
516 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
15465261 TACAAGCAATAAGAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
581 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * * * * *
15465326 CCATCGAT-CTACGACTTGTGCATCCTGCCTCTGTTGCCAGCATACTCACCGCCCGCCCGCCCAC
646 CTATCGATCCT-CGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGC
* * * * *
15465390 CCGCCCGCCCGCTCGTTTCATC-AGTTGGCTTAGGTATACGGAGTTC-TTCTCAGCCTAAGATCA
706 CCG-CCGCCCGCTCGTTTCGTCTA-TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
* ** * * * * *
15465453 GACCAGACCGAA-GGTTGCGGTAGTAGGATCGACAGCACGCAAAAGGGGACCTGATCGATCCCCG
769 GACCAGACC-AAGGGTTGCGGCAACAAGATCGACAGCACG-TAGAGGGGACCCGACCGATCCCCG
** * * *
15465517 GCTTGCGCATCTTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
832 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * *
15465581 GCATACGGAGTTCATTCTCAGTCTAAGCATATGGAATTCATTCTCAGTCTAAGTTCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GAC
* * * *
15465646 CAAAGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
15465681 TGGGGTTCCG
Statistics
Matches: 3902, Mismatches: 515, Indels: 290
0.83 0.11 0.06
Matches are distributed among these distances:
846 2 0.00
847 131 0.03
848 46 0.01
852 2 0.00
853 2 0.00
855 1 0.00
858 2 0.00
859 53 0.01
860 1 0.00
863 1 0.00
864 3 0.00
865 1 0.00
866 106 0.03
867 152 0.04
868 30 0.01
869 1 0.00
870 1 0.00
872 11 0.00
873 1 0.00
874 1 0.00
875 131 0.03
876 47 0.01
877 1 0.00
879 183 0.05
880 6 0.00
881 4 0.00
882 3 0.00
883 3 0.00
884 36 0.01
885 140 0.04
886 3 0.00
887 1 0.00
888 52 0.01
889 257 0.07
890 31 0.01
891 92 0.02
892 338 0.09
893 111 0.03
894 3 0.00
895 35 0.01
896 50 0.01
897 1 0.00
898 2 0.00
899 2 0.00
900 2 0.00
901 39 0.01
902 474 0.12
903 488 0.13
904 6 0.00
905 163 0.04
906 12 0.00
907 329 0.08
908 39 0.01
910 3 0.00
911 2 0.00
912 1 0.00
913 6 0.00
914 258 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGC
ATCGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCTCGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCCCG
CTCGTTTCGTCTATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAG
GGTTGCGGCAACAAGATCGACAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:15462950 original size:26 final size:26
Alignment explanation
Indices: 15462914--15462966 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15462904 GTTGACTTAG
15462914 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15462940 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15462966 G
1 G
15462967 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:15465611 original size:26 final size:26
Alignment explanation
Indices: 15465581--15465633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15465571 GTTGACTTAG
*
15465581 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAATTCATTCTCAGTCTAA
*
15465607 GCATATGGAATTCATTCTCAGTCTAA
1 GCATACGGAATTCATTCTCAGTCTAA
15465633 G
1 G
15465634 TTCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCTCAGTCTAA
Found at i:15467318 original size:26 final size:26
Alignment explanation
Indices: 15467289--15467338 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15467279 GTTGACTTAG
* *
15467289 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
15467315 GCATAAGGAGTTCATTCCCAGTCT
1 GCATAAGGAGTTCATTCCCAGTCT
15467339 GAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:15468214 original size:26 final size:26
Alignment explanation
Indices: 15468185--15468237 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15468175 GTTGACTTAG
* *
15468185 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15468211 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15468237 G
1 G
15468238 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:15468362 original size:896 final size:893
Alignment explanation
Indices: 15466407--15468978 Score: 3644
Period size: 897 Copynumber: 2.9 Consensus size: 893
15466397 GTTGACTTAG
*
15466407 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGC-GACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAG-CAGCACATGCT-G
* * * * * *
15466471 GCTCGGGCTTGTGCTTGTGCTGGTGCCTCATTTTTGTTCGTCGGGGCACCATCGTC-TAGCATCA
64 GCTC--G---G-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
* * *
15466535 CCGGAGAACCTAACC-GACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGTACACA
123 CCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG--CGCA
* *
15466599 CATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
185 CATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
15466664 AGAACTCACACCCCTTAAAAAGCATTTGA-GATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGT
250 AGAACTCACACCCCTTAAAGAGCA-TTCATGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
15466728 GTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGA
314 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-
* * *
15466793 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA-TCTTCCAAGTTTGGGG-CAAATCTCC
378 ATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCA-AGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
15466856 TTCCAAAAAAAGTTT-AAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
442 TTCCAAAAAAATTTTAAAAAAATCTCAAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAA
15466920 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
507 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
15466985 TAAAAATGGGATTGGCACGTAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
572 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
15467050 CACGGCTTGCGCAT-CCAGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTT
637 CACGGCTTGCGCATCCCA-TCTCTCTGGCCGGCATAGTGCCTGCCCGCCCG--C-T----TCGTT
* * * * * *
15467114 TCACCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCGAAGATTGGACCAGACTGAGGGTTGC
694 TCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACCGAGGGTTGC
* * * *
15467179 GGCAGTC-GGATCGATAGCACATAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCC
758 AGCAG-CAGGATCGATAGCACACAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
15467243 TCTGGCCGGCTAAGCGCCCGTACGCTCATTTCGTAGGTTGACTTAGGCATACGGTGTTCATTCCC
822 TCTGGCCGGCTAAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCC
15467308 AGTCTAA
887 AGTCTAA
* * * *
15467315 GCATAAGGAGTTCATTCCCAGTCTGAGATCGGACCGGACCAAGGGTTACAACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCACATGCT-GG
* * * * * *
15467380 CTTGGTCATGTGCTGGTGTCGCATTTTTCATCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * * * *
15467445 ACCTGACCAGAGAAATTGGGGTTTCGACGATCAGCGGGGCCGGGGGGTGTGCGCACATGATGTAC
130 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
15467510 GAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15467575 CCCCTTTAAAGAGCATTCATGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCC-TTAAAGAGCATTCATGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
15467640 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT-TTTTTGT
** * *
15467705 GCAAGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAACAAT
388 GCAAGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
15467770 TTTTAAAAAAAT-TCATAATCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
453 TTTTAAAAAAATCTCA-AACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
15467834 TGCCATTAAACTTCTCGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15467899 ATTGGCTTGCAAAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATTGATCCACAGCTTGC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15467964 GCATCCCATCTCTCTGGTCGGCATAGTGCCTGCCCGCCCGCTT-GTTTCATCGATTGGCTTAAGC
647 GCATCCCATCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCTTCGTTTCATCGGTTGGCTTAAGC
*
15468028 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCAGCAGCAGGATCGATAGC
* * *
15468093 ACGCAGAGGAGGACCTG-GCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACC
776 ACACAGAGGAGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACC
* *
15468157 CGCACGCTCGTTTCGT-GCGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
840 CGCACGCTCATTTCGTAG-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15468211 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCCCATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCACATGCTG-G
* * * *
15468276 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCTGGGTACCATCGCCGGAGCATCGCCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
15468341 ACTTGACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAAGGGGGTGTGCGCACATGATGTG
130 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
15468406 CGAAGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAAATCAC
194 CGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15468471 ACCCCCTTAAGGAGCATTCATGATTTCACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 A-CCCCTTAAAGAGCATTCATGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
15468536 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGATTTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTG
* * *
15468601 TGCAAGCCAACAAAAGTACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAA
387 TGCAAGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
15468666 ATTTAAAAAAAATCTCGAACCGTAAAAGTTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 ATTTTAAAAAAATCTCAAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15468731 TGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15468796 ATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15468861 GCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCAGCCCG-TTCATTTTC-TCGGTTGGCTTACG
647 GCATCCCATCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCTTC-GTTTCATCGGTTGGCTTAAG
**
15468924 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCAGCAGCA
711 CATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCAGCAGCA
15468979 CATGCTGGGC
Statistics
Matches: 1490, Mismatches: 151, Indels: 57
0.88 0.09 0.03
Matches are distributed among these distances:
895 5 0.00
896 322 0.22
897 534 0.36
898 12 0.01
901 87 0.06
902 189 0.13
903 74 0.05
904 203 0.14
905 3 0.00
906 1 0.00
908 60 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCACATGCTGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
AAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCTTAAAGAGCATTCATGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCA
AGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAAATCTCAAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCATCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCTTCGTTTCATCGGTTGGCTTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCAGCAGCAGGATCGATAGCACACA
GAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACG
CTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15469830 original size:26 final size:26
Alignment explanation
Indices: 15469794--15469845 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15469784 GTGGTTTGAC
15469794 TTAGGCATACGGAGTTCATTCCCAGT
1 TTAGGCATACGGAGTTCATTCCCAGT
15469820 TTAGGCATACGGAGTTCATTCCCAGT
1 TTAGGCATACGGAGTTCATTCCCAGT
15469846 CTAAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGGCATACGGAGTTCATTCCCAGT
Found at i:15470883 original size:179 final size:181
Alignment explanation
Indices: 15470584--15470938 Score: 477
Period size: 179 Copynumber: 2.0 Consensus size: 181
15470574 TTGCGATAGG
* ** * * *
15470584 AGGATCGGTAGCACACAGAGGGGGACCCGATTGATCGTCGGCTTGCTCATCCTGCCCCTCTGGCT
1 AGGATCGGTAGCACACAGAGGGGGACCCGATCGATCCCCAGCTTGATCATCCTACCCCTCTGGCT
* ** *
15470649 GCTGAGTGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*
15470714 CATACAGAG-TT-C-AGTCTAAGATCAGACTGGATTGAGGGTTGCTGCAGC
131 CATACAGAGTTTCCAAGTCTAAGATCAGACCGGATTGAGGGTTGCTGCAGC
* * * *
15470762 AGGATCGGTAGCACGCAGAGGGGGACCTGATCGATCCCCAGCTTGATCA-CGTCACCCCTCTAG-
1 AGGATCGGTAGCACACAGAGGGGGACCCGATCGATCCCCAGCTTGATCATCCT-ACCCCTCTGGC
15470825 TCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
65 T-G-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
15470890 AAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGATTGAGGGTT
128 AAGCATACAGAG-T--TTCCAAGTCTAAGATCAGACCGGATTGAGGGTT
15470939 ACGGTAGCAC
Statistics
Matches: 152, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
177 3 0.02
178 51 0.34
179 68 0.45
183 2 0.01
184 1 0.01
185 27 0.18
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (181 bp):
AGGATCGGTAGCACACAGAGGGGGACCCGATCGATCCCCAGCTTGATCATCCTACCCCTCTGGCT
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACAGAGTTTCCAAGTCTAAGATCAGACCGGATTGAGGGTTGCTGCAGC
Found at i:15470902 original size:26 final size:26
Alignment explanation
Indices: 15470866--15470918 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15470856 GTTGACTTAG
*
15470866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15470892 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15470918 G
1 G
15470919 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15471805 original size:26 final size:26
Alignment explanation
Indices: 15471768--15471820 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15471758 GTTGACTTAG
15471768 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15471794 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15471820 G
1 G
15471821 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15472699 original size:26 final size:26
Alignment explanation
Indices: 15472669--15472721 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15472659 GTTGACTTAG
15472669 GCATACGGAGTTCA-TCGCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
15472695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15472721 G
1 G
15472722 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15472827 original size:901 final size:899
Alignment explanation
Indices: 15470725--15472912 Score: 2834
Period size: 901 Copynumber: 2.4 Consensus size: 899
15470715 ATACAGAGTT
* ** * * *
15470725 CAGTCTAAGATCAGACTGGATTGAGGGTTGCTGCAGCAGGATCGGTAGCACGCAGAGGGGGACCT
1 CAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCC
* * * * *
15470790 GATCGATCCCCAGCTTGATCACGTCACCCCTCTAGTCGACTGAGCGCCCGCACGCTCATTTCGTG
66 GATCGATCCCCGGCTTGCTCAC-TCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
15470855 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGA
130 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGA
* ** * * ** *
15470920 TCAGACCGGATTGAGGGTTACGGTAGCACATGCTAGG-TTGGGCATGTGCTGTTGCCGTA-TTTC
195 TCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGCTT-AGCATGTGCTGGTGTAGCATTTTC
* * * ** *
15470983 TCTTCACCGGGGCACCATCATTGG-GCCATCATCCGAGAACCTGACCAATGGCAATGGGGTTCCG
259 -CTTCACCGGGGCACCATCGTCGGAG-CATCATCGGAGAACCTGA-CAGCGGCATTGGGGTTCCG
* * *
15471047 GCGATCGGGCGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
321 ACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
15471112 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
385 ATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTT
* *
15471177 ACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGATATTTTTTTCAAATGGTCACAAA
450 ACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAA
*
15471242 ATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTTTGCATGACAAAAAAAAATACAAGGATCA
515 ATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTTTGCATGACAAAAAAAAATACAAGCATCA
* *
15471307 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
580 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
15471372 TTTTCAAAAATCATGAAAAATAGAAAAATAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
645 GTTTCAAAAATCATGAAAAATAGAAAAAGAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
*
15471437 GGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGC
710 GGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGC
* * *
15471502 ATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCACTCTGGTCGACGTAGTG
775 ATAAACCCACCTACCACCATATCGATCCACAGCTTGCGCATCCCATCACTCTGGCCGACGTAGTG
* * * * *
15471567 CCCACCTGCCCACCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTACAGAGTTCATTTC
840 CCCACCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGATTAGGCATACAGAGTTCATTTC
* * * * * * *
15471627 CAGTCTAAGATTAGACCAGACAGTGGGTTGCGGTAGCAAGATCGGTAGCACACAGAGGGGAACTC
1 CAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCC
* * * * * * * *
15471692 GACCGATCCCCGGCTTGCTCAACCCGCCCTTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTG
66 GATCGATCCCCGGCTTGCTC-ACTCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
15471757 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGA
130 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGA
* ** * * * *
15471822 TCGGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCTTGTGC-CG-GTACCATGTTT
195 TCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGCT-TAGCATGTGCTGGTGTAGCA--TTT
** * * * * *
15471885 TTGTTCGCCAGGTCACCATCGCCGGAGCATCATCGGAGAACCTGACTAGCGGCATTGGGGTTCCA
257 TCCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGAC-AGCGGCATTGGGGTTCCG
* * * *
15471950 ACGATCGGGGGGGCCGGAGG-GTGCACAAATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATA
321 ACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
15472014 TTGGCCTCCTATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTA
386 TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTA
* * *
15472079 CTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTCACAAA
451 CAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAA
* * *
15472144 ATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTATGCATG-CCAACAAAATTACAAGCATC
515 ATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTT-TGCATGACAAAAAAAAATACAAGCATC
* * *
15472207 ACGTCTACGAAGTTTGGGGCTAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAA
579 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * * * * * *
15472272 GGTTTCGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
644 AGTTTCAAAAATCATGAAAAATAGAAAAAGAATCGTCTTGCCATGAAACTTCACATGAAGGCTTA
* *
15472337 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
709 AGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTG
** * *
15472402 CCA-AAACCCACCTACCACCATATCGATCCACAGCTTGCTTATCCCGTCTCTCTGGCCGACGTAG
774 -CATAAACCCACCTACCACCATATCGATCCACAGCTTGCGCATCCCATCACTCTGGCCGACGTAG
* * ** * *
15472466 TGCCCGCCCGTCCGTCCGCCCGTTCGTTTCATCGGTTGGATTAGGCATACGGAGTTCA-TTC
838 TGCCCACCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGATTAGGCATACAGAGTTCATTTC
* * * *
15472527 CTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGGTAGCACATAGAGGGGGACC
1 C-AGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACC
* * * * * * * *
15472592 CGGTCGATCCTCGGCATGCGCATCTTACCCCTCTAGCCGGTTGAGCGCCCACACGCTCGTTTCAT
65 CGATCGATCCCCGGCTTGCTCA-CTCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
15472657 GGGTTGACTTAGGCATACGGAGTTCA-TCGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
129 GGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAA
* ** *
15472721 GATTGGATTGGACCGAGGGTTACGGTAGCACATGCT-GGCCTTACGCATGTGCTGGTGTTGCATT
193 GATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG-CTTA-GCATGTGCTGGTGTAGCATT
* * * * * * *
15472785 TTCCTTCACCGGGGCCCCAGCGTCGGAGCATCGTGGGAGAACCTCACCGACGGCATTGGGGTTTC
256 TTCCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACAG-CGGCATTGGGGTTCC
* * * *
15472850 GACGATCGGGGGGTCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGTTGCTACTTGGCCC
320 GACGATCGGGGGGGC-CGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
15472913 GCATACGGAG
Statistics
Matches: 1089, Mismatches: 175, Indels: 42
0.83 0.13 0.03
Matches are distributed among these distances:
900 11 0.01
901 701 0.64
902 263 0.24
903 76 0.07
904 38 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
CAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCC
GATCGATCCCCGGCTTGCTCACTCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGAT
CGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGCTTAGCATGTGCTGGTGTAGCATTTTCCT
TCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACAGCGGCATTGGGGTTCCGACGAT
CGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAAGTTTTTTTTGCATGACAAAAAAAAATACAAGCATCACGTCTA
CCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAAAGAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
ATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCATAAAC
CCACCTACCACCATATCGATCCACAGCTTGCGCATCCCATCACTCTGGCCGACGTAGTGCCCACC
CGCCCACCCGCCCGCTCGTTTCATCGGTTGGATTAGGCATACAGAGTTCATTTC
Found at i:15472949 original size:26 final size:26
Alignment explanation
Indices: 15472913--15472965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15472903 TACTTGGCCC
* *
15472913 GCATACGGAGTTCCTTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15472939 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15472965 G
1 G
15472966 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15473850 original size:26 final size:26
Alignment explanation
Indices: 15473814--15473866 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15473804 ATTGACTTAG
15473814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15473840 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15473866 G
1 G
15473867 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15475706 original size:857 final size:856
Alignment explanation
Indices: 15473840--15479721 Score: 5431
Period size: 857 Copynumber: 6.8 Consensus size: 856
15473830 CCCAGTCTAA
* ** * ** *
15473840 GCATACGGAGTTGATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCTTATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGGG
* * * ** ** *
15473905 CTCGAGCATGTGCTAGTGCTGCATTTTGATTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGGCACCAT--------CA---TCGGAGA
* *
15473970 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCTGGGGGGGTGTGCGCCCATGATGTG
120 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGC-CGGGGGGTGTGCGCACATGATGTG
15474035 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-GAAACTCA
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCA
* *
15474099 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15474164 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15474229 GTGCATGCCAGCAAAAATAGAAGGACCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
** * *
15474293 ATATTTTAAAAAATCTTGAACCGTAAAAAGTTTCT-AAAATCATGAAAAATAAAAAACGAGTCGT
442 A-ATTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAAATCGTGAAAAATAGAAAACGAGTCGT
15474357 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15474422 GCATTGGCATGCGAAAAAATATGAAGATATGCCTAAA-CCACCTACCACCCTATCGATCCACGGC
570 GCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * *
15474486 TTGCGCATCCTAATTCTCTCTGG-C-GCGTA-TCCACCGCACCTCCCGCTCATGTTGA-C-G-TG
633 TTGCGCATCC--CGTCTCTCTGGCCAGCGTAGTGC-CCGCGCCGCCCGCTCAT-TTCATCGGTTG
* * * * *
15474545 GCTTATAGG--TAC-GA-TTCA----AAGATC---GATTCA-A--GCATTCAAGGGTTACGTAAG
694 GC-T-TAGGCATACGGAGTTCATTCCCAG-TCTAAGA-TCAGACCGAACT-AAGGGTTGCG-CAG
** * * * * * *
15474596 CA-GA-CAACAGCATGTAGAGGGGGACCCGGTCGATCCCC-GC-TGCG-A--CT-CGCCTCTAGT
753 CAGGATCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCT-CT
* * * *
15474653 CGGCTTGAGCGCCCCGCAGCTCTCGTTTTGT-GGTTGACTTCG
817 GGGC-TGAGCG-CCCGCA-CGCTCGTTTCGTGGGTTGACTTAG
* * * *
15474695 GCATACGGACTTCATCATCTAAGAAGGATTCATTCATCAGTTGAGATC-GACCGGACA-ACGGTT
1 GCATACGGAGTTCAT--TC----------CCAGTC-T-A----AGATCGGACCGGACAGAGGGTT
** * * * ** *
15474758 GCAACAGCACATGCTGGGTTCGAGCATGTGCTGGTTCTGCATTTTTCTTCGTCGGGGCACCATCG
48 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGGCACCATCA
* * *
15474823 TCGGAGAACCTGACCGAC-GAATTGGGGTTCCGATGATCAGGGGGGCC-GGGGGTGTGCACACAT
113 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACAT
*
15474886 GATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
177 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
15474951 ACTCACACCCCCTTAAAGACCATTTGAGATTTTCCAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
242 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
15475016 TGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
307 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
15475081 TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTTC
372 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * *
15475146 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAATTAAAAAACAAGT
437 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
* * * *
15475211 TGTCTCGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGCATGAATTTACAAGCCATAAAA
502 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*** * * *
15475276 ATGGCATTGGCACATAGAAATATGAAGATGTGTCGAAACCCACCTACCACCCTATCGATCCATGG
567 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
15475341 -TTTCTGTATCCCGTCTCTCTGGCTAGCGTAGTGCCTGC-CCGCCTGTTCATTTCATCGGTTTGC
632 CTTGC-GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCGCCGCCCGCTCATTTCATCGGTTGGC
* * * * * *
15475404 TTAGGCATACGGAGTTCATTCCTAGTATAAGATCAGACCGAACCAAAGCTTGCTGCAGCAGGATA
696 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGC-GCAGCAGGATC
* * * * * ** * * *
15475469 GGCAGCAAGCAGAGGGGGACTCGATCGATCACCAGCTTACACATCCTGTTCTTTTCATGGGTTGA
760 GGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTC-TGGGCTGA
15475534 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
824 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15475567 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15475632 CTCGGGCATGTGCTGGTACCACATTTTTCTTCGCCGAGGCACCATCATCGGAGAACCTGACAGGC
66 CTCGGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGAC
* **
15475697 GGCATTGGGGTTTCGGTGATCGAGGGGGCCAGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
131 GGCATTGGGGTTCCGACGATCG-GGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
15475762 TGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCTTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
15475827 AGAGCAATTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTTAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
15475892 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * *
15475957 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTATCGAAAAGATTTTAAAA
387 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
* * * * * * * *
15476022 AATCCTGAACTGCAAAAAGTTTTGAAAATCTTAAAAAATAGAAAATGAGTCGTATTGCCATGAAA
452 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
15476087 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
15476152 AGAAATATGAAGATGCAG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
582 AGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
15476216 TTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGG
646 CTCTCTGGCCAGCGTAGTGCCCG--CG-CCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGG
* * * * * * * *
15476281 AGTTCATTCCCAGTCTAAGATCGGATCGGA-TAGGGGGTTGTGGTAGTAGGATCGGTAGCACGCA
708 AGTTCATTCCCAGTCTAAGATCAGACCGAACTA-AGGGTTG-CGCAGCAGGATCGGCAGCACGCA
* * * * *
15476345 GAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGTTGGCTGAGTGCCCGCACG
771 GAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCT-CTGGGCTGAGCGCCCGCACG
*
15476410 CTCTTTTCGTGGGTTGACTTAG
835 CTCGTTTCGTGGGTTGACTTAG
*
15476432 GCATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCACAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T--A-AG---A-T--C-G-----GACCGGA-CAGA-
* * * * * ** *
15476497 CGAGGATTACAGTAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTCTCTTCGTCGGGG
43 -G-GG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGG
* * * * * *
15476562 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCAACGGCATTGAGGATCTGGCGTTCGGGGGGG
105 CACCA---T-----CA---TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
*
15476627 CCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
158 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
15476692 TCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
222 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
15476757 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTTC-CAAAATCTTGTACA
287 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG-TCACAAAATCTTGTACA
* *
15476821 CTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAATATACAAGGATCACGTCTACCAAG
351 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * ** *
15476886 GTT-GGGACAAAAATGCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAA
416 TTTGGGGCCAAAACT-CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
** * * * *
15476950 TTTTGAAAAATAGAAAACAAGTCTTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCGTTG
480 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
15477015 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTGAACCCAC
545 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
15477080 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC-GACGTGGTGCCCAC-CCG
610 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCGCGCCG
* * * * *
15477143 CCTGATCATTTCGTCGGTCGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-AGA
674 CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-A
* * * * * *
15477207 CTGAGGGTTTCAGCAGCAGGATCGTCAGCTCGCAGAGGGGGACTCG-GCTGA-CCCTCGGCTTAC
738 CTAAGGGTTGC-GCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGATC-GATCCC-CGGCTTGC
* * *
15477270 CCATCTTG-CCC-CTCTGGCCGACTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
800 GCATCCTGCCCCTCTCTGG--G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ***** * *
15477328 GCATAAGGAGTTCATTCCTAGTCTAAGCAT---A-CGGAGCATTTTTCTTCATCGG-GGCACCAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGA-CA-GAGGGTT--GCGGCAGCA-CAT
* * * * * * * **
15477388 -C---G-TCGGAGCAT-CGCCGG-A-GA-A----CCTAAC--C--GGCA--A-CATTGGGGTTCC
60 GCTGGGCTCGG-GCATGTGCTGGTACCACATTTTTCT-TCGTCGGGGCACCATCATCGGAGAACC
* ** * **** * *
15477433 -GA-CGA--TCA--GGGGTTTTG--G--GGGGGTTGTGCGCATATGATGTGCG---ATG-GGTGC
123 TGACCGACGGCATTGGGGTTCCGACGATCGGGG--G-GC-CGGGGGGTGTGCGCACATGATGTGC
* ** ** * * ***** *
15477484 TGGTACTTGGCCCTTATA-TTGGCCC-TCTA-T--CCCTC-ATCAAAATTCCAGAA-CTC-ACAC
184 --G-A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CA-AACCTCGAGA-
* * * *** * *
15477541 CCCCTTAAAGAGCATT--TGAG-AT-------TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
242 --ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
15477596 TCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTTCGAGTTTTTAGCTAA
305 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGA
* * * * *
15477661 ATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACATGTACCAAGTTTGGGACCAAAAATCC-
369 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* ** * *
15477725 TTCTAAAAAAATTTTAAAAAATTTCGAATCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAAC
434 TTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAC
* * *
15477790 GAGTCGTCTAGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCAT
498 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * * *
15477855 AAAAATGGCATCAGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCATCCTATCGATCT
563 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
15477920 ACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCTCGCCCGCCCCCCCGCTCGTTTC
628 ACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCG--CG-CCG----CCCGCTCATTTC
* * ** * * *
15477985 ATCTGTTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATTGGATCAGATC-GAGGGTCATG
686 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACTAAGGGT--TG
* * * * ** * * *
15478049 -GTAGCAGGATCGGCAGCACGCAGAGTGGGTCTTGCCCGATCCTCGGCTTGCGCATCCCGCCTCT
748 CGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCT
*
15478113 GGC-CT--GCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAG
813 --CTCTGGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15478156 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A---CC-G-----GA-CAG---AG--
*
15478221 CAAAGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCGTC-GGG
44 ----GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGG
** * *
15478285 CACCATCACCGGTGCATCGTCGGAGAACCTGA-TTAGCGGCGTTGGGGTTCC-AGCGGTCGGGGA
105 CA-C--CA----T-CA---TCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGA-CGATCGGGG-
* * *
15478348 GGCCGAGGGGGTGTGTGCGCACATGATGTGCGATTGGTACTGGTACTTGGCCCCTATATTGGCCC
156 GGCC--GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
15478413 CTTATCCCTCATCAAACCTCGAGAACT-AGCACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
218 CCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * **
15478477 TGCTGCCAGCAGCCATTAAAGTGTCTAAAATGGGGACACCATTTTCAAATGGTCACAAAATCTTG
282 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
15478542 TACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATATAC
347 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * *
15478607 CAAGTTTGGGGCCAAAATTCC-TTCCAAAAGAATTTTAAAAAGTCTCGAACCGTAAAAAGTTTTG
412 CAAGTTTGGGGCCAAAACTCCTTTCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTA
* * * * *
15478671 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATTAAAATTCACGTGAAGGCTTAATGGACC
476 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15478736 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGGCTAAAC
541 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
15478801 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCC
606 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTG-C--CC
* ** * *
15478866 TGCCCGCTCGCCCGCTCGTTTCGCCTGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
668 -G--CGC-CGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * *
15478931 CAGATCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCAGGTAGAGGGGGAC-CCAGTCGATCCC
729 CAGACCGAACTAAGGGTTGC-GCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGA-TCGATCCC
* * * * * * * *
15478995 CGGCTCGTGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCTCGCTCGTTTCATGGGTTGACTTT
792 CGGCTTGCGCATCCTGCCCCTCT-CTGGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
15479060 G
856 G
* * * * *
15479061 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15479126 CTCAGGCATGTGATGGTGCCACATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTACCACATTTTTCTTCGTC-GGGGCACCA---T-----CA---TCGGAG
* ** * * *
15479190 AACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGAGGGGGTGTGCACATATGATGA
119 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGT
*** *
15479255 GCGATGGGTGCTGGTACTTTTTCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15479320 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15479385 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15479449 G-GCCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAA
377 GTG-CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* ** * *
15479513 AAATTTTAAAAAATCCTGAACCACAAAAA-TTTTCAAAAATCGTGAAAAATAAAAAAGGAGTCGT
441 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
15479577 CTTGCCATGGAACTTCATGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCACAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
15479642 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
570 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
15479707 ACGCATCCTGTCTCT
635 GCGCATCCCGTCTCT
15479722 TTGGTCGGTA
Statistics
Matches: 4139, Mismatches: 600, Indels: 554
0.78 0.11 0.10
Matches are distributed among these distances:
820 2 0.00
821 76 0.02
822 267 0.06
823 10 0.00
824 1 0.00
826 3 0.00
828 69 0.02
829 13 0.00
830 105 0.03
831 22 0.01
832 6 0.00
833 11 0.00
834 17 0.00
835 1 0.00
836 6 0.00
837 1 0.00
838 2 0.00
840 2 0.00
841 3 0.00
842 7 0.00
845 2 0.00
847 4 0.00
853 5 0.00
854 22 0.01
855 59 0.01
856 122 0.03
857 419 0.10
858 21 0.01
859 31 0.01
860 223 0.05
861 262 0.06
862 5 0.00
863 5 0.00
864 5 0.00
865 173 0.04
866 19 0.00
867 19 0.00
868 27 0.01
869 5 0.00
870 9 0.00
871 73 0.02
872 43 0.01
873 15 0.00
874 8 0.00
876 7 0.00
877 240 0.06
878 194 0.05
879 55 0.01
880 45 0.01
881 12 0.00
882 3 0.00
884 1 0.00
885 4 0.00
886 6 0.00
887 11 0.00
888 4 0.00
889 6 0.00
890 5 0.00
891 73 0.02
892 8 0.00
893 7 0.00
894 15 0.00
895 15 0.00
896 168 0.04
897 9 0.00
898 2 0.00
899 12 0.00
900 256 0.06
901 200 0.05
902 48 0.01
903 389 0.09
904 74 0.02
905 61 0.01
906 3 0.00
907 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (856 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCAGCGTAGTGCCCGCGCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGCAGCAGGATCGGCAGCACGCAGAGGGGGACT
CGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTCTGGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAG
Found at i:15476469 original size:26 final size:26
Alignment explanation
Indices: 15476433--15476483 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15476423 TTGACTTAGG
* *
15476433 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCACAGTCTAAC
15476459 CATACAGAGTTCATTCACAGTCTAA
1 CATACAGAGTTCATTCACAGTCTAA
15476484 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCACAGTCTAAC
Found at i:15478192 original size:26 final size:26
Alignment explanation
Indices: 15478156--15478208 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15478146 CTTGACTTAG
15478156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15478182 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15478208 G
1 G
15478209 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15479566 original size:26 final size:26
Alignment explanation
Indices: 15479511--15479567 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
15479501 CTCCTTCCGA
**
15479511 AAAAATTTTAAAAAATCCTGAACCAC
1 AAAAATTTTAAAAAATCCTGAAAAAC
* * *
15479537 AAAAATTTTCAAAAATCGTGAAAAAT
1 AAAAATTTTAAAAAATCCTGAAAAAC
15479563 AAAAA
1 AAAAA
15479568 AGGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.23
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCCTGAAAAAC
Found at i:15480251 original size:513 final size:512
Alignment explanation
Indices: 15479259--15480255 Score: 1572
Period size: 513 Copynumber: 1.9 Consensus size: 512
15479249 TGATGAGCGA
* ***
15479259 TGGGTGCTGGTACTTTTTCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGGGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
15479324 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAATGAG
66 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCAGAAATGAG
15479389 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGGCCA
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGGCCA
15479454 TGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
196 TGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
15479519 TAAAAAATCCTGAACCACAAAAATTTTCAAAAATCGTGAAAAATAAAAAAGGAGTCGTCTTGCCA
261 TAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
* * * *
15479584 TGGAACTTCATGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGG
326 TGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGG
*
15479649 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
391 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATC
* * * *
15479714 CTGTCTCTTTGGTCGGTATAGTGCCCGCCTGCCCACCCGCCCGCACATGATGTGCTG
456 CCGTCTCTGTGGCCGGCATAGTGCCCGCCTGCCCACCCGCCCGCACATGATGTGCTG
* * *
15479771 TGGGGGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACC
1 TGGGGGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
**
15479836 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGGCAATAGCCATTAAAGTGTCTA-AAATG-
66 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTC-AGAAATGA
15479899 GTGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
130 G-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG-
* * *
15479963 G-CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTTCAAAACTCCTTCCGAAAA
192 GCCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGG-CCAAAACTCCTTCCGAAAA
* *
15480027 AATTTTAAAAAAT-CTCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
256 AATTTTAAAAAATCCT-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
** * *
15480091 TTGCCATGAAACTTCACGTGAAGCCTTAAGGGATGATTTTATGAATTTACAAGCCATAAAAATGG
320 TTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
* * * *
15480156 CATTGGGATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTG
385 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTA
*
15480221 CGCATCCCGTCTCTGTGGCCGGCGTAGTGCCCGCC
450 CGCATCCCGTCTCTGTGGCCGGCATAGTGCCCGCC
15480256 CGTCCGCTCG
Statistics
Matches: 442, Mismatches: 37, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
511 49 0.11
512 170 0.38
513 223 0.50
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (512 bp):
TGGGGGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCAGAAATGAG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGGCCA
TGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATC
CCGTCTCTGTGGCCGGCATAGTGCCCGCCTGCCCACCCGCCCGCACATGATGTGCTG
Found at i:15480480 original size:26 final size:26
Alignment explanation
Indices: 15480444--15480494 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15480434 CTTGACTTAC
*
15480444 GCATACTGAGTTCA-TTCCTAGTCTAA
1 GCATACAGAGTTCATTTCC-AGTCTAA
15480470 GCATACAGAGTTCATTTCCAGTCTA
1 GCATACAGAGTTCATTTCCAGTCTA
15480495 GGCTCGGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:15482044 original size:26 final size:26
Alignment explanation
Indices: 15482005--15482057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15481995 GTTAACTTAG
*
15482005 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
15482031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15482057 G
1 G
15482058 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15482937 original size:26 final size:26
Alignment explanation
Indices: 15482908--15482960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15482898 GTTGACTTCG
*
15482908 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCAAGCCTAA
*
15482934 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGCCTAA
15482960 G
1 G
15482961 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGCCTAA
Found at i:15484287 original size:907 final size:900
Alignment explanation
Indices: 15481151--15489260 Score: 9906
Period size: 894 Copynumber: 9.0 Consensus size: 900
15481141 GTTGGTTTAG
* * ** * * ** *
15481151 GCATACGTAGTTCATTCCCAGTCTAAGATCGGATTGGGCTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * *
15481216 CTCAGGCATGTGCTGGTGGCACA-TTTTCTTCGTCGGGGCACCAT---C---G-A----CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
15481269 ACCGGACCGGCGGCATTGGGGTTTCGACAATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
15481333 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA-
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15481397 AACCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15481462 GGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15481527 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGACCAAAGCTCCTTCC-AAAAC
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-
* * *
15481591 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT-ATAAAAAATA-AAAATCGAGTTGTC
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTC
* * *
15481654 TTGCCATGAGACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCTATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15481719 CATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15481784 CGCATCCCGTCTCTCTGGCAGACGTAGT-----GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGGT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
15481844 TAGACATACGGAGTTCATTCCTAGTCTAAGATCGGACC-GGCCTGAGGGTTGCAGCAGCAAGATC
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC-GAGGGTTGCAGCAGCAGGATC
* * * * * *
15481908 GGTAGCACGTAGAGGGGGACCCGATCGATACTCGGCTT-CACATCCCGGCCCTCTGGCCGGCTGA
778 AGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *** * * *
15481972 AC-CCCCGCACGCTCGTTTTACGGGTTAACTTAGGCATATGGAATTCATTCCCAGTCTAA
843 GCGCCCCGCA--CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15482031 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCACATGCTGG
* * * * * * * *
15482095 GCTTGGGCATGTGATGGTGCTGCATTTTTCTTCATTGGGGCACCATCACCGGAGAATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * ** * *
15482160 AACCTGACCGACGGCATTAGGCTTCCGATGATCGAGGGGGCCGGGGGGGTGTGCGCGCATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
15482225 GCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15482290 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15482355 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTG-ATTTCTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTT
* * * * ** ** * *
15482419 TATGGATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTTGGATCAACGCCCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
15482484 AAATTTTAAAAACTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAATAA-AGAAAATGAGTTGT
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA-AATAGAAAACGAGTCGT
*
15482548 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15482613 GCATTGGCACATCA-AAATAAGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCT
583 GCATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** ** * * *
15482677 TGCGCATCCCGTCAATCTGGTAGGGGTAGTGCCCGCCTACCCGCCCGCCCGCTTGTTTCGTCGGT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * **
15482742 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAG
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAG
* * * *
15482806 GATCAGCAGCACGTAGAGGGGGACCC-AGGCGATCCCCAGCTTGTGCATCCCGCCCCTTTGGCCG
774 GATCAGCAGCACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
15482870 ACTGAGC-CCCCGTACGCTCGTTTCGTGGGTTGACTTCGGCATACGGAGTTCATTCCTAGCCTAA
838 GCTGAGCGCCCCG--CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15482934 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * *
15482999 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
15483064 ACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGAGTGGGTGCGCGCACATGATAT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* *
15483129 GTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15483194 CACCCCCTTAAAGAGCTTTTGACATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15483259 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
15483324 GTGCATGCCAAAAAAAATACAAGGATCACATCTATCAGGTTTTGGGCCAGAAA-TCCTTTC-AAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAA
* * **
15483387 AATATTTTAAAAAATCCCGAACCACAAAATGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGT
454 AA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
15483452 CTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15483517 GCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTT
583 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * * *
15483582 GCGCATCCCGTCTCTCTCGTTGGCGTAGTGCCCAACCTCCCGCCCGCCCGCCCATTTCATCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
15483647 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGCTGCAGTAGTAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGG
* * * * * * * *
15483712 CTTAGCAGCACGTAGAGTGAGACCTGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGTCCGGC
775 ATCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15483777 TGAGCGCCCACGCACTTGTTTCGTGGGTTAACTTAGGCTTACGGAGTTCATTCCCAGTTTAA
840 TGAGCGCCC-CGCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15483839 ACATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * * * * *
15483904 CTCGGGCATGTGGTGGGGTCGCATTTTTCATCGCCAGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
15483969 ACCTGATCGACAGCATTGGGGTTCCGGTGATCGGGGGGGCCGACGGGGGGGTGTGCGCACATGAT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-C--CGGGGGGGTGTGCGCACATGAT
* * * *
15484034 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACTTTGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15484099 CACACCCCCTTAAAGAGCA-TTGCAGATTTTGCAGGTTTGCTGCCAGTAGCAATTAAAGTATCTG
258 CACACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
15484163 AAATGGGGACACTTTTTCCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
15484228 TTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
387 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
15484293 AAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
452 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
15484358 TCTTTCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * ** * *
15484423 GGCATTCGCATGCCGAAATATGAAGATGTGCCTAAACCTAGCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
15484488 TGCGCATCCCATCTCTCTGGCCAGCGTAGTG-CCCGCCCGACCGCTCGCCCATTCGTTTCGTCGA
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCG--C-C-CGCCCGCTCGTTTCGTCGG
* * * * * *
15484552 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAAACCGAGGGTTACAGCAACA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCA
* * ** * * *
15484617 GGATC-GATAGCGCGTAGAGGGGGACCCGATCGATCTTCGGCTTGCGCAACCCGCCCCTATGGTC
773 GGATCAG-CAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
15484681 GGCTGAGCG-CCTGCACGCTCATTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCCCTGTCTA
837 GGCTGAGCGCCCCGCA--CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
15484745 A
900 A
* * * *
15484746 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
15484811 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * * *
15484876 ACTTGACCGGTGGCATTGGGGTTTCGGCGAT----------TGGGGGTTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
15484931 CGATGGGTGCTAGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
15484996 ACCCCCTTAAAGATCATATGAGATTTTACAGGTTTGCTGTCACTAGCCATTAAAGTGTTTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15485061 GGTGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTC
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
15485126 TGCATGCCAACAAAAATACAAGGAGCATGTCTACGAAGTTTGGGGCTACAACTCCTTCTGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
15485191 ATTTTAAAAAATCCCAAACCGCAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
456 ATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15485256 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
15485321 ATTGGCACGTAGAAATATGAAGATGTACATCAACCCACCTACCATCTTATCGATCCACAGCTTGC
585 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15485386 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCCGCCCG-CCG---GCTCGTTTCGTCAGTTGACTT
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** *
15485446 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAAGATCAG
715 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCAG
* * * * ** **
15485511 CAGCATGTAGTGGGAGACCCGACCGATCCTTGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGC
780 CAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
15485576 -ACCCGTACGCTCATTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGCCTAA
845 GCCCCG--CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15485633 GCATACAGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAA-GAT-C--AG---A----C---C---G---G-A-C----
* * * * * *
15485698 CGAGGGTTGCGGCAGCACATGCTGGGCAT-GGGCATGTGTTGGTGTCGCACTTTTCTTCATCGGG
40 CGAGGGTTACGACAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * * * *
15485762 GCACCATCGTCGGAGCATCACCGGAGAACCTG-TCTAGCAGCATTGGCGTTCCGGCGATCAGGAG
104 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGG
* * * * * * **
15485826 CGCCAGTGCGAGTTTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTTCC
168 GGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
15485891 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT-CTAGGTTT
232 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTT
* * *
15485955 GCTGGCAGTAGCCATT-AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGC
296 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
15486019 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
361 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * ** * **
15486084 AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCTAAATCGCAAAAAGTTTTGAA
426 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * * *
15486149 AATCATGAAAAATAGAAAAGGAGTTGTCATGGCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
491 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
15486214 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATTTGAAGATGTGCCTAAACCC
556 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * *
15486279 AGCTACCACCCTATCGATGCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTG-CCCGCCC
621 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCC
* ** * *
15486343 GCCCGTCCGTCTGCTCATTTCGTCGGTTGGCAAAGGCATACGGAGTTTATTCCTAGTCTAAGATC
686 GCCCG-CC--C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * * *
15486408 GGATCAGACCGAGAGTTGCGGTAGTAGGAT-TGACAACACG-CGAAGGGGGACCAGATC-ACCCC
747 GGACCAGACCGAGGGTTGCAGCAGCAGGATCAG-CAGCACGTAG-AGGGGGACCCGATCGATCCC
* * * * * *
15486470 CAGCTTGCGCATCTCACCCCTTTGGCCGACTGAGC-ACCCGCACGCTCGTTTCGTGGGTTGACTT
810 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCCGCA--CTCGTTTCGTGGGTTGACTT
* *
15486534 AGGCTTACGGAGTTCATTCCAAGTCTAA
873 AGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
15486562 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * **
15486627 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGTGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * **
15486692 ACCTGACTGGCGGCATTGGGGTTCCAACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
15486756 CGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
15486821 TCCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGTTGGCAGTAGCCATTAAAGAGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15486886 GGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT-GCTGAATTCTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
15486950 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * * * *
15487015 ATTTTTAAAAATATCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15487080 GCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15487145 TTGGCACGTAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
15487210 CATCCCGTCTCTCTGG-CGACGTAGTGCTCGCCCGCCCGCCCACCGCCCGCTCGTTTCGTCAGTT
651 CATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCCGCCCG--C-CCGCCCGCTCGTTTCGTCGGTT
* * * * *
15487274 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAACATCAGACC-GAACTGAGGGTTGCAGCAACAG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCAGCAGCAG
* * * * * * *
15487338 GATCAGCAGCACGCAGAGAGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGTCGCTCTGGCCGA
774 GATCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
15487403 CTGAGCG-CCCGCA--CG-TTCGT---TT--C----G--T--GG-GTTGA----C--T-TAG
839 CTGAGCGCCCCGCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15487440 GCATACGGAGTTCATTCCCAGTCCAAGATCAGACCGGACCGAGGG-TAGCGTCATCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTA-CGACAGCACATGCTGG
* * * * *
15487504 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATCGTCGAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGA
* * * * * *
15487568 GAACTTGACTGACGGCATTAGGGTTCCGGCGATTGAGGGGGCCGGGAGGGGTATGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGAT
15487633 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15487698 CACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
15487763 AATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
15487828 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * *
15487893 AAAATTTGAAAAAATCATGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
15487958 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
15488023 CCATTGGGATGAAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTT
583 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *** * *
15488088 ACGCATCCTGTCTCCCTGGCCGGCGTAGT-----GCCCTTTCGCCCGTTCCTTTCGTCGGTTGGC
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * *
15488148 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGTGGTAGCAAGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATC
* *
15488213 GGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGA
778 AGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
15488278 GCG-CCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTGCATTCCTAGTCTAA
843 GCGCCCCG--CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * ** * * *
15488337 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGATGGTTGTGGCAGAACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
15488402 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCTCCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
15488467 ACCTGATCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATTTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
**
15488531 CGATGGGTGCTAATACTTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15488595 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTATCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15488660 GGGGACACGTTTTTCAAATGG-CAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15488724 ATGTATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
15488789 AATTTTTAAAATTCTCGAACCGCAAAAAGTTTCAAAACTCATGAAAAATAGAAAACAAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15488854 TGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
15488918 ATTGGCACACAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15488983 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCCGCCCACCCGTCCGCTCTTTTCGTCGGTTAGG-T
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT-GGCT
* * *
15489046 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGC-GACAGCAGGATC
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCAGGATC
* * * * *
15489110 -GACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGTCGGCTG
778 AG-CAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
15489174 AGCG-CCTGCACGTTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTGCTAGTCTAA
842 AGCGCCCCGCAC--TCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15489234 GCATACGGAGTTCATTGCTAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
15489261 CATACGGAGT
Statistics
Matches: 6229, Mismatches: 822, Indels: 341
0.84 0.11 0.05
Matches are distributed among these distances:
871 136 0.02
872 1 0.00
873 2 0.00
874 4 0.00
875 2 0.00
876 4 0.00
877 3 0.00
878 145 0.02
879 5 0.00
880 257 0.04
881 288 0.05
882 8 0.00
884 1 0.00
885 5 0.00
886 2 0.00
887 194 0.03
888 5 0.00
889 4 0.00
890 6 0.00
891 2 0.00
892 39 0.01
893 175 0.03
894 803 0.13
895 395 0.06
896 17 0.00
897 347 0.06
898 4 0.00
899 5 0.00
900 11 0.00
901 390 0.06
902 125 0.02
903 468 0.08
904 544 0.09
905 291 0.05
906 17 0.00
907 750 0.12
908 10 0.00
909 2 0.00
912 1 0.00
913 99 0.02
914 1 0.00
915 1 0.00
922 191 0.03
923 152 0.02
924 122 0.02
925 2 0.00
927 2 0.00
928 2 0.00
929 104 0.02
930 85 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCAGC
AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCCGCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15484750 original size:26 final size:26
Alignment explanation
Indices: 15484720--15484772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15484710 GTTGAGTTAG
*
15484720 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15484746 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15484772 G
1 G
15484773 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15485637 original size:26 final size:26
Alignment explanation
Indices: 15485608--15485685 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
15485598 TTGACTTAGT
*
15485608 CATACGGAGTTCATTCCCAGCCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
* *
15485634 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAG
15485660 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15485686 ATTGAATCGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15488347 original size:26 final size:26
Alignment explanation
Indices: 15488311--15488363 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15488301 GTTGACTTAG
*
15488311 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
* *
15488337 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
15488363 G
1 G
15488364 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:15489237 original size:26 final size:26
Alignment explanation
Indices: 15489208--15489286 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
15489198 GTTGACTTAG
15489208 GCATACGGAGTTCATTGCTAGTCTAA
1 GCATACGGAGTTCATTGCTAGTCTAA
15489234 GCATACGGAGTTCATTGCTAGTCTAA
1 GCATACGGAGTTCATTGCTAGTCTAA
*
15489260 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTGCTAGTCTAA
15489286 G
1 G
15489287 ATCGGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCTAGTCTAA
Found at i:15489413 original size:211 final size:211
Alignment explanation
Indices: 15489049--15489471 Score: 609
Period size: 211 Copynumber: 2.0 Consensus size: 211
15489039 GTTAGGTTAG
*
15489049 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* ** ** * *
15489114 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGC
66 GCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGAGCGC
* * *
15489179 CTGCACGTTCGTTCTGTGGGTTGACTTAGGCATACGGAGTTCATTGCTAGTCTAAGCATACGGAG
131 CTGCACGCTCGTTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
15489244 TTCATTGCTAGTCTAA
196 TTCATTCCCAGTCTAA
* * **
15489260 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGA-C
* * *
15489324 AGCACGTAGAGAGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCTGCTGAGCG
65 AGCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGAGCG
*
15489389 -CTCGTACGCTCGTT-TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
130 CCT-GCACGCTCGTTCT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
15489452 GAGTTCATTCCCAGTCTAA
193 GAGTTCATTCCCAGTCTAA
15489471 G
1 G
15489472 ATCAAACCAG
Statistics
Matches: 188, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
210 4 0.02
211 184 0.98
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (211 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGAGCGC
CTGCACGCTCGTTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAA
Found at i:15489448 original size:26 final size:26
Alignment explanation
Indices: 15489419--15489471 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15489409 GTTGACTTAG
15489419 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15489445 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15489471 G
1 G
15489472 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15491222 original size:26 final size:26
Alignment explanation
Indices: 15491184--15491235 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15491174 TTGACTTACA
15491184 CATACAGACTTCATTCCCAGTCTAAG
1 CATACAGACTTCATTCCCAGTCTAAG
* * *
15491210 CATACGGAGTTCATTTCCAGTCTAAG
1 CATACAGACTTCATTCCCAGTCTAAG
15491236 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGACTTCATTCCCAGTCTAAG
Found at i:15492116 original size:26 final size:26
Alignment explanation
Indices: 15492086--15492138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15492076 CTTGACTTAG
15492086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15492112 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15492138 G
1 G
15492139 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15493867 original size:26 final size:26
Alignment explanation
Indices: 15493831--15493935 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
15493821 GTTGACTTAG
15493831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15493857 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15493883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
** *
15493909 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15493935 G
1 G
15493936 ATCGGATCGA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15494664 original size:26 final size:26
Alignment explanation
Indices: 15494623--15494680 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
15494613 CATCGGTTGG
* *
15494623 CTAAGGCATACGGAGTTCATTCCTAGT
1 CTAA-GCATACAGAGTTCATTCCCAGT
15494650 CTAAGCATACAGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
15494676 CTAAG
1 CTAAG
15494681 ATCAGACCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAGT
Found at i:15495328 original size:743 final size:736
Alignment explanation
Indices: 15493879--15496102 Score: 2959
Period size: 743 Copynumber: 3.0 Consensus size: 736
15493869 CATTCCCAGT
*
15493879 CTAA-GCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCTAGTCTAAGATCGGAT
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTCTAAGATC-GA-
* * *
15493943 CGAACCGAGGGTTCCGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGT
63 CGAACCGAGGGTTCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT
* **
15494008 CGGGGCACCATCGTCGGAGCATC-ATCGGAGAACCTGACCGACGGCATTAGGGCTCTGACGATCG
127 C-GGGCACCATCG-CGGAGCATCGAT-GGAGAACCTGACCGACGGCATTAGGGCTCCGGTGATCG
** * * *
15494072 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGACTACTGGTACTTGTCCCATATATTGGC
189 GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
15494137 CTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
253 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
15494202 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
318 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTT
* * * *
15494267 GTACACTTCGAGTTTTTACCTGAATTGTTTTGTGCATGCCAATAAAAATAAAAGGATCACGTCTA
383 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * *
15494332 CCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGTC-AAAAGTTTC
448 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG-CAAAAAGTTTC
* * *
15494396 AAAAATCGTAAAAAATAGAAAATGATTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGAC
512 AAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
15494461 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
577 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
* * * * * *
15494526 CCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGCCTCTCTTGTCGGCGTAGTGCCCGC
642 CCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
*
15494591 CTGCTCGCCCGCCCGTTCGTTTCATCGGTTGG
707 C-GCTCGCCCGCCCG-TCGTTTCGTCGGTTGG
*
15494623 CTAAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTCTAAGATC-GA-
15494688 CGAACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT
63 CGAACCGAGGGTT-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT
** *
15494753 CAGGGCACCATCGCCGGAGCATCGATGGAGAACCTGACCGACGGCATTTTGGCTCCGGTGATCGT
127 C-GGGCACCATCG-CGGAGCATCGATGGAGAACCTGACCGACGGCATTAGGGCTCCGGTGATCGG
* * *
15494818 GAGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCC
190 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
15494883 CCTATCTCTCATTAAA-CTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
255 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
15494947 GCTGCCAATAACCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGT
320 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGT
* *
15495012 ACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACC
385 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* *
15495077 AAGTTTCGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
450 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
* * *
15495142 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACTAT
515 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
15495207 TGTATGAATTTACAAGCCATAAAAATGGCATTGGAACACAAAAATATGAAGATGTGCCTAAACCC
580 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* * *
15495272 ACCTACCACCATATCGATCCACGGTTTGTGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCG
645 ACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCG
* *
15495337 C-CAGTCCGCCCGCTCGTTTTGTCGGTTGG
709 CTC-GCCCGCCCG-TCGTTTCGTCGGTTGG
* *
15495366 CTTAGGCATACGGAGTTCAATCCCAG--T---C-T-A-AG---A-T--C-G-----GATC-A--A
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGAGTTCATTCCCAGTCTAAGATCGACGA
* ** * * * *
15495408 ACCGAGGGTTGCGGCAGCACATGCTGGGCTAAGGCTTGTGCTGGTGCCCCAATTTTCTTTGTCGG
66 ACCGAGGGTT-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
** * * * *
15495473 G-------GC--AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGGTCGGGTGATCGGGGGGG
130 GCACCATCGCGGAGCATCGATGGAGAACCTGACCGACGGCATTAGGGCTCCGGTGATCGGGGGGG
* *
15495529 CCGACGGGGGTGTGAGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
195 CCG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** *
15495594 ATCCCTCATCAAACCTCGAGAACTCACACCCCCCCAAAGAGCATTTGAGATTTTACAGGTTTGTT
258 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15495659 GCCAGTAGCAATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAAT-GATCACAAAATCTTGTA
323 GCCAGTAGCCATTAAAGTGTCT-AAAATGGGGACACTTTTTTCAAATGGA-CACAAAATCTTGTA
* * * * *
15495723 CACTTCGAGTTTTTAGCTGAA-GTTTATGTGCATGCCAACAAAAATACAAAGATCTCGTCTACCA
386 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * * * **
15495787 AGATTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAATGTTTTGAAA
451 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
* *
15495852 ATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATT
516 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
15495917 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTGAACCCA
581 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
* * * *
15495982 CCTACCACCTTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACATAGAG--C-CCGCT
646 CCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCT
*
15496044 CGCCCGTCCAGTCGTTTCGTCGGTTGG
711 CGCCCG-CCCGTCGTTTCGTCGGTTGG
* *
15496071 CTTAGGCATACGGAGTTTATTCCCTA-TCTAAG
1 CTAAGGCATACGGAGTTCATTCCC-AGTCTAAG
15496103 ATTGGATTAG
Statistics
Matches: 1325, Mismatches: 136, Indels: 72
0.86 0.09 0.05
Matches are distributed among these distances:
705 45 0.03
706 51 0.04
707 2 0.00
708 69 0.05
709 330 0.25
710 57 0.04
716 3 0.00
717 56 0.04
720 1 0.00
722 4 0.00
727 1 0.00
728 1 0.00
730 1 0.00
731 1 0.00
734 2 0.00
735 1 0.00
737 1 0.00
738 1 0.00
741 1 0.00
742 2 0.00
743 447 0.34
744 71 0.05
745 173 0.13
746 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (736 bp):
CTAAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGAGTTCATTCCCAGTCTAAGATCGACGA
ACCGAGGGTTCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
CACCATCGCGGAGCATCGATGGAGAACCTGACCGACGGCATTAGGGCTCCGGTGATCGGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCTCGCCC
GCCCGTCGTTTCGTCGGTTGG
Found at i:15498413 original size:26 final size:26
Alignment explanation
Indices: 15498375--15498427 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15498365 GTTGACTTAG
15498375 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGTAGTTCATTCCCAGTCTAA
15498401 GCATACG-ATGTTCATTCCCAGTCTAA
1 GCATACGTA-GTTCATTCCCAGTCTAA
15498427 G
1 G
15498428 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCCAGTCTAA
Found at i:15499998 original size:893 final size:893
Alignment explanation
Indices: 15498188--15503594 Score: 6764
Period size: 893 Copynumber: 6.1 Consensus size: 893
15498178 CCCGTTCGCT
* * * * *
15498188 CGCCTGC-CTGTTTCATCGGTTGGCTTAGGGATACAGAGTTCATTCCTAGTCTACGATCAGACCA
1 CGCCTGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* ** * ** * * * *
15498252 GATTGAGGGTTATAG-CAGTAGGATCGGCAGCATGCAGAGGGGGACCAAACCGATCCTCGAGTTA
65 G-TCGAGGGTTGCAGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTG
* * * *
15498316 CACATCCCGCCCCTCTGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
129 CGCATCCC-CCCTTATGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
15498381 GTAGTTCATTCCCAGTCTAAGCATAC-GATGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGG
193 GGAGTTCATTCCCAGTCTAAGCATACGGA-GTTCATTCCCAGTCTAAGATCGGACTAGACCGAGG
* *
15498445 GTTACAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTT-TTACCCCGGGGCACC
257 GTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTT-CGCCGGGGCACC
* * * * * * * *
15498509 ATTACT-GGAGCATCA-TCGAAGAACTTGATCGGCGACATTAGGGTTTCGACGATCGGGGGGGCC
321 A-TAGTCGGAGCATCACTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC
*
15498572 --GGGGG-GTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
384 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
15498634 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
449 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
15498699 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCGC-AAATCTTATACACTT
514 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
15498763 CGATTTTTTAGCTGAATTCTTTTTTGCATGCCAAAAAAAAGACAAGGATCACGTCTACCAAGTTT
579 CGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
15498828 GGGGACAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCAT
643 -GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
* * * * *
15498893 CAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAAGGACCATTGTATG
707 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
15498958 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCTTAAACCCACCTAC
772 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15499023 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCTGCC
837 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCC
* * * *
15499080 CGCCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
1 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
15499145 TCGAGGGTTG-AGAAAGTAAGATCGGTAGCATGCAGAGGGGGATCAGATCGATCCTCGACTTGCG
66 TCGAGGGTTGCAGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGCG
* *
15499209 CATCCCACCCTTATGGTCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGG
131 CATCCC-CCCTTATGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * *
15499274 AGTTCATTCCCAATCTAAGCATATGGTA-TTCATTCCCACTTTAAGATCGGACCAAACCGAGGGT
195 AGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGT
* * * * * *
15499338 TACGGCAGCACATGCTGGGC-TGCAGCATGTGCTGGTGCCACTTTTTTCTTCGTCGGTGCACTAT
259 TACGGCAGCACATGCTGGGCTTG-GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* * * **
15499402 AGTCGGAGCATCACT-GGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATAGGGGGGTTGGGG
323 AGTCGGAGCATCACTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
* * *
15499466 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGTCCCCTATCCCTC
388 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
15499531 ACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATA
453 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
15499596 GCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTTGAG
518 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
15499661 CTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTT
583 TTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-C
* * *
15499726 CAAAACTCCTTCCGAAAAAATTTTAAAAAATAC-CGAACTGTAAAAAGTATCAAAAATTGTGAAA
647 CAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
15499790 AATAGAAAACGAGTCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATT
711 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
15499855 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
776 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
15499920 CTATCAATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGCAGTGCCTGCC
841 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCC
* *
15499973 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAA
1 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-A
** * * * * * *
15500038 ACCGAGCGTTGCA-ATAGCAGGATCGACAGCAGGCAGAGGGGGACCCGATTGATCCCCGGCTTGC
65 GTCGAGGGTTGCAGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGC
* * *
15500102 GCATCCCGTGCC--ACTGGT-AGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
130 GCATCCC--CCCTTA-TGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
15500164 CGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGG
192 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGG
* * * * * * *
15500229 GTTGCGACAGCACATGCTGGGCTTGAGCACGTGCTGGTGTCGCATTTTTCTTTGCCAGGGCACCA
257 GTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * * * *
15500294 TCGTCGGACCATC-GTCGGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGTGCCGAG
322 TAGTCGGAGCATCACTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-G
* *
15500358 GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCC
386 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
15500423 TCATCAAACCTCAAGAACAT-ACACCCCCTCAAAGAGCATTTGAGAATTTATAGGTTTGCTTCCA
451 TCATCAAACCTCGAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
15500487 GCAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTT
515 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* ** * *
15500552 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACAACTACCAAATTCA
580 GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-T
* * *
15500617 GGGCCAAAACACCTTCC-AAAAAATTTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
643 GGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
* * *
15500681 GTAAAATCA-AAAATGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTAT
707 GAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
15500745 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTA
771 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
15500810 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCTGGCGTAGTGCCCGCCC
836 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTG-CC
* * * * *
15500869 GCGCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAATGTAAGATCGGAC
1 -CGC-CT-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
15500934 CAGACTAAGGGTTGCAG-CAGTAGGATCGGCAGCATGTAGAAGGGGACCCGACCGAACCCCGACT
63 CAGTC-GAGGGTTGCAGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACT
** * * * * * * *
15500998 TATGCATCCTGCCCCTCA--GCCAGCTGAGTGCCTGCACGCTCGTTTCATGGCTTGACTTAGGCA
127 TGCGCATCC--CCCCTTATGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * * *
15501061 TACGGAGTTTATTCCTAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGA-TAGGATCG
190 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTA-GACCG
* * * * * **
15501125 AGGGTTACGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGATGGGG--
254 AGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* *
15501188 -C--A--C----CATCAC-CGGAGAACCTGACCCACGGTATTGGGGTTCCGACGATCGGGGGGAC
319 CCATAGTCGGAGCATCACTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-C
* * * *
15501243 CGGGAGCGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTAT
383 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
15501308 CCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
448 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
15501373 CAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
513 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
15501438 TCGAGTTTTTAGCTGAACCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACTAAGTT
578 TCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
15501503 TGATGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGT-AAAAGTTTCAAAAATCG
642 TG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
* * *
15501567 TGAGAAATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTAT
706 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
15501632 GAATTTACAAGCCATAAAAATGGCATTGGCACCCAGAAATATGAAGATGTGCCTAAACCCACCTA
771 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
15501697 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACAG-AGTGCCCCCCCGCC
836 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC-GTAGTG----CCTGCC
* *
15501759 CGCCTGCCCGCTCGTTTCATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA
1 CGCCT----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
* * * * * * * *
15501823 ACCAAATTGAAGGTTAC-GATAGCAGGATCGGTAGCATGCAGAAGGGGACCCGATCGATCCCCGG
61 ACC-AGTCGAGGGTTGCAGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGA
* * * * * * * *
15501887 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCGCACACCCTCATTTCGTGGGTTGACTTAGGC
125 CTTGCGCATCCC-CCCTTATGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
15501952 ATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------C--A--A-ACCG
189 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCG
* * * * ** *
15501991 AGGGTTGCGGCAGCAAATGCTGGGCTCGTGCATGTGCTGGTGCCATATTTTTCTTTGCCGGGGCA
254 AGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* * * *
15502056 CCATCGTCGGAGCATC-GTCGGAGAACCTAACCGACGGCATTGGGGTTTC-AGCGATCGGAGGGG
319 CCATAGTCGGAGCATCACTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGG-GGGG
* * *
15502119 TCGGGGGGGTGTGCGAACATGCTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
382 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
15502184 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
447 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
15502249 CCAGTAGCCATTAAAGTGT-TCGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACA
512 CCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15502313 CTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAG
576 CTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
15502378 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTCGAACCGCAATAAGTTTCAAAAAT
640 TTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
* * *
15502443 CATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGT
704 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * *
15502508 ATGAATTTACAAGCCATAAAATTGGCACTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACC
769 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
15502573 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCC
834 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCT----
15502638 GCC
891 GCC
* * * **
15502641 CGCCCGCACGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTAG
1 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * *
15502706 ACCGAGGGTTGCAG-CAGCAAGATCGGTAGCATGCAGAGGGGGGCTCGATCGATCCCCGGCTTGC
66 -TCGAGGGTTGCAGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGC
* * * *
15502770 GCATCTCGCCCCTCA-GG-CTGGCTGAGCCCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATA
130 GCATC-C-CCCCTTATGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
15502833 TGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGATCAAAG
192 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGG
* * * * *
15502898 GTTGCCGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCA
257 GTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* *
15502963 TTG-CTGGAGCATCGA--CGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCC
322 TAGTC-GGAGCATC-ACTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC
*
15503025 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATC
384 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
15503089 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAAGTTTGCTGCC
449 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
15503154 AATAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACT
514 AGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
15503218 TCGAGTTTTTAGCTGAATTTTTTGGTGCATGCTAATAAAAATACAAGGATCACGTCTACCAAGTT
578 TCGAGTTTTTAGCTGAATTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** * * * **
15503283 TGGGAAAACAACTCCTTCCAAAAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCG
642 TGGGCCAA-AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
*
15503348 TGAAAAAT-GAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
706 TGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
15503412 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACTCACCT
770 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
*
15503477 ACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCC
835 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-T--GCC
* ** * *
15503540 CGCTTGCTTATTTGGTCGCTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15503595 CATACGGAGT
Statistics
Matches: 3930, Mismatches: 454, Indels: 255
0.85 0.10 0.05
Matches are distributed among these distances:
866 56 0.01
868 1 0.00
869 2 0.00
871 1 0.00
873 1 0.00
876 1 0.00
877 327 0.08
878 355 0.09
879 9 0.00
880 2 0.00
882 10 0.00
886 1 0.00
887 187 0.05
888 310 0.08
889 13 0.00
890 20 0.01
891 357 0.09
892 132 0.03
893 684 0.17
894 290 0.07
895 261 0.07
896 7 0.00
897 3 0.00
898 6 0.00
899 307 0.08
900 2 0.00
901 4 0.00
902 12 0.00
903 456 0.12
904 110 0.03
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
TCGAGGGTTGCAGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGCG
CATCCCCCCTTATGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTA
CGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATAGT
CGGAGCATCACTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCC
Found at i:15500195 original size:26 final size:26
Alignment explanation
Indices: 15500159--15500211 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15500149 GTTGACTTAG
15500159 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
15500185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15500211 G
1 G
15500212 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:15501087 original size:26 final size:26
Alignment explanation
Indices: 15501058--15501110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15501048 CTTGACTTAG
*
15501058 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
15501084 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15501110 G
1 G
15501111 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15502858 original size:26 final size:26
Alignment explanation
Indices: 15502828--15502880 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15502818 GTTGACTTAG
*
15502828 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15502854 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15502880 G
1 G
15502881 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15503279 original size:903 final size:900
Alignment explanation
Indices: 15501950--15503594 Score: 2613
Period size: 903 Copynumber: 1.8 Consensus size: 900
15501940 GTTGACTTAG
* * *
15501950 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAAGGTTGCCGCAGCAAATGCTGGG
* * *
15502015 CTCGTGCATGTGCTGGTGCCATATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGACGGAGA
* * * * *
15502080 ACCTAACCGACGGCATTGGGGTTTCAGCGATCGGAGGGGTCGGGGGGGTGTGCGAACATGCTGTG
131 ACCTAACCGACGGCATTGGGGTTCCAACGATCGGAGGGGGCCGGGGGGTGTGCGAACATGATGTG
*
15502145 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15502210 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTTAGAAAT
*
15502275 GGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
** *
15502340 TGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AACTCCTTCC-GAAA
391 TGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGAAAACAACTCCTTCCAAAAA
*
15502403 AAATTTGAAAAAATCTCGAACCGCAATAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGT
455 AAATTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATGA-AAAACGAGTCGT
* * *
15502467 CTTGGCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15502532 GCACTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCACTGGCACGCAGAAATATAAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTT
*
15502597 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCACGTTTCGTCGATT
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--T--CCGCCCGCCCGCACATTTCGTCGATT
15502662 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTAGACCGAGGGTTGCAGCAGCAAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTAGACCGAGGGTTGCAGCAGCAAG
15502727 ATCGGTAGCATGCAGAGGGGGGCTCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCAGGCTGGC
774 ATCGGTAGCATGCAGAGGGGGGCTCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCAGGCTGGC
15502792 TGAGCCCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
839 TGAGCCCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * * * *
15502854 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGATCAAAGGTTGCCGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAAGGTTGCCGCAGCAAATGCTGGG
* * *
15502919 CTTGGGCATGTGCTGGTGCC-TCATTTTTCTTCGTCGGGGCACCATTG-CTGGAGCATCGACGGA
66 CTCGGGCATGTGCTGGTGCCAT-ATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGACGGA
* *
15502982 GAACCTGACCGACGGCATTGGGGTTCCAACGATCGG-GGGGGCCGGGGGGTGTGCGCACATGATG
129 GAACCTAACCGACGGCATTGGGGTTCCAACGATCGGAGGGGGCCGGGGGGTGTGCGAACATGATG
*
15503046 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15503111 ACACCCCCTTAAAGAGTATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTAG-
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGT-TAGA
*
15503175 AATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
* * *
15503239 TTGGTGCATGCTAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGAAAACAACTCCTTCCAA
388 TT-GTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAAAACAACTCCTTCCAA
** * *
15503304 AAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATGAAAAATGAGTCG
452 AAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATGAAAAACGAGTCG
15503369 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
15503434 GGCATTGGCACGCAGAAATATGAAGATGTACCTAAACTCACCTACCAACCTATCGATCCACGGCT
582 GGCACTGGCACGCAGAAATATAAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCT
** ** * *
15503499 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTTGCTTATTTGGTCGCTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCACATTTCGTCGATTGGC
15503564 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
15503595 CATACGGAGT
Statistics
Matches: 676, Mismatches: 58, Indels: 19
0.90 0.08 0.03
Matches are distributed among these distances:
899 53 0.08
901 1 0.00
902 10 0.01
903 458 0.68
904 154 0.23
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAAGGTTGCCGCAGCAAATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGACGGAGA
ACCTAACCGACGGCATTGGGGTTCCAACGATCGGAGGGGGCCGGGGGGTGTGCGAACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTTAGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
TGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAAAACAACTCCTTCCAAAAAA
AATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATGAAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
CTGGCACGCAGAAATATAAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCACATTTCGTCGATTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTAGACCGAGGGTTGCAGCAGCAAGATCGGTA
GCATGCAGAGGGGGGCTCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCAGGCTGGCTGAGCCC
CCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
Found at i:15503604 original size:26 final size:26
Alignment explanation
Indices: 15503568--15503646 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15503558 CTTGGCTTAG
15503568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15503594 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15503620 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15503646 G
1 G
15503647 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15504297 original size:755 final size:762
Alignment explanation
Indices: 15502828--15504353 Score: 2292
Period size: 755 Copynumber: 2.0 Consensus size: 762
15502818 GTTGACTTAG
* * * *
15502828 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15502893 CAAAGGTTGCCGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGG
66 CAAAGGTTGCCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGGGG
*
15502958 CACCATTGCTGGAGCATCGACGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGG
131 CACCATTGC--G-G-AT--ACGGAGAACCTGACCGACAGCATTGGGGTTCCAACGATCGGGGGGG
* *
15503023 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTAT
190 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTAT
*
15503088 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAAGTTTGCTGC
255 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
15503153 CAATAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACT
320 CAATAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACT
* *
15503218 TCGAGTTTTTAGCTGAATTTTTTGGTGCATGCTAATAAAAATACAAGGATCACGTCTACCAAGTT
385 TCGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** *
15503283 TGGGAAAACAACTCCTTCCAAAAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCG
450 TGGGAAAACAACTCCTTCCAAAAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA
* *
15503348 TGAAAAATGAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
515 CGAAAAATGAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCAT
* * *
15503413 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACTCACCTA
580 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAGGTACCTAAACCCACCTA
* *
15503478 CCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCG-
645 CCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGAGCCCGTCCGCCCGC
* * *
15503542 CT-TGCTTA-TTTGGTC-GCTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
710 CTCCGC-TAGTTTCGTCTG-TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
15503594 GCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15503659 CGAGGGTTG-CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGT-ATTTTTCTTCATCGG
66 CAAAGGTTGCCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCTCATTTTTCTTCATCGG
* * * **
15503722 GGCACCA-T-C-G-T-TGGAGAACCTGACTGGCAGCATTGGGGTTCTGACGATC-GGGGGGCCGG
129 GGCACCATTGCGGATACGGAGAACCTGACCGACAGCATTGGGGTTCCAACGATCGGGGGGGCCGG
15503781 GGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCC
194 GGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCC
* *
15503846 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
258 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAA
* * * *
15503911 TAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTTTTCACTTTG
323 TAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCG
* *
15503976 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGG
388 AGTTTTTAGCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-G
* * * * * *
15504041 GGACAA-AACTTCTTCCAAAAAAATTTTACAAAATC-CTGAACCGCGAAAAGTTTCAAAAATTAC
452 GGAAAACAACTCCTTCCAAAAAAAATTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCAC
15504104 GAAAAAT-AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCAT
516 GAAAAATGA-AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCAT
* *
15504168 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGATATATGAAGAGGTGCCTAAACCCACCTA
580 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAGGTACCTAAACCCACCTA
* * *
15504233 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGAGCTCG-CTCGCCCG
645 CCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGAGCCCGTC-CGCCCG
15504297 CCTACCCGCTAGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
709 CCT--CCGCTAGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
15504353 G
1 G
15504354 ATCGAACCAG
Statistics
Matches: 692, Mismatches: 55, Indels: 33
0.89 0.07 0.04
Matches are distributed among these distances:
754 16 0.02
755 497 0.72
756 8 0.01
758 3 0.00
759 43 0.06
760 2 0.00
764 1 0.00
765 3 0.00
766 117 0.17
767 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (762 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CAAAGGTTGCCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGGGG
CACCATTGCGGATACGGAGAACCTGACCGACAGCATTGGGGTTCCAACGATCGGGGGGGCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAG
CCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAA
AACAACTCCTTCCAAAAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCACGAAAA
ATGAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTT
ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAGGTACCTAAACCCACCTACCAACC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGAGCCCGTCCGCCCGCCTCCGC
TAGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:15505482 original size:903 final size:896
Alignment explanation
Indices: 15503594--15511673 Score: 9918
Period size: 875 Copynumber: 9.1 Consensus size: 896
15503584 CCCAGTCTAA
* *
15503594 GCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15503659 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGG
66 CGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
* * * *
15503724 CACCAT-C----G--TT-GGAGAACCTGACTGGCAGCATTGGGG-TTCTGACGATCGGGGGGCCG
130 CACCATCCTGGAGCATTCGGAGAACCTGACCGACGGCATTGGGGTTTC-GGCGATCGGGGGGCCG
15503780 GGGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCC
194 GGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCC
15503845 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
15503910 GTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTTTTCACTT
323 GTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
15503974 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTT
387 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * *
15504039 GGGGACAAAACTTCTTCCAAAAAAATTTTACAAAATCCTGAACCGCGAAAAGTTTCAAAAATTAC
452 GGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
* *
15504104 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATG
516 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * *
15504169 AATTTACAAGCCATAAAAATGGCATTGGCACACAGATATATGAAGAGGTGCCTAAACCCACCTAC
581 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
15504234 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGAGCTCGCTCGCCCGCC
646 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * *
15504299 TACCCGCTAGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-GAACCA
711 -GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCA
* * * * * *
15504363 GACTGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGAGGGACCCGGCTGATCCCCAGCATGC
774 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGC
* * ** *
15504428 GCATCGCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTAATTTTGTGGGTTGACTTAG
839 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
15504486 ACATATGGAATTTATTCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGA
* *
15504550 CCGAGGGTTGCGGTAGCACATG-TGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGG
65 CCGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGG
*
15504614 GCACCATCGCTGGAGCATTATCGGATAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGG
129 GCACCATC-CTGGAGCA-T-TCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGG
* * *
15504679 TCGGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGATACTAGGCCCTTATATTGGCCCCCT
191 -C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCT
*
15504744 ATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
254 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15504809 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAA
319 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15504874 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAGGGATCACGTCTACCAAG
384 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
15504939 TTTGGGGCCGAAAATCCTTCTGAAAAAATTTTAAAAAATCTTGAAGCGCAAAAAGTTTCAAAAAT
449 TTTGGGGCC-AAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
* *
15505004 CATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGT
513 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
15505069 ATAAATTTACAAGCAATAAAGATGGCATTGGCACGTAGAAATAT-AAGATGTGCCTAAACCCACC
578 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* *
15505133 TACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCC
643 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCC
** * * *
15505198 GCCAGCCTACTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTCAGATCAGAC
708 GCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *** *
15505263 CACACCGAGGGTTGCGGCAGTAGGATCGGCACCACGCAGAGGGGGACCCAATCGATCCTCGGCTT
772 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTT
* * * * * *
15505328 ACGCATCCCACCCCTCTGGCCGGCTAAGCGCCCACAGGCTCGTTTCATAGGTTGACTTAG
837 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * *
15505388 GCAAACGAAGTTCATTCCTAATCTAAGCATACGAAGTTCTTTGCCAGTCTATGATCGGACAAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * ** * * * **
15505453 CGCAAGTTGCGGCCGCACATGCTGGGCTCGATCATGTGCTAGTGCCACATTTTTCTTAATCGGGG
66 CG-AGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
* * * * *
15505518 CGCCATCACCGGAGCA-TCGCCAGAGAACTTGACCGACGGTATTGGGGTTTCGGTGATCAGGGGG
130 CACCATC-CTGGAGCATTCG---GAGAACCTGACCGACGGCATTGGGGTTTCGGCGATC-GGGGG
* * *
15505582 GCCGGGGGAGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
190 GCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCC
15505647 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
253 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
15505712 TGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTTATA
318 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
15505777 CACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAATAAAAATACGAGGATCATGTCTACGA
382 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * **
15505842 AGTTTGGGGCTAAAACTCCTTCCGACAAAATTTTAAAAAAT-CTCAAACTACAAAAAGTTTCAAA
447 AGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAA
* * *
15505906 AATCCTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCAT
510 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
15505971 TGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
575 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * *
15506036 ACCTACCACCCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTCA-CCGACATAGT----GCCC
640 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-AGCCGGCGTAGTGCCCGCCC
* * * *
15506096 G--C-CCGCCTGCTCGTTTCTTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCA
704 GCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
15506158 GACC-GAACTGAGGGTTACGGCTGCAAGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCTG
769 GACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * * *
15506222 GCTTGAGCATCCCACCCCTCTGGCCGGTTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAG
833 GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * ***
15506286 GTATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCTAGTCTAAGATTGGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15506351 CAAGGGTTGCGGCAGCACATGCTGGACTCGGGCATGTGCTGGTG-CTGCATTTTTCTTTGTCGGG
66 CGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCTTCGTCGGG
* * *
15506415 GCACCAT-C---A-C---CGGAGAACCTGACCGACGACATTGGGGTTCCAGCGATCGGGGGGGCC
129 GCACCATCCTGGAGCATTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATC-GGGGGGCC
* * * **
15506472 AGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCC
193 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCC
* * * *
15506537 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTTAGATTTTATAGGTTTGCTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
15506602 GTAACCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
15506667 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATGTACCAAGTTTG
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
15506732 GGGCCGAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCAC-AAAAGTTTCAAAAATCGTG
453 GGGCC-AAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
* *
15506796 GAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGA
517 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
15506861 ATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCAAAACCCACCTACC
582 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
15506926 ACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-CCG
647 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCG
*
15506984 -CCGCTCGTTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
712 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * ** * *
15507048 TGAGGGATGTGGCAGCAAGATCAGCAGCATACAGAGGGGGACTCGACCGATCCCCGGCTTGCGCA
777 TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
* * * * *
15507113 TCCCTCCGCTATGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTTG
842 TCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
15507168 GCATACGGGGTTGATTGCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* ** * *
15507233 CAAGGGTTGCGATAGCACATGCTGGGCTCGGGGATGTGCTGGTG-CTGCATTTTTCTTC-ACTGG
66 CGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCTTCGTC-GG
* * * *
15507296 GGCACCATCATCGGAGCATTGTCGGAGAACCTGATCGGCGGCATTGGAG-TTC--CGAT-----G
128 GGCACCATCCT-GGAGCA-T-TCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGG
*** * * * * *
15507353 ATTGGGGGGTGTGCGCACATAATGTGCGATGGGTGTTGGTACTTGGTCCTTATATTGGCCCCTTA
190 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTA
* *
15507418 TCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
255 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
15507483 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCAC
320 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
15507548 TTCGAATTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATT
385 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * *
15507613 TTGGGGCCAAAACTCTTTTCGAAAATATTTTTAAAATATCCCGAACCGTAAAAAGTTTCAAAAAT
450 TTGGGGCCAAAA-TCCTTCCGAAAA-AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
15507678 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
513 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
15507743 ATGAATTTAGAAGCCATAAGAATGGCATTGGCATGTAGAAATATGAAGATGTGCTTAAACCCACC
578 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * *
15507808 TACCAACCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTTCCCGCCCGCCC
643 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCC
* * * * *
15507873 ACCCGCCCGTTCGTTTCATCAGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATC-GAA
708 -GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * * * ** * * *
15507937 CCAAACCGAGGGTTGTGGTAGCAGGATCGATAGCATGCATAGGGGGACCCGGTCGATCCCCGGCT
771 CCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
* * * *
15508002 TGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
836 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15508063 GCATACGGAGTTCATTCCCAGTCAAACCATATGAAGTTCATTCCTAGTCTAAGATCGGACCAAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * *
15508128 TGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGGT-TCCGCATTTTTCTTTGCCGGG
66 CGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGT-CGCATTTTTCTTCGTCGGG
* * ** * * * * * *
15508192 CCACCAT--T---GC---CGGAGAACCTAACCGGTGGCGTTGGGGTTCCAGCAATCGGGGGGGCT
129 GCACCATCCTGGAGCATTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGCCG
* * *
15508249 GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCC
194 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCC
* * *
15508314 TCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAG
259 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
15508379 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCG
324 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
15508444 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGG
389 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
15508509 GGACAAAACTTCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATCCTGA
454 GGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
* * *
15508574 AAAATAGAAAACGAGTTGTCTTGCCAAGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAA
518 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
15508639 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAGGTGCCTAAACCGACCTACCA
583 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
15508704 CCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCT-GACCGGCGTAGTGCGCTCCCGTCCACCT
648 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG-CCGGCGTAGTGCCCGCCCGCCCGCC-
*** * * * * * *
15508768 GGTAGCTCGTTTTGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCTAGTCTAAGAT-TGAATCGG
711 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG
* * * ** * * * * *
15508832 ACTAAGGGTTGCGACAGCTGGATCTACAGCACGCAGAGGGGTACCCGACTGATCCCCGGCATACG
775 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
** * * * * * * *
15508897 CATCATGA-CCCTTTGGCCGACTGAGCACCCGTAAGCTCGTTTCCTGGGTTCACTTAG
840 CATC-CCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
15508954 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C-----T-GGACC-GA-
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15508996 -G-GATTACGGCAGCACATG-TGGGCTCGAGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGG
66 CGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCTTCGTCGGGG
* * * *
15509057 CACCATCGTTGGAGCATCATCGGAGAACCTGACC-AGCGGTATTGGGGTTCCGGCAATCGGGGGG
130 CACCATC-CTGGAGCAT--TCGGAGAACCTGACCGA-CGGCATTGGGGTTTCGGCGATC-GGGGG
* *
15509121 GCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTAAGCCCTTATATTGGCCCCCTA
190 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTA
* *
15509186 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTG
255 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
15509251 -CTGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTAAAC
320 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
15509315 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGT
385 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
15509380 TTGGGGCAAAAACTCCATT-CAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT
450 TTGGGGCCAAAA-TCC-TTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
* * * * *
15509444 TATGAAAAAAAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTTT
513 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
15509509 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
578 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * ** *
15509574 TACCACCCTATCAATCCATGACTTGCGCATCCCGTCTCTCTGGCCTACGTAGTGCCCGCCTGCCC
643 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCC
* * * *
15509639 GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAATTTGAGATCAGAC
708 G-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * * *
15509704 CGGACTGAAGTTTGCGGCAGCAGGATTGGCAGCACACAGAGAGGGACCCGGTCGAACCCCGACTT
772 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTT
* * * * * *
15509769 GCGCATCCCACCCCTCTGGTCGGCTGAGCACCCGTACACTCATTTCGTGGGTTGACTTTG
837 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
15509829 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A--C------CGGACC-GA-
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
** * *
15509871 -G-GGTTGCGATAGCACATGCTGGAG-TCAGGCATGTGCTGGTGTCGCATTTTTCTTC-CCTGGG
66 CGAGGTTGCGGCAGCACATGCTGG-GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-GGG
* * * * * *
15509932 GCACCATCGTCGGAGCA-TCGCCGAGAACCTGACCGGCGGCGTTAGGGTTCCGACGATCGGGAGG
129 GCACCATCCT-GGAGCATTCG--GAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGG-GG
* * *
15509996 G-CAGGGGGTGT-CTGCACATGATGTGCGATGGGTGTTGGTACTCGGCCCTTATATTGGCCCCCT
190 GCCGGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCT
* *
15510059 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGCTTGCT
254 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
15510124 GCCTGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
319 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
15510189 CTT-GAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACGTCCACCAAG
384 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
15510253 TTTGGGGCCAACACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGGACCGTAAAAAGTTTCAAAAA
449 TTTGGGGCCAA-AATCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAA
* **
15510317 TCGTGAAAAATAGAAAACGAGTCAACTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
512 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
15510382 TATGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGGAGATGTGCCTAAACCCAC
577 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * * * *
15510447 CAACCACCCTATCGATCCACGACTTGCACATCCTGTCTCTCTCGCCGGCATAGTGGCCACCCGCC
642 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCC
** * * *
15510512 CGCCCGCCCGCTTATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGA
707 CG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
15510577 TCAGA-TCGAGAGTTGCAGC-GCCAGGATCAGCAGCATGCAGAGGGGGACCCGGCTGATCCCTGA
771 CCAGACT-GAGGGTTGCGGCAG-CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGG
* * * * *
15510640 CTTGCGCATCCCGCCCCTTTGGCCGACTGAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTAG
834 CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15510703 GCATACGGAGTTCATTCCCAGTCTAAGCATACTG-ACTTCATTCCTAGTCTAGGATTGGACTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * ** *
15510767 CTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGG
65 CCGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGG
* * * *
15510832 GCACCATCATCGGTGCATCGCTGGAGAACCTGATC-AGCGGCATTGGGG-TTC--CGAT-----G
129 GCACCATCCT-GGAGCAT-TC-GGAGAACCTGACCGA-CGGCATTGGGGTTTCGGCGATCGGGGG
** * *
15510888 ATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGATACTCA-GCCCTTATATTGGCCCCCT
190 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-AGGCCCTTATATTGGCCCCCT
15510952 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
254 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
15511016 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
319 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
15511081 CTTCGAGTTTTTGGTTGAATTTTTTTGTGCGTGCCAA-AAAAATTACAAGGATCACGTCTACCAA
384 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAA
* * * * *
15511145 GTTTGGGGCTAAAAATCCTTCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTGAAAAA
448 GTTTGGGGC-CAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAA
*
15511210 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTG
512 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
15511275 TATGAATTTACAAGCCACAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
577 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
15511340 CTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCACCCG--
642 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCC
* *
15511403 C-CTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
707 CGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * *
15511467 CAGACCGAAGGTTGCGGAAGCAAGATTGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTT
772 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTT
* * * *
15511532 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTGG
837 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
15511592 GCATACGGAGTTCATTCCCAGTCTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
15511657 CGAGGGTTGCGGCAGCA
66 CGA-GGTTGCGGCAGCA
15511674 GGATCAGCAG
Statistics
Matches: 6223, Mismatches: 806, Indels: 321
0.85 0.11 0.04
Matches are distributed among these distances:
863 1 0.00
864 40 0.01
865 14 0.00
867 2 0.00
869 1 0.00
870 7 0.00
871 1 0.00
873 9 0.00
874 581 0.09
875 671 0.11
876 179 0.03
877 3 0.00
878 1 0.00
881 1 0.00
882 274 0.04
883 194 0.03
884 395 0.06
885 170 0.03
886 187 0.03
887 45 0.01
888 2 0.00
889 232 0.04
890 17 0.00
891 425 0.07
892 443 0.07
893 385 0.06
894 8 0.00
895 273 0.04
896 5 0.00
897 3 0.00
898 269 0.04
899 3 0.00
900 72 0.01
901 23 0.00
902 334 0.05
903 480 0.08
904 171 0.03
905 234 0.04
906 67 0.01
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
ACCATCCTGGAGCATTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC
ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15510742 original size:26 final size:26
Alignment explanation
Indices: 15510703--15510753 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15510693 GTTGACTTAG
*
15510703 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
* *
15510729 GCATACTGACTTCATTCCTAGTCTA
1 GCATACGGACTTCATTCCCAGTCTA
15510754 GGATTGGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:15511628 original size:26 final size:26
Alignment explanation
Indices: 15511592--15511642 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15511582 GTTGACTTGG
15511592 GCATACGGAGTTCATTCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
15511618 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15511643 AGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:15511745 original size:185 final size:184
Alignment explanation
Indices: 15511433--15511857 Score: 643
Period size: 185 Copynumber: 2.3 Consensus size: 184
15511423 GTTGGCTTAG
* * * ** *
15511433 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGAAGCAAGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCAGCA
* * * *
15511498 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
66 GCACACAGAGGGGGACCCAACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCAC
* * * *
15511563 TCGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAT
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATT-CCAGTCTAA
* *
15511618 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCAGCA
* * * *
15511683 GCACATAGAGGGGGACCCAACCAATCCTCGGCTTACGCATCTCGCCGCTCTGGCCGACTGAGCAC
66 GCACACAGAGGGGGACCCAACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCAC
* *
15511748 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGCTCATTCTAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCAGTCTAA
15511802 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
15511858 CATGCTACGC
Statistics
Matches: 217, Mismatches: 23, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
184 62 0.29
185 155 0.71
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCAGCA
GCACACAGAGGGGGACCCAACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCAGTCTAA
Found at i:15511811 original size:25 final size:26
Alignment explanation
Indices: 15511777--15511828 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15511767 GTTGACTTAG
*
15511777 GCATACGGAGCTCATT-CTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
15511802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
15511828 G
1 G
15511829 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:15514005 original size:26 final size:26
Alignment explanation
Indices: 15513969--15514019 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15513959 TGACTTAGGG
*
15513969 ATACATAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
15513995 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15514020 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:15514904 original size:26 final size:26
Alignment explanation
Indices: 15514868--15514920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15514858 GTTGACTTAG
15514868 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15514894 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15514920 G
1 G
15514921 ACCGGATCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15515659 original size:905 final size:895
Alignment explanation
Indices: 15513672--15515660 Score: 2577
Period size: 901 Copynumber: 2.2 Consensus size: 895
15513662 CTCCTTTAGA
* * *
15513672 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCC
1 AAAAATGGCATT-G-ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** *
15513737 ACAGCTTACGCATCCCGCCTCTCTGGCCGGCGTA--G--TG-CCCGCCCGTCCGCTCGTTTCGTC
64 ACAGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCTGCCCCCCCCGTCCGCTCGTTTCGTC
* *
15513797 GGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGACAG
129 GGTTGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAA
* *
15513862 CAGGATCAGCAGCACATAGAGAGGAACCCGGTCGATCCTCGACTTGCGCATCCCACCCCTCTGGC
193 CAGGATCAGCAACACATAGAGAGGAACCCGGTCGATCCTCGACTTACGCATCCCACCCCTCTGGC
* * * * * *
15513927 TGGCTGAGCGCCCGCATGCTCATTTCGTAGGTTGACTTAGGGATACATAGTTCATTCCCAGTCTA
258 CGACTGAGCGCCCGCACGCTCATTTCGGAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* *
15513992 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAACACATGTTGG
323 AGCATACAGAGTTCATTCCCAGTCTAAGACCGGACAGGACCGAGGGTTGCGGCAACACATGCTGG
* * *
15514057 GCATGGGCATGTGGTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGAG
388 GCATGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGAG
* * * *
15514122 AACCTGACCGATAGCAATGGGGTTTCGACGATCGAGGGGGCCGGGGGTTGTGTGCACATGATGTA
453 AACCTGACCGACAGCAATAGGGTTTCGACAATCGAGGGGGCCGGGGGTGGTGTGCACATGATGTA
* **
15514187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTCAC
518 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * ***
15514252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCATTAGTTGTTAAAGTGTCTGAAAT
583 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
*
15514317 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCAAGTTTTTAGCTGAATTCTTTTC
648 GGAGACACTTTTTTCAAATGATCACAAAATCTTGAACACTTCAAGTTTTTAGCTGAATTCTTTTC
*
15514382 CATGCCAACAAAAATACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAAT
713 CATGCCAACAAAAACACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAAT
* * *
15514447 TTTAAAAAATCAGGAACTGCAAAAGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
778 TTTAAAAAATCAGGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
* * * **
15514512 CATGAAACTTCACGTGAAGGCTTAAGGGATCGTTATATGGATTTACAAGTGAT
843 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAT
* **
15514565 AAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATTCTATCGATCC
1 AAAAATGGCATTGACGT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
15514630 ACGGCTTGCGCATCCCGTCTT-TCTGACCGACGTAGTGCCCGCCCGCTCGCC-TACCTGCTCGTT
64 ACAGCTTGCGCATCCCGT-TTCTCTGGCCGGCGTAGTGCCTGCCC-C-CCCCGT-CC-GCTCGTT
* * *** *
15514693 TCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTAC
124 TCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTAC
* * * * **
15514758 -AGCAACTGGATCGGCAACACGTAGAGGAGG-ACCCGGTCGATCCTCGGCTTACGCATCCTGCCC
188 GA-CAACAGGATCAGCAACACATAGA-GAGGAACCCGGTCGATCCTCGACTTACGCATCCCACCC
* * * * *
15514821 CTCTGGCCGACTGAGTGCCGGCACGCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCC
251 CTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGGAGGTTGACTTAGGCATACAGAGTTCATTCC
** * *
15514886 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCGGATC-TGACCGAGGGTTGCGGCAGCA
316 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGACCGGA-CAGGACCGAGGGTTGCGGCAACA
* * *** * *
15514950 CATGCTGGGC-TCGGGCATGTGCTGGTGCCATATTTTTTTTCGTTGGGGCACCGTCGTCGGAGCA
380 CATGCTGGGCAT-GGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCA
** * * * *
15515014 TCGTCGGAGAACCTGACCGACAGCATTAGGG-TTCTGGCAATCGGGGGGGTCGGGGG-GGTGTGC
444 TCACCGGAGAACCTGACCGACAGCAATAGGGTTTC-GACAATCGAGGGGGCCGGGGGTGGTGTGC
** *
15515077 ACCCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACC
508 A--CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
15515142 TCAAGAACTCAGCCCCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTA
571 TCAAGAACTCA-CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTA
* * * * *
15515207 AAGTGTCTGAAGTGGGGACACTTTTTTTAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAG
635 AAGTGTCTGAAATGGAGACACTTTTTTCAAATGATCACAAAATCTTGAACACTTCAAGTTTTTAG
* * * * * * *
15515272 CTGAATTTTTTTGTGCATGCCAACAAAAACACATGGTTGACGTCTTCCAAGTTTGTGGCCAAAAG
700 CTGAA-TTCTTT-TCCATGCCAACAAAAACACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAAC
* ** * **
15515337 TCCT-TTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGA
763 TCCTCCT-GAAAAAATTTTAAAAAATCAGGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGA
* * * *
15515401 AAATGAGTCGTCTTGCCATGAAACTTCACTTGAAGGGTTAAGGGACCATTGTATGAATTTACAAG
827 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAG
15515466 CCAT
892 CCAT
15515470 AAAAATGGCATTGTTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
1 AAAAATGGCATTG--ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
15515535 ACAGCTTGCGCATCTCGTTTCTCTGGCCGGCGTAGTGCCTGCCCACCCATCCGTCCGCTCCTTTC
64 ACAGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCTGCCC-CCC--CCGTCCGCTCGTTTC
15515600 G-CTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
126 GTC-GGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
15515661 GTGGTAGCAA
Statistics
Matches: 934, Mismatches: 131, Indels: 50
0.84 0.12 0.04
Matches are distributed among these distances:
891 1 0.00
892 1 0.00
893 81 0.09
894 1 0.00
895 1 0.00
897 1 0.00
898 2 0.00
899 2 0.00
900 16 0.02
901 315 0.34
902 73 0.08
903 110 0.12
904 10 0.01
905 312 0.33
906 4 0.00
907 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
AAAAATGGCATTGACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
AGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCTGCCCCCCCCGTCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAACAG
GATCAGCAACACATAGAGAGGAACCCGGTCGATCCTCGACTTACGCATCCCACCCCTCTGGCCGA
CTGAGCGCCCGCACGCTCATTTCGGAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGACCGGACAGGACCGAGGGTTGCGGCAACACATGCTGGGCA
TGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGAGAAC
CTGACCGACAGCAATAGGGTTTCGACAATCGAGGGGGCCGGGGGTGGTGTGCACATGATGTACGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGA
GACACTTTTTTCAAATGATCACAAAATCTTGAACACTTCAAGTTTTTAGCTGAATTCTTTTCCAT
GCCAACAAAAACACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAATTTT
AAAAAATCAGGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAT
Found at i:15515689 original size:905 final size:896
Alignment explanation
Indices: 15513672--15515705 Score: 2597
Period size: 905 Copynumber: 2.3 Consensus size: 896
15513662 CTCCTTTAGA
* * *
15513672 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCC
1 AAAAATGGCATT-G-ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** *
15513737 ACAGCTTACGCATCCCGCCTCTCTGGCCGGCGTA--G--TG-CCCGCCCGTCCGCTCGTTTCGTC
64 ACAGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCTGCCCCCCCCGTCCGCTCGTTTCGTC
* *
15513797 GGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGACAG
129 GGTTGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAG
* * *
15513862 CAGGATCAGCAGCACATAGA-GAGGAACCCGGTCGATCCTCGACTTGCGCATCCCACCCCTCTGG
193 CAGGATCAGCAACACGTAGAGGAGGAACCCGGTCGATCCTCGACTTACGCATCCCACCCCTCTGG
* * * * * *
15513926 CTGGCTGAGCGCCCGCATGCTCATTTCGTAGGTTGACTTAGGGATACATAGTTCATTCCCAGTCT
258 CCGACTGAGCGCCCGCACGCTCATTTCGGAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* *
15513991 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAACACATGTTG
323 AAGCATACAGAGTTCATTCCCAGTCTAAGACCGGACAGGACCGAGGGTTGCGGCAACACATGCTG
* * *
15514056 GGCATGGGCATGTGGTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGA
388 GGCATGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGA
* * * *
15514121 GAACCTGACCGATAGCAATGGGGTTTCGACGATCGAGGGGGCCGGGGGTTGTGTGCACATGATGT
453 GAACCTGACCGACAGCAATAGGGTTTCGACAATCGAGGGGGCCGGGGGTGGTGTGCACATGATGT
* **
15514186 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTCA
518 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * ***
15514251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCATTAGTTGTTAAAGTGTCTGAAA
583 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
*
15514316 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCAAGTTTTTAGCTGAATTCTTTT
648 TGGAGACACTTTTTTCAAATGATCACAAAATCTTGAACACTTCAAGTTTTTAGCTGAATTCTTTT
*
15514381 CCATGCCAACAAAAATACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAA
713 CCATGCCAACAAAAACACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAA
* * *
15514446 TTTTAAAAAATCAGGAACTGCAAAAGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
778 TTTTAAAAAATCAGGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
* * * **
15514511 CCATGAAACTTCACGTGAAGGCTTAAGGGATCGTTATATGGATTTACAAGTGAT
843 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAT
* **
15514565 AAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATTCTATCGATCC
1 AAAAATGGCATTGACGT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
15514630 ACGGCTTGCGCATCCCGTCTT-TCTGACCGACGTAGTGCCCGCCCGCTCGCC-TACCTGCTCGTT
64 ACAGCTTGCGCATCCCGT-TTCTCTGGCCGGCGTAGTGCCTGCCC-C-CCCCGT-CC-GCTCGTT
* * *** *
15514693 TCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTAC
124 TCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTAC
* * * * * **
15514758 AGCAACTGGATCGGCAACACGTAGAGGAGG-ACCCGGTCGATCCTCGGCTTACGCATCCTGCCCC
188 GGCAGCAGGATCAGCAACACGTAGAGGAGGAACCCGGTCGATCCTCGACTTACGCATCCCACCCC
* * * * *
15514822 TCTGGCCGACTGAGTGCCGGCACGCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCC
253 TCTGGCCGACTGAGCGCCCGCACGCTCATTTCGGAGGTTGACTTAGGCATACAGAGTTCATTCCC
** * *
15514887 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCGGATC-TGACCGAGGGTTGCGGCAGCAC
318 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGACCGGA-CAGGACCGAGGGTTGCGGCAACAC
* * *** * *
15514951 ATGCTGGGC-TCGGGCATGTGCTGGTGCCATATTTTTTTTCGTTGGGGCACCGTCGTCGGAGCAT
382 ATGCTGGGCAT-GGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCAT
** * * * *
15515015 CGTCGGAGAACCTGACCGACAGCATTAGGG-TTCTGGCAATCGGGGGGGTCGGGGG-GGTGTGCA
446 CACCGGAGAACCTGACCGACAGCAATAGGGTTTC-GACAATCGAGGGGGCCGGGGGTGGTGTGCA
** *
15515078 CCCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCT
510 --CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
15515143 CAAGAACTCAGCCCCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
573 CAAGAACTCA-CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
* * * * *
15515208 AGTGTCTGAAGTGGGGACACTTTTTTTAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGC
637 AGTGTCTGAAATGGAGACACTTTTTTCAAATGATCACAAAATCTTGAACACTTCAAGTTTTTAGC
* * * * * * *
15515273 TGAATTTTTTTGTGCATGCCAACAAAAACACATGGTTGACGTCTTCCAAGTTTGTGGCCAAAAGT
702 TGAA-TTCTTT-TCCATGCCAACAAAAACACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * **
15515338 CCT-TTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAA
765 CCTCCT-GAAAAAATTTTAAAAAATCAGGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAA
* * * *
15515402 AATGAGTCGTCTTGCCATGAAACTTCACTTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGC
829 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGC
15515467 CAT
894 CAT
15515470 AAAAATGGCATTGTTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
1 AAAAATGGCATTG--ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
15515535 ACAGCTTGCGCATCTCGTTTCTCTGGCCGGCGTAGTGCCTGCCCACCCATCCGTCCGCTCCTTTC
64 ACAGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCTGCCC-CCC--CCGTCCGCTCGTTTC
**
15515600 G-CTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTG
126 GTC-GGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACG
* * * * *
15515664 GTAGCAAGATTAGCAACATGTAGAGG-GGAACCCGATCGATCC
189 GCAGCAGGATCAGCAACACGTAGAGGAGGAACCCGGTCGATCC
15515706 CCGTCGGGGG
Statistics
Matches: 966, Mismatches: 144, Indels: 50
0.83 0.12 0.04
Matches are distributed among these distances:
891 1 0.00
892 1 0.00
893 81 0.08
894 1 0.00
895 1 0.00
897 1 0.00
898 2 0.00
899 2 0.00
900 15 0.02
901 315 0.33
902 73 0.08
903 110 0.11
904 12 0.01
905 343 0.36
906 4 0.00
907 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
AAAAATGGCATTGACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
AGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCTGCCCCCCCCGTCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAG
GATCAGCAACACGTAGAGGAGGAACCCGGTCGATCCTCGACTTACGCATCCCACCCCTCTGGCCG
ACTGAGCGCCCGCACGCTCATTTCGGAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGACCGGACAGGACCGAGGGTTGCGGCAACACATGCTGGGC
ATGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGAGAA
CCTGACCGACAGCAATAGGGTTTCGACAATCGAGGGGGCCGGGGGTGGTGTGCACATGATGTACG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
AGACACTTTTTTCAAATGATCACAAAATCTTGAACACTTCAAGTTTTTAGCTGAATTCTTTTCCA
TGCCAACAAAAACACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAATTT
TAAAAAATCAGGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAT
Found at i:15518436 original size:871 final size:873
Alignment explanation
Indices: 15515712--15519841 Score: 5446
Period size: 879 Copynumber: 4.7 Consensus size: 873
15515702 ATCCCCGTCG
* * * *
15515712 GGGGGGTGTGTGCACAGGATGTGCGATGGGTG-TGGGTACTTCGCCCTTATATTGGCCTCCTATC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
15515776 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCC
65 CCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
15515841 AGTAGCTATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
15515906 CAAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAATGATTATGTCTACCAAGTTT
195 CGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
* * * * * * ** *
15515971 GAGGCCAAAACTCCTTCTGAAAAAATTTTGAAAAATCACAAACCACAAAAAGTTTTGAAAATCTT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
*
15516036 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** ** * *
15516101 AATTGGCAAGCCATAAAAATGGTTTTGGCACGTAGAAATATGAAAATGTGCCTAAACCCACCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
15516166 CACCCAATCGATCGATGGCTTGCACATCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
454 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--
* * * * ***
15516231 CTCCCACTCGTTTCGTTGGTTAGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGG
517 ---CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * *
15516296 ACCTAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCAACCGATCCCCGGCTTGCA
579 ACCGAGGGTTGCAGTAGCAGGATCGACAGCACATAAAGGGGGACCCGACCGATCCCCGACTTGCG
* * * * * *
15516361 TATCCCATCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGG
644 CATCCCACCCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCGCGAGTTGACTTAGGCATACGG
* * * * * * * *
15516426 AGTTCATTTCCAGTCTAAGAGCAGA-CCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
709 AGTTCATTCCCAGTCTAAGATCGGATCAGAACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* * * ** * *
15516490 ATGTGCTGGTGCCACATTTTTCTTCGC-CAGGCCACCAACGTTGGAGTATCACCGGAAAACCTGA
774 ATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
*
15516554 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGTC
839 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * *
15516589 GAAGGGGGTGTGCACACATGATGTACGATGAGTGTTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 G--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
**
15516654 CCCTCATCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
64 CCCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
** *
15516719 CAGTAGCCATTAATTTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACT
129 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * **
15516784 TCGAGTTTTTGGCTGAAATTTATTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
194 TCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
* * * * *
15516849 TGGGGCCAAGACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTGAAAAATCA
258 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * *
15516914 TGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTGT
323 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** * *
15516979 GAATTTACAAGCCATAAAACTGGCATTGGCACATAGAAATATGAAGTTATGCCTAAACCCACCTA
388 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
15517044 CCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCTGCCCGCACGC
453 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-C
**
15517109 CTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
515 C-GCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * ** * * *
15517174 GACCAAGGGTTGCGGTAGCAGGATCTACAGCACACAGAA-AAGGACTCGGCCGATCCCCGGCTTG
578 GACCGAGGGTTGCAGTAGCAGGATCGACAGCACATA-AAGGGGGACCCGACCGATCCCCGACTTG
* * * *
15517238 CGCATCCCACCTCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATAC
642 CGCATCCCACCCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCGCGAGTTGACTTAGGCATAC
* ** * * *
15517303 GGAGTTCATTCCCAGTATAAGATCTTATC-GAATTGAGGGTTGTGGCAGCACATGCTGGGCTCGG
707 GGAGTTCATTCCCAGTCTAAGATCGGATCAGAACTGAGGGTTGCGGCAGCACATGCTGGGCTCAG
** *
15517367 GCATGTGCTGGTGCCGTATTTTTCTTCG-TCGGGGCACCATCGCCGGAGCATCATCGGAGAACCT
772 GCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCT
15517431 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
837 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
15517468 AGGGTGGTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
15517533 CCTCATCAAACCTTGAGAACTTACTCCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
15517598 AGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
15517663 CGAGTTTTTAGCTGAATTCTTTTGTGCATGCC-ACAAAAAT-GAAGGATCATGTCTACCAAGTTT
195 CGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
* ** * *
15517726 GGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAATTTTCAAAAATCGT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
*
15517791 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
15517856 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
15517921 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCC
454 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * *
15517986 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGA
519 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * *
15518051 GGGTTAC-GATAGCAGGATTGGCAGCACATAAAGGGGGACCCGACCGATCCCCGACTTGCGCATC
584 GGGTTGCAG-TAGCAGGATCGACAGCACATAAAGGGGGACCCGACCGATCCCCGACTTGCGCATC
* * * * * *
15518115 CCGCCCCTCTGACCGGCTAAACGACCACACGCTCATTTCGCGAGTTGACTTAGGCATACGGAGTT
648 CCACCCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCGCGAGTTGACTTAGGCATACGGAGTT
15518180 CATTCCCAGTCTAAGATCGGATCAG-ACTGAGGGTTGCGGCAGCATC-T-CTGGGCTCAGGCATG
713 CATTCCCAGTCTAAGATCGGATCAGAACTGAGGGTTGCGGCAGCA-CATGCTGGGCTCAGGCATG
* * * * * *
15518242 TGCTGGTACCGCATTTTTCTTCGCT-GGGGTAGCATCGTCGGAGCATCGCCGGAGAACCTGACCG
777 TGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCG
*
15518306 ACGGCATTAGGGTTCCGACGATCGGGGGGGGCC
842 ACGGCATTGGGGTTCCGACGATC-GGGGGGGCC
* * * *
15518339 GGGGGGTTGTGTGCACATGATGTGCGATGGTTGCTGGGACTTGGCCCTTATATTGGCCCTCTATC
1 GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
15518404 CCTCATCAAACCTTGAGAACTCATAACCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
15518469 AGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAGCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
15518534 CGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTT
195 CGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
* * * *
15518599 GGGGCCAAAACTCTTTTCAAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTCAAAAATCAT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * * *
15518664 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGACGGCTTAAGGGACCGTTGTATG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * * *
15518729 AATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTACATAAACTCACCCAC
389 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
15518794 CACCCTATCGATCAACGGCTTCCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCC
454 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * * * *
15518859 CCTTCGTTTCGTCGATAGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACTG
519 GC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * **
15518924 AGGGTTGCAGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTAAGCATC
583 AGGGTTGCAGTAGCAGGATCGACAGCACATAAAGGGGGACCCGACCGATCCCCGACTTGCGCATC
* * ** * * *
15518989 CCGCCCTTCTGGCCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGCCTTAGGCATACGGAGTT
648 CCACCCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCGCGAGTTGACTTAGGCATACGGAGTT
*
15519054 CATTCCCAGTCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCTTACTGAACTGAGGGTTGCGA
713 CATTCCCAGTCT--------A-AG---A-T--C-G-----GATC--A--GAACTGAGGGTTGCGG
* * * * * * *
15519119 CGGCACTTGCTGGGCTCAGGCATTTGCTGGTGCCACTTTTTTCTTC-ATCGGGGCACCATCACCA
753 CAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGCCG
* * ** *
15519183 GAGCATCATCGGAGAACCTGATCGACGGCATTGGGGTTCC-AGCGATCAAGGGGGCT
818 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCC
*
15519239 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
15519304 CTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGTTGCCA
66 CTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
15519369 GTAGTCAGTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
15519434 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
*
15519499 GGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* *
15519564 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTAAAGGCTTAAGGGACCATTGTATGA
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
15519629 ATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
390 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
15519694 ACCCTATCGATCCACGGCTTACGTATCTCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCC
455 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCC
** * *
15519759 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAACATCAGACCGGA
516 GCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** *
15519824 CTAAGGGTTGCGGTAGCA
580 CCGAGGGTTGCAGTAGCA
15519842 CATGCTGAGC
Statistics
Matches: 2858, Mismatches: 333, Indels: 98
0.87 0.10 0.03
Matches are distributed among these distances:
870 99 0.03
871 411 0.14
872 13 0.00
873 261 0.09
874 176 0.06
875 1 0.00
876 252 0.09
877 12 0.00
878 203 0.07
879 753 0.26
880 6 0.00
881 1 0.00
882 3 0.00
883 3 0.00
886 1 0.00
887 1 0.00
889 1 0.00
890 1 0.00
895 4 0.00
897 1 0.00
899 455 0.16
900 33 0.01
901 84 0.03
903 82 0.03
904 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (873 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTGCAGTAGCAGGATCGACAGCACATAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCA
CCCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCGCGAGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGATCAGAACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCT
GGTGCCACATTTTTCTTCGCTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGG
CATTGGGGTTCCGACGATCGGGGGGGCC
Found at i:15519500 original size:899 final size:903
Alignment explanation
Indices: 15518175--15519839 Score: 2533
Period size: 899 Copynumber: 1.8 Consensus size: 903
15518165 TAGGCATACG
*
15518175 GAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCATCTCTGGGCTCAGGCA
1 GAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGACAGCATCTCTGGGCTCAGGCA
* * * ** * *
15518240 TGTGCTGGTACCGCATTTTTCTTCGCTGGGGTAGCATCGTCGGAGCATCGCCGGAGAACCTGACC
66 TGTGCTGGTACCACATTTTTCTTCGCTGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACC
** * *
15518305 GACGGCATTAGGGTTCCGACGATCGGGGGGGGCCGGGGGGTTGTGTGCACATGATGTGCGATGGT
131 GACGGCATTAGGGTTCCGACGATCGAAGGGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGGG
* * *
15518370 TGCTGGGACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCATAACCCCT
196 TGCTGGGACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCT
* *
15518435 TAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACA
261 TAAAGAGAATTGGAGATTTTACAGGTTTGCTGCCAGTAGCAAGTAAAGTGTCTAAAATGGGGACA
15518500 CTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
326 CTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
* * *
15518565 CAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAC-TCTTTTCAAAAAAATTTTA
391 CAAAAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTTC-TTCCAAAAAAATTTTA
15518629 AAAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
455 AAAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
* * * *
15518694 AAACTTCAGGTGACGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
520 AAACTTCAGGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCA
** * *
15518759 TGCAAAAATATGAAGATGTACATAAACTCACCCACCACCCTATCGATCAACGGCTTCCGCATCCC
585 CACAAAAATATGAAGATGTACATAAACCCACCCACCACCCTATCGATCAACGGCTTACGCATCCC
*
15518824 GTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCG-CC-CCT-TCGTTTCGTCGATAGGCTTAGGCA
650 GTCTCTCTAGCCGACGTAGTACCCGCCCGCCCGCCCGCCTCTCGTTTCGTCGATAGGCTTAGGCA
* * * *
15518886 TACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGTAGGATCGACAGCA
715 TACAGAGTTCATTCCCAGTCTAACATCAGACCAGACTAAGGGTTGCAGTAGTAGGATCGACAGCA
15518951 CGTAGAGGGGGACCCGATCGATCCCCGACTTAAGCATCCCGCCCTTCTGGCCGACTGAGTGCCCG
780 CGTAGAGGGGGACCCGATCGATCCCCGACTTAAGCATCCCGCCCTTCTGGCCGACTGAGTGCCCG
15519016 CACGCTCATTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACA
845 CACGCTCATTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACA
** * *
15519075 GAGTTCATTCCCAGTCTAAGATCTTA-CTGAACTGAGGGTTGCGACGGCA-CTTGCTGGGCTCAG
1 GAGTTCATTCCCAGTCTAAGATCGGATCAG-ACTGAGGGTTGCGACAGCATC-T-CTGGGCTCAG
* * * * *
15519138 GCATTTGCTGGTGCCACTTTTTTCTTC-ATCGGGGCACCATCACCAGAGCATCATCGGAGAACCT
63 GCATGTGCTGGTACCACATTTTTCTTCGCT-GGGGCACCATCACCAGAGCATCACCGGAGAACCT
* * *
15519202 GATCGACGGCATTGGGGTTCC-AGCGATC-AAGGGGGCTGGGGGG-TGTGCGCACATGATGTGCG
127 GACCGACGGCATTAGGGTTCCGA-CGATCGAAGGGGGCCGGGGGGTTGTGCGCACATGATGTGCG
* * *
15519264 ATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTACAC
191 ATGGGTGCTGGGACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAA
* * * *
15519329 CCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGTTGCCAGTAGTC-AGTAAAGTGTTTGAAATG
256 CCCCTTAAAGAGAATTGGAGATTTTACAGGTTTGCTGCCAGTAG-CAAGTAAAGTGTCTAAAATG
* *
15519393 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
* *
15519458 GCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAA
385 GCATGCCAAAAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAA
* *
15519523 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
450 TTTTAAAAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
*
15519588 CCATGAAACTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCAT
515 CCATGAAACTTCAGGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCAT
* * * * * *
15519653 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGT
580 TGGCACACAAAAATATGAAGATGTACATAAACCCACCCACCACCCTATCGATCAACGGCTTACGC
* * * *
15519718 ATCTCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
645 ATCCCGTCTCTCTAGCCGACGTAGTACCCGCCCGCCCGCCCGCCT-CTCGTTTCGTCGATAGGCT
* * *
15519783 TAGGCATATAGAGTTCATTCCCAGTCTAACATCAGACCGGACTAAGGGTTGCGGTAG
709 TAGGCATACAGAGTTCATTCCCAGTCTAACATCAGACCAGACTAAGGGTTGCAGTAG
15519840 CACATGCTGA
Statistics
Matches: 682, Mismatches: 72, Indels: 19
0.88 0.09 0.02
Matches are distributed among these distances:
899 468 0.69
900 61 0.09
901 87 0.13
903 66 0.10
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (903 bp):
GAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGACAGCATCTCTGGGCTCAGGCA
TGTGCTGGTACCACATTTTTCTTCGCTGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACC
GACGGCATTAGGGTTCCGACGATCGAAGGGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGGG
TGCTGGGACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCT
TAAAGAGAATTGGAGATTTTACAGGTTTGCTGCCAGTAGCAAGTAAAGTGTCTAAAATGGGGACA
CTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
CAAAAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAA
AAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
AACTTCAGGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCAC
ACAAAAATATGAAGATGTACATAAACCCACCCACCACCCTATCGATCAACGGCTTACGCATCCCG
TCTCTCTAGCCGACGTAGTACCCGCCCGCCCGCCCGCCTCTCGTTTCGTCGATAGGCTTAGGCAT
ACAGAGTTCATTCCCAGTCTAACATCAGACCAGACTAAGGGTTGCAGTAGTAGGATCGACAGCAC
GTAGAGGGGGACCCGATCGATCCCCGACTTAAGCATCCCGCCCTTCTGGCCGACTGAGTGCCCGC
ACGCTCATTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACA
Found at i:15520469 original size:715 final size:717
Alignment explanation
Indices: 15519072--15520556 Score: 2244
Period size: 715 Copynumber: 2.1 Consensus size: 717
15519062 GTCTAAGCAC
** * * ** * *
15519072 ACAGAGTTCATTCCCAGTCTAAGATCTTACTGAACTGAGGGTTGCGACGGCACTTGCTGGGCTCA
1 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGCACATGCTGAGCTCA
* * * * *
15519137 GGCATTTGCTGGTGCCACTTTTTTCTTCATCGGGGCACCATCACCAGAGCATCATCGGAGAACCT
66 GGCATGTGCTGGTGCCACATTTTTCTTCACCGGGACACCATCACCAGAGCATCATCGAAGAACCT
* * * * **
15519202 GATCGACGGCATTGGGGTTCCAGCGATCAAGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATG
131 AACCGACAGCATTGGGGTTCCAGCGATCAAGGGGGCCGACGGGTGTGCGCACATGATGTGCGATG
** *
15519267 GGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCC
196 GGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* * * *
15519332 CTTAAAGAGCATTGGAGATTTTACAGGTTTGTTGCCAGTAGTCAGTAAAGTGTTTGAAATGGGGA
261 CTTAAAGAGCATTGGAGATTTTACAGATTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAATGGGGA
15519397 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
15519462 GCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTT
391 GCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*
15519527 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
456 AAAAAATCCCGAACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
15519592 GAAACTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
521 GAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
* * *
15519657 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTATCT
586 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACCTATCC
* * * *
15519722 CGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCGCCTGC-TCGTTTCGTCGGTTGGCTTAG
651 CGTCCCTCTGGCCGACGTAATACCCACCCGCCCGCCCG-CT-CATCGTTTCGTCGGTTAGCTTAG
15519786 GCAT
714 GCAT
* * * * *
15519790 ATAGAGTTCATTCCCAGTCTAACATCAGACCGGACTAAGGGTTGCGGTAGCACATGCTGAGCTCG
1 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGCACATGCTGAGCTCA
* * ** * *
15519855 GGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGACACCATCGTCGGAGCATCGTCGAAGAACCT
66 GGCATGTGCTGGTGCCACATTTTTCTTCACCGGGACACCATCACCAGAGCATCATCGAAGAACCT
* * *
15519920 AACCGACAGCATTGGGGTTTCGGCGATC-GGGGGGCCGACGGGTGTGCGCACATGATGTGCGATG
131 AACCGACAGCATTGGGGTTCCAGCGATCAAGGGGGCCGACGGGTGTGCGCACATGATGTGCGATG
* *
15519984 GGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACACCCC
196 GGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* *
15520049 CTTAAAGAGCATTTGAGATTTTACA-ATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
261 CTTAAAGAGCATTGGAGATTTTACAGATTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAATGGGGA
15520113 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
15520178 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCC-AAAAACATTT
391 GCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTT
* *
15520241 TAAAAAATCCTGAACTGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
455 TAAAAAATCCCGAACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
15520306 TGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
520 TGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGG
** * *
15520371 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCCTGTC
585 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACCTATC
* * * * *
15520436 CCGTCCCTCTGGTCGGCGTAATGCCTACCCGCCCGCTCGCTCATTCGTTTCGTCGGTTAGCTTAG
650 CCGTCCCTCTGGCCGACGTAATACCCACCCGCCCGCCCGCTCA-TCGTTTCGTCGGTTAGCTTAG
15520501 GCAT
714 GCAT
* *
15520505 ACGGTGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGATAGCA
1 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGATAGCA
15520557 GGATCGGTAG
Statistics
Matches: 688, Mismatches: 75, Indels: 11
0.89 0.10 0.01
Matches are distributed among these distances:
713 1 0.00
714 8 0.01
715 300 0.44
716 134 0.19
717 116 0.17
718 129 0.19
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (717 bp):
ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGCACATGCTGAGCTCA
GGCATGTGCTGGTGCCACATTTTTCTTCACCGGGACACCATCACCAGAGCATCATCGAAGAACCT
AACCGACAGCATTGGGGTTCCAGCGATCAAGGGGGCCGACGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
CTTAAAGAGCATTGGAGATTTTACAGATTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACCTATCC
CGTCCCTCTGGCCGACGTAATACCCACCCGCCCGCCCGCTCATCGTTTCGTCGGTTAGCTTAGGC
AT
Found at i:15520688 original size:26 final size:26
Alignment explanation
Indices: 15520659--15520711 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15520649 GTTGACTTAG
*
15520659 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15520685 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15520711 G
1 G
15520712 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15521347 original size:26 final size:26
Alignment explanation
Indices: 15521296--15521351 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15521286 TGGGTTGACT
*
15521296 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACGGAGTTCATTTCAAGTC
*
15521322 TAAGCATATGGAGTTCA-TTCAAAGTC
1 TAAGCATACGGAGTTCATTTC-AAGTC
15521348 TAAG
1 TAAG
15521352 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 3 0.11
26 24 0.89
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTTCAAGTC
Found at i:15522207 original size:26 final size:26
Alignment explanation
Indices: 15522178--15522230 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15522168 GTTGACTTAG
*
15522178 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15522204 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15522230 G
1 G
15522231 ATCCGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15523337 original size:890 final size:890
Alignment explanation
Indices: 15521117--15524947 Score: 4491
Period size: 890 Copynumber: 4.3 Consensus size: 890
15521107 GGCCAAAACT
* * *
15521117 GCTCGTTTCGTCAGTCGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGA
1 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGA
* * *
15521182 GGGTTGCAATAGCAGGATC-GACAGCATGCAGAGGGAGACCAGGCCGATCCCCAGCTTGCGCATC
66 GGGTTGCGATAGCAGGATCAG-CAGCACGCAGAGGGGGACCA-GCCGATCCCCAGCTTGCGCA-C
* * * * * ** * *
15521246 CCACCACTCTGGCAGACTGAGCGCTTGCACAATCATTTCGTGGGTTGACTTAAGCATACGGAGTT
128 CCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * ** * *
15521311 CATTTCCAGTCTAAGCATATGGAGTTCATTCAAAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
193 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGG
15521376 CAGCACATGCT-GG--T--GC-----C-A------CATTTTTCTTCATCGGGGCACCATCGCCGG
258 CAGCACATGCTGGGCTTGAGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGG
* *
15521424 AGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCC-AGCGATCGGTGGGGCCGGGGGGTAT
323 AGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGA-CGATCGG-GGGGCCGGGGGGTGT
* ** * *
15521488 GCGCACATGATGTGCGAGGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAA
386 GCGCACATGATGTGCGATGGGTGCCGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
15521553 CCT-GAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATT
451 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
* * *
15521616 AAAATGTCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
516 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
15521681 GCTGAAGTTTTTTATGCATGCCAACAAAAATACAAGGATCACATATACCAAGTTTGGAGCCAAAA
581 GCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * *
15521746 CTCCTTCCG-AGAAATTTT-ACAAATCTTGAACCGTAAAGAGTTTCAAAAATTGTGAAAAATAGA
646 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
15521809 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
711 AAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
15521874 CCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCT
776 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
15521939 ATCTACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCC
841 ATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-CGC-CCCGCCC
* * * * *
15521991 GCCCCACTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAACCA
1 G-----CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCT
* * * * * * *
15522055 GACTGAGGGTTGTCG-TAGCAGGATCGGCAGCACGCACAAGGGGACCCGGTCGATCCCCGGCTTG
60 GACCGAGGGTTG-CGATAGCAGGATCAGCAGCACGCAGAGGGGGA-CCAGCCGATCCCCAGCTTG
* * * * * *
15522119 CGCATCCTGCCCCTCTGGCTGGCTGGGCGCCCGCACGCTCGTTCCGTTGGTTGACTTAGGCATAC
123 CGCA-CCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
15522184 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCCGACTGGATCGAGGG
187 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGG
* * * * * * *
15522249 TTGCAGTAGCACATGCTGGGCTTGAGCATGTGCTGGAGCCGTATTTCTCTTCACCGGGGCACCAT
252 TTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCAT
** * * * *
15522314 CGTTGGAGCATCGTCAGAGAACCTGACC-AGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGG
317 CGCCGGAGCATCGTCGGAGAACCTGACCGA-CAGCATTGGGGTTCCGACGATC-GGGGGGCCGGG
* *
15522378 GGGTGTGCGCACATGATGTGTGATTGGTG-CGACTACTTGGCCCTTATATTGGCCCCCTATCCCT
380 GGGTGTGCGCACATGATGTGCGATGGGTGCCG-CTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
15522442 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
444 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
*
15522507 AGCCATTAAAGTGTCTAAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
509 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
15522572 GTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAATTACAATGATCACGTCTACTAAGTTTGGG
574 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
15522637 GCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
639 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAA
* *
15522702 AAATAGAAAATGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAAT
704 AAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
15522767 TTACAAGCCAAAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAATCCACCTAACAC
769 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
15522832 CATATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT-G-CCCGCCC
834 CCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCCGCCC
* *
15522887 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTTACCGA
1 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGA
* * * **
15522952 GGGTTGTGACAGCAGGATCAGCAGCATGCAGAGGGGGACCTAGCCGATCCCCAGCTTGCTTACCC
66 GGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACC-AGCCGATCCCCAGCTTGCGCACCC
* * * * * * *
15523017 GCCCCTCTGGCCGGCTGAGCGCCCGCATGCTTGTTTGGTGGGTTAACTTTGGCATACAGAGTTCA
130 GCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * ** * * *
15523082 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAACATCGGACCAAATCGAAGGTTACGGTA
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
** ** *
15523147 GCACATGCTGGGCACGAGCATGTGCTAGTGTTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
260 GCACATGCTGGGCTTGAGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAG
* * * *
15523212 CATCG-CGGAGAACCTGACCGACAGCATTGGGGTTTCGGCAATCGGGGGGACTGGGGGGGTGTGC
325 CATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGG-C-CGGGGGGTGTGC
* * * * *
15523276 ACAAATGATGCGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACC
388 GCACATGATGTGCGATGGGTGCCGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * * *
15523341 TTGAGAACTCACACCCCTTTAAAGAGCGTTTGAGATTTTACAGGCTTGCTACCAATAGCCATTAA
453 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
* * *
15523406 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGC
518 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
** **
15523471 TGAATTTTTTTATGCATGCCAACAAAAATACGGGGATCGTGTCTACCAAGTTTGGGGCCAAGAA-
583 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AAC
* * * * *
15523535 TCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
647 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
15523600 AACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
712 AACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** *
15523665 CATAAAAATGGCATTGGCACACAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGA
777 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
15523730 TCCAC-AGCTTGCGCATTCTGTCTCTCTGGTCGACGTAGTGCTCGGCCGTCCGCCC
842 TCCACGA-CTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-TC-GCC--CCGCCC
*
15523785 GCTCGCACGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CTGG
1 GCT----CGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCT-G
* * * * * * *** * *
15523849 ATCAAGGGTTACGGTAGCAGGATTAGCACCACATGGAGGGGGACCCGACCGATCCCC-GACTTAC
61 ACCGAGGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACCAG-CCGATCCCCAG-CTTGC
* * * * * *
15523913 GCATCTCGCCCCTCTGCCCGACTGAGCGCCTGCACGCTCGGTTCATGGGTTGACTTAGACATACG
124 GCA-CCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
15523978 GAGTTCATTCCCAG--T---C-TA---AG---------A-T-T-AGATCGGA-C----CGAGGGT
188 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGT
* * * * * **
15524017 TGCGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACAGTTTTCTTGGTCGGGGCACCATC
253 TGCGGCAGCACATGCTGGGCTTGAGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATC
* * * * *
15524082 GTCGGAGCATCAT-GAGAGAACCTGGCCGACGGCATTGAGGTTCCGACGATCGGGGGGCCAGGGG
318 GCCGGAGCATCGTCG-GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCC-GGGG
* * *
15524146 CGGTGAGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATACTGGCCCCCTATCCCTC
381 -GGTGTGCGCACATGATGTGCGATGGGTGCCGCTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
15524211 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
445 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
* * * *
15524276 GCCGTTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTTGAG
510 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
15524340 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
575 TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
15524405 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTAAAAAAACGTGAAA
640 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* * *
15524470 AATAGAAAACGAGTCATCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGAACCATTGTATGAATT
705 AATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
15524535 TACAAGCCATGAAAATGGCATTGGCATGGAGAAACATGAAGATGTGCCTAAACCCACCTCCCACC
770 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
15524600 CTATCGATCCATGACTTAG-GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGC
835 CTATCGATCCACGACTT-GCGCATCCCGTCTCTCTGGCCGACGTAGT-------CG--C-CCCGC
15524664 CC
889 CC
* * ** *
15524666 GCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATTGGA-CTGGACCA
1 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCT-GACCG
** * * ** *** *
15524730 AGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCAATCGATCCTTGGCTTGCAGAAC
65 AGGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGA-CCAGCCGATCCCCAGCTTGC-GCAC
* * * * **
15524795 CCGCCCCTCTTGCCGGTTGAGCGCCTGCACGCTCGTTTCATGGTTTGACTTAGGTGTACGGAGTT
128 CCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
15524860 CATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCGGATCGGA-CAGAGGGTTACG
193 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCG
* * *
15524924 ACAGCAAATG-TAGGGCTCGAGCAT
257 GCAGCACATGCT-GGGCTTGAGCAT
15524948 TGGGGTTCCA
Statistics
Matches: 2509, Mismatches: 342, Indels: 183
0.83 0.11 0.06
Matches are distributed among these distances:
874 2 0.00
875 1 0.00
876 2 0.00
877 526 0.21
878 202 0.08
879 221 0.09
880 7 0.00
881 11 0.00
882 10 0.00
883 3 0.00
884 3 0.00
885 1 0.00
886 2 0.00
888 6 0.00
889 32 0.01
890 617 0.25
891 106 0.04
892 2 0.00
893 1 0.00
894 2 0.00
895 3 0.00
896 147 0.06
897 17 0.01
898 189 0.08
899 9 0.00
900 194 0.08
901 5 0.00
902 100 0.04
903 88 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGA
GGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACCAGCCGATCCCCAGCTTGCGCACCCG
CCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAG
CACATGCTGGGCTTGAGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGC
ATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCCGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCCGCCC
Found at i:15524881 original size:26 final size:26
Alignment explanation
Indices: 15524851--15524900 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15524841 GACTTAGGTG
15524851 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
15524877 TACGGAGTTCGTTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15524901 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15525590 original size:26 final size:26
Alignment explanation
Indices: 15525560--15525612 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15525550 GTTGACTTAG
15525560 GCATACGGAATTCATT-CATAGTCTAA
1 GCATACGGAATTCATTCCAT-GTCTAA
*
15525586 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAATTCATTCCATGTCTAA
15525612 G
1 G
15525613 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATGTCTAA
Found at i:15526488 original size:26 final size:26
Alignment explanation
Indices: 15526459--15526511 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15526449 GTTGACTTAG
15526459 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15526485 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15526511 G
1 G
15526512 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15526619 original size:14 final size:14
Alignment explanation
Indices: 15526579--15526612 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
15526569 GCATTTTTCT
*
15526579 TCACCGAGGCACCA
1 TCACCGAGGCATCA
15526593 TCACCGAGGCATCA
1 TCACCGAGGCATCA
15526607 TCACCG
1 TCACCG
15526613 GAGCATCGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.41, G:0.21, T:0.12
Consensus pattern (14 bp):
TCACCGAGGCATCA
Found at i:15528283 original size:26 final size:26
Alignment explanation
Indices: 15528254--15528306 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15528244 GTTGACTTAG
*
15528254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15528280 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15528306 G
1 G
15528307 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15529399 original size:903 final size:880
Alignment explanation
Indices: 15525170--15538209 Score: 6425
Period size: 903 Copynumber: 14.4 Consensus size: 880
15525160 AAACGGTCAC
*
15525170 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** * *
15525235 ATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGAGGTGCTTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * ** *
15525300 CCACCTACCACCCTATCGATCCATGGCTTGCGCATTCCGTCTCTCTGGTCGGTGTAGTGCCCACC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
** * * *
15525365 TTCCCG-CTCGCCCGCTCGTTTCATCAGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
195 CGCCCGTC-CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * *
15525429 TCGGACCAGTCTGAGGGTTGTGGCAGC-AGCATCGGCAGCATGCAGAGGAGGACCCGATCGATCC
259 TCAGACCAGACCGAGGGTTGCGGCAGCAAG-ATCGGTAGCACGCAGAGGGGGACCCGACCGATCC
* * * *
15525493 CCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTT
323 CCGGCTTGCGCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTT
* * ** * *
15525558 AGGCATACGGAATTCATTCATAGTCTAAGCATACGGAGTTCATT-CCATGTCTAAGATCAGACTG
387 AGGCATATGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCA-GTGTAAG-TCAGAC--
* ** *
15525622 GACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
447 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCG
* * *
15525687 GGGCACCATCACCGGAGCATCATCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGG
512 GGGCACCAT---C-G-G--T--TCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATC-GGG
* ** *
15525752 GGGCCGGGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGT-CTTGGCCCTTATATTGGCCCC
567 GGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAATT-G----TATA-TGGCCCC
* * * * *
15525816 TTATCCCTCATCAAAGCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTG
625 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
15525881 GTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTA
690 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
15525946 CACTTCGAGTTTTTAGCTCAAGTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCA
755 CACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * ** *
15526011 GGTTTGGGGCCAAAACCCCTTCCGTAAAAATTTTAAAAAATCTGGAACCGTAAAAAGTTTAA
819 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
*
15526073 AAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
15526138 ATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* *
15526203 CCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * *
15526268 CGCCC-T---CCCACTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTGAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * ** * ** * * * * *
15526329 TGGGCTGGACCAAGGGTTATGGTAGC-AGTATCGGCAGTACGTAGAGGGGGA-CCTAGCCGATCC
260 CAGACCAGACCGAGGGTTGCGGCAGCAAG-ATCGGTAGCACGCAGAGGGGGACCCGA-CCGATCC
* * *
15526392 CTGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTT
323 CCGGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTT
* * * *
15526457 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCAGATCGG
387 AGGCATATGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTGTAAG-TCAGA-C-G
* * * * * * * *
15526522 ATCGAGGGTTACGG-AGCACATGATGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGA
448 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGG
*
15526586 GGCACCATCACCGAGGCATCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
513 GGCACCAT---C--GG-----T----------T---CGGAGAACCTGACCGGCGGCATTGAGGTT
** * * * * * * *
15526651 CCAACGATCAAGAGGGCCGGGGGGTGTGCGTACATGATGTGCGATAGGTGCTGGCACTTGGCCCT
555 CCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAATT-G----
* *
15526716 TATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAA
614 TATA-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
15526781 TTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCT-AAATAGGGACATTTTTTTCAAATGGTCA
678 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
15526845 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATAGAAGGA
743 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGA
* * * * * * * *
15526910 CCACGTTTACCAGGTTTGGGGACAAAACGCCTTCCAAAAAAATTTAAAAAAATCTC-GAACTGTA
807 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAGAACCGTA
*
15526974 AAAAGTTTTA
871 AAAAGTTTCA
* * *
15526984 AATATTGTGAAAAATTA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
1 AAAATCGTGAAAAA-TAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
15527048 CATTGTACGGATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAGGAGCCTAAA
64 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
* * *
15527113 CCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGTGCCAGC
129 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * *
15527178 CCGCCCGCCCGCCTGTCCGCTCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCT
194 CCGCCCGTCCG-C---CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * ** *
15527243 AAGATCAGACC-GAACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGGTCA
255 AAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCG
* * * * * * *
15527307 ATCCCCGACTTGAGCATCCCGCCTCTCTGGCACGTTGAGCGCCCGCACGCTTGTTTCGTGGGTTG
319 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
* *
15527372 ACTTAGGCATACGGAGTTAATTCCCAG--T---C-T-A-AG---A-T--C-G-G--A-TC-G--G
383 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAAGAGTTCATTCCCAGTGTAAGTCAGACG
* * * * * ** * * *
15527415 ACCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATTTGCTGGTGTCGTATTTTACTTTGCCGA
448 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGG
** * * * *
15527480 GGCACCATCGTCGGAGCACCGCCGGAGAACCAGACCGGTGGCATTGGGGTTCTGGCGATCGGGGG
513 GGCACCA---TC-G-G----TTCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGG
* * * * * *
15527545 GTCGGGGGGTCTGCGCATATCATGTGCAATGGGTGCTGGTACTTAGCCCTTATATTGACCCCCTA
569 GCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAATT-G----TATA-TGGCCCCCTA
15527610 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
628 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
15527675 CCAGTAGGCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAAC
693 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
15527740 TTCGAGTTTTTAGCTGAATTGTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACAAAGT
758 TTCGAGTTTTTAGCTGAATT-TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * * * *
15527805 TTGGGGCAAAAACTCATTCCGTAATAATTTTAAGAAATTCAAAACCGTAAAAACTTTCG
822 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
*
15527864 AAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAAA-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
15527929 ATTCTACGAATTTATAAGCCATAAAAATGGCTTTGGCACGTAAAAATATGAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* *
15527994 CCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * *
15528059 CGCCCGCCCACCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
15528124 CAGACCAGACTGAGGGTTGCGACAGCAAGATTGGTAGCACGTAGAGGGGGACCCGATCGATCCCC
260 CAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * *
15528189 GGCTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGTGTTGACTTAG
325 GGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* *
15528254 GCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
389 GCATATGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTGTAAG-TCAGAC--GAC
* * * * **
15528319 CGAGGGTTGCTGCAGCACATGCTTGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGGG
450 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
* *
15528384 CACCATCGTCGGAGTATCGCCGGAGAACCTGACGGGCGGCATTGAGGTTCCGGAGATCGGGGGGC
515 CACCA---TC-G-GT-T---CGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGC
* *
15528449 CGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTAT
571 CG-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAATT-G----TATAT-GGCCCCCTAT
* *
15528514 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGCTTTGCTGC
629 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
15528579 CAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
694 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
15528644 CCAAGGTTTTAGCCGAAATTTTTTGTGCATGCCAA-AAAATATACAAGGATCACGTCTACCAAGT
759 TCGAGTTTTTAGCTG-AATTTTTTATGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGT
*
15528708 TTGGGGCCAAAACTCCTTCCGAAATAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
822 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
* *
15528767 AAAATTGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
15528832 ACTGTTTGAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * *
15528897 CCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGACCGCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* *
15528962 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
15529027 CAGACCGGGCCGAGGGTTACGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCCC
260 CAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
* ** * * *
15529092 GGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCTGGCACACTCGTTTCATGGGTTGACTTAG
325 GGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
15529157 GCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGGTCAGACCAGAC
389 GCATATGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTGTAA-GTCAGA-C-GAC
* * *
15529222 CGAGGGTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
450 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
*
15529287 CACCATC-G-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTG
515 CACCATCGGTTCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGCCGGGGGGTG
* * * *
15529350 GGCGCACATGATGTGCAATGGGTGGTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAA
580 TGCGCACATGATGTGCAATGGGTGCTGGTAAT-TG----TATA-TGGCCCCCTATCCCTCATCAA
* *
15529415 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TGGCAGTAGCCAT
639 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
15529479 TAAAGTGTC-CAGAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
704 TAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
15529543 TAGCTGAATATTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
768 TAGCTGAAT-TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * * * *
15529608 AACTCCTT-TAAAAAAAATTTAGAAAAATCCTGAACTGCAAAAAGTTTCA
832 AACTCCTTCCGAAAAAATTTTA-AAAAATCCAGAACCGTAAAAAGTTTCA
* *
15529657 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
15529722 ATTGTTTGAATTTACAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
*
15529787 CCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--
* * * * *
15529852 CGTCCGCCCG-CCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCTTTCCCAATCT
193 C--CCGCCCGTCC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
15529916 AAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGTAGCATGCAGAGGGGGACCCGACCGA
255 AAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGA
* * * * * *
15529981 TCCCCAGCTTGCGCATCCTGCCCCTCTAGCAAGCTGAGCGCCCATACGCTCATTTCGTGGGTTGA
320 TCCCCGGCTTGCGCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA
15530046 CTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-AG-G---A---CC-G-G--A-T-------
384 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAAGAGTTCATTCCCAGTGTAAGTCAGACGA
* * * * *
15530090 -CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCATATTTTTCTTTGTCGGG
449 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
* *
15530154 GCACCATCGTTGGAGCTTCATCGGAGAACCTGACTGGCGGCATTGAGGTTCCGACGATCGGGGGG
514 GCACCATC----G-G--T--TCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATC-GGGGG
* * *
15530219 GCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
569 GCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAATT-G----TATA-TGGCCCCCTA
* * * *
15530284 TCTCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTG
628 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
15530349 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACAC
693 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
15530414 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGACCACGTCTACCAAGT
758 TTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
15530479 TTGGGG-CAAAAATCCCTCCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCA
822 TTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
*
15530538 AAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15530603 ATTGTATGCATTTACATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * *
15530668 CCACCTACCACCCTATCGATCCACGGCTTGTGCATCTCGTCTCTCTGGCCGGCGCAGT----GCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * * *
15530729 TGCCCGTCCGCTCGCACATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * ** ** ***
15530794 CGGA-TAGGACCTAGGGTTGTGGCAGC-ATAT-GCTACGCTCGGGCATGTGCTGGTGCCGTAATT
260 CAGACCA-GACCGAGGGTTGCGGCAGCAAGATCGGTA-GCAC--GCA-GAGGGGGACCCG-ACCG
* * *** * * *
15530856 TTCTTCGCCGAGGCACCATCGTCGGACCATCGCCAGAGAACT-TGACCGACGACATTGAGGGTTC
319 ATC--C-CC--GG---C-TTG-C-G--CATC-CC-G-CCCCTCTG---G-CGGC--TGAGCG-CC
* * * ** * * * * ** *
15530920 CG-ACGATCG---GGGGGGCCGAGGGGGTGT-GCGCACAT-GATGTGCGATGGGTGCTGGTACTT
361 CGTACGCTCGTTTCGTGGGTTGA----CT-TAG-GCATATGGA-GTTC-AT---TCCCAGT-CTA
* * ** * ** * * **** ***
15530979 GGCCCTTATATTG-GCCCCCAATCCCTCA-TCAAACCTCGAGAACTCACAC-CCCCTTAAAG-AG
414 AG--C--ATA-AGAG--TTC-ATTCC-CAGTGTAA-GTC-AG-AC-GAC-CGAGGGTTGCGGCAG
* * * ** * ** ** * ** * ***** *
15531040 CATTTAAGAT--TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-A-CACTT
465 CA--CATGCTGGGCT-CGGGCATG-TGCTGGT-GCCA--CATTTTTCTTCGCCGGGGCACCA-TC
** ** * *** * * * * * *** *********** **
15531101 TTTTCAAATGGTCACAAAATCTTGTAC-ACTTTGAGTTTTTAGC--T--GAATTTTTTTATGCAT
522 GGTTCGGA--G-AACCTGA-C-CG-GCGGCATTGAGGTTCCGGCGATCGGGGGGCCGGGGGGTGT
* ** * ** * **** * * **** * *
15531161 GC-CAACA-AAAATACAA-GGGT-CTCATCTACCAAATTTAGGGCTAAAACTCCTTCCGA-AAAA
581 GCGC-ACATGATGTGCAATGGGTGCTGGT-AATTGTATAT-GGCCCCCTA-TCCCT-C-ATCAAA
** ** * * * * * * * *
15531221 ATTTTA-AAAT-AC-CCCGAACCGTAAAAAGGTTCGAAAATCGTGAAAAATATAAAACGAG-TTG
640 CCTCGAGAACTCACACCC---CCTTAAAGA-G--C----AT-TTG--AGATTTTACA-G-GTTTG
* * * * * *
15531282 TCTTGCCATGAAACTTCACGTGAAG-G-CT-TAA--GGGAC-CATTATAAGAGTTT-ACAA--GC
690 -C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGACAC-TT-T-----TTTCA-AATGGT
* * * * * ** * ** ** ** * *
15531338 CATAAAAATGGCATTG-GCA-TGCAGAAATATGAAGATG--TGCCTAAACCCACCTACCACCCTA
741 CA-CAAAAT--C-TTGTACACTTC-G-AGTTTTTAGCTGAAT-TTTTTATGCA--TGCCA-AC-A
*** * * * ** * ****
15531399 TCGATCCACGGCTAGCGAATCCCGTCTCTCTGGCCGGCATAGTGGCCGCTCGCCCGCCCGCTCGC
795 AAAAT--A---CAAG-G-ATCACGTCT-AC---CAAG--T-TTGG--G---G-CC-AAAACTC-C
* **** ****** * ** ** * *** *
15531464 TCGCCCG--CTCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCATCC
838 T--TCCGAAAAAATTTTAAAAAAT-CCAGAACCGTAAAAAGTT--TCA
** * * * * ** * * * ** * * *** * * * * *
15531510 CCAGTC-T-AAGATTGGACCAGACTGAGGGTTG-TAGTAGCAGGATCGAC-AGCACGCATAGGGG
1 AAAATCGTGAAAAATAGAAAAAAGT-CGTCTTGCCA-T-GAAACTTC-ACGTGAAGGCTTA-AGG
* ** * * * ***** ** * **
15531571 GACCCAATCG-ATCCCCG-GCTTGCGCATCC-TGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
61 GA-CC-ATTGTAT----GAATTTAC-AAGCCAT--AAAAATGG-C-ATTG-GCA--CGTA-G-AA
* * ** * * ** ** ** * * *
15531633 GTTTCGTGGGT-TGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGCATACA-GAG-TT---CA
110 ATAT-GAAGATGTG-CCTAAACCCACCTA--CCA-CCCTA-TC---G-ATCCACG-GCTTGCGCA
* * ** * * * * ** **
15531692 TTCCCAGTCTAAGATC-GGACCAGAACG-AGGGTTGCGGCAGCACAT--GCTGGGCTCG-GGCAT
164 -TCCC-GTCT---CTCTGG-CC-G-ACGTAGTG-CCCGCCCGCCCGTCCGC-CCGCTCGTTTCAT
* * **** ** * ** * *
15531752 --G-T-GC-TGGTGC-TGCATTTTTC-TTCGTCGGGGC-ACCATC-G-CCAGAGC-A---TCGCC
219 CGGTTGGCTTAG-GCATACGGAGTTCATTC--CCAGTCTAAGATCAGACCAGACCGAGGGTTG-C
* * ** ** * **** ** * ** **
15531803 GG-AG-AACAT--G-ACCGACGGCA-TTGGGGTTCC-AACGATAGGGGGGCCGGGGGGTGTGCGC
280 GGCAGCAAGATCGGTAGC-AC-GCAGAGGGGGACCCGACCGAT-CCCCGGCTTGCGCAT-CCCGC
* * * * * * ** * ** * ** * * *
15531861 ACATGATGTGC-GATGGGTGCTGGTACTTGC-CCTTATATTGGCCCCCTATCCCTCA-TCAAACC
341 CCCT-CTG-GCGGCTGAGCGCCCGTAC--GCTCGTT-TCGTGG----GT-TGACTTAGGCATA--
** ** ** ** * * * ** * *
15531923 TTGAGAACTCACACCCCCT-TAAAGAGCATTTGAGATT--TTACAAGTTTGCTGCCAGTAGCCAT
394 -TG-GAGTTCATTCCCAGTCT--A-AGCATAAGAG-TTCATTCCCAGTGT-AAGTCAG-A-CGA-
*** * * * * ** **** * ** * * *
15531985 TAAAGTGTCTGAAATGTGGA-CACTTTTTTCAAAT-GGTCACAAAAT-CTTGT-ACACTTTTAGT
449 CCGAGGGT-TG---CG-GCAGCAC-ATGCTGGGCTCGG--GC-ATGTGCTGGTGCCACATTT--T
* * * * *** ** * * **** * ** * * *
15532046 TTTTAG-C--TGAATTTTTTTGTGCATGCGAAAAAAAAATAC-AAGG-A-TCACGTCTACCAG-G
503 TCTTCGCCGGGGCA-CCATCGGTTC--G-GAGAACCTGA-CCGGCGGCATTGAGGT-T-CCGGCG
** ***** * * * ** * * *** * ** * ** **
15532104 -T-TTGGGGCC-AAAACTCCTTC-CAAAAAAATTTTCAA-AAAT-CTCG-AACCGTAAAAAG-TT
561 ATCGGGGGGCCGGGGGGT-GTGCGC-ACATGATGTGCAATGGGTGCTGGTAATTGTATATGGCCC
* **** * * ** * * * *** * * *** ** * * *
15532161 TC-AAAAATCGTGAAAAATAGAGAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGA
624 CCTATCCCTCATCAAACCTCGAG--A-ACTC-ACACCCCCTTAAAGAGCATTTG-AGATTTTACA
** * * * * * * ** ** *** **** *
15532225 GACCATTGTATG-AATTTATAGGCCATGAAAATGGCATTGGCATGCAGA-AAGATGAAGATAT-G
684 G--GTTTG-CTGCCA---GTA-GCCATTAAAGTGTC--TGAAATGGGGACACTTTTTTCAAATGG
* *** * **** ** * * ***
15532287 -C-CTAAACCCACCTACCACCCTATCGATCCGCGGCTAGC-GAATCCCGTCTCT-C-TGGCTGGC
740 TCAC-AAA---ATCTTGTACACT-TCGA---GTTTTTAGCTGAAT--TTTTTATGCAT-GCCAAC
* * * * * * * ** * ** * ** * ** * *
15532347 -ATAGTGGC--CGCTCGCCCGCCCGCC-CGCTCGTT-TCGTC-GGA-TGGCTTAGGAATATGGAG
794 AAAAAT-ACAAGGAT--CACGTCTACCAAG-T--TTGGGGCCAAAACT-CCTTCCGAA-A--AAA
**** * * * *
15532405 TTTATCCCCAGTCTAAGATTGGACCAG-ACTGAAGGTTGTAGCA
849 TTT-TAAAAAATC-CAGA----ACC-GTA--AAAAGTT-T--CA
** *** * ** * ***
15532448 GCAGGATCG-GCAGCACGCAGAGGGGGACCCAATCGATCCCCGACTTGCACATCCTGCCCCTCTG
1 --AAAATCGTG-A--A---A-A-ATAGA--AAAAAG-T---CGTCTTGC-CA---TGAAACT-T-
* * * ** * * * * *
15532512 GC-CGGCTG-A-GCTCTCACA-CG-CTCGTT-TCGTGGGTTGA-ATTAGGCATACATA-GTTCAT
44 -CAC-G-TGAAGGCT-T-A-AGGGAC-CATTGT-ATGAATTTACA--AGCCATAAAAATG-GCAT
* * ** * ** * * * **
15532569 T--C-C-CAG---TCT-AAGATCG-GACC-GGACCAAGGGTTAGGGCA-GC-A-C-ATGCTGGGC
98 TGGCACGTAGAAATATGAAGAT-GTG-CCTAAACCCA--CCTA--CCACCCTATCGATCCACGGC
* ** * * ***** ** ** ***** * ** ***
15532620 TTGAGCATTTGCTGGTGGCGTATTTTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
157 TTGCGCA--T-CCCGT--C-TCTCTGGCCGACGTAGT--GCCCGCCCG-CCCGT---CCG-CCCG
* * * * ** * * ***
15532685 CAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
209 C---TCGT------T-----TC-A-TCG-GTTGGC-TTAGGCAT-ACG-G-A-G-TTCA-TTCCC
* ** * *** * * * * * * * *
15532750 ATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTTCCGAAA
250 A--GTCT-AAGAT-CAGA-CCAGACCGA-GG-GTT-GC-GGCAGCAAGAT--CG--G-T-AG-CA
***** * * * * *
15532814 C-CA-ACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
299 CGCAGA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG---C-C---CC-TC-T-G-G--C
** * * * * * *
15532877 GCCCGTCTGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAT
350 G---G-CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
* * * *
15532942 CTAAGCATACGAAGTTCATTCCCAGTCTCTAA-TCGGACCGGACCAAGGGTTGCGGCAGCACATG
411 CTAAGCATAAG-AGTTCATTCCCAG--TGTAAGTCAGA-C-GACCGAGGGTTGCGGCAGCACATG
** * ** *** * * *
15533006 CTGGGCTCAAGCATGTGCTGGTACCGTATTTTTCTTTATCAGGGCACCATC-G-TCAGAGAACTT
471 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGGTTCGGAGAACCT
* * * * **
15533069 GACCTGCAGCATT-AGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGTGAT
536 GACCGGCGGCATTGA-GGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAAT
*
15533133 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
599 GGGTGCTGGTAATT-G----TATA-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
15533198 CCTTAAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT-ACTTGAAATGA
658 CCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGG
*
15533262 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
721 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATG
* * * * * *
15533327 CATGCCAACAATAATACAAGGATCACGTCTTCTAAGTTGGGGGCCAAAAATCCTTCCGAAAAGAT
785 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
15533392 TTTTAAAAATCTC-GAACCGCAAAGAGTTTTA
850 TTTAAAAAATC-CAGAACCGTAAAAAGTTTCA
** *
15533423 AAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACC
1 AAAATCGTGAAAAATAGA-AAAAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
15533488 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAGAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
*
15533553 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * *
15533616 C-CAC--CAGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** * * * * * *
15533678 CGGACCAGACCGAGGGTTGCGGTGGCAGGATCGGCAGCACGTAAAGGGGGACCCGATCGATCCCT
260 CAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
** * * * **
15533743 ACCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAATTTCGTGGGTTGACTTAG
325 GGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
15533808 GCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCATTCTAAGATCGGACCAGAC
389 GCATATGGAGTTCATTCCCAGTCTAAGCATAAG-AGTTCATTCCCAGTGTAAG-TCAGA-C-GAC
* * * * * **
15533873 CGAGGGTTGTGGTAGCACATGTTGGGCTCGGGCATATGCTGGTGCCATATTTTTCTTCAACGGGG
450 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
* ** * * * *
15533938 CACCATCGTCAGAGCGTCGCCGGAGAACCAAACCGACGGCATTGGGGATCCGACGATCGGGGGGG
515 CACCA---TC---G-GT--TCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATC-GGGGGG
* ** * *
15534003 CCGGGGGGTGTGGGCACATGATGTGTGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTAT
570 CCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA-ATTG----TATA-TGGCCCCCTAT
15534068 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
629 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
15534133 TAGTAGCCATTAAAGTGTCTGAACTAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
694 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
15534198 TTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTT
759 TCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
15534263 TGGGGCTAAAACTCTTTCCGAAAAAATTTTAAGAAATCTC-GAACCGTAAAAAGTTTCC
823 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAGAACCGTAAAAAGTTTCA
* * * *
15534321 AAAATCGTGAAAAATAGAAAACGAGTCATCTTTCCATGAAACTTCACGTGAAGGCTTAAGGCACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
15534386 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATACGTAGATGTACATAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
15534451 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * *
15534516 CGTCCGTCCTCCCGCTCGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTGAGA
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGA
* *** * * ** * * *
15534580 TCGGATTGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGCACAAGGGGACCCGACCGATCCT
259 TCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCC
* * * * * *
15534645 CGACTTGCGCATCCCGCCCCGCTGGCCGGCTGAGAGCCTGCACGCTTGTTTCGTGGGTTGACTTA
324 CGGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
* * * *
15534710 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
388 GGCATATGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTGTAAG-TCAGA-C-GA
* * ** *
15534775 CCAAGGGTTGCGACAGCACATGCTGGAATCAGGCATGTG-TCGGTGCCACATTTTTCTAT-GCCG
449 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCACATTTTTCT-TCGCCG
* * * * * * *
15534838 GGGCACCATC-G-TCGGAGAACCAGACCAGCAGCATTGGGGTTCTGACGATCAGGGGGCC-GGGG
512 GGGCACCATCGGTTCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGCCGGGGG
* ** *** * *
15534900 ATG-G-GTGC-T-A-GT---A---GT--TGGCCCTTATAT-TGGCCCCCTATCCCTCGTCAAACC
577 GTGTGCGCACATGATGTGCAATGGGTGCTGGTAATTGTATATGGCCCCCTATCCCTCATCAAACC
* * * * *
15534951 TCGAAAACTCATACCCGCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTACCAGTAGCCATTAA
642 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
15535016 AGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAATTCCTGTACACTTCGAGTTTTTATC
707 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
15535081 TGAATTTTTTTGTGCATGCCAA-AAAATATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAAC
772 TGAA-TTTTTTATGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * *
15535145 TCCTTCC-CAAAAAGTTTAGAAAATCCCGAATCGTAAAAAGTTTAA
835 TCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
* * *
15535190 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
15535255 ATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * *
15535320 CCACCTACCACCCTATCGATCAACGGCTTGCACATCCTGTCTCTCTGGCCGACATAGTGCCCGCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * * *
15535385 CGTCCGCCCACTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * * * **
15535450 CGGATCGGACC-ATGGGTTGCTGCAGTAGGATTGGCAGCATGCAGA-GGGGTCCCGGGCGATCCC
260 CAGACCAGACCGA-GGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCC
** * * * * ** *
15535513 CCCCTTGTGCATCCCTCCCCTCTAGCCGGTTGAGTTCCCGCACGCTCGTTTCGTGGGTTGACTTA
324 CGGCTTGCGCATCCCGCCCCTCT-GGCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
* * * * **
15535578 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGA
388 GGCATATGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTGTAAG-TCAGA-C-GA
* * * * * * *
15535643 CCGAGGGTTGCAGCAGCACATTCTGTGCTCGGGCATGTGCTGGTGTCATATTTTTCGTCGTCGGG
449 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
* * * * *
15535708 CCACCATCGCTGGAGCATCGTCGAAGAACTTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGG
514 GCACCAT--C--G-G--T--TCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATC-GGGGG
* ** *
15535773 GCCGGGGGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCT
569 GCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAATTG-----TATA-TGGCCCCCT
*
15535838 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCT
627 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
**
15535903 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACA
692 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15535968 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
757 CTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * * * **
15536033 TTTGATGCCAAAACGCCTTCTGAAAAAATTTTAAAAAATTCC-GAATCGCAAAATGTTTTG
821 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-TCCAGAACCGTAAAAAGTTTCA
*
15536093 AAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
15536158 ATTGTATGATTTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * *
15536223 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGACCGCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * * **
15536288 CGCCCGCCCGTCCGCTCGTTTCGTCGGTTTGCTTAGGCATACGAAGTTCATTCGTAGTCTAAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * ***
15536353 CAAATCAGACCGAGGGTT-CTGGTAGCAGGATCGGTAGCATGGAGAGCGGGACCCGGTTGATCCC
260 CAGACCAGACCGAGGGTTGC-GGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCC
* * * * * *
15536417 CGGCTTGTGCATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTA
324 CGGCTTGCGCATCCCGCCCCTCT-GGCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
* * * * *
15536482 GGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGA
388 GGCATATGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTGTAAG-TCAGA--CGA
* * * * * * *
15536547 CTGAGGGTTGCGGTAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGG
449 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
* * * * *
15536612 GCACCATC-G-CCGGAAAACCTGACCGACGGCATTGGGGTTCTGGCGATCGAGGGGGCCGAGGGG
514 GCACCATCGGTTCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCG-GGGGGCCG-GGGG
* * * * *
15536675 GTGTGCGCACATGATGTGCGATGGGTGGTGGCACTTGGCCCTTATATTGGCCCACTATCCCTCAT
577 GTGTGCGCACATGATGTGCAATGGGTGCTGGTAATT-G----TATA-TGGCCCCCTATCCCTCAT
*
15536740 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
636 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
15536805 CATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTT
701 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
15536870 TTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCC
766 TTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
15536935 AAAA-TCCTTCCGAAAAAATTTTCAAAAATCCCGAACCCTAAAAAGTTTCA
830 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
* * * *
15536985 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACT
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
15537050 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * *
15537115 CCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCACC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* ** * * *
15537180 CTCCCACCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** * **
15537245 CAGACCAAACCGAGTGTTACGGCAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCAT
260 CAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
** * * * * * *
15537310 GGCTTGCGCATCTTGCCCCTCTGGCCAGCTGAGCGCCAGCACTCTCGTTTCATGGGTTAACTTAG
325 GGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
*** * * * * *
15537375 GCATACATAGTTCA-TCCCTA-TCTAAACATACGGAGTTAATTCCCAGTCTAAGATCGGACCGGA
389 GCATATGGAGTTCATTCCC-AGTCTAAGCATA-AGAGTTCATTCCCAGTGTAAG-TCAGA-C-GA
* * * * * *
15537438 CCGATGGTTGCGGCAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGG
449 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
* * * * *
15537503 GCACCATCATCGGAGCATTGCCGAAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGAGGGG
514 GCA-C--CATC-G-G--TT--CGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCG-GGGG
* * * *
15537568 GCCGGGGGGGTGTGTGCACATGATGTGCGAA-GGGTGCTGGCACTTGGCCCTTCTATTGGCCCCC
569 GCC-GGGGGGTGTGCGCACATGATGTGC-AATGGGTGCTGGTAATT-G----TATA-TGGCCCCC
* *
15537632 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTATAGGTTTGC
626 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15537697 TGGCC-GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
691 T-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
15537761 CACTTCGAGTTTTTAGCTGAATTGTTTTTTTCATGCCAACAAAAATACAAGGATCACGTCTACCA
755 CACTTCGAGTTTTTAGCTGAATT-TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* ** * *
15537826 AGCTTGGGGCCAAAACTCCTTTAGAAAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTTCG
819 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
* *
15537887 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAA-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
15537952 ATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
65 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * *
15538017 CCACCTACCACCCTATCGATCCACGGCTTTCGTATCCCGTCTCTCTGGCCGACGTAGAGCCTGCC
130 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
*
15538082 CGCCCGT----CCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
195 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *** * *
15538143 CAGACCAGACCGAGGGTTGCGGTAGCAGGATCAACAGCATGCAGAGGGGGACCCGATCGATCCCC
260 CAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
15538208 GG
325 GG
15538210 GATGCACGCT
Statistics
Matches: 9410, Mismatches: 1960, Indels: 1539
0.73 0.15 0.12
Matches are distributed among these distances:
867 1 0.00
868 250 0.03
869 308 0.03
870 202 0.02
871 3 0.00
872 9 0.00
873 73 0.01
874 7 0.00
875 8 0.00
876 184 0.02
877 6 0.00
878 3 0.00
879 216 0.02
880 491 0.05
881 332 0.04
882 21 0.00
883 2 0.00
884 6 0.00
885 7 0.00
886 8 0.00
887 4 0.00
888 145 0.02
889 20 0.00
890 341 0.04
891 237 0.03
892 472 0.05
893 320 0.03
894 249 0.03
895 11 0.00
896 12 0.00
897 16 0.00
898 554 0.06
899 348 0.04
900 15 0.00
901 7 0.00
902 819 0.09
903 1516 0.16
904 232 0.02
905 1 0.00
906 2 0.00
907 1 0.00
908 3 0.00
909 3 0.00
910 10 0.00
911 362 0.04
912 145 0.02
913 3 0.00
914 7 0.00
915 4 0.00
916 5 0.00
917 1 0.00
918 5 0.00
919 167 0.02
920 5 0.00
921 1 0.00
922 5 0.00
923 11 0.00
924 10 0.00
925 20 0.00
926 4 0.00
927 6 0.00
928 6 0.00
929 5 0.00
930 15 0.00
931 8 0.00
932 7 0.00
933 6 0.00
934 2 0.00
935 26 0.00
936 25 0.00
937 25 0.00
938 15 0.00
939 18 0.00
940 17 0.00
941 14 0.00
942 22 0.00
943 12 0.00
944 6 0.00
945 18 0.00
946 2 0.00
947 4 0.00
948 7 0.00
949 13 0.00
950 20 0.00
951 16 0.00
952 21 0.00
953 18 0.00
954 30 0.00
955 16 0.00
956 15 0.00
957 13 0.00
958 17 0.00
959 26 0.00
960 45 0.00
961 22 0.00
962 23 0.00
963 15 0.00
964 8 0.00
965 12 0.00
966 9 0.00
967 10 0.00
968 7 0.00
969 17 0.00
970 23 0.00
971 21 0.00
972 13 0.00
973 12 0.00
974 5 0.00
975 3 0.00
976 5 0.00
977 6 0.00
978 11 0.00
979 3 0.00
980 6 0.00
981 6 0.00
983 9 0.00
984 5 0.00
985 16 0.00
986 17 0.00
987 5 0.00
988 21 0.00
989 35 0.00
990 16 0.00
991 14 0.00
992 29 0.00
993 36 0.00
994 45 0.00
995 33 0.00
996 13 0.00
997 7 0.00
998 14 0.00
999 14 0.00
1000 32 0.00
1001 22 0.00
1002 5 0.00
1003 8 0.00
1004 15 0.00
1005 1 0.00
1008 4 0.00
1009 4 0.00
1010 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
AAAATCGTGAAAAATAGAAAAAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
GCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGC
ATATGGAGTTCATTCCCAGTCTAAGCATAAGAGTTCATTCCCAGTGTAAGTCAGACGACCGAGGG
TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT
CGGTTCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCA
CATGATGTGCAATGGGTGCTGGTAATTGTATATGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
Found at i:15530551 original size:881 final size:879
Alignment explanation
Indices: 15525170--15530820 Score: 6750
Period size: 903 Copynumber: 6.3 Consensus size: 879
15525160 AAACGGTCAC
15525170 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** * *
15525235 ATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGAGGTGCTTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * ** *
15525300 CCACCTACCACCCTATCGATCCATGGCTTGCGCATTCCGTCTCTCTGGTCGGTGTAGTGCCCACC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
** * * * *
15525365 TTCCCG-CTCGCCCGCTCGTTTCATCAGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
196 CGCCCGCCT-GCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * *
15525429 TCGGACCAGTCTGAGGGTTGTGGCAGC-AGCATCGGCAGCATGCAGAGGAGGACCCGATCGATCC
260 TCAGACCAGACCGAGGGTTGCGGCAGCAAG-ATCGGCAGCACGTAGAGGGGGACCCGACCGATCC
* * * *
15525493 CCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTT
324 CCGGCTTGCGCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTT
* **
15525558 AGGCATACGGAATTCATTCATAGTCTAAGCATACGGAGTTCATTCCATGTCTAAGATCAGACTGG
388 AGGCATACGGAGTTCATTCCCAG--T---C-TA---AG--CA-T-CA-G----AGATC---C-GG
* ** *
15525623 ACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
431 ATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGG
** ** *
15525688 GGCACCATCACCGGAGCATCATCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGG
496 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGG
* * *
15525753 GGCCGGGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGT-CTTGGCCCTTATATTGGCCCCT
560 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * * *
15525817 TATCCCTCATCAAAGCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGG
624 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
15525882 TGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTAC
689 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
15525947 ACTTCGAGTTTTTAGCTCAAGTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAG
754 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * ** *
15526012 GTTTGGGGCCAAAACCCCTTCCGTAAAAATTTTAAAAAATCTGGAACCGTAAAAAGTTTAA
819 GTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
* *
15526073 AAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
15526138 ATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* *
15526203 CCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * *
15526268 CG--C-CCT-CCCACTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTGAGAT
196 CGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * ** * ** * * *
15526329 TGGGCTGGACCAAGGGTTATGGTAGC-AGTATCGGCAGTACGTAGAGGGGGA-CCTAGCCGATCC
261 CAGACCAGACCGAGGGTTGCGGCAGCAAG-ATCGGCAGCACGTAGAGGGGGACCCGA-CCGATCC
* * *
15526392 CTGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTT
324 CCGGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTT
15526457 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCAGATCGG
388 AGGCATACGGAGTTCATTCCCAG--T---C-TA---AG--CA-T--CAG----AGATC----CGG
* * * * * *
15526522 ATCGAGGGTTACGG-AGCACATGATGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGA
431 ATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGG
15526586 GGCACCATCACCGAGGCATCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
496 GGCACCAT---C---G-----T---CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * * *
15526651 CCAACGATCAAGAGGGCCGGGGGGTGTGCGTACATGATGTGCGATAGGTGCTGGCACTTGGCCCT
547 CCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15526716 TATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAA
611 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
15526781 TTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCT-AAATAGGGACATTTTTTTCAAATGGTCA
676 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
15526845 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATAGAAGGA
741 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGA
* * * * * * *
15526910 CCACGTTTACCAGGTTTGGGG-ACAAAACGCCTTCCAAAAAAATTTAAAAAAATCTC-GAACTGT
806 TCACGTCTACCAAGTTTGGGGCA-AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAGAACCGT
*
15526973 AAAAAGTTTTA
869 AAAAAGTTTCA
* *
15526984 AATATTGTGAAAAATTA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
1 AAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
15527048 CATTGTACGGATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAGGAGCCTAAA
65 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
* *
15527113 CCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGTGCCAGC
130 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GC
* * * *
15527178 CCGCCCGCCCGCCTGTCCGCTCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCT
191 CCGCCCGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** *
15527243 AAGATCAGACC-GAACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGGTCA
256 AAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACCG
* * * * * * *
15527307 ATCCCCGACTTGAGCATCCCGCCTCTCTGGCACGTTGAGCGCCCGCACGCTTGTTTCGTGGGTTG
320 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
* * *
15527372 ACTTAGGCATACGGAGTTAATTCCCAGTCTAAG-ATC-G-GAT-CGGACCGAGGGTTACGGTAGC
384 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCAGAGATCCGGATCGAGGGTTACGGCAGC
* * * ** * * *
15527433 ACATGCTAGGCTCGGGCATTTGCTGGTGTCGTATTTTACTTTGCCGAGGCACCATCGTCGGAGCA
449 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
* * * * * * * *
15527498 CCGCCGGAGAACCAGACCGGTGGCATTGGGGTTCTGGCGATCGGGGGGTCGGGGGGTCTGCGCAT
514 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
* * * *
15527563 ATCATGTGCAATGGGTGCTGGTACTTAGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGA
579 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
15527628 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTG
644 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
15527693 TCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAA
709 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
15527758 TTGTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCAAAAACTCATT
774 TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTT
* * * * * * *
15527823 CCGTAATAATTTTAAGAAATTCAAAACCGTAAAAACTTTCG
839 CCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
* *
15527864 AAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
15527929 ATTCTACGAATTTATAAGCCATAAAAATGGCTTTGGCACGTAAAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* *
15527994 CCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
** * *
15528059 CGCCCGCCCACCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
196 CGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
15528124 CAGACCAGACTGAGGGTTGCGACAGCAAGATTGGTAGCACGTAGAGGGGGACCCGATCGATCCCC
261 CAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCC
* * * *
15528189 GGCTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGTGTTGACTTAG
326 GGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
*
15528254 GCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
390 GCATACGGAGTTCATTCCCAG--T---C---TA-AG--CA-T--CAG----AGATC---C-GGAT
* * * * * **
15528319 CGAGGGTTGCTGCAGCACATGCTTGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGGG
433 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
* * *
15528384 CACCATCGTCGGAGTATCGCCGGAGAACCTGACGGGCGGCATTGAGGTTCCGGA-GATCGGGGGG
498 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGG
*
15528448 CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTA
562 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
15528513 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGCTTTGCTG
626 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
15528578 CCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
691 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * *
15528643 TCCAAGGTTTTAGCCGAAATTTTTTGTGCATGCCAA-AAAATATACAAGGATCACGTCTACCAAG
756 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAG
* *
15528707 TTTGGGGCCAAAACTCCTTCCGAAATAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
820 TTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
* * *
15528767 AAAATTGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
15528832 ACTGTTTGAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * *
15528897 CCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGACCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * *
15528962 CGCCCGTCC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGA
196 CGCCCG-CCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * ** *
15529026 TCAGACCGGGCCGAGGGTTACGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCC
260 TCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCC
* ** * * *
15529091 CGGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCTGGCACACTCGTTTCATGGGTTGACTTA
325 CGGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
*
15529156 GGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGGTCAGACCAGA
389 GGCATACGGAGTTCATTCCCAGTCTAAGCAT-CAGAG---A-T-CC-G-G--A--T---------
* *
15529221 CCGAGGGTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
433 -CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
*
15529286 GCACCA---TC---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
497 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
15529340 CCGGGGGGTGGGCGCACATGATGTGCAATGGGTGGTGGTACTAGGCCCTTATATTGGCCCCCTAT
562 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
15529405 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TGG
627 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
15529469 CAGTAGCCATTAAAGTGTC-CAGAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
692 CAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
15529533 TTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
756 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** * * * *
15529598 TTGGGGCCAAAACTCCTT-TAAAAAAAATTTAGAAAAATCCTGAACTGCAAAAAGTTTCA
821 TTGGGGCAAAAACTCCTTCCGAAAAAATTTTA-AAAAATCCAGAACCGTAAAAAGTTTCA
* *
15529657 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
15529722 ATTGTTTGAATTTACAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
*
15529787 CCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--
* * * *
15529852 CGTCCGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCTTTCCCAATCTA
194 C--CCGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
15529917 AGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGTAGCATGCAGAGGGGGACCCGACCGAT
257 AGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACCGAT
* * * * * *
15529982 CCCCAGCTTGCGCATCCTGCCCCTCTAGCAAGCTGAGCGCCCATACGCTCATTTCGTGGGTTGAC
322 CCCCGGCTTGCGCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
* *
15530047 TTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-AG-GA-CCGGATCGAGGGTTGCGGCAGCAC
386 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCAGAGATCCGGATCGAGGGTTACGGCAGCAC
* * * * * * *
15530108 ATGCTGGGCTCGGGCATGTGTTGGTGTCATATTTTTCTTTGTCGGGGCACCATCGTTGGAGCTTC
451 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC
** * * *
15530173 ATCGGAGAACCTGACTGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACA
516 GCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACA
* *
15530238 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAG
580 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
15530303 AACTCGCACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
645 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
15530368 CTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
710 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
15530433 TTTTTTATGCATGCCAAAAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCAAAAA-TCCCTC
775 TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACT-CCTT
* *
15530497 CCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCA
839 CCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
*
15530538 AAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15530603 ATTGTATGCATTTACATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * * *
15530668 CCACCTACCACCCTATCGATCCACGGCTTGTGCATCTCGTCTCTCTGGCCGGCGCAGTGCCTGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * *
15530733 CGTCCG-CT-CGCA--CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGAT
196 CGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
15530794 CGGA-TAGGACCTAGGGTTGTGGCAGCA
261 CAGACCA-GACCGAGGGTTGCGGCAGCA
15530821 TATGCTACGC
Statistics
Matches: 4135, Mismatches: 494, Indels: 268
0.84 0.10 0.05
Matches are distributed among these distances:
868 62 0.01
871 1 0.00
872 1 0.00
873 64 0.02
874 1 0.00
875 3 0.00
876 198 0.05
877 8 0.00
878 2 0.00
879 178 0.04
880 478 0.12
881 342 0.08
882 12 0.00
883 2 0.00
884 4 0.00
885 2 0.00
886 2 0.00
887 1 0.00
888 4 0.00
889 13 0.00
890 339 0.08
891 127 0.03
892 46 0.01
893 21 0.01
894 242 0.06
895 3 0.00
897 4 0.00
898 58 0.01
899 213 0.05
900 6 0.00
901 6 0.00
902 116 0.03
903 883 0.21
904 3 0.00
906 1 0.00
907 1 0.00
910 2 0.00
911 348 0.08
912 152 0.04
913 2 0.00
914 1 0.00
915 9 0.00
917 2 0.00
918 5 0.00
919 164 0.04
920 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCC
GGCTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATCAGAGATCCGGATCGAGGGTTACGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCAGAACCGTAAAAAGTTTCA
Found at i:15531402 original size:716 final size:714
Alignment explanation
Indices: 15530031--15531436 Score: 2195
Period size: 716 Copynumber: 2.0 Consensus size: 714
15530021 CCCATACGCT
* * * * *
15530031 CATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATAGGACCGGATCGAGGG
1 CATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATAGGACAGGACCGAGGG
** * * * * * *
15530096 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCATATTTTTCTTTGTCGGGGCACCAT
66 TTGCGGCAGCACATGCTACGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGCCGAGGCACCAT
* * * * * * * *
15530161 CGTTGGAGCTTCATCGGAGAACCTGACTGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGG
131 CGTCGGACCATCACCAGAGAACCTGACCGACGACATTGAGGTTCCGACGATCGGGGGGGCCGGGG
* *
15530226 GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCA
196 GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCA
* *
15530291 TCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAG
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAG
15530356 CCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGT
326 CCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
15530421 TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGACCACGTCTACCAAGTTTGGGGC
391 TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGACCACATCTACCAAATTTAGGGC
* * *
15530486 AAAAATCCCTCCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAA
456 AAAAATCCCTCCCGAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGGTTCAAAAATCGTGAAAA
* * *
15530551 ATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTT
521 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAAGCATTT
* *
15530616 ACATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
586 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
15530681 TATCGATCCACGGCTTGTGCATCTCGTCTCTCTGGCCGGCGCAGTGCCTGCCCGTCCGCTCGCA
651 TATCGATCCACGGCTAGCGAATCCCGTCTCTCTGGCCGGCGCAGTGCCTGCCCGTCCGCTCGCA
* * * *
15530745 CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCGGATAGGACCTAGGG
1 CATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATAGGACAGGACCGAGGG
* * *
15530810 TTGTGGCAGCATATGCTACGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGCCGAGGCACCAT
66 TTGCGGCAGCACATGCTACGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGCCGAGGCACCAT
* *
15530875 CGTCGGACCATCGCCAGAGAACTTGACCGACGACATTGAGGGTTCCGACGATCGGGGGGGCCGAG
131 CGTCGGACCATCACCAGAGAACCTGACCGACGACATTGA-GGTTCCGACGATCGGGGGGGCCG-G
*
15530940 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCT
194 GGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCT
15531005 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGT
259 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGT
* *
15531070 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
324 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGA
* ** *
15531135 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGGTCTCATCTACCAAATTTAGG
389 GTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGACCACATCTACCAAATTTAGG
* * * *
15531200 GCTAAAA-CTCCTTCCGAAAAAATTTTAAAATACCCCGAACCGTAAAAAGGTTCGAAAATCGTGA
454 GCAAAAATC-CCTCCCGAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGGTTCAAAAATCGTGA
* *
15531264 AAAATATAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAAG-A
518 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAAGCA
*
15531328 GTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
583 -TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
15531393 ACCCTATCGATCCACGGCTAGCGAATCCCGTCTCTCTGGCCGGC
647 ACCCTATCGATCCACGGCTAGCGAATCCCGTCTCTCTGGCCGGC
15531437 ATAGTGGCCG
Statistics
Matches: 625, Mismatches: 63, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
714 139 0.22
715 25 0.04
716 461 0.74
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (714 bp):
CATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATAGGACAGGACCGAGGG
TTGCGGCAGCACATGCTACGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGCCGAGGCACCAT
CGTCGGACCATCACCAGAGAACCTGACCGACGACATTGAGGTTCCGACGATCGGGGGGGCCGGGG
GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGACCACATCTACCAAATTTAGGGC
AAAAATCCCTCCCGAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGGTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAAGCATTT
ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTAGCGAATCCCGTCTCTCTGGCCGGCGCAGTGCCTGCCCGTCCGCTCGCA
Found at i:15531459 original size:12 final size:12
Alignment explanation
Indices: 15531444--15531474 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15531434 GGCATAGTGG
15531444 CCGCTCGCCCGC
1 CCGCTCGCCCGC
*
15531456 CCGCTCGCTCGC
1 CCGCTCGCCCGC
15531468 CCGCTCG
1 CCGCTCG
15531475 TTTCGTCGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.61, G:0.26, T:0.13
Consensus pattern (12 bp):
CCGCTCGCCCGC
Found at i:15531689 original size:26 final size:26
Alignment explanation
Indices: 15531652--15531704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15531642 GTTGACTTAG
*
15531652 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
15531678 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15531704 G
1 G
15531705 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15533845 original size:26 final size:26
Alignment explanation
Indices: 15533808--15533860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15533798 GTTGACTTAG
*
15533808 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
15533834 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15533860 G
1 G
15533861 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15534748 original size:26 final size:26
Alignment explanation
Indices: 15534711--15534763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15534701 GTTGACTTAG
15534711 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15534737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15534763 G
1 G
15534764 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15535616 original size:26 final size:26
Alignment explanation
Indices: 15535579--15535631 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15535569 GTTGACTTAG
15535579 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15535605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15535631 G
1 G
15535632 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15536519 original size:26 final size:26
Alignment explanation
Indices: 15536483--15536535 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15536473 GTTAACTTAG
15536483 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15536509 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15536535 G
1 G
15536536 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15537866 original size:902 final size:902
Alignment explanation
Indices: 15532899--15538209 Score: 6659
Period size: 902 Copynumber: 6.0 Consensus size: 902
15532889 GCCCGTCCGT
* ** * * *
15532899 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCC
1 TCGTTTCGTGGGTTAACTTAGGCATAC-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * **
15532964 CAGTCTCTA-ATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGT
65 CAGTCT-AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGT
* * * * * * *
15533028 ACCGTATTTTTCTTTATCAGGGCA-C--CATC---G--T-CAG-AGAACTTGACCTG-CAGCATT
129 GCCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATGCCGAAGAACCTGACC-GACGGCATT
* * * * * * *
15533082 AGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACT
193 GGGGTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACT
*
15533146 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAAGCA
258 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCA
* * *
15533211 TTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT-ACTTGAAATGAGGACACTTTTTTC
322 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTC
*
15533275 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAATA
386 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * * * *
15533340 ATACAAGGATCACGTCTTCTAAGTTGGGGGCCAAAAATCCTTCCGAAAAGATTTTTAAAAATCTC
451 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
* * * * *
15533405 GAACCGC-AAAGAGTTTTAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCA
516 GAACC-CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
*
15533469 CGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
580 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
15533534 TATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
645 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * *
15533599 GGCCGGCGTAGTG----CCC-GCCACCAGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG
710 GGCCGACGTAGTGCCCACCCTCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAG
* * ** * * * *
15533659 TTCGTTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTGGCAGGATCGGCAGCACGTAAAG
775 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAG
*** ** * * *
15533724 GGGGACCCGATCGATCCCTACCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
840 GGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGTTGAGCACCCGCACGC
** * * * *
15533787 TAATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCC
1 TCGTTTCGTGGGTTAACTTAGGCATAC-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * ** *
15533852 CATTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCACATGTTGGGCTCGGGCATATGCTGGTG
65 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTG
** *** * * * * **
15533917 CCATATTTTTCTTCAACGGGGCACCATCGTCAGAGCGTCGCCGGAGAACCAAACCGACGGCATTG
130 CCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCAT-GCCGAAGAACCTGACCGACGGCATTG
* * * * * * * *
15533982 GGGATCCGACGATCGGGGGGGCC-GGGGGGTGTGGGCACATGATGTGTGATGGGTGCTGGTACGT
194 GGGTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTT
15534046 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
259 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
15534111 TGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAACTAGGGACACTTTTTTCAAA
324 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
15534176 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAAAA
389 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
15534241 CAAGGATCACGTCTACCAAGTTTGGGGCTAAAACT-CTTTCCGAAAAAATTTTAAGAAATCTCGA
454 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCGA
* * * *
15534305 ACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTTCCATGAAACTTCACGT
518 ACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
* * *
15534370 GAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAC
583 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * *
15534435 GTAGATGTACATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
648 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * * *
15534500 CGACGTAGTGCCCGCCCGT-CCGTCCTCCCGCTCGCTTCGTCGGTTGGCTTAGGCATACGGAGTT
713 CGACGTAGTGCCCACCC-TCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTT
* * *** * * * * * *
15534564 CATTCCCTA-TCTGAGATCGGATTGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGCACAAG
777 CATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGG
* * * * * * * * *
15534628 GGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCGCTGGCCGGCTGAG-AGCCTGCACGC
841 GGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGTTGAGCA-CCCGCACGC
* *
15534690 TTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTAACTTAGGCATAC-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * ** *
15534755 CAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGAATCAGGCATGTG-TCGGT
65 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCT-GGT
* * * * * *
15534819 GCCACATTTTTCTATGCCGGGGCACCATCGTCGGAG-A-ACC--AG-ACC--A--G-CAGCATTG
129 GCCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATGCCGAAGAACCTGACCGACGGCATTG
* *
15534874 GGGTTCTGACGATC-AGGGGGCCGGGGATGG-GT--G--C-T-A-GT---A---------G---T
194 GGGTTCTGGCGATCGAGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACT
* * * *
15534915 TGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAAAACTCATACCCGCTTAAAGAGCAT
258 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
15534980 TTGAGATTTTCCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
323 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
15535045 ACGGTCACAAATTCCTGTACACTTCGAGTTTTTATCTGAATTTTTTTGTGCATGCCAA-AAAATA
388 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-A
* ** * *
15535109 TACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCCAAAAAGTTTAGAAAATCCCG
452 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* * *
15535173 AATCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
517 AACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
*
15535238 TGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATA
582 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
15535303 TAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCACATCCTGTCTCTCTGG
647 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * *
15535368 CCGACATAGTGCCCGCCCGT-CCGCCCACTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
712 CCGACGTAGTGCCCACCC-TCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGT
* * * * * * *
15535432 TCATTCCCAGTCTAAGATCGGATCGGACC-ATGGGTTGCTGCAGTAGGATTGGCAGCATGCAGA-
776 TCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTGCGGCAGCAGGATCGACAGCATGCAGAG
* ** ** **
15535495 GGGGTCCCGGGCGATCCCCCCCTTGTGCATCCCT-CCCCTCTAGCCGGTTGAGTTCCCGCACGC
840 GGGGACCCGATCGATCCCCGGCTTGTGCAT-CCTGCCCCTCTAGCCGGTTGAGCACCCGCACGC
*
15535558 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTAACTTAGGCATAC-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
15535623 CAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCACATTCTGTGCTCGGGCATGTGCTGGTG
65 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTG
* ** * * * * * * *
15535688 TCATATTTTTCGTCGTCGGGCCACCATC-GCTGGAGCATCGTCGAAGAACTTGACCGGCGGCATT
130 CCGCATTTTTCTTTGTCGGGGCACCATCATC-GGAGCAT-GCCGAAGAACCTGACCGACGGCATT
* * * *
15535752 GGGGTT-TCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATATGTGATGGGTGCTGGTAC
193 GGGGTTCT-GGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCAC
*
15535816 TTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
257 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
15535881 TTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
322 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
**
15535946 AATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
387 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* ** * *
15536011 TACAAGGATCATGTCTACCAAGTTTGATGCCAAAACGCC-TTCTGAAAAAATTTTAAAAAATTCC
452 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCC
* * ** * * *
15536075 GAATCGC-AAAATGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
516 GAA-CCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* *
15536139 CGTGAAGGCTTAAGGGACCATTGTATGATTTTACAGGCCATAAAAATGGCATTGGCATGCAGAAA
580 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
15536204 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT
645 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * *
15536269 GGCCGGCGTAGTGACCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTTGCTTAGGCATAC-GAA
710 GGCCGACGTAGTGCCCACCCTCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAG-A
** * * * ** *
15536333 GTTCATTCGTAGTCTAAGATCAAATCAGACCGAGGGTT-CTGGTAGCAGGATCGGTAGCATGGAG
774 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GGCAGCAGGATCGACAGCATGCAG
* * * *
15536397 AGCGGGACCCGGTTGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGC
838 AGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGTTGAGCACCCGCACGC
* *
15536462 TCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
1 TCGTTTCGTGGGTTAACTTAGGCATAC-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
** * * ** *
15536527 CAGTCTAAGATCGGATTGGACTGAGGGTTGCGGTAGCACATGTTGGGCTTGGGCATGTGCTGGTG
65 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTG
*
15536592 CCGCATTTTTCTTTGTCGGGGCA-C--CATC---GC---CGGAA-AACCTGACCGACGGCATTGG
130 CCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATGCCGAAGAACCTGACCGACGGCATTGG
* *
15536647 GGTTCTGGCGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGCACTTG
195 GGTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTG
* *
15536712 GCCCTTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
15536777 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
15536842 GCTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
390 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
15536907 AAGGATCACGTCTACCAAGTTTTGGGCCAAAA-TCCTTCCGAAAAAATTTTCAAAAATCCCGAAC
455 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
* *
15536971 CCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGA
520 CCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
* *
15537036 AGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGA
585 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* *
15537101 AGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCA
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
15537166 ACGTAGTGCCCACCCTCCCACCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAT
715 ACGTAGTGCCCACCCTCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAT
* * * * *
15537231 TCCTAGTCTAAGATCAGACCAAACCGAGTGTTACGGCAGCAGGATCGACAGCAAGCAGAGGGGGA
780 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGA
* ** * * * * * * * *
15537296 CCCGACCGATCCATGGCTTGCGCATCTTGCCCCTCTGGCCAGCTGAGCGCCAGCACTC
845 CCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGTTGAGCACCCGCACGC
* * *
15537354 TCGTTTCATGGGTTAACTTAGGCATACATAGTTCA-TCCCTA-TCTAAACATACGGAGTTAATTC
1 TCGTTTCGTGGGTTAACTTAGGCATACA-AGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTC
* *
15537417 CCAGTCTAAGATCGGACCGGACCGATGGTTGCGGCAGCACATACTGGGCTCAGGCATGTGCTGGT
64 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGT
15537482 GCCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATTGCCGAAGAACCTGACCGACGGCATT
129 GCCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCA-TGCCGAAGAACCTGACCGACGGCATT
* * *
15537547 GGGGTTCTGACGATCGAGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGAAGGGTGCTGGCACT
193 GGGGTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACT
* *
15537612 TGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCAT
258 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
15537677 TTGAGATTTTATAGGTTTGCTGGCC-GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCA
323 TTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
15537741 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT-TTCATGCCAACAAAA
387 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAA
* *
15537805 ATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTTAGAAAAAATTTT-AAAAATCCC
451 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
* * *
15537869 GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
516 GAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
*
15537934 GTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
581 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
15537999 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGTATCCCGTCTCTCTG
646 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
15538064 GCCGACGTA--G---AGCCTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAG
711 GCCGACGTAGTGCCCACCCT-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAG
* *
15538124 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAACAGCATGCAGAG
775 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAG
15538189 GGGGACCCGATCGATCCCCGG
840 GGGGACCCGATCGATCCCCGG
15538210 GATGCACGCT
Statistics
Matches: 3874, Mismatches: 446, Indels: 196
0.86 0.10 0.04
Matches are distributed among these distances:
867 1 0.00
868 189 0.05
869 312 0.08
870 210 0.05
871 2 0.00
873 3 0.00
874 2 0.00
876 1 0.00
878 2 0.00
879 20 0.01
880 13 0.00
882 2 0.00
884 1 0.00
885 3 0.00
886 2 0.00
887 3 0.00
888 133 0.03
889 1 0.00
890 2 0.00
891 115 0.03
892 411 0.11
893 296 0.08
894 9 0.00
895 1 0.00
896 1 0.00
897 12 0.00
898 490 0.13
899 132 0.03
900 3 0.00
901 5 0.00
902 705 0.18
903 606 0.16
904 186 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
TCGTTTCGTGGGTTAACTTAGGCATACAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGC
CGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATGCCGAAGAACCTGACCGACGGCATTGGG
GTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC
CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCACCCTCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGAC
CCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGTTGAGCACCCGCACGC
Found at i:15538976 original size:26 final size:26
Alignment explanation
Indices: 15538940--15538992 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15538930 GTTAGCTTAG
*
15538940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15538966 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15538992 G
1 G
15538993 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:15539452 original size:26 final size:26
Alignment explanation
Indices: 15539402--15539454 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15539392 GTTGACTTCG
**
15539402 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15539428 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15539454 G
1 G
15539455 TTCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15539472 original size:462 final size:462
Alignment explanation
Indices: 15538574--15539477 Score: 1287
Period size: 462 Copynumber: 2.0 Consensus size: 462
15538564 ATAGAAAACG
15538574 AGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
1 AGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
15538639 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
66 AAAATGGCATTGGCACGCAGAAATAAGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCA
* * *
15538704 CGGCTTGCGCATCCTGTCACTCTGGCCAACATAGGGCCCGCCCGCCCGTCCGTCCGCTCATTTCG
131 CGGCTTGCGCATCCCGTCACTCTGGCCAACATAGGGCCCGCCCGCCCGCCCGCCCGCTCATTTCG
* * * *
15538769 TCGGTTGGCTTAGGCATACGGAGTTCATTCATAGTTTAAGATCAGACCAGACCGAGGGTTACGGC
196 TCGATTGGCTTAGGCATACGAAGTTCACTCATAGTCTAAGATCAGACCAGACCGAGGGTTACGGC
* * * * *
15538834 AGCAGGATCGGCAGCACGTAGAGGGGGACTCGACCGATCCCCGACTTGCACATGCCGCCCTCTGG
261 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCACATCCCGCCCTCTGC
* * *
15538899 CGGATTGAGAGCCCGCACACTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCT
326 CGGA-TGAGACCCCGCACACTCGTTTCATAGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
15538964 AAGCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAGTCCGAGGGTTACGCCGACACATGCTT
390 AAGCATACGGAGTCCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGCCGACACATGCTT
15539029 AAGGGACC
455 AAGGGACC
*
15539037 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
1 AGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
15539102 AAAATGGCATTGGCACGTC-GAAATAAGAAGATGTGCCTAAAGCCACCCACCACCCTATCGATCC
66 AAAATGGCATTGGCACG-CAGAAATAAGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCC
* * * * * *
15539166 ATGGCTTGCGCATCCCGTCTCTCTGG-CAGGCGTAGTGCCCGCCTG-CCGCCCGCCCGCTCATTT
130 ACGGCTTGCGCATCCCGTCACTCTGGCCA-ACATAGGGCCCGCCCGCCCGCCCGCCCGCTCATTT
* * * * **
15539229 TGTCGATTGGCTTAGGCATACGAAGTTCACTCCTAGTCTAAGATTAGACCAGACTGAGGGTTGTG
194 CGTCGATTGGCTTAGGCATACGAAGTTCACTCATAGTCTAAGATCAGACCAGACCGAGGGTTACG
* * ** *
15539294 GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGTGCATCCCGCCCCTT
259 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCACATCCCG-CCCTC
* * * *
15539359 TGCCCGG-TGAGCCCCCGCACGCTCGTTTCATAGGTT-GACTTCGGCATACGGAGTTCATTCCCG
323 TG-CCGGATGAGACCCCGCACACTCGTTTCATAGGTTAG-CTTAGGCATACGGAGTTCATTCCCA
* * * *
15539422 GTCTAAGCATATGGAGTTCATTCCCAATCTAAGTTCAGATCAGACCGAGGGTTACG
386 GTCTAAGCATACGGAGTCCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACG
15539478 GCAGCACATG
Statistics
Matches: 388, Mismatches: 48, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
461 1 0.00
462 220 0.57
463 163 0.42
464 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (462 bp):
AGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACGCAGAAATAAGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCACTCTGGCCAACATAGGGCCCGCCCGCCCGCCCGCCCGCTCATTTCG
TCGATTGGCTTAGGCATACGAAGTTCACTCATAGTCTAAGATCAGACCAGACCGAGGGTTACGGC
AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCACATCCCGCCCTCTGC
CGGATGAGACCCCGCACACTCGTTTCATAGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTCCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGCCGACACATGCTTA
AGGGACC
Found at i:15540357 original size:26 final size:26
Alignment explanation
Indices: 15540305--15540357 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15540295 GTTAACTTTG
* * *
15540305 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTATAA
15540331 GCATACGGAGTTCATTCCCACTATAA
1 GCATACGGAGTTCATTCCCACTATAA
15540357 G
1 G
15540358 TTCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTATAA
Found at i:15540979 original size:902 final size:903
Alignment explanation
Indices: 15539037--15541105 Score: 3363
Period size: 903 Copynumber: 2.3 Consensus size: 903
15539027 TTAAGGGACC
15539037 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
1 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
15539102 AAAATGGCATTGGCACGTCGAAATAAGAAGATGTGCCTAAAGCCACCCACCACCCTATCGATCCA
66 AAAATGGCATTGGCATGTCGAAATAAGAAGATGTGCCTAAAGCCACCCACCACCCTATCGATCCA
*
15539167 TGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCTGCCGCCCGCCCGCTCATTTTGT
131 TGGCTTGCGCATCCCGTCTCTCTGACAGGCGTAGTGCCCGCCTGCCGCCCGCCCGCTCATTTTGT
* * * * * *
15539232 CGATTGGCTTAGGCATACGAAGTTCACTCCTAGTCTAAGATTAGACCAGACTGAGGGTTGTGGTA
196 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTGTGGCA
15539297 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGTGCATCCCGCCCCTTTGC
261 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGTGCATCCCGCCCCTTTGC
* * * *
15539362 CCGGTGAGCCCCCGCACGCTCGTTTCATAGGTTGACTTCGGCATACGGAGTTCATTCCCGGTCTA
326 CCAGTGAGCCCCCGCACACTCGTTTCATAGGTTAACTTCGGCATACGGAGTTCATTCCCAGTCTA
* *
15539427 AGCATATGGAGTTCATTCCCAATCTAAGTTCAGATCAGACCGAGGGTTACGGCAGCACATGCTGG
391 AGCATACGGAGTTCATTCCCAATATAAGTTCAGATCAGACCGAGGGTTACGGCAGCACATGCTGG
* *
15539492 GCTCAAGCATGTGCTAGTGTCGTATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCGCCGGAG
456 GCTCAAGCATGTGCTAGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCGCCGGAG
* * * * *
15539557 AACCTGACTGGTGGCATTGGGGTTCCGGCGATCGAGGGGGTCGGGGTGGGTGTGTGCACATGATA
521 AACCTGACCGGTGACATTGGGGTTCCGACGATCGAGGGGGCCGGGGTGGGTGTGCGCACATGATA
15539622 TGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
586 TGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15539687 ACACCCCGTTAAAAAGCATTTGAGATTTTACAGGTTTGCTTCCAATAGCCACTAAAGTGTCTGAA
651 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGAA
*
15539752 CTGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
716 ATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* *
15539817 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAA
781 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
15539882 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAAAAGAAAATG
846 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACG
* *
15539940 AGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATA
1 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
15540005 AAAATGGCATTGGCATGTCGAAATAAAAAGATGTGCCTAAAGCCACCCACCACCCTATCGATCAA
66 AAAATGGCATTGGCATGTCGAAATAAGAAGATGTGCCTAAAGCCACCCACCACCCTATCGATCCA
* *
15540070 TGGCTTGCGCATCCCGTCTCTCTGACAGGCGTAGTGCCCGCCTGCCGCCCACCCACTCATTTTGT
131 TGGCTTGCGCATCCCGTCTCTCTGACAGGCGTAGTGCCCGCCTGCCGCCCGCCCGCTCATTTTGT
15540135 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTGTGGCA
196 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTGTGGCA
* * * *
15540200 GCAGGATCGGCAGCACGTAGATGGGGACCCGACCAATCCCTGGCTTGTGCATCCCGCCCTTTTGC
261 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGTGCATCCCGCCCCTTTGC
* * * *
15540265 CCAGTGAGCCCCCGCACACTCGTTTCGTGGGTTAACTTTGGCATCCGGAGTTCATTCCCAGTCTA
326 CCAGTGAGCCCCCGCACACTCGTTTCATAGGTTAACTTCGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
15540330 AGCATACGGAGTTCATTCCCACTATAAGTTCGGATCGGACCGAGGGTTGCGGCAGCACATGCTTG
391 AGCATACGGAGTTCATTCCCAATATAAGTTCAGATCAGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * *
15540395 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
456 GCTCAAGCATGTGCTAGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCGCCGGAG
15540460 AACCTGACCGAG-GACATTGGGGTTCCGACGATCGAGGGGGCCGGGGTGGGTGTGCGCACATGAT
521 AACCTGACCG-GTGACATTGGGGTTCCGACGATCGAGGGGGCCGGGGTGGGTGTGCGCACATGAT
15540524 ATGT-GTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
585 ATGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
15540588 CACACCCCCTTAAAAAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGA
650 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGA
15540653 AATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
715 AATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
*
15540718 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAA
780 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
15540783 AAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
845 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACG
* * *
15540842 AGTCGCCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATA
1 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
15540907 AAAATGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
66 AAAATGGCATTGGCATGTC-GAAATAAGAAGATGTGCCTAAAGCCACCCACCACCCTATCGATCC
* * * * * * * *
15540971 ACGGCTTGCGCATCCCATCTCTCTGACTGGCATAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTC
130 ATGGCTTGCGCATCCCGTCTCTCTGACAGGCGTAGTGCCCGCCTG-CCGCCCGCCCGCTCATTTT
* * * * *
15541036 GTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGACCGAGAGTTGCT-
194 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTG-TG
15541100 GCAGCA
258 GCAGCA
15541106 CATGCTAGGC
Statistics
Matches: 1077, Mismatches: 85, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
901 1 0.00
902 457 0.42
903 617 0.57
904 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (903 bp):
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGTCGAAATAAGAAGATGTGCCTAAAGCCACCCACCACCCTATCGATCCA
TGGCTTGCGCATCCCGTCTCTCTGACAGGCGTAGTGCCCGCCTGCCGCCCGCCCGCTCATTTTGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTGTGGCA
GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGTGCATCCCGCCCCTTTGC
CCAGTGAGCCCCCGCACACTCGTTTCATAGGTTAACTTCGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCCAATATAAGTTCAGATCAGACCGAGGGTTACGGCAGCACATGCTGG
GCTCAAGCATGTGCTAGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCGCCGGAG
AACCTGACCGGTGACATTGGGGTTCCGACGATCGAGGGGGCCGGGGTGGGTGTGCGCACATGATA
TGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGAA
ATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACG
Found at i:15541944 original size:26 final size:26
Alignment explanation
Indices: 15541915--15541967 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15541905 GTTGACTTTG
*
15541915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
15541941 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
15541967 G
1 G
15541968 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:15542854 original size:26 final size:26
Alignment explanation
Indices: 15542818--15542870 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15542808 GTTGACTTTG
*
15542818 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15542844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15542870 G
1 G
15542871 ATCGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15543177 original size:903 final size:899
Alignment explanation
Indices: 15541145--15543593 Score: 3555
Period size: 903 Copynumber: 2.7 Consensus size: 899
15541135 GTATTTTTCT
* * * * * *
15541145 TCGCCGTAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGCTTCCGGCAATCGGGGGGCCCGGC
1 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
15541210 GTGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
66 GTGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
15541275 TCATCAAACCATGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAG
131 TCATCAAACC-TGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * ** *
15541340 TAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAACAGTCACAAAATCTTGTACACTTCG
195 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAG
* *
15541405 AATTCTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAC-GAGGATCATGTCTACCAAGTTTG
260 AGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAG-GGATCATGTCTACCAAGTTTG
* * * *
15541469 GGGCTAAAAGTATTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCATG
324 GGGCCAAAACT-CTTCCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAA-GTTTCAAAAATCATG
* *
15541534 AAAAAAAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
386 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
15541599 ATTTACAAGCCATAAAAATGGCATTGGCACGTCGAAATAAGAAGATGTGCCTAAACCCACCCACC
451 ATTTACAAGCCATAAAAATGGCATTGGCACGTCGAAATAAGAAGATGTGCCTAAACCCACCCACC
* * * * *
15541664 ATCCTATCGACCCATGGCTTACGCATCCCGTCTCTCTAGCAGGCGTAGTGCCCGGCTGCCCGCCC
516 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCTG-CCG-CC
* * *
15541729 GCCCGCTCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAA
579 GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAA
* * * *
15541794 TTGAGGGTTGTGGCAGCAGGATTGGCAGCACATAGAGGAGGACCCGACCGATCCCCGGCTTGTGC
644 CTGAGGGTTGTGGCAGCAAGATCGGCAGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGTGC
* * *
15541859 ATCCCGCCCCTTTGCCCGGCTGTGCCCCCACACGTTCATGTCATCGGTTGACTTTGGCATACGGA
709 ATCCCGCCCCTTTGCCCGGCTGAGCCCCCACACGCTAATGTCATCGGTTGACTTTGGCATACGGA
*
15541924 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCAAGGGTTG
774 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCAAGGGTTA
* *
15541989 CAGCAGCACATGCTGGGCTCGATCATGCGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
839 CAGCAGCACATGCTGGCCTCGAGCATGCGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
** *
15542050 TCGCCGGAGCATCGTCGGAGAACCTGACCCACGGCGTTGGGGTTCCGACGATCGGGGGGGCCGGG
1 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
15542115 GTGGGTGTGCACACATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
66 GTGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
15542180 TCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAG
131 TCATCAAACC-TGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAG
15542245 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAG
195 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAG
* * * *
15542310 AGTTCTTAGCTGAATGTTTTTGTGCATGCGAAAAAAAATACAGGGATCACGTCTACCAAGTTTGG
260 AGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGG
* * *
15542375 GGCCAAAACTCTTACCGAAAAAATTTTAAAAAATCTCAAACAGTGAAAAGTTTCAAAAATCATGG
325 GGCCAAAACTCTT-CCGAAAAAATTTTAAAAAATC-CGAACCGT-AAAAGTTTCAAAAATCATGA
*
15542440 AAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
387 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
15542505 TTTACAAGCCATAAAAATGGCATTGGCACGTCGAAATAAGAAGATGTGCCTAAACCCACCCACCA
452 TTTACAAGCCATAAAAATGGCATTGGCACGTCGAAATAAGAAGATGTGCCTAAACCCACCCACCA
*
15542570 CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTAGGCGTAGTGCCCGCCTGCCGCTCGC
517 CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCTGCCGC-CGC
* *
15542635 CCACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACT
581 CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACT
* * * * **
15542700 GAGGGTTGTGGCAGTAAGATCGGCAGCACGCCGAGGGGGACCCGGTCGATCCCCGGCTTGTGCAT
646 GAGGGTTGTGGCAGCAAGATCGGCAGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGTGCAT
* * * * *
15542765 CCCGCCCCTTTGCCCGG-TGAGCCCTCGA-ATGCTAATTTCGT-GTGTTGACTTTGGCATATGGA
711 CCCGCCCCTTTGCCCGGCTGAGCCC-CCACACGCTAATGTCATCG-GTTGACTTTGGCATACGGA
* * * *
15542827 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGGCCGAA-GGT
774 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCA-GACC-AAGGGT
* * * * * * *
15542890 TACGGTAGCAGATGCTGGCCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCC
837 TACAGCAGCACATGCTGGCCTCGAGCATGCGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
* * *
15542953 TCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGG
1 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
15543018 GTGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCC
66 GTGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
15543083 TCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATCTGAGATTTTACAGGTTTGCTGCCAA
131 TCATCAAACCT-GAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
15543148 TAGCCACTAAAGTGTTTGAAATGGGGACACTTTGTTAAAATGGTCACAAAATATTGTACACTTAG
195 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAG
* * * *
15543213 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCATGTCTATCAAGTTTGG
260 AGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGG
* ** * *
15543278 GGCCAAAACTCCTTCTGGAAAAAA-TTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCGTA
325 GGCCAAAACT-CTTC-CGAAAAAATTTTAAAAAATCC-GAA-CCGTAAAAGTTTCAAAAATCATG
* * * *
15543342 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGGAGTCTTAAGGGACCATTTTATGA
386 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * **
15543407 ATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAGATATGAAGATGTGCCTCAACCCACCTTC
451 ATTTACAAGCCATAAAAATGGCATTGGCACGTC-GAAATAAGAAGATGTGCCTAAACCCACCCAC
* * * ** * *
15543471 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGTATAGTGCCAGCCCGCTCGCC
515 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCTGC-CGCC
** * * *
15543536 TGCCCGCTCGTTTCATCGGCTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATC
579 -GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
15543594 GGCCGGTATA
Statistics
Matches: 1390, Mismatches: 137, Indels: 35
0.89 0.09 0.02
Matches are distributed among these distances:
902 5 0.00
903 647 0.47
904 210 0.15
905 523 0.38
906 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
GTGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGA
GTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGG
GCCAAAACTCTTCCGAAAAAATTTTAAAAAATCCGAACCGTAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACGTCGAAATAAGAAGATGTGCCTAAACCCACCCACCACCCT
ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCTGCCGCCGCCCGCT
CGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGG
TTGTGGCAGCAAGATCGGCAGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGTGCATCCCGC
CCCTTTGCCCGGCTGAGCCCCCACACGCTAATGTCATCGGTTGACTTTGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCAAGGGTTACAGCAGC
ACATGCTGGCCTCGAGCATGCGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
Found at i:15546100 original size:26 final size:26
Alignment explanation
Indices: 15546064--15546116 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15546054 GTTGACTTAG
*
15546064 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15546090 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15546116 G
1 G
15546117 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:15546693 original size:871 final size:878
Alignment explanation
Indices: 15545228--15547600 Score: 3112
Period size: 871 Copynumber: 2.7 Consensus size: 878
15545218 TAGGCTTACA
*
15545228 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCATATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
15545293 ATGTGCTGGTGTCTCATTTTTCTTCGTCGGGGCACCATCGCTGAAGAACCTGGCCGACGGCATTG
66 ATGTGCTGGTGCCTCATTTTTCTTCGTC-GGGCACCATTGTTGGAGAACCTGACAGACGGCATTG
* * *
15545358 GGGTTCCGACGATCGGGGGGCCGAGGGG-GTGCGCACATGATGTGCGATAGGTGCTGGTACTTGG
130 GGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
15545422 CCATTATATT-GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG-TGCATTT
195 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAT-CATTT
* * *
15545485 GAGATTTTACAGGTTTACTGCCAG-AGGCCATTAAAGTGTTTGAAATGGAGACAC-TTTTTCAAA
259 GAGATTTTACAGATTTGCTGCCAGTA-GCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAA
* *
15545548 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
323 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATA
** * * ** *
15545613 CAAGGATCGTGTCTACCAAGTTTTGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
388 CAAGGATCACGTCTTCCAAGTTTCGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAA
* * * *
15545678 CCA-CAAAAAGTTTCAAATATCATGAAAAATAGAAAACAAGTCGTCTAGCCATGAAACTTCACGT
453 -CAGCAAAGAGTTTGAAA-ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
15545742 GAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
516 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * * **
15545807 GGAGATGTTCCTAAACCCACCTAAAACCCTATCGATCCA-TGGCTTGTGCATCCTTTCTCTCTGC
581 GAAGATGTGCCTAAACCCACCTAAAACCCTATCAATCCACT-GCTTGCGCATCCCGTCTCTCTGC
* *
15545871 CCAGCGTA-CTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCT
645 CCAGCGTAGCTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCC
* ** * * * * * *
15545935 AGTCTAAGATTGGATTGGA-TCAAGGGTTGCGATAGCAGGATCGGCAGCATG-CAGAGGG-GG-A
710 AGTCTAAGATCGGACCGGACT-AAGGGTTACGACAACAGGATCGACAACAGGACAGAGGGTGGCA
* * * ** * * ** *
15545996 CCCGG-CCGA-CCCCCGACTTGC-GCATCCCCCCCTTCT-G-GCCGGCACGCTCGTTTCT-TGGG
774 ACAGGACCGAGCCCACGAC-AACAGAATCCCCACCGGCTAGCGCCCGCACGCTCGTTT-TGTGGG
15546055 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
837 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
15546097 GAGTCCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCACATGTTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
15546162 ATTTACTGGTGCCACATTTTTCTTCGTC-GG-ACCATTGTTGGAGAACCTGACAGACGGCATTGG
66 ATGTGCTGGTGCCTCATTTTTCTTCGTCGGGCACCATTGTTGGAGAACCTGACAGACGGCATTGG
* *
15546225 GGTTCTGATGATCGGGTGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
131 GGTTCCGACGATCGGG-GGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
15546290 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGATCATTT
194 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGATCATTT
* *
15546355 GAGATTTTACAGATTTGCTGCCAGTTGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAAT
259 GAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAT
*
15546420 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAC
324 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAC
*
15546485 AAGGATCACGTCTTCCAAGTTTCGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAAC
389 AAGGATCACGTCTTCCAAGTTTCGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAAC
* * * *
15546550 TGCAAAGAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGA
454 AGCAAAGAG-TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
15546615 AGGCTTAAGGGACCATTGTAGGAATTTACAAGCCACAAAAATGGCATTGGCATGGAGAAATATGA
518 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
** * * *
15546680 AGATGTGCCTAAACCCACCTACCACCCTATCAATCCACTGCTTGCGTATCCCGTCTCTCTGGCCG
583 AGATGTGCCTAAACCCACCTAAAACCCTATCAATCCACTGCTTGCGCATCCCGTCTCTCTGCCCA
* * *
15546745 GCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGTGTTCATTCCC
648 GCGTA--G-CTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCC
* * * *
15546810 AGTCTAAGATCGGACCGGACTGAGGGTTACGGCAACAGGATTGACAACAGGACTGAGGGTTACGG
710 AGTCTAAGATCGGACCGGACTAAGGGTTACGACAACAGGATCGACAACAGGACAGAGGG-T--GG
* *** * ** *
15546875 CAACAGGACTGAGGGTTACGGCAACAGAATGGCTACCGGCTGAGCGCCCGCACGCTCGTTTTGTG
772 CAACAGGACCGA-GCCCACGACAACAGAATCCCCACCGGCT-AGCGCCCGCACGCTCGTTTTGTG
* *
15546940 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATG
835 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
15546984 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCACATGCTGGGTTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * **
15547049 AAGTGCTGGTGCGTTATTTTTCTTTGCCGGGGCACCATCACCAGAGCATCGTCAGAGAACCTGAC
66 ATGTGCTGGTGCCTCATTTTTCTTCGTC-GGGCACCAT----------T-GTTGGAGAACCTGAC
* * * *
15547114 TGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGAGGAGGTGTGCGCACATGATGTGCGATGG
119 AGACGGCATTGGGGTTCCGACGATC-GGGGGG-CGG-GGGGGTGTGCGCACATGATGTGCGATGG
* ** *
15547179 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCT
181 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * * * *
15547244 TTAAAAAGCCTTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGAC
246 TTAAAGATCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
* * *
15547309 ACTTTTTTCAAATGGCCACAAATTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATA
311 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
* *
15547374 CCAAAAAAAATACAAAGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
376 CCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTCGGGCCAAAACTCCTTCTGAAAAAATTTTA
*
15547439 AAAAATCCCGAACAGCAAAGAGTTTGAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGA
441 AAAAATCCCGAACAGCAAAGAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
15547504 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
506 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
15547569 ACAGAAATATGAAGATGTGCCTAAACCCACCT
571 GCAGAAATATGAAGATGTGCCTAAACCCACCT
15547601 TATATTGGCC
Statistics
Matches: 1306, Mismatches: 153, Indels: 58
0.86 0.10 0.04
Matches are distributed among these distances:
866 42 0.03
867 5 0.00
868 6 0.00
869 126 0.10
870 100 0.08
871 296 0.23
872 7 0.01
875 88 0.07
876 7 0.01
880 2 0.00
881 4 0.00
882 3 0.00
883 1 0.00
884 11 0.01
886 2 0.00
887 135 0.10
889 2 0.00
890 5 0.00
900 1 0.00
901 170 0.13
902 293 0.22
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (878 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCTCATTTTTCTTCGTCGGGCACCATTGTTGGAGAACCTGACAGACGGCATTGG
GGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGATCATTTGA
GATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAA
GGATCACGTCTTCCAAGTTTCGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACAG
CAAAGAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTGCCTAAACCCACCTAAAACCCTATCAATCCACTGCTTGCGCATCCCGTCTCTCTGCCCAGCG
TAGCTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA
AGATCGGACCGGACTAAGGGTTACGACAACAGGATCGACAACAGGACAGAGGGTGGCAACAGGAC
CGAGCCCACGACAACAGAATCCCCACCGGCTAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACG
Found at i:15546880 original size:21 final size:21
Alignment explanation
Indices: 15546854--15546901 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
15546844 ACAGGATTGA
15546854 CAACAGGACTGAGGGTTACGG
1 CAACAGGACTGAGGGTTACGG
15546875 CAACAGGACTGAGGGTTACGG
1 CAACAGGACTGAGGGTTACGG
15546896 CAACAG
1 CAACAG
15546902 AATGGCTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.21, G:0.35, T:0.12
Consensus pattern (21 bp):
CAACAGGACTGAGGGTTACGG
Found at i:15546987 original size:26 final size:26
Alignment explanation
Indices: 15546951--15547003 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15546941 GTTGACTTAG
*
15546951 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15546977 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15547003 G
1 G
15547004 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15549512 original size:26 final size:26
Alignment explanation
Indices: 15549483--15549535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15549473 GTTGACTTAG
* *
15549483 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15549509 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15549535 G
1 G
15549536 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15550129 original size:893 final size:889
Alignment explanation
Indices: 15548188--15551150 Score: 3831
Period size: 890 Copynumber: 3.3 Consensus size: 889
15548178 CTAGTGCCGT
* * * * *
15548188 ATTTAAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
1 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGT-TT
* *
15548253 GCCATGAAACTTCACATGAAAGCTTAAGGGACC---------A--T--AAGCCATAAAAATGGCA
65 GCCATGAAACTT-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
* * *
15548305 TTGGCACACAGAAATATGAAGATGTGCCTAGACACACCTACCACCCTATCGATCCACGGCATGCA
129 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * * * * *
15548370 CATCCCGTCTCTCTGGTCGGCGTTGTGCCCGCTCGCCCGCCCGCT---T-GTTTCATCGATTGGC
194 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
* * * * * *
15548431 TTAGGCATA-TGAAGTTCATTCCTAATCTAAGATTAGACCAGACCGAGGGTTGCTGCAGTAGGAT
259 TTAGGCATACAG-AGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCAGCAGTAGGAT
* * * * * * *
15548495 CGGCAGCACGTAAAAGGGGACCCGATCAATCACCGGTTTACGCATCCCGGCTCTCTGGCCGGCTG
323 CGGCAGCACGCAGAGGGGGACCCGATCAATC-CCGGCTTACGCATCCCGCCCCTCTGGCCGGCTA
* ** *
15548560 AGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
387 AGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
* *
15548625 CGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGG
452 CGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * * * * *
15548690 GCATTTGCTGGTGCCGCATTTTTCTTCGTCGGAGCATCA-C-CGGAGAACCTGACTGGTGGTATT
517 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCGGAGAACCTGACCGGTAGCATT
* * * *
15548753 AGGGTTTCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACT
582 GGGGTTCCGACGATCGGGGGGGTCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACT
15548818 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
647 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * **
15548883 TTGAGATTTTACAAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGTAGACACTTTTTTCAA
712 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
15548948 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGGATTGCCAAAAAAAA
777 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAAAAAAAA
* *
15549012 TACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCCGAAAAA
841 TACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * * *
15549061 ATTTTAAAAAATCCCAAAACGTAAAAATTTTTGAAAATCGTGCAAAATAGAAAACAAGTCGTGTT
1 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGT-TT
* * *
15549126 GCCATGAAACTTTACGTGAAGGCGTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCA
65 GCCATGAAAC-TTACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
** * * *
15549191 TTGGCACGTAGAAATATGAAGATCTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCA
129 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * * *
15549256 CATCCCGTCTCTCTCGTCGACGTAGTGCCCGCCCACCCGCCCGCTCGCTCGTTTCGTTGGTTGGC
194 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
* * * * * * *
15549321 TT-TGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGCAGTAGCAAGATT
259 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCAGCAGTAGGATC
* * ** *
15549385 GGCAGCACACAGAGGGGGACCCGATCGATCCTCGGCTGGCGCATTCCGCCCCTCTGGCCGGCTAA
324 GGCAGCACGCAGAGGGGGACCCGATCAATCC-CGGCTTACGCATCCCGCCCCTCTGGCCGGCTAA
* * * * *
15549450 GCGCCTGCATGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC
388 GCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
15549515 GAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAAATGCTGGACTCGGG
453 GAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGG
* *
15549580 CATGTG-TCGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGATAGCAT
518 CATGTGCT-GGTGCCGCATTTTTCTTCATCGGGGCACCATCG-CGGAGAACCTGACCGGTAGCAT
* * ** * * * *
15549644 TGGGGTTCCGGCGATCGGGGGGGTCAAGGGGGTGTGCATACATGAAGTGGGATGGGCGATGGAAC
581 TGGGGTTCCGACGATCGGGGGGGTCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAAC
* *
15549709 TTGGCCCTTATATTTG-CCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCA
646 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
15549773 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCT-AGAATGGGGACACTTTTTTC
711 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTC
*
15549837 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
775 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC--AAAAA
*
15549902 AAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
838 AAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15549954 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
1 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGT-TT
* ***
15550019 GCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAATTTATAAAAATGGCA
65 GCCATGAAACTT-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
** * * *
15550084 TTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
129 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * *
15550149 CATCCCGTCTCTCTGGCCGACGTAGTGTCCGTCCGCCCG--C-C-CGCTCATTTCGTCGGTTGGC
194 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
* * * **
15550210 TTAGGCATACAGAGTTCATTCCCTGTCGAAGATTGGACTGGATTGAGGGTTGCAGCAGTAGGATC
259 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCAGCAGTAGGATC
* ** * *
15550275 GACAGCACGCAGAGGGGGACCCGGCCAATCCCCGACTTACGCATCCCGCCCCTCTAGCCGGCTAA
324 GGCAGCACGCAGAGGGGGACCCGATCAAT-CCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAA
15550340 GCGCCCGCACG-TTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
388 GCGCCCGCACGCTT-GTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
* ** *
15550404 CGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACTAAGGGTTGC-GACAGCACATGTTGGGCAT
452 CGAAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCAG-CAGCACATGCTGGGC-T
* * * *
15550467 -GGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGAACCTAACCGGCAG
514 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG-CGGAGAACCTGACCGGTAG
* * * *
15550531 CATTGTGGGTTCCGACAATCGGAGGGG-CCGGTGGGGTGTGCGCACATGATGTTCGATGGGTGCT
578 CATTG-GGGTTCCGACGATCGGGGGGGTCAGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
15550595 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
641 GGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
15550660 GAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCAGTAAAGTGTCTGAAATGGGGACACTTT
706 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
15550725 TTTCAAATGGTCACAAAATCTTGTACACTACAAGTTTTTGGCTGATTTTTTTTGTGCATGCCAAC
771 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
*
15550790 AAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
836 AAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15550844 ATTTTAAAAAATCCCGAACCGTTAAAAGTTTTTAAAAATCCGGTGAAAAATAGAATAAACGATGT
1 ATTTTAAAAAATCCCGAACCGTAAAAAG-TTTTAAAAAT-C-GTGAAAAATA-AA-AAACGA-GT
*
15550909 GCGTTTGCCATG-AACTGTATGTGAAGGCTTAAGGGACCATTGTATGAAAGTTTACAAAGCCACT
60 -CGTTTGCCATGAAACT-TACGTGAAGGCTTAAGGGACCATTGTATG-AA-TTTA-AAAGCCA-T
*
15550973 AGAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCCCTATCTGA
119 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC-A-CCCTATC-GA
*
15551038 TCCACGGCTTTGCCGCATCTCCCGTCTCTCTGGCCGACGTAGTGCCCGCGCCGCCC-CTCCGC-C
181 TCCACGGC-TTG-CACA--TCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CCGCCCGC-CCGCTC
*
15551101 TGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTCCATTCCCAGTCTAA
240 -GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
15551151 AATCGAGTCA
Statistics
Matches: 1808, Mismatches: 217, Indels: 92
0.85 0.10 0.04
Matches are distributed among these distances:
873 83 0.05
874 2 0.00
882 1 0.00
884 1 0.00
886 114 0.06
888 2 0.00
889 270 0.15
890 368 0.20
891 232 0.13
892 251 0.14
893 267 0.15
894 2 0.00
895 37 0.02
896 12 0.01
897 7 0.00
898 4 0.00
899 49 0.03
900 1 0.00
901 7 0.00
902 10 0.01
903 2 0.00
904 4 0.00
906 28 0.02
907 6 0.00
909 1 0.00
910 2 0.00
911 45 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (889 bp):
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTTTG
CCATGAAACTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTT
AGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCAGCAGTAGGATCGG
CAGCACGCAGAGGGGGACCCGATCAATCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCG
CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAA
GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCGGAGAACCTGACCGGTAGCATTGGGG
TTCCGACGATCGGGGGGGTCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
GGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
Found at i:15550409 original size:26 final size:26
Alignment explanation
Indices: 15550373--15550425 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15550363 GTTGACTTAG
*
15550373 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15550399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15550425 G
1 G
15550426 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15553151 original size:712 final size:711
Alignment explanation
Indices: 15551760--15553242 Score: 2210
Period size: 712 Copynumber: 2.1 Consensus size: 711
15551750 ACCACCTTAA
* *
15551760 GTTTTGTCGGTTGGCTTAGGCATAGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTT
1 GTTTCGTCGGTTGGCTTAGGCATAGGAGTTCATTCCAAGTCTAAGATCGGACCGGACAGAGGGTT
* * *
15551825 ACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCT
66 ACGGCAGCACATGCTAGGCTCGAGCATGTGCTAGTACCACATTTTTCTTCGTCGGGGCACCATCT
* * ** *
15551890 TCGGAGCATCGTCGGAGAACCTGACCAGTGACATTGGGGTTCCGACGATCCGGGGGGCCAGGGGG
131 CCAGAGCATCACCGGAGAACCTGACCAGTGACATTGGGGTTCAGACGATCCGGGGGGCCAGGGGG
** * *
15551955 GTGTGTGCACATGATGTCCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTAT
196 GTGTCCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
15552020 CAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAGCAGTAGC
261 CAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTAGCAGTAGC
* *
15552085 CGTTAAAGAGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
326 CATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* **
15552150 TTTAGCTGAATTTTTTAGTGCATGGCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
391 TTTAGCTGAATTTTTTAGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGCCCC
*
15552215 AAAAATCATTCCAAAAAATTTTAAAAAATCCTGAATCACAAAAAGTTTCAAAAATCATGAAAAAT
456 AAAAATCATTCCAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAAT
* *
15552280 AAAAAACAAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAAAAGACCATTGTATGAATTTAC
521 AAAAAACAAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAAAGACCATTGTATGAATTTAC
*
15552345 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
586 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
15552410 TCGATCCATGGCTTGCGCAGCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCG-T-CCGCTT
651 TCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCCCGCTC
* *
15552469 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACATAGGGT
1 GTTTCGTCGGTTGGCTTAGGCATA-GGAGTTCATTCCAAGTCTAAGATCGGACCGGACAGAGGGT
** * **
15552534 TGTGGCAGCACATGCTGGGCTCGAGCATGTGCTAGTACCGTATTTTTCTTCGTCGGGGCACCAT-
65 TACGGCAGCACATGCTAGGCTCGAGCATGTGCTAGTACCACATTTTTCTTCGTCGGGGCACCATC
* *
15552598 TACCAGAGCATCACCGGAGAACTTGACCGACG-G-CGTTGGGGTTCTAG-CGAT-CGGAGGGGCC
130 T-CCAGAGCATCACCGGAGAACCTGACC-A-GTGACATTGGGGTTC-AGACGATCCGG-GGGGCC
*
15552659 AGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTAT
190 AGGGGGGTGTCCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTAT
15552724 CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCT-G
254 CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTAG
*
15552788 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
319 -CAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
15552853 TTTC-AGTTTTTAGGTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAG
383 -TTCGAGTTTTTAGCTGAATTTTTTAGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
* * * * * *
15552917 TTTGGCCCCGAAAATCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAATACGTTTCAAAAAT
447 TTTGGCCCCAAAAATCATTC-CAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAAT
* * * *
15552982 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAAGGACCATTGT
511 CATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAAAGACCATTGT
15553047 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
576 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
15553112 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTC
641 TACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT-
15553177 GCCCGCTC
705 -CCCGCTC
* * * * * **
15553185 GTTCCATTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGATTAGACCGGAC
1 GTTTCGTCGGTTGGCTTAGGCATA-GGAGTTCATTCCAAGTCTAAGATCGGACCGGAC
15553243 TGAGAGTTGC
Statistics
Matches: 695, Mismatches: 65, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
709 27 0.04
710 187 0.27
711 201 0.29
712 224 0.32
713 1 0.00
716 55 0.08
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (711 bp):
GTTTCGTCGGTTGGCTTAGGCATAGGAGTTCATTCCAAGTCTAAGATCGGACCGGACAGAGGGTT
ACGGCAGCACATGCTAGGCTCGAGCATGTGCTAGTACCACATTTTTCTTCGTCGGGGCACCATCT
CCAGAGCATCACCGGAGAACCTGACCAGTGACATTGGGGTTCAGACGATCCGGGGGGCCAGGGGG
GTGTCCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTAGCAGTAGC
CATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTAGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGCCCC
AAAAATCATTCCAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAAT
AAAAAACAAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAAAGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCCCGCTC
Found at i:15553402 original size:26 final size:26
Alignment explanation
Indices: 15553363--15553415 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15553353 GTTGACTTAG
*
15553363 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCAAGTCTAA
* *
15553389 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAATTCATTCCAAGTCTAA
15553415 G
1 G
15553416 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCAAGTCTAA
Found at i:15564570 original size:26 final size:26
Alignment explanation
Indices: 15564540--15564592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15564530 GTTGACTTAG
* *
15564540 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15564566 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15564592 G
1 G
15564593 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15565956 original size:905 final size:886
Alignment explanation
Indices: 15561968--15567593 Score: 6503
Period size: 882 Copynumber: 6.4 Consensus size: 886
15561958 GCCATAAAAA
* * *
15561968 TGGGCTCGGGCATGTGCTGTTGCCGCATTTTTCTTCGCCGGGGCAACATCGCCGGAGCATCGTCG
1 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC--CG
* * * *
15562033 GAGAACC-GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGTGGGGGATGTG-GTAACA
64 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-C-CG-GGGGG-TGTGCG-CACA
* * *
15562096 TGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
124 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
** *
15562161 AACTCACACCGTCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGT
189 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
15562226 ATGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
254 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
15562291 TGTTTTGTCCATGCCAACAAAAGTACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAATCCTTC
319 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* * *
15562356 TGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGA
384 TGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGA
* * * *
15562420 GTCATCTTGTCATGAAACTTCACGCGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAA
448 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
15562485 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCAC
513 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * ** * * * *
15562550 GGCTTGCGCATACTGCCTATCTGGCCGGTGTAGCGGCCG-CCGCCCGCCCGCTCGTTTCATCGGT
578 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGT
* * * * * ** * *
15562614 TGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGAACACATCAAACTGAA-GGTTG--CAGCA-
643 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-CAAGGGTTGTACGGCAG
* * * * *
15562675 -AT--AGAGGGGGACCCGACTGATCCCCGACTTGCACATCCCGCCCCTCTGGTCGACTGAGCGCC
707 CATGCAAAGGGGGACCCGAC-GAT-CCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
15562737 TGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATACGGATT
770 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAC-GAGT
* * * * ** * * *
15562802 TCATTCTCAATGTAATATCAGACC---GGA-TCGAGGGTTTCGGCAGCACATGT
833 TCATTCCCAGTCTAAGATTGGACCAAATGACGCGAGGGTTACGGCAGCACATGT
* * * *
15562852 TAGGCTCGGGCATTTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCG
1 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC--CG
* * * * *
15562917 GAGAACCTGATCGATGGCATTAGGGTTCCGACGATCGGGGGGTCGAGGGGGTGTGCGCACATGCT
64 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGAT
* *
15562982 GTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACT
128 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
15563047 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
193 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15563112 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATGTTT
258 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
15563177 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-TCGA
323 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-GA
* * * *
15563241 AAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCG
387 AAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
15563306 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
452 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
15563371 GGCATTGGCACGTAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
517 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
15563436 TGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGT
582 TGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCTCCCGCCCGCTCGTTTCGTCGGT
* * *** * *
15563501 TGGCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCAGTTTGGACCGAGGGTTGCTACAGCAA
643 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG-TACGGC-A
* * * **
15563566 G-ATCGACAGCACCCAGAGTGGGACCCAGCCCATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCG
706 GCAT-G-CA--A---AG-G-GGGACCC-GACGATCCCGA-CTTACGCATCCCGCCCCTCTGGCCG
* * *
15563630 ACTAAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA---T---
760 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
**
15563683 -T-C-----C--T---AGTCTAAGATTGG----AATGGAC-CGAGGGTTGTGGCAGCACATGT
825 ATACGAGTTCATTCCCAGTCTAAGATTGGACCAAAT-GACGCGAGGGTTACGGCAGCACATGT
* *
15563729 TGGGCTCGGGCATGTGCTTGTGCCGCATTTTTCTTCGCCGGGGCACCATCGACGGAGCATCACCG
1 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT--CCG
* ** *
15563794 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGCACGCACATAATG
64 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
*
15563859 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTC
129 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15563924 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15563989 ATGTGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15564054 TG-GCCATGCCAACAAAAGTACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
324 TGTG-CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAA
* * * * * *
15564118 AAAATTTAAAAAAATCCCCAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCAT
388 AAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15564183 CTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
453 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15564248 GCATTGGCAGGTAGAAATATGAAGATGTGCCTCAACCCACTTACCACCCTATCGATCCACGGCTT
518 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
15564313 GCGCATCCCGTCTCTCTGGCC-AGCTTAGTGCCCGCCCTCCCGTCCGCTCGTTTCGTCGGTTGGC
583 GCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGC
*
15564377 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCAAGGGTTGTAGCAGCAAGATC
647 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTA-C-G---G--C
* * * * * * *
15564442 GGCAGCTCGCAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCACACCCCTCTGGCCGGCTAA
705 AGCA--T-GCAAAGGGGGACCCGA-CGATCCCGA-CTTACGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
15564507 GCGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATAC
765 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATA-
** *
15564572 CGAGTTCATTCCCAGTCTAAGATCAGACCAAAT----CGAGGGTTGCGGCAGCACATGT
828 CGAGTTCATTCCCAGTCTAAGATTGGACCAAATGACGCGAGGGTTACGGCAGCACATGT
* * *
15564627 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTTG
1 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC--CG
* * *
15564692 GAGAACC-GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGGCCGGGTGGTGGGTGTGCACAC
64 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGGGCC--G-GG-GGGTGTGCGCAC
* *
15564756 ATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATGAAACCTCGA
123 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
15564820 GAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATG
188 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
15564885 TCAGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGCT-CACTTCGAGTTTTTGGCTGA
253 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAGTTTTTAGCTGA
* * *
15564949 ATTTTTTTATGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACA-CC
317 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCC
* * *
15565013 TTCCT-AAAAAAGTTTAAAAAATC-CTGAACCGT-AAAAAGTTTTGAAAATCGTAAAAAATAGAA
381 TT-CTGAAAAAATTTTAAAAAATCTC-GAACC-TCAAAAAGTTTCGAAAATCGTGAAAAATAGAA
* *
15565075 AACAAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
443 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
**
15565140 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
508 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
15565205 TCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGCGCCCGCCCTCCCGCCCGCCCGTTCGT
573 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCG--C--TCGT
* * * * **
15565270 TTCATCGATTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGG-T-
634 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG
*
15565333 TACGGCAGCATGCAAAGGGGGACTCGACAGATCCTCGACTTACGCATCCCGCCCCTCTGGCCGGC
699 TACGGCAGCATGCAAAGGGGGACCCGAC-GATCC-CGACTTACGCATCCCGCCCCTCTGGCCGGC
* * * * * *
15565398 TGAGCGCTCGCAGGCTCGTTCCGTGGGTTGACTTTGGCATACGGTGTTCATTGCCAGTCTAAAGA
762 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AAGA
* *
15565463 TACGAAGTTCATTCCCAGTATAAGATTGGACCTCTAAGATTGGACCAGACTGAGGGTTACGGTAG
826 TACG-AGTTCATTCCCAGTCTAAGATTGGA-C-C-AA-A-T-GA-C-G-C-GAGGGTTACGGCAG
*
15565528 CACATGA
880 CACATGT
* *
15565535 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCG
1 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT--CCG
* * * *
15565600 GAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGTGTACACACATGAT
64 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGAT
* *
15565665 GTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
128 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15565730 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTACTGTCAGTAGCCATTAAAGTGTCTGA
193 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
15565795 AATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCCATTTTTTAGCTGAATGTTT
258 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
15565860 TTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAA
323 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAA
*
15565925 AAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACTGAGTCG
388 AAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAAC-GAGTCG
*
15565989 TCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
452 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
15566054 GGCATTGGCACGTAGAAACATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
517 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
15566119 TGCGCATCCCGTCTCTCTGGGCGGCGTAGTGCCTGCCCACCCACCCGCTCGTTTCGTCGATTGGC
582 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
15566184 TTAGGCATACGAAGTTCATTCCCAGTCTAAGAT----------C----G--GT-CTGCA-C--GC
647 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTACGGCAGCATGC
* * * * * * *
15566229 AAAGGGCGACTCGGTCGATCCCCGGC-TAGTGCATCCCGCCCC-CTTAGCCGGCTGATCGCCCGC
712 AAAGGGGGAC-CCGACGAT-CCCGACTTA-CGCATCCCGCCCCTC-TGGCCGGCTGAGCGCCCGC
* **
15566292 ACGCTCATTTCGTGCCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CG-G------
773 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGAGTTCATT
* *
15566349 ---A--C------TGGACC--A--A-G-GA---TTGCGACAGCACAT-T
838 CCCAGTCTAAGATTGGACCAAATGACGCGAGGGTTACGGCAGCACATGT
* *
15566377 CTGGGCTCGGGCGTGTGCTGGT-CTCGCATTTTTCTTCGTCGGGGCACCAT--T----G--T---
1 -TGGGCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCCG
* * *
15566430 ------C-G---GACGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGGTTTGCGCGCATGAT
64 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGAT
*
15566485 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
128 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
15566550 CACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCG
193 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G
*
15566614 AAATGGGTG-CACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTT
257 AAATGGG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
15566678 TTTTGTGCAAGCCAACAAAAACACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTT-TC
321 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-
* * * *
15566742 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGT
385 GAAAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGT
*
15566807 CTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
450 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * * *
15566872 AAGGCATTGGCATGCAGAAATATGAAGACGTGCTTAAACCCA-CTGACCACCCTATCAATCCACG
515 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACG
* *
15566936 GCTTGCGCGTCCCGTCTCTCTGGCCGACGTAGTGCCCG--CT--CGCCCGCTCGTTTCATCGGTT
579 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTT
*
15566997 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCTGG
644 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGT---A-C-GG
* * * *
15567062 ATCGGTAGCATGCAAAAGAGGACCCGGTCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGC
704 --C---AGCATGCAAAGGGGGACCC-GACGATCC-CGACTTACGCATCCCGCCCCTCTGGCCGGC
* *
15567127 TGAGCGCCCGCACAG-TCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGC
762 TGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
* * * ** * * * *
15567191 ATACAGAGTTAATTCCCAGTCTAACATCGGA--TTA-GAC-CGATGGTTACGGTAGCATATGC
825 ATAC-GAGTTCATTCCCAGTCTAAGATTGGACCAAATGACGCGAGGGTTACGGCAGCACATGT
* * *
15567250 TAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCA---TC---G--T-CGGA
1 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCCGGA
** * * ** * *
15567306 GAACCTGACCGGTGACATTAGGGTTTTGACAATCGGGGGGGCC-GGTGG-GTGCGCACATGATGT
66 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
15567369 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGATAACTCA
130 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15567434 CACCCCTTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATCAAAGTGTCTGAAA
195 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15567499 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
260 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
15567564 GTGCGTGCCAACAAAAATACAAGGATCACG
325 GTGCATGCCAACAAAAATACAAGGATCACG
15567594 CTCATTTCCT
Statistics
Matches: 4119, Mismatches: 403, Indels: 442
0.83 0.08 0.09
Matches are distributed among these distances:
816 52 0.01
818 1 0.00
819 10 0.00
820 478 0.12
821 5 0.00
823 1 0.00
824 1 0.00
826 1 0.00
830 1 0.00
832 2 0.00
835 1 0.00
837 2 0.00
838 1 0.00
840 1 0.00
841 1 0.00
842 1 0.00
843 55 0.01
844 1 0.00
845 3 0.00
846 95 0.02
847 6 0.00
848 1 0.00
849 2 0.00
850 1 0.00
852 1 0.00
856 1 0.00
859 1 0.00
860 1 0.00
861 2 0.00
862 4 0.00
867 4 0.00
868 1 0.00
869 2 0.00
870 1 0.00
871 4 0.00
872 214 0.05
873 2 0.00
874 2 0.00
875 2 0.00
876 467 0.11
877 129 0.03
878 4 0.00
879 4 0.00
880 5 0.00
881 7 0.00
882 684 0.17
883 98 0.02
884 88 0.02
885 37 0.01
886 10 0.00
887 67 0.02
888 2 0.00
889 1 0.00
890 4 0.00
891 2 0.00
892 2 0.00
893 4 0.00
894 120 0.03
895 8 0.00
896 3 0.00
897 35 0.01
898 98 0.02
899 12 0.00
901 51 0.01
902 425 0.10
903 128 0.03
904 64 0.02
905 414 0.10
906 62 0.02
907 1 0.00
908 92 0.02
909 25 0.01
910 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCCGGA
GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
ATTTTAAAAAATCTCGAACCTCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTACGGCAGCATGCAAAG
GGGGACCCGACGATCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGAGTTCATTCCCAGTCT
AAGATTGGACCAAATGACGCGAGGGTTACGGCAGCACATGT
Found at i:15567654 original size:26 final size:26
Alignment explanation
Indices: 15567618--15567668 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15567608 TCAGTTAGGC
15567618 ATACAGAGTTCATTCCAAGTCTAAGT
1 ATACAGAGTTCATTCCAAGTCTAAGT
* * *
15567644 ATACGGAGTTCATTCCCATTCTAAG
1 ATACAGAGTTCATTCCAAGTCTAAG
15567669 ATCGCATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCAAGTCTAAGT
Found at i:15568526 original size:423 final size:423
Alignment explanation
Indices: 15567734--15568583 Score: 1262
Period size: 423 Copynumber: 2.0 Consensus size: 423
15567724 GCCACATTTT
* * * * **
15567734 TCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACTGGCGACATTGGGGTTCTTA
1 TCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGA
* *
15567799 CGATCGGAGGGGCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATA
66 CGATCGGAGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
15567864 TTGGCCCCCTATCCCTCATCAAACCTCTAAAACTCACACCCCCTTAAAGAGCATTTGAAATTTTA
131 TTGGCCCCCTATCCCTCATCAAACCTCTAAAACTCACACCCCCTTAAAGAGCATTTGAAATTTTA
* * *
15567929 CAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
196 CAAGTTCGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAA
* * *
15567994 ATCTTGTAAACTTCGGGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAAAGAAATACAGCGATCAC
261 ATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAGAAATACAGCGATCAC
15568059 GTCTACCAAGTTTGGGGTGAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCAAAAAAAG
326 GTCTACCAAGTTTGGGGTGAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCAAAAAAAG
**
15568124 TTTTGAAAATCATGAAAAATAAAAAATAAGTCA
391 TTTCAAAAATCATGAAAAATAAAAAATAAGTCA
* * *
15568157 TCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGG
1 TCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGA
* * * *
15568222 CGATTGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCTCTTATA
66 CGATCGGAGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
15568287 TTGGCCTCCTATCCCTCATCAAACCTC-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
131 TTGGCCCCCTATCCCTCATCAAACCTCTAA-AACTCACACCCCCTTAAAGAGCATTTGAAATTTT
* *
15568351 AGAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAA
195 ACAAGTTCGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAA
* * *
15568416 AATCTTGTACACTTTGAGTTTTTAGCT-AATTTTTTTTGGGCATGCCAACAA-AATTACATG-GA
260 AATCTTGTAAACTTCGAGTTTTTAGCTGAA-TTTTTTTGGGCATGCCAA-AAGAAATACA-GCGA
* * **
15568478 TCACGTCTACCAAGTTTGGGGT-AAGAAATCC-TTCTGAAAAAATTTTAAAAAATCTCGAACCGT
322 TCACGTCTACCAAGTTTGGGGTGAA-AAATCCTTTC-GAAAAAATTTTAAAAAATCCCAAACCAA
* * * *
15568541 AAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
385 AAAAAGTTTCAAAAATCATGAAAAATAAAAAATAAGTCA
15568580 TCTT
1 TCTT
15568584 GCCATGAAAG
Statistics
Matches: 383, Mismatches: 38, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
422 9 0.02
423 371 0.97
424 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (423 bp):
TCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGA
CGATCGGAGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCTAAAACTCACACCCCCTTAAAGAGCATTTGAAATTTTA
CAAGTTCGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAGAAATACAGCGATCAC
GTCTACCAAGTTTGGGGTGAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCAAAAAAAG
TTTCAAAAATCATGAAAAATAAAAAATAAGTCA
Found at i:15569694 original size:26 final size:26
Alignment explanation
Indices: 15569657--15569715 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
15569647 GTTGAATTAG
*
15569657 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15569683 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15569709 -CAT-CGGA
1 GCATACGGA
15569716 CCAGACCGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15571964 original size:708 final size:717
Alignment explanation
Indices: 15570549--15572032 Score: 2195
Period size: 708 Copynumber: 2.1 Consensus size: 717
15570539 CCCAGTCTAA
* * * * * * * *
15570549 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCAAGGGTTGTGGCAACACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGG
* * * * *
15570614 CTCAGGTATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAAA
* *
15570679 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGGTGTGCGTACATGCTATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGTGCCGGGGGGGTGT-CGTACA-GCTA-G
* * *
15570744 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCAC
193 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCAC
* *
15570809 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTTTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15570874 GGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTAAGTTTTTAGCTAAATATTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTAAGTTTTTAGCTAAATATTTTTG
* * * * * **
15570939 TGCATGCCAACAAAAATACAAGGATCACATCTGCCAAGTTTGGCATCAAAACTCCTTCCCGCAAA
388 TACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCAGCAAAAATCCTTCCCAAAAA
*
15571004 AATTTTAAAAAATATCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACAAGTCATCT
453 AATTTTAAAAAATACCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACAAGTCATCT
*
15571069 TGCCATGAAACTTCACGTGAAGGCTTCAAGGACCATTGTATGAATTTACATGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTCAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15571134 ATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15571199 ACATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCAGCCCTCTCGTTTCGTCAGTTGG
648 ACATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCAGCCCTCTCGTTTCGTCAGTTGG
15571264 CTTAG
713 CTTAG
*
15571269 GCATACGAAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGG
* * * *
15571333 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAAA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAAA
* * *
15571398 ACCTGACCGATGGTATTGGGGTTCCGACGAT-AGGGG-GCC-GGGGGGTGT-GTGCA-C-A-CGA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGTGCCGGGGGGGTGTCGTACAGCTAGCGA
* * *
15571456 TGGGTGCTAGTATTTGGCCCTTATGTTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTAGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACC
15571521 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
15571586 GACACTTTTTTCAAATGGTCAGAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTAC
326 GACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTAAGTTTTTAGCTAAATATTTTTGTAC
* *
15571651 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-AGCAAAAAATGCTT-CCAAAAAAA
391 ATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCAGC-AAAAATCCTTCCCAAAAAAA
* * * * *
15571714 TTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATACCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACAAGTCATCTTG
15571779 CCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 CCATGAAACTTCACGTGAAGGCTTCAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15571843 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCC
584 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * * *
15571908 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCGGTCC-GCCCG-CCTGCTTGTTTCGTCGGTTG
649 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG-CCTGCCAGCCCT-CTCGTTTCGTCAGTTG
*
15571971 GCTTGG
712 GCTTAG
* * *
15571977 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGACAGCA
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
15572033 AGATCGAAAG
Statistics
Matches: 690, Mismatches: 68, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
707 6 0.01
708 274 0.40
709 249 0.36
711 1 0.00
712 1 0.00
714 4 0.01
716 9 0.01
717 3 0.00
718 4 0.01
719 109 0.16
720 30 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAAA
ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGTGCCGGGGGGGTGTCGTACAGCTAGCGA
TGGGTGCTAGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTAAGTTTTTAGCTAAATATTTTTGTAC
ATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCAGCAAAAATCCTTCCCAAAAAAAT
TTTAAAAAATACCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACAAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTCAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
TCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCAGCCCTCTCGTTTCGTCAGTTGGCTT
AG
Found at i:15573797 original size:715 final size:697
Alignment explanation
Indices: 15572170--15574343 Score: 2999
Period size: 716 Copynumber: 3.1 Consensus size: 697
15572160 AAGCATACAA
* * *
15572170 AGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTACGGCAGCACATGCTGCGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGCAGCACATGCTG-GCTCCGGCA
* * * * *
15572234 TGTACTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCGGCATTAT
65 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATTGTCGGAGAACCTGACCGGCGGCATTAG
15572299 GGTTCCGACAATCGCGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
129 GGTTCCGACAATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
15572364 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
192 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-AGCATTT
15572429 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
256 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
15572494 AGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTT-TGCATGCCGAA-AAAAAT
321 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCC-AACAAAAAT
* * *
15572556 AAAAGGATCATGTCTACTAAGTTTGGGGCCAAAACACCTTTCGAAAAAATTTTAAAAACTCCCGA
385 AAAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA-TCCCGA
15572621 ACCTC-T-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
448 A--TCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
15572684 GTGGAGGCC-TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
511 GT-GAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
* * * * *
15572748 TATGAAGATGTGCCTAAACCCACCAACCACCCTAACGATCCACAGCTTGCCCATCCCGTCTCTCT
575 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCA
* * * * * *
15572813 GGCTGGCATAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGATTGGCTTGGGTATACGG
640 GGCCGGCGTAGTTCCCGCCCGCCCG--C-CC-GCTCGTTTCATCG-TTGGCTTAGGCATACGG
* * *
15572876 AGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGCACAAGCTGGGCT-CGAGC
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGCAGCACATGCT-GGCTCCG-GC
*
15572940 ATGTGCTGGTGCCGCA-TTTTCTTTGTCGGAGCACCATCGTCGGGGCATCACCGGAGAACCTGAC
64 ATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GCACCAT--T----G--T---CGGAGAACCTGAC
* * * * * *
15573004 CGACGGCATTGGGGTTCCGACGATCGGGGGTCGGGGGGGTGTGTGCACATGATGTGCGATGGGTG
117 CGGCGGCATTAGGGTTCCGACAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
15573069 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCGCCTT
182 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CCTT
* *
15573133 AAAATGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAGTGGGGACAC
246 AAAA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
15573198 TTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGC
310 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGC
* * * *
15573263 CAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGCCAAAAGTCCTTCCGAAAAAATTTTAAA
375 CAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
15573328 TAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
440 -AATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
**
15573393 ACTTTTCGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
504 ACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* ** * *
15573458 TAGAAGTATGAAGATGTGATTAAACCCACCTACCACCCTATCGATCCACGGCTTGTACATACCGT
569 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
* *
15573523 CTCTCAGGCCGGCGTAGTTCACGCCCGTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGG
634 CTCTCAGGCCGGCGTAGTTCCCGCCCGCCCGCCCGCTCGTTTCATC-GTTGGCTTAGGCATACGG
* * *
15573588 AGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCCGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGCAGCACATGCT-GGCTCCGGCA
* * * *
15573653 TGTGCTGGTGCCGTATTTTTCATCGTCAGGGCACCATTGTCGGAGAACCTGACTGGCGGTATTAG
65 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATTGTCGGAGAACCTGACCGGCGGCATTAG
*
15573718 GGTTCCGACAATCAGGGGGGCCGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGG
129 GGTTCCGACAATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
15573783 CCCTTATATTGG-CCCCTATTCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCGTTTG
193 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAAGCATTTG
* * *
15573847 AGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCACATG
257 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
15573912 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATAT
322 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATAA
* * * * * *
15573976 AAGGATCATGTCGACCAAGTTTGGGGCAAAACTCCTTCTGAAAACATTTTAAAAAATCCCAAACC
387 AAGGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCGAATC
* *
15574041 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCATCTTGCCATGAAACTTCACGTGAA
451 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
15574106 GGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCAC-GAGAAATATGAA
516 GCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
* * * * * *
15574170 GATGTGCCTAAACCCACCTACCACCCTATCTATCCATGGATTGCGCTTCCCGTCTCTCTA-GTCG
581 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTC-AGGCCG
* *
15574234 ACGTAATGCCCGTCGGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
645 GCGT-A-G---TTC--CC-GCCCGCCCGCCCGCTCGTTTCATC-GTTGGCTTAGGCATACGG
*
15574296 AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGCAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGCAGCA
15574344 AGATCGACAA
Statistics
Matches: 1307, Mismatches: 120, Indels: 80
0.87 0.08 0.05
Matches are distributed among these distances:
700 65 0.05
701 189 0.14
702 171 0.13
703 66 0.05
705 5 0.00
706 43 0.03
707 44 0.03
708 86 0.07
711 1 0.00
712 98 0.07
713 21 0.02
714 9 0.01
715 202 0.15
716 236 0.18
717 71 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (697 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGCAGCACATGCTGGCTCCGGCAT
GTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATTGTCGGAGAACCTGACCGGCGGCATTAGGG
TTCCGACAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATAAAAGG
ATCATGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATCCCGAATCGTAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCAGGCCGGCGTAG
TTCCCGCCCGCCCGCCCGCTCGTTTCATCGTTGGCTTAGGCATACGG
Found at i:15577370 original size:26 final size:26
Alignment explanation
Indices: 15577334--15577386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15577324 GTTGATTTAG
15577334 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
* * *
15577360 GCATACGGAGTTCATTCCTATTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
15577386 G
1 G
15577387 ATCGAAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:15578237 original size:26 final size:26
Alignment explanation
Indices: 15578201--15578253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15578191 GTTGACTTAG
*
15578201 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15578227 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15578253 G
1 G
15578254 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15579542 original size:907 final size:903
Alignment explanation
Indices: 15577459--15587393 Score: 12424
Period size: 907 Copynumber: 11.1 Consensus size: 903
15577449 TTTTCTTCGT
* * * *
15577459 CGGAGAACCTGACCGGCGG-ATTGGGGTTCCGGCGATCTGGGTGGCCGGAGCGGGTGTGCGCACA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCGG-GGGGGTGTGCGCACA
*
15577523 T-ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
15577587 AACTCACA-CACCTTAAAGAGCATATGAGATTTTACAGATTTGCTG-CAGTAGCCATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
15577650 CTGAAATGGGGACACTTTTTTCAAACGATCACAAAATCTTGTACGCTTCGAG-TTTTAGCTGAAT
194 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
15577714 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
15577779 AGAAAAAATTTTAAAAAATCTCGAACCACAGAAAGGTTT-GAAAATCGTGAAAAATAGAAAACGA
324 CGAAAAAATTTTAAAAAATCTCGAACCACA-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
15577843 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
388 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
15577908 AAATAGCATTGGCATGCAGAAATATAAAGATGTGCCCAAACCCACCTACCACCCTATCGATACAC
453 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
15577973 GGCTCGCGCATCCCGTCTCTCTGGCCGGCAT-A-G-T-----GCCCACCCGCCAGCTCATTTCGC
518 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * *
15578030 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGGTTGTGGCA
583 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCA
* * * * * * * *
15578095 GTAGGATCGACAGCACACAGAAGGGGACCCGACCGACCCCCGACCTGCCCATCCCGCCCTTCTGG
648 GTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*** * *
15578160 CCAACTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
713 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
15578225 AAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGATTGAGGGTTACGGCAGCACATGCTG
778 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTG
* * *
15578290 GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAACGCCGGAGCATCGC
843 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * *
15578351 TGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGAGTGGGTGTGCGCACA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGGCGG-GGGGGTGTGCGCACA
* *
15578416 TGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
15578481 AACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
15578546 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
194 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
15578611 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTTGGGCCAGAAA-TCCTT
259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTT
* *
15578675 TCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
323 CCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
15578740 GTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAA
388 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * * *
15578805 AAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCAACCACCTTATCGATCCAT
453 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
15578870 GGCTTGCGCATCCCGTCTCTCTCGTTGGCGTAATGCTCGCCCTCCCGTCCGCCCGTTCGTTTCGT
518 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * *
15578935 CGTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGCTACAGCA
583 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCA
* * * * * ** *
15579000 GTAGGCTCGGTAGCACGTAGAGTGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGTCCCTCTGG
648 GTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * * * *
15579065 CTGGCTGAGTGCCCGCACACTTGTTTTGTGGGTTAACTTTGGCTTACGGAGTTCATTCCCAGTTT
713 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** *
15579130 AAACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTTCAACAGCAAATGCTG
778 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
15579195 GGCTCGGGCATGTGTTGGGGCCGCTTTTTTCATCGTCAGGGCACCATCGCCGGAGCATCAC
843 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * *
15579256 CGGAGAACCTAATCGGCAGCATTGGGGTTCCGACGATCAGGGGGGTCGACGGGGGGGTTTGCGCC
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG--G-CGGGGGGGTGTGCGCA
*
15579321 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCG
62 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
15579386 AGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGT
127 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
15579451 GTCTGAAATGGGGACACTTTTTCCAAACGATAACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
192 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
15579516 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCT
257 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
*
15579581 TCCGAAAAAATTTTCAAAAATCTCGAA-CAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
322 TCCGAAAAAATTTTAAAAAATCTCGAACCA-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * * *
15579645 GAGTCGTCTTTCCATTAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
386 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
15579710 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCC
451 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * * *
15579775 ACGGCTTGCGTATCCCATCTTTCTGGCCGGCGTAGTGCCCGCCCGACCGCTCGCCCGCTCGTTTC
516 ACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTC
* * * * **
15579840 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-TGAACCAGA-CTGACCGTTGC
581 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATC-GAGGGTTGC
* * * * * *
15579903 GGCAGCAGGATCGACAGCACGCAGAGGGGGACTCGGCCGATCTCCGACTTGCGCATCCCGCCCCT
644 GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
15579968 CTGGCCGGCTGAGCGCCTGCACGCTCGTTTTGTGGGTTGAGTTAGGCATACGGAGTTCAGTCCCA
709 CTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
15580033 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACAT
774 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACAT
*
15580098 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-C----CA----
839 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * *
15580154 --GAGAACTTGACCGGCGGCATTGGGGTTTCGGCGATC-----GG-GGGGGGGTGTGCACACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
* * * * *
15580211 ATGTGCGATGGGTGCTAGTGCTTGGCCCTTATATTGGCACCCTATCCCTCATCAAATCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
15580276 CTCACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
15580341 GAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
15580406 TTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTGCTG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * ** *
15580471 AAAAAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
15580536 GTCCTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
15580601 TGGCATTGGCGTGTAGAAATATGAAGATGTACCTAAACCCACCTACCATCTTATCGATACACGGC
456 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * *
15580666 TTGCTTATCCCGTCTCTCTGGTCGACGT-A-G-T-----GCCTGCCCGCCCTCTCGTTTCGTCAG
521 TTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
15580723 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCA
586 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTA
* * **
15580788 GGATCAGCAGCACGTAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGCCCCTCTGG-TC
651 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-
* * * * *
15580852 GGCTGAGCACCCGTACGTTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
715 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
15580917 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGTGGCAGCACATGCTGGG
780 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15580982 CTTGGGCATGTGCTGGTGCCGCATATTTCTTCGTCGAGGCGCCATCACCGGAGCATC-A
845 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * * *
15581040 CGAGAGAACCTGACCGACAGCATTAGGGTTCCGGCGATCGGGGGCGCCAGGGCGGGTGTGCGCAC
1 CG-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GGC-GGGGGGGTGTGCGCAC
* *
15581105 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGTCCCCTATCCCTCATCAAACCTCGA
63 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
15581170 GAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTATGCTAG-CAGTAGCCATTAAAGT
128 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGT
* *
15581234 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTAGCTAA
192 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
15581299 ATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCA
257 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
15581363 TCCGAAAAAATTTAAAAAAATCTTGAACCCCAAAAAGTTTCAAAAATCGTGAAATATACAAAACG
322 TCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
15581428 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
387 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
15581493 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCA
452 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
15581558 CGGCTTGCGCATCTCGTCTCTCTGGCCGGCGT-A-G-T-GCCCGCCCG-TCG---ACTCGTTCCA
517 CGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCG
* *** *
15581615 TCGGTTGGCGTAGGCATACGGAGTTCATTTAAAGTCTAAGATCAGACCAGA-CTGAGGGTTGCGG
582 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGG
* *
15581679 TAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCT
646 CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** *
15581743 GG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAG
711 GGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* **
15581807 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCACA-CTGAGGGTTGCGGCAGCACAT
775 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCACAT
* * * *
15581871 GCTGGGCTCGGGTATGTGCTAGTGCCACATTATTCTTCGTCGGGGCACCAT---C---G--T---
839 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
*
15581925 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGTGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACAT
* *
15581990 GATGTGTGATGGGTACTGGTACTTGGCCC------T-------TATCCCTCATCAAACCTCGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
15582042 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
15582106 TGAAATGTGGATAATTTTTTCAAATGGTCCCAAAATCTTGCACACTTCGAGTTTTTAGCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
15582171 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
15582236 AAAAAAATGTTT-AAAAATCCCGAACCCCAAAAAGTTTAAAAAATCGTGAAATATACAAAACGAG
325 GAAAAAAT-TTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
15582300 TCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTTTCAATTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
15582365 AATGGCATTGGGATGCAAAAATATGAAGATGTACCTAAACCCACCTACCGCCCTATCGATCCACA
454 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * ** * **
15582430 GCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-G-T-GATCGCCTGCTTGCCCGCTCGTTTCGTC
519 GCTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* ** * **
15582491 GGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTATGGCAG
584 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
* * * *
15582556 TAGGATTGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGC
649 TAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * * *
15582621 CGGCTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCGTATGGAGTTCATTCCCAGTCTA
714 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
15582686 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTACATGCTGG
779 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
15582751 GCTCGGGTATGGGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCGC
844 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * ** *
15582811 CGGAGAACCTGACCGGTGGCATTGCGCTTCCTACGATCGGGGGGGCCGAAGGGGTGTGCACACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACAT
* * * *
15582876 GATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGG-CCCCTGTCCCTCGTCAAACCTCAAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
15582940 ACTCACACCCCCTTAAAGAACGTTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
** *
15583005 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAAGAGTTTTTAGCCGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** *
15583070 TTTTTGTGCATGCCAACAAAAGCACAAGGATCATGTCTACCAA------GGCCAAAACTCCTTCC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * **
15583129 AAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
325 GAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
15583194 CGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
15583259 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
455 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
15583324 CTTGCGCATCCCGTCTCTCTGG-CGGGCACTACTCTCTGGCTGGCGTAGTGCCCACCCGCTCGTC
520 CTTGCGCATCCCGTCTCTCTGGTC-GGC-GTA----AT-GCT--C-----GCCCGCCCGC-C--C
* *
15583388 TGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGG
568 -GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** * * * ** * * * * *
15583453 GCCAACGGTTGCAGCAACAGGATCGGTAGTACCCAGAGGGGGACCCGACCGATCCCCGCCTTTCG
632 ATCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * * *
15583518 CATCCCTCCCCTCTGG-TCGACAGAGCACCCGCATGCTCATTTCGTGGGTTGACTTTGGCATACG
697 CATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * ** *
15583582 GAGTTCATTCCCAGTCTAAACATATGGAGTTAATTCCCAATCTAAGATCAGG-CCAAACCGAGGG
761 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGATCGAGGG
* * * * * * *
15583646 TTACGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTATCCTCGTTGGGGCACCAT
825 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
** *
15583711 CGTTGGAGCATCGT
890 CGCCGGAGCATCGC
* * * *
15583725 CGGAGAACCTGACCTGCGACATTGGGGTTCCGAAGATCGGGGGGGCCGGGGGGTGTGCGCACAT-
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
15583789 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
15583854 CTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
15583919 GAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTGCACTTCAAGTTTTTAGCTGAATTG
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
15583984 TTTTGTGCATGCCAAC-AAAATAAAAGGATCATGTCTATCAAGTTTGGGGCCAAAACTCCATCCG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** *
15584048 AAAAAATTTTAAAAAATCTTGAACC-GTAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
15584112 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATAAATTTCCTAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
15584177 TGGCATTGGCACGCAGAAATATAAAGATTTGCCTAAACCCACCTACCAACCTATTGATCCAAGGC
456 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
15584242 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
521 TTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
15584307 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGGCAGCA
586 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTA
* * ** *
15584372 GGATCGGCGGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCG
651 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTG
* * * *
15584437 GCTGAGCGCCTGCACGCTTGTCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
716 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
15584502 CATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAGCACATGCTAGGC
781 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGC
* * * ** * *
15584567 TCGAGCATGTGCTAGTGCCGCATTTATCTTCGTCGGGGCACCATCGTTGGAGTATTGC
846 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * * * * *
15584625 CGGGGAACCTGATCGACGACATTGGGGTTCCGATGATCAGGGGGCCGAGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
* * *
15584690 ATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGCA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
15584755 CTTACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTGT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
15584820 GAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
15584885 TTTTGTGCATG-CAAAAAAAAAACAAGGATAACATCTACCAAGTTTGGGGCCAAAACTGCTTCCA
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** * * *
15584949 AAAAAATTTTAAAAAATAC-CGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGT
326 AAAAAATTTTAAAAAAT-CTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
15585013 CGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*** * *
15585078 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGG
455 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * ** *
15585143 CTTGCGCATCCC-T-TCTCT--TTGGC-CAACG-TAG--TGCCCGCCCGCCTACTCGTTTTGTCG
520 CTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
15585200 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAAAGGGTTGCAGTAG
585 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAG
* * * * * * * * * * *
15585264 CAGTATCGACAACATGCAGAGGGGAACCCAACTGATCCCCGACTTACGCATCCCACCCCTCTGGC
649 TAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
15585329 CGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCCA
714 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
15585394 AGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAACACATGTTGG
779 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGG
* * * *
15585459 GCTCGGGCATGTGTTGGTGCCACATTTTTCTTCG-CGGGGGCACCATCACCGGAGGATCGC
844 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGC
* * *
15585519 CGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGAGGGGTCGGGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGGCGGGGGGGTGTGCGCACAT
* * * * *
15585584 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGTCCCCTATCCTTCATCAAATCTTGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
15585649 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
15585714 TAAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
15585779 GTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAC-CTCTTC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTC
* * * *
15585843 CGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGATAATCGTGAAAAATAGAAAATGAG
324 CGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
15585908 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * * * * * *
15585973 AATGGTGTTGACACGTAGAAATATGAAGAAGTG-GTAAACCCACCTACCACCTTATCGATCCACG
454 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * ** * * * * *
15586037 GCTTGAGCATCCCATCTCTCTGGTCGACGTAGTGC-CTGTCCGGTCACCCGACCTCTCATTT-AT
519 GCTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTC-GCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * *
15586100 CAGTTGGCTTAGGCATACGGAGTTCATACCTAGTCTAAGATCAGACCGGAT-GAAGGGTTGCAGT
583 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG-AGGGTTGCGGC
* * * * * * *
15586164 TGTAGGACCGACAGCATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTT
647 AGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
15586229 GCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATT
712 GCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
15586294 TAAGCATACAGAGTTCATTCTCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATACT
777 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCT
* * *
15586359 GGGCTCGAGCATGTGTTGGTGCGGCATTTTTCTTCGTCGGGGCACCAT---C---G--T---
842 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * * ** * * *
15586410 CAGAGAACCTGACCGACGACATTGGAGTTCTGGTGGTCGGGGGGGCCGGGGGGTGTGCGCATATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
* *
15586475 ATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
15586540 CTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * **
15586605 GAATTGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTATTTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
15586670 TTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTA-AAATGTTTGGGGCCAAAACTACTTCC
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCC
* * * ** * **
15586734 AAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTTGAAAATCGTGAAGAATAGAAAATTAGT
325 GAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
15586799 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * * * *
15586864 ATGGCATTAGCACGCATAAATATGAAGATGAGCCTAAA-CC-CCT-CTACCCTATCGATCTACAG
455 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
15586926 CTTACGTATCCCATCTCTCTGGTCGGCGTAGA-GCCCGTCCGCCCGCCCGTCTGCTCGTTTCGTC
520 CTTGCGCATCCCGTCTCTCTGGTCGGCGTA-ATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* ** *
15586990 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTCACGGTAG
584 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
* * * * ** * ** *
15587055 TAGGATTGGCAGCACGTAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATGTCACCTTTCTTGC
649 TAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
15587120 TGGCTAAACGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAATCTA
714 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * *
15587185 AGCATATAGAGTTCGTTCCCAGTGTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGT
779 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGG
* * * *
15587250 GCTCGGGCATGTGCTGGTGCGGCTTTTTTCTTCGCCAGGGCACCAT---C---G--T---
844 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * ** * * *
15587299 CGGAGAACCTGACCGGCAGCATTGGAGTTTTTG-TGGTCGGGGGGGCCGGGGGGGTGTGCGCATA
1 CGGAGAACCTGACCGGCGGCATTGG-GGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACA
**
15587363 TGATGTGCGATGGGTGCTCATACTTGGCCCT
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCT
15587394 CTACCAGTAG
Statistics
Matches: 7872, Mismatches: 1015, Indels: 314
0.86 0.11 0.03
Matches are distributed among these distances:
868 1 0.00
869 127 0.02
870 288 0.04
871 4 0.00
874 112 0.01
875 165 0.02
876 1 0.00
877 1 0.00
878 286 0.04
879 3 0.00
881 1 0.00
883 47 0.01
884 39 0.00
885 2 0.00
886 537 0.07
887 2 0.00
888 61 0.01
889 345 0.04
890 454 0.06
891 36 0.00
892 24 0.00
893 257 0.03
894 396 0.05
895 444 0.06
896 655 0.08
897 485 0.06
898 34 0.00
899 157 0.02
900 353 0.04
901 255 0.03
902 431 0.05
903 15 0.00
904 9 0.00
905 317 0.04
906 9 0.00
907 738 0.09
908 3 0.00
909 1 0.00
910 6 0.00
911 2 0.00
912 58 0.01
913 172 0.02
914 317 0.04
915 1 0.00
916 2 0.00
917 178 0.02
918 41 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTA
GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
Found at i:15580049 original size:26 final size:26
Alignment explanation
Indices: 15580013--15580065 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15580003 GTTGAGTTAG
15580013 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
*
15580039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
15580065 G
1 G
15580066 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:15580920 original size:26 final size:26
Alignment explanation
Indices: 15580891--15580943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15580881 GTTGACTTAG
15580891 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15580917 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15580943 G
1 G
15580944 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15583612 original size:26 final size:26
Alignment explanation
Indices: 15583576--15583626 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15583566 TTGACTTTGG
* *
15583576 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTAATTCCCAATCTAAA
*
15583602 CATATGGAGTTAATTCCCAATCTAA
1 CATACGGAGTTAATTCCCAATCTAA
15583627 GATCAGGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTAATTCCCAATCTAAA
Found at i:15584512 original size:26 final size:26
Alignment explanation
Indices: 15584475--15584527 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15584465 GTTGACTTAG
15584475 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15584501 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15584527 G
1 G
15584528 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15586323 original size:26 final size:26
Alignment explanation
Indices: 15586271--15586323 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15586261 GTTGACTTAG
* *
15586271 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
15586297 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15586323 G
1 G
15586324 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Done.