Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 86 of 131
Found at i:15589192 original size:895 final size:885
Alignment explanation
Indices: 15587397--15590066 Score: 3512
Period size: 895 Copynumber: 3.0 Consensus size: 885
15587387 TGGCCCTCTA
*
15587397 CCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
1 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
15587462 TCAAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGGCTACCAAGT
66 TTAGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * *
15587527 TTGGGGCCAAAGAAT-CATCCGAAAAAATTTTAAAAAGTCCCAAACTGCAAAAAGTTTCAAAAAT
131 TTGGGGCCAAA-ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * * *
15587591 CATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCT
195 CATAAAAAATAGAAAACGAGTCCTCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
15587656 ATGAATTTACAAGCCATAAAAATGGCATTGACACATAAAAATATGAAGATGTGCCTAAACCCACC
260 ATGAATTTACAAGTCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACC
* * *
15587721 TACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
325 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGGCCGCTCGCCC
* * * *
15587786 GCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCTATTCTAAGATCGGACCAGACTGA
390 CCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGA
* *
15587851 GGGTTGTGGCAGCAAGATCGGCAGCATGCAGAGGGGGACACGTCCGATCCCCGGCTTGCGCATCC
455 GGGTTGCGGCAGCAAGATCGGCAGCATGCAGAGGGGGACACGACCGATCCCCGGCTTGCGCATCC
*
15587916 CG-CCCTTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
520 CGCCCCTT-TGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
* * *
15587980 AATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACT-GCACCGAGGGTTACG
583 AATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG-ACCGAGGGTTGCG
* ** * *
15588044 GTAGCACATACTGGGCTCAGGCATGTGCTGGTG-TCGCGTTTTTCTTCGCCGGGGCACCATTGCC
647 GTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCT-GTATTTTTCTTCACCGGGGCACCACTG-C
* * * * *
15588108 GGAGCATCGCCAAAGAACCTGGCCGACGACATTGGGGTTCCGACGATCGAGGGGG-CTGGGGGGT
710 -GA-C-TCG---GAGAACCTGACC-AGGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGGT
* *
15588172 GTGCGCACATGATGTGCGATGAGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCA
767 GTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCA
*
15588237 AACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTG
831 AACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTG
15588292 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
1 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
15588357 TTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGT
66 TTAGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* *
15588422 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATC
131 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
*
15588487 ATAAAAAATAGAAAACGAGTCCTCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCACTGTA
196 ATAAAAAATAGAAAACGAGTCCTCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
15588552 TGAATTTACAAGTCATAAAAATGGCATTGGCA-AGTAGAAATATGAAGATGTGCCTAAACCCACC
261 TGAATTTACAAGTCATAAAAATGGCATTGGCACA-TAAAAATATGAAGATGTGCCTAAACCCACC
* **
15588616 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGGCCGCTCGCCT
325 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGGCCGCTCGCC-
* * *
15588681 ATCCCTCGTTTCGTCGGTTAGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGACCAGAC
389 --CCCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * *
15588746 TGAGGGTTGCGGTAGCACGATCGGCAGCACGCATAGGGGGACTCGACCGATCCCCGGCTTGCGCA
452 TGAGGGTTGCGGCAGCAAGATCGGCAGCATGCAGAGGGGGACACGACCGATCCCCGGCTTGCGCA
* * * *
15588811 TCTCGCCCCTTTGGTCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAG
517 TCCCGCCCCTTTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
* ** * * *
15588876 TTAATTGCCAGTCTAAGCATACAAAGCTCAATCCTAGTCTAAGATCAGACTAGACCGAGGGTTGC
581 TTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGC
*
15588941 GGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGTATTTTTCTTCACCGGGGCACCA-T-C-
646 GGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGTATTTTTCTTCACCGGGGCACCACTGCG
*
15589003 AC-CGGAGAACCTGACCAAGGGCATTGGGGTTCCGGCGATCAGGGCGGCCGGGGGGGTGTGCACA
711 ACTCGGAGAACCTGACC-AGGGCATTGGGGTTCCGACGATCAGGG-GGCCGGGGGGGTGTGC-CA
*
15589067 CATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTG
773 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTG
* *
15589132 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
838 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTG
*
15589180 CCAGTAGCCAGTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGGGACACTTTTTTCAAATG
1 CCAGTAGCCATTAAAGTGTC-----T---G-----------AAATGGGGACACTTTTTTCAAATG
* * * * *
15589245 GTCACAAAATCTTATACACTTCGATTTTTTAGCTGCATATTTTTGTGCAAGCCAAAAAAAATACA
47 GTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACA
* *
15589310 AGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAATATCCCGAACC
112 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC
15589375 GTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCCTCTTGCCATGATACTTCACGTGAA
177 GTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCCTCTTGCCATGATACTTCACGTGAA
* *
15589440 GGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACACACAAATATGAA
242 GGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACATAAAAATATGAA
* * *
15589505 GATTTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGA
307 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
*
15589570 CGTAGT-GCCTGCCCATCCGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
372 CGTAGTGGCC-G--C-T-CG--C-CCC-CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
* ** * * * * * *
15589634 TCCCAGTCTAAGAGCAAACCAGACCGAGGGTTGCAGCAGCAGGATTGGCAGCATGTAGAGAGGGA
428 TCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAGCATGCAGAGGGGGA
* * * ** * * * ** *
15589699 CCCGGCCGATCCTCGAATTGGGCATCCCGCCCCTCTGGCCTGCTGAGCGCCCACACTTTCGTTTT
493 CACGACCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCC-GCTGAGCGCCCGCACGCTCGTTTC
* * **
15589764 GTGGGTTGACTTAGGAATACGGAGTCCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
557 GTGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
15589829 AAATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATATGCTGGTGCCGTATT
622 AGATCAGACTAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGTATT
** * *
15589894 TTTCTTCGTTC-GGGCACCATCACCGTAGCAACGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
687 TTTCTTC-ACCGGGGCA-C--CA-C-T-GCGAC-TCGGAGAACCTGACCAG-GGCATTGGGGTTC
* *
15589958 CGACGATCGGGGGGGCTGGGGGGTGTGTG-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
743 CGACGATC-AGGGGGCCGGGGGG-GTGTGCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
** * *
15590022 TATATTGGTGCCCTATCCCTCATCAAACCGTGAGAACTCACACCC
806 TATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCC
15590067 ATTTAAAATA
Statistics
Matches: 1562, Mismatches: 157, Indels: 85
0.87 0.09 0.05
Matches are distributed among these distances:
886 4 0.00
887 32 0.02
888 140 0.09
890 2 0.00
892 1 0.00
893 2 0.00
894 3 0.00
895 352 0.23
896 1 0.00
897 2 0.00
898 273 0.17
899 7 0.00
906 3 0.00
907 334 0.21
908 1 0.00
909 1 0.00
910 1 0.00
911 4 0.00
912 261 0.17
913 4 0.00
914 1 0.00
915 2 0.00
918 1 0.00
920 1 0.00
921 2 0.00
922 76 0.05
923 43 0.03
924 8 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTAGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
ATAAAAAATAGAAAACGAGTCCTCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGTCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGGCCGCTCGCCCC
CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAG
GGTTGCGGCAGCAAGATCGGCAGCATGCAGAGGGGGACACGACCGATCCCCGGCTTGCGCATCCC
GCCCCTTTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGTAG
CACATGCTGGGCTCAGGCATGTGCTGGTGCTGTATTTTTCTTCACCGGGGCACCACTGCGACTCG
GAGAACCTGACCAGGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCA
CACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTG
Found at i:15589226 original size:19 final size:19
Alignment explanation
Indices: 15589202--15589245 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
15589192 AAAGTGTCTA
15589202 AAATGGGGACACTTTTTTC
1 AAATGGGGACACTTTTTTC
15589221 AAATGGGGACACTTTTTTC
1 AAATGGGGACACTTTTTTC
15589240 AAATGG
1 AAATGG
15589246 TCACAAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (19 bp):
AAATGGGGACACTTTTTTC
Found at i:15589819 original size:26 final size:26
Alignment explanation
Indices: 15589780--15589829 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15589770 TGACTTAGGA
15589780 ATACGGAGTCCATTCCCAGTCTAAGC
1 ATACGGAGTCCATTCCCAGTCTAAGC
*
15589806 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTCCATTCCCAGTCTAA
15589830 AATCAGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
ATACGGAGTCCATTCCCAGTCTAAGC
Found at i:15591446 original size:26 final size:26
Alignment explanation
Indices: 15591410--15591462 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15591400 GTTGACTTAG
15591410 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15591436 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15591462 G
1 G
15591463 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15593137 original size:886 final size:884
Alignment explanation
Indices: 15590543--15593962 Score: 3693
Period size: 900 Copynumber: 3.8 Consensus size: 884
15590533 TAGGCCTACA
* * * **
15590543 GAGTTCATTCCCAGTCTAAGATTGGATCAGACCTAGGGTTACGGCAGCACATGCT-GCCTCGGGC
1 GAGTTCATTCCCAGTCTAAGA-TGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAAGC
*** * * * * ** *
15590607 ATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGTCGGAGAACCTGAC
65 ATGTGCCCGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTC-GAG-AACG-C-AAG-ACCTGA-
** * * *
15590672 CGATGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGTGGGGGTGTGCGCACATGATGTGCGATGG
124 CGGCGACATTGGGGTTCC-GCGATTGGGGGGGCCGG-GGAGGTGTGCGCACATGATGTGCGATGG
* * *
15590737 CTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACTCCCCC
187 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCC
15590802 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
251 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * **
15590867 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTAGTGCAAA
316 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** *
15590932 CCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGATCAAAACTCCTTCCAAAAATATTTTA
381 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
** ** * *
15590997 AAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGGCGTCTTGCCATG
446 AAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
15591062 AAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCA
511 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCA
* * *
15591127 CACAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
575 CATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TGCGCATCCC
* * *
15591192 GTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTCAGGCATA-
639 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCT-AGGCATAC
*
15591256 GGAAGTTCATTCCCAGTCTAACATAAGACCAGACTGAGGGTTACGACAGCAGGATCGACAACACA
703 GG-AGTTCATTCCCAGTCTAAGATAAGACCAGACTGAGGGTTACG-CAGCAGGATCGACAACACA
* * * ** * *
15591321 CAGAGGGGGTCCCGGCCAATCCCCGGCTTACGCATCTTGCTCCTT-TGGCTG-GTAGAGC-GCCC
766 CAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCCCGC-CCTTCTGGCCGACT-GAGCTG--C
* *
15591383 GCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACG
827 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-AAGCATA-G
* * * *
15591443 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCACATACTGGGCTCAAGC
1 GAGTTCATTCCCAGTCTAAGAT-GGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAAGC
* **
15591508 ATGTGCCGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCG-GACCATCGTCGAAGACCCTGA
65 ATGTGCCCGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGAGA--A-CG-C-AAGA-CCTGA
15591572 CCGGCGACATTGGGGTTCCGACGATTGGGGGGGCC-GGGAGGGTGTGCGCACATGATGTGCGATG
124 -CGGCGACATTGGGGTTCCG-CGATTGGGGGGGCCGGGGA-GGTGTGCGCACATGATGTGCGATG
* * *
15591636 GGTGGTGGTACTTGGACCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACCCC
186 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
15591701 TTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGA
251 -TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
15591766 CACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAT
315 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
15591831 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATGTA
380 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
*
15591896 AAAAAATCCTAAACCGCAAAAAGTTTCT-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
445 AAAAAATCCCAAACCGCAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
15591960 TGAAACTTCACGCGAAGGCTTAAGGGAACATTGTATGAATTTAAAAGCCATAAAAATGGCATTGA
509 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGG
* * **
15592025 CACAGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATC
573 CACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TGCGCATC
* * * *
15592090 CCGTCTCTCTGGCCGACATAGTGCCTGACCGCCCGCCCGCCCGCTCATTTTGTCGATTGGCTTAG
637 CCGTCTCTCTGGCCGGCGTAGTG-C---CCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGC-TAG
* * * * *
15592155 GCATACGGAGTTCATTCCCAGTCTAAGATCAA-ACCGGATTGAGGGTTACGAGAGCAAGATCGGC
697 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAGACCAGACTGAGGGTTACG-CAGCAGGATCGAC
* * * * *
15592219 ACCACACAGGGGGGGACCCGACAAATCCTCGGCTTGCACATCCCGCCCTTCTGGCCGACTGAGCA
760 AACACACAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCCCGCCCTTCTGGCCGACTGAGC-
* * *
15592284 TGCGCACGCTCGTTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCCAGTCCAAGCATATG
824 TGCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CAAGCATA-G
*
15592347 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGTTTACGGCAGCACATGCTGGGCTC-AGC
1 GAGTTCATTCCCAGTCTAAGA-TGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAAGC
* * *
15592411 A-GTG-CTGTGCCGGATTTTT-TTCGTCGAGGCA-CATCGTCGAGAAC-C-TG-CC-GAC-GC-A
65 ATGTGCCCGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGAGAACGCAAGACCTGACGGCGA
* * ** * *
15592466 -ATTGGCGTTCGCAGCAATTGAAGGGGCCGGGGAGGTGTGCGCACTCTGATGT-CAATGGGTGCT
130 CATTGGGGTTC-C-GCGATTGGGGGGGCCGGGGAGGTGTGCGCAC-ATGATGTGCGATGGGTGCT
* *
15592529 GGTACTT-GCCCTTATAATT-GCCCCCTAT-CTTCAGTC-AACCTTGAGAAACTCACA-CCCTTA
192 GGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCA-TCAAACCTCGAG-AACTCACACCCCTTA
* *
15592589 AAGAGCATTT-ATGCAATGTTACA-GTTT-CTGCCATTAGCCATTAAAGTGTCTGAAAT-GGGAC
254 AAGAGCATTTGA-G--ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
15592650 ACTTTTTTCAATTGGTCACAAAAT-TTG-ACACTTTGAG-TTTTAGCTGAATTTTTTGTGTGCCA
316 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TGTG-CA
15592712 TGCCAACAAAAATAC-AGGATCACGTCTACCAATGTTT-GGGCCAAAACTCCTTCCAAAAAAATT
379 TGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * *
15592775 TTAAAAAATCCCCGAACCACAAAAAGTTTTGGAATATCGTTGAACATAA-A-AAAACGAGT-TTC
443 TTAAAAAAT-CCCAAACCGCAAAAAGTTTT-GAAAATCG-TGAA-A-AATAGAAAACGAGTCGTC
15592837 TTAG-CATGAAACTTCACG-GAAGGACTT-A-GGACCATTGTATGAAATTTAAGCAAGGCC-AAA
503 TT-GCCATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATG-AATTT-A-CAA-GCCAAAA
* *
15592897 AATGGCATTGGCACATAAAAATATGAAGATTTTGCCTAAAACCCA-CT-CCACTCTATCGATCCC
562 AATGGCATTGGCACATAAAAATATGAAGA-TGTGCCT-AAACCCACCTACCACCCTATCGAT-CC
* * * * *
15592960 AACGGCTGCGCAGATCCAGTCTCTCTAGCTGGTGTAGTGCCCGCCCGCCTAACTGCCCTCTCGTT
624 -ACGGCTGCGC--ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC---C-GCCCGCTCGTT
* * ** ** * **
15593025 TTGTCGGTTGGCTAGGGCATACGGGGTTCATTCTCAGTCTAAGATTGGACCAGACCAATGGTTGT
682 TTGTCGGTTGGCTA-GGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACTGAGGGTTAC
* ** ** * * * **
15593090 GCTAGCAGGATCAACAGTATGCAGAGGGAGACCCGACCGATCCTCGGCTTACGTATCCCGCCCCA
746 GC-AGCAGGATCGACAACACACAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCCCGCCCTT
* * * *
15593155 CTGG-CTAGTTGAG-TGCCCGCAGGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
810 CTGGCCGA-CTGAGCTG--CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
15593218 CAGT----C-TA-
872 CAGTCAAGCATAG
* * *
15593225 -AG---------A-TC---G--GGA-CAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCA
1 GAGTTCATTCCCAGTCTAAGATGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAAGCA
* * *
15593273 TGTGCCCGTGCCATATTTTTCTTCGTCGCGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACT
66 TGTGCCCGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTC-GAG-AACG-CA-AG-ACCTGAC-
*
15593338 GGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGT
125 GGCGACATTGGGGTTCC-GCGATTGGGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGT
*
15593402 GCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTTC-AGAACTCACACCCCCT
189 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACA-CCCCT
* *
15593466 TAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
252 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
15593531 CTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAATTTTTAGCTGAATTTTATTGTGCATGC
317 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
15593596 CAACAAAAATACAAGGATCACCTCTAGCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAA
382 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* * * * *
15593661 AAAATCTCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGA
447 AAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
15593726 AACTTCACGTGAAGGATTAAGGGATCATAGAATGAATTTACAAGCCATAAAAATGGCATTGG-A-
512 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCAC
* *
15593789 ATGCAAAAATATGAAGATGTG-CTGAAACCCACCTGCCACCCTATCGATCCACGGCTTACGCATC
576 AT--AAAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGC-TGCGCATC
* * ** *
15593853 CCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCATCGATTGGCTTAG
637 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CCCGCTCGTTTTGTCGGTTGGC-TAG
* * * *
15593918 GCATACAGAGTTCATT-CCAGTCTAAGAT-CGACCAAACCGAGGGTT
697 GCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACTGAGGGTT
15593963 GCGGCAGGAC
Statistics
Matches: 2152, Mismatches: 249, Indels: 263
0.81 0.09 0.10
Matches are distributed among these distances:
860 31 0.01
861 7 0.00
862 3 0.00
863 12 0.01
864 12 0.01
865 7 0.00
866 3 0.00
867 4 0.00
868 1 0.00
869 1 0.00
871 1 0.00
873 3 0.00
874 4 0.00
875 19 0.01
876 44 0.02
877 116 0.05
878 46 0.02
879 73 0.03
880 114 0.05
881 127 0.06
882 127 0.06
883 114 0.05
884 72 0.03
885 42 0.02
886 220 0.10
887 43 0.02
888 13 0.01
889 1 0.00
890 2 0.00
891 2 0.00
893 1 0.00
895 1 0.00
897 1 0.00
898 2 0.00
899 16 0.01
900 519 0.24
901 94 0.04
902 3 0.00
903 8 0.00
904 234 0.11
905 8 0.00
906 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (884 bp):
GAGTTCATTCCCAGTCTAAGATGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAAGCA
TGTGCCCGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGAGAACGCAAGACCTGACGGCGAC
ATTGGGGTTCCGCGATTGGGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCA
AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAATGGCATTGGCACATAAAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTAGGCATACGGAGTTCATTCCC
AGTCTAAGATAAGACCAGACTGAGGGTTACGCAGCAGGATCGACAACACACAGAGGGGGACCCGA
CCAATCCTCGGCTTACGCATCCCGCCCTTCTGGCCGACTGAGCTGCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCAAGCATAG
Found at i:15595657 original size:26 final size:26
Alignment explanation
Indices: 15595627--15595679 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15595617 TGGGACTTAG
*
15595627 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15595653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15595679 G
1 G
15595680 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15596565 original size:26 final size:26
Alignment explanation
Indices: 15596535--15596587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15596525 GTTGACTTAG
*
15596535 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15596561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15596587 G
1 G
15596588 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15597460 original size:26 final size:26
Alignment explanation
Indices: 15597431--15597480 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15597421 GACTTAGGCC
* *
15597431 TACGGAGTTTATTTCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
15597457 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15597481 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15598487 original size:26 final size:26
Alignment explanation
Indices: 15598451--15598503 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598441 GTTGACTTAG
15598451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15598477 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15598503 G
1 G
15598504 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15599392 original size:26 final size:26
Alignment explanation
Indices: 15599354--15599404 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15599344 GTTGACTTAG
*
15599354 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15599380 GCATACGGGGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15599405 TGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15599780 original size:903 final size:900
Alignment explanation
Indices: 15598022--15601023 Score: 4046
Period size: 900 Copynumber: 3.3 Consensus size: 900
15598012 AAATATTTTA
* * *
15598022 AAAAATCCTTCC-AAAAATATTTTAAAAAATCTTGAACCTTAAAAAGTTTCAAAAATCATGAAAA
1 AAAACTCCTTCCGAAAAA-ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
15598086 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGGATTT
65 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
15598151 ACAAGCCATAAAAATGTCATTGGCATGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCC
130 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * *
15598216 TATCGATCCACGGTTTGCGCATCCCTTCTCTCTGGCCGGCGTAGTG--C-CC-ACCT---G--T-
195 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTCCCGCCTG
* * * * * **
15598271 -TAGTTTCGTCGGTTGGCTCAGGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGATCGAG
260 CTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCGGCCGAG
* * ** * * * *
15598335 GGTTACGGCAACAGGATCGACAACACGCAGAGGGGGTCCCGGCCAATCCCCGGCTTACGCATCCC
325 GGTTGCGGCAACAGGATCGGCAGGACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCCC
* * *
15598400 GCCCCTTTCGCCGGTTGAGCGCCCGCACTCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
390 GCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
15598465 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCCGACCAGACCAAGGGTTACAACA
455 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGA-CAAGGGTTGCAGCA
* ** * * * * *
15598530 GCACATACTGGGCCCGAGCATGTG-TCAGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGA
519 GCACATGCTGGGCATGGGCATGTGCT-GGTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGA
* * * *
15598594 CCATCGCCGAAAAACCTGACCGGCGACATTGGGGTTCCTGCGATCGGGGGGGCCGGGAGGGTGTG
583 GCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGGG-GGGTGTG
* *
15598659 CGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCATATCCCTCATCAAAC
647 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
15598724 CTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
712 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
15598789 CAGTGTCTGAAATGGGGACATTTTTTTCAAATTGTCACAACATCTTGTACACTTCGAGTTTTTAG
777 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
15598854 CTGAATTTTTTAT-GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
842 CTGAATTTTTT-TGGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* ** * *
15598913 AAAACTCCTTCCGAAAAACTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAC
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
15598978 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
15599043 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCT
131 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
15599108 ATCGATCCACGACTTGCGGATCCCGTCTCTCTGGCCGACATAGTGCCCGCCTGCCCTCCCGCCTG
196 ATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG-CCTCCCGCCTG
* * *
15599173 CTCGTTTCGTTGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCAAAGATCAGACCCGGCCGA
260 CTCGTTTCATCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCCGGCCGA
* * * * * * *
15599237 TGGTTGCGGCAGCAGGATTGGCAGGATGCAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCC
324 GGGTTGCGGCAACAGGATCGGCAGGACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCC
* *
15599302 CGCCCCTCTGGCCGGTTGAGCGCCCGTACACTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
389 CGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
15599367 ATTCCTAGTCTAAGCATACGGGGTTCATTCCCAGTCTATGATCGGACTAGACTGAGGGTTGCCGC
454 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGAC-AAGGGTTGCAGC
*
15599432 AGCACATGCTAGGCATGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGA
518 AGCACATGCTGGGCATGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGA
* * * *
15599497 GCATTGCCGGAGAACCTGACCCGCAACATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGC
583 GCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGC
15599562 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
648 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
15599627 TCGAGAACTCACACCCCCTTGAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
713 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * * *
15599692 AATATCTGAAATTGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTAGATTTTTTAGC
778 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
15599757 TGAATTTTTTTGGGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
843 TGAATTTTTTT-GGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** * *
15599816 AAAACTCCTTCAAAAAAAATTTTAAAAAAT-TCGAACC-TCAAAAACTTTCAAAAATCGTGAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCATGAAAA
* * *
15599879 ATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCTTTGTATGAATTT
65 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
15599944 ACGAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AACCCACCTACCACCC
130 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
15600008 TATCGATCCATGGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGTCCGCCC
195 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCT-CCCG-CC
* * * * *
15600073 CGCTTGTTTCATCTGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CCGGACT
258 TGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCGG-CC
* * * * *
15600137 GAGGGTTGGGGCAATAGGATCGGCAGCG-CGTAGA-AGGGACCCAACCAATCCCCGACTTGCGCA
322 GAGGGTTGCGGCAACAGGATCGGCAG-GACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCA
* ** * * * ** * * *
15600200 TCCTGCCCCTCTGGCCGACTGGGTG-CCGCACGCTCGTTTTACGAGTGGACTTAGGCATACAGAG
386 TCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAG
* * *
15600264 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAAAACAAGGGTTGC
451 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAAGACAAGGGTTGC
* * * * **
15600329 GGCAGCACATGCTGGGCTTTGTCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCG-
515 AGCAGCACATGCTGGGCATGGGCATGTGCTGGTG-CAGCATTTTTCTTCACCGGGGCACCATCGT
* * * * * * * *
15600392 CAGAAGAATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGGTCGGGGGG
579 C-GGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGG
* *
15600457 TGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTTATCCCTCAT
643 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCAT
* *
15600522 CAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
707 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
15600587 CATTAAAGTGTCTGAAATGGGGACACTTTTCTCATATGGTCACAAAATCTTGTACACTTCGAGTT
772 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
15600652 TTTAGCTG-ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
837 TTTAGCTGAATTTTTTTG-GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
15600716 AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CTGAACCGT-AAAAGTTTTAAAAATCATGAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
15600779 ATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTT
65 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
15600844 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTTCTTAAACCCACCTACCACCT
130 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
15600909 TATCGATCCAC-AGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCG-CTCGTCCGCCCGC
195 TATCGATCCACGA-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-G-CCTCCCGC
* * *
15600972 TTGCTCGTTTCATCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAG
257 CTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
15601024 CATACGGAGT
Statistics
Matches: 1847, Mismatches: 228, Indels: 63
0.86 0.11 0.03
Matches are distributed among these distances:
891 210 0.11
892 5 0.00
893 1 0.00
894 2 0.00
896 3 0.00
899 3 0.00
900 494 0.27
901 325 0.18
902 411 0.22
903 392 0.21
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (900 bp):
AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTCCCGCCTGC
TCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCGGCCGAGG
GTTGCGGCAACAGGATCGGCAGGACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCCCG
CCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACAAGGGTTGCAGCAGC
ACATGCTGGGCATGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCA
TCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
Found at i:15600290 original size:26 final size:26
Alignment explanation
Indices: 15600254--15600306 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15600244 GTGGACTTAG
15600254 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15600280 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15600306 G
1 G
15600307 ATTGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15601031 original size:26 final size:26
Alignment explanation
Indices: 15600997--15601049 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15600987 GTTGGCTTAG
*
15600997 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15601023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15601049 G
1 G
15601050 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15602487 original size:705 final size:706
Alignment explanation
Indices: 15601127--15603150 Score: 2812
Period size: 705 Copynumber: 2.8 Consensus size: 706
15601117 AAGCCGGGTT
*
15601127 GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCA
15601192 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
65 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-GTAG
*
15601257 CCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
129 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
15601322 TTTTAGCTGATTTTTTTTGTGCATACCAACAAATAATACAAGGATCAC-TCCTACCAAGTTTGGG
194 TTTTAGCTGATTTTTTTT-TGCATGCCAACAAA-AATACAAGGATCACGT-CTACCAAGTTTGGG
* * *
15601386 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAA
256 TCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAA
* * * * * *
15601451 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCTTGAAGGGTTAAGGGACCATTGTAGGAAA
321 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
15601516 TTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAG
386 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * *
15601581 CCTATTGATTCACGGCTTGCGCATCTCGTCTCTCTGGCC-AGTGTAGTGCCCGCACACCCTTCCT
451 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-TGTAGTGCCCGCCCGCCCGTCCG
* * * * * * * *
15601645 CCCGTTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGATCGGACTGGAC
515 CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGAC-CGAC
** * ***
15601710 TGAGGGTTGGGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGTATTTTTCTTCGCCGGGG
579 TGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGG
* *
15601775 -GA-C-C-ATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGG
644 CCATCGCGATCGCCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGG
* *
15601835 GGTGTGCGCACATGATATGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCA
*
15601900 TCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGTAGC
65 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGTAGC
* *
15601965 CATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTT
130 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
15602030 TTTAGCTGATTTTTTTTTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTTCCA
195 TTTAGCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCA
* * *
15602095 AAACTCCTTCTGGAAAAATTTTAAAAAATCCTGAACCGCAAAATA-TTTGGAAAATCGTGAAAAA
260 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAA-AGTTTCGAAAATCGTGAAAAA
* * *
15602159 TTGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
15602224 CAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCGACCACCCT
389 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
15602289 ATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACT-TAGTGCCCGCCCGCCCGTCCGCCT
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-TGTAGTGCCCGCCCGCCCGTCCGCCT
* * * *
15602353 GCTCATTTCGTCAGTTGGCTTAGTCGTACGGAGTTCATTCCCAGTCTAATATCAGACCGCACTGA
518 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCG-ACTGA
*
15602418 GGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGGCAC
582 GGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGG--C
* * * * *
15602483 CATCGTCGGAGAATCGCCGGAGAACTTGACTGGCGGCATTAGGGTTCCGATGATCGGGGGGTCCG
645 CATCG-C---G-ATCGCCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCG
15602548 GG
705 GG
* * * *
15602550 GGCTGTACACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCTC
1 GG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTC
* * * * * *
15602615 AACAAACCTCAAGAACTCATACCCACTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTA
64 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCGTA
*
15602680 GCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
128 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
15602745 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGG
193 TTTTTAGCTG-ATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGG
* * * **
15602810 T-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCATGAACGGCAAAAAGTTTCAAAAATTATGAA
256 TCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAA
* *
15602874 AAATAGAAAACGAGTCATCTTG-CAGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAA
321 AAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
15602938 TTTACAAGCCACAAAAATGGCATTGGCACGCAAAAAATATGAAGATGCGCCTAAACCCAACTACC
385 TTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACC
** * *
15603003 ACCCTATCGATCCACGGCTTGCGCATCCCGT-TCCTCTGGTAGATGTAGTGCCCGCCCGCCTGCC
449 ACCCTATCGATCCACGGCTTGCGCATCCCGTCT-CTCTGGCCGATGTAGTGCCCGCCCGCCCGTC
* * ** * *
15603067 CG-CTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATAACCAGTTTAAAATTAGACCA
513 CGCCT-GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACC-
15603131 GACTGAGGGTTGCAGCAGCA
576 GACTGAGGGTTGCAGCAGCA
15603151 GGATCGATAG
Statistics
Matches: 1169, Mismatches: 119, Indels: 45
0.88 0.09 0.03
Matches are distributed among these distances:
704 1 0.00
705 363 0.31
706 16 0.01
707 86 0.07
708 119 0.10
709 1 0.00
711 1 0.00
715 7 0.01
716 152 0.13
717 79 0.07
718 185 0.16
719 158 0.14
720 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (706 bp):
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGTCCGCCTGCT
CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGACTGAGGGT
TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGGCCATCGC
GATCGCCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGG
Found at i:15604180 original size:26 final size:26
Alignment explanation
Indices: 15604151--15604200 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15604141 GACTTAGGCC
* *
15604151 TACGGAGTTTATTTCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
15604177 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15604201 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15605206 original size:26 final size:26
Alignment explanation
Indices: 15605170--15605222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15605160 GTTGACTTAG
*
15605170 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15605196 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15605222 G
1 G
15605223 ATCCGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15606109 original size:26 final size:26
Alignment explanation
Indices: 15606073--15606123 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15606063 GTTGACTTAG
*
15606073 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15606099 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15606124 TGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15606499 original size:903 final size:891
Alignment explanation
Indices: 15604741--15607657 Score: 3139
Period size: 903 Copynumber: 3.3 Consensus size: 891
15604731 AAATATTTTA
* * * *
15604741 AAAAATCCTTCC-AAAAATATTTTAAAAAATCTTGAACCTTAAAAAGTTTCAAAAATCATGAAAA
1 AAAACTCCTTCCGAAAAA-ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAA
* *
15604805 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGGATTT
65 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
15604870 ACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCC
130 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * *
15604935 TATCGATCCACGGTTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCT--------G-T-
195 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTG
* * * **
15604990 -TAGTTTCGTCGGTTGGCTCAGGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGATTGAG
260 CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGGCTGA-
** * ** * * ** *
15605054 GGTTATGGCAACAGGATCGACAACACGTAGAGGGGGTCCCGGCCAATCCCCGGCTTACGCATCCC
324 GGTTGCGGC-ACAGGATCGGCAGGA-GCAGAGGGGGACCCGAACAATCCCCGACTT-CGCATCCC
* * *
15605119 GCCCCTTTCGCCGGTTGAGCGCCCGCACTCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
386 GCCCCTCTGGCCGGTTGAGCGCCCG-ACACT-GTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* *
15605184 TT-CTCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCCGACCAGACCAAGGGTT-ACGA
449 TTCCT-AGTCTAAGCATACGGAGTTCATTCCCAG-TTATGAT-CGACCAGA-C-AGGGTTGCCG-
* ** * * * *
15605247 CAGCACATACTGGGCCCGAGCATGTG-TCAGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCG
508 CAGCACATGCTGGGCATGGGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCG
* * * *
15605311 GACCATCGCCGAAAAACCTGACCGGCGACATTGGGGTTCCTGCGATCGGGGGGGCCGGGAGGGTG
572 GAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGGG-GGGTG
* *
15605376 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCATATCCCTCATCAA
636 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
15605441 ACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
701 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
15605506 TACAGTGTCTGAAATGGGGACATTTTTTTCAAAT-TGTCACAACATCTTGTACACTTCGAGTTTT
766 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGT-TCACAAAATCTTGTACACTTCGAGTTTT
*
15605570 TAGCTGAATTTTTTAT-GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
830 TAGCTGAATTTTTT-TGGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
15605632 AAAACTCCTTCCGAAAAACTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAA
* *
15605697 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
15605762 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCCTAAACCCACCGACCACCCT
131 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
15605827 ATCGATCCACGACTTGCGGATCCCGTCTCTCTGGCCGACATAGTGCCCGCCTGCCCTCCCGCCTG
196 ATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCG-CTG
* * * *
15605892 CTCGTTTCGTTGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCAAAGATCAGACCCGGCCGA
260 CTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGGCTGA
* * *
15605956 TGGTTGCGGCAGCAGGATCGGCAGGATGCAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCC
324 -GGTTGCGGCA-CAGGATCGGCAGGA-GCAGAGGGGGACCCGAACAATCCCCGACTT-CGCATCC
15606021 CGCCCCTCTGGCCGGTTGAGCGCCCGTACACTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
385 CGCCCCTCTGGCCGGTTGAGCGCCCG-ACAC-TGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
*
15606086 ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACTAGACTGAGGGTTGCCGC
448 ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGT-TATGATC-GACCAGAC--AGGGTTGCCGC
*
15606151 AGCACATGCTAGGCATGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGA
509 AGCACATGCTGGGCATGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGA
* * * *
15606216 GCATTGCCGGAGAACCTGACCCGCAACATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGC
574 GCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGC
15606281 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
639 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
15606346 TCGAGAACTCACACCCCCTTGAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
704 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * * *
15606411 AATATCTGAAATTGGGACACTTTTTTCAAATGTTGACAAAATCTTGTACACTTAGATTTTTTAGC
769 AGTGTCTGAAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
15606476 TGAATTTTTTTGGGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
834 TGAATTTTTTT-GGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** * * *
15606535 AAAACTCCTTCAAAAAAAATTTTAAAAAATTTCGAACC-TCAAAAACTTTTCAAAAATCGTTG-A
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTT-AAAAATC-ATGAA
* * *
15606598 AAATACAAAAC--GTCGTCTTGCCATG-AACTTC-CGTGAA-GCTTAATGGACCATTGTATG-GT
63 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
15606657 TTACGAGCCATATAACAATATGCATT-GCATGCAGTCAATATGAAGATGTGCCT-AACCCACCTA
128 TTACAAGCCATA-AA-AAT-GGCATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTA
* * *
15606720 CCACCCGATCGATCCATGGC-TGCGCAT-CCGTCTCTCTGGCCGGC-TAGTGCGCCCGCCTGCCC
189 CCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--GCCCGCCTGCCC
* * * * * *
15606782 GGCC-C-GCT-GATTCTTCTGTTAG-TTAGGCATACGAAGTTCATT--CAGTCTAAGATTA-ACC
252 GCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
* ** * *
15606840 AGGACTGAAGTTGCAGGC-CATAATC-GCAGG-GC-GTA-GGGGA-CC-AACCATCCTCGACTTC
317 AGG-CTGAGGTTGC-GGCACAGGATCGGCAGGAGCAG-AGGGGGACCCGAACAATCCCCGACTTC
* * * * * ** *
15606898 GCATCCTGCCACTCTGCAGACGG-T--GC-CCC-ACGC--TCTT-TACGATGACTTAGGC-TAC-
379 GCATCCCGCCCCTCTG--GCCGGTTGAGCGCCCGACACTGTTTTGTGGGTTGACTTAGGCATACG
* * * *
15606953 GATTTC--TCC-AG-CT--G-AT-C--A----A-----A-TTCTGAT-GACCAAACAGGG-TGCG
442 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTTATGATCGACCAGACAGGGTTGCC
* * * * **
15606996 GCAGCACATGCTGGGCTTTGTCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CA
507 GCAGCACATGCTGGGCATGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTC-
* * * * * * * *
15607060 GAAGAATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGGTCGGGGGGGT
571 GGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGG-CCGGGGGGT
* *
15607125 GTTCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTTATCCCTCATC
635 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATC
* *
15607190 AAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
699 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
15607255 ATTAAAGTGTCTGAAATGGGGACACTTTTCTCATATGGTCACAAAATCTTGTACACTTCGAGTTT
764 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTT
*
15607320 TTAGCTG-ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT-GGG--
829 TTAGCTGAATTTTTTTG-GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
15607380 ------------G-----------------CT-GAACCGT-AAAAGTTTTAAAAATCATAAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAA
* *
15607414 TAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
15607479 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTTCTTAAACCCACCTACCACCTT
131 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
15607544 ATCGATCCAC-AGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCG-CTCGTCCGCCCGCT
196 ATCGATCCACGA-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-GCCCGCCCGCT
* * *
15607607 CGCTCGTTTCATCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAG
259 -GCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
15607658 CATACGGAGT
Statistics
Matches: 1751, Mismatches: 209, Indels: 198
0.81 0.10 0.09
Matches are distributed among these distances:
812 1 0.00
813 18 0.01
814 8 0.00
815 18 0.01
816 27 0.02
817 44 0.03
818 38 0.02
819 28 0.02
820 4 0.00
821 3 0.00
822 10 0.01
823 18 0.01
825 9 0.01
846 1 0.00
847 106 0.06
848 109 0.06
849 134 0.08
850 6 0.00
852 5 0.00
853 1 0.00
854 1 0.00
859 1 0.00
863 1 0.00
865 1 0.00
866 2 0.00
867 1 0.00
869 2 0.00
870 2 0.00
871 3 0.00
873 5 0.00
874 3 0.00
875 12 0.01
876 3 0.00
879 3 0.00
881 3 0.00
882 2 0.00
883 14 0.01
884 13 0.01
885 6 0.00
886 6 0.00
887 3 0.00
889 5 0.00
890 5 0.00
891 228 0.13
892 22 0.01
894 18 0.01
895 10 0.01
896 3 0.00
897 5 0.00
898 28 0.02
899 41 0.02
900 41 0.02
901 29 0.02
902 216 0.12
903 400 0.23
904 23 0.01
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (891 bp):
AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTGC
TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGGCTGAGG
TTGCGGCACAGGATCGGCAGGAGCAGAGGGGGACCCGAACAATCCCCGACTTCGCATCCCGCCCC
TCTGGCCGGTTGAGCGCCCGACACTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG
TCTAAGCATACGGAGTTCATTCCCAGTTATGATCGACCAGACAGGGTTGCCGCAGCACATGCTGG
GCATGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAG
AACCTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
Found at i:15607665 original size:26 final size:26
Alignment explanation
Indices: 15607631--15607683 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15607621 GTTGGCTTAG
*
15607631 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15607657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15607683 G
1 G
15607684 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15609122 original size:706 final size:705
Alignment explanation
Indices: 15607761--15609785 Score: 2787
Period size: 706 Copynumber: 2.8 Consensus size: 705
15607751 AAGCCGGGTT
*
15607761 GGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCA
15607826 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
65 TCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
15607891 CCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
129 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
15607956 TTTTAGCTGATTTTTTTTGTGCATACCAACAAATAATACAAGGATCAC-TCCTACCAAGTTTGGG
194 TTTTAGCTGATTTTTTTT-TGCATGCCAACAAA-AATACAAGGATCACGT-CTACCAAGTTTGGG
* * *
15608020 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-TTCGAACCGCAAAAAGTTTTGAAAATTGTGA
256 TCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCAT-GAACCGCAAAAAGTTTCGAAAATTGTGA
* * * * *
15608084 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCTTGAAGGGTTAAGGGACCATTGTAGGAA
320 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
15608149 ATTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
385 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
15608214 GCCTATTGATCCACGGCTTGCGCATCTCGTCTCTCTGGCC-AGTGTAGTGCCCGCACACCCGCCC
450 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-TGTAGTGCCCGCCCGCCCGCCC
* * * * * * * *
15608278 TCCCGTTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGATCGGACCGGA
514 GCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACC-GA
** * ***
15608343 CTGAGGGTTGGGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGTATTTTTCTTCGCCGGG
578 CTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGG
* * *
15608408 GGACCATCG-C-CAA-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGG
643 GCACCATCGTCGCAACAGAACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGG
* * * *
15608469 GGTGTGCGCACATGATATGCGATGGGTACTGGTTCTTGGCCCTTATATTGGCCTCCTATCCCTCA
1 GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCA
*
15608534 TCAAACCTCGACAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
65 TCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
15608599 CCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGT
129 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
15608664 TTTTAGCTGATTTTTTTTTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTTCC
194 TTTTAGCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCC
* * * * *
15608729 AAAACTCCTTCTGGAAAAATTTTAAAAAATCCTGAACCGCAAAATA-TTTGGAAAATCGTGAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCATGAACCGCAAAA-AGTTTCGAAAATTGTGAAAA
* * *
15608793 ATCGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTT
323 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *** *
15608858 ACAAGCCATAAAAATTGCATTGGCATACAGAAATATGAAGATGTAAGTAAACCCACCGACCACCC
388 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
15608923 TATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACT-TAGTGCCCGCCCGCCCGTCCGCC
453 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-TGTAGTGCCCGCCCGCCCGCCCGCC
* * * *
15608987 TGCTCATTTCGTCAGTTGGCTTAGTCGTACGGAGTTCATTCCCAGTCTAATATCAGACCGCACTG
517 TGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCG-ACTG
* *
15609052 AGGGTTGTAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGGCA
581 AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGGCA
* * * * *
15609117 CCATCGTCGGAGAATCGCCGGAGAACTTAACTGGCGGCATTAGGGTTCCGATGATCGGGGGGTCC
646 CCATCGTC-G-CAA----C--AGAACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCC
15609182 GGG
703 GGG
* * * *
15609185 GGCTGTACACACATGATGTGTGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCTTGTCCCTC
1 GG-TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTC
* * * * *
15609250 AACAAACCTCAAGAACTCATACCCACTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTA
64 ATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
15609315 GCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
128 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
15609380 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGG
193 TTTTTAGCTG-ATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGG
* * * *
15609445 T-CAAAAATCCTTCCGAAAAAATTTTAAAAAATCATGAACGGCAAAAAGTTTCAAAAATTATGAA
256 TCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCATGAACCGCAAAAAGTTTCGAAAATTGTGAA
*
15609509 AAATAGAAAACGAGTCATCTTG-CAGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
321 AAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
15609573 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAATATGAAGATGCGCCTAAACCCACCTACC
385 TTTACAAGCCATAAAAATGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACC
* *
15609638 ACCCTATCGATCCACGGCTTGCGCATCCCGT-TCCTCTGGTCGATGTAGTGCCCGCCCGCCTGCC
449 ACCCTATCGATCCACGGCTTGCGCATCCCGTCT-CTCTGGCCGATGTAGTGCCCGCCCGCCCGCC
* * ** * *
15609702 CG-CTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATAACCAGTTTAAAATTAGACCA
513 CGCCT-GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACC-
15609766 GACTGAGGGTTGCAGCAGCA
576 GACTGAGGGTTGCAGCAGCA
15609786 GGATCGATAG
Statistics
Matches: 1161, Mismatches: 126, Indels: 49
0.87 0.09 0.04
Matches are distributed among these distances:
705 1 0.00
706 366 0.32
707 24 0.02
708 196 0.17
710 2 0.00
716 7 0.01
717 220 0.19
718 188 0.16
719 156 0.13
720 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (705 bp):
GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCATGAACCGCAAAAAGTTTCGAAAATTGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCCTGCT
CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGACTGAGGGT
TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGGCACCATC
GTCGCAACAGAACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGG
Found at i:15611176 original size:896 final size:896
Alignment explanation
Indices: 15609014--15611547 Score: 3616
Period size: 896 Copynumber: 2.8 Consensus size: 896
15609004 GGCTTAGTCG
* ***
15609014 TACGGAGTTCATTCCCAGTCTAATATCAGACCGCACTGAGGGTTGTAGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAATATCGGACCG-ACTGAGGGTTACGGCAGCACATGCTGGGCTC
* * * *
15609079 GGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCGCCGGAGAACT
65 GGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGCTGGAGAACC
* * * * * *
15609144 TAACTGGCGGCATTAGGGTTCCGATGATCGGGGGGTCCGGGGGCTGTACACACATGATGTGTGAT
130 TGACCGGCGGCATT-GGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGAT
* * * * * *
15609209 GGGTGCTCGTACTTGGCCCTTATATTGGCCCCTTGTCCCTCAACAAACCTCAAGAACTCATACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
15609274 ACTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
15609339 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCA
* * *
15609404 TGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGTCAAAAATCCTTCCGAAAAAATTT
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
15609469 TAAAAAATCAT-GAACGGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATCTTG-C
453 TAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
15609532 AGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 A-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
15609597 GGCACGCAGAAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
581 GGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
* * * * *
15609662 ATCCCGT-TCCTCTGGTCGATGTAGTGCCCGCCCGCCTGCCCGCTCGCTCGTTTCATCGGTTGGC
645 ATCCCGTCT-CTCTGCTAG-CGTAGTGCCCGCCCGCCCGCCCGCT--CTCGTTTCGTCGGTTGGC
** ** **
15609726 TTAGGCATACGGAGTTCATAACCAGTTTAAAATTAGACCAGACTGAGGGTTGCAGCAGCAGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCCAAAATTAGACCAGACCAAGGGTTGCAGCAGCAGGATC
* * * * *
15609791 GATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTACCCCTATGGTCGGCTGA
771 GACAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTACGCATCC-ACCCCTAAGGCCGGCTGA
*
15609856 GCGCCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
835 GCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
* * ** * * * *
15609918 TACGAAGTTCGTTTGCAGTCTAATATCGAACTGGA-TCGAGGGGTACGACAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAATATCGGAC-CGACT-GAGGGTTACGGCAGCACATGCTGGGCT
* * *
15609982 CGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCG-TCGGAGAA
64 CGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGCT-GGAGAA
* * * *
15610046 CCTGACCGGCTGCATTGGGGTTCTGATGATCGGGGTGGCTGGGGGGTGTGCACACATGATGTGCG
128 CCTGACCGGCGGCATT-GGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
* * * *
15610111 ATTGATGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCCCA-
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15610175 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGTCATTTAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
15610240 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTATTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT-TTTTTGTG
* * * * *
15610305 CATGCCAACAAAAATACACGGATCATGTCTACCATGTTTGGGACCAAAACTCCTTCCAAAAAAAT
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
15610370 TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
451 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
15610435 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
**
15610500 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
581 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
* *
15610565 TCCCGTCTCTCTAGCTAGCGTAATGCCTGCCCGCCCGCCCGCT-T-GTTTCGTCGGTTGGCTTAG
646 TCCCGTCTCTCT-GCTAGCGTAGTGCCCGCCCGCCCGCCCGCTCTCGTTTCGTCGGTTGGCTTAG
* ** * ** **
15610628 GCATATGGAGTTCATTCCCAGTCCAAGTTTGGACTGGACCAAGGGTTGTGGCAGCAGGATCGACA
710 GCATACGGAGTTCATTCCCAGTCCAAAATTAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACA
* * * * *
15610693 GCATGCAGAGGGGGACCAGGTTGATCTCTGGCTTATGCATCC-CCCCTAAGGCCGGCTGAGCGCC
775 GCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTACGCATCCACCCCTAAGGCCGGCTGAGCGCC
*
15610757 CGCACGCTCGTTTCGTTG-GTTGACTTAGGCATGCGGAGTTCATTCCTAGTCTAAGCA
840 CGCACGCTCGTTTCG-TGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
* * * * *
15610814 TACGGATTTAATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCACATGCTGGGCTT
1 TACGGAGTTCATTCCCAGTCTAATATCGGACC-GACTGAGGGTTACGGCAGCACATGCTGGGCTC
* * *
15610879 GAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGCTTGAGAACC
65 GGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGCTGGAGAACC
* * *
15610944 TGACCAGCGGCATTGCAGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGAT
130 TGACCGGCGGCATTG-GGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGAT
* * *
15611009 GGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAGTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
15611074 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
15611139 ACACTTTTTTCAAATGGTCACAAAAT-TTGTGCACTTCGAGTTTTTCGTTGATTTTTTTATGCAT
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCAT
15611203 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* **
15611268 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAGTGAGTCATCTTGCCAT
454 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
*
15611333 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
15611398 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACGTCC
584 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
**
15611463 CGTCTCTCTGGCCGGCAG-AGTGCCCGCCCGCCCGCCCGCTCACTCGTTTCGTCGTGTTGGCTTA
649 CGTCTCTCT-GCTAGC-GTAGTGCCCGCCCGCCCGCCCGCT--CTCGTTTCGTCG-GTTGGCTTA
15611527 GGCATTACGGAGTTTCATTCC
709 GGCA-TACGGAG-TTCATTCC
15611548 TAGGTCTAAG
Statistics
Matches: 1447, Mismatches: 161, Indels: 46
0.87 0.10 0.03
Matches are distributed among these distances:
895 290 0.20
896 315 0.22
897 91 0.06
898 104 0.07
899 10 0.01
900 13 0.01
901 6 0.00
902 97 0.07
903 306 0.21
904 214 0.15
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TACGGAGTTCATTCCCAGTCTAATATCGGACCGACTGAGGGTTACGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGCTGGAGAACCT
GACCGGCGGCATTGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
TCTCTCTGCTAGCGTAGTGCCCGCCCGCCCGCCCGCTCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCCAAAATTAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGC
AGAGGGGGACCAGGTCGATCCCCGGCTTACGCATCCACCCCTAAGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
Found at i:15611949 original size:26 final size:26
Alignment explanation
Indices: 15611910--15611961 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15611900 ACTTGGCCCA
* * *
15611910 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGATCATTCCCAATCTAAG
*
15611936 CATACGAAGATCATTCCTAATCTAAG
1 CATACGAAGATCATTCCCAATCTAAG
15611962 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGAAGATCATTCCCAATCTAAG
Found at i:15612853 original size:26 final size:26
Alignment explanation
Indices: 15612813--15612865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15612803 GTTGACTTAG
* *
15612813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
15612839 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
15612865 G
1 G
15612866 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:15613105 original size:26 final size:26
Alignment explanation
Indices: 15613065--15613117 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15613055 TACTTGGCCC
* * *
15613065 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGATCATTCCCAATCTAA
*
15613091 GCATATGGAGATCATTCCCAATCTAA
1 GCATACGGAGATCATTCCCAATCTAA
15613117 G
1 G
15613118 ATCAGAACAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAATCTAA
Found at i:15613267 original size:252 final size:248
Alignment explanation
Indices: 15612813--15613306 Score: 615
Period size: 252 Copynumber: 2.0 Consensus size: 248
15612803 GTTGACTTAG
* * * * *
15612813 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATCAGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAGATCAGAACAGAC
* * *
15612878 CGAGGGTTACGGTAGCACATGCTGGCCTTGCGCATGTACTGGTGCCACATTTTTCTTCATCGGGG
66 CGAGGGTTACGGCAGCACATGCTGGCCTCGCGCATGTACTGGTGCCACATTTTTCTTCATCCGGG
* ** * **
15612943 CACCATCACCGGAGCATCGTAGGAGAACTTGACCCCTGACTGGCGGCATTGGGGTTCCGATGATT
131 CACCATCACCAGAGCATCCCAGGAGAACTTGA--CC--ACTGGAGGCATTGGGGTTCCGATGAGG
15613008 GGGGGGGTCGGGGCGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCC
192 GGGGGGGTCGGGGCGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCC
* **
15613065 GCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGATCATTCCCAATCTAAGATCAGAACAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAGATCAGAACAGAC
* * * *
15613130 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCA-CCGGG
66 CGAGGGTTACGGCAGCACATGCTGGCCTCGCGCATGTACTGGTGCCACATTTTTCTTCATCCGGG
** ** ***
15613194 CACCATTGCCAGAGCATCACCA-GAGAACTTGA-C-C-GGAGGCATTGGGGTTCCGACAATCAGG
131 CACCATCACCAGAGCATC-CCAGGAGAACTTGACCACTGGAGGCATTGGGGTTCCGATGAGGGGG
* * *
15613255 GGGG-CTGGG-GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCC
195 GGGGTCGGGGCGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCC
15613307 TTATATTGGC
Statistics
Matches: 213, Mismatches: 28, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
242 41 0.19
243 4 0.02
244 26 0.12
245 1 0.00
248 1 0.00
251 29 0.14
252 111 0.52
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.23
Consensus pattern (248 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAGATCAGAACAGAC
CGAGGGTTACGGCAGCACATGCTGGCCTCGCGCATGTACTGGTGCCACATTTTTCTTCATCCGGG
CACCATCACCAGAGCATCCCAGGAGAACTTGACCACTGGAGGCATTGGGGTTCCGATGAGGGGGG
GGGTCGGGGCGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCC
Found at i:15614880 original size:26 final size:26
Alignment explanation
Indices: 15614844--15614896 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15614834 GTTGACTTAG
15614844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15614870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15614896 G
1 G
15614897 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15616743 original size:876 final size:875
Alignment explanation
Indices: 15613091--15617358 Score: 5779
Period size: 877 Copynumber: 4.9 Consensus size: 875
15613081 CCTAGTCTAA
* * * * *
15613091 GCATATGGAGATCATTCCCAATCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * *
15613156 CTCGGGCATGTACTGGTGCCGCATTTTTCTTCACC-GGGCACCAT--TGCCAGAGCATCACCAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATG---GAGCATCGCCGGA
* * * *
15613218 GAACTTGACCGGAGGCATTGGGGTTCCGACAATCAGGGGGG-CTGGGGGGTGTGCGCACATGATG
128 GAACATGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATG
* *
15613282 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
15613347 A-AACCCATTGAAAGAACATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 ACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
15613411 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
15613476 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGCCCAAAACTCCTTCCGAA
386 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * *
15613541 AAAATTTTAAAAAATCAT-GAACCGCAAAAAGTTTGGAAAATTATGAAAAATTGAAAACGAGTCG
451 AAAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
15613605 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * ** *
15613670 GGCATCGGCATGTAGAAATATGAAGATGTGCCTAAACTGACCTACCACCCTATCGATCCACGGCA
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
15613735 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCACCCGTCTACTCGTTTCGCCGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGT
** *
15613800 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTGGCGGTC-GCA
710 TGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGG-CAGCA
* *
15613864 GGATCGGTAGCACGCAGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCTCGCCCCTCTGGCCG
773 GGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
*
15613929 GCTGAGCGCCTGCACACTCATTTCATGGGTTGACTTAG
838 GCTGAGCGCCTGCACACTCGTTTCATGGGTTGACTTAG
** * ** *
15613967 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * ** **
15614032 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-ATGGAGCATCGCCGGAGA
** * * *
15614097 ACATGACCGGCGGCATTGGGGTTCTAATGATCGGGGGGCCGAGGGGGGTGTGCACACAAGATGTG
130 ACATGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-AGGGGGGTGTGCGCACATGATGTG
*
15614162 CGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * *
15614227 ACCCCCACAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15614292 GGGGACACTTTTTTCAAATCGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * *
15614357 TGCATCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGAGCCAAAACTCCTT-CGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* *
15614421 AATTTAAAAAAATC-CTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
15614485 TTGGCATGAAACTTCACGCGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15614549 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACATG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15614614 CGCATCCCGTCTCTCTGGCC-AGCGCAGTGCCCGCCCACCCGCCCACCCGCTCGTTTCGTCAGTT
647 CGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTT
**
15614678 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGCCA-CAG
711 GGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGG-CAGCAG
* * * * *
15614742 GATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGA
774 GATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
*
15614807 CTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAG
839 CTGAGCGCCTGCACACTCGTTTCATGGGTTGACTTAG
15614844 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CAGACC----
* *
15614909 TGAGGGTTGCAGTAGCACATGCTGGGCTCGA-CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
41 -GAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * *
15614973 CACCATCGTCGGAGCATCGCCGGAGAACATGACAGGCGACATTGGGGTTCTGACGATCGGGGGGG
105 CACCATCAT-GGAGCATCGCCGGAGAACATGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* * * *
15615038 CCGATGGGGGTGTGCGCATATGATGGGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCT
168 CC-AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
15615103 ATGCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
15615168 ACCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15615233 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATCCCAACAAAAATACGAA-GATCACGTCTACCAA
362 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAC-AAGGATCACGTCTACCAA
* * *
15615297 GTTTCGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
426 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* * *
15615362 TCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAGGGACCATTG
491 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
15615427 TATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
15615492 CAACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTC
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
**
15615557 CGTTCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
686 CGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCAGA
** * * * * * * * *
15615618 CTGGACTGAGGGTTGTGGCGGCAAGATTGCTCGCACGTAGAGGGGGACCCGGCCGATCCCCGGCT
750 CTGGACCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACT
* * * * * * *
15615683 TACGCATCCCGCCCTTCTGGCCGGCTGAGCGCCTACACGCTTGTTTCGTGGGTTAACTTAG
815 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACACTCGTTTCATGGGTTGACTTAG
*
15615744 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* ** * * *** * *
15615809 CTTGAGCACATGTTGGTGCCGTATTTTTTCTTTGTCGGGGCACCATCATCGAAGCATCGTCGGAG
66 CTCGAGCATGTGCTGGTGCCGCA-TTTTTCTTCACCGGGGCACCATCAT-GGAGCATCGCCGGAG
* * **
15615874 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGCACGCACATGATGT
129 AACATGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGT
* * *
15615939 GCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCACATCAAAGCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15616004 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15616069 TGGGGACACTTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGCA-TTTTTAGCTGAATTTTT
323 TGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTT
* *
15616133 TTATGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
386 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** ** * *
15616198 AAAATTTCAAAAAATCTCGAACTTTAAAAAGTTTCAAAAATTGTGAAATATAGAAAACGAGTCGA
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
15616263 CTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAGAAAAT
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAAT
* * *
15616328 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGACT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15616393 TCCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTCATCGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGT
* * * * *
15616458 TGGCTTAGGCATAC-AGTTCATTCCCAGTCTAAGATCAGTCTAGACCGAGGGTTGCAGTAGCAGG
710 TGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGCAGG
* * * ** * * * *
15616522 ATCGGTAGCACACAGTGGGGGACACGGTTGATTCCCGGCTTGCGCATCCCGCCCCTCTAGCTGGC
775 ATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15616587 TGAGCGCCCGCACGCTCGTTTCATTGGTTGACTAAG
840 TGAGCGCCTGCACACTCGTTTCATGGGTTGACTTAG
*
15616623 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
15616688 CTCGAGCA-GTGCTGGTGTCGCATTTTTTTTCATCGGGACATCATCATGGAGCATCGCCGGAGAA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATGGAGCATCGCCGGAGAA
* *
15616752 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
131 CATGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCG
*
15616816 ATGGGTGCTGGTACTTGGCCTTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15616880 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
15616945 GGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTCTAGCTG-ATTTTTTTATG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* *
15617009 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAGT
391 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
15617074 TTTAAAAAATCTCGAACTGTAAATAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCCTGC
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
15617139 CATGAAACTTCACGTGAAGGCTT-AGAGGACCATTGTAGGAATTTACAA-CCATAAAAATGGCAT
521 CATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15617202 TGGCAGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
15617267 ATCCCATCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCG----CTCGTTTCGTAGGTTGGTT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCT
15617328 TAGGCATACGGAGTTCATTCCCAGTCTAAGA
715 TAGGCATAC-GAGTTCATTCCCAGTCTAAGA
15617359 CCGGACCATC
Statistics
Matches: 3026, Mismatches: 305, Indels: 131
0.87 0.09 0.04
Matches are distributed among these distances:
865 25 0.01
867 20 0.01
869 108 0.04
870 7 0.00
871 171 0.06
872 41 0.01
873 101 0.03
874 78 0.03
875 171 0.06
876 428 0.14
877 503 0.17
878 345 0.11
879 203 0.07
880 1 0.00
881 28 0.01
885 1 0.00
887 1 0.00
890 1 0.00
892 1 0.00
896 2 0.00
898 5 0.00
899 4 0.00
900 182 0.06
902 79 0.03
903 384 0.13
904 136 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATGGAGCATCGCCGGAGAA
CATGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
AGGCATACGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGCAGGATCGGT
AGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCTGCACACTCGTTTCATGGGTTGACTTAG
Found at i:15618059 original size:714 final size:707
Alignment explanation
Indices: 15616599--15618092 Score: 2214
Period size: 714 Copynumber: 2.1 Consensus size: 707
15616589 AGCGCCCGCA
* * * * *
15616599 CGCTCGTTTCATTGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
1 CGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
** * * *
15616664 AGGGTTGCGGTTGCACATGCTGGGCTCGAGCAGTGCTGGTGTCGCATTTTTTTTCATCGGGACAT
66 AGGGTTGCGGCAGCACATGCTGGCCTCGAGCAGTGCTGGTGTCGCATTTTTCTTCATCGGGACAC
*
15616729 CATCATGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGG
131 CATCA-GGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGG
* * * *
15616794 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTATCCCTCA
195 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTAGCCTCTAAATTGGCCCCTATCCCTCA
* **
15616859 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTAACAGTAG
*
15616924 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGT
325 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
15616989 TTCTAGCTGATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCC
390 TTCTAGCTGATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCC
* * * * * *
15617054 AAAACTCCTTCCGAAAAAGTTTTAAAAAATCTCGAACTGTAAATAGTTTTAAAAATCATGAAAAA
455 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
15617119 TAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAGAGGACCATTGTAGGAATTTA
520 TAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAGAGGACCATTGTAGGAATTTA
* * * *
15617184 CAACCATAAAAATGGCATTGGCAGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
585 CAACCATAAAAACGGCATTGGCAGGAAGAAATATGAAGATGTACCCAAACACACCTACCACCCTA
*
15617249 TCGATCCACGGCTGGCGCATCCCATCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCC
650 TCGATCCACGGCTGGCGCATCCCATCTCTCTGGCCGACATAGTGCCCGCCCGCCCACC
* * *
15617307 CGCTCGTTTCGTAGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGACCA-TCCT
1 CGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC-
*
15617371 GAGGGTTGCGGCAGCACATGCTGGCCTCTG-GCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGG
65 GAGGGTTGCGGCAGCACATGCTGGCCTC-GAGCA-GTGCTGGTGTCGCATTTTTCTTCATCG-GG
* *
15617435 -CACCATTGCCA-GAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGG
127 ACACCA-T--CAGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGG
*
15617498 GGCCGGGGGGGTGTGCACCCATGATGTGCGATGGGTGCTGGTACTTAGCC-CTAAATTGGCCCCC
188 GGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTAGCCTCTAAATTGG-CCCC
15617562 TATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGC
251 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGC
* *
15617626 TAACAGTAGCCATTAACGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
316 TAACAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
15617691 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
381 ACTTCGAGTTTCTAGCTG-ATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
15617756 GTTTTGGTG-CAAGAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
445 -ATTTGGGGCCAA-AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * * *
15617820 AATCATGAAAAATAAAAAATGTGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTA-AGGGACCA
508 AATCATGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAGA-GGACCA
* ** *
15617884 TTGTATGAATTTACAAGCCATAAAAACGGCATTGGCTTGCAGAAATATGAAGATGTACCCAAACA
572 TTGTAGGAATTTACAA-CCATAAAAACGGCATTGGCAGGAAGAAATATGAAGATGTACCCAAACA
* * * *
15617949 CACCTACCACCCTATCGATCCACGGCTTGCTCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
636 CACCTACCACCCTATCGATCCACGGCTGGCGCATCCCATCTCTCTGGCCGACATAGTGCCCGCCC
15618014 GCCCACC
701 GCCCACC
* * *
15618021 CGCTCGTTTCGTCA-GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACC
1 CGCTCGTTTCGT-AGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
*
15618085 CAGGGTTG
65 GAGGGTTG
15618093 TGATAGCAGG
Statistics
Matches: 704, Mismatches: 65, Indels: 28
0.88 0.08 0.04
Matches are distributed among these distances:
707 2 0.00
708 81 0.12
709 30 0.04
710 47 0.07
711 126 0.18
712 124 0.18
713 123 0.17
714 168 0.24
715 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (707 bp):
CGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AGGGTTGCGGCAGCACATGCTGGCCTCGAGCAGTGCTGGTGTCGCATTTTTCTTCATCGGGACAC
CATCAGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTAGCCTCTAAATTGGCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTAACAGTAGC
AATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TCTAGCTGATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCA
AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
AAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAGAGGACCATTGTAGGAATTTAC
AACCATAAAAACGGCATTGGCAGGAAGAAATATGAAGATGTACCCAAACACACCTACCACCCTAT
CGATCCACGGCTGGCGCATCCCATCTCTCTGGCCGACATAGTGCCCGCCCGCCCACC
Found at i:15618240 original size:26 final size:26
Alignment explanation
Indices: 15618204--15618256 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15618194 TTTGACTTAG
15618204 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15618230 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15618256 G
1 G
15618257 ATCGGATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15618436 original size:26 final size:26
Alignment explanation
Indices: 15618384--15618436 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15618374 GTTGACTTAG
* * *
15618384 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATATAA
*
15618410 GCATACGAAGTTCGTTCCCAATATAA
1 GCATACGAAGTTCATTCCCAATATAA
15618436 G
1 G
15618437 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATATAA
Found at i:15619324 original size:26 final size:26
Alignment explanation
Indices: 15619288--15619340 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15619278 GTTGACTTAG
15619288 GCATACGGACTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
*
15619314 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
15619340 G
1 G
15619341 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:15619845 original size:26 final size:26
Alignment explanation
Indices: 15619816--15619868 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15619806 TACTTAGCCC
* *
15619816 GCATATGGAAATCATTCCTAGTCTAA
1 GCATACGGAAATCATTCCCAGTCTAA
**
15619842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAAATCATTCCCAGTCTAA
15619868 G
1 G
15619869 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAAATCATTCCCAGTCTAA
Found at i:15620729 original size:26 final size:26
Alignment explanation
Indices: 15620699--15620757 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
15620689 GTTGACTTTG
15620699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15620725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15620751 -CAT-CGGA
1 GCATACGGA
15620758 TCGAATCGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 26 0.79
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15621633 original size:26 final size:26
Alignment explanation
Indices: 15621604--15621656 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15621594 GTTGACTTAG
15621604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15621630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15621656 G
1 G
15621657 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15622021 original size:904 final size:897
Alignment explanation
Indices: 15619827--15622605 Score: 3804
Period size: 900 Copynumber: 3.1 Consensus size: 897
15619817 CATATGGAAA
* * * *
15619827 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCA
* * *
15619892 GCAGCACA-TCTGGGCTCAGGCATGTGCTGGTG-CTGCA--TTT-TTC--T---------TCGTC
66 GCAGCACACGCTGGGCTCGGGCATGTGCTAGTGTC-GCATTTTTCTTCGTTGGGGCACCATCGTC
*
15619941 GGAGCATCGCCGGAGAACCTGACCGACGGTATT-AGGGTTTCGGCGATC--GGGGTTGCCGGGG-
130 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGA-GG-TTCGGCGATCGGGGGGTTG--GGGGC
15620002 GGTGTGCGCA-ACTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
191 GGTGTGCGCACA-TGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
15620066 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTA
254 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
15620131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAG
319 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
15620196 ATTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAGTACAACGATCACATCTACCAAGTTTGGGG
384 TTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** * *
15620261 CCAAAACTCCTTCTAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAA
449 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* *
15620326 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATT
514 AATAGAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * **
15620391 TACAAGCCAAAAAAATGGCATTGGGACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACC
578 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACC
* * *
15620456 ATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCACACCCGCT
643 CTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGC-CGCCCGCT
* * * * *
15620517 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATCAAACTGGACCG
707 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-
* * * * *
15620582 AGGGTTGCGATAGTAGGATCGGCAGCATGCAGAGGGGGACCCAATTGATCCCCAGCTTGCGCA-C
771 AGGGTTGCGATAGCAGGATCGGCAGCACGCAGA-GGGGACCCAGTCGATCCCCGGCTTGCGCATC
* * * ** * * *
15620646 CCACCCTTTTGGCCGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTTGGCATACGGAGT
835 CCGCCCCTCT-GCCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * *
15620710 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCGGATCGAATC-GAAGGTTGC
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CAGAGGGTTGC
* * * **
15620774 AGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGGCACCATCCCC
65 AGCAGCACACGCTGGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTC
* * * * *
15620839 GGAGCATCACCGGAGAACCTGACCGTCGGCATTGGGGCTTCGGCGATCGGGGGGGTCGGAGGCGG
130 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGAGG-TTCGGCGATC-GGGGGGTTGGGGGCGG
* * *
15620904 TGTGTGCACATGATGTGCGGTGGTTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
193 TGTGCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
15620969 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
257 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
15621034 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
322 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
15621099 TTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
387 TTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
15621164 AATCTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAGAGTTTCAAAAAT-AGTGAAAAA
452 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAA
15621228 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
516 TAGAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
15621293 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
580 CAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCT
* *
15621358 ATCGATCCACAGCTTGCGCATTCCGTCTCTCTGACCGGCGTAGTGCTCGCCCGTCCGCCCGCTCG
645 ATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCG-CCGCCCGCTCG
* *
15621423 CTCATTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCATG
709 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCA-G
* * * * * * **
15621488 GGTTGTGGTAGCAGGGTCAGCACCACGCGGAGGGGAACCTGGTCGATCCCCGGCTTGCGCATCCC
773 GGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGG-ACCCAGTCGATCCCCGGCTTGCGCATCCC
* * *
15621553 GCCCCTCTGCCCCACTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGT
837 GCCCCTCTG-CCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* *
15621615 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCA
* * *
15621680 GCAGCAGACGATAGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCG
66 GCAGCACACGCTGGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCG
* * ** *
15621745 GAGCATCGCCGGAGAACTTGACTGACGGCATTGAGGTTCCCACGATCGGGGGGTTGGGGGCGGTA
131 GAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTT-CGGCGATCGGGGGGTTGGGGGCGGTG
* *
15621810 AGCGCACATGATGTGCGATGGGTGCTGCTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
195 TGCGCACATGATGTGCGATGGGTGCTG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
15621875 ACCTTGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
259 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
15621940 TAAAGTGTCTGAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTT
324 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
15622005 AGTTGAATTGTTTTGTGCATGCC-AACAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAA
389 AGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
15622069 ACTCCTTCCGAAAAAATTTTAAAAAGTCCCGAAGCGTAAAAAGTTTCAAAAATCATGAAAAATAG
454 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
*
15622134 AAAAGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
519 AAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
15622199 CCATAAAAATGGCATTGGCACAGAGAAACATAAAGATGTGCCTAAACCCACCTCCCACCCTATCG
584 CCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
15622264 ATCCA-TGACTTACGCATCCCGAT-TCTCTGGCCGACGTAGTGCACGTCCGCCCGTCCG-TCCGC
649 ATCCACAG-CTTGCGCATCCCG-TCTCTCTGGCCGGCGTAGTGCTCGCCCG-CCGCCCGCT-CGC
* * * * *
15622326 TCATTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGG
710 TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCAGG
* * *
15622391 GTTGCGACAGCAGGATCGGCAGCACGTAGAGAGGGACCCAGTCGATCCCCGACTTGCGCATCCCG
774 GTTGCGATAGCAGGATCGGCAGCACGCAGAG-GGGACCCAGTCGATCCCCGGCTTGCGCATCCCG
** * * *
15622456 TACCTCTAGCCAACTGAGCACCCGCACGCTCGTTTCATGGTTTGACTTAGGCGTACGGAGT
838 CCCCTCT-GCCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * *
15622517 TAATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCGGATTGGACAGTGGGTTGCA
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCA
* *
15622582 GCAGCAAATGCTGGGCTCGGGCAT
66 GCAGCACACGCTGGGCTCGGGCAT
15622606 TGGGGTTCCA
Statistics
Matches: 1670, Mismatches: 183, Indels: 67
0.87 0.10 0.03
Matches are distributed among these distances:
883 63 0.04
884 24 0.01
885 1 0.00
886 3 0.00
887 3 0.00
898 45 0.03
899 4 0.00
900 460 0.28
901 9 0.01
902 403 0.24
903 115 0.07
904 334 0.20
905 206 0.12
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCA
GCAGCACACGCTGGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCG
GAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCGGCGATCGGGGGGTTGGGGGCGGTGT
GCGCACATGATGTGCGATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
AAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCCGCTCGCTCATTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAGGGTTGCGA
TAGCAGGATCGGCAGCACGCAGAGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
CCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
Found at i:15622549 original size:26 final size:26
Alignment explanation
Indices: 15622509--15622558 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15622499 GACTTAGGCG
15622509 TACGGAGTTAATTCCCAGTCTAAGCA
1 TACGGAGTTAATTCCCAGTCTAAGCA
**
15622535 TACGGAGTTCGTTCCCAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
15622559 ATCGGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCA
Found at i:15623269 original size:26 final size:26
Alignment explanation
Indices: 15623218--15623270 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15623208 GTTCACTTAG
* * *
15623218 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATTCACAGACTAA
*
15623244 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCACAGACTAA
15623270 G
1 G
15623271 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGACTAA
Found at i:15625516 original size:26 final size:26
Alignment explanation
Indices: 15625486--15625538 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15625476 GTTGACTTAG
*
15625486 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15625512 GCATACAGATTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15625538 G
1 G
15625539 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15626990 original size:26 final size:26
Alignment explanation
Indices: 15626961--15627011 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15626951 TTGACTTAGG
*
15626961 CATACGGAGTTCATTGCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
15626987 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15627012 GATTGAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:15628716 original size:903 final size:900
Alignment explanation
Indices: 15626874--15631239 Score: 6023
Period size: 903 Copynumber: 4.8 Consensus size: 900
15626864 TAGCACGTAG
* * * * * *
15626874 AGGGGGACCCGGTCAATCCCTGGCTTGAGCATCCCACCCCTCTGGCCGGTTGAGCGCCCACACGC
1 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
15626939 TCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAACATATGGAGTTCATTCC
66 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCATATGGAGTTCATTCC
* * * * *
15627004 CAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG
130 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTG
* * * * * *
15627069 CCGGATTTTTCTTTGTCGGGGCACCATCGTCGCAGCATCGTCGGAGAACCTGACCGACGGTATTG
194 CCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* * * * * * * *
15627134 GGGTTCCGGCGATTGAGGGGGCCGGAGGAGTGTGTGCACATGGTGTGCGATGGGTGCTGGAACTT
259 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
15627199 GGCCCTAATATTGGCCCACTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
324 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
15627264 TGATATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
389 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
15627329 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-ATGCATGCCAAGAAAAAT
454 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA-GCATGCCAACAAAAAT
* * * *
15627393 ACAAGGATCACGTATACCAAGTTTAGGG-CAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTG
518 ACAAGGATCACATCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCCG
*
15627457 AAC-CCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
582 AACAGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* **
15627521 GTGAAGGCTTAAGAGACCATTGTATGAATTTGGAAGCCATAAAAATGGCATTGGCATGCAGAAAT
646 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
15627586 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTTTCTCTG
711 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTG
** *
15627651 GCCGGCGTAGTGCTCGCCCGCCCGCCCGCACGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
776 GCCGGCGTAGTGCTCGCCCGCCCGCCCGC-CGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGT
* * *
15627716 TCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGTAGCAGGATCGACAACACGTAA
840 TCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTAGCAGCAGGATCGACAACA-GCAA
* * *
15627778 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTATGC
1 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
15627843 TCATTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCGAGTCTAAGCATATGGAGTTTATTCC
66 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC-AGTCTAAGCATATGGAGTTCATTCC
* * * *
15627908 CAGTGTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGTTCGGACATGTGCTGGTG
130 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTG
* * *** * ** *
15627973 CTGCATTTTTTTTTACCGGGGCACCATCATCAGAGCATCGCCGGAGAACCTGACCGGTGGGATTG
194 CCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* *
15628038 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTTCGCATATGATGTGCGATGGGTGCTGGTACTT
259 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
15628103 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
324 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
15628168 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAA
389 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
15628233 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-ATTTTTGAGCATGCCAACAAAAATA
454 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATA
*
15628297 CAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAA
519 CAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAA
** * * *
15628362 CAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATA
584 CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
15628427 AAGGCTTAAGGGACCATTGTATGAATTTAGACA-CCATAAAAATGGCATTGGCATACAGAAATAT
649 AAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCATGCAGAAATAT
* *
15628491 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGC
713 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGC
** * ** * *
15628556 CGGCGTAGTGCTCGCCCGCGGGCCTGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTC
778 CGGCGTAGTGCTCGCCCGCCCGCCCGC-CGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTC
* * *
15628621 ATTCCCATTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAAGATC-AGCAACATGCAA
842 ATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTAGCAGCAGGATCGA-CAACA-GCAA
* * *
15628681 AGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTATGC
1 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
15628746 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATT-C
66 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC-AGTCTAAGCATATGGAGTTCATTCC
* * ** * * *
15628810 CAGTCTAAAATCAGATGGGACCGAGGGTTGCGGCCGCACATGCTGGGCTGGGGCATGTGCTGGTG
130 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT-CGGCATGTGCTGGTG
* * * * *
15628875 CCGCATTTTTATTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGATCGACGGCATTA
194 CCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
** * * * * *
15628940 GGGTTCCGGTGATCGGGGCGGCAGGGGGTGGTGTGCGCACGTGATGTGTGATGGGTACTGGTACT
259 GGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
15629005 TTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACAT
323 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
15629070 TTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
388 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
15629135 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAAT
453 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAAT
* * * * *
15629200 ACAAGGATCATATCTACCAAGTTTCGGGCCAAATATCCATCTGAAAAAATTTTAAAAAATCCCGA
518 ACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGA
** * *
15629265 ATTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGT
583 ACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
** * *
15629330 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGTTATTGGCACGCAGACATAT
648 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * * * *
15629394 GAAGATGCGTCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
713 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGC
* * *
15629459 CGGCGTAGTGCCCGTCAGCCCGCCCGCCCGCCTGCCCACCCGCTCGTTTCATAATTTGGCTTAGA
778 CGGCGTAGTG--C-TC-GCCCGCCCG--C-CC-G-----CCGCTCGTTTCATCAGTTGGCTTAGG
* ** * * * *
15629524 CATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTGTAGCAGCAGGATCGATAG
830 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTAGCAGCAGGATCGACAA
*
15629589 CAGGCAG
895 CA-GCAA
* * * *
15629596 ATGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAGCGCCCGCACGC
1 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
15629661 TCTTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTTC
66 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCATATGGAGTTCATTCC
* * * * * * *
15629726 TAGTCTACGATTGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGATATGCTGGTGC
130 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGC
* * * * **
15629791 CGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAAAACCTAACCGTTGGCATTGG
195 CGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
* *
15629856 GGTTCCGACGATCGGGGGGCCCTGGGGGGGATGTGCGCACATGATGTGTGATGGGTGCTGGTACT
260 GGTTCCGACGATCGGGGGGGCC-GGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
15629921 TGGACCTTATATTGG-CACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
323 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
15629985 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACTGAGGACACTTTATTCAA
388 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
15630050 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTATGCATGCCAACAAACA
453 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA-GCATGCCAACAAAAA
* *
15630115 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAAATTTAGAAAAATCCT
517 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA-AAAAATCCC
* * * *
15630179 GAACCA-TAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCGATGAAACTTCA
581 GAA-CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* ** *
15630243 CGTGAAGCCTTAAGGGAAAATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
645 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
15630308 TATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCT
710 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCT
* * * * ** *
15630373 GGCCGGAGTAGTGCCCACCTGCCTACCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATACAGAG
775 GGCCGGCGTAGTGCTCGCCCGCCCGCCCGCC-GCTCGTTTCATCAGTTGGCTTAGGCATACGGAG
* ** *
15630438 TTCATTCCTAGTCTAAGATTGGA-CTG-CTCTGAGGGTTGT-GACAGCAGGATCGACAACA-CAT
839 TTCATTCCCAGTCTAAGATCAGATCAGAC-C-GAGGGTTGTAG-CAGCAGGATCGACAACAGCA-
15630499 A
900 A
* *
15630500 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
1 -AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
15630565 TTCGTTTCGTGGGTTGACTTAGGCGTAC-GAAGTTCATTCCAGTCTAAACATATGGAGTTCATTC
65 CTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCAGTCTAAGCATATGGAGTTCATTC
* * * *
15630629 GCAGTCTAAGATCGGACCGGACCGAGGCTTACGACAGCACGTGCTGGGCTCGGGCATGTGCTGGT
129 CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC-GGCATGTGCTGGT
* * * *
15630694 GCTGCATTTTTCTTC-ACTGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGGAT
193 GCCGCATTTTTCTTCGTC-GGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
* * *
15630758 TGGGGTTCCAACGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGATGGTA
257 TGGGGTTCCGACGATCGGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
15630823 CTTGGCCCTTATATTGGCCTCCTATCCCTCGTCAAACCTCTAGAACTCACACCCCCTTAAAGAGC
321 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
15630888 ATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
386 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
15630953 AAATGGTCACAAAATCTTGTACACTTCAAGATTTTAGCTTAATTTTTTTGTGCATGCCAACAAAA
451 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAA
* * * * * *
15631018 AAACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAGAAAATCTC
516 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCC
* *
15631082 GAACTGCAAAAAGTTTCAAAAATCATGAAAAATCGAAAACGAGTCGTCTTGCCATGAAACTTCAC
581 GAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
15631147 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
646 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
15631212 ATGAAGATGTGCCTAAACCCACCTACCA
711 ATGAAGATGTGCCTAAACCCACCTACCA
15631240 TTCCCAATAT
Statistics
Matches: 3067, Mismatches: 349, Indels: 93
0.87 0.10 0.03
Matches are distributed among these distances:
902 132 0.04
903 947 0.31
904 781 0.25
905 409 0.13
906 3 0.00
907 7 0.00
909 2 0.00
910 3 0.00
911 2 0.00
913 5 0.00
914 1 0.00
915 440 0.14
916 246 0.08
917 89 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (900 bp):
AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGCATATGGAGTTCATTCCC
AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACA
AGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACA
GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCTCGCCCGCCCGCCCGCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGATCAGACCGAGGGTTGTAGCAGCAGGATCGACAACAGCAA
Found at i:15628803 original size:26 final size:25
Alignment explanation
Indices: 15628767--15628817 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
15628757 GTTGACTTAG
15628767 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
*
15628793 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15628818 AATCAGATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:15632133 original size:26 final size:26
Alignment explanation
Indices: 15632097--15632146 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15632087 GACTTAGGCA
15632097 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
15632123 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15632147 ATCGGACCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:15633028 original size:26 final size:26
Alignment explanation
Indices: 15632992--15633044 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15632982 GTTGACTTAG
*
15632992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15633018 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15633044 G
1 G
15633045 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:15633528 original size:899 final size:895
Alignment explanation
Indices: 15631238--15637510 Score: 7162
Period size: 895 Copynumber: 7.0 Consensus size: 895
15631228 ACCCACCTAC
* * * * * * * * *
15631238 CATTCCCAATATAAGATCGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGACATGTG
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACAAGCTGGGCTCGGGCATGTG
** * ** * * ** ** * *
15631303 CTGGTGCTACATTTTTTTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGGCG
66 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACAAAGAACCTGACCGACG
* * * *
15631368 GGATTGAGGTTCCGACGATCGGGGGGGCCGAGAGGGGTGTTCGCACATGATGTGCGATGGGTGCT
131 GCATTGGGGTTCCGGCGATC-GGGGGGCCG-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
15631433 GGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
193 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
15631498 GAGCATTTGATATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTT
* * *
15631563 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGGTGCATGGCAAC
322 TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
15631628 AAAAATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAA-TGCCTTCCGAAAAAATTTAAAAAA
387 AAAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAA
* ** * *** * * *
15631692 ATCTCGAATTGTAAAAAGTTAGGAAAATCATGAGAAATATAAAACGAGTCATCTTACCATGAAAC
450 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA-AAATACAAAACGAGTCATCTTGCCATGAAAC
* * * *
15631757 TTCA--T----G-TGAA-GG--C-TTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCA
514 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* *
15631811 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC-CTATC
579 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC-GTC
** * *
15631875 TCTCTGGCCGAG-GTAGTGCCCACCCGCCCGTTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
643 TCTCTGGCCG-GCGTAGTGCCTGCCCTCCCG--C-CC-GCTCGTTTCGTCGATTGGCTTAGGCAT
* * *
15631939 ACGGAGTTCATTCCCAGTCTAAGAT-TGCACC-GCATCGAGGGTTGTGGTAGTAGGATCGGCAGC
703 ACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCGAGGGTTGCGGTAGTAGGATCGGCAGC
** * * * * *
15632002 A-TGTAGAGGGGAACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGC-AC
766 ACACT-GAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGTC
*
15632065 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAG
830 -CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
15632130 TT
894 TT
* * * *
15632132 CATTCCCAGTCTAAGATCGGACCACACCGAGGGTTACGGCAGCGCAAGCTGGGC-CTGGGCATGT
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACAAGCTGGGCTC-GGGCATGT
* * **
15632196 GCTGGTGCCGCATTATTCTTCGTCGGGGCACCATC-ATCGGAGCATCGTCGGAAA-AACCTGACC
65 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCAAC--AAAGAACCTGACC
* *
15632259 -AGCGGCATTGGGGTTCCGGCGATCGGGAGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTG
127 GA-CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
15632323 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
191 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
15632388 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGAACAAT
256 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACT
*
15632453 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTGTGTGCATGCCA
320 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
15632518 ACAAAAAAACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTACAAA
385 ACAAAAATACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* *
15632583 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA-ATCGAAAACGAGTCGTCTTGCCATGAAA
450 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAATA-C-AAAACGAGTCATCTTGCCATGAAA
*
15632647 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGT
513 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * *
15632712 AAAAATTTGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
578 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
* * * *
15632777 TCTCTGGTCGGTGTAGTGCCTGCCCTCCCGTCCGCTCGTTTCATCGATTGGCTTAGGCATACGGA
643 TCTCTGGCCGGCGTAGTGCCTGCCCTCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
* * * * * **
15632842 GTTCATTCCCAGTCTAAGATCGGATCAAACCAAGGGTTACGGTAGTAGGATCGATAGCACACTGA
708 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACACTGA
* ** * * *
15632907 GGGGGACCCGGTCGATCCCCAACTTACGGATCCCACCCCTCTGGCTGGCTGAGCGTCCGTC-CGC
773 GGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCG-CACGC
*
15632971 TCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
837 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
15633030 CATTCCCAGCCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCACAAGCTGGGCTCGGGCATGTG
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACAAGCTGGGCTCGGGCATGTG
* * * ** * *
15633095 CTGGTGTCGTATTTTTCTTCGTCAGGGTGCCATCGCTAGAGCATCAACAAAGAACCTAACCGACG
66 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACAAAGAACCTGACCGACG
* ** *
15633160 ACATTGGGGTTTTGGCGATCAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGAGTGCTG
131 GCATTGGGGTTCCGGCGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
15633225 GTACTTGGCCCTTATATTAGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
15633290 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAATGTCTAAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTT
* **
15633355 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTGTGCACACCAACA
323 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
15633420 AAAATAGAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
388 AAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* *
15633485 CCCGAACCCCAAAAAGTTTTAAAAATCGTGAAAATACAAAACGAGTCATCTTGCCATGAAACTTC
452 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAATACAAAACGAGTCATCTTGCCATGAAACTTC
* *
15633550 ACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAA
517 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
* *
15633615 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGTGCATCTCGTCTCTC
582 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTC
* * * * * * *
15633680 TGGACGGTGTA--G--TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCATAGGCATACGGAGTTT
647 TGGCCGGCGTAGTGCCTGCCCTCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
* * * * * * * * * *
15633741 GTTCCCAGTCTAAGATTAGACTAGACCGAGGGTTACGGTCGTAGGATCAGTACCACGCAGAGGGG
712 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACACTGAGGGG
* * * * * *
15633806 GACCCGGCCGATCCCTGGTTTACGCATTCTGCCCCTCTGGCCGGCTGAGC-ACGCACACGCTCGT
777 GACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGTC-CGCACGCTCGT
* * * * * *
15633870 TTTGTGGGTTAACTTAGGCTTATGGAGTTCATTCGCAGTCTAAGCATACGAAGTT
841 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
15633925 CATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGGTAGCA-AATGCTGGGCTCGGGCATGT
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACAA-GCTGGGCTCGGGCATGT
* * * *
15633989 GCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCAACAAAGAACTTGACCGAC
65 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACAAAGAACCTGACCGAC
* * * * *
15634054 GGCACTGAGGTTCTGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGTTGCTG
130 GGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
15634119 GTACTTAGCCCTTATATTAGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
15634184 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATAAAAGTGTCTGAATGTGGACAATTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTTTT
**
15634249 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
324 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
15634314 AAATACAAGAATCACGTTTACCAAGTTGGGGCCAAAACTCCTTCCAAAAAGATTTTACAAAATCT
389 AAATACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
15634379 CGAACCGCAAAAAGTTTCAAAAATGGTGAAAA-ATCGAAAACGAATCGTCTTGCCATGAAACTTC
454 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAATA-C-AAAACGAGTCATCTTGCCATGAAACTTC
*
15634443 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
517 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
* *
15634508 ATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACAGCTTGCGCATC-CAGTCTCT
582 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC-GTCTCT
* *
15634572 CTGGCCGGCGTAGTGCCTGCCCTCCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATATGGAGTT
646 CTGGCCGGCGTAGTGCCTGCCCTCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTT
* * * * * * * *
15634637 CATTACCAGTCTAACATTAGACCAGACTGAGGGTTGCGGTAGCAAGATCGACAGCACACTGAAGG
711 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACACTGAGGG
* * * * * * * * *
15634702 GGACCCGACCGATCCCCAGCTTGCGGATCCCACCCTTCTGGCCTGCTGAGCGTCCGCCCGCTCAT
776 GGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGT
15634767 TTCGTGGGTTGACTTAGGCATACGGAGTT-ATTGCCCAGTCTAAAGCATACGGAGTT
841 TTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCT-AAGCATACGGAGTT
* *
15634823 CATGCCCAGTCTAAGATC-GACCAGACCGA-GG-TGCGGTTAGCACATGCTGGGCTC-GGCATGT
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-TAGCACAAGCTGGGCTCGGGCATGT
* *
15634884 GCT-GTGCCGC-TTTTTCTT-GTC-GAGCACCATCG-TCGGAGCATCAACAAAG--CCTGACCGG
65 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCAACAAAGAACCTGACCGA
* ** * *
15634942 CTGCATT-AAG-TCTAGGACGA-CGGTGGGCC-GGGGGTGTTGC-CAACATGATGTGCGA-GGGT
129 CGGCATTGGGGTTC-CGG-CGATCGGGGGGCCGGGGGGTG-TGCGC-ACATGATGTGCGATGGGT
* * * * *
15635001 GC-GCGGAC-TGGCCC-TATATTAGCCCCTTAGT-CGTCATCAAAACTCGAGAGACTCACA----
190 GCTG-GTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGA-ACTCACACCCC
* * * *
15635058 C-T----CG-A-TTGA-ATTTT--TGG-TT--TGCCAGTAG-CATTAAAATTTCT--AT-GGGAC
252 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGAC
* * * * *
15635106 ACTTTTTGTGAATTATACAATGTCCCAAAATCTTGTACACTTCAAGTTTACT-GCAGAATTTTTT
317 ACTTTTT-TCAA--AT----GGTCACAAAATCTTGTACACTTCAAGTTT-TTAGCTGAATTTTTT
* * ** * *
15635170 TGTGCATG--AA-TAAAATAGAAGG-TCA-GT-T-CTGAGTT-TGGCCAAACCTCCTTCCCAAAA
374 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTT-CCAAAA
* *
15635227 AAATTTTTAAAAAATCCCGAACCCCAAAAGGTTTCAAAAATCGTGAAAAATACAAAACGAGTCAT
438 AAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG-AAAATACAAAACGAGTCAT
* *
15635292 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGGCATAAAAATG
501 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15635357 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
566 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
15635422 GTGCATCTCGTCTCTCTGGCTGGTGTAGTGCCCGCCAGCCCGCTCGCCCGCCCGCCCGCTCGTTT
631 GCGCATCTCGTCTCTCTGGCCGGCGTAGT--------G--C-CT-GCCCTCCCGCCCGCTCGTTT
* * * *
15635487 CATCGATTGGCATAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG
684 CGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * *
15635552 GTAGTAGGATCGGTA-C-CATTTAGAGGGGGACCCGGCCAATCCCCGGCTTACGCATCCCGGCCC
749 GTAGTAGGATCGGCAGCACA-CT-GAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCC
* ** * **
15635615 TCTGGCCGACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCGT
812 TCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
15635680 AGTCTAAGCATACGGAGTT
877 AGTCTAAGCATACGGAGTT
* * * ** * * *
15635699 CATTCCCAGTCTGAGATCGAACCACACCGAGGGTTGCGACAGCACATGCTGGGCT-GAAGAATGT
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACAAGCTGGGCTCG-GGCATGT
* ** ** *
15635763 GCTGGTGCCGCATTATTCTTCGTCGGGGCACCATCGAC-GGAGCATCGTCGGAGAACCTGACCGG
65 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCAACAAAGAACCTGACCGA
* * * *
15635827 CGGCATTGGGGTTCCGACGATC-GGGTGCCCGGGGGT-TGCGGCCCGATGATG-GCGATGGGTGC
129 CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGC-GCAC-ATGATGTGCGATGGGTGC
* *
15635889 TGGTACCTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTTGAGAACTCACACCCCCCT
192 TGGTA-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACA-CCCCCT
* *
15635954 TAAAGAGCATTTGAAGATTTTACAGGTTTGTTG-CAGTAGCCATTAAAGTGTCCTAAATGTGGA-
254 TAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTAAATGGGGAC
* * * *
15636017 AATATTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT-TGCATT
317 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA-T
* * * *
15636080 GCCAACAAAAATAGAAGGATCAACGTCTAGCAAGTTTGGGCCAAAAATACCTT-CAAAAAAATTT
381 GCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTGGGGCCAAAACT-CCTTCCAAAAAAATTT
** * * *
15636144 TAAACCATCCCGAACCAACAAAAAG-TTCAAAAATTCATGAAAAATAAAAAACGAGTCATCTTG-
444 TAAAAAATCCCGAACC-GCAAAAAGTTTCAAAAA-TCGTG-AAAATACAAAACGAGTCATCTTGC
* * * *
15636207 CATGAAATTTCACGTGAA-GCTTAA-GGACCATTGTAAAGAA-TTAAAAG-CATAAAAAAATGAC
506 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCAT--AAAAATGGC
* * *
15636268 ATTGGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
568 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
15636333 GCATCCCATCAT-TCTGGACAGCGTAGTGCCCGCCCGCCTGCCCACTCACTCGTTTCGTCTG-TT
633 GCATCTCGTC-TCTCTGGCCGGCGTAGTGCCTG--C-CCT-CCCGCCCGCTCGTTTCGTC-GATT
* * * * *
15636396 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGG
692 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGG
* **
15636461 ATCGGCAGCACGC-GAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGC
757 ATCGGCAGCACACTGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGC
** * *
15636525 TGAGCACCCGCACGTTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
822 TGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
15636590 TACGGAGTT
887 TACGGAGTT
* * * *
15636599 CATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGATAGCACATGCTGGGCTCGAGCATGTG
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACAAGCTGGGCTCGGGCATGTG
* * * * ** ** * *
15636664 TTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACATGACCGGCG
66 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACAAAGAACCTGACCGACG
* * * * * * *
15636729 GCATTGGGCTT-CGGTGATTGGGGGGTCGATGGGGTGTGCACACATGATGTGCGATGGGTGTTGG
131 GCATTGGGGTTCCGGCGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
15636793 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGA
195 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
15636858 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTT
260 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTTT
* * * * *
15636923 TCAAATGGTCACAAAATCTTGTACGC-TAAGAGTTTTTTGCTGAATTTTTTTATGCATGCGAACA
324 TCAAATGGTCACAAAATCTTGTACACTTCA-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
15636987 AAAACACAAGGATCATGTCTACCAA-----GGCCAAAACTCCTTCCGAAAAACTTTTAAAAAATC
388 AAAATACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* ** **
15637047 TCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGAGT-AGTCTTGCCATGAAACTT
453 CCGAACCGCAAAAAGTTTCAAAAATCGTG-AAAATACAAAACGAGTCA-TCTTGCCATGAAACTT
15637111 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
516 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* * *
15637176 AATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCATCTCT
581 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCT
* * * ** * *
15637241 CTGGCCAGCGTAGTGCCCGCCCGT-CCGCCTGCTTATTTCGTCGGTTGGCTTAGGCATACGAAGT
646 CTGGCCGGCGTAGTGCCTGCCC-TCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
* * * * * * * *
15637305 TCAATCCCAGTCTAAAATCCGATCGGACCGAGGGTTGCGGCAGTAGGATTGGCAGCACACAGAGG
710 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACACTGAGG
* * * * * ** *
15637370 GGGACCTGGCCGATCCTCGGTTTACGCATCCCACCCCTTTGGCCAACTGA--GTACTCGTACGCT
775 GGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGT-C-CGCACGCT
* * * *
15637433 CATTTCGTGGGTTAACTTAGCCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTT
838 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
*
15637491 CATTCTCAGTCTAAGATCGG
1 CATTCCCAGTCTAAGATCGG
15637511 GGGGACCAGG
Statistics
Matches: 4620, Mismatches: 572, Indels: 376
0.83 0.10 0.07
Matches are distributed among these distances:
863 13 0.00
864 23 0.00
865 199 0.04
866 8 0.00
867 16 0.00
868 18 0.00
869 2 0.00
870 2 0.00
871 46 0.01
872 1 0.00
873 6 0.00
874 4 0.00
875 4 0.00
876 35 0.01
877 183 0.04
878 20 0.00
879 12 0.00
880 8 0.00
881 8 0.00
882 3 0.00
883 21 0.00
884 33 0.01
885 42 0.01
886 40 0.01
887 28 0.01
888 12 0.00
889 46 0.01
890 9 0.00
891 191 0.04
892 437 0.09
893 300 0.06
894 307 0.07
895 482 0.10
896 39 0.01
897 231 0.05
898 365 0.08
899 480 0.10
900 385 0.08
901 114 0.02
902 128 0.03
903 16 0.00
904 32 0.01
905 4 0.00
906 13 0.00
907 11 0.00
908 29 0.01
909 100 0.02
910 47 0.01
911 52 0.01
912 11 0.00
913 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACAAGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACAAAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCGTGAAAATACAAAACGAGTCATCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGC
CGGCGTAGTGCCTGCCCTCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACACTGAGGGGGACC
CGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
Found at i:15634822 original size:27 final size:27
Alignment explanation
Indices: 15634784--15634836 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
15634774 GTTGACTTAG
15634784 GCATACGGAGTT-ATTGCCCAGTCTAAA
1 GCATACGGAGTTCA-TGCCCAGTCTAAA
15634811 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
15634837 GATCGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (27 bp):
GCATACGGAGTTCATGCCCAGTCTAAA
Found at i:15635472 original size:16 final size:16
Alignment explanation
Indices: 15635451--15635483 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15635441 CTGGTGTAGT
15635451 GCCCGCCAGCCCGCTC
1 GCCCGCCAGCCCGCTC
*
15635467 GCCCGCCCGCCCGCTC
1 GCCCGCCAGCCCGCTC
15635483 G
1 G
15635484 TTTCATCGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.64, G:0.27, T:0.06
Consensus pattern (16 bp):
GCCCGCCAGCCCGCTC
Found at i:15635709 original size:26 final size:26
Alignment explanation
Indices: 15635661--15635710 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15635651 GTTGACTTAG
**
15635661 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15635687 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
15635711 GAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15636597 original size:26 final size:26
Alignment explanation
Indices: 15636561--15636613 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15636551 GTTAACTTAG
15636561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15636587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15636613 G
1 G
15636614 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15637483 original size:26 final size:26
Alignment explanation
Indices: 15637454--15637505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15637444 TTAACTTAGC
15637454 CATACGGAGTTCATTC-CTAGTCTAAG
1 CATACGGAGTTCATTCTC-AGTCTAAG
15637480 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCTCAGTCTAAG
15637506 ATCGGGGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCTCAGTCTAAG
Found at i:15638948 original size:26 final size:26
Alignment explanation
Indices: 15638912--15638964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15638902 TGGGACTTAG
* *
15638912 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15638938 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15638964 G
1 G
15638965 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15639836 original size:26 final size:26
Alignment explanation
Indices: 15639802--15639875 Score: 130
Period size: 26 Copynumber: 2.8 Consensus size: 26
15639792 GGGACTTAGA
15639802 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
15639828 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
15639854 CATACGGAGTCCATTCCCAGTC
1 CATACGGAGTTCATTCCCAGTC
15639876 AAAGATTGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15640757 original size:26 final size:26
Alignment explanation
Indices: 15640721--15640772 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15640711 GGGACTTAGA
*
15640721 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
15640747 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
15640773 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:15641651 original size:26 final size:26
Alignment explanation
Indices: 15641615--15641667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15641605 GTTGTCTTAG
*
15641615 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15641641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15641667 G
1 G
15641668 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15642048 original size:895 final size:895
Alignment explanation
Indices: 15638046--15643430 Score: 7062
Period size: 893 Copynumber: 6.0 Consensus size: 895
15638036 TGCGGCAGCA
* *
15638046 CATACGGAGTTCATTCCCAATCTAAGATCGGATC-GAACCGAGGGTTGCGGCAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15638110 CACGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCAAAG-
65 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * * ** *
15638174 AACTTGACCGGCGGCATTTGGGTTCTGACGATCAAGGGGG-CTGGGGGGTGTGCGCACATGACAT
130 AAC-TGACCGACGGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG--AT
* *
15638238 G-A-GATGGGTGCAGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
192 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACT
* * *
15638301 CATACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-
* *
15638366 AAATGGGTACACTTTTTTCAAATGGTCAC---ATCTTGTACACTTCGAGTTTTTAGTTGAA-TTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
15638427 TTTATGCATGCCAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGA
385 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
15638492 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAACACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
15638557 TCTTACCATGAAACTTCACGTAAAGGGTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15638622 GGCATTGGCATGCAAAAATATGAAGTTGTGCCTAAACCCACCTACTACCCTATCGCTCTACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
15638687 TGCGCATCCCGTATCTTTGGCCGGCATAGTGCCCACCCGCCCGCCCACTTGTTTCGTCGGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** ** * * *
15638752 TTAGGCATACGGAGTTCATTCCCATTCTAAGATTGGATTGGACCAAGGGTTGTGGCAGCAAGATC
707 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGTAGGATC
** * *
15638817 GGCAGCACACAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACGGCTG
772 GGCAGCACGTAGAGGGGGACCCAG-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGG-CCGCTG
*
15638881 AGCGCCCGCACGTTCATTTCGT-GG--GACTTAGGCATACGGAGTTCATTCCCAGTTTAAG
835 AGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
15638939 CATACCGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGAGGGAGCACATGTTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
15639004 TCG-GTCATGTGCTGGTGTCATATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAG-
66 TCGAG-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * *
15639067 AACTTGACCGGCGGCAATGGGTTTCCGGCGATC-GGGGGGCCGGGGGGGGTGTGTGCACATGATG
130 AAC-TGACCGACGGCAATGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* * ** ** *
15639131 TACGATGGGTGCTGGT-TTTGGCCCGTATATTGG-CCCCTATAGCTCATCATTCCTCAAGAACTC
193 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTC
*
15639194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15639259 ATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
15639324 TGTGCATGCCAACAAAATTAC----ATCACGTCTACCAAGTTTGGGGCTAAAACTCTTTCTGAAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
15639385 AAATTTTAAAAAATCCCGAACAGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
15639450 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15639515 CATTGGCATGCAGGAAATATGAAGATGTG-CTAAACCCACCTATCACCCTATCGATCCACGGGCT
582 CATTGGCATGCA-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGC-
* * * * *
15639579 TTGCGCAT-CCGTCTCTCTAGTCGACGTAGTGCCCGCCCCGGCCCGCCCGCTCGTTTCATCGGTT
644 TTGCGCATCCCGTCTCTCTGGCCGGCATAGT----GCCCC-GCCCGCCCGCTCGTTTCGTCGGTT
* * * *
15639643 TGCTTAGGCATATGGAGTTCATTCCCAGTCT-A-A---GATCAGACTGAGGGTTTCGGTAGTAGG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGTAGG
** *
15639703 ATCGGCAGCACGTAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGC
769 ATCGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC-GC
* *
15639768 TGAGCGCCCGCATGTTCATTTCGTGGGACTTAGACATACGGAGTTCATTCCCAGTCTAAGCATAT
833 TGAGCGCCCGCACGTTCATTTCGTGGG---T-----T---GA---C-TT---AG-----GCATAC
15639833 GGAGTTCATTCCCAGTCTAAG
875 GGAGTTCATTCCCAGTCTAAG
* * *
15639854 CATACGGAGTCCATTCCCAGTCAAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
15639919 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGTTGGGGCACCATCGTCGAAGCATCGTCAGAGAA
66 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAA
* * * **
15639984 CCTGACTGACGGCAATGGGGTTCCGATGATCGTAGGGGCCGGGGGGGTGTGCGCACATGATGTAC
131 ACTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTAC
*
15640049 GATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACA
* *
15640114 CCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15640179 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTCTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
15640244 GCATGCCAATAAAAATACAAGGATCATGTCTACCAACTTTGGGGGCAAAACTCCTTCTGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
15640309 TTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
15640374 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15640439 TGGCACGCAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15640504 ATCCCGTCTCTCTGGCCGGCATAGTG-CCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCAT
650 ATCCCGTCTCTCTGGCCGGCATAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * *
15640568 ACGAAGTTAATTCCCAGTCGAAGATCGGATCAGACCGAGGGTTTCAGTAGTAGGATCGGCAGCAT
715 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCAC
* * *
15640633 GTAGAGGGGGACCCAGCCAATCCCCAGCTTGCGCATCCCGCCCTTCTGGCCGACTGAGTGCCCGC
780 GTAGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGC
* * *
15640698 ATGTTCATTCCGT-GG--GACTTAGACATACGGAGTTCATTCCCAGTCTAAG
844 ACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * **
15640747 CATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
15640812 TCGAGCATGTGCTGGAGCCACATTTTTCTTCGTTGGGGCACCATCGTCGAAGCATC-ACAGGAGA
66 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCA-GAGA
* ** *
15640876 ACCTGACCGACGGCAATGGGGTTCCGACGATCGCAGGGGCCGGGGGGGTGTGCGCACATAATGTA
130 AACTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
** *
15640941 CGATGGGTGCTGGTTTTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCAC
*
15641006 ACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15641071 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
15641136 TGCATGCCAATAAAAATAAAAGGATCATGTCTACCAAGTTTGGTGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15641201 ATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15641266 GCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCT
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15641331 TTGGCATGCAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15641396 CATCCTGTCTCTCTGGTCGGCATAGTG-CCTGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
649 CATCCCGTCTCTCTGGCCGGCATAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
15641460 TACGGAGTTCATTCCCAGACTAAGAACGGATCAGATTGAGGGTTGCAGCAGCAGGATTGGCAGC-
714 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCA
* * * * * * *
15641524 GGTAGAGGGGGACTCTGCCGATCCCCGGCTTACCCATCCCGCCCTTCTGGCCAGCTGAGCGCCCG
779 CGTAGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCG
* * * * *
15641589 CACGCTCGTTTCGTGGGTTGTCTTAGGCATACAGAGTTCATTCCCAGTGTAAG
843 CACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
15641642 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCAAGGGTTGTGGTAGCAAATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
15641707 TCGAGCATGTGCTGGTTCCGCATTTTTCTTCGTCGAGGCACCATC-ACTGGAGCATCGCCGGAGA
66 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCAGAGA
* * *
15641771 AACTGACC-AGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
130 AACTGACCGA-CGGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
15641835 GCCATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTGAAGAACTCA
194 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTG-AGAACTCA
* *
15641900 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15641965 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15642030 ATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15642095 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTGAAAAATCTTGAAAAATAGAAAACGAGTCGTCA
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
15642160 TGCCATGAAACCTAACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * *
15642225 ATTGGCACATAGAAATATGAAGATGTGACTAAACCCACCTACCATCCTATCGATCCACGGCGTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
***
15642290 GCATCCCGTCTCTCTGGCCGATGTAGTGCCCAACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCATAGTG-CC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
15642355 GGCATACGGAGTTCATTCCCAGTCTAATATTGGACCAGACTGAGGGTTGCGGCAGTAGGATCGGT
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGTAGGATCGGC
** * * * ** * *
15642420 AGCACACAGAGGGGGACCCATCTGATCCCCAACTTGCGCATCCCATCGCTCTGGCCGACTGAGCA
775 AGCACGTAGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCG
* * * *
15642485 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-TCAGTCTAAG
839 CCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
15642541 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
** *
15642606 TCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGCCAGAGAA
66 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAA
* * * * * *
15642671 CCTGACCGACGGCATTGGGGTTTCGATGATCGGGGGGG-CTGGGGGGTGTGCGCACATGATGTGC
131 ACTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTAC
* * *
15642735 GATGGATGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAGGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGA-GAACTCACA
* *
15642800 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15642865 GGGACATTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
15642930 CCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTCCGATAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
15642995 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGACTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* **
15643060 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGAAATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15643125 TGGCATGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
15643190 ATCCCATCTCTCTGGCTGGCATAGAGCCTGCCCCCCTGCCCGCTCGTTTCGGT-GGTTGGCTTAG
650 ATCCCGTCTCTCTGGCCGGCATAGTGCC--CCGCCC-GCCCGCTCGTTTC-GTCGGTTGGCTTAG
* * * ** *
15643254 GCCTACGGAGTTCATTCCTAGTCTAAGATTGGATTGGACCGAGGGTTGC-G-A-T---A---GCA
711 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * ** * * * *
15643310 -CA--TAGAGGTGGACCC-GACCGATCTCGGGCTTACGCATCCCGCCCCTATGGCTGGCTGAGTG
776 GCACGTAGAGGGGGACCCAG-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGC-CGCTGAGCG
* * * *
15643371 CCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
839 CCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15643428 CAT
1 CAT
15643431 TCAAAGTTCA
Statistics
Matches: 3982, Mismatches: 423, Indels: 180
0.87 0.09 0.04
Matches are distributed among these distances:
886 83 0.02
887 13 0.00
888 3 0.00
889 98 0.02
890 2 0.00
891 224 0.06
892 193 0.05
893 921 0.23
894 110 0.03
895 657 0.16
896 3 0.00
897 10 0.00
898 528 0.13
899 246 0.06
900 87 0.02
901 2 0.00
902 1 0.00
903 2 0.00
905 2 0.00
906 1 0.00
907 2 0.00
910 2 0.00
914 49 0.01
915 200 0.05
916 25 0.01
917 166 0.04
918 3 0.00
919 112 0.03
920 37 0.01
921 200 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAA
ACTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTAC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCATAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACG
TAGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCGCCCGCAC
GTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:15642550 original size:25 final size:26
Alignment explanation
Indices: 15642515--15642566 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15642505 GTTGACTTAG
* *
15642515 GCATACGGAGTTCATT-TCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15642540 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15642566 G
1 G
15642567 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15643705 original size:26 final size:26
Alignment explanation
Indices: 15643669--15643721 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15643659 GTTGACTTAG
*
15643669 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
15643695 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15643721 G
1 G
15643722 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15644599 original size:26 final size:25
Alignment explanation
Indices: 15644564--15644615 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15644554 GTTGACTTAG
15644564 GCATAGGAGTTAATTCCCAGTCTAA
1 GCATAGGAGTTAATTCCCAGTCTAA
*
15644589 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTAATTCCCAGTCTAA
15644615 G
1 G
15644616 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATAGGAGTTAATTCCCAGTCTAA
Found at i:15645201 original size:895 final size:895
Alignment explanation
Indices: 15643445--15645348 Score: 2893
Period size: 895 Copynumber: 2.1 Consensus size: 895
15643435 AGTTCATTAT
* * * *
15643445 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCGGCCCG-TCGACTTGTTTGGTCAGTTGGCTT
1 GCATCCCGTCTCTCTGGTCGACTTAGTGCCCGCCCGCCCGCTCG-CTTGTTTCGTCGGTTGGCTT
* *
15643509 AGGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGACCGAGGGTTGCGGCAGCAAGATCGG
65 AGGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGACCGAGGGTTGCAGCAGCAAGATCGA
* * * * *
15643574 TAGCACATGAGGGGGTCTCGACTGATCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCG
130 TAGCACATAAGGGGGTCCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
15643639 CCCGGACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
195 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAGCATACGGA
*
15643704 GTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTACAACAGCACATGCTGGGCTCGAGCAT
260 GTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACAACAGCACATGCTGGGCTCGAGCAT
* * *
15643769 GTGCTGGTGCCAGATTTTTCTTCGTCGGGGCACAATCACAGGAGCATAACCGAAGAACCTGATCG
325 GTGCTAGTGCCAGATTTTTCTTCATCGGGGCACAATCACAGGAGCATAACCGAAGAACCTGACCG
* * *
15643834 ACGGCATTGGGGTTCCGATGATCGGGGGGTCGGGGGGTGCGCACATGATGTGCGATGGGTGCTGG
390 ACGGCATTGGGGTTCCGATGATCGGGGGGCCGCGGGGTGCGCACATGATGTCCGATGGGTGCTGG
* *
15643899 TATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
455 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * * *
15643964 GCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTT
520 GCATTTGAGATTGTACAGGTTTGCTGCTAGTAACCATTAAAGTGTATGAAATGGGGACACTTTTT
* **
15644029 TGAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
585 TCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTACACATGCCAACAA
* * *
15644094 AAATAAAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATC
650 AAATAAAAGGATCACCTCCACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATC
* * *
15644159 CTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTC
715 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTC
* * * * **
15644224 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAGAATTGCTTTGGCATGCAAAA
780 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCAATAAAAATGGCATTGGCACACAAAA
*
15644289 ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
845 ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * ** *
15644340 GCATCCCGTCTCTCTGGTCGACTTAGTGCCCGCTTGCCTGCCCGCTCATTTCGTCGGTTAGCTTA
1 GCATCCCGTCTCTCTGGTCGACTTAGTGCCCGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCTTA
* * *
15644405 GGCATACGGAGTTCATTCTCAGTCTAGGATCGGATCAGACTGAGGGTTGCAGCAGCAGGATCGAT
66 GGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGACCGAGGGTTGCAGCAGCAAGATCGAT
* * * **
15644470 AGCACCA-AAGGGGGTCCCGACCGATCCCCGGCTTGCGTATCCTGCCCCTCTGGTCGGCTGAGTT
131 AGCA-CATAAGGGGGTCCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
*
15644534 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATA-GGAGTTAATTCCCAGTCTAAGCATACGGA
195 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAGCATACGGA
* * * * *
15644598 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACAGCTGCACATGCTGGGCTTGGGCAT
260 GTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACAACAGCACATGCTGGGCTCGAGCAT
* * *
15644663 GTGCTAGTGCCAGATTTTTCTTCATCGGGGCACAATCGTC-GGAGCATCACCGGAGAACCTGACC
325 GTGCTAGTGCCAGATTTTTCTTCATCGGGGCACAATC-ACAGGAGCATAACCGAAGAACCTGACC
15644727 GACGGCATTGGGGTTCCGATGATCGGGGGGGCCGCGGGGTGCGCACATGATGTCCGATGGGTGCT
389 GACGGCATTGGGGTTCCGATGATC-GGGGGGCCGCGGGGTGCGCACATGATGTCCGATGGGTGCT
*
15644792 GGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
453 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
15644857 GAGCATTTGAGATTGTACAGGTTTGCTGCTAGTAACCATTAAAGTGTATGAAATTGGGACACTTT
518 GAGCATTTGAGATTGTACAGGTTTGCTGCTAGTAACCATTAAAGTGTATGAAATGGGGACACTTT
* * * *
15644922 TTTCAAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTTGCTGAATTTTTTTGCACATGCCAAC
583 TTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTACACATGCCAAC
* * * * *
15644987 AAAAATACAAGGATCACCTCCACCAGGTTTGGGGCCAAAACTCCTTTCAAAAAATTTTTAAAAAA
648 AAAAATAAAAGGATCACCTCCACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAA
* *
15645052 TCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
713 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACT
* * *
15645117 TCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCAATAAAAATGGCATTGGCACACAG
778 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCAATAAAAATGGCATTGGCACACAA
* * *
15645182 AAATATGAAGATTTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGC
843 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15645235 GCATCACGTCTCTTTGGTCG-GTGTAGTGCCCGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCTT
1 GCATCCCGTCTCTCTGGTCGACT-TAGTGCCCGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCTT
* *
15645299 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAGCCAAGGGTTG
65 AGGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGA-CCGAGGGTTG
15645349 TGACAGCACA
Statistics
Matches: 904, Mismatches: 99, Indels: 12
0.89 0.10 0.01
Matches are distributed among these distances:
894 169 0.19
895 731 0.81
896 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATCCCGTCTCTCTGGTCGACTTAGTGCCCGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGACCGAGGGTTGCAGCAGCAAGATCGAT
AGCACATAAGGGGGTCCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACAACAGCACATGCTGGGCTCGAGCATG
TGCTAGTGCCAGATTTTTCTTCATCGGGGCACAATCACAGGAGCATAACCGAAGAACCTGACCGA
CGGCATTGGGGTTCCGATGATCGGGGGGCCGCGGGGTGCGCACATGATGTCCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTGTACAGGTTTGCTGCTAGTAACCATTAAAGTGTATGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTACACATGCCAACAAA
AATAAAAGGATCACCTCCACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCC
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCAATAAAAATGGCATTGGCACACAAAAA
TATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
Found at i:15646209 original size:26 final size:26
Alignment explanation
Indices: 15646173--15646225 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15646163 GTTGACTTAG
15646173 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
*
15646199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
15646225 G
1 G
15646226 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:15646771 original size:26 final size:26
Alignment explanation
Indices: 15646741--15646793 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15646731 GTTGACTTAG
15646741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15646767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15646793 G
1 G
15646794 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15647138 original size:554 final size:559
Alignment explanation
Indices: 15646069--15647183 Score: 1637
Period size: 554 Copynumber: 2.0 Consensus size: 559
15646059 TTGTGGCATT
* * * * * * *
15646069 AGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTCACGCATCCCGCCCGTCTGGTC
1 AGGATCGGCAGCACCCAGAGGGGGACCCGACCGATCCCAGACTCACGCATCCCACCCCTCTGGCC
* *
15646134 GGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAA
66 AGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAA
*
15646199 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGGGTTACGGCAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGGGCTACGGCAGCACATGCTGGG
* * *
15646264 CTCCGACATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACAATCATCGGAGCGTCGTCGGAGA
196 CTCCGACATGTGCTGGTGCCACATTTTTCTTC-TC--GG----A-CA-CGGAGCATCGACGGAGA
* *
15646329 ACCTGACCGACAGCATTAGGGTTTCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
252 ACCTGACCGACAGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGTATGCGCACATGATGTGC
* * *
15646394 AATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGACAAGTCACA
317 AATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCATAATCAAACCTCCACAACTCACA
* * *
15646459 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAATGTGTGAAATG
382 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATG
* *
15646524 AGGATACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGT
447 AGGATACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGT
*
15646589 GCATGCAAAAAAAAATACAAGGATCATGCCTACCAAGTTTGCGGTAGC
512 GCATGCAAAAAAAAATACAAGGATCACGCCTACCAAGTTTGCGGTAGC
* * ***
15646637 AGGATCGGCAGCACCCAGAGGGTGACCCGACCGATCCCAGGCTTGTGCATCCCACCCCTCTGGCC
1 AGGATCGGCAGCACCCAGAGGGGGACCCGACCGATCCCAGACTCACGCATCCCACCCCTCTGGCC
* *
15646702 AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 AGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAA
* * * *
15646767 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGCTGCGGTAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGGGCTACGGCAGCACATGCTGGG
* *
15646832 CTCGGGCATGTGCTGGTGCCACATTTTTC-T-TC-G-C-CGGAGCATCGACGGAGAACCTGACCG
196 CTCCGACATGTGCTGGTGCCACATTTTTCTTCTCGGACACGGAGCATCGACGGAGAACCTGACCG
* ** * *
15646892 ACGGCATTTTGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGC
261 ACAGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGTATGCGCACATGATGTGCAATGGGTGC
* * * * *
15646957 TGGTACTTGGCCTTTTTATTGGCCCCCTATCCATCATCAAACCTCCAGAACTCACACCCCCTTAA
326 CGGTACTTGGCCCTTATATTGGCCCCCTATCCATAATCAAACCTCCACAACTCACACCCCCTTAA
* *
15647022 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACAT
391 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGAGGATACAT
* *
15647087 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
456 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCAAA
* *
15647152 CAAAAATACAAGGATCACGTCTACCAAGTTTG
521 AAAAAATACAAGGATCACGCCTACCAAGTTTG
15647184 GGGCCAGAAC
Statistics
Matches: 494, Mismatches: 53, Indels: 14
0.88 0.09 0.02
Matches are distributed among these distances:
554 289 0.59
556 1 0.00
562 1 0.00
565 2 0.00
567 1 0.00
568 200 0.40
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.25
Consensus pattern (559 bp):
AGGATCGGCAGCACCCAGAGGGGGACCCGACCGATCCCAGACTCACGCATCCCACCCCTCTGGCC
AGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGGGCTACGGCAGCACATGCTGGG
CTCCGACATGTGCTGGTGCCACATTTTTCTTCTCGGACACGGAGCATCGACGGAGAACCTGACCG
ACAGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGTATGCGCACATGATGTGCAATGGGTGC
CGGTACTTGGCCCTTATATTGGCCCCCTATCCATAATCAAACCTCCACAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGAGGATACAT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCAAA
AAAAAATACAAGGATCACGCCTACCAAGTTTGCGGTAGC
Found at i:15647665 original size:26 final size:26
Alignment explanation
Indices: 15647629--15647681 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15647619 GTTGACTTAG
*
15647629 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15647655 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15647681 G
1 G
15647682 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15648552 original size:26 final size:26
Alignment explanation
Indices: 15648523--15648575 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15648513 GTTGACTTAG
*
15648523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
15648549 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
15648575 G
1 G
15648576 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:15648952 original size:884 final size:884
Alignment explanation
Indices: 15646627--15659282 Score: 9319
Period size: 884 Copynumber: 14.1 Consensus size: 884
15646617 CCTACCAAGT
* * * * * * *
15646627 TTGCGGTAGCAGGATCGGCAGCACCCAGAGGGTGACCCGACCGATCCCAGGCTTGTGCATCCCAC
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCCGACTTGCGCATCCCGC
*
15646692 CCCTCTGGCC-AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
65 CCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
15646756 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGCTGCGGTAG
129 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * *
15646821 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-C-CGG-AGCATC-G-ACGGA
194 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCTCGGA
** * *
15646881 GAACCTGACCGACGGCATTTTGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGCACATGATGT
259 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
15646946 GCGATGGGTGCTGGTACTTGGCCTTTTTATTGGCCCCCTATCCATCATCAAACCTCCAGAACTCA
324 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15647011 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
389 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15647076 TGGGGATACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
454 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTT
*
15647141 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCATT-CG-AA
518 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAA
*
15647204 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
582 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15647269 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTTTGAATTTACAAGCCATAAAAATGG
647 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15647334 CATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTG
712 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15647399 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTG
777 CGCATCCCGTCTCTCTGGTCGACGTAGT----TCCCG----CCCGCCAGCTCGTTTCGTCGGTTG
** *
15647464 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGG
834 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * * * * *
15647515 TTGCAGCAGCTA-GATCGGCAGCACGTAGAGGGGGACCCGACCGATCGCTGACTTACGCATCCCG
1 TTGCGGTAGC-AGGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCCGACTTGCGCATCCCG
* * * * ** *
15647579 CCCCTATGGTCG-GTCGAGCGCCTGCACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCA
64 CCCCTCTGGCCGACT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
15647643 TTCCCTGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG-CCAAGGGTTACGGTA
128 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA
* * ** *
15647707 GCATATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCCCCGAGGCACCATCGTTGGAG
193 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC----G-G
* * *
15647772 CATCGCCAGAGAACCTGACCGACGGTATTGGGGTTCCGACGATTGGG-GGAGCCGAGGGGTGTGC
253 C-TCG---GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGG-GCCGGGGGGTGTGC
*
15647836 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
313 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
15647901 TCAAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAA
378 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
15647966 AGTGTTTGAAATGGGGATACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGC
443 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGC
15648031 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
507 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* **
15648096 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAA
572 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * *
15648161 ACGAGTCGTCCTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTTTGAATTTACAAGCC
637 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
15648226 ATAAAAATAGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
702 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
15648291 CCACGGCTTGCGCATCCCGTCTTTCTGGTCGACGTAGTTCCCGCCCGCCAGCTCATTTCGTCGGT
767 CCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCGCCAGCTCGTTTCGTCGGT
*
15648356 TGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
832 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * *
15648409 TTGCGGTAGCAGGATCGACAGCACACAGAAGGGGACTCGACCGATCCCCGACTTGCTCATCCTGC
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGAC-CGACCGATCCCCGACTTGCGCATCCCGC
* * * * *
15648474 CCCTCTGGCTGGCTGAACGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATT
65 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
15648539 CCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCAGACCGGATCGAGGGTTACGGCAGC
130 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * * *
15648604 ACATGCTAGGCTAGAGCATGTGCTGGTACTGCATTTTTCTTCGTCGGGGCACCATC-G-TCGGAG
195 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCTCGGAG
** *
15648667 AACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTG
260 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTG
15648732 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
325 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15648797 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCTAGTAGCAATTAAAGTGTCTGAAAT
390 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15648862 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTCTTAGCTGAATTTTTTTG
455 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTAGCTGAATTTTTTTG
* ** *
15648927 TGCATGCCAAAAAAAATTGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAA
519 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15648992 ATTCTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
584 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15649057 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCA
649 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15649122 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTG
714 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15649187 CATCCCGTCTCTTTGGTCGACGTAG-T---GCCCGCCCGCTTGATTCGTCGGTTGGCTTAGGCAT
779 CATCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * *
15649248 ACGGAGTTCATTCCCAGTCTTAGATTGGATCAGA-TCGAGGG
844 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGG
** * * * *
15649289 TTATGGTAGCAGGATCGGCAGCACGCAGACGGGGACCCGACCGATCCCCGACTTACGTATCCCGC
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCCGACTTGCGCATCCCGC
*
15649354 CCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTC----G-TG-----GGC-T---GA---C-TT
65 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* *
15649401 ---AG-----GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGGCAGC
130 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* *
15649458 ACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCA
195 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC-G-GC-
* * *
15649523 TCGTCGTAGAACCTGACCGACGGCATTGGGGTTCC-AGTGGTCGGGGGGGCCGGGGGGTGTGCGC
254 TCG--G-AGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGAGGGCCGGGGGGTGTGCGC
* * * *
15649587 ACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTG
315 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
15649652 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAG
380 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
15649717 TGTCTAAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
445 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTG
* * *
15649782 AATTTTTTTGTGCATGCCAACAAAAATACATGGATCACATCTACCAAATTT-GGGCCAAAACTCC
509 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
15649846 TTCCGAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCTTGAAAAATAGAAAAC
574 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
15649911 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
639 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
15649976 AAAAATGGCATTGGCACGTACAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCC
704 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** *
15650041 ACGGCTTGTGCATCCCGTCTCTCTGGTCGGTGTAGTGCCTGCCCGTCCGTCCGCCTGCTCGTTTC
769 ACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGT---T-CCCG--C--CCGCCAGCTCGTTTC
* * *
15650106 GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGATCC-GACTGAGGG
826 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACTGAGGG
* * ** * * * *
15650165 TTGCGGCAGTAGGATCCG-CAGCACGTTGAGGGGGAGCCGGCCGATCCTCGGCTTGCGTATCCCG
1 TTGCGGTAGCAGGAT-CGACAGCACGCAGAGGGGGA-CCGACCGATCCCCGACTTGCGCATCCCG
* * * * * * * * *
15650229 TCCCTCTTGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTCGACTTAGGCATCCGAAGTTCAT
64 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * *
15650294 TCTCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTAGCGACAA
129 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * *
15650359 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATC-AC-CGGA
194 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCTCGGA
* * ** *
15650422 GAAACTGACC-AGCAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGATGTGCGCACATGAT
259 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGG-TGTGCGCACATGAT
15650486 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
322 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
15650551 CACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
387 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
15650616 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
452 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTT
* ** ** *
15650681 TTGGTGCATGCCAAAAAAAATACAAGGATCGACAAC-ACACAGAG-GAGGACCCGGCC--GA-TC
516 TT-GTGCATGCCAACAAAAATACAAGGATC-ACGTCTAC-CA-AGTTTGG----GGCCAAAACTC
****** * ****** * * * ** * ** * ** *
15650741 C--CCGACCTGCGTAT-CCCGCCCCTCTG-GCTGACTGAGCACTTT---TTATGGGTTG-ACTAG
573 CTTCCGAAAAAATTTTAAAAAATCC-C-GAACCG--TAAAAAGTTTCAAAAAT-CG-TGAAAAAT
* * * * * ** *
15650798 GGCATACGGAGTTCGTTCCCAGTCTAAG-CAT-ACAGAGTTCATTCCCAGTGTAAGATCGGACTG
632 AGAAAAC-GAG-TCG-T--C--T-T--GCCATGA-A-A---C-TTCAC-GTG-AAG-GCTTA-AG
* * ** * * *** ** * ** * *
15650861 GG-CCAAGGGTTGCA-GCA-GCACATGCTGGGC-TCGAGCCTGTGC--TGGTGC-CACATTTTTC
677 GGACC-A---TTGTATGAATTTACAAGC----CAT-AAAAATG-GCATTGGCACGCAGAAATATG
*** * * * * * **** * * * * ** *
15650919 TTCATCGGGGCACCATCACCGAAGCATCACCAGAGAACCTGATCAATGGCATTGAGGTTCCC-AC
732 AAGAT--GTGC-CTA-AACC-CA-CCT-ACCACCCTATC-GATCCACGGC-TTGCGCATCCCGTC
** * ** * ** * ** * * *
15650983 GATCGGGGGGCCGGGGGGT---GTGCGCACATGAT-G-TGCGATGGGTGCTGGTACTT-GGCCCT
788 TCTCTGGTCGAC-GTAGTTCCCGCCCGC-CA-GCTCGTTTCG-TCGGT--TGG--CTTAGG--C-
* **** * * ** ** * *
15651042 TATATTGGCCCCCTATCCCTCA-TCAAACCTCAAGAACTCACACTCA--A
842 -ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC-AG-AC-CGGACTGAGGG
*** ** * * ** ** ** * * *
15651089 TTAAAG-AGCATTTGTGATTTTACAGGTTTACTGCCAGTA--GGCA-TTAAAG-TGTCTGAAATG
1 TTGCGGTAGCA---G-GA-TCGACA-G--CAC-G-CAG-AGGGGGACCGACCGATCCCCG-ACTT
* ***** *** * ** * ***** ** * ** *
15651149 GAGACA-CTTTTTACAAATGGTC-ACAAATCTTGTACACTTTAAGTTT--TTAGTTGAATTTTTT
54 GCG-CATC-CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT-CGTTTCGTGGGTTG-A---CTT
* ** * * ** * * ** * *
15651210 TGTGCATGCCAACAAAAATACATTGTATCAATTTACAAGCCATA-AAAATGGCATTGGCACGCAG
112 AG-GCAT----AC-GGAGTTCA-T-TCCCAGTCT--AAG-CATACGGAGT-TCATT--C-C-CAG
* ** ** * ** ** ** * * ** * *
15651274 AAATATGAAGATGTG-CCTAAACCCA-CCTACCATC-CCATCGATCCACGGCTTGCGCATCCCGT
161 ---TCT-AAGATCAGACC-GGACCGAGGGTTGCGGCAGCA-C-ATGCTGGGCTCGGGCAT---GT
** * ** * * * **** * * * * * **
15651336 -CTCTCTGGCCGGCGTAGTGCCT-GCCCACCCGCTCATTTC-G-TCGGTTG-GCTTAGGCATACG
216 GCT-GGT-GCC-GCATTTTTCTTCGTCGGGGCAC-CA--TCGGCTCGG-AGAACCT-GACCGACG
** * * * * * * * *
15651396 G-AGTT--CATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
273 GCA-TTGGGGTT-CC-G---ACGATCGGGA--GGGCCGGGGGGTG-TGC-GCACATGATGTG--C
* * **** ** * ** * * * * * *
15651457 GA-GCATGTGCTGGTGCCGTATTTTTCTT-CGTCGGGTCACTATCACTGGAGC-ATCATCGGAGA
326 GATG--GGTGCTGGT-AC-T-TGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTC-GAGA
* ** * * * * ** **
15651519 AC-CAGACCGGC-----G-GCA-TTGGGGTTTCGACA-ATCAGAGGGCCGAGGGGGTATGGCACA
384 ACTCACACCCCCTTAAAGAGCATTTGAGATTT-TACAGGTTTG-CTGCC-A----GTA--GC-C-
* * * * * * * * ** ** *
15651575 TGATGTGCGATGGGTGCTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATC-AAACCTT
438 --AT-T--AAAGTGT-CT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAAATCTT
* * *
15651637 GAGAACTCACACCCCCTTAAAGAGCATTTA--AG-ATTTTATAGGTT-TGC-TGCCAGTAGCTAT
488 --G---T-ACA----CTT--CGAG-TTTTAGCTGAATTTT-T---TTGTGCATGCCA--A-C-A-
* * * * ** * *
15651697 TAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-CGAG
531 -AAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA-
** ** **
15651757 TTTTTGACTGAATTTTTTTTGTCCATTACAACAAAAATACAAGGATCACATC-TACCAAGTTTGG
580 ------A---AA-----AAT-T---TT---A-AAAAAT-C-CCGA--AC--CGTAAAAAGTTT--
* * * *
15651821 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTTGAACCGTAAAAAGTTTCAAAAATCTTGA
615 ---CAAAAAT-CGT--G-AAAAA---T--AGAA-----AA-CG-----AG--TC----GTCTTG-
** * *
15651886 AAATAAAAACGGGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATT
650 CCAT-GAAA-------------C-T------TCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
15651951 TACAAGCCATAAAAATGGCTTTGGCACACCGAAATATGAAGATGTGCCTAAACCCACCTACCACC
694 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
15652016 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
759 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGT----TCCCGCCCGCCAGCT
* ** *
15652081 TGTTTAATCGGTTGGCTTAGGCATA-GGAGCTCATTCCCAGTCTAAGATCAGACCGAGA-TGAGG
820 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-GACTGAGG
15652144 G
884 G
* * * * * *
15652145 TTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTACGCATCTCGC
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCCGACTTGCGCATCCCGC
* *
15652210 CCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
65 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * ** * *
15652275 CCCAGTCTAAGCATACAGAGTTCATTCCAAGCCTAAGATCGGACCATATCGAGGGTTGCGGTAGC
130 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * *
15652340 ACATGCTGGACTCGGGCCTGTGCTGGTGCCGTATTTTTCTTTG-CTGGGGCACCATCGTCGGAGC
195 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCA---TC-G-GC
* *
15652404 ATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCAGG-GGGCCGGGGGGTGTGCGC
254 -T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGC
* * * *
15652468 ACATGATATGCAATGTGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
315 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
15652533 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAG
380 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
15652598 TGTCTTAAATGGGCACACTTTTTTCAAATGTTCACAAAATCTTGTACACCTCGAGTTCTTAGCTG
445 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTAGCTG
* * *
15652663 AATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGG----------
509 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
15652718 --CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAATTTCAAAAATCGTGAAAAATAAAAAAC
574 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
15652781 GAGTCGTCTTGCCATGAAAGTTCTCGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCAT
639 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * * *
15652846 AAAAATGGAATTGGCACGAAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCA
704 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
15652911 ACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCA-CTCGTGTCATTGGTT
769 ACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCG-CCAGCTCGTTTCGTCGGTT
* *
15652975 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
833 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * * *
15653027 TTGCAGTAGCAAGATC-AGCAGCACGCACAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCG
1 TTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCGA-CCGATCCCCGACTTGCGCATCCCG
15653091 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT-GGTATGACTTAGGCATACGGAGTTCA
64 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT-TGACTTAGGCATACGGAGTTCA
* * ** ** *
15653155 TTCCCAGTCTAATCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGATTGAGGGTTGCTGCA
128 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA
* *
15653220 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACTATCACCGGAG
193 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC---CATC-G-G
* * * * * * *
15653285 CATCATCGGAGAACCTAACTGGCGGCATTGGGGTTTCGATGATTGGG-GGGTCGGGGGGGTGTGC
253 ---C-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGG-CCGGGGGGTGTGC
**
15653349 GCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
313 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
** *
15653414 TCGAGAACTCACATGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAA
378 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
15653479 TGTGTCTGAAATGGGGACAATTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGC
443 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGC
*
15653544 TGAATTTTTTTGTGCATGCCAACAAAAATA-AAGGATCACGTCTACTAAGTTTGGGGCCAAAACT
507 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
15653608 CCTTCC-AAAAAATTTTAAAAAAATCCTGAACCTTAAAAAGTTTTACAAATCGTGAAAAATAGAA
572 CCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * * *
15653672 AACGAGTCATCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTGTTAATTTACAAGC
636 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
15653737 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCATCAACCACCTTATCGA
701 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
15653802 TCCATGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAG-T---GCCTGCTC-GCTCGTTTCGTCG
766 TCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCGC-CAGCTCGTTTCGTCG
* * * **
15653862 GTTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCGGACCGGACCAAGGG
830 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* ** * * **
15653917 TTGTGGTAGCAGGATCGACAGCACATAGAGGGGGACTCAATCGATCCCCCG-CTTGCGCATTTCG
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGAC-CGACCGAT-CCCCGACTTGCGCATCCCG
** * *
15653981 CCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
64 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
15654046 TCCCAGTCTAAG-AT-C-G-G---A---CC-G-----GAT----------CGAGGGTTTCGGCAG
129 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * * *
15654085 TACATGCTAGGCTCGTGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGC
194 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--C--G-G-
* ** * * * * *
15654150 ATCATCAGAGAACCTGACCGACAACATTGGGGTTTCGGCAATCGGGGGGGTCGGGGGGTGTGCGC
253 --C-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGC
* * * *
15654215 ACATGATGTGTGATGGCTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTC
315 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
15654280 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAG
380 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
15654345 TGTCTAAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTA
445 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTG
* * *
15654410 AATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCC
509 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
15654475 TTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAAC
574 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
15654540 GGGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
639 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
15654605 AAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
704 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
15654670 ACGGCTTGCACATCCCGTCTCTTTTGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTTGTTTCGTCG
769 ACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGT--T--CCCGCCCGCCAGCTCGTTTCGTCG
* * * * *
15654735 GTTGGCTTGGGCATACGAAGCTCATTCCTAGTCTAAGATCAGTCC-GACCTGAGGG
830 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGG
* * * * * * *
15654790 TTGCGATAGCAAGATCGGCAGCACGCAGAGGGCGACCCGATCGATCCCCGACTTACACATCCCGC
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCCGACTTGCGCATCCCGC
* * *
15654855 CCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATT
65 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* ** ** *
15654920 CCCAGCCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAAGGTTGCGGCAGC
130 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * *
15654985 ACATGCTGGGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCATTGGGGCACCATCACCGGAGCA
195 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C-G-G--
* * * *
15655050 TCATCGGAGAACCTTACTGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCG
253 -C-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCC--GGGGGGTGTGCG
* ** * *
15655115 CACATTATGTGCGATGGGTGCTGGTACTCAGCCCTTATATTGGCCCCCTATCCATCGTCAAACCT
314 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
15655180 CTAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
379 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
15655245 ATGTCTGATATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCT
444 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCT
*
15655310 GAATTTTTTTGTGCATGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAA
508 GAA-TTTTTT-TG--TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
** * * * ***
15655374 ACTCCTTCC-AAAAAATTTTTTAAAA---CGAACTGCAAAGGAGTTTC----A-CCCCAAAGAA-
569 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA-AAGTTTCAAAAATCGTGAAA-AAT
* ** * **
15655429 CG-ATGCAAG-CG---TG-CATCGAATTTTCAC-TG--GG-TT-A--GACCATCTGTATGAATTC
632 AGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATGAATT-
* * * ** * ** *
15655481 T-CATTA-CCA-ATGAATTTG-A-TGGCTTTG-AAAAATAT-AAG-TGT-CCTAAACCTTCATGA
694 TACA--AGCCATA-AAAATGGCATTGGC-ACGCAGAAATATGAAGATGTGCCTAAACCCACCT-A
* * * * * **
15655537 -CACCCTAT-G-GCCA-----TG-GCA---AG--ACGCT-GTCG-C-TA-AT------C-CCAAT
754 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCGCCAGC
* * * * * * ** ** *
15655577 TC-TTTCGTTGATTAGGGTTAGGCATAAGGAATTCATTTCCCAGTCTCAGCACTTGGA-TTGCCA
819 TCGTTTCGTCGGTT-GGCTTAGGCATACGGAGTTCA-TTCCCAGTCTAAG-A-TCAGACCGGAC-
* **
15655640 TTAATG
879 TGAGGG
* * * * * * *
15655646 -TGACGGATA-CTGGATC-ACAACATGCCGAGGGGAACC-TCCGATCCCCG-CTTACGCAT--C-
1 TTG-CGG-TAGCAGGATCGACAGCACGCAGAGGGGGACCGACCGATCCCCGACTTGCGCATCCCG
* * ** * **
15655703 ACCC-CTAG-C-AC-GA-CGATCGCACTGCTC--TTCGTGGGTTGACTTAGCCATACAAAGTTCA
64 CCCCTCTGGCCGACTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
15655761 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCA
128 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA
* * * * *
15655826 GCAAATGCTGGGCTGGGGCATGTGCTGGTGCCACATTTTTCTTTGTTGGGGCACCATCATCTGAG
193 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC-G-G
* * ** ** * *
15655891 CATCGCCGGAGAACTTGACCGACGGCATTTGGGTTCCGGTGATCGGGA-GGCTTGCGGGTGTGCT
253 C-T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCG
** * *
15655955 CACATGATGTGCGATGGGTGCTGGTACTTGGCTGTTATATTGGCCCCTTATCCTTCATCAAACCT
314 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
15656020 TGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAA
379 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
15656085 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTACCT
444 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TAGCT
* *
15656150 GAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
508 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
15656215 CTTCCGAAAAATTTTTTAAAAATCTCGAACCATAAAAAGTTTCAAAAATGGTGAAAAATAGAAAA
573 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
15656280 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
638 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
15656345 TAAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
703 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
15656410 CACGACTTGCGCTTCCC-AC-CTCTGGT-TA-GTA--T---GCCCG-C--TTC--TTCGTC----
768 CACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCGCCAGCTCGTTTCGTCGGTT
* * * * *
15656457 GG-TT--GCA-A--GAATTCATTGCCCAGAGT-TAAGCT-AGAAC-TATCTTGAGTGACC
833 GGCTTAGGCATACGGAGTTCATT-CCC--AGTCTAAGATCAGACCGGA-C-TGAG-G--G
*** * * * * * * * *
15656508 ACCCAAAAG-AGGATGGAATCGATAGGATG-GGAGGGGGACCTGGCTGAT--CC-A-TTGCGCAT
1 TTGC---GGTAGCA-GG-ATCGACAGCACGCAGAGGGGGACC-GACCGATCCCCGACTTGCGCAT
* * * * * * * *
15656567 CAC-ACCCTCTAGCCAACTGA-CGCCCATCATGCTCGTTCACGT---TTGACTTAGCCAGCATAT
60 CCCGCCCCTCTGGCCGACTGAGCGCCC-GCACGCTCGTT-TCGTGGGTTGACTTAG---GCATAC
** * * * *
15656627 GGTTA-TGAATTCCCA-T-TAAGC-T-CGAAGTTCA-TCCCAG-C-AAGAT-GGATGCGGA--AA
120 GG--AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGA
* ** * * *
15656681 GCGGTTGCGACTATGCTGAGCCA--CTTGCGG-TTTGGCATGT-TTAGTGCC-AATTTTTCTATC
182 G-GGTTGCGGC-A-GC--A--CATGC-TG-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCT-TC
* * * *
15656741 AGTTCTGAGGGGC-CCATGTCTGGCATGACGAAGAACTTGATC-A-GCGCAAAT-GGG-TCC-A-
237 -G-TC---GGGGCACCA--TC-GGC-T--CGGAGAACCTGACCGACG-GC-ATTGGGGTTCCGAC
* ** * * **
15656799 AATC--G-GGG--ATGGGGTGTGCTGCAAAT-ATGTGCCCGATGTTGTGCTGGTACTTGGCTGTT
289 GATCGGGAGGGCCGGGGGGTGTGC-GCACATGATGTG--CGATG-GGTGCTGGTACTTGGCCCTT
* * *
15656858 ATATTGGCCCCTTATCCCTCATAAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATT
350 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
15656923 TTACATGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
415 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
15656988 AAAATCTTGTACACTTCGAGTTTCTACCTGAATTTTTTTGTGCATGCCAACAAAAAGAGAAGGAT
480 AAAATCTTGTACACTTCGAGTTT-TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
15657053 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTTAAAAATCCTGAACCGTAAA
544 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* *
15657117 AAGTTTCAAAAATGGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
609 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
15657182 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCTTTGGCACACAGAAATATGAAGATAT
674 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * *
15657247 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCATCTCTCTGGTCGGCGTAG
739 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAG
* * * * *
15657312 -T---GCCCACCCGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGAT
804 TTCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
15657373 CAGACTGGATTGAGGG
869 CAGACCGGACTGAGGG
* * * * * * * * * *
15657389 TTTCGGTAGCAGGATCAACAGCATGCGGAAGGGGACCTGGCCTATCCCCGGCTTGCGCATCACAC
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC-GACCGATCCCCGACTTGCGCATCCCGC
** *
15657454 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATT
65 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * **
15657519 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAAACCAGACCAAGGGTTGTGATAGC
130 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * *
15657584 ACATGCTGGGCTTGGGCATGTGTTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCTGAGC
195 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCA---TC-G-GC
* * * * * *** *
15657648 ATCGCCAGAGAACTTGA-CTAGCAGCATTGGGGTTCCAATGAATC--GATGGTGCATTGGGGTCT
254 -TCG---GAGAACCTGACCGA-CGGCATTGGGGTTCCGACG-ATCGGGA-GG-GCCGGGGGGTGT
* * * * *
15657710 GCTCACATGATGTGCAATGGGTGCTGGTACATGGCTCTTATATTGGCCCCTTATCCCTCATCAAA
311 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
15657775 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
376 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
15657840 AAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTA
441 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TA
* * * *
15657905 GCTGAATTTTTTTGTGCATGCCAAAAAAAAAAAGAAGGATCACGTCTACCAAGTTTAGGGCCAAA
505 GCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
15657970 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCGAACATGGTGAAAAATA
569 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATA
*
15658034 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACA
633 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
15658099 AGCCATAAAAATGACTTTGGCACACAGAAATATGAAGATGTGCCTAACCCCACCTACCACCCTAT
698 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
15658164 CGATCCACGGCTTGTGCTTCCCATCTCTCTGGTCGACGTAG-T---GCCCGCCCGCTCATTTCGT
763 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCGCCAGCTCGTTTCGT
* * *
15658225 CGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACTGGATTGAGGG
828 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * * * * * *
15658282 TTGTGGTAGCAGGATCGGCAGCATGCGGAGGGGGACCTGGCCGATCCCCGACTTACGCATCACAC
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC-GACCGATCCCCGACTTGCGCATCCCGC
* * * * *
15658347 CCCTCTGGCCGACTGAGCCCCCGCATGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTAATT
65 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
** * *
15658412 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGACAGC
130 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * *
15658477 AC--GCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCCTCGTTGGGGCACCATCGTCTGAGCA
195 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC-G-G--
* * * ** ** *
15658540 CGCCGGAGAACTTGACC-AGCGGCATTGTGGTTCCGGTGATC-GGAGGGCTTGGGGGTGTGCTCA
253 C-TCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCA
* * * * *
15658603 CATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATACCTCATCGAACCTTG
316 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
15658668 AGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
381 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
15658733 GTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTCTAGCTGA
446 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TAGCTGA
* * *
15658797 ATTTTTTTATGCATGCCAACAAAAATAGAATGATCACGT-TACCAAGTTTGGGGCCAAAACTCCT
510 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * ** *
15658861 TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAATTTTGAAAATGGTGAAAAATAGAAAACG
575 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
15658926 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
640 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
15658991 AAAATAGCATTGGCATGCAGAAATATGAACATGTGTCTAAACCCACCTACCACCCTATCGATCCA
705 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
15659056 CGGCTTGCGCATCCCGTCTCTCTGG-CTGGCGTACTATCCGCCCGCCCGGCCGCTTGCTCATTTT
770 CGGCTTGCGCATCCCGTCTCTCTGGTC-GACGTAGT-T---CCCGCCC-G-C-C-AGCTCGTTTC
* **
15659120 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGG
826 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * ** * ** * *
15659179 TTGCGGCAGTAGGATCGGGAGCACGCAGAGGGGGATTCGATTGATCCCCGGCTTGCGCATCCTGC
1 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCCGACTTGCGCATCCCGC
* *
15659244 CCCTCTGGCCGGCTGAGCGCCCGCAGGCTCGTTTCGTGG
65 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
15659283 CTCGTTTCGG
Statistics
Matches: 9460, Mismatches: 1526, Indels: 1555
0.75 0.12 0.12
Matches are distributed among these distances:
836 10 0.00
837 46 0.00
838 16 0.00
839 9 0.00
840 195 0.02
841 8 0.00
842 3 0.00
843 168 0.02
844 11 0.00
845 10 0.00
846 9 0.00
847 3 0.00
848 4 0.00
849 3 0.00
850 11 0.00
851 5 0.00
852 17 0.00
853 29 0.00
854 114 0.01
855 26 0.00
856 26 0.00
857 23 0.00
858 5 0.00
859 12 0.00
860 29 0.00
861 6 0.00
862 14 0.00
863 6 0.00
864 564 0.06
865 519 0.05
866 240 0.03
867 264 0.03
868 33 0.00
869 5 0.00
870 27 0.00
871 55 0.01
872 48 0.01
873 190 0.02
874 27 0.00
875 10 0.00
876 155 0.02
877 14 0.00
878 19 0.00
879 7 0.00
880 162 0.02
881 75 0.01
882 341 0.04
883 268 0.03
884 566 0.06
885 421 0.04
886 60 0.01
887 129 0.01
888 319 0.03
889 27 0.00
890 219 0.02
891 312 0.03
892 257 0.03
893 513 0.05
894 447 0.05
895 73 0.01
896 19 0.00
897 150 0.02
898 7 0.00
899 118 0.01
900 13 0.00
901 498 0.05
902 317 0.03
903 19 0.00
904 48 0.01
905 13 0.00
906 2 0.00
907 6 0.00
908 4 0.00
909 3 0.00
910 3 0.00
911 6 0.00
912 4 0.00
913 13 0.00
914 7 0.00
915 12 0.00
916 8 0.00
917 10 0.00
918 9 0.00
919 6 0.00
920 1 0.00
921 6 0.00
922 9 0.00
923 26 0.00
924 21 0.00
925 2 0.00
926 6 0.00
927 2 0.00
928 3 0.00
929 12 0.00
930 14 0.00
931 13 0.00
932 6 0.00
933 10 0.00
934 5 0.00
937 1 0.00
938 8 0.00
939 7 0.00
940 1 0.00
941 8 0.00
942 1 0.00
943 12 0.00
944 9 0.00
946 1 0.00
947 3 0.00
948 3 0.00
950 3 0.00
951 10 0.00
952 22 0.00
954 2 0.00
955 3 0.00
956 9 0.00
957 7 0.00
958 2 0.00
959 10 0.00
960 8 0.00
961 1 0.00
962 2 0.00
963 14 0.00
964 18 0.00
965 12 0.00
966 4 0.00
967 3 0.00
968 8 0.00
969 4 0.00
970 22 0.00
971 14 0.00
972 1 0.00
975 2 0.00
976 1 0.00
978 8 0.00
979 5 0.00
980 8 0.00
981 6 0.00
983 3 0.00
984 5 0.00
985 9 0.00
986 2 0.00
987 5 0.00
989 1 0.00
990 2 0.00
991 7 0.00
992 9 0.00
993 5 0.00
994 9 0.00
995 15 0.00
996 3 0.00
997 8 0.00
998 5 0.00
999 4 0.00
1000 1 0.00
1001 4 0.00
1002 3 0.00
1003 2 0.00
1004 9 0.00
1005 6 0.00
1006 4 0.00
1007 2 0.00
1008 4 0.00
1009 5 0.00
1010 7 0.00
1011 8 0.00
1013 1 0.00
1014 2 0.00
1017 1 0.00
1018 14 0.00
1019 22 0.00
1020 4 0.00
1021 8 0.00
1022 2 0.00
1023 9 0.00
1024 131 0.01
1025 105 0.01
1026 133 0.01
1027 90 0.01
1028 106 0.01
1029 101 0.01
1030 95 0.01
1031 122 0.01
1032 122 0.01
1033 128 0.01
1034 164 0.02
1035 312 0.03
1036 97 0.01
1037 105 0.01
1038 95 0.01
1039 95 0.01
1040 83 0.01
1041 72 0.01
1042 95 0.01
1043 73 0.01
1044 56 0.01
1045 106 0.01
1046 35 0.00
1047 42 0.00
1048 142 0.02
1049 52 0.01
1050 71 0.01
1051 44 0.00
1052 47 0.00
1053 98 0.01
1054 110 0.01
1055 50 0.01
1056 40 0.00
1057 69 0.01
1058 29 0.00
1059 53 0.01
1060 43 0.00
1061 89 0.01
1062 48 0.01
1063 130 0.01
1064 65 0.01
1065 62 0.01
1066 32 0.00
1067 51 0.01
1068 47 0.00
1069 15 0.00
1070 38 0.00
1071 72 0.01
1072 25 0.00
1073 11 0.00
1074 17 0.00
1075 20 0.00
1076 21 0.00
1077 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGACCGATCCCCGACTTGCGCATCCCGCC
CCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
Found at i:15650313 original size:26 final size:26
Alignment explanation
Indices: 15650279--15650331 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15650269 GTCGACTTAG
* * *
15650279 GCATCCGAAGTTCATTCTCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
15650305 GCATACGAACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
15650331 G
1 G
15650332 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:15650835 original size:26 final size:26
Alignment explanation
Indices: 15650799--15650851 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15650789 GTTGACTAGG
* *
15650799 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15650825 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15650851 G
1 G
15650852 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15652289 original size:26 final size:26
Alignment explanation
Indices: 15652259--15652311 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15652249 GTTGACTTAG
* * *
15652259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGCCTAA
15652285 GCATACAGAGTTCATTCCAAGCCTAA
1 GCATACAGAGTTCATTCCAAGCCTAA
15652311 G
1 G
15652312 ATCGGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGCCTAA
Found at i:15653178 original size:26 final size:26
Alignment explanation
Indices: 15653142--15653192 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15653132 ATGACTTAGG
*
15653142 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAATCTAAT
15653168 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
15653193 GATCAGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAT
Found at i:15654288 original size:864 final size:870
Alignment explanation
Indices: 15651311--15659282 Score: 7354
Period size: 893 Copynumber: 9.1 Consensus size: 870
15651301 TACCATCCCA
* * * * * * * *
15651311 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCCGCTCATTTCG
1 TCGATCC-CCGCTTGCGCATCCCGCCCCTCTGGCCGAC-T-GAG-C-GCCCGCACGCTCGTTTCG
* * * *
15651376 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G-A-CC--AGA-CCGAG
61 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTATCCAGAGATCAGAG
* ** * * *
15651432 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGTCACT
126 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACC
* * * * * * * * * *
15651497 ATCACTGGAGCATCATCGGAGAACCAGACCGGCGGCATTGGGGTTTCGACAATC-AGAGGGCCGA
191 ATCGCT-GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCG-
*
15651561 GGGGGTATG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
254 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
15651625 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAG
319 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
15651690 TAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
384 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * ** * *
15651755 AGTTT-TTGACTGAATTTTTTTTGTCCATTACAACAAAAATACAAGGATCACATCTACCAAGTTT
449 AGTTTCTAG-CTGAA-TTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTT
* * *
15651819 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTTGAACCGTAAAAAGTTTCAAAAATCTT
512 GGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
* * *
15651884 G-AAAATA-AAAACGGGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATG
576 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
15651947 AATTTACAAGCCATAAAAATGGCTTTGGCACACCGAAATATGAAGATGTGCCTAAACCCACCTAC
641 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
15652012 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
706 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCC
* ** * * *
15652077 CGCTTGTTTAATCGGTTGGCTTAGGCATA-GGAGCTCATTCCCAGTCTAAGATCAGACCGAGA-T
763 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG-GACC
* * * *
15652140 GAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCG
827 AAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGG
* * * * *
15652184 ACTGATCCCCGGCTTACGCATCTCGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCATGG
1 TC-GATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* *
15652249 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGCCTAAGAT
64 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-TCC-AG----AGAT
* * * **
15652314 CGGACCATATCGAGGGTTGCGGTAGCACATGCTGGACTCGGGCCTGTGCTGGTGCCGTATTTTTC
121 -----C--A--GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* * *
15652379 TT--TGCTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGA
177 TTCAT-C-GGGGCACCATCG-CTGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
* * * * * *
15652442 CGATC-AGGGGGCCGGGGGGTGTGCGCACATGATATGCAATGTGTGTTGGTACTTGGCCCTTATA
239 CGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
15652506 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
304 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
15652571 TAGGTTTACTGCCAGTAGCCATTAAAGTGTCTTAAATGGGCACACTTTTTTCAAATGTTCACAAA
369 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
15652636 ATCTTGTACACCTCGAG-TTCTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCA
434 ATCTTGTACACTTCGAGTTTC-TAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCA
* * * *
15652700 TGTCTACCATGTTTGGGG---------C--CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAA
498 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
* * *
15652754 TTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAGTTCTCGTGAAGGCTTAAG
563 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
15652819 GGACCATTGTATCAATTTACAAGCCATAAAAATGGAATTGGCACGA-AAAAATATGAAGATATGC
628 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-ACAGAAATATGAAGATGTGC
* * * *
15652883 CTAAACCCACCTACCACCCTATCAATCAACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTG
692 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G
* * * * *
15652948 CCTGCCCGCCCACTCGTGTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
755 --TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
* * * * * *
15653013 GACCAGACCGAGGGTTGCAGTAGCAAGATC-AGCAGCACGCACAGGGGGACCCAG
818 GACCGGACCAAGGGTTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGA-CCGG
*
15653067 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT-GG
1 TCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
15653131 TATGACTTAGGCATACGGAGTTCATTCCCAGTCTAATCATACGGAGTTCATTCCCAATCTAAGAT
65 T-TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T--C---C--AG--
* *
15653196 CAGACTAGATTGAGGGTTGCTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
117 -AGA-T-CA--GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* * * * * * * * * **
15653261 TTCGTCGGGGCACTATCACCGGAGCATCATCGGAGAACCTAACTGGCGGCATTGGGGTTTCGATG
177 TTCATCGGGGCACCATC-GCTGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
* **
15653326 AT-TGGGGGGTCGGGGGGGTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATAT
241 ATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
**
15653390 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATGCCCTTAAAGAGCATTTGAGATTTTAC
305 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
15653455 AGGTTTGCTGCCAGTAGCCACTAATGTGTCTGAAATGGGGACAATTTTTTCAAATGGCCACAAAA
370 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
15653520 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-AAGGATCACG
435 TCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACG
* *
15653584 TCTACTAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAAATC-CTGAACCTTAAAAAG
500 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTT-AAAAAATCTC-GAACCGTAAAAAG
* * * *
15653648 TTTTACAAATCGTGAAAAATAGAAAACGAGTCATCTGGCCATGAAACTTCACGTGAAGGCTTAAG
563 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * ** *
15653713 GGACTATTGTGTTAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACC
628 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* * * * *
15653778 TAAACCCATCAACCACCTTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGC
693 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * *
15653843 CTGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCGGACCG
758 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG
* ** **
15653908 GACCAAGGGTTGTGGTAGCAGGATCGACAGCACATAGAGGGGGACTCAA
823 GACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGAC-CGG
** ** *
15653957 TCGATCCCCCGCTTGCGCATTTCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGG
1 TCGAT-CCCCGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
15654022 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G-A-CC-G-GATC-GAGGGTT
65 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTATCCAGAGATCAGAGGGTT
* * * *
15654078 TCGGCAGTACATGCTAGGCTCGTGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
130 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
* * ** * *
15654143 CTGGAGCATCATCAGAGAACCTGACCGACAACATTGGGGTTTCGGCAATCGGGGGGGTCGGGGGG
195 CT-GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGG
* * *
15654208 TGTGCGCACATGATGTGTGATGGCTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
15654273 AAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
15654338 ATTAAAGTGTCTAAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
15654403 TTAGCTAAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCA
454 CTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
15654468 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
519 AAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * * *
15654533 AAAAAACGGGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAC
583 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
15654598 AAGCCATAAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
648 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
15654663 TCGATCCACGGCTTGCACATCCCGTCTCTTTTGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTTGT
713 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-----GCCCGCCCGCTCGT
* * * * *
15654728 TTCGTCGGTTGGCTTGGGCATACGAAGCTCATTCCTAGTCTAAGATCAGTCC-GACCTGAGGGTT
770 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACC-AAGGGTT
* * * * *
15654792 GCGATAGCAAGATCGGCAGCACGCAGAGGGCGACCCGA
834 GCGGTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGG
* * * *
15654830 TCGATCCCCGACTTACACATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
** * **
15654895 TTGACTTAGGCATATGGAGTTCATTCCCAGCCTAAGCATATAGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T-CCAG----AGATC
* * *
15654960 AGATTGGACCGAAGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCGCATTTTTCT
122 --A---GA--G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
* * * * * * * *
15655025 TCATTGGGGCACCATCACCGGAGCATCATCGGAGAACCTTACTGATGGCATTGGGGTTCCGACGA
178 TCATCGGGGCACCATC-GCTGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA
* * **
15655090 TCGGGGGGGCCGGGGGGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTCAGCCCTTATAT
242 TCGGGGGGGTC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
15655155 TGGCCCCCTATCCATCGTCAAACCTCTAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTAC
305 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
15655220 AGGTTTGCTGCCAGTAGCCATTAAAATGTCTGATATGGAGACACTTTTTTCAAATGGTCACAAAA
370 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
15655285 TCTTGTACACTTCGAGCTTT-TAGCTGAATTTTTTTGTGCATGCATGCCAA-AAAAATACAAGGA
435 TCTTGTACACTTCGAG-TTTCTAGCTGAA-TTTTTT-TG--TGCATGCCAACAAAAATAGAAGGA
* ** * *
15655348 TCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAATTTTTTAAAA---CGAACTGCAAA
495 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAA
* *** * ** * **
15655410 GGAGTTTC----A-CCCCAAAGAA-CG-ATGCAAG-CG---TG-CATCGAATTTTCAC-TG--GG
560 -AAGTTTCAAAAATCGTGAAA-AATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTGAAGG
* * * **** *
15655460 -TT-A--GACCATCTGTATGAATTCT-CATTA-CCA-ATGAATTTG-A-TGGCTTTGAAAAATAT
622 CTTAAGGGACCAT-TGTATGAATT-TACA--AGCCATA-AAAATGGCATTGGCACACAGAAATAT
** * * * * *
15655516 -AAG-TGT-CCTAAACCTTCATGA-CACCCTAT-G-GCCA-----TG-GCA---AG--ACGCT-G
682 GAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *** * * * *
15655563 TC-GC-TAAT---C-CCAATTC-TTTCGTTGATTAGGGTTAGGCATAAGGAA-TTCATTTCCCAG
746 CCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTT-GGCTTAGGCAT-ACGAAGTTCA-TTCCCAG
* ** ** ** * * * * *
15655620 TCTCAGCACTTGGA-TTG-CCATTAATG-TGACGGATA-CTGGATC-ACAACATGCCGAGGGGAA
808 TCTAAG-A-TCAGACCGGACCA--AGGGTTG-CGG-TAGCAGGATCGACAGCACGCAGAGGGGGA
15655680 CC--
867 CCGG
* * * **
15655682 TCCGATCCCCGCTTACGCAT--C-ACCC-CTAG-C-AC-GA-CGATCGCACTGCTC--TTCGTGG
1 T-CGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC-GCTCGTTTCGTGG
* *
15655737 GTTGACTTAGCCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
64 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T-CCAG----AGAT
* *
15655802 CAGACCAGACCAAGGGTTGCGGCAGCAAATGCTGGGCTGGGGCATGTGCTGGTGCCACATTTTTC
121 -----CAG----AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
** * * * * * *
15655867 TTTGTTGGGGCACCATCATCTGAGCATCGCCGGAGAACTTGACCGACGGCATTTGGGTTCCGGTG
177 TTCATCGGGGCACCATC-GCTGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
* * * * * **
15655932 ATCGGGAGGCT-TGCGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCTGTTATATT
241 ATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
15655996 GGCCCCTTATCCTTCATCAAACCTTGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACA
306 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
15656061 GGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
371 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
15656126 CTTGTACACTTCGAGTTTCTACCTGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATCACGT
436 CTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGT
* * *
15656191 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTTAAAAATCTCGAACCATAAAAAGTT
501 CTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
*
15656256 TCAAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
565 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
15656321 ACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTA
630 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* * * ***
15656386 AACCCACCTACCACCCTATCGATCCACGACTTGCGCTTCCC-AC-CTCTGG--TTAGTA-TGCCC
695 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* *
15656446 G--C-TTC--TTCGTC----GG-TT--GCA-A-GAA-TTCATTGCCCAGAGT-TAAGCT-AGAAC
760 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT-CCC--AGTCTAAGATCAG-AC
****** * * * * * *
15656494 TATCTTGAGTGACCACCCAAAAGAGG-ATG--GAATCGATAGGATG-GGAGGGGGACCTGG
821 ---C----G-GACCA-AGGGTTGCGGTA-GCAGGATCGACAGCACGCAGAGGGGGACC-GG
* * * * * * * *
15656551 -CTGAT--CC-ATTGCGCATCAC-ACCCTCTAGCCAACTGA-CGCCCATCATGCTCGTTCACGT-
1 TC-GATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC-GCACGCTCGTT-TCGTG
* * *
15656609 --TTGACTTAGCCAGCATA-TG-GTTATGAATTCCCA-T-TAAGC-T-CGAAGTTCATCCCAGCA
63 GGTTGACTTAG---GCATACAGAG-T-T-CATTCCCAGTCTAAGCATACGGAG-T-AT-CCAG--
* ** ** * * *
15656666 AGAT-GGATGCGGAAAGCGGTTGCGACTATGCTGAGCCACTTGCGGTTTGGCATGT-TTAGTGCC
117 AGATCAGA-G-GG-TTGCGGCAGC-AC-ATGCTG-G--GC-T-C-G---GGCATGTGCTGGTGCC
* * * *
15656729 A-ATTTTTCTATCAGTTCTGAGGGGC-CCAT-GTCTG-GCATGA-CGAAGAACTTGATC-A-GCG
168 ACATTTTTCT-TCA--TC---GGGGCACCATCG-CTGAGCATCACCGGAGAACCTGACCGACG-G
* ** * * *
15656787 CAAAT-GGG-TCC--AAATC--GGGGAT---GGGGTGTGCTGCAAAT-ATGTGCCCGATGTTGTG
225 C-ATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGTGTGC-GCACATGATGTG--CGATG-GGTG
** * *
15656842 CTGGTACTTGGCTGTTATATTGGCCCCTTATCCCTCATAAAACCTCGAGAACTCACACCCCCTTA
285 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
15656907 AAGAACATTTGAGATTTTACATGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACT
350 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
15656972 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTACCTGAATTTTTTTGTGCATGCCA
415 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCA
* *
15657037 ACAAAAAGAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTTAAAA
480 ACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAA
* *
15657102 ATC-CTGAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
545 ATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
15657166 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCTTTGGCACAC
609 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * *
15657231 AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCATC
674 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
15657296 TCTCTGGTCGGCGTAGTGCCCACCCGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAA-TTCATT
739 TCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAAGTTCATT
* *** * * * * *
15657360 CCCAGTCTAAGATCAGACTGGATTGAGGGTTTCGGTAGCAGGATCAACAGCATGCGGAAGGGGAC
803 CCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGAC
15657425 CTGG
868 C-GG
* * * * **
15657429 CCTATCCCCGGCTTGCGCATCACACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTATGGG
1 TCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
*
15657494 TTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACAT
65 TTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T-CCAG----AGAT
* ** * *
15657558 CAAACCAGACCAAGGGTTGTGATAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCACATTTTTC
121 -----CAG----AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* * * * * * **
15657623 TTC-GCTGGGGCACCATCGTCTGAGCATCGCCAGAGAACTTGA-CTAGCAGCATTGGGGTTCCAA
177 TTCATC-GGGGCACCATCG-CTGAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGG
* ** * ** * * * * *
15657686 TGAATCGATGGTG-CATTGGGGTCTGCTCACATGATGTGCAATGGGTGCTGGTACATGGCTCTTA
239 CG-ATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
15657750 TATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
302 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
15657815 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACA
367 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
15657880 AAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAAAGAAGGAT
432 AAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATAGAAGGAT
* *
15657945 CACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAA
496 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGT-AA
* * * *
15658009 AAAGTTTCGAACATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACT
559 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
15658074 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACTTTGGCACACAGAAATATGAAGATG
624 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * * * * *
15658139 TGCCTAACCCCACCTACCACCCTATCGATCCACGGCTTGTGCTTCCCATCTCTCTGGTCGACGTA
689 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
*
15658204 GTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAA-TTCATTCCCAGTCTAAGATCA
754 GTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCA
* *** * * * *
15658268 GACTGGATTGAGGGTTGTGGTAGCAGGATCGGCAGCATGCGGAGGGGGACCTGG
818 GACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC-GG
* * * * * * * *
15658322 CCGATCCCCGACTTACGCATCACACCCCTCTGGCCGACTGAGCCCCCGCATGCCCATTTCGTGGG
1 TCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
15658387 TTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
65 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T-CCAG----AGA-T
* * * *
15658452 GGACCGGACCAAGGGTTGCGACAGCAC--GCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCC
121 ----C--A--GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
* * * * * *
15658515 TCGTTGGGGCACCATCGTCTGAGCA-CGCCGGAGAACTTGACC-AGCGGCATTGTGGTTCCGGTG
178 TCATCGGGGCACCATCG-CTGAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCG
* * * * *
15658578 ATCGGAGGGCT-TGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATT
241 ATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * * *
15658642 GGCCCCTTATACCTCATCGAACCTTGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACA
306 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
15658707 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAAT
371 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
15658771 CTTGTACACTTCAAGTTTCTAGCTGAATTTTTTTATGCATGCCAACAAAAATAGAATGATCACGT
436 CTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGT
*
15658836 -TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAATT
501 CTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
** *
15658900 TTGAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
565 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* ** * *
15658965 ACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAACATGTGTCTA
630 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* *
15659030 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTACTATCC
695 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--GT--
*
15659095 GCCCGCCCGGC-CGCTTGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
756 GCCCGCCC-GCTCG-TT--TC-----GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTA
* * * ** * *
15659159 AGATCAGATCGGACCAAGGGTTGCGGCAGTAGGATCGGGAGCACGCAGAGGGGGATTCGA
812 AGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGG
* * * *
15659219 TTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAGGCTCGTTTCGTGG
1 TCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
15659283 CTCGTTTCGG
Statistics
Matches: 5973, Mismatches: 741, Indels: 746
0.80 0.10 0.10
Matches are distributed among these distances:
836 10 0.00
837 46 0.01
838 16 0.00
839 9 0.00
840 192 0.03
841 8 0.00
843 172 0.03
844 10 0.00
845 11 0.00
846 7 0.00
847 4 0.00
848 5 0.00
849 3 0.00
850 11 0.00
851 5 0.00
852 18 0.00
853 26 0.00
854 21 0.00
855 26 0.00
856 25 0.00
857 19 0.00
858 5 0.00
859 9 0.00
860 30 0.01
861 11 0.00
862 9 0.00
863 10 0.00
864 333 0.06
865 248 0.04
866 239 0.04
867 256 0.04
868 30 0.01
869 8 0.00
870 76 0.01
871 56 0.01
872 43 0.01
873 194 0.03
874 50 0.01
875 14 0.00
876 16 0.00
877 13 0.00
878 15 0.00
879 7 0.00
880 11 0.00
881 67 0.01
882 332 0.06
883 306 0.05
884 64 0.01
885 433 0.07
886 61 0.01
887 74 0.01
888 163 0.03
889 27 0.00
890 220 0.04
891 267 0.04
892 59 0.01
893 471 0.08
894 206 0.03
895 68 0.01
896 298 0.05
897 139 0.02
898 3 0.00
899 106 0.02
900 9 0.00
901 194 0.03
902 8 0.00
903 15 0.00
904 46 0.01
905 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (870 bp):
TCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTATCCAGAGATCAGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGC
TGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGA
TCGACAGCACGCAGAGGGGGACCGG
Found at i:15654934 original size:26 final size:26
Alignment explanation
Indices: 15654904--15654956 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15654894 GTTGACTTAG
*
15654904 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATATAGAGTTCATTCCCAGCCTAA
*
15654930 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGCCTAA
15654956 G
1 G
15654957 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGCCTAA
Found at i:15657540 original size:26 final size:26
Alignment explanation
Indices: 15657503--15657554 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15657493 GTTGACTTAG
15657503 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15657529 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15657555 CATCAAACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15658425 original size:26 final size:26
Alignment explanation
Indices: 15658396--15658448 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15658386 GTTGACTTAG
15658396 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
15658422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15658448 G
1 G
15658449 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:15661588 original size:26 final size:26
Alignment explanation
Indices: 15661552--15661604 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15661542 GTTGACATAG
15661552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15661578 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15661604 G
1 G
15661605 ATCGAAGTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15661723 original size:732 final size:733
Alignment explanation
Indices: 15660301--15661770 Score: 2245
Period size: 732 Copynumber: 2.0 Consensus size: 733
15660291 CAAAATCTTG
*
15660301 TACACTTTGAGTTTTTAGCTGATTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTATAC
1 TACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTATAC
* ** *
15660366 CAAGTTTGGGGCCAAAACTCCTTTTAAAAAATTTAAAAAAAATCTCGAATCGCAAAAAGTTTCTA
66 CAAGTTTGGGGCCAAAACCCCTTCGAAAAAATTTAAAAAAAATCTCGAATCGCAAAAAGTTTCAA
15660431 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
131 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
15660496 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAGATATGCCTAAACC
196 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAGATATGCCTAAACC
* *
15660561 CACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC
261 CACCAACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTA-----CG-CC
*
15660626 GCCTGCCCGCCAGCTCATTTTGTCGGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATC
320 GCCTGCCCGCCAGCTCATTTTGTCGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAGATC
* * * * *
15660691 AGATCGAACTGAGGGTTGTAGCGATAGGATCGTCAGCATGCAGAGGGGGACCCGATCGATCCTCG
385 AGATCGAACTGAGGGTTGCAGCGACAGGATAGTCAGCACGCAGAGGAGGACCCGATCGATCCTCG
* * * * *
15660756 GCTTGCGCATCCCGCCCCTTTGGCTGGCTGAGCGCCCGTACGCTCGATTTGTGGGTTGACTTAGG
450 GCTTGCACATCCCGCCCCTTTGGCCGACTGAACGCCCGTACGCTCGATTTGTGGGTTGACATAGG
*
15660821 CATACGAAGTTCATTCCCAGTCGAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
515 CATACGAAGTTCATTCCCAGTCGAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC
* ***
15660886 GAGGGTTGCGGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGC
580 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGC
** * * * * * *
15660951 ACAATCGCTGGAGAATCGTCGGAGAACCTAACCGACGGCATTGAGGTTCCGACGATTGAGGGGGT
645 ACAATCAATGAAAAATCATCGGAGAACCTAACCAACGGCATTGAGGTTCCGACGATCG-GGGGGC
15661016 CAAGGGGGTGTGCGCACATGATGTT
709 CAAGGGGGTGTGCGCACATGATGTT
* * * *
15661041 TACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGGCAAAAAAAATACAAGGATGACGTCTAC
1 TACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTATAC
* *
15661106 CAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTT-TAAAAATTCTCGAA-CAGCAAAAAGTTTC
66 CAAGTTTGGGGCCAAAACCCCTT-CGAAAAAATTTAAAAAAAATCTCGAATC-GCAAAAAGTTTC
* * *
15661169 AAAAATGGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTC
129 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
15661234 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCCTAAA
194 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAGATATGCCTAAA
*
15661299 CCCACCAACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCGACGTA-G-CGCCT
259 CCCACCAACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTACGCCGCCT
* *
15661362 GCCCGCCCGCTCGTTTTGTCGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCAGA-
324 GCCCGCCAGCTCATTTTGTCGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCAGAT
* *
15661426 CTGGACTGAGGGTTGCGGC-AGCAGGATTAGT-AGCACGCAGAGGAGGACCCGATCGATCCTCGG
389 C-GAACTGAGGGTTGCAGCGA-CAGGA-TAGTCAGCACGCAGAGGAGGACCCGATCGATCCTCGG
*
15661489 CTTGCACATCCCGCTCCTTTGGCCGACTGAACGCCCGCT-CGCTCGATTTGTGGGTTGACATAGG
451 CTTGCACATCCCGCCCCTTTGGCCGACTGAACGCCCG-TACGCTCGATTTGTGGGTTGACATAGG
* * ***
15661553 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAAGTGGACC
515 CATACGAAGTTCATTCCCAGTCGAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC
*
15661618 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
580 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGC
* * *
15661683 ACAATCAATGAAAAATCATCGGAGAACCTGACCAACGGCATTGGGGTTCTGACGATCGGGGGGCC
645 ACAATCAATGAAAAATCATCGGAGAACCTAACCAACGGCATTGAGGTTCCGACGATCGGGGGGCC
**
15661748 GGGGGGGTGTGCGCACATGATGT
710 AAGGGGGTGTGCGCACATGATGT
15661771 GCGATGGGTA
Statistics
Matches: 666, Mismatches: 58, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
731 29 0.04
732 337 0.51
733 4 0.01
734 1 0.00
739 1 0.00
740 285 0.43
741 9 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (733 bp):
TACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTATAC
CAAGTTTGGGGCCAAAACCCCTTCGAAAAAATTTAAAAAAAATCTCGAATCGCAAAAAGTTTCAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAGATATGCCTAAACC
CACCAACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTACGCCGCCTGC
CCGCCAGCTCATTTTGTCGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCAGATCG
AACTGAGGGTTGCAGCGACAGGATAGTCAGCACGCAGAGGAGGACCCGATCGATCCTCGGCTTGC
ACATCCCGCCCCTTTGGCCGACTGAACGCCCGTACGCTCGATTTGTGGGTTGACATAGGCATACG
AAGTTCATTCCCAGTCGAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACAATC
AATGAAAAATCATCGGAGAACCTAACCAACGGCATTGAGGTTCCGACGATCGGGGGGCCAAGGGG
GTGTGCGCACATGATGTT
Found at i:15662436 original size:26 final size:26
Alignment explanation
Indices: 15662400--15662451 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15662390 GTGGGTTGAC
15662400 TTAGGCATACGGAATTCATTCCTAGT
1 TTAGGCATACGGAATTCATTCCTAGT
*
15662426 TTAGGCATACGGAGTTCATTCCTAGT
1 TTAGGCATACGGAATTCATTCCTAGT
15662452 CTAAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (26 bp):
TTAGGCATACGGAATTCATTCCTAGT
Found at i:15663754 original size:26 final size:26
Alignment explanation
Indices: 15663725--15663774 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15663715 GACTTAGGCA
*
15663725 TACGGAGTTCATTCCTAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
15663751 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15663775 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:15665350 original size:281 final size:280
Alignment explanation
Indices: 15664803--15665350 Score: 862
Period size: 281 Copynumber: 2.0 Consensus size: 280
15664793 GGGCGGGTCA
*
15664803 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCC
* * *
15664868 ACGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTACAGGTTTGCCACCAGT
66 ACATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTACAGGTTTGCCACCAGT
*
15664933 AGTCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGA
* * * * * * * *
15664998 GTTCTTAGCTGATTTGTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGG
196 GTTCTTAGCTGAATTATTTTGGGCATACCAAAAAAAATACAAGGATCACGTATACCAAGTTCGGA
15665063 GCCAAAACTTCTTCTGACCG
261 GCCAAAACTTCTTCTGACCG
*
15665083 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCC
* * **
15665148 TCATCAAACCTTGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 ACATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGA-TTTACAGGTTTGCCACCAG
* * *
15665213 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
130 TAGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCG
* * * *
15665278 AGTTTTTAGCTTAATTATTTTGGGCATGCCAAAAAAAATACAAGGATCATGTATACCAAGTTCGG
195 AGTTCTTAGCTGAATTATTTTGGGCATACCAAAAAAAATACAAGGATCACGTATACCAAGTTCGG
15665343 AGCCAAAA
260 AGCCAAAA
15665351 ACCCTTCCGA
Statistics
Matches: 242, Mismatches: 25, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
280 103 0.43
281 139 0.57
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (280 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCC
ACATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTACAGGTTTGCCACCAGT
AGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGA
GTTCTTAGCTGAATTATTTTGGGCATACCAAAAAAAATACAAGGATCACGTATACCAAGTTCGGA
GCCAAAACTTCTTCTGACCG
Found at i:15666253 original size:24 final size:24
Alignment explanation
Indices: 15666223--15666276 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
15666213 TTTGGGGTAG
*
15666223 AAAATCTTTCTGAAAAAATTTTAA
1 AAAATCTTTCTGAAAAAAGTTTAA
15666247 AAAATCTTTCTGAAAAAAGTTTAA
1 AAAATCTTTCTGAAAAAAGTTTAA
15666271 AAAATC
1 AAAATC
15666277 ATGAAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.52, C:0.09, G:0.06, T:0.33
Consensus pattern (24 bp):
AAAATCTTTCTGAAAAAAGTTTAA
Found at i:15666690 original size:26 final size:26
Alignment explanation
Indices: 15666660--15666712 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15666650 GTTGACTTAG
15666660 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15666686 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15666712 G
1 G
15666713 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15667543 original size:905 final size:898
Alignment explanation
Indices: 15665784--15673088 Score: 9184
Period size: 895 Copynumber: 8.2 Consensus size: 898
15665774 GTTGACTTAG
* * * * * *
15665784 GCATACGGAGTTCATTGCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGTCAGCACATGCTGGG
* * * *
15665849 TTCGGGCTTGTGCTGGTGCTGCATTATTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15665914 ACCTGACAGGCGGTATTGGGGTTCCGGCGATC-GGGGGGCCGGGCGGTGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGT
* *
15665978 ACAATGGGTGCTGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTC
195 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTC
* * *
15666043 ACACCCCTTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15666108 ATAAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
15666173 TGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAGAAAATCTTTCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAA
** * * *
15666238 AAATTTTAAAAAATCT--TTCTGAAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
15666301 TTTCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15666366 CATTGGCACACAGAAATATGAAGATGTACTTAAACCACCTACCACCCTATCGATCCACGGCTTGC
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGC
* * **
15666431 GCATCCCATCTCTCTGGCCGACGTAGTGCCTGCCCGTCCACCCGCCTGCTCGTTTCCTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCC--CCCG----CCCGCCCGCTCGTTTTGTCGGTTGG
* * * *
15666496 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGTAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * *
15666561 CAGCAGCACG-TTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGTT
773 CGGCAGCACGCTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
15666625 GAGCGCTCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
15666686 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTACGTCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGTCAGCACATGCTGGG
* *
15666751 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15666816 ACCTGACAGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGT
* *
15666881 GCAATGGGTGCTGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAATTC
195 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTC
* *
15666946 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
15667011 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15667076 TATGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTAAAAAATCCTTCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAA
* * * *
15667141 AAAGTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
15667206 TTTCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15667271 CATTGGCACACGGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGC
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGC
*
15667336 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTACCCGCCCACCCGCCTACTCGTTTTGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCC--CCCGCCCGCCCG----CTCGTTTTGTCGGTTGG
* * * *
15667401 CTAAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * *
15667466 CGGCAGCATGCT-GAGGGGGACCCGATCGATCCCCGACTTAG-GCATCCCGCCCCTTTGGCCGGC
773 CGGCAGCACGCTAGAGGGGGACCCGATCGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCCGGC
* *
15667529 TAAGCGCCCGCACACTCGTTTCATTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
15667591 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGACCGTGGGTTACGTTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGTCAGCACATGCTGGG
** * * * *
15667656 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGTAGAGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
15667721 ACCTAACCGGCGGCATTGGGGTTCCGATGAT-TGGGGGGCCCGGGGGGTGTGCGCACAGGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
15667785 CGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCAC
* * *
15667850 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTC-GTAGCCATTTAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
15667914 GGGGACGCTTATTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTGTAGCTGAATTTTTTTG
326 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15667979 TGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAACA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAAA
* * ** * *
15668044 ATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
456 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
15668109 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15668174 TTGGCACACAGAAATATGAAGATGTGCCTAATCCTACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTGCG
** * *
15668239 CATCCCGTCTCTCTGGCCGGTGTAGT------GCCCGCCCGCTCATTTTGTCCGTTGGCTTAGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGC
* * * * * * *
15668298 ATACGGAGTTCATTCTCAGTCTAAGATAAGATC-GAACCAAGGGTTACAGCAACAGGATCGGCAG
715 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAG
* ** * * * *** *
15668362 CACG-TAAAGGGGGACCCGA-CGAATCGTCGACCTGTGCATCCCGCCCCTCTCATCTGCTGAGCG
779 CACGCTAGAGGGGGACCCGATCG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * * * *
15668425 CGCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAA
843 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * ** *
15668481 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACAGGATCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGTCAGCACATGCTGGG
* * * * * * * *
15668546 CTCGGGCATGAGCTAGTACCGTATTTTTCTTCGTCGGGGCACGATCGCTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *** ** * *
15668611 ACCTGATCGATAGCATTGGGGTT-TTAGCGATCGGGGTGGTCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
15668675 GCGATGGGTGC----A---GG------T-TT-G------------------A----G--AACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCA
* *
15668701 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAT
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15668766 TGGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
325 T-AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
15668831 TGTACATACCAATAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCT-GAA
* *
15668895 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
15668960 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
15669025 GCATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGACTT
583 GCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTT
* * * * *
15669090 GCGGAGCTCGTCTCTCTGGCCGGCGTAGTG--CCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTCA
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
* * * * * *
15669153 GGCATACAGAATTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAAGATCAG
712 GGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
** * * * *
15669217 CAGCACGC-AGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCGTTTGGCCGACTGAG
776 CAGCACGCTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
15669281 TGCCCGCGCGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 CGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
15669339 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC-GTCAGCACATGCTGG
* * * *
15669403 GCTCGAGCATGTGCTGGTG-TCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTGTCGGA
65 GCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * *
15669467 GAACTTGACCGACGGCATTGTGGTTCCGGCGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
15669532 TGCGATGGGTGCTGGTTCTTGGCCCTTATATTAGG-CCGCTATCCCTCATCAAACCTCGAGAACT
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGACAACT
* * *
15669596 CACACCCTCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
15669661 AATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
323 AATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--ATTT
* * *
15669726 TTTTGTGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTG
* * *
15669791 AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATACAAAACGACTC
451 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
15669856 GTCCTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAGGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * *
15669921 TGGCATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACGCTATTGATCCACGAC
581 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGC
* *
15669986 TTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCCCCCTCGTTTAG
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCG--C--CCGCCCG----CTCGTTTTG
* * * * *
15670051 TCAGTTGGCTTAGGCATCCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGC
700 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
** * * * * * *
15670116 AGCAGGATCGATAGCAC-ATAGAGGGGGACCTGGTCGATCTCCGGCTTGCGCATCACGCCTCTCT
765 AGCAGGATCGGCAGCACGCTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
15670180 GGCCGGCTAAGTGCCCGCA-AGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCATTCCCA
830 GGCCGGCTGAGCGCCCGCACA-CTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCCA
15670243 GTCTAA
893 GTCTAA
* * **
15670249 GCCTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTTTGGT-AGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-TTACGTCAGCACATGCTGG
*** ** * * *
15670313 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGGCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
15670378 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGTGGACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
15670443 GCGATGGGTGCTGGTACTTGGCACTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGC-ACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-CAACTC
15670507 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-A
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15670571 ATTGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
324 ATAGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
15670636 TTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCAAACACTCCTTCTGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAA
* *
15670701 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
453 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * *
15670766 CCTGCCATGAAACTTGACGTGAACGCTTAAGGGACGATTGTATGAATTTACAAGCCACAAAAAT-
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
15670830 GCTATTGGCATGCAAAAATATGAAGATGTACCTAAACACACCTACCACCCTATCGATCCACGGCT
583 GC-ATTGGCACACAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACGGCT
* * * *
15670895 TGCGCATCCCGTCTCTCTGGCC-AGCATAGTG--CCCGCCCGTCCGATCGTTTCT-TTGGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCCCGCCCGCCCGCTCGTTT-TGTCGGTTGGC
* ** * *
15670956 TTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCGAGCGTTGCGGTAGCAGGAT
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGAT
* * * *
15671020 CGGCAGCACAC-AGAGGGGGACCC-AGTCGATCCTCGGCTTGTGCATCCCGCCCTTCT-GCCGGC
773 CGGCAGCACGCTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15671082 TGAGCGCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * **
15671144 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGT-AGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-ACGTCAGCACATGCTGG
* ** ** * * *
15671208 GCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCACCGACGCACCATCTCCGGAGCATCATTGGAG
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * ** * * * * *
15671273 AACCTGACCGACGGTATTGGGGTTCCGGTGACCGGGTGGGCTGGGGGGGTGTGCGCCCATGATTT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
15671338 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCA
* **
15671403 CACCCCCTTCAAGAGCATTTGAGATTTTACATATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15671468 TAGGGACACTTTTTTCAAATGATTACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
325 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
15671533 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAA
* * * * ** *
15671598 AATTTT-AAAAATCTGGAATCGTAAAAAGTTTTAAAAATTGTGAAAATTAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
15671662 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
15671727 ATTGGCATGCAGAAATATGATGATGTGACTAAACCCACCTACCACCCTATCGATCCATGACTTGC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** *
15671792 GCATCCCGTCTTTCTGGCCGGCGTAGTG--CCCACCCGCCCGCTCGTTTCATCGGTTGGCTCAGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
* ** * * *
15671855 CATACGGAGTTCATT-CCATGTCTAGGATGGGACCAGACCAAGGGTTGCAGCAGCAGGATCAGCA
714 CATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *** *
15671919 GCACG-TAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCAATTGAGCA
778 GCACGCTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
15671983 CCTGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
15672039 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGTCAGCACATGCTGGG
** ** * *
15672104 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15672169 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGTACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * *
15672234 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCG
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCA
* * *
15672299 TA-CCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAACTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
15672363 TAGGGGCAGTTTTTTC-AATCGGTCACAAAATCTTGTACGCTTCGAATTTTTTGCTGAATTTTTT
325 TAGGGACACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
15672427 TATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAA
* * * *
15672492 AAATTTTAAAAAATTTCGAACCGTAAACAGGTTTGAAAAATCATGAAAAATTAGGAAAACGAGTC
454 AAATTTTAAAAAATCTCGAACCGCAAA-AAGTTTCAAAAATCATGAAAAA-TA-GAAAACGAGTC
15672557 GTCTTGCCAT-AAACTTCACGTTGAAGGCTTAAGGGACCATTGTAGATTGAAATTTACAAGCCAT
516 GTCTTGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTGT--A-TG-AATTTACAAGCCAT
* **
15672621 AAAAAT-GCATTGGCACACAGAAAAATGAAAGACATGCCTAAACCACCTACCACCCTATCGATCC
576 AAAAATGGCATTGGCACACAGAAATATG-AAGATGTGCCTAAACCACCTACCACCCTATCGATCC
* * *
15672685 ACGGCTTGCGCATCCCGTCTCTCTAGCC-AGCGTAGTGCTTGCCCGCCCGCCTGCCTTCTCGTTT
640 ACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGC--CCCCGCCCG-C--CC-GCTCGTTT
* * * * ** * * *
15672749 CGTCGGTTGGCTTAGGCATTAGGGAGTTCATTGCAAGTCTAAGATTGGACCAAATCAAGGGTTGC
698 TGTCGGTTGGCTTAGGCA-TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * * * *
15672814 GGTAGCAAGATTGGCAGCACG-TAGAGAGGGACCCGA-CTGATCCCCGACTTTCACATCCCGCCC
762 GGCAGCAGGATCGGCAGCACGCTAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCC
* * * * *
15672877 CTCTGGCCGACTGAGCGCACGCACGA-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTC
826 CTCTGGCCGGCTGAGCGCCCGCAC-ACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
15672941 CCAGTCTAA
890 CCAGTCTAA
* * * ** * *
15672950 ACATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTACGGT-AGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC-GTCAGCACATGCTGG
* * * * * *
15673014 GCTCAGGCATGTGCTAGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATGGGAG
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
*
15673079 AACGTGACCG
130 AACCTGACCG
15673089 ACACTGTGTA
Statistics
Matches: 5611, Mismatches: 648, Indels: 279
0.86 0.10 0.04
Matches are distributed among these distances:
852 46 0.01
853 21 0.00
854 316 0.06
855 2 0.00
857 2 0.00
858 342 0.06
859 4 0.00
865 2 0.00
871 1 0.00
872 2 0.00
874 1 0.00
876 1 0.00
877 2 0.00
878 1 0.00
884 2 0.00
887 1 0.00
889 6 0.00
890 294 0.05
891 39 0.01
893 3 0.00
894 323 0.06
895 850 0.15
896 271 0.05
897 84 0.01
898 282 0.05
899 43 0.01
900 6 0.00
901 296 0.05
902 368 0.07
903 348 0.06
904 18 0.00
905 539 0.10
906 16 0.00
907 5 0.00
908 262 0.05
909 11 0.00
910 527 0.09
911 271 0.05
912 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGTCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
CGCTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15667596 original size:26 final size:26
Alignment explanation
Indices: 15667565--15667617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15667555 GTTGACTTAG
15667565 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15667591 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15667617 G
1 G
15667618 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15668484 original size:26 final size:26
Alignment explanation
Indices: 15668455--15668507 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15668445 GTTGACTTAG
*
15668455 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
*
15668481 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
15668507 G
1 G
15668508 ATTGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:15669343 original size:26 final size:26
Alignment explanation
Indices: 15669313--15669365 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15669303 GTTGACTTAG
15669313 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15669339 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15669365 G
1 G
15669366 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15670260 original size:26 final size:26
Alignment explanation
Indices: 15670226--15670275 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15670216 GACTTAGGCA
15670226 TACGAAGTTCATTCCCAGTCTAAGCC
1 TACGAAGTTCATTCCCAGTCTAAGCC
*
15670252 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
15670276 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCC
Found at i:15671154 original size:26 final size:26
Alignment explanation
Indices: 15671118--15671170 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15671108 GTTGACTTAG
15671118 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15671144 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15671170 G
1 G
15671171 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15672043 original size:26 final size:26
Alignment explanation
Indices: 15672013--15672065 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15672003 GTTGACTTAG
15672013 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15672039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15672065 G
1 G
15672066 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15672961 original size:26 final size:26
Alignment explanation
Indices: 15672925--15672975 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15672915 TTGACTTAGG
*
15672925 CATACGGAGTTAATTCCCAGTCTAAA
1 CATACAGAGTTAATTCCCAGTCTAAA
*
15672951 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTAATTCCCAGTCTAA
15672976 GATCAGACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTAATTCCCAGTCTAAA
Found at i:15673540 original size:26 final size:26
Alignment explanation
Indices: 15673488--15673540 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15673478 TTTGACTTAG
*
15673488 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
15673514 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15673540 G
1 G
15673541 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15674419 original size:26 final size:26
Alignment explanation
Indices: 15674389--15674438 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15674379 GTTGACTTAG
15674389 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15674415 GCATATGGAGTTCCTTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
15674439 TAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15675657 original size:869 final size:867
Alignment explanation
Indices: 15674415--15677712 Score: 4303
Period size: 894 Copynumber: 3.8 Consensus size: 867
15674405 CCCAGTCTAA
* * ** * * *
15674415 GCATATGGAGTTCCTTCCCAGTCTTAGATCGGACCAA-ACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTTTCAGTCTAAGATCGGATCAAGACCGACGGTTGCGGCAGCACATGCT-G
* *
15674479 GCTCGGGCATGTGCTGGTGCCACATTTTTC-T--TC---G-----T--T-AGAGCATCGTC-GAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAG
* * *
15674529 AACCTGACCGGCGGCATTGGGGTTTCGACGATCAGAGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
15674594 GCGATGGGGGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATAAAACCTCTAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15674659 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGCCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15674724 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCTTAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15674789 GTGCATGCC-ACAAAAAATA-ATAGGACCACGTCTACCAAGTTTAGGGCCAAAACTCCTCCCGAA
390 ATGCATGCCAAC-AAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
15674852 AAAAGTTTAAAAAATCTCAAACTACAAAAAGTTTAAAAAATCGTAAAAAATAGAAAACGAGTCAT
453 AAAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGT
*
15674917 CTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
15674982 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
15675047 GCGCATCCCGTCCCTCTGGCCGGCGTAGTGCTTGCGCGCCCGCTCGTTTCGTTGGTTGGCTTAGG
648 GCGCATCCCGTCCCTCTGGCCGGCGTAGTGC--GC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** ** * * * *
15675112 CATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTACGGCAGCAGGATCAATAG
710 CATATGGAGTTCATTCCCAGTCTAAGATCAGACTCGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * ** *
15675177 CACGCATAGGGGGACCCGACCGATCCCCGACTTGCGCATCTAGCCCCTCTGGCCGGTTGAGTGCC
775 CACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCC
* *
15675242 CGCACGCCCGTTTCGCGGGTTGACTTAG
840 CGCACACTCGTTTCGCGGGTTGACTTAG
* *
15675270 GCATACAGAGTTCATTTTCAGTCTAAGATCGGATC-AGACCGACGGTTGCAGCAGCACATGCTAG
1 GCATACGGAGTTCATTTTCAGTCTAAGATCGGATCAAGACCGACGGTTGCGGCAGCACATGCT-G
* * *
15675334 GCTCGGGCAAGTGCTGGTGCCGCTTTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAG
* ** * * * **
15675399 AACCTGACCGGTGGGATTGAGGTTTCGATGATCGGGGGGGCC-AGGGGGTGTGCTTACATGATGT
130 AACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
15675463 GCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCCT-TCCCTCATCAAACCTCGAGAACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTC
15675527 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15675592 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
15675657 TATGGATGCCAATAAAAATAGAAGGATCACCTCTACCAAGTTTGGGGCCACAACTCCTTCCGAAA
389 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
15675722 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAGCGAGTCGTC
454 AAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTC
*
15675787 TTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
15675852 CATTGGCATGCA-AAATATGAAAATGTGACTAAACCCACCTACCACCCTATCAATCCATGACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15675916 CGCATCCCGTCTCTCTGGCCAGCGTAGTGC-CCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGG
649 CGCATCCCGTCCCTCTGGCCGGCGTAGTGCGCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGG
* *
15675980 CATATGGAGTTCATTCCCAGTCTAATATCAGA-TCGAGCCGAGGGTTGCGACAGCAGGATTGATA
710 CATATGGAGTTCATTCCCAGTCTAAGATCAGACTCGA-CCGAGGGTTGCGACAGCAGGATCGATA
** *
15676044 GCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
774 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGC
* * *
15676109 CCGCACACTTGTTTCTCTGGTTGACTTAG
839 CCGCACACTCGTTTCGCGGGTTGACTTAG
* *
15676138 GCATACGGAGTTTATTCTCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGAC
1 GCATACGGAGTTCATTTTCAGTCTAAG-AT-C-G-G---------A-TC--A-A--G-ACC-GA-
* **
15676203 CAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTAACATTTTTCTTCATCGGGG
44 C---GGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
* * * ** * *
15676268 CACCATCGCCAGAGCATCACCAGAGAACCTGACTAGCGACATTGGGGTTCCGATGATCGGGGGGG
105 CACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGG
* * * * *
15676333 CCGGGGGGGTGTTCGCACATGATGTTCGGTGGTTGTTGGTACTTGGCCCTTATATT-GCCCCCTA
170 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
15676397 TCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAAATTTTACAGGTTTGCTG
235 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
15676462 CCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
15676527 TTCGAGTTTTTAGCTGAATTGTTTTGTGCATACCAACAAAAATACAAGGATCACGCCTACCAGGT
365 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** *
15676592 TTGGGGCCAAAACAT-CTTCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGCTTCAAAAAT
430 TTGGGGCCAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAAT
* * **
15676656 TA-AGAAAAATAAAAAACGAGTCGTCTTGCCATGAAGTTTCACGTGAAGGCTTAAGGGACCATTG
494 CATA-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
15676720 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
558 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * * *
15676785 CTACCACCCTATTGATCCACAGCTTGCGCATCCC-ACCTCTCTAGCCGACGTAGAGC-CCGCACG
623 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCC-CTCTGGCCGGCGTAGTGCGCCGCCCG
* *
15676848 CTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAAC-CGAACTGA
687 CTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTCG-ACCGA
** * ** *
15676912 GGGTTGC-ACCAGCAGGATCGGCAACACACAGAGAAGGACCCGACCAATCCCCGGCTTGCGCATC
751 GGGTTGCGA-CAGCAGGATCGATAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * *
15676976 CCGCCCCTCTGGCTGGCTGAGTGCTCGCACTCTCATTTCGTGGGTTGACTTAG
815 CCGCCCCTCTGGCCGGCTGAGTGCCCGCACACTCGTTTCGCGGGTTGACTTAG
* * * * * *
15677029 GCATACGGAGTTCA-TTCCGAGTCTAAGATC-GAACTAGACCAAGGGTTGTGGCAGCACATGCTG
1 GCATACGGAGTTCATTTTC-AGTCTAAGATCGGATCAAGACCGACGGTTGCGGCAGCACATGCTG
* * *
15677092 GACTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGCACCATCATCGGAGCATCGTCGGA
65 G-CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGA
*
15677156 GAACCTGACCGACGACATTGGGGTTTCGACGATC-GGGGGGCCGGGTGGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGAT
*
15677220 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
15677285 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * *
15677350 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGTTTTGATTTTTTAGCTGAA-TTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** **
15677414 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGGTCCTTTGGAA
388 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** ** *
15677479 AAAATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGT
*
15677544 CTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
15677609 GCATTATCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
15677674 GTGCATCCCGTCTCTCTGGCAGGCATAGTGC-CCGCCCGC
648 GCGCATCCCGTCCCTCTGGCCGGCGTAGTGCGCCGCCCGC
15677713 CTGCCCACCC
Statistics
Matches: 2124, Mismatches: 253, Indels: 123
0.85 0.10 0.05
Matches are distributed among these distances:
854 1 0.00
855 79 0.04
856 1 0.00
858 2 0.00
861 1 0.00
863 12 0.01
864 363 0.17
865 200 0.09
866 2 0.00
867 3 0.00
868 250 0.12
869 390 0.18
870 50 0.02
871 2 0.00
872 1 0.00
873 1 0.00
876 1 0.00
877 1 0.00
881 1 0.00
882 2 0.00
886 2 0.00
888 1 0.00
889 4 0.00
890 7 0.00
891 176 0.08
892 1 0.00
893 7 0.00
894 445 0.21
895 118 0.06
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (867 bp):
GCATACGGAGTTCATTTTCAGTCTAAGATCGGATCAAGACCGACGGTTGCGGCAGCACATGCTGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
ACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCCCTCTGGCCGGCGTAGTGCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATG
GAGTTCATTCCCAGTCTAAGATCAGACTCGACCGAGGGTTGCGACAGCAGGATCGATAGCACACA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACA
CTCGTTTCGCGGGTTGACTTAG
Found at i:15676167 original size:26 final size:26
Alignment explanation
Indices: 15676138--15676190 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15676128 GTTGACTTAG
*
15676138 GCATACGGAGTTTATT-CTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
15676164 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15676190 G
1 G
15676191 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15677838 original size:26 final size:26
Alignment explanation
Indices: 15677809--15677861 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15677799 GTTGACTTAG
*
15677809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15677835 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15677861 G
1 G
15677862 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15679526 original size:868 final size:867
Alignment explanation
Indices: 15677835--15682952 Score: 5076
Period size: 869 Copynumber: 5.9 Consensus size: 867
15677825 CCCAGTCTAA
* * * * ** *
15677835 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTAAGGGTTGCGGCAGCACATGTTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * *
15677900 CTCGAACATGTGCTAGTGCCATATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15677965 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGTATGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
15678029 GATGGGTGCTGGTACTTGACCCTTATATTGTCCCCTTATCCCTCATTAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCAAGAACTCACA
* * * * * *
15678094 CCCACTTAAAGTGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTATAGTGCCTGAAATA
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15678159 GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGT
* ** * ** *
15678224 GCATGCCAACAAAAATGCAAGGATCACGTCTATTAAGTTTGGGGCCAAAAATCCTTAGGAAAAAT
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * *
15678289 TTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15678354 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAG
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * * * * *
15678419 TGGCACATAGAAATCTGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCCCGGCCTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
** * * * *
15678484 ATCCCACCCCTCTGGCAGACGTAGTGCCCGCCCGCTCGCTCGTTTCGTTGGTTGGCTTAGGCATA
650 ATCCCGTCACTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
15678549 CGGAGTTCA-TTCTTAGTCTAAGATCAGATCGGTCTGAAGGTTGCAGCAGCAGGA-CTGGCAACA
715 CGGAGTTCATTTC-TAGTCTAAGATCGGACCCGACCGAGGGTTGCAGCAGCAGGATC-GGCAGCA
* * ** * * *
15678612 CACAAATGCAGACCCGAC-CGATCTTCGGCTTGCGCAT-CTCGCCCCTCTAGCCAGCTGAGCACC
778 CACAGAGGGGGACCCGACGC-ATCCTC-GCTTGC-CATCCTAGCCCCTCTAGCCAGCTGAGCGCC
*
15678675 CGCACGCTCGTTTCATGGGTCGACTTAG
840 CGCACGCTCGTTTCATGGGTTGACTTAG
* ** *
15678703 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGAAAGCACAAGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15678768 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCCCCATCGCCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
15678833 ACCTGACCGGCAGCATTGGGGTTCCGATGATCGGAGGGGTCGGGGGGTGTGCCCACATGATGTTC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
15678898 GATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
15678963 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15679028 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTGTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGT
* * *
15679093 GCATGCCAA-AAAAATACAAGGATCACGTCCACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
15679157 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* **
15679222 CCATGAAACTTCACGTGAACGCTTAAGGGACCA-TGTTATGAATTTACAAGCCATAAAAATATCA
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCATAAAAATGGCA
* * * *
15679286 TTGGCATGTAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* ** * * * *
15679351 CAACCCACCACT-TGGCCGACGTAATGCCCGCCAGCCCGCTCGTTTCATCGATTGGCTTAGGCAT
649 CATCCCGTCACTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
15679415 ACGGAGTTCATTTCTAGTCTCAGATCGGACCCGACCGAGGGTTACGGCAGTAAGATCGGCAGCAC
714 ACGGAGTTCATTTCTAGTCTAAGATCGGACCCGACCGAGGGTTGCAGCAGCAGGATCGGCAGCAC
* *
15679480 ACAGAGGGGGACCCGGCGCATCCTCGCTTATGCCATCCTAGCCCCTC-AGCCA-CTGAG-GCCAT
779 ACAGAGGGGGACCCGACGCATCCTCGC-T-TGCCATCCTAGCCCCTCTAGCCAGCTGAGCGCC-C
* *
15679542 GCACGCTCAG-TTCATAATGTTTGACTTAG
841 GCACGCTC-GTTTCAT--GGGTTGACTTAG
* * *
15679571 GCATACA-GAGTTCATTCCCATCAAGGCAATAAACGAGTCTTCCCAGTCTGAGATTGGATCAGAT
1 GCATA-AGGAGTTCA-T----TC----C------C-AGTC-T---A-----AGATCGGACCAGAC
* *
15679635 CGAGGGTTGTGGCAGCACATGCTGGGCTTGGG-ATGTGCTGGT-CCGTATTTTTCTTCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * ** * * *
15679698 CACCATTGTCGGAGCATCACCGGAGAACCTGATCGACGGCATTAGGGTTCCGGCGATC-GAGGGG
105 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGG
* * * *
15679762 CCGAGGGGGTGTACGCACATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATCGGCCCCCTA
170 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTA
** *
15679827 TCCCTCATCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
15679892 CC-GTAGCCATTTAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * **
15679956 -TTCATGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCCTG
363 TTTGA-GTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* **
15680020 TTTGGGGCCAAAACTCCTTTCGAAACAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAAT
427 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
15680085 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
492 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** * *
15680150 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGATATATGAAGATGTGCCTAATCCCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
15680215 TACCACCCTATCGATCCATGACTTGCGCATCCTGTCAATCTAGCCGACGTAGT----GCCCGCCC
622 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCACTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * * * *
15680276 GCTCGTTTTGTCCGTTAGCTTAGGCATACAGAGTTCATCTC-AGTCTAAGATAGGA-CCGAACCG
687 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCTAGTCTAAGATCGGACCCG-ACCG
* * *
15680339 AGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATGAATCGC-CGACCTGTG-CA
751 AGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACGCATC-CTCG--CT-TGCCA
* * * * * * * *
15680402 TCC-AGCCCTTCTCGTCGGCTGAACGCGCGTACGCTCGTTTCGTGGGTTGACTTAG
812 TCCTAGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
15680457 GCATACA-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGA
1 GCATA-AGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C----------CA-GA
* * * *
15680521 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGAGCTAGTGCCGTATTTTTCTTCATCGGG
39 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
* * * *
15680586 GCACGATCGCTGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTTC-AGCGATCGG-GG
104 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGAGG
15680649 TGGCCGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC----A---GG------T-TT-G
168 -GGCC-----GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
15680699 -----------------------AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
227 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
15680741 ATGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGAAACTTTTTTCAAATGGTCACAAAATCTT
292 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * * * * *
15680806 GTACACTTCGAGTTTTTAGCT-GATGTTTTTGTACATACCAATAAAAATGCAAGGATCATGTCTA
357 GTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * **
15680870 CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
422 CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
* *
15680935 AAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACC
487 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15681000 ATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGCAGAAATATGAAGATGTGACTAAAC
552 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
15681065 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCC
617 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCACTCTGGCCGACGTAGTGCCCGCC
* * * * ***
15681130 CGCCCGCTCGTTTCGTCGGTTGGCTCAGGCATACAGAGTTCATTCCGT-GTCTAA-ATCAGAAAA
682 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTC-TAGTCTAAGATCGGACCC
* * * * * * * *
15681193 AACCGAGGGTTGCGGCAGCAAGATCAGCAGTACACAGAGGGGGACCCAAC-CGATCCCTGGCTTA
746 GACCGAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACGC-AT-CCTCGCTTG
* * * *
15681257 CGCATCC-CGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
809 C-CATCCTAGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * * *
15681316 GCATACA-GAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAAGGTTGCGGCAGCACATGTTCG
1 GCATA-AGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* *
15681380 GCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
15681445 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTA
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
15681510 CGATGGGTGCTGGTTCTTGGCCCTTATATTAGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
15681575 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTTAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
15681640 GGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT-AAATTTTTTT
* *
15681705 GCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
** ** * *
15681770 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATACAAAACGACTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15681835 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGTCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15681900 ATTGCCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATTGATCCACGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * * * * *
15681965 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCCCTCATTTCATCGGTTGGCTGAGGCA
648 GCATCCCGTCACTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
15682030 TACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGA-GGTTGCAGTAGTAGGATCGACAGCA
713 TACGGAGTTCATTTCTAGTCTAAGATCGGACCCGACCGAGGGTTGCAGCAGCAGGATCGGCAGCA
** * * * * * *
15682094 CGTAGAGGGGGACCCGATTG-ATCCCCGGCTTGCGCATCAT-GCCCCTCTGGCCAGCTAAGTGCC
778 CACAGAGGGGGACCCGA-CGCATCCTC-GCTTGC-CATCCTAGCCCCTCTAGCCAGCTGAGCGCC
* *
15682157 CGCAAGCTCGTTTCGTGGGTTGACTTAG
840 CGCACGCTCGTTTCATGGGTTGACTTAG
* * *
15682185 GCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGAC
1 GCATAAGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C---------A---GAC
* * ** * * ** ***
15682250 CAAGGGTTACGGCAGCACATGCTAAGCTC-GGCAT-TGC--G-GCC-AATTTTTC-ACACCCATC
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-GTCGGG
**
15682308 GCACCATC-ATGGAGCA-C--C-GAGAACCTGACCGACGGCA-T-GGGTT--GACGATC-GA-GG
104 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGG
* *
15682362 GCC--GGGG-GT-CGGACAT--TG-GCGATGGG-GC--GTTCTT-G---TTATATT-GCTCCCTA
169 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTA
* *
15682412 TCCC-CATCAAACCCTCGAGAACTCACA-CCCCTT-AAG-GCA-TTGAGATTTTACAGG-TTGTT
233 TCCCTCATCAAA-CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
15682471 GCCAGTAGGCCTTTAAAAGTGCTCTGAAAT-GGGACACTTTTTTCAAAT-GTCACAAAATTTTCT
297 GCCAGTA-GCCATT-AAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA-TCT-T
* * * * *
15682534 GTAACACTTCCGAG--TTTACCT-GATTTTTTTGTGCATG-C-A-AGAAATACAAGGGACCACGT
357 GT-ACACTT-TGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCACGT
* * * *
15682593 CTACCAAG-TT-GGGCCAAAA-TGCCTTCCCGAAAAAATTGCTAAAAAAAATCTCGAACCGTAGA
419 CTACCAAGTTTGGGGCCAAAACT-CCTT-TCGAAAAAATT--T-TAAAAAATCCCGAACCGTAAA
** *
15682655 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTT
479 AAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * ** *
15682720 AAGGGACCATTGTATAAATTTACAAGCCACAAATTTGGCATTGGCACTTG--GAAATATAAAGAT
544 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--TGCAGAAATATGAAGAT
* * * * * * *
15682783 GTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTCCGGATCCCGTCTCTCTAGCCGGCGT
607 GTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCACTCTGGCCGACGT
*
15682848 AGTGCCCTCCGCCCGCCCGCCCGGCCGCTCGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATT
672 A--G---T--GCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
15682913 CCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCAGCA
726 TCTAGTCTAAGATCGGACCCGACCGAGGGTTGCAGCAGCA
15682953 TATGCTGGGC
Statistics
Matches: 3594, Mismatches: 448, Indels: 413
0.81 0.10 0.09
Matches are distributed among these distances:
828 32 0.01
833 117 0.03
834 4 0.00
835 2 0.00
841 1 0.00
842 2 0.00
844 2 0.00
846 1 0.00
854 1 0.00
855 331 0.09
856 89 0.02
857 21 0.01
858 17 0.00
859 393 0.11
860 36 0.01
861 24 0.01
862 23 0.01
863 27 0.01
864 9 0.00
865 3 0.00
866 30 0.01
867 243 0.07
868 414 0.12
869 650 0.18
870 81 0.02
871 18 0.01
872 2 0.00
873 3 0.00
874 7 0.00
875 2 0.00
876 5 0.00
877 2 0.00
878 5 0.00
879 2 0.00
880 9 0.00
881 3 0.00
882 5 0.00
883 3 0.00
884 23 0.01
885 3 0.00
886 36 0.01
887 102 0.03
888 76 0.02
889 92 0.03
890 106 0.03
891 415 0.12
892 23 0.01
893 40 0.01
894 34 0.01
895 25 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (867 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCACTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTTCTAGTCTAAGATCGGACCCGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACAC
AGAGGGGGACCCGACGCATCCTCGCTTGCCATCCTAGCCCCTCTAGCCAGCTGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAG
Found at i:15680493 original size:26 final size:26
Alignment explanation
Indices: 15680457--15680509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680447 GTTGACTTAG
15680457 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15680483 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15680509 G
1 G
15680510 ATTGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15682222 original size:26 final size:26
Alignment explanation
Indices: 15682185--15682237 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15682175 GTTGACTTAG
* *
15682185 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
15682211 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15682237 G
1 G
15682238 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15683796 original size:26 final size:26
Alignment explanation
Indices: 15683767--15683819 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15683757 GTTGACTTAG
* *
15683767 GCATATGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15683793 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15683819 G
1 G
15683820 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15684697 original size:26 final size:25
Alignment explanation
Indices: 15684661--15684717 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 25
15684651 GACTTAGGCG
*
15684661 TACGAAGTTCATTCACAGTCTAAGCA
1 TACGGAGTTCATTCACAGTCTAAG-A
*
15684687 TACGGAGTTCATTCCCAGTCTAAGA
1 TACGGAGTTCATTCACAGTCTAAGA
15684712 T-CGGAG
1 TACGGAG
15684718 CAGACCGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 5 0.17
25 2 0.07
26 22 0.76
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
TACGGAGTTCATTCACAGTCTAAGA
Found at i:15685172 original size:879 final size:878
Alignment explanation
Indices: 15682897--15686248 Score: 3671
Period size: 891 Copynumber: 3.7 Consensus size: 878
15682887 GTTGCCTTAG
* *
15682897 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGC--A-------
* * * * * * *
15682962 CTGGGGCAAGTGCTGGTACCACTTTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
57 C--AGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * ** * ** **
15683027 ACCTGATCGATGGGATTGAGGTTTCGGTGATCGGGGGAGCCAGGGGGGTGTGCTTACATGATGTG
120 ACCCGACCGACGACATTGGGGTTTCGACGATCGGGGG-GCCAGGGGGGTGTGCGCACATGATGTG
* ** * * *
15683092 CGATGGGTGCTGGTACTTGGCCCTTATATTGAACCCTTTTCCCTCATCAAACCTTGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15683157 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15683222 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCATGTTTTTAGATGAATTTTTTT
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA-GTTTTTAGCTGAA-TTTTTT
* * * * *
15683286 GTGGATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCACAACTCCTTCCGAAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *
15683351 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATC
442 AATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
* *
15683416 TCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
15683481 CATTGGCATGC-AAAATATGAAAATGTGACTAAACCCACCTACCACCCTATCAATCCA-TGACTT
571 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTT
* * * *
15683544 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGTTCATTTCATCGGTTGGCTTAGG
635 GCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCCG-CCA-CCGCTCATTTCGTC-GTTGGCTTAGG
* * * *
15683609 CATACGGAGTACATTTCC-AGTCTAAGATCGGA-TCGGGCTGAGGGTTGCGACAGCAAGATCGAC
697 CATACGGAGTTCA-TTCCTAGTCTAAGATCAGACT-GGACTGAGGGTTGC-ACAGCAGGATCGAC
* * *
15683672 AGCACGCAGAGTGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCG
759 AGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCTGCTGAGCG
* * * * * *
15683737 CCCGCACGCTTGTTTCTTGGGTTGACTTAGGCATATGGAGTTTATTCCCAATCTAA
824 CCCGCACGCTCGTTTC-GGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** *
15683793 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACAGGC-A--
* *
15683858 CTCGGGCATATGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
63 -T---G--TA--CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
15683923 ACCTGA-CTACCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
120 ACCCGACCGA-CGACATTGGGGTTTCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGT
* * * * *
15683987 TCGGTGGTTACTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * *
15684051 CACCCTTTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15684116 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTATAGCTAAATTGTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTT
* * * * * *
15684181 GTGCATACCAACAAAAATACAAGGTTCACGCCTACCAAGTTTGGGGCGAAAACAT-ATTCTAAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAA
** * *
15684245 AAATTTTAAAAAATCTGGAACCGTAAAAAGCTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
441 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
*
15684310 TTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
15684375 CATTCTCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
571 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
** * * *
15684440 CGCATCCCACCTCTCTAGCCGGCGTAGAGCCCG-CA-CGCTCGTTTGGTCAGTTGGCTTAGGCAT
636 CGCATCCCGTCTCTCTGGCCGGCGTAGAGCCCGCCACCGCTCATTTCGTC-GTTGGCTTAGGCAT
* * * * *
15684503 ACGGAGTTCATTCCTAGTGTAAGATCAAACTGAACTGAGGGTTGCACCAGTAGGATCGACAACAC
700 ACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTGCA-CAGCAGGATCGACAGCAC
* * * *
15684568 ACAGAGAAGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCTGCTGAGCGCCCGT
764 GCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCTGCTGAGCGCCCGC
* * *
15684633 ACGCTCATTTCGGGAGTTGACTTAGGCGTACGAAGTTCATTCACAGTCTAA
829 ACGCTCGTTTCGGG-GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
15684684 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGGTTGCGGCAGCACA-GCATGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACAGGCATGT
* * * *
15684748 ACTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCCGACCGAC
66 ACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCCGACCGAC
* *
15684813 GACATTGGGGTTTCGACGATCGGGGGGCCGGGTGGGGTGTGCACACATGATGTGCGATGGGTGCT
131 GACATTGGGGTTTCGACGATCGGGGGGCCAGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
15684878 GGTACTTGGCACTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAT
195 GGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
15684943 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
15685008 TTTCAAATGGTCATAAAATCTTATGCACTTTGATTTTTTAGCTGAATTTTTTATGCATGCCAACA
325 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACA
* *
15685073 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAAATTTTAAAAAAT
390 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* *
15685138 CCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
455 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* * *
15685203 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
520 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAA
* ** * * * *
15685268 AATATGGAGATGTGGATAGACCCACATGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
585 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
* *
15685333 CTGGCGGGCGTAGTGCCCACCCGCCCGCCCACTCGCTCATTCCGTCGATTGGCTTAGGCATACGG
650 CTGGCCGGCGTA--G---A---GCCCG-CCAC-CGCTCATTTCGTCG-TTGGCTTAGGCATACGG
* *** * * *
15685398 AGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGTGAGCAGGATTGGCAGCACGTAG
704 AGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTG-CACAGCAGGATCGACAGCACGCAG
* ** * * * * *
15685463 AGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTTTGG-CTGGCTGTGCGCCCACACG
768 AGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCT-GCTGAGCGCCCGCACG
* *
15685527 CTCGTTTCGTGGCTTGATTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
832 CTCGTTTCG-GGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
**
15685575 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACA-------
** * * *
15685640 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG-CTGGGGCACCATCGTCGGACGGCATTG--GG
59 ----GGCATGTACTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGA--GCATCGCCGG
** * ** * *** *
15685702 -GTTCCGACGATCGGGGGGGCCGGAGGGGATGTGCGCACATGATGTGCGATGGGTTTGCGCACAT
117 AGAACC--CGA-C--CGACGACATTGGGG-T-TTCG-AC--GA--T-CG--GGG---G-GC-CA-
** * * * ** * * * *
15685766 GATGTGCGATGGGTGTACGCACATGATGTGAGATGGGTGTTGGTACTTGGCCCTTATATTTGCCC
161 GGGGGGTG-TGCGCA------CATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCC
15685831 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT----A-C------------A-A-GTTT
219 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
15685877 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGT
284 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
15685942 ACACTTTGAGTTTCTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCATGTCTACC
349 ACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * * *
15686007 AAGCTTGGGACAAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAGCACAAAAAGTTTCAAA
413 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* *
15686072 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
478 AATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
15686137 TGTATGAATTTACAAGCCATGAAAATTGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
543 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCC
* * * * *
15686202 ACCTACCATCATATCGATCCGCAACTTGTGCATCCCGTCTCTCTGGC
608 ACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGC
15686249 TGGTATAGTG
Statistics
Matches: 2102, Mismatches: 267, Indels: 159
0.83 0.11 0.06
Matches are distributed among these distances:
878 11 0.01
879 373 0.18
880 146 0.07
881 3 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 2 0.00
887 6 0.00
889 3 0.00
890 13 0.01
891 440 0.21
892 4 0.00
893 2 0.00
894 129 0.06
895 277 0.13
896 176 0.08
897 5 0.00
902 4 0.00
903 42 0.02
904 3 0.00
905 6 0.00
907 7 0.00
908 1 0.00
909 3 0.00
910 89 0.04
911 255 0.12
912 3 0.00
914 1 0.00
915 2 0.00
917 3 0.00
920 1 0.00
921 2 0.00
922 4 0.00
923 3 0.00
924 1 0.00
925 1 0.00
929 77 0.04
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (878 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACAGGCATGT
ACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCCGACCGAC
GACATTGGGGTTTCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGAGCCCGCCACCGCTCATTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCTA
GTCTAAGATCAGACTGGACTGAGGGTTGCACAGCAGGATCGACAGCACGCAGAGAGGGACCCGAC
CGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGGGGTT
GACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:15685585 original size:26 final size:26
Alignment explanation
Indices: 15685549--15685601 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15685539 CTTGATTTAG
15685549 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15685575 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15685601 G
1 G
15685602 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15685765 original size:24 final size:24
Alignment explanation
Indices: 15685731--15685805 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
15685721 CCGGAGGGGA
15685731 TGTGCGCACATGATGTGCGATGGG
1 TGTGCGCACATGATGTGCGATGGG
*
15685755 TTTGCGCACATGATGTGCGATGGG
1 TGTGCGCACATGATGTGCGATGGG
* *
15685779 TGTACGCACATGATGTGAGATGGG
1 TGTGCGCACATGATGTGCGATGGG
15685803 TGT
1 TGT
15685806 TGGTACTTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.19, C:0.15, G:0.39, T:0.28
Consensus pattern (24 bp):
TGTGCGCACATGATGTGCGATGGG
Found at i:15689044 original size:880 final size:877
Alignment explanation
Indices: 15686308--15689784 Score: 4602
Period size: 870 Copynumber: 4.0 Consensus size: 877
15686298 TAGGCATACG
* * *
15686308 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * * *
15686373 GTTCATTCCCAATCTAAGATCAGATCGGACTAAGGGTTGCGGCAGCACATGCTGGGCTCGAACAT
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCAT
* * * * * * * *
15686438 GTGCTGGTGCCACATTTTTCTCCGTTGGGGCACCATCGTCGGAGCATCGCCGAAAAACCTGACTG
131 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCG
* * * * *
15686503 GCAGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTATGCGCACATGATGTGCGATTGGTG
196 ACAGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
15686568 CTGGTACTTGACCCTTATATTGTCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCACTTA
260 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
15686633 AAGTGCATTTGATATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACC
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
15686698 TTTTTCAAATGGTCACAAAATCTTATACGCTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
* * * **
15686763 ACAAAAATGCAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTAGGAAAAAATTTTAAAA
455 ACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
*** ** *
15686828 AATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
520 AATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
15686893 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGTAGTGGCACGC
585 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * * ** *
15686958 AGAAATCTGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCCCAGCTTGCGCATTTCACC
650 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* **
15687023 CCTCTGGCCGACGTAGTGCCCGCCCG--C-T-----CGCTTGTTTCGTCGGTTGGCTTAGGCATA
715 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
15687080 CAGAGTTCATTCCCAGTCTAAGATCAGATC-AGTCTAAGGGTTGCAGCAGCAGGATTGGCAACAC
780 CGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTAAGGGTTGCGGCAGCAGGATCGGCAGCAG
* * *
15687144 ACAGATGGGGACCTGATCGATCCCTGACTTGCGC
844 ACAGAAGGGGACCCGATCGATCCCAGACTTGCGC
* * * * * * *
15687178 ATCTCACCCCTCTAGCCAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAAGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
15687243 GTTCATTTCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAAAAGCACATGCTGGGCTCG-GACA
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAG-CA
* * *
15687307 TGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCCCCATCGTCGGAGCATCGTCGGAGAACCTGACC
130 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACC
* * * *
15687372 GACAGCATTGGGGTTCCGACGATCGGGAGGGTCGGGGGGGTGTGCCCACATGATGTTCGATGGGT
195 GACAGCATTGGGGTTCCGACGATCGGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
15687437 GCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
15687502 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
15687567 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGCA-TTTTTCGCTGAA-TTTTTTATGCATGC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTATGCATGC
* * *
15687630 CAACAAAAACACAAGGATCACGTCTTCCAAGTTCGGGGCCAAAAGTCCTTCCGAAAAAATTTTAA
453 CAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
15687695 AAAATCCCAAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
518 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
15687760 AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
583 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
15687825 GTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTACGCATCCCG
648 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * ** *
15687890 TCTCTCTGGCAGGCGTAGTGCTCGCTCGCCTGCCCGCCCGCCCGCTTGTTTCGTCGATTGGCTTA
713 CCTCTCTGGCCGACGTAGTG--C-C-CGCCCGCCCGTCCGCCCGCCCGTTTCGTCGGTTGGCTTA
* ** ** ** * * *
15687955 GGCATACGAAGTTCATTCCCAGTCTAAGATTGGATTGAACCCAGGGTTACGGCAGCAAGATCGAC
774 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGC
** * ** *
15688020 AGCAGGTAGAGGGGGACCCGGCCGATCCCAGTCTTGCGC
839 AGCAGACAGAAGGGGACCCGATCGATCCCAGACTTGCGC
*
15688059 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
15688124 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGAGCAA
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCAT
* * *
15688189 GTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCATCGGAGAACCTGACC-
131 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCG
*
15688253 AGCAGCATTGGGGTTTC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
196 A-CAGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
15688317 GCTGGTATTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
15688382 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTAAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
15688447 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTCGCTGAATTTTTTTGTGCATGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* * ** * * *
15688512 AACAAAAATACAGGGATCATGTCTAAAAAGTTCAGGGCCAAACCTCCTTCCTAAAAAATTTTAAA
454 AACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * * *
15688577 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATTAA
519 AAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
15688642 ACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATACAAATGGCATTGGCACA
584 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
15688707 CAGAAATATGAAGATGTGCCTAAACCCACCTCCCACCCTATCGATCCACGGCATGCGCATCCCGC
649 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * *
15688772 CTCACTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCCCGCTTTATCGTCGGTTGGCTTAGG
714 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCCCG--TT-TCGTCGGTTGGCTTAGG
* *
15688837 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAACAGGATCGGCAG
776 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGCAG
** * **
15688902 CAGACAGAAGGAAACCCGATCGATTCCCAG-CGTGAAC
841 CAGACAGAAGGGGACCCGATCGA-TCCCAGACTTGCGC
* *
15688939 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
15689004 GTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCAT
15689069 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC---G---C--CGGAGAACCTGACCG
131 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCG
* * * * *
15689123 ACGGCATTAGGGTTCCGACAAT-TGGGGGGCCGGGGGGGGTGTGCGCATATGATGTGCGATGGGT
196 ACAGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGT
** * * *
15689187 GCTGGTACTTGGCCCTTATATTGGTACCTTATCCCTCATCAAGCCTCCAGAACTCACACCCCCTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
15689252 AAACAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
15689317 TTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* * * * *
15689382 AACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCTTCCAAAAAAATTTTAAA
454 AACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
*
15689447 AAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
519 AAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
15689512 ACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATG
584 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
15689577 CAGAAATATAAAGATGTGCCTAAACCTACCTACCACCCTAT-GAATCCACGTCTTGCGCATCCCG
649 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCTTGCGCATCCCG
* * * * * *
15689641 TCTTTCTGGCCGACGTAGTACCCACCCGCCCG-CCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
713 CCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCC-GCCCGCCCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
15689705 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGATTACGGTAGCAGGATTGGCAGC
777 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGCAGC
*
15689770 ACG-CAGAGGGGGACC
842 A-GACAGAAGGGGACC
15689785 TGGTCAATCC
Statistics
Matches: 2286, Mismatches: 289, Indels: 67
0.87 0.11 0.03
Matches are distributed among these distances:
867 84 0.04
868 11 0.00
869 292 0.13
870 850 0.37
871 6 0.00
872 1 0.00
873 5 0.00
874 1 0.00
875 1 0.00
877 22 0.01
878 1 0.00
879 5 0.00
880 442 0.19
881 563 0.25
882 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCAT
GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCG
ACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
CTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGCAGCAGAC
AGAAGGGGACCCGATCGATCCCAGACTTGCGC
Found at i:15693144 original size:867 final size:871
Alignment explanation
Indices: 15691399--15693755 Score: 4014
Period size: 867 Copynumber: 2.7 Consensus size: 871
15691389 CATCATCATT
* * ** * * * * * *
15691399 GGAGAACCTGACCGACGACATTGAGGTTTCAACGATCGGGGGGGCCGGGGGGGTGTGTGCAAATG
1 GGAGAACCTGACCGACGTCATTGGGGTTTTGATGATC-GAGGGGCCCGGGGGTTGTGCGCACATG
* * **
15691464 ATGTGCGATGGATGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCAAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
* * ** *
15691529 CTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCACTTAAAAAGCACTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
15691594 GAAATGGGGACAATTTTTTCAGATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGGCGAATTT
195 GAAATGGGGAC-ATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGCGAATTT
15691659 TTTTGTGCATGCCAACAAAAATACAAGGA-CGACGTCTACCAAGTTTGGGGCCAAACTCATTCCA
259 TTTTGTGCATGCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAC-C-TTCCA
*
15691723 AAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTATCGAAAATCATGAAAAATAGAAAATGAGTC
321 AAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGT-TCGAAAATCATGAAAAATAGAAAACGAGTC
*
15691788 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
384 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
15691853 TGGCATTGGCACACAGAAATATGAACATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
449 TGGCATTGGCACACAGAAATATGAACATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
15691918 TTGCACTTCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGTCTGCTCGTTTCGTTGG
514 TTGCACTTCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGTCTGCTCGTTTCGTTGG
15691983 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCAGCAACA
579 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCAGCAACA
15692048 GGATCGGCAGCACGTAGTGCTGGACCCGATCGATCCCTGATTTGCGCTTTTTGCCCCTCCAACCG
644 GGATCGGCAGCACGTAGTGCTGGACCCGATCGATCCCTGATTTGCGCTTTTTGCCCCTCCAACCG
15692113 GCTGAGTGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
709 GCTGAGTGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
15692178 ATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTTCCATATTTT
774 ATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTTCCATATTTT
15692243 TCTTCACCGGGGCACCATCGCCAGAGCATTGTC
839 TCTTCACCGGGGCACCATCGCCAGAGCATTGTC
15692276 GGAGAACCTGACCGACGTCATTGGGGTTTTGATGATCGAGGGGCCCGGGGGTTGTGCGCACATGA
1 GGAGAACCTGACCGACGTCATTGGGGTTTTGATGATCGAGGGGCCCGGGGGTTGTGCGCACATGA
15692341 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
15692406 TCACACCCACTTAAAAAGCACTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGT-TG
131 TCACACCCACTTAAAAAGCACTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTG
15692470 AAATGGGGACATTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGGCGAATTTT
196 AAATGGGGACATTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGGCGAATTTT
15692535 TTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-C-T-CAAAAA
260 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTTCCAAAAA
15692596 ATTTTAAAAAATCCCGAACCGTAAAAAGTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
325 ATTTTAAAAAATCCCGAACCGTAAAAAGTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
15692661 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
390 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
15692726 TGGCACACAGAAATATGAACATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
455 TGGCACACAGAAATATGAACATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
15692791 TTCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGTCTGCTCGTTTCGTTGGTTGGCT
520 TTCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGTCTGCTCGTTTCGTTGGTTGGCT
15692856 TAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCAGCAACAGGATCG
585 TAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCAGCAACAGGATCG
15692921 GCAGCACGTAGTGCTGGACCCGATCGATCCCTGATTTGCGCTTTTTGCCCCTCCAACCGGCTGAG
650 GCAGCACGTAGTGCTGGACCCGATCGATCCCTGATTTGCGCTTTTTGCCCCTCCAACCGGCTGAG
15692986 TGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAA
715 TGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAA
15693051 CCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTTCCATATTTTTCTTCA
780 CCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTTCCATATTTTTCTTCA
15693116 CCGGGGCACCATCGCCAGAGCATTGTC
845 CCGGGGCACCATCGCCAGAGCATTGTC
15693143 GGAGAACCTGACCGACGTCATTGGGGTTTTGATGATCGAGGGGCCCGGGGGGTTGTGCGCACATG
1 GGAGAACCTGACCGACGTCATTGGGGTTTTGATGATCGAGGGGCCC-GGGGGTTGTGCGCACATG
15693208 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
15693273 CTCACACCCACTTAAAAAGCACTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCACTTAAAAAGCACTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
15693338 TAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGGTGAATT
195 GAAATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGGCGAATT
* * *
15693402 TTTTTGGGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAA--CCTTCC
* * *
15693467 AAAAAAATTTTAAAAGATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
320 -AAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTCGAAAATCATGAAAAATAGAAAACGAGT
15693532 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
383 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** * * * * *
15693597 GTGGCATTGGCATGCAAAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCAATCCATGG
448 ATGGCATTGGCACACAGAAATATGAACATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
15693662 CTTGCCCATCCTGTCTCTCTCGCCGGC---G-G---A---G--CGCCCGCCTGCTCGTTTCGTCG
513 CTTGCACTTCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGTCTGCTCGTTTCGTTG
* *
15693715 GTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
578 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCG
15693756 GATCGAACCG
Statistics
Matches: 1418, Mismatches: 47, Indels: 41
0.94 0.03 0.03
Matches are distributed among these distances:
866 59 0.04
867 562 0.40
868 175 0.12
869 53 0.04
870 65 0.05
871 4 0.00
872 1 0.00
874 66 0.05
875 54 0.04
876 142 0.10
877 63 0.04
878 174 0.12
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (871 bp):
GGAGAACCTGACCGACGTCATTGGGGTTTTGATGATCGAGGGGCCCGGGGGTTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
TCACACCCACTTAAAAAGCACTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGCGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTTCCAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAACATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACT
TCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGTCTGCTCGTTTCGTTGGTTGGCTT
AGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCAGCAACAGGATCGG
CAGCACGTAGTGCTGGACCCGATCGATCCCTGATTTGCGCTTTTTGCCCCTCCAACCGGCTGAGT
GCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAAC
CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTTCCATATTTTTCTTCAC
CGGGGCACCATCGCCAGAGCATTGTC
Found at i:15694963 original size:26 final size:26
Alignment explanation
Indices: 15694915--15694972 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
15694905 CCCCTTTCGA
* * * *
15694915 AAAAATTTTGAAAAATCCCGAAACAT
1 AAAAAGTTTCAAAAATCACGAAAAAT
*
15694941 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTCAAAAATCACGAAAAAT
15694967 AGAAAA
1 A-AAAA
15694973 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.60, C:0.10, G:0.09, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTCAAAAATCACGAAAAAT
Found at i:15697107 original size:26 final size:26
Alignment explanation
Indices: 15697078--15697160 Score: 125
Period size: 26 Copynumber: 3.2 Consensus size: 26
15697068 CGTGGGTTGA
15697078 CTAAGGCATACGGAGTTCATTCCAGT
1 CTAAGGCATACGGAGTTCATTCCAGT
15697104 CTAAGG-ATACGGAGTTCATTCCCAGT
1 CTAAGGCATACGGAGTTCATT-CCAGT
*
15697130 CTAA-GCATACGAAGTTCATTCTCAGT
1 CTAAGGCATACGGAGTTCATTC-CAGT
15697156 CTAAG
1 CTAAG
15697161 ATCGGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
25 16 0.31
26 36 0.69
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
CTAAGGCATACGGAGTTCATTCCAGT
Found at i:15698893 original size:26 final size:26
Alignment explanation
Indices: 15698857--15698909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15698847 GTTGACTTAG
*
15698857 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
15698883 GCATATGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
15698909 G
1 G
15698910 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:15699614 original size:304 final size:304
Alignment explanation
Indices: 15699048--15699644 Score: 894
Period size: 304 Copynumber: 2.0 Consensus size: 304
15699038 AACGATCGAG
* *
15699048 GGGCCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAAGAACCATCGCTAGAGCATCGTCGAA
1 GGGCCGGGCATGTGCTCGTGCCACAATTTTCTTCGTCAAAGAACCATCGCTAGAGCATCGTCGAA
* * * **
15699113 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATG
66 GAACCTGACCGACGGCATTGGGGTTCCAACGATCGACGGGGTCCAGGGGGTGTGCGCACATGATG
* **
15699178 TGCAATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
131 TGCAATGGGTGCTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
15699243 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAACCATTAGAGTGTCTGAA
196 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAACCAATAAAGTGTCTGAA
*
15699308 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATGCT
261 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACATGCT
** * * * *
15699352 GGGCTCGGGCATGTGCTCGTGCCGTAATTTTCTTCGTCGAGGCACCATCG-TCGGAGCATCGTCG
1 GGGC-CGGGCATGTGCTCGTGCCACAATTTTCTTCGTCAAAGAACCATCGCT-AGAGCATCGTC-
* * *
15699416 GAA-AGCCTGACCGACGGCATTGGGGTTTCAATGATCGACGGGG-CCAGGGGGTGTGCGCACATG
63 GAAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGACGGGGTCCAGGGGGTGTGCGCACATG
* *
15699479 ATGTGCGATGGGTGCTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
128 ATGTGCAATGGGTGCTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* * * *
15699544 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAATAAAGTGTTT
193 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAACCAATAAAGTGTCT
15699609 GAAATGGGGACACTTTTTTCAAATGGCCACAAAATC
258 GAAATGGGGACACTTTTTTCAAATGGCCACAAAATC
15699645 ATATAGACTT
Statistics
Matches: 262, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
304 177 0.68
305 82 0.31
306 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (304 bp):
GGGCCGGGCATGTGCTCGTGCCACAATTTTCTTCGTCAAAGAACCATCGCTAGAGCATCGTCGAA
GAACCTGACCGACGGCATTGGGGTTCCAACGATCGACGGGGTCCAGGGGGTGTGCGCACATGATG
TGCAATGGGTGCTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAACCAATAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACATGCT
Found at i:15701455 original size:136 final size:136
Alignment explanation
Indices: 15701211--15701487 Score: 491
Period size: 136 Copynumber: 2.0 Consensus size: 136
15701201 GATTTTACAG
* *
15701211 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAGAATC
1 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATC
* *
15701276 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
66 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTC
15701341 TACCAA
131 TACCAA
*
15701347 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAGTGGTCACAAAATC
1 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATC
*
15701412 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATATAAGGATCATGTC
66 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTC
*
15701477 TACCGA
131 TACCAA
15701483 GTTTG
1 GTTTG
15701488 GGGCCAAAAC
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
136 134 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (136 bp):
GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTC
TACCAA
Found at i:15703476 original size:27 final size:28
Alignment explanation
Indices: 15703421--15703476 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
15703411 GATGACTTCG
*
15703421 GCATACCGGAGTTCCATTCCCAATCTAA
1 GCATACCGGAGTTCCAGTCCCAATCTAA
*
15703449 GCATACGGGAGTT-CAGTCCCAATCTAA
1 GCATACCGGAGTTCCAGTCCCAATCTAA
15703476 G
1 G
15703477 ATCAGGATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (28 bp):
GCATACCGGAGTTCCAGTCCCAATCTAA
Found at i:15705424 original size:26 final size:26
Alignment explanation
Indices: 15705374--15705426 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15705364 GTTGACTTAG
* *
15705374 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
**
15705400 GCATACGAAGTTCATTGTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15705426 G
1 G
15705427 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15705836 original size:898 final size:897
Alignment explanation
Indices: 15703604--15708806 Score: 6675
Period size: 896 Copynumber: 5.8 Consensus size: 897
15703594 GTTGGCTTAG
* * * * * **
15703604 GCATACAGAGTTCATTCCCATTCTAAGATTAGACCAGATCGAGGGTTGCGGCAGCACATGCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
15703669 CACGGGCATGTGCTGGTGCCGCATTCTTC-TCACCGGGACACCATCATCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* * *
15703733 ACCTGACTGGCGGCATTGGGGTTTCGACGATTGGAGGGGCCAGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGGTGTGCGCACATGATGT
*
15703798 GCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15703863 CACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** * *
15703928 TGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTATGCTTTGAGTTTTTAGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTT
* * * *
15703993 GTGCATGCCGACGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAA
* ** * * *
15704058 AATTTTAAGAAATCCCGAACTGTAAAAGGGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCA
454 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15704123 TGCCATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
15704188 ATTGGTGTGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * *
15704253 GCATCCTGTCTCTCTGGTCGGCGTAGT--GCCCGCCCGCATGCTCATTTCATTGGTTGGCTTAGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
15704316 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCTGGATCGGTAG
714 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* ** * * * *
15704381 CACGCATAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCA
779 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCTTCTGGCCGACTGAGCGCC
15704446 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
15704500 ACATACGGAGTTCATTCCCAGTATAAGATTGGACTGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** **
15704565 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGATTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* ** * *
15704630 ACCTTACCCACGGCATTGGGGTTCCGGA-GATCGGAGGGGCCTGGGGTGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCC-GACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
15704694 GCAATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15704759 CACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15704824 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGATTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTT
* * *
15704889 GTGCATGCCAACAAAAATACAAGGCTCACGTCTACCAAGTTTAGGGCCAAAACTTTTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAA
* ** * *
15704954 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15705019 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15705084 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15705149 GCATCCTGTCTCTCTGGCTGGCGTAGTGCTCACCCGCCCGCCCACTCGTTTCGTCCGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG--CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
15705214 GGCATACGAAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATTGGT
712 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * *
15705279 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCTTCTGGCCGATTGATCG
777 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCTTCTGGCCGACTGAGCG
* * *
15705344 CACGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
842 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * *
15705400 GCATACGAAGTTCATTGTCAGTCTAAGATCGGACCGGACCAAAGGTTGCAGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15705465 CTCGGACATGTGCT-GTGCCGCATATTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* * * *
15705529 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGAG-CGGGGGGGTGTGCACACATGATGTA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
** * *
15705593 CGATGGGTGCTGGTACTTGGATCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTTAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15705658 ACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCTAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
15705723 GGGGACAATTTTTTCAAATGGTCAAAAAATCTTGTACACCTTGATTTTTTAGGTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTG
*
15705788 TGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAAAACT-TTTC-GAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC--AAAACTCTTTCTGAAA
**
15705851 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
15705916 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
15705981 CATTGGCACATAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15706046 CGCATCCCGTCTCTCTAGCCGACGTA--GCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATAA
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * * * *
15706109 GCATTTTG-AGTTCATTCCAAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGGC
713 GCA-TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * *** *
15706173 AGCAAGCAGAGGGGGACCC-AGTCGATCCCTGACTTACACATCCCAT-CCC-TCTGGCCGGCTGA
777 AGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGTGCAT-CC-TGCCCTTCTGGCCGACTGA
* *
15706235 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15706294 GCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGATCGAGGGTTGCAGTAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
15706359 CTCGGGCATGTGCTGGTGCCGCATTGTTCTTCGTCGGGGCACCAT---C---G-----CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* ** * * * *
15706413 ACCTGATCGGCAACATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGGTGTGCACACATGATATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
15706478 CGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGATAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
15706543 ACCCCCTTAAGGAGCATTTAAGATTTTACGGGCTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15706608 GTGGACACTTTTTTCAAATGGTAACAAAATCTTGTACA-CTTCGACTTTTTAGCTGAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTGAATTTTTTT
* * * * *
15706672 TTGCATGCCAACAAAATTACAAGGATCATGTCTACCAAGGTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAA
* *
15706737 AATTTTAAAAAATCACGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15706802 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15706867 ACTGGCACGCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15706932 GCATCCCGTTTCTCTGGCCAGCATAGTGCCCGCCCGCTCGCCTGCCTGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG--CGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGG
* ** * * ** * *
15706997 GTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGATGTAGTAAGA
708 CTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
* * *
15707061 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTT-TCGCATCCCGCCCCTT-TGGCC-A
772 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGT-GCATCCTG-CCCTTCTGGCCGA
* * *
15707123 GCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
835 -CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15707183 -C-TA---AG---ATT----G-----GATCAGACC--A---AGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
15707226 CTCGGGCATGTGCTCGTGCCACTTTTTTCTTCGCCGGGGCTCCATCACCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* * * ** * *
15707291 ACCTAATCGGCAGCATTTCGGTTCCGACGATGGGGGGGCC--GGGGGTGTGCGCAAATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
15707354 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTGGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15707418 CCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15707483 GGAACACTTTTTTCAAACGATCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTGAATTTTTTTG
* * * * * * **
15707547 TGCGTGCCGAGAAAAATACAAGGATCACGTCCACCAAATTTGGGGCCAAAACTCTTGCCCAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAA
* * * ** *
15707612 ATTTTCAGAAATCTCGAAACCATAAAAAGTTTCCAAAATCATGAAAAATAAAAAACGAGTCGTCT
455 ATTTTAAAAAATCCCG-AACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
15707677 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15707742 ATTGGCACACAGGAATATGAAGATGTACCTAAACCCACCTATCGA-CCTATCGATCCACGGCTTG
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTG
* * * *
15707806 CGCATCTCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTCAT-GGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--CG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
15707870 GCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGC
707 GCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGG
* * * * *
15707934 ATCGGCAGCATGCAGAGGGGGACTCGGTCGATCCCCAGCTTGCGCATCCTGCCCTTCTGGCCGAC
771 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCTTCTGGCCGAC
* *
15707999 TGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
15708061 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG-GAGGTTGCGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG-GGTTGCGGCAGCACATGCTGG
* ** *
15708125 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCCACGGGGCACCATCACCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAG
* ** * *
15708190 AACTTGACCGGCGGCATTATGGTTCCGACGAT--------CGGGGGGGCGTACGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
15708247 CGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15708312 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
15708377 GGTGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTCAGTTTGTAGCTGAATTTTTGTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTG
* * **
15708442 TGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGACCCAAAACTCCTTTC-GAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCTGAAAA
* * * * **
15708506 AATTTTAAGAAATCCCAAACCACAAAAAG-TTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAA-TCATGAAAAATAGAAAACGAGTCGTC
* *
15708570 TTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15708635 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** *
15708700 TGCATCCCGTCTCTCTGGCCGATGTAGTGTCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-C-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
15708765 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
711 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACC
15708807 ATGGGTTACG
Statistics
Matches: 3753, Mismatches: 461, Indels: 191
0.85 0.10 0.04
Matches are distributed among these distances:
867 60 0.02
870 2 0.00
872 9 0.00
873 6 0.00
874 368 0.10
875 254 0.07
876 5 0.00
877 12 0.00
878 31 0.01
879 4 0.00
880 2 0.00
881 3 0.00
883 8 0.00
884 41 0.01
885 449 0.12
886 3 0.00
887 3 0.00
888 1 0.00
889 7 0.00
890 19 0.01
891 50 0.01
892 8 0.00
893 176 0.05
894 475 0.13
895 252 0.07
896 548 0.15
897 61 0.02
898 453 0.12
899 75 0.02
900 368 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAA
TTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCTTCTGGCCGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15708071 original size:26 final size:26
Alignment explanation
Indices: 15708035--15708087 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15708025 GTTGACTTAG
15708035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15708061 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15708087 G
1 G
15708088 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15709677 original size:26 final size:26
Alignment explanation
Indices: 15709641--15709693 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15709631 GTTGACTTAG
*
15709641 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15709667 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15709693 G
1 G
15709694 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15710582 original size:26 final size:26
Alignment explanation
Indices: 15710546--15710598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15710536 GTTGACTTAG
15710546 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15710572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15710598 G
1 G
15710599 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15710904 original size:19 final size:19
Alignment explanation
Indices: 15710880--15710924 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
15710870 AAAGTGTCTG
15710880 AAATGGGGACACTTTTTCC
1 AAATGGGGACACTTTTTCC
15710899 AAATGGGGACACTTTTTCC
1 AAATGGGGACACTTTTTCC
15710918 AAATGGG
1 AAATGGG
15710925 CACAAAATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (19 bp):
AAATGGGGACACTTTTTCC
Found at i:15711068 original size:27 final size:24
Alignment explanation
Indices: 15711013--15711069 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 24
15711003 AAGTTTGGGG
*
15711013 CAAAAAATCCATCCGAAAAAATTT
1 CAAAAAATCCAACCGAAAAAATTT
* *
15711037 AAAAAAATCCCAAACCGTAAAAAGTTT
1 CAAAAAAT-CC-AACCG-AAAAAATTT
15711064 CAAAAA
1 CAAAAA
15711070 TCATGAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 7 0.27
25 2 0.08
26 4 0.15
27 13 0.50
ACGTcount: A:0.58, C:0.19, G:0.05, T:0.18
Consensus pattern (24 bp):
CAAAAAATCCAACCGAAAAAATTT
Found at i:15711485 original size:26 final size:26
Alignment explanation
Indices: 15711448--15711500 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15711438 GTTGACTTAG
*
15711448 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15711474 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15711500 G
1 G
15711501 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15712377 original size:26 final size:26
Alignment explanation
Indices: 15712340--15712392 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15712330 GTTGACTTAG
15712340 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15712366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15712392 G
1 G
15712393 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15714179 original size:26 final size:26
Alignment explanation
Indices: 15714143--15714195 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15714133 GTTGACTTAG
15714143 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15714169 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15714195 G
1 G
15714196 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15714624 original size:903 final size:901
Alignment explanation
Indices: 15708767--15715071 Score: 7945
Period size: 903 Copynumber: 7.0 Consensus size: 901
15708757 GTTGGCTTAG
* * *
15708767 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC-ATGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA-GGGTTGCGGCAGCACATGCTGG
* * * * * *
15708831 GTTGGGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCACCGACGGAGCATTGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCAGAG
* * * * * *
15708896 AACCTGACCGGCGTCATTGGGGTTCCGGCGATCAGAGGGGTC-GGGGGGTGTGCGCAGAGGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGGCGGGGGGGTGTGCGCACATGATGT
* * * * **
15708960 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTACCCCTTATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
15709025 CACCCCTTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15709090 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCT-AACTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * *
15709154 TGTG-ATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCTTATC-GAA
387 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCAGAA
* ** * *
15709217 AAAATTTTAAAAAATCCAGAATC-GTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
451 AAAATTTTAAAAAATCCCGAA-CAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
* * *
15709281 TCTTGCCATGAAA-GTCACGTGAAGGCTTAAGGGACCACTGTATGACTTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15709345 GGCTTTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
15709410 TGCACATCCCGTCACTCTGG-CAAGCGTAGTGCCTCCCCGCCCGTCCGCCCGCTCGTTTCGTCGG
645 TGCGCATCCCGTCTCTCAGGCCGA-CGTAGTGCC-CACCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
15709474 TT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACG-GACTGAGGGTTGCAGTAGC
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGCAGCAGC
* ** * * * ** * *
15709537 AGGATCGACAGCACATAGAGAGGGACCTGGCCAATCCCCGGCTTGCGCATCCTGCCACTCTGGCC
773 AGGATCGGCAGCATGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * ** *
15709602 GGTTGAGTGCCCACACGCTCGTTTAATGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCTAA
838 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
* * * *
15709667 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15709732 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCAGAGA
* * * * * * *
15709797 ACCTGTCCGACGACATTTGGGTTTCGACGATCGGGGGGGGCCGGGGGGGTGTGCACAGATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGG-CGGGGGGGTGTGCGCACATGATGT
* * *
15709862 TCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
15709927 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTATCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*** * *
15709992 TGGGGATTTTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
15710057 ATGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTTC-GAAA
388 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAGAAA
* * * * * *
15710121 AAATTTTAAAAACTCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAATTAGAAAATGAGTCTTC
452 AAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15710186 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15710251 CATTGGCATGCATAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15710316 CGGATCCCGCCTCTCTA-GCC-AGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
647 CGCATCCCGTCTCTC-AGGCCGA-CGTAGTGCCCA-CCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* **
15710379 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCG-GACTAAGGGTTGC-GACAGC
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGCAG-CAGC
** * * *
15710442 AGGATCAACAGCACGTAGAGGGGGACCCGA-TCGATCCTCGGCTTGCGCATCCCACCCCTCTGGC
773 AGGATCGGCAGCATGTAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
15710506 CGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
837 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTA
15710571 A
901 A
* * *
15710572 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
15710637 CTTGGGCATGTGCTGGTGTCGCATTTTT-TTCACCGGGGCACCAT--C---GC-T-G---GAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGTCAGAGAA
*
15710691 CCTGACCGACGGCATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGC
* * **
15710756 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTATCAAACCTTGAGAACTCAC-
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
15710820 CCCCCTTATAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15710885 GGGACACTTTTTCCAAATGGGGACACTTTTTCCAAATGGGCACAAAATCTTGTACACTTCGAGTT
325 GGGACA-------C---T--------TTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
15710950 TTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAACGATCACGTCTACCAAGTTTGGGGCA
371 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * * **
15711015 AAAAATCCATCCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
436 AAAACTCCTTCAGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAA
* * *
15711080 TAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAGTTA
501 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * ** * * *
15711145 CAAGCAATAAAAATGGCATTGCCACACAGAAATATGAAGGTGTACCTAAACCCACCTATCACCCT
566 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
15711210 ATCAATCCACGGCTTGTGCATCCCGCCTCTCTGGTCGGCGTAGT-------GCCCGCCCGCCCGC
631 ATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGCCGACGTAGTGCCCACCGCCCGCCCGCCCGC
* * *
15711268 TCGTTTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAG-CTGAG
696 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAG
* * * * ** * *
15711332 GGTTACAGCAGTAAGATCGGCAGCTTACAGAGGGGGACCCGACCGATCACCC-GCTTGCGCATTC
761 GGTTGCAGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGACTGATC-CCCGGCTTGCGCATCC
* * * ** *
15711396 CGTCGCTCTGGCCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
825 CGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTC
*
15711461 ATTCTCAGTCTAA
889 ATTCCCAGTCTAA
* * *
15711474 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
15711539 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCTTCAGAGGTGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGTCAGAGA
* * *
15711604 ACCTGACCGACGGCATTGGGGTTCTGGTGATCGGGGGGGCGGGGGGGTGTGTGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* *
15711669 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCAACAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
15711734 CCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15711799 GGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTCT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * *
15711864 GCATGCCAAAAAAAATAAAAGGATCACGTCTA-CAAGTTTGGGG--AAAAATCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAA
* * * * * * * *
15711926 TTTAAAAAAATCACAAACCGTAAAAAGTTTTGAAAATCGTGCAAAATAAAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15711991 CCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15712056 TGGCA-CCTAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
585 TGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
15712120 CATCCCGTCTCT-ATGGCCGACGTAGT-------GCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
649 CATCCCGTCTCTCA-GGCCGACGTAGTGCCCACCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * ** * *
15712177 TTAGGCATACAGAGTTCAATCCCACTGTAGGATCAGACCGA-AAGGAGGGTTGCGGTAGCAGGAT
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGCAGCAGCAGGAT
* * * * * * *
15712241 CGGTAGCACGTAGAGGGGGACCCGGCTGATCCCCGGCTTACGTATCCCGCCCCTCTGGCTGACTG
778 CGGCAGCATGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* **
15712306 AGTGCCTGCACGCTCGTTTCGACGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
* ** * * *
15712366 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGCGGGCTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15712431 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCAGAGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGTCAGAGA
* *
15712496 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTG
* *
15712561 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
15712626 ATCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15712691 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGCATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* *
15712756 TGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTCGGGGCCAAATA-TCCTTCTA-AAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTC-AGAAA
* * *
15712819 AAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTTAAAATCGTGAAAAATAGAAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
15712884 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15712949 CATTGGCATGCAGAAATATAAAGATGTGCCTAAACTCACCTACCACCCTATCGTTCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
15713014 CGCATCCTGTCTCTCAGGTCGGTGTAGTGCCCGACCGCCCGCCCGCCCGCTCATTTCGTCGGTTG
647 CGCATCCCGTCTCTCAGGCCGACGTAGTGCCC-ACCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
15713079 GCTTAGGCATACAGAGTTCTTTCCCAGTCTAAGATCAGA-CCAGATCGAGGGTTGC-GACAGCAG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGCAG-CAGCAG
* * * * * * * *
15713142 GACCGGCAGCATGCA-AAGGGGAACCGACCGATCCCTGGCTTGGGCATCCCACCCCT-TGGGCCG
775 GATCGGCAGCATGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCG
*
15713205 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGAGTTCAATT-CCAGTCAA
839 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC--GAGTTC-ATTCCCAGTC--
*
15713269 AAA
899 TAA
* * * * * * *
15713272 CACATA-AGAGTTCA-TCCCAGTCTAAGATC-AAT-GGACCGA-GCTTACGACAGTACAATGCT-
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC-ATGCTG
* * * * * * *
15713331 GGCTCGGGCAT-TGCTGCAT--CGCATTTTGCTTCGTC-GTGCACTATTGTCGAAAGCATCATCA
64 GGCTCGGGCATGTGCTG-GTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CG-GAGCATCGTCA
* ** ** * ** * *
15713392 GAGAACCTGATCGGTGGCATTTTGTTTCCGATGATCGGGTGGGCCGGGGGGTGTGCGCACATGAT
126 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGAT
* * * * *
15713457 GTGCAATGGTTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCTTCAAAACTCAAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
15713522 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT-TCG
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G
* *
15713586 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTGGCTGAATTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTT
* * * *
15713650 TTTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAGGTTCGGGGCCAAAACTCCTTTCA
384 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCA
* *
15713715 -AAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGT
448 GAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
* *
15713779 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATTAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
15713844 ATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACTCACCTACCACTCTATCGATCCACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * **
15713909 CTTGCGCATCCCGTCACTCAGGCCGATGTAGTGCCCGATCGCCCGACCGCCCATTCGTTTCGTCG
643 CTTGCGCATCCCGTCTCTCAGGCCGACGTAGTGCCC-ACCGCCCGCCCGCCCGCTCGTTTCGTCG
*
15713974 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGAG-CCGAGGGTTGCAGCAG
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGCAGCAG
* ** ** *
15714038 CAGAATCGATAGCATGTAGAGGGGGACCCGACTGATCCCCCACTTGTGCATCCCGCCCCTCTGGC
772 CAGGATCGGCAGCATGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
** * *
15714103 CAACTGAGTGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
837 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTA
15714168 A
901 A
* * *
15714169 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15714234 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCGTTGGAGCATCGTCGGAGT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCAGAGA
** *
15714299 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTTGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
*
15714364 GATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
15714429 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15714494 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * *
15714559 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTCGGGGCCAAAACTCCTTCAGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAA
* * * *
15714624 TTTTAAAAAATCCCGAATAATAAAAAGTTTTGAAAATCCTGAAAAATAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15714689 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15714754 TGCCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * *
15714819 ATCCCGTCTCTCAGGCCGGTGTAGTGCCCGACCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCAGGCCGACGTAGTGCCC-ACCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * * *
15714884 TAGGCATACGGAGTTGATTCCTAGTCTAAGATC-GAACCAGTCCGAGAGTTGCGGTAGCAAGATC
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGCAGCAGCAGGATC
* * * * ** * *
15714948 GGCAGCATGCAAAGGGGGA-TCGACTGATGCTTGGCTTAG-GCATCCTGCCCCTTTGGCCGGCTG
779 GGCAGCATGTAGAGGGGGACCCGACTGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCCGGCTG
15715011 A-TCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
843 AGT-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
15715071 G
1 G
15715072 ATCGAACCAG
Statistics
Matches: 4738, Mismatches: 553, Indels: 226
0.86 0.10 0.04
Matches are distributed among these distances:
891 69 0.01
892 633 0.13
893 272 0.06
894 21 0.00
895 78 0.02
896 219 0.05
897 13 0.00
898 23 0.00
899 573 0.12
900 299 0.06
901 33 0.01
902 593 0.13
903 845 0.18
904 289 0.06
905 268 0.06
906 10 0.00
907 5 0.00
909 9 0.00
910 296 0.06
911 1 0.00
913 83 0.02
914 106 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGTCAGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAAT
TTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCAGGCCGACGTAGTGCCCACCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGCAGCAGCAGGATCGG
CAGCATGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGT
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAA
Found at i:15714654 original size:27 final size:26
Alignment explanation
Indices: 15714618--15714676 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
15714608 ACTCCTTCAG
*
15714618 AAAAAATTTTAAAAAATCCCGAATAAT
1 AAAAAATTTT-AAAAATCCCGAAAAAT
* * *
15714645 AAAAAGTTTTGAAAATCCTGAAAAAT
1 AAAAAATTTTAAAAATCCCGAAAAAT
15714671 AAAAAA
1 AAAAAA
15714677 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.61, C:0.08, G:0.07, T:0.24
Consensus pattern (26 bp):
AAAAAATTTTAAAAATCCCGAAAAAT
Done.