Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 87 of 131
Found at i:15715148 original size:158 final size:158
Alignment explanation
Indices: 15714855--15715377 Score: 895
Period size: 158 Copynumber: 3.3 Consensus size: 158
15714845 CCCGACCACC
* * * * *
15714855 CGCCCGTC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTGATTCCTAGTCTAAGATCGA
1 CGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGA
* * * *
15714919 ACCAGTCCGAGAGTTGCGGTAGCAAGATCGGCAGCATGCAAAGGGGGATCGACTGATGCTTGGCT
65 ACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAAAGGGGGACCGACTGATCCTTGGCT
*
15714984 TAGGCATCCTGCCCCTTTGGCCGGCTGAT
130 TGGGCATCCTGCCCCTTTGGCCGGCTGAT
15715013 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGAA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGAA
*
15715078 CCAGACTGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAAAGGGGGACCGACTGATCCTTGGCTT
66 CCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAAAGGGGGACCGACTGATCCTTGGCTT
*
15715143 GGGCATCCTGCCCCTTTGGCCGGCAGAT
131 GGGCATCCTGCCCCTTTGGCCGGCTGAT
* * *
15715171 CGTCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGAA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGAA
15715236 CCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAAAGGGGGACCGACTGATCCTTGGCTT
66 CCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAAAGGGGGACCGACTGATCCTTGGCTT
15715301 GGGCATCCTGCCCCTTTGGCCGGCTGAT
131 GGGCATCCTGCCCCTTTGGCCGGCTGAT
15715329 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTC
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTC
15715378 AGCACATCCT
Statistics
Matches: 344, Mismatches: 20, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
157 1 0.00
158 343 1.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGAA
CCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAAAGGGGGACCGACTGATCCTTGGCTT
GGGCATCCTGCCCCTTTGGCCGGCTGAT
Found at i:15716238 original size:26 final size:26
Alignment explanation
Indices: 15716202--15716280 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
15716192 GTTCACTTAG
15716202 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15716228 GCATAAGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15716254 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15716280 G
1 G
15716281 ATCGAATCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15719119 original size:903 final size:892
Alignment explanation
Indices: 15716976--15720338 Score: 4504
Period size: 886 Copynumber: 3.8 Consensus size: 892
15716966 GGCTTAGGCG
* * *
15716976 TACGGAGTTCATTCCCAGTCTAAGATCGCATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCG-TAGCACATGCTGGGCTC
** * * ** *
15717041 GGGCATGTGCTATTGCCATAATTTTCTTTATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
64 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* *
15717106 TGACCGACGGTATTGGGGTTCTGACGATC--GGGGCAGCCGGGGGGTGTGCGCACATGATGTGCG
129 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCAG--GGGGGGTGTGCGCACATGATGTGCG
* *
15717169 ATGGTTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
15717233 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
15717298 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
15717363 CATGCCAACAAAAATACAGGGATCACGCCAACCAAGTTT-GGGCCTAAAACTCCCTT-GGAAAAA
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACT-CCTTCCGAAAAA
* ** * * *
15717426 ATTTAAAAAAATCTTGAACCGTAAAAAGTTCCAAAAATTGTGAAAAATAGAAAACAAGTCGTCTT
450 ATTTTAAAAAATCCCGAA-CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
** *
15717491 GCCATGAAACTTCACGTGAAGGCTTAAGAAACCATTGTATAAATTTACAAGCCATAAAAATGGTA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCA
*
15717556 TTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
579 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * * * *
15717621 CATTCTGTCTCTCTAGCCGA--TAGTGCGCGCCTG-CCGCCTGCCCACTCATTTCGTCAGTTGGC
644 CATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCT-CCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
15717683 TTAGGCATACGAAGTTCATTTCCAATCTAAGATTAGACTGGACCGAAGGTT-GC--GG-C-AG-A
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAGCAAGGACTGGCA
* * *
15717742 ACA--CAGAGGGGGACCCGACGATCCCCGACTGGCGCATCCCGCCCCTCTGGCTGACTGAGCGCC
773 GCATGCAGAGGGGGACCCGACGATCCCCGA-TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * * *
15717805 CACACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCATACTCTACGCA
837 CGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC-CAGTCTAAGCA
* * *
15717862 TACGGAGTTCATTCCCAGTCTAAGATCGGACAGACTGAGGGTTGCG-ACCGCACATGCCGTGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGTA--GCACATGCTGGGCTC
* * * * *
15717926 AGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGACAACC
64 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * * * *
15717991 TGACCGGCGACATTGGGGTTCCGCCGATCGGGGGGCCA-GGGGGTTGTGCGCACATGATGTACAA
129 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CAGGGGGGGTGTGCGCACATGATGTGCGA
15718055 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
15718120 CCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
258 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
15718185 GATACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTCTTTTTG
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT-TTTGTG
* * *
15718249 CATGCCAAAAAAAATAC-AGGAATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAA
387 CATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
15718313 TTTTAAAAAATCCCGAATCATAAAAATTTTAAAAAATTATGAAAAATAGAAAATGAGTCGTCTTG
451 TTTTAAAAAATCCCGAA-CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
* *
15718378 CCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCAT
* * * *
15718443 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTCGCAC
580 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
15718508 ATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCATCGGTTAGCT
645 ATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCGCCCG-CCTCCCGCTCGTTTCGTCGGTTGGCT
*
15718573 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAAGACAGTAGGACTG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-AG-CA--AGGACTG
*
15718638 GCAGCATGCAGAGGGGGACCCGATCGATCCCCAGTTTGCGCATCCCGCCCCTCTGGCCGACTGAG
770 GCAGCATGCAGAGGGGGACCCGA-CGATCCCC-GATTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * **
15718703 CGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTGCCAGTCTAAGTG
833 CGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCA
*
15718764 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGC-GTAGCACATGCTGGGCTC
* * *
15718829 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGTGCATCGTCGGAGAACC
64 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* *
15718894 TGACCGATGGCATTGGGGTTCCGACGATCGGAGGGGCAGGGGGGGTGTGCACACATGATGTGCGA
129 TGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCAGGGGGGGTGTGCGCACATGATGTGCGA
* *
15718959 TGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAACCCTCAAGAACTCTCACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * * *
15719023 CCCTTAAAGAGCATTTCAGATTTTATAGGTTTACTGTCAGTAGCCATTAAAGTGTCTAAAATGGG
258 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
15719088 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCAGAATGTTTTTATGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* * **
15719153 ATGCCAACAGAAATACAAGGATCAC-TCTACCAAGTTTGGAGCTGAAACTCCTTCCGAAAAAATT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
15719217 TTAAAAAAAATCTCGAACTGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
453 TT--AAAAAATCCCGAAC-GTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
15719282 CCAAGAAACTTCATGTTAAGGCTTAAGGGACCATTGGATAAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCAT
* *
15719347 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
580 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
15719412 ATCCCATCTCTCTAGCCGACGTAGT----GCCCGCCCG-CT--CGCTCGTTTCGTTGGTTGGCTT
645 ATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCTCCCGCTCGTTTCGTCGGTTGGCTT
*
15719470 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTACCAGGA-TCG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTA--G--CAAGGACT-G
* * * * * * * * *** *
15719534 ACAGTATGCAGAAGTGGACCCGACAAATCCTCGGATTGCTCATCCTGCCCCTCTCATCGATTGAG
770 GCAGCATGCAGAGGGGGACCCGAC-GATCC-CCGATTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * * *
15719599 TGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
833 CGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-TCCAGTCTAAGCA
* * * * *
15719660 TACGAAGTTCATTCCTAGCCTAAGATCGGACAGGACCGCGGGTTACGGTAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACA-GACCGAGGGTTGC-GTAGCACATGCTGGGCTC
* * * *
15719725 GAGCACGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTTGGAGCATCGTCGGAGAACC
64 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * * * * *
15719790 TTACCGACGGTATTGGGGTTCTGGCGATTGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCTA
129 TGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCAGGGGGGGTGTGCGCACATGATGTGCGA
* * * *
15719854 TGGGTGCAGGTACATGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-C
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * *
15719918 CCCTTAAAGAGCGTTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATTGG
258 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
15719983 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTGTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
***
15720048 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGGGAAACTCCTTCCGAAAAAATT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
15720113 TTGAAAAATCCCGAACCTCAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
453 TTAAAAAATCCCGAACGT-AAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCC
*
15720178 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTG
* * *
15720243 GCACGTAGAAATATGAAGATGTGCGTAAACCCACCTACCACCTTATCGATCCACGACTTGCGCAT
582 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
15720308 CCCGTCTCTCTTGCCGGCGTAGTGCCCGCCC
647 CCCATCTCTCTAGCCGACGTAGTGCCCGCCC
15720339 ACCTGCCCGA
Statistics
Matches: 2182, Mismatches: 240, Indels: 98
0.87 0.10 0.04
Matches are distributed among these distances:
883 1 0.00
885 153 0.07
886 424 0.19
887 9 0.00
888 13 0.01
889 64 0.03
890 3 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 194 0.09
895 198 0.09
896 384 0.18
897 6 0.00
898 9 0.00
899 3 0.00
900 9 0.00
901 15 0.01
902 151 0.07
903 285 0.13
904 257 0.12
905 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (892 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGTAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCAGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
TTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCAC
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
TCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAGCAAGGACTGGCAGCATGCAG
AGGGGGACCCGACGATCCCCGATTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACACTC
ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGCA
Found at i:15719682 original size:26 final size:26
Alignment explanation
Indices: 15719631--15719683 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15719621 GTTGACTTAG
* *
15719631 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
* *
15719657 GCATACGAAGTTCATTCCTAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
15719683 G
1 G
15719684 ATCGGACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:15720958 original size:649 final size:650
Alignment explanation
Indices: 15719709--15720987 Score: 2071
Period size: 649 Copynumber: 2.0 Consensus size: 650
15719699 GGGTTACGGT
* *** **
15719709 AGCACATGCTGGGCTCGAGCACGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTTGGA
1 AGCACATACTGGGCTCGAGCACGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCAGGA
* * * * * *
15719774 GCATCGTCGGAGAACCTTACCGACGGTATTGGGGTTCTGGCGATTGGGGGGGCCGGGGGGTGTGC
66 GCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGC
* *
15719839 GCACATGATGTGCTATGGGTGCAGGTACATGGCCCTTATATTTGCCCCCTATCCCTCATCAAACC
131 GCACATGATGTGCGATGGGTGCAGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
15719904 TCGAGAACTCACACCCCTTAAAGAGCGTTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
196 TCGAGAACTCACACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
15719969 GTGTCCGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
261 GTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCT
15720034 GAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGGGAAACTC
326 GAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGGGAAACTC
*
15720099 CTTCCGAAAAAATTTTGAAAAATCCCGAACCTCAAAAAGGTTCAAAAATCATGAAAAATAGAAAA
391 CTTCCGAAAAAATTTTCAAAAATCCCGAACCTCAAAAAGGTTCAAAAATCATGAAAAATAGAAAA
15720164 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
456 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
15720229 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCGTAAACCCACCTACCACCTTATCGATC
521 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
15720294 CACGACTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCACCTGCCCGAGGGTTGCAGC
586 CACGACTTACGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCACCTGCCCGAGGGTTGCAGC
* * *
15720359 AGCACATACTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGG
1 AGCACATACTGGGCTCGAGCACGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG-CAGG
* *
15720424 -GCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCAGATGATCGGGGGGGCCGGGGGGTGTG
65 AGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTG
* * * * *
15720488 TGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCAGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
15720553 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
195 CTCGAGAACTCACA-CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
15720618 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAG
259 AAGTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
15720683 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTT-GGGGTGAAAC
324 CTGAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGGGAAAC
** *
15720747 TCCTTCCG-AAAAATTTTCAAAAATCTTGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGA
389 TCCTTCCGAAAAAATTTTCAAAAATCCCGAACC-TCAAAAAGGTTCAAAAATCATGAAAAATAGA
* *
15720810 AAACGAGTCATCTTGGCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
453 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
15720875 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
518 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
15720940 ATCCACGGCTTACGCATCCCTTCTCTCTGGCCGACGTAATGCCTGCCC
583 ATCCACGACTTACGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCC
15720988 GCCCGCTCGT
Statistics
Matches: 578, Mismatches: 48, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
649 216 0.37
650 199 0.34
651 163 0.28
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (650 bp):
AGCACATACTGGGCTCGAGCACGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCAGGA
GCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCAGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGGGAAACTC
CTTCCGAAAAAATTTTCAAAAATCCCGAACCTCAAAAAGGTTCAAAAATCATGAAAAATAGAAAA
CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGACTTACGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCACCTGCCCGAGGGTTGCAGC
Found at i:15721204 original size:26 final size:26
Alignment explanation
Indices: 15721174--15721224 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15721164 GTTGACTTAG
15721174 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15721200 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15721225 TGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15722342 original size:903 final size:891
Alignment explanation
Indices: 15720367--15722392 Score: 2995
Period size: 903 Copynumber: 2.3 Consensus size: 891
15720357 GCAGCACATA
* * * **
15720367 CTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGG-GCATCAT
1 CTGGGC-TCGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCC-GGAGCATCGC
* *
15720431 CGGAGAACCTGACCGGCGGCATTGGGGTTCAGATGATCGGGGGGGCCGGGGGGTGTGT-GCACAT
64 CGGAGAACCTGACCGGCGGCATTGGGTTTC-GACGATCGGGGGGGCCGGGGGGTGT-TCGCACAT
* *
15720495 GATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGA
127 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
15720560 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
192 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCACTAAAGTGTC
*
15720625 TGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
257 TGAAATGGGGACACTTTTTTCAAATGGCCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATT
* ** *
15720690 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGTGAAACTCCTTCCG
322 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCG
**
15720755 AAAAATTTTCAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
387 AAAAATTTTCAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
* * *
15720820 TCTTGGCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
452 TCTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
15720885 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
517 GGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15720950 TACGCATCCCTTCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
582 TACGCATCCCATCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCTCGTTTCATCGATTGGCTTAG
* * ** *
15721015 GCATACGGAATTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGTGGTAGCAGGATCGACA
647 GCATACGGAATTCATTCCCAGTCTAAGATCAGACCAGAACAAGGGTTACGGCAGCAGGATCGACA
* * * * * *
15721080 ACACGCAGAAGGGGACCCGACCGATCCCCGGCTTGAGCATCCCGTCCCTCTGGCCGGCTGAGCGC
712 ACACACAAAAGAGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGACTGAGCAC
*
15721145 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
777 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
15721210 TTCATTCCCAGTCTATGATCGGACCGGATCGAGGTTTACGACTGCACATG
842 TTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTGACGACTGCAAATG
* *
15721260 CTGGGCTCCGGCATGTACTGGTGCCATATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC
1 CTGGGCT-CGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCC
* * * ** * * *
15721325 AGAGAACCTGATCGGCGTCATTGGGGTCCCGACGATTGGGGGAGCCGGGGGGTGTGCGCACATGA
65 GGAGAACCTGACCGGCGGCATT-GGGTTTCGACGATCGGGGGGGCCGGGGGGTGTTCGCACATGA
* *
15721390 TGTACGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
129 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
15721455 TCACACCCCCTTAAAGAGCATTTGACATTTTACAGGCGTTGCT-CTCAGTAGCCACTAAAGTGTC
194 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-GTTGCTGC-CAGTAGCCACTAAAGTGTC
*
15721519 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATT
257 TGAAATGGGGACACTTTTTTCAAATGGCCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATT
15721584 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCG
322 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCG
* *
15721649 AAAATATTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTC
387 AAAA-ATTTTCAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
15721714 GTCTTGCCATGGAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
451 ATCTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
15721779 TGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
516 TGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * *
15721844 TTGCGCATCCCATCTCTCTGGCCGGA-GTGGTGCCCGCCCGTCCGTCCGCCCGCTTGTTTCATCG
581 TTACGCATCCCATCTCTCTGGCC-GACGTAAT----G-CC-T--GCCCGCCCGCTCGTTTCATCG
* * *
15721908 ATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GAAACAAGGGTTACGGCAG
637 ATTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCAG-AACAAGGGTTACGGCAG
* * * ** *
15721972 CAGGATCGGCAGCACACAAAAGAGGACCTGGTCGATCCCCGGCTTGGGCATCCCGCCCCTCTGGC
701 CAGGATCGACAACACACAAAAGAGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGC
* * *
15722037 CGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCC-GTCTA
766 CGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
**
15722101 AGCATACGGAGTTCATTCTTAGTCTAGGATCAGACCGGACCGAGGGTGACGA-TAGCAAATG
831 AGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTGACGACT-GCAAATG
* ** *
15722162 CTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCC
1 CTGGGCTCG-GCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCC
* *
15722227 GGAGAACCTGACCGACGGCATTGAGGTTTCGACGATCGGGGGGGTCGAGGGGGTGTTCGCACATG
65 GGAGAACCTGACCGGCGGCATTG-GGTTTCGACGATCGGGGGGGCCG-GGGGGTGTTCGCACATG
* *
15722292 ATGTGCGATGGGTGCTGGTATTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
128 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
15722357 CTCACACCCTCTTAAAGAGCATTTGAGATTTTACAG
193 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
15722393 ATTTTACAAG
Statistics
Matches: 1010, Mismatches: 102, Indels: 32
0.88 0.09 0.03
Matches are distributed among these distances:
892 3 0.00
893 199 0.20
894 155 0.15
895 204 0.20
896 2 0.00
899 1 0.00
900 2 0.00
901 5 0.00
902 149 0.15
903 290 0.29
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (891 bp):
CTGGGCTCGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCG
GAGAACCTGACCGGCGGCATTGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTTCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCACTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGCCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCGAAAA
ATTTTCAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
CATCCCATCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCAT
ACGGAATTCATTCCCAGTCTAAGATCAGACCAGAACAAGGGTTACGGCAGCAGGATCGACAACAC
ACAAAAGAGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGACTGAGCACCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAGGATCAGACCGGACCGAGGGTGACGACTGCAAATG
Found at i:15722751 original size:26 final size:26
Alignment explanation
Indices: 15722714--15722766 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15722704 GTTGACTTAG
*
15722714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15722740 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15722766 G
1 G
15722767 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15722977 original size:637 final size:632
Alignment explanation
Indices: 15721762--15723029 Score: 1842
Period size: 637 Copynumber: 2.0 Consensus size: 632
15721752 ATTGTATGAA
*
15721762 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCA
* *
15721827 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGAGTGGTGCCCGCCCGTCCGTCCG
66 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGAGTGCTGCCCGCCCGTCCGCCCG
* *
15721892 CCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAAA
131 CCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCCAAA
* * ** * * *
15721957 CAAGGGTTACGGCAGCAGGATCGGCAGCACACAAAAGAGGACCTGGTCGATCCCCGGCTTGGGCA
196 CAACGGTTACAGCAGCAGGATCGGCAGCACACAAAAGAGGACCCAGCCAATCCCCGGCTTGCGCA
** *
15722022 TCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGAAG
261 TCCCAACCCTCTGGCCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAG
* ** * *
15722087 TTCATTCCCGTCTAAGCATACGGAGTTCATTCTTAGTCTAGGATCAGACCGGACCGAGGGTGACG
326 TTCATTCCCGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTGACG
* ** * *
15722152 ATAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCACCG
391 ACAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCG
* * * *
15722217 GAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTTCGACGATCGGGGGGGTCGAGGGGGTG
456 GAGCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCCGACAATC-AGGGGGTCGAGGGGGTG
* *
15722282 TTCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTAATATTGGCCCCCTATCCCTCATCAA
520 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAA
15722347 ACCTCGAGAACTCAC-ACCCTCTTAAAGAGCATTTGAGATTTTACAGAT
585 ACCTCGAGAACTCACTACCC-CTTAAAGAGCATTTGAGATTTTACAGAT
*
15722395 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCA
* *
15722460 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGAGTATTGCCTGCCCTCCCGTCCG
66 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGAG---TG-CTGCCCGCCCGTCCG
* *
15722525 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGATTTCATTCCTAGTCTAAGATCAGA-C
127 CCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC
* ** * ** * * *
15722589 CAAACTGACGGTTGTAGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCAGCCAATCCCCGGCTT
192 CAAAC-AACGGTTACAGCAGCAGGATCGGCAGCACACAAAAGAGGACCCAGCCAATCCCCGGCTT
* * * * *
15722654 GCGCATCCTAACCCTCTGGTCGGCTGAGCTCCCGGACGCTTGTTTCGTGGGTTGACTTAGGCATA
256 GCGCATCCCAACCCTCTGGCCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
* * *
15722719 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGG
321 CGAAGTTCATTCCC-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * *
15722784 GTTG-CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACC
385 G-TGACGACAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACC
** * *
15722848 ATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAAT-AGGGGGTCGAG
449 ATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCCGACAATCAGGGGGTCGA-
* * *
15722912 GGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCC
513 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCC
*
15722977 TCATCAAACCTCGAGAACTCACTTCCCCTTAAAGAGCATTTGAGATTTTACAG
578 TCATCAAACCTCGAGAACTCACTACCCCTTAAAGAGCATTTGAGATTTTACAG
15723030 GTTTGCTGCC
Statistics
Matches: 562, Mismatches: 64, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
633 106 0.19
636 16 0.03
637 293 0.52
638 145 0.26
639 2 0.00
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (632 bp):
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGAGTGCTGCCCGCCCGTCCGCCCG
CCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCCAAA
CAACGGTTACAGCAGCAGGATCGGCAGCACACAAAAGAGGACCCAGCCAATCCCCGGCTTGCGCA
TCCCAACCCTCTGGCCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAG
TTCATTCCCGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTGACG
ACAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCG
GAGCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCCGACAATCAGGGGGTCGAGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACTACCCCTTAAAGAGCATTTGAGATTTTACAGAT
Found at i:15724489 original size:26 final size:26
Alignment explanation
Indices: 15724459--15724511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15724449 GTTGACTTAG
*
15724459 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
*
15724485 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
15724511 G
1 G
15724512 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAATCTAA
Found at i:15725392 original size:26 final size:26
Alignment explanation
Indices: 15725356--15725408 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15725346 GTTGACTTAG
15725356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15725382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15725408 G
1 G
15725409 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15726278 original size:899 final size:897
Alignment explanation
Indices: 15723598--15729259 Score: 7306
Period size: 899 Copynumber: 6.4 Consensus size: 897
15723588 AGGCATACAA
*
15723598 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTC-ACAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CGGCAGCACATGCTGGGCTCGGGC
* * * * * * *
15723662 ATGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACGATCATCGGAGCATCACCGAAGAACTTGAC
65 ATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGAAGAACCTGAC
* * *
15723727 CGGCGACATTGGGGTTCCAGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATCATGTGCGATGGG
130 CGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
15723792 TCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
15723857 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
15723922 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
15723987 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CTAAACTCCTTCCAAAAAAATTTTCA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
15724051 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAACACGAGTCGTCTCGCCATGA
454 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
15724116 AACTTCATGCGAGGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGAAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
15724181 GCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * **
15724246 CCTCTCTGGCCGGCATAGTGCCCGCCCG--C-CCACTCGTTTCATCAATTGGCTTAGGCATACAG
649 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACAG
* * * *
15724308 AGTTCATTCCCTA-TCTAAGATCAGA-CTGGACCGAGGGTTCTGGTAGTAGGATCAACAGCACAC
714 AGTTCATTCCC-AGTCTAAGATCAGATC-AGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGC
* * ** * **
15724371 AGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGTGCCTCTAGCCGGCTGAGCGCCTACAC
777 AGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
15724436 GCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACCG
842 GCTCGTTTCGTGGG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
15724493 AGTTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * **
15724558 GGTGCTGGTGCCGCATTTTTCTTC-CCTGGGGCACCATCGTC-AGAGCATCGTCGAAGAACCTGA
66 TGTGCTGGTGCCGTATTTTTCTTCACC-GGGGCACCATCGTCGA-AGCATCACCGAAGAACCTGA
* * * * *
15724621 CCGGCAGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGCGTGCACGTGATGTGCGATGGG
129 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * **
15724685 TGCTGGTACTTGGCCTTTATATTGGCCCCCTCTCCCTTATCAAACCTTAAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
15724750 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15724815 ATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
15724880 CAACAAAAATACAAGGATTACATCTACCAAG-TTGGGACCAAAACTCCTTCCAAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
15724944 AAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATA-AGAAATGAGTCGTCTTGCCATG
454 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA-AAACGAGTCGTCTTGCCATG
*
15725008 AAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
15725073 CGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGAGCATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * * * *
15725138 GTCTCTCTAGTCGGTGCAGTGCCTGCCCTCCCGTCCGCTCATTTCGTCGATTGGCTTAGGCATAC
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * ** * *
15725203 GGAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGTGGCAACAAGATCGACAGCACAC
712 AGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGC
* ** ** * * * *
15725268 TGAGGGGGACCCGACCGATCCCC-AGCTTTTGGATCCCACCCCTCTGGCCGGTTGAGCGCCCGCC
777 AGAGGGGGACCCGGTCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
15725332 CGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
841 CGCTCGTTTCGTGGG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
** *
15725390 AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCACATGCAGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
15725455 TGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCAACAAAGAACCAGACC
66 TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGAAGAACCTGACC
* * * * *
15725520 GACGGCGTTGAGGTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGT
131 GGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * * *
15725585 GCTGATAGTTGGCCCTTATATTAGCCCCCTATCCATCATCAAACCCCGAGAACTCACACCCACTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
15725650 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
15725715 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA-CTTGAATTTTTTTGTGCATGC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGC
* *
15725779 CAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAC
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * *
15725844 AAAATCCCAAACC-CTAAAAAGTTTTGAAAATCATGAAAAATACAAAACGAGTCATCTTGCCATG
454 AAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
15725908 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
15725973 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
15726038 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTAGCATAGGCATAC
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * ** * *
15726103 AGAGTTCATTCTCAGTCTAAGATCAAATCAGACTGAGGGTTG-GGTAGTAGGATCGGTACCATGC
712 AGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGC
* * * * *
15726167 AGAGGGAGACCCGGTCGATCTCCGACTTACGCATCCCGCCCCTCCT-GTCGGCTGAGTGCCCGCA
777 AGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCGCA
** *
15726231 CGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTTCCAGTCTAAGCATACGG
841 CGCTCGTTTCGTGGG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** * *
15726289 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** ** * *
15726354 TGTGCTGATGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAA-CATCACCGGAGAACCTAAC
66 TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTC-GAAGCATCACCGAAGAACCTGAC
* *
15726418 CGGCGGCATTGGGGTTCCGGTGATCGGGTGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
130 CGGCGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
15726483 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
15726548 TAAAGAGCATTTGAAATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGATA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
15726613 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
15726678 CAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAAATTTTA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTA
* *
15726742 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
453 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
15726807 AAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCAT-AAAA----ATT---A
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
15726864 ---AG-----T-----TGTGCCTAAACCTACCTACCACCCTATCGGTCTACGGCTTGCGCATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
15726916 GTCTCTCTGGCCGGCGTAATGCCCACCCGCCAGCCGGCTCGTTTCGTCGGTTGGCTTAAGCATAC
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCTCGTTTCATCGGTTGGCTTAGGCATAC
* *
15726981 AGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGGTTGTGGTAGTAGGATC-AGCAGCACG
712 AGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGTAGGATCGA-CAGCACG
** * * * * *
15727045 CAGAGGGGGACCCGACCGATCCCTGACTTGCGCATCCCTCCCCTCTGGTCGGTTGAGCACCCGCA
776 CAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
15727110 CGCTCATTTCGT-GG-GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
841 CGCTCGTTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
15727165 AGATCATTCCCAGTTTAAGATCGGACAAGACCAAGGGTTAG-GGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-GCGGCAGCACATGCTGGGCTCGGGC
* ** *
15727229 ATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG-CCAGAGCATCGTCGGAGAACCTGA
65 ATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGA-AGCATCACCGAAGAACCTGA
* * * * * * *
15727293 CCGGTGACAATGGGGTTCCGGCAATCGGGGGGGCCGAGGGGGTGTGCACACATGATGTGCAATGG
129 CCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
** * * *
15727358 GTGCTGGTTTTTGGCCCTTATATTGGCCCCCTCTACCTCATCAATCCTCGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
15727423 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
15727488 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
15727553 CCGAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAAATTTT
388 CC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
15727617 AAAAAATTCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCAT
452 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
15727682 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
15727747 AGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT-GATCCACGGCTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
15727811 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGTTTAGG
647 CGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGG
* * * *
15727876 CATACGGAGTTCATTCCCAGTCTAAGAT-TGAATCAGATC-A----AG-GGT--T---A-CG---
707 CATACAGAGTTCATTCCCAGTCTAAGATCAG-ATCAGACCGAGGGTTGTGGTAGTAGGATCGACA
* * * * *
15727925 GCA-G-A-A-GGGTACCTGGTCGATCCCCGACTTGCGCATCCCGTCGCTCTGGCCGGCTGAGCTC
771 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
15727986 CCGCACGCTCATTTCGTGGG-G-CTTAGACATACGAAGTTCATTCCCAATCTAAGCATACGA
836 CCGCACGCTCGTTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
15728046 AGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
15728111 TGTGCTGGAGCCGCATTTTTCTTCACCAGGGCACCATCGTC---G-------G-AGAACCCGACC
66 TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGAAGAACCTGACC
** * ** * * * *
15728165 GATGGCAATGGGGTTTTGGCGATCATGGGGGCCGGGGTGGTGTGCACACATGATATGCGATGGGT
131 GGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
** * * *
15728230 GCTGGTTTTTGGACCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACCTCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
15728295 AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
15728360 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** * *
15728425 AACAAAAATACAAGGATCATGTCTAAGAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
15728490 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCATGAA
455 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
** *
15728555 ACTTCACGTGAAGGCTTAAGACACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGC-TC
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-
* * *
15728619 GTAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
15728684 TCTCTCTGGCCGGCGTAATGCCCGCCTG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-G
649 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACAG
* * * * ** * * * * *
15728745 AAGTTCATTCCCAGTGTAAAATCAGATCGGACCAAGGGTTGCAGCAGCAGGATCGAAAACACGTA
714 -AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCA
* * *
15728810 GAGGGGGACCCGGTCGATCCCCGACTTGCGTATCCCGCCCCTC-GGCCGGCTAAGTGCCCGCACG
778 GAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
15728874 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--
843 CTCGTTTCGTGGG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
** * * * *
15728926 AG---------A--C------C-G----GACCGAGGGTTATGGCAGCACTTGCTAGCCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
*** * * * * *
15728969 TGTGCTGGTGCC-TCATTTTTCTTCGTTGGGGCACCCTCGTCGGAGCATCGCCGGAGAAACTGAC
66 TGTGCTGGTGCCGT-ATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGAAGAACCTGAC
* * * *
15729033 CAGCAGCATTAGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGAG
130 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
**
15729097 TGCTGGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
15729161 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
15729226 CTTTTTTCAAATGGTCACAAAATCTTGTACACTT
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTT
15729260 AGGCATACAG
Statistics
Matches: 4187, Mismatches: 473, Indels: 242
0.85 0.10 0.05
Matches are distributed among these distances:
858 63 0.02
861 1 0.00
862 2 0.00
863 53 0.01
864 2 0.00
865 1 0.00
867 110 0.03
868 81 0.02
869 36 0.01
870 468 0.11
871 40 0.01
874 2 0.00
875 4 0.00
876 529 0.13
877 24 0.01
878 144 0.03
879 80 0.02
880 4 0.00
881 225 0.05
882 41 0.01
883 5 0.00
884 31 0.01
885 3 0.00
887 2 0.00
888 3 0.00
889 1 0.00
891 1 0.00
892 8 0.00
893 456 0.11
894 14 0.00
895 138 0.03
896 38 0.01
897 337 0.08
898 31 0.01
899 836 0.20
900 370 0.09
901 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGAAGAACCTGACC
GGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAG
TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGAG
GGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:15727161 original size:26 final size:26
Alignment explanation
Indices: 15727131--15727183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15727121 TGGGACTTAG
*
15727131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
15727157 GCATACGGAGATCATTCCCAGTTTAA
1 GCATACGGAGATCATTCCCAGTCTAA
15727183 G
1 G
15727184 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:15728043 original size:26 final size:26
Alignment explanation
Indices: 15728013--15728064 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15728003 GGGGCTTAGA
15728013 CATACGAAGTTCATTCCCAATCTAAG
1 CATACGAAGTTCATTCCCAATCTAAG
*
15728039 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAATCTAAG
15728065 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAATCTAAG
Found at i:15731545 original size:10 final size:10
Alignment explanation
Indices: 15731530--15731574 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
15731520 TAATCATTCA
15731530 TTTCTTTCTT
1 TTTCTTTCTT
*
15731540 TTTCTTTTTTT
1 TTTC-TTTCTT
*
15731551 TTTCTTTCAT
1 TTTCTTTCTT
15731561 TTTCTTTCTT
1 TTTCTTTCTT
15731571 TTTC
1 TTTC
15731575 CTTATTCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 21 0.70
11 9 0.30
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:15731554 original size:21 final size:21
Alignment explanation
Indices: 15731530--15731573 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
15731520 TAATCATTCA
* *
15731530 TTTCTTTCTTTTTCTTTTTTT
1 TTTCTTTCATTTTCTTTCTTT
15731551 TTTCTTTCATTTTCTTTCTTT
1 TTTCTTTCATTTTCTTTCTTT
15731572 TT
1 TT
15731574 CCTTATTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTCTTTCATTTTCTTTCTTT
Found at i:15732402 original size:13 final size:14
Alignment explanation
Indices: 15732386--15732414 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
15732376 CAACATAATC
15732386 TTAACACATC-AAA
1 TTAACACATCTAAA
15732399 TTAACACATCTAAA
1 TTAACACATCTAAA
15732413 TT
1 TT
15732415 CCGAAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (14 bp):
TTAACACATCTAAA
Found at i:15735347 original size:21 final size:21
Alignment explanation
Indices: 15735321--15735372 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
15735311 ATTTTTTAAA
15735321 AAAATAAAATCAAAATCAAGG
1 AAAATAAAATCAAAATCAAGG
15735342 AAAATAAAATCAAAATCAAGG
1 AAAATAAAATCAAAATCAAGG
15735363 AAAATAAAAT
1 AAAATAAAAT
15735373 TAAATACTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (21 bp):
AAAATAAAATCAAAATCAAGG
Found at i:15736329 original size:7 final size:7
Alignment explanation
Indices: 15736317--15736344 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
15736307 ATTTTTATAG
15736317 ATATTTT
1 ATATTTT
15736324 ATATTTT
1 ATATTTT
15736331 ATATTTT
1 ATATTTT
15736338 ATATTTT
1 ATATTTT
15736345 TTTTCTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
ATATTTT
Found at i:15738891 original size:33 final size:32
Alignment explanation
Indices: 15738777--15739024 Score: 132
Period size: 33 Copynumber: 7.8 Consensus size: 32
15738767 TTAGTGCAAA
* * *
15738777 TTTAAGCCCAGTTTAGCTGACTCCCAATAAAAT
1 TTTAAGCCCAATTTAGCTGGC-ACCAATAAAAT
** *
15738810 TTTAAGCCCAATTTAGCTAACACC--T--ATT
1 TTTAAGCCCAATTTAGCTGGCACCAATAAAAT
* * *
15738838 TTTAAGCCTAGTTTAGCTGGCTTCCAATAAAAT
1 TTTAAGCCCAATTTAGCTGGC-ACCAATAAAAT
* * **
15738871 TTTAAGCCCAGTTTATCTGGC-CCTTAAGGAAAT
1 TTTAAGCCCAATTTAGCTGGCACC--AATAAAAT
* * *
15738904 CTTAAGCCCAATTTAACTGGCACC-ATAAAAA
1 TTTAAGCCCAATTTAGCTGGCACCAATAAAAT
* * *
15738935 TTTAAGCCTAATTTATCTGGCACCCAATGTAAA-
1 TTTAAGCCCAATTTAGCTGGCA-CCAAT-AAAAT
* * * * * * *
15738968 TCTAAGCCTAGTTTAGCTAGCCCTCAACAAAAA
1 TTTAAGCCCAATTTAGCTGGCAC-CAATAAAAT
* *
15739001 TTTAAGCCCAATTTACCTAGCACC
1 TTTAAGCCCAATTTAGCTGGCACC
15739025 CATTTTTTAG
Statistics
Matches: 166, Mismatches: 36, Indels: 27
0.72 0.16 0.12
Matches are distributed among these distances:
28 19 0.11
29 2 0.01
30 1 0.01
31 26 0.16
32 9 0.05
33 104 0.63
34 5 0.03
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (32 bp):
TTTAAGCCCAATTTAGCTGGCACCAATAAAAT
Found at i:15738929 original size:191 final size:191
Alignment explanation
Indices: 15738724--15739202 Score: 470
Period size: 191 Copynumber: 2.5 Consensus size: 191
15738714 TTAGGCATAG
* *
15738724 TTTAAC-GAGCACCATAAAAATTTAAGCCTAGTTTATCTAGCATTTAGTGCAAATTTAAGCCCAG
1 TTTAACTG-GCACCATAAAAATTTAAGCCTAATTTATCTAGCATTTAATG-AAATTTAAGCCCAG
* * *
15738788 TTTAGCTGACTCC-CAATAAAATTTTAAGCCCAATTTAGCTAACACCTATTTTTAAGCCTAGTTT
64 TTTAGCTGACTCCTCAATAAAA-TTTAAGCCCAATTTACCTAACACCCATTTTTAAGCCCAGTTT
* * * * * *
15738852 AG-CTGGCTTCC-AATAAAATTTTAAGCCCAGTTTATCTGGCCCTTAAGGAAA-TCTTAAGCCCA
128 -GTCTGGC-CCCTAAGAAAATATTAAACCCAGTTTATCTAGCCCTTAAGAAAATTCTTAAGCCCA
15738914 A
191 A
* *** * *
15738915 TTTAACTGGCACCATAAAAATTTAAGCCTAATTTATCTGGCACCCAATGTAAATCTAAGCCTAGT
1 TTTAACTGGCACCATAAAAATTTAAGCCTAATTTATCTAGCATTTAATG-AAATTTAAGCCCAGT
* * *
15738980 TTAGCT-AGC-CCTCAACAAAAATTTAAGCCCAATTTACCTAGCACCCATTTTTTAGCCCAGTTT
65 TTAGCTGA-CTCCTCAA-TAAAATTTAAGCCCAATTTACCTAACACCCATTTTTAAGCCCAGTTT
* * * * *
15739043 GTTTGGCCCCTAAGGAAATATTAAACCCAGTTTATCTAGCCCTTAAGAAAATTTTTAAGCCTAG
128 GTCTGGCCCCTAAGAAAATATTAAACCCAGTTTATCTAGCCCTTAAGAAAATTCTTAAGCCCAA
** * * * * * * *
15739107 TTTATTTGGCCCCCAAAAAAAGATTTAATCCCATTTTAGCTAGCCTTTAATGAAATTTAAGCCCA
1 TTTAACTGG-CACC-ATAAAA-ATTTAAGCCTAATTTATCTAGCATTTAATGAAATTTAAGCCCA
* *
15739172 GCTTAGCTGGCTCCTC-ATGAAAATTTAAGCC
63 GTTTAGCTGACTCCTCAAT-AAAATTTAAGCC
15739203 TAGTTGATCT
Statistics
Matches: 231, Mismatches: 44, Indels: 23
0.78 0.15 0.08
Matches are distributed among these distances:
190 6 0.03
191 139 0.60
192 21 0.09
193 3 0.01
194 37 0.16
195 25 0.11
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.32
Consensus pattern (191 bp):
TTTAACTGGCACCATAAAAATTTAAGCCTAATTTATCTAGCATTTAATGAAATTTAAGCCCAGTT
TAGCTGACTCCTCAATAAAATTTAAGCCCAATTTACCTAACACCCATTTTTAAGCCCAGTTTGTC
TGGCCCCTAAGAAAATATTAAACCCAGTTTATCTAGCCCTTAAGAAAATTCTTAAGCCCAA
Found at i:15738948 original size:31 final size:31
Alignment explanation
Indices: 15738732--15738958 Score: 111
Period size: 33 Copynumber: 7.2 Consensus size: 31
15738722 AGTTTAACGA
* * *
15738732 GCACCATAAAAATTTAAGCCTAGTTTATCTA
1 GCACCATAAAAATTTAAGCCCAATTTATCTG
** ** * *
15738763 GCATTTAGTGCAAATTTAAGCCCAGTTTAGCTG
1 GCA-CCA-TAAAAATTTAAGCCCAATTTATCTG
* * * * *
15738796 ACTCCCAATAAAATTTTAAGCCCAATTTAGCTA
1 GC-ACC-ATAAAAATTTAAGCCCAATTTATCTG
* ** * * *
15738829 ACACC-T--ATTTTTAAGCCTAGTTTAGCTG
1 GCACCATAAAAATTTAAGCCCAATTTATCTG
* * *
15738857 GCTTCCAATAAAATTTTAAGCCCAGTTTATCTG
1 GC-ACC-ATAAAAATTTAAGCCCAATTTATCTG
* *
15738890 GC-CCTTAAGGAAATCTTAAGCCCAATTTAACTG
1 GCACCATAA--AAAT-TTAAGCCCAATTTATCTG
*
15738923 GCACCATAAAAATTTAAGCCTAATTTATCTG
1 GCACCATAAAAATTTAAGCCCAATTTATCTG
15738954 GCACC
1 GCACC
15738959 CAATGTAAAT
Statistics
Matches: 150, Mismatches: 33, Indels: 26
0.72 0.16 0.12
Matches are distributed among these distances:
28 19 0.13
29 2 0.01
30 4 0.03
31 27 0.18
32 10 0.07
33 82 0.55
34 6 0.04
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32
Consensus pattern (31 bp):
GCACCATAAAAATTTAAGCCCAATTTATCTG
Found at i:15738981 original size:97 final size:97
Alignment explanation
Indices: 15738724--15739024 Score: 240
Period size: 97 Copynumber: 3.1 Consensus size: 97
15738714 TTAGGCATAG
* * * * *** * *
15738724 TTTAACGAGCACCATAAAAATTTAAGCCTAGTTTATCTAGCATTTAGTGCAAATT-TAAGCCCAG
1 TTTAACTAGCACCATAAAAATTTAAGCCTAATTTAGCTGGCACCCAAT-AAAATTCTAAGCCCAG
* *
15738788 TTTAGCT-GACTCC-CAATAAAATTTTAAGCCCAA
65 TTTAGCTAG-C-CCTCAACAAAAATTTAAGCCCAA
* * ** * ** *
15738821 TTTAGCTAACACC-T--ATTTTTAAGCCTAGTTTAGCTGGCTTCCAATAAAATTTTAAGCCCAGT
1 TTTAACTAGCACCATAAAAATTTAAGCCTAATTTAGCTGGCACCCAATAAAATTCTAAGCCCAGT
* * * **
15738883 TTATCTGGCCCTTAA-GGAAATCTTAAGCCCAA
66 TTAGCTAGCCCTCAACAAAAAT-TTAAGCCCAA
* * * *
15738915 TTTAACTGGCACCATAAAAATTTAAGCCTAATTTATCTGGCACCCAATGTAAA-TCTAAGCCTAG
1 TTTAACTAGCACCATAAAAATTTAAGCCTAATTTAGCTGGCACCCAAT-AAAATTCTAAGCCCAG
15738979 TTTAGCTAGCCCTCAACAAAAATTTAAGCCCAA
65 TTTAGCTAGCCCTCAACAAAAATTTAAGCCCAA
*
15739012 TTTACCTAGCACC
1 TTTAACTAGCACC
15739025 CATTTTTTAG
Statistics
Matches: 159, Mismatches: 36, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
93 10 0.06
94 61 0.38
95 2 0.01
96 1 0.01
97 78 0.49
98 7 0.04
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (97 bp):
TTTAACTAGCACCATAAAAATTTAAGCCTAATTTAGCTGGCACCCAATAAAATTCTAAGCCCAGT
TTAGCTAGCCCTCAACAAAAATTTAAGCCCAA
Found at i:15739014 original size:66 final size:65
Alignment explanation
Indices: 15738839--15739026 Score: 177
Period size: 64 Copynumber: 2.9 Consensus size: 65
15738829 ACACCTATTT
* * * * *
15738839 TTAAGCCTAGTTTAGCTGGCTTCCAATAAAATTTTAAGCCCAGTTTATCTGGC-CCTTAAGGAAA
1 TTAAGCCTAGTTTAGCTGCCCT-CAATAAAAATTTAAGCCCAATTTATCTGGCACC-CAAGGAAA
15738903 TC
64 TC
* * * * * *
15738905 TTAAGCCCAATTTAACTGGCAC-C-ATAAAAATTTAAGCCTAATTTATCTGGCACCCAATGTAAA
1 TTAAGCCTAGTTTAGCT-GCCCTCAATAAAAATTTAAGCCCAATTTATCTGGCACCCAA-GGAAA
15738968 TC
64 TC
* * *
15738970 -TAAGCCTAGTTTAGCTAGCCCTCAACAAAAATTTAAGCCCAATTTACCTAGCACCCA
1 TTAAGCCTAGTTTAGCT-GCCCTCAATAAAAATTTAAGCCCAATTTATCTGGCACCCA
15739027 TTTTTTAGCC
Statistics
Matches: 97, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
64 43 0.44
65 10 0.10
66 43 0.44
67 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (65 bp):
TTAAGCCTAGTTTAGCTGCCCTCAATAAAAATTTAAGCCCAATTTATCTGGCACCCAAGGAAATC
Found at i:15739201 original size:33 final size:33
Alignment explanation
Indices: 15739159--15739244 Score: 95
Period size: 33 Copynumber: 2.5 Consensus size: 33
15739149 GCCTTTAATG
*
15739159 AAATTTAAGCCCAGCTTAGCTGGCTC-CTCATGA
1 AAATTTAAGCCCAGCTTAGCTGGCACAC-CATGA
* *
15739192 AAATTTAAGCCTAG-TTGATCTGGCACACCATGA
1 AAATTTAAGCCCAGCTT-AGCTGGCACACCATGA
15739225 AAACTTTTAAGCCCAGCTTA
1 AAA--TTTAAGCCCAGCTTA
15739245 TTTAGCACCT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
32 2 0.05
33 28 0.64
34 1 0.02
35 11 0.25
36 2 0.05
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (33 bp):
AAATTTAAGCCCAGCTTAGCTGGCACACCATGA
Found at i:15739278 original size:28 final size:28
Alignment explanation
Indices: 15739229--15739285 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
15739219 CCATGAAAAC
* **
15739229 TTTTAAGCCCAGCTTATTTAGCACCTAA
1 TTTTAAACCCAGCTTAGCTAGCACCTAA
* *
15739257 TTTTAAACCCAGTTTAGCTAGCTCCTAA
1 TTTTAAACCCAGCTTAGCTAGCACCTAA
15739285 T
1 T
15739286 GAAAATTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.37
Consensus pattern (28 bp):
TTTTAAACCCAGCTTAGCTAGCACCTAA
Found at i:15739445 original size:35 final size:35
Alignment explanation
Indices: 15739381--15739447 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
15739371 TTTTTTTTTT
* *
15739381 ACTTGTGGTGTCATCCCAGTCATTTTTTATTTCTA
1 ACTTATGGTGTCATCCCAGTCATTCTTTATTTCTA
* **
15739416 ACTTATGGTGTCATCCTAGTTGTTCTTTATTT
1 ACTTATGGTGTCATCCCAGTCATTCTTTATTT
15739448 TTTGACTTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.16, C:0.18, G:0.15, T:0.51
Consensus pattern (35 bp):
ACTTATGGTGTCATCCCAGTCATTCTTTATTTCTA
Found at i:15739601 original size:36 final size:36
Alignment explanation
Indices: 15739368--15739603 Score: 144
Period size: 36 Copynumber: 6.4 Consensus size: 36
15739358 CTTGGTTGTT
* *
15739368 TTCTTT-TTTTTTTACTTGTGGTG-TCATCCCAGTCA
1 TTCTTTATTTTTTGACTTGTGGTGTTC-TCTCAGTCA
* * * * **
15739403 TTTTTTA-TTTCTAACTTATGGTG-TCATC-CTAGTTG
1 TTCTTTATTTTTTGACTTGTGGTGTTC-TCTC-AGTCA
* * *
15739438 TTCTTTATTTTTTGACTTGAT-GTATTATCTTAGTCA
1 TTCTTTATTTTTTGACTTG-TGGTGTTCTCTCAGTCA
* * * *
15739474 TTTTCTTA-TTTTTGACTTGCGGTGTTGTCCCAGTCA
1 TTCT-TTATTTTTTGACTTGTGGTGTTCTCTCAGTCA
* *
15739510 TTCTTTACTTTTTGACTTGTGGTGTCTTCTTGATCCTAGTCA
1 TTCTTTATTTTTTGACTTGTGGTG--TTC-T-CT-C-AGTCA
* * *
15739552 TTCTTTATCTTTTGACTTGTGATGTTCTCTCAGTTA
1 TTCTTTATTTTTTGACTTGTGGTGTTCTCTCAGTCA
15739588 TTCTTTATTTTTTGAC
1 TTCTTTATTTTTTGAC
15739604 CTGCAATGTC
Statistics
Matches: 154, Mismatches: 32, Indels: 29
0.72 0.15 0.13
Matches are distributed among these distances:
34 1 0.01
35 35 0.23
36 77 0.50
37 6 0.04
38 3 0.02
39 2 0.01
40 3 0.02
41 1 0.01
42 26 0.17
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.55
Consensus pattern (36 bp):
TTCTTTATTTTTTGACTTGTGGTGTTCTCTCAGTCA
Found at i:15739744 original size:36 final size:36
Alignment explanation
Indices: 15739704--15739863 Score: 169
Period size: 36 Copynumber: 4.4 Consensus size: 36
15739694 TAGTAGTTCA
* *
15739704 TTATTTTTTGACTTGCAGTGTCATCCC-AGTCATTTC
1 TTATTTTTTGACTTGCAATGTCATCCCGA-TCATTTT
* * ** **
15739740 TTATTTTTTAACTTACGTTGTCATTTCGATCATTTT
1 TTATTTTTTGACTTGCAATGTCATCCCGATCATTTT
*
15739776 TTATTTTTTGACTTGTAATGTCATCCCGATCATTTT
1 TTATTTTTTGACTTGCAATGTCATCCCGATCATTTT
* * ** *
15739812 TTATTTTTTGACTTGCAATGTCGTCCTGATTGTTCT
1 TTATTTTTTGACTTGCAATGTCATCCCGATCATTTT
*
15739848 TTATTTTTTCACTTGC
1 TTATTTTTTGACTTGC
15739864 GATATTGTCT
Statistics
Matches: 102, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
36 101 0.99
37 1 0.01
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.54
Consensus pattern (36 bp):
TTATTTTTTGACTTGCAATGTCATCCCGATCATTTT
Found at i:15739881 original size:36 final size:36
Alignment explanation
Indices: 15739775--15739882 Score: 90
Period size: 36 Copynumber: 3.0 Consensus size: 36
15739765 TCGATCATTT
* * * * * ** *
15739775 TTTATTTTTTGACTTGTAATGTCATCCCGATCATTT
1 TTTATTTTTTCACTTGCAATATCGTCCTGATTGTTC
* *
15739811 TTTATTTTTTGACTTGCAATGTCGTCCTGATTGTTC
1 TTTATTTTTTCACTTGCAATATCGTCCTGATTGTTC
* * * *
15739847 TTTATTTTTTCACTTGCGATATTGTCTTGGTTGTTC
1 TTTATTTTTTCACTTGCAATATCGTCCTGATTGTTC
15739883 ATTGTTTTGA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.15, C:0.16, G:0.15, T:0.55
Consensus pattern (36 bp):
TTTATTTTTTCACTTGCAATATCGTCCTGATTGTTC
Found at i:15739999 original size:36 final size:37
Alignment explanation
Indices: 15739905--15740095 Score: 145
Period size: 37 Copynumber: 5.2 Consensus size: 37
15739895 TGTGATGTTG
* * *
15739905 TCCCAATCATTTTCTTATTTTTTAACTTGCGGTGTCT
1 TCCCAATCATTTTCTTATTTTTTGACTTACGGTGTCA
** * * *
15739942 TCTTAGTCA--ATCATTATTTTTTTACTTACGGTGTCA
1 TCCCAATCATTTTC-TTATTTTTTGACTTACGGTGTCA
*
15739978 TCCCAATCATTTTCTTATTTTTTGACTTACGGTATCA
1 TCCCAATCATTTTCTTATTTTTTGACTTACGGTGTCA
* * ** * ***
15740015 TCCCGATCGTGCT-TTATTTTTCGACTTATTATGTCA
1 TCCCAATCATTTTCTTATTTTTTGACTTACGGTGTCA
* ** * **
15740051 TCCCAGTTGTTTTCTTATTTTTTGACTTACGATGTTG
1 TCCCAATCATTTTCTTATTTTTTGACTTACGGTGTCA
15740088 TCCCAATC
1 TCCCAATC
15740096 TCAATCGTTC
Statistics
Matches: 116, Mismatches: 34, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
35 2 0.02
36 52 0.45
37 60 0.52
38 2 0.02
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.49
Consensus pattern (37 bp):
TCCCAATCATTTTCTTATTTTTTGACTTACGGTGTCA
Found at i:15740167 original size:3 final size:3
Alignment explanation
Indices: 15740148--15740206 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
15740138 AAAAACAAAA
* * * *
15740148 AAC AAC AA- AAC AA- AAC AAC ATAGA AAC AAA AAC AAA AAC AAA AAC
1 AAC AAC AAC AAC AAC AAC AAC A-A-C AAC AAC AAC AAC AAC AAC AAC
15740193 AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AA
15740207 AATTAAGAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
2 4 0.09
3 37 0.84
4 2 0.05
5 1 0.02
ACGTcount: A:0.75, C:0.22, G:0.02, T:0.02
Consensus pattern (3 bp):
AAC
Found at i:15740182 original size:6 final size:6
Alignment explanation
Indices: 15740138--15740208 Score: 61
Period size: 6 Copynumber: 10.7 Consensus size: 6
15740128 TGTCCCCTAT
15740138 AAAAAC AAAAAAC AACAAAAC AAAACAAC ATAGAAAC AAAAAC AAAAAC
1 AAAAAC -AAAAAC -A-AAAAC -AAA-AAC A-A-AAAC AAAAAC AAAAAC
* *
15740187 AAAAAC AACAAC AACAAC AAAA
1 AAAAAC AAAAAC AAAAAC AAAA
15740209 TTAAGAACAA
Statistics
Matches: 58, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
6 30 0.52
7 12 0.21
8 15 0.26
9 1 0.02
ACGTcount: A:0.77, C:0.20, G:0.01, T:0.01
Consensus pattern (6 bp):
AAAAAC
Found at i:15740941 original size:145 final size:145
Alignment explanation
Indices: 15740747--15741083 Score: 395
Period size: 145 Copynumber: 2.3 Consensus size: 145
15740737 TGAATTTTTG
* * * ** * *
15740747 TGAAACTTTTCAGATTTTAATTTCATAATATTTCATGATTTTTAATGCATTTGAAATCGCAGCAG
1 TGAAACTTTTCAAATCTCAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATCACAGCAC
* * * * **
15740812 TGCCTCAAAAAGTATGAAATTACCAAAATACCCTTATAAGGGTATTTTTGTAATTTGGCCTTCCC
66 TACCCCAAAAAGTATAAAATTACCAAAATACCCATATAAGGGTATTTTCATAATTTGGCCTTCCC
15740877 AAGCTCAGATTTTCA
131 AAGCTCAGATTTTCA
* * * * *
15740892 TGAAACTTTTCATATCTCAATTTCACAATATTTCATGACTTTTGGTGCATTTGAAATCATAGTAC
1 TGAAACTTTTCAAATCTCAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATCACAGCAC
* * * * * *
15740957 TACCCCAAGAAGTGTAAAATTACTAAAATACCCATATATGGGTATTTTCATAATTTGGCTTTCTC
66 TACCCCAAAAAGTATAAAATTACCAAAATACCCATATAAGGGTATTTTCATAATTTGGCCTTCCC
* **
15741022 GAGCTTGGATTTTCA
131 AAGCTCAGATTTTCA
** * *
15741037 CAAAATTTTTCAAATCTCAATTTCATAATATTTCATTATTTTTGGTG
1 TGAAACTTTTCAAATCTCAATTTCATAATATTTCATGATTTTTGGTG
15741084 TTTTAAAATT
Statistics
Matches: 159, Mismatches: 33, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
145 159 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (145 bp):
TGAAACTTTTCAAATCTCAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATCACAGCAC
TACCCCAAAAAGTATAAAATTACCAAAATACCCATATAAGGGTATTTTCATAATTTGGCCTTCCC
AAGCTCAGATTTTCA
Found at i:15744921 original size:20 final size:21
Alignment explanation
Indices: 15744884--15744924 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
15744874 CGATTCTTTC
15744884 TACTGCAAACTTCAATTTCCT
1 TACTGCAAACTTCAATTTCCT
**
15744905 TACTG-AAACTTTGATTTCCT
1 TACTGCAAACTTCAATTTCCT
15744925 CTGCTTGTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.41
Consensus pattern (21 bp):
TACTGCAAACTTCAATTTCCT
Found at i:15753575 original size:14 final size:15
Alignment explanation
Indices: 15753550--15753578 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
15753540 TTAATGTTAT
15753550 TTATATTTTAAATAA
1 TTATATTTTAAATAA
15753565 TTATA-TTTAAATAA
1 TTATATTTTAAATAA
15753579 AAATAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTATATTTTAAATAA
Found at i:15754043 original size:4 final size:4
Alignment explanation
Indices: 15754029--15754068 Score: 71
Period size: 4 Copynumber: 10.0 Consensus size: 4
15754019 TTCATTAAAG
*
15754029 GTAT ATAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
15754069 TATTATTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:15754074 original size:3 final size:3
Alignment explanation
Indices: 15754066--15754111 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
15754056 TGTATGTATG
15754066 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
15754112 TTGCATAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:15758083 original size:17 final size:16
Alignment explanation
Indices: 15758061--15758102 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
15758051 ATTTCCTTTG
15758061 TATTTTTTTAC-TTCCTT
1 TATTTTTTTACATT--TT
15758078 TATTTTATTTACATTTT
1 TATTTT-TTTACATTTT
15758095 TATTTTTT
1 TATTTTTT
15758103 ATTAAAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.09
17 14 0.61
18 5 0.22
19 2 0.09
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TATTTTTTTACATTTT
Found at i:15764115 original size:2 final size:2
Alignment explanation
Indices: 15764069--15764101 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
15764059 AACTCGAATA
*
15764069 AT AT AT AT AT AT AT AT AT AT AT AT -T CT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15764102 GTGAATTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:15764563 original size:301 final size:305
Alignment explanation
Indices: 15764012--15764623 Score: 1072
Period size: 301 Copynumber: 2.0 Consensus size: 305
15764002 TTAAATTATG
*
15764012 AGCCAAGCCTTAGACAAAAAATTAAAAACCCAAGAATGACCCTACTCAACTCGAATAATATATAT
1 AGCCAAGCCTTAGACAAAAAATTAAAAACCCAAAAATGACCCTACTCAACTCG----A-ATATAT
15764077 ATATATATATATATATTCTATATATGTGAATTATATATAAATTAATTCACATATATAAATATTAC
61 ATATATATATATATATTCTATATATGTGAATTATATATAAATTAATTCACATATATAAATATTAC
*
15764142 AAATAAAATTATATATATTTTATTAAACTTAATTTTTATTTCTAGATAATTTTTATTTTTACTAT
126 AAATAAAATTATATATATTTTATTAAACTTAATTTTTATTTCTAGATAATTTTTATTTTTAATAT
**
15764207 TTATATATATGTGAATTAAATAAAATCCCATTAAACTTAATTTTAATCACACTTTTTAAAATTTT
191 TTATATATATGTGAATTAAATAAAATCCCATTAAACTTAATTTTAATCACACTTTTTAAAAAATT
*
15764272 TTTATTATATAAACTAAGTTAAATTGGTAGGTTTAAGATTTATTTTTTTA
256 TTTATTATAAAAACTAAGTTAAATTGGTAGGTTTAAGATTTATTTTTTTA
15764322 AGCCAAGCCTTAGACAAAAAATTAAAAACCCAAAAATGACCCCTACTCAACTCG-A-ATA-ATAT
1 AGCCAAGCCTTAGACAAAAAATTAAAAACCCAAAAATGA-CCCTACTCAACTCGAATATATATAT
15764384 ATATATATATA-T-TATATATGTGAATTATATATAAATTAATTCACATATATAAATATTACAAAT
65 ATATATATATATTCTATATATGTGAATTATATATAAATTAATTCACATATATAAATATTACAAAT
15764447 AAAATTATATATATTTTATTAAACTTAATTTTTATTTCTAGATAATTTTTATTTTTAATATTTAT
130 AAAATTATATATATTTTATTAAACTTAATTTTTATTTCTAGATAATTTTTATTTTTAATATTTAT
15764512 ATATATGTGAATTAAATAAAATCCCATTAAACTTAATTTTAATCACACTTTTTAAAAAATTTTTA
195 ATATATGTGAATTAAATAAAATCCCATTAAACTTAATTTTAATCACACTTTTTAAAAAATTTTTA
* *
15764577 TTATAAAAAGTAAGTTAAATTGGTGGGTTTAAGATTTATTTTTTTA
260 TTATAAAAACTAAGTTAAATTGGTAGGTTTAAGATTTATTTTTTTA
15764623 A
1 A
15764624 TTTAAGCCGC
Statistics
Matches: 294, Mismatches: 7, Indels: 11
0.94 0.02 0.04
Matches are distributed among these distances:
301 222 0.76
302 1 0.00
303 15 0.05
304 3 0.01
305 1 0.00
310 38 0.13
311 14 0.05
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (305 bp):
AGCCAAGCCTTAGACAAAAAATTAAAAACCCAAAAATGACCCTACTCAACTCGAATATATATATA
TATATATATATTCTATATATGTGAATTATATATAAATTAATTCACATATATAAATATTACAAATA
AAATTATATATATTTTATTAAACTTAATTTTTATTTCTAGATAATTTTTATTTTTAATATTTATA
TATATGTGAATTAAATAAAATCCCATTAAACTTAATTTTAATCACACTTTTTAAAAAATTTTTAT
TATAAAAACTAAGTTAAATTGGTAGGTTTAAGATTTATTTTTTTA
Found at i:15767614 original size:2 final size:2
Alignment explanation
Indices: 15767607--15767632 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15767597 CGGATATTAA
15767607 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
15767633 TAAGTTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15767717 original size:18 final size:19
Alignment explanation
Indices: 15767691--15767734 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
15767681 CCAAACCAAA
* *
15767691 TTATATATATTTTTTAGTTT
1 TTATATATA-TTTTAAATTT
15767711 TTATATATATTTTAAATTT
1 TTATATATATTTTAAATTT
15767730 TTATA
1 TTATA
15767735 AAATAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTATATATATTTTAAATTT
Found at i:15767731 original size:20 final size:20
Alignment explanation
Indices: 15767691--15767734 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
15767681 CCAAACCAAA
**
15767691 TTATATATATTTTTTAGTTT
1 TTATATATATTTTAAAGTTT
15767711 TTATATATATTTTAAA-TTT
1 TTATATATATTTTAAAGTTT
15767730 TTATA
1 TTATA
15767735 AAATAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TTATATATATTTTAAAGTTT
Found at i:15767791 original size:13 final size:13
Alignment explanation
Indices: 15767773--15767813 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
15767763 TCTACTTAAA
15767773 TATATTAAAATTT
1 TATATTAAAATTT
**
15767786 TATATTAAAATAA
1 TATATTAAAATTT
*
15767799 TATATAAAAATTT
1 TATATTAAAATTT
15767812 TA
1 TA
15767814 AAAATTAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TATATTAAAATTT
Found at i:15768138 original size:29 final size:30
Alignment explanation
Indices: 15768106--15768164 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
15768096 TCATTTTTTT
* *
15768106 AAAAT-AATTTTTGATCCTTTTA-TTGTATC
1 AAAATAAATCTTT-ATCCTTTCATTTGTATC
15768135 AAAATAAATCTTTATCCTTTCATTTGTATC
1 AAAATAAATCTTTATCCTTTCATTTGTATC
15768165 CATTTAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.32, C:0.14, G:0.05, T:0.49
Consensus pattern (30 bp):
AAAATAAATCTTTATCCTTTCATTTGTATC
Found at i:15768277 original size:30 final size:29
Alignment explanation
Indices: 15768243--15768307 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
15768233 TGTTAAAGGC
* *
15768243 TTATTTAGATATTAATTAAAGGTTAAAATT
1 TTATTTAGATATAAATTAAAGATTAAAA-T
* * *
15768273 TTATTTTGGTATAAATTAAAGATTAAGAT
1 TTATTTAGATATAAATTAAAGATTAAAAT
15768302 TTATTT
1 TTATTT
15768308 GGATGCAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (29 bp):
TTATTTAGATATAAATTAAAGATTAAAAT
Found at i:15776145 original size:27 final size:27
Alignment explanation
Indices: 15776102--15776160 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
15776092 TATTTAAAAC
*
15776102 AATATCTAAATTTTAAAATTTTTAATT
1 AATATCTAAATTATAAAATTTTTAATT
* *
15776129 GATATTTAAATTATAAAATTTTTAATT
1 AATATCTAAATTATAAAATTTTTAATT
15776156 AATAT
1 AATAT
15776161 AGTACTTACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
AATATCTAAATTATAAAATTTTTAATT
Found at i:15777605 original size:2 final size:2
Alignment explanation
Indices: 15777600--15777628 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15777590 TGTGTGTGTC
15777600 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15777629 TGGGAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15784851 original size:2 final size:2
Alignment explanation
Indices: 15784844--15784873 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15784834 AGTACGATGA
15784844 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15784874 TGTACACTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15786249 original size:2 final size:2
Alignment explanation
Indices: 15786238--15786266 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
15786228 AACGTCTACT
15786238 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15786267 ATTTCATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:15786535 original size:2 final size:2
Alignment explanation
Indices: 15786530--15786576 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
15786520 GTATAGTGTG
15786530 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15786572 TA TA T
1 TA TA T
15786577 CAGCTAAGCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15787317 original size:17 final size:18
Alignment explanation
Indices: 15787282--15787324 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
15787272 GCATTTTTTA
15787282 ATTAAATTTATTTACTAAT
1 ATTAAATTTATTTA-TAAT
*
15787301 ATTATATTTATTT-TAAT
1 ATTAAATTTATTTATAAT
*
15787318 ATAAAAT
1 ATTAAAT
15787325 CAAAATATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 9 0.43
19 12 0.57
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTAAATTTATTTATAAT
Found at i:15787892 original size:23 final size:23
Alignment explanation
Indices: 15787846--15787892 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
15787836 AAATTTTATG
*
15787846 TTCTCTCTCTAAAACTAAATTAA
1 TTCTCTCTCTAAAACTAAACTAA
* *
15787869 TTCTCTCTCTAAACCTAGACTAA
1 TTCTCTCTCTAAAACTAAACTAA
15787892 T
1 T
15787893 CCATAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.34, C:0.26, G:0.02, T:0.38
Consensus pattern (23 bp):
TTCTCTCTCTAAAACTAAACTAA
Found at i:15788682 original size:21 final size:23
Alignment explanation
Indices: 15788656--15788705 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
15788646 GCAAACATAG
15788656 AATTTTTAGG-ATTTT-TCTT-GA
1 AATTTTT-GGCATTTTCTCTTGGA
*
15788677 AATTTTTGGCATTTTCTTTTGGA
1 AATTTTTGGCATTTTCTCTTGGA
15788700 AATTTT
1 AATTTT
15788706 CTGAGAATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 12 0.48
22 3 0.12
23 8 0.32
ACGTcount: A:0.22, C:0.06, G:0.14, T:0.58
Consensus pattern (23 bp):
AATTTTTGGCATTTTCTCTTGGA
Found at i:15789420 original size:25 final size:24
Alignment explanation
Indices: 15789382--15789429 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
15789372 AATATTTATT
*
15789382 TAAAAAAAAGTAAAATAAAAAATA
1 TAAAAAAAAATAAAATAAAAAATA
*
15789406 TAAAAAAAACATAAAATATAAAAT
1 TAAAAAAAA-ATAAAATAAAAAAT
15789430 TTTGGAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (24 bp):
TAAAAAAAAATAAAATAAAAAATA
Found at i:15790938 original size:15 final size:16
Alignment explanation
Indices: 15790918--15790947 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15790908 ACATTCCATT
15790918 CATGCATAAA-CATAC
1 CATGCATAAAGCATAC
15790933 CATGCATAAAGCATA
1 CATGCATAAAGCATA
15790948 TAATTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.23, G:0.10, T:0.20
Consensus pattern (16 bp):
CATGCATAAAGCATAC
Found at i:15793980 original size:41 final size:41
Alignment explanation
Indices: 15793914--15793991 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
15793904 GTAAAAAACA
* *
15793914 CCTTCAATAAATGTCCTATCGAAATTTAAGGATCATAAATG
1 CCTTCAATAAATATCCTATCAAAATTTAAGGATCATAAATG
*
15793955 CCTTTAATAAATATCCTATCAAAATTTAAGGATCATA
1 CCTTCAATAAATATCCTATCAAAATTTAAGGATCATA
15793992 CGATTATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (41 bp):
CCTTCAATAAATATCCTATCAAAATTTAAGGATCATAAATG
Found at i:15794329 original size:64 final size:64
Alignment explanation
Indices: 15794196--15794344 Score: 162
Period size: 64 Copynumber: 2.3 Consensus size: 64
15794186 ATATGGAATG
* * *
15794196 GATTCTTGAAGGTGTTTTGGGCCGAAAGTGCATTCAATAATCCAATCAATAAATTTTCATAAGGA
1 GATTATTGAAGGTGTTTTGGGCCCAAAATGCATTCAATAATCCAATCAATAAATTTT-ATAAGGA
* * *
15794261 -ATTATTGAAGGTAGTTTT-GGCCCAAAATGCCTTTAATAATCCACA-CAATAAATTTT-TAGGT
1 GATTATTGAAGGT-GTTTTGGGCCCAAAATGCATTCAATAATCCA-ATCAATAAATTTTATAAG-
15794322 GA
63 GA
*
15794324 GATTATTGAAGGCGATTTTGG
1 GATTATTGAAGGTG-TTTTGG
15794345 TCAAAAACGC
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
62 3 0.04
63 3 0.04
64 58 0.82
65 7 0.10
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (64 bp):
GATTATTGAAGGTGTTTTGGGCCCAAAATGCATTCAATAATCCAATCAATAAATTTTATAAGGA
Found at i:15794357 original size:64 final size:63
Alignment explanation
Indices: 15794231--15794363 Score: 146
Period size: 64 Copynumber: 2.1 Consensus size: 63
15794221 AAGTGCATTC
* * * *
15794231 AATAATCCAATCAATAAATTTTCATAAGGAATTATTGAAGGTAGTTTTGGCCCAAAATGCCTTT
1 AATAATCCAATCAATAAATTTT-ATAAGGAATTATTGAAGGGAGTTTTGGCCAAAAACGCCTTA
* *
15794295 AATAATCCACA-CAATAAATTTT-TAGGTGAGATTATTGAAGGCGA-TTTTGGTCAAAAACGCCT
1 AATAATCCA-ATCAATAAATTTTATAAG-GA-ATTATTGAAGG-GAGTTTTGGCCAAAAACGCCT
15794357 TA
62 TA
15794359 AATAA
1 AATAA
15794364 CATTTTGTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
62 3 0.05
63 2 0.03
64 52 0.88
65 2 0.03
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (63 bp):
AATAATCCAATCAATAAATTTTATAAGGAATTATTGAAGGGAGTTTTGGCCAAAAACGCCTTA
Found at i:15794500 original size:35 final size:35
Alignment explanation
Indices: 15794451--15794523 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
15794441 ATTATATATG
* *
15794451 TGAAATTAGTTATAGGTTTATGCCCATAAAACATT
1 TGAAATTAGTTATAGGTTTATGCCAAAAAAACATT
* *
15794486 TGAAGTTAGTTATAGGTTTATGCTAAAAAAACATT
1 TGAAATTAGTTATAGGTTTATGCCAAAAAAACATT
15794521 TGA
1 TGA
15794524 TTTATATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.37
Consensus pattern (35 bp):
TGAAATTAGTTATAGGTTTATGCCAAAAAAACATT
Found at i:15797747 original size:23 final size:25
Alignment explanation
Indices: 15797697--15797754 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 25
15797687 CAGCAATGTG
15797697 TTCAGAAACACCATTCAGCAAGCCA
1 TTCAGAAACACCATTCAGCAAGCCA
*
15797722 TTCA-AAACACCATTTAGC-AGCCA
1 TTCAGAAACACCATTCAGCAAGCCA
15797745 TTCAGCAAAC
1 TTCAG-AAAC
15797755 TAATATCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 9 0.30
24 13 0.43
25 8 0.27
ACGTcount: A:0.40, C:0.31, G:0.10, T:0.19
Consensus pattern (25 bp):
TTCAGAAACACCATTCAGCAAGCCA
Found at i:15797774 original size:28 final size:27
Alignment explanation
Indices: 15797742--15797806 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 27
15797732 CATTTAGCAG
15797742 CCATTCAGCAAACTAATATCATACAATA
1 CCATTCAGCAAAC-AATATCATACAATA
*
15797770 CCATTCAGTAAAACAATATCATACAATA
1 CCATTCAG-CAAACAATATCATACAATA
15797798 CCATTCAGC
1 CCATTCAGC
15797807 TAACCATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 30 0.88
29 4 0.12
ACGTcount: A:0.45, C:0.26, G:0.05, T:0.25
Consensus pattern (27 bp):
CCATTCAGCAAACAATATCATACAATA
Found at i:15799857 original size:21 final size:22
Alignment explanation
Indices: 15799818--15799860 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
15799808 AATTTAAAAT
15799818 TAAAAACTTTAAAATACTTAAA
1 TAAAAACTTTAAAATACTTAAA
*
15799840 TAAAAACTTTAAGA-ACTTAAA
1 TAAAAACTTTAAAATACTTAAA
15799861 CTTAAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (22 bp):
TAAAAACTTTAAAATACTTAAA
Found at i:15799874 original size:21 final size:21
Alignment explanation
Indices: 15799850--15799909 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
15799840 TAAAAACTTT
** *
15799850 AAGAACTTAAACTTAAATTTA
1 AAGAACTTAAAAGTAAATTGA
* * *
15799871 AAGAGCCTAAAAGTAAATTGC
1 AAGAACTTAAAAGTAAATTGA
15799892 AAGAACTTAAAAG-AAATT
1 AAGAACTTAAAAGTAAATT
15799910 TGAATTGTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 5 0.16
21 26 0.84
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (21 bp):
AAGAACTTAAAAGTAAATTGA
Found at i:15808669 original size:2 final size:2
Alignment explanation
Indices: 15808662--15808692 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
15808652 TATTATGCTA
*
15808662 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15808693 ATACTAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:15808676 original size:10 final size:10
Alignment explanation
Indices: 15808661--15808695 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
15808651 ATATTATGCT
15808661 AATATATATA
1 AATATATATA
15808671 AATATATATA
1 AATATATATA
*
15808681 TATATATATA
1 AATATATATA
15808691 TAATA
1 -AATA
15808696 CTAAATAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 19 0.86
11 3 0.14
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
AATATATATA
Found at i:15817740 original size:2 final size:2
Alignment explanation
Indices: 15817729--15817761 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
15817719 TTGATTGACT
15817729 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15817762 GAGAGAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:15823168 original size:16 final size:16
Alignment explanation
Indices: 15823147--15823177 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15823137 TGATATAAAC
*
15823147 AAAAAGGGAAAATGAT
1 AAAAAGGAAAAATGAT
15823163 AAAAAGGAAAAATGA
1 AAAAAGGAAAAATGA
15823178 CTCTTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.23, T:0.10
Consensus pattern (16 bp):
AAAAAGGAAAAATGAT
Found at i:15831420 original size:20 final size:19
Alignment explanation
Indices: 15831381--15831558 Score: 112
Period size: 20 Copynumber: 8.9 Consensus size: 19
15831371 TAAAATTTGA
*
15831381 AACCCTAAATTCCCAAACCCT
1 AACCCTAAA--CCTAAACCCT
15831402 AACCTCTAAACCTAAACCCT
1 AACC-CTAAACCTAAACCCT
*
15831422 AACCCTAAACTCTAATA-CCA
1 AACCCTAAAC-CTAA-ACCCT
*
15831442 AACCCTAAACCCTAAACCTT
1 AACCCTAAA-CCTAAACCCT
* *
15831462 AATCCTAAACCCT-AACCCAA
1 AACCCTAAA-CCTAAACCC-T
* * *
15831482 AACCCTAAATC-ATACTCTT
1 AACCCTAAACCTAAAC-CCT
15831501 AAACCCTAAACCCTAAACCCT
1 -AACCCTAAA-CCTAAACCCT
* * *
15831522 GACCCTATATCATAAACCCT
1 AACCCTA-AACCTAAACCCT
15831542 AA-CCTAAAACCTAAACC
1 AACCCT-AAACCTAAACC
15831559 ATAAAACTTA
Statistics
Matches: 123, Mismatches: 21, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
19 25 0.20
20 80 0.65
21 10 0.08
22 8 0.07
ACGTcount: A:0.42, C:0.38, G:0.01, T:0.20
Consensus pattern (19 bp):
AACCCTAAACCTAAACCCT
Found at i:15831422 original size:7 final size:7
Alignment explanation
Indices: 15831380--15831597 Score: 144
Period size: 7 Copynumber: 32.7 Consensus size: 7
15831370 CTAAAATTTG
15831380 AAACCCT
1 AAACCCT
15831387 AAATTCCC-
1 AAA--CCCT
15831395 AAACCCT
1 AAACCCT
15831402 -AACCTCT
1 AAACC-CT
15831409 AAA-CCT
1 AAACCCT
15831415 AAACCCT
1 AAACCCT
15831422 -AACCCT
1 AAACCCT
*
15831428 AAACTCT
1 AAACCCT
15831435 AATA-CC-
1 AA-ACCCT
15831441 AAACCCT
1 AAACCCT
15831448 AAACCCT
1 AAACCCT
15831455 AAA-CCT
1 AAACCCT
* *
15831461 TAATCCT
1 AAACCCT
15831468 AAACCCT
1 AAACCCT
*
15831475 -AACCCA
1 AAACCCT
15831481 AAACCCT
1 AAACCCT
*
15831488 AAA-TC-
1 AAACCCT
* *
15831493 ATACTCTT
1 AAAC-CCT
15831501 AAACCCT
1 AAACCCT
15831508 AAACCCT
1 AAACCCT
15831515 AAACCCT
1 AAACCCT
*
15831522 -GACCCT
1 AAACCCT
* * *
15831528 ATATCAT
1 AAACCCT
15831535 AAACCCT
1 AAACCCT
15831542 -AA-CCT
1 AAACCCT
*
15831547 AAAACCT
1 AAACCCT
*
15831554 AAACCAT
1 AAACCCT
* *
15831561 AAAACTT
1 AAACCCT
15831568 AAACCCT
1 AAACCCT
15831575 AAA--CT
1 AAACCCT
15831580 AAACCC-
1 AAACCCT
15831586 AAACCCT
1 AAACCCT
15831593 AAACC
1 AAACC
15831598 AAACCATAAA
Statistics
Matches: 164, Mismatches: 26, Indels: 42
0.71 0.11 0.18
Matches are distributed among these distances:
5 11 0.07
6 48 0.29
7 93 0.57
8 9 0.05
9 3 0.02
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:15831423 original size:13 final size:13
Alignment explanation
Indices: 15831402--15831619 Score: 132
Period size: 13 Copynumber: 16.8 Consensus size: 13
15831392 CCCAAACCCT
15831402 AACCTCTAAACCTA
1 AACC-CTAAACCTA
*
15831416 AACCCTAACCCTA
1 AACCCTAAACCTA
*
15831429 AACTCTAATACC-A
1 AACCCTAA-ACCTA
15831442 AACCCTAAACCCTA
1 AACCCTAAA-CCTA
* *
15831456 AACCTTAATCCTA
1 AACCCTAAACCTA
* *
15831469 AACCCTAACCCAA
1 AACCCTAAACCTA
*
15831482 AACCCTAAATC-A
1 AACCCTAAACCTA
* *
15831494 TACTCTTAAACCCTA
1 AAC-CCTAAA-CCTA
15831509 AACCCTAAACCCT-
1 AACCCTAAA-CCTA
* * *
15831522 GACCCTATATCATA
1 AACCCTA-AACCTA
15831536 AACCCT-AACCTA
1 AACCCTAAACCTA
*
15831548 AAACCTAAACCATA
1 AACCCTAAACC-TA
* *
15831562 AAACTTAAACCCTA
1 AACCCTAAA-CCTA
*
15831576 AA--CTAAACCCA
1 AACCCTAAACCTA
15831587 AACCCTAAACC-A
1 AACCCTAAACCTA
*
15831599 AACCATAAA-CT-
1 AACCCTAAACCTA
15831610 AACCC-AAACC
1 AACCCTAAACC
15831620 CCCAAACCAA
Statistics
Matches: 161, Mismatches: 28, Indels: 33
0.73 0.13 0.15
Matches are distributed among these distances:
10 3 0.02
11 11 0.07
12 26 0.16
13 72 0.45
14 44 0.27
15 5 0.03
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (13 bp):
AACCCTAAACCTA
Found at i:15831479 original size:33 final size:33
Alignment explanation
Indices: 15831402--15831597 Score: 103
Period size: 33 Copynumber: 5.9 Consensus size: 33
15831392 CCCAAACCCT
* *
15831402 AACCTCTAAACCTAAACCCTAACCCTAAACTCTA
1 AACC-CTAATCCTAAACCCTAACCCTAAACCCTA
* * * * *
15831436 ATA-CCAAACCCTAAACCCTAAACCTTAATCCTA
1 A-ACCCTAATCCTAAACCCTAACCCTAAACCCTA
* * ** * *
15831469 AACCCTAACCCAAAACCCTAAATC-ATACTCTTA
1 AACCCTAATCCTAAACCCTAACCCTAAAC-CCTA
* * * * *
15831502 AACCCTAAACCCTAAACCCTGACCCTATATCATA
1 AACCCT-AATCCTAAACCCTAACCCTAAACCCTA
* * * *
15831536 AACCCTAA-CCTAAAACCTAAACCATAAAACTTA
1 AACCCTAATCCTAAACCCT-AACCCTAAACCCTA
* *
15831569 AACCCTAA-ACTAAACCCAAACCCTAAACC
1 AACCCTAATCCTAAACCCTAACCCTAAACC
15831598 AAACCATAAA
Statistics
Matches: 126, Mismatches: 30, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
32 20 0.16
33 77 0.61
34 25 0.20
35 4 0.03
ACGTcount: A:0.44, C:0.37, G:0.01, T:0.19
Consensus pattern (33 bp):
AACCCTAATCCTAAACCCTAACCCTAAACCCTA
Found at i:15831589 original size:18 final size:18
Alignment explanation
Indices: 15831568--15831602 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
15831558 CATAAAACTT
*
15831568 AAACCCTAAACTAAACCC
1 AAACCCTAAACCAAACCC
15831586 AAACCCTAAACCAAACC
1 AAACCCTAAACCAAACC
15831603 ATAAACTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.40, G:0.00, T:0.09
Consensus pattern (18 bp):
AAACCCTAAACCAAACCC
Found at i:15831608 original size:30 final size:30
Alignment explanation
Indices: 15831568--15831629 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
15831558 CATAAAACTT
* *
15831568 AAACCCTAAACTAAACCCAAA-CCCTAAACC
1 AAACCATAAACT-AACCCAAACCCCCAAACC
15831598 AAACCATAAACTAACCCAAACCCCCAAACC
1 AAACCATAAACTAACCCAAACCCCCAAACC
15831628 AA
1 AA
15831630 CCTTCAAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (30 bp):
AAACCATAAACTAACCCAAACCCCCAAACC
Found at i:15834451 original size:258 final size:255
Alignment explanation
Indices: 15833994--15834852 Score: 896
Period size: 258 Copynumber: 3.3 Consensus size: 255
15833984 AACCAGTTTC
* * * * * * * **
15833994 TATGGTACGAGGGCATAATAATTCCTTTGGCTATATGTCAATTTCTTATTATATAATGGGAAA-G
1 TATGGTATGAGGGCATAATAGTTCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
** * ** * *
15834058 ACATTTTGGTAATTTTTTAGAA-GATTATTTAGTAAATAATTATAAGAGAAGAGGTATTTTTGTA
66 GTATTTTAGTAATTTAATA-AAGGATTATTTAGTAAATAATTATAA-AAAAAAGGTATTTTTGTA
* * * * *
15834122 ATTATGATATGAAGGCATAATAGTCCATTTGGCTGCATGCCAATTTATTATCATATAATGGAAAG
129 ATTATGGTATGAAGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAAT-GAAAA
*
15834187 GGCATTTTCATAATTTCATAAATTATTTAGTAAAAAATTATTAA-AGAAAGGGTATTTTCATAAT
193 GGCATTTTC-TAATTTCATAAATTATTTAGTAAATAATTA-TAAGAGAAAGGGTATTTTCATAAT
* *
15834251 TATGGTATGTGAGCATAATAGTTCATTTGGCCACATGAT-AATTTCTAATCATATAATGAAAAAG
1 TATGGTATGAGGGCATAATAGTTCATTTGGCCACATG-TCAATTTCTAATCATATAATGAAAAAG
* * *
15834315 GGTATTTTTGTAATTTCATAAAGGATTATTTAGTAAATAATTATTAAAAAAAAGGTATTTTAGTA
65 GGTATTTTAGTAATTTAATAAAGGATTATTTAGTAAATAATTA-TAAAAAAAAGGTATTTTTGTA
* * *
15834380 ACTATGGTATGACA-GCATAATAGTCCATTTAGCTACATGTCAATTTCTTATCATATAACGAAAA
129 ATTATGGTATGA-AGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATG-AAA
* * *
15834444 AGGCATTTTGGTAATTTCATAAAGGGTTATTTAGTAAATAATTATAAGAGAATGAGTATTTTCAT
192 AGGCATTTT-CTAATTTCATAAA---TTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCAT
15834509 AAT
253 AAT
* * * * *
15834512 TATGCTATGAGGGCATAATCGTTCATTTGGACACATGTCAACTTCTTATCATATAATGAAAAA-G
1 TATGGTATGAGGGCATAATAGTTCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
* * * * * *
15834576 ATAATTTAGTAATTTAATGAGGGATTATTTAGT-AATAATTAT-AAAAGATGGAATATTTTTGTA
66 GTATTTTAGTAATTTAATAAAGGATTATTTAGTAAATAATTATAAAAAAAAGG--TATTTTTGTA
* * * * * * *
15834639 ATTATGGTATAAAGGAATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATTTATTGGAAAG
129 ATTATGGTATGAAGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATGAAAAG
* * * * **
15834704 G-GTTATTGCTAATTTCATAGGTGATTATCTAGTAAATAATTATAAGAGAAGGGGTATTTTCGCA
194 GCATT-TT-CTAATTTCATA---AATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATA
15834768 AT
254 AT
* * *
15834770 AATGGTATGAGGGCATAATATTTCATTTGGCCACATGTCAATTTCTAAT-ATATAATG-GAAAGG
1 TATGGTATGAGGGCATAATAGTTCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
15834833 GTATTTTCA-TAATTATAATA
66 GTATTTT-AGTAATT-TAATA
15834853 TGAGGGCATA
Statistics
Matches: 504, Mismatches: 76, Indels: 43
0.81 0.12 0.07
Matches are distributed among these distances:
256 3 0.01
257 81 0.16
258 228 0.45
259 70 0.14
260 32 0.06
261 90 0.18
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (255 bp):
TATGGTATGAGGGCATAATAGTTCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
GTATTTTAGTAATTTAATAAAGGATTATTTAGTAAATAATTATAAAAAAAAGGTATTTTTGTAAT
TATGGTATGAAGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATGAAAAGGC
ATTTTCTAATTTCATAAATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAAT
Found at i:15834692 original size:129 final size:129
Alignment explanation
Indices: 15833994--15834839 Score: 750
Period size: 130 Copynumber: 6.6 Consensus size: 129
15833984 AACCAGTTTC
* * * * * * * **
15833994 TATGGTACGAGGGCATAATAATTCC-TTTGGCTATATGTCAATTTCTTATTATATAATGGGAAAG
1 TATGGTATGAAGGCATAAT-AGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAG
** * ** * * *
15834058 ACATTTTGGTAATTTTTTAGAAGATTATTTAGTAAATAATTATAAGAGAA-GAGGTATTTTTGTA
65 GTATTTTAGTAATTTCATAG-GGATTATTTAGTAAATAATTATAAAAGAAGGA-GTATTTTCGTA
15834122 AT
128 AT
* ** * * * * *
15834124 TATGATATGAAGGCATAATAGTCCATTTGGCTGCATGCCAATTTATTATCATATAATGGAAAGGG
1 TATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
* * * * *
15834189 CATTTTCA-TAATTTCATA--AATTATTTAGTAAAAAATTATTAAAGAAAGG-GTATTTTCATAA
66 TATTTT-AGTAATTTCATAGGGATTATTTAGTAAATAATTATAAAAG-AAGGAGTATTTTCGTAA
15834250 T
129 T
* *
15834251 TATGGTATG-TGAGCATAATAGTTCATTTGGCCACATGAT-AATTTCTAATCATATAATGAAAAA
1 TATGGTATGAAG-GCATAATAGTCCATTTGGCCACATG-TCAATTTCTAATCATATAATGAAAAA
* * * * *
15834314 GGGTATTTTTGTAATTTCATAAAGGATTATTTAGTAAATAATTATTAAAAAAAAG-GTATTTTAG
64 -GGTATTTTAGTAATTTCAT-AGGGATTATTTAGTAAATAATTA-TAAAAGAAGGAGTATTTTCG
*
15834378 TAAC
126 TAAT
* * * *
15834382 TATGGTATGACA-GCATAATAGTCCATTTAGCTACATGTCAATTTCTTATCATATAACGAAAAAG
1 TATGGTATGA-AGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAG
* * * * *
15834446 GCATTTTGGTAATTTCATAAAGGG-TTATTTAGTAAATAATTATAAGAGAATGAGTATTTTCATA
65 GTATTTTAGTAATTTCAT--AGGGATTATTTAGTAAATAATTATAAAAGAAGGAGTATTTTCGTA
15834510 AT
128 AT
* * * * * * * *
15834512 TATGCTATGAGGGCATAATCGTTCATTTGGACACATGTCAACTTCTTATCATATAATGAAAAAGA
1 TATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
* * * * *
15834577 TAATTTAGTAATTTAATGAGGGATTATTTAGT-AATAATTATAAAAGATGGAATATTTTTGTAAT
66 TATTTTAGTAATTTCAT-AGGGATTATTTAGTAAATAATTATAAAAGAAGGAGTATTTTCGTAAT
* * * * * *
15834641 TATGGTATAAAGGAATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATTTATTGGAAAGGG
1 TATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
* * * * *
15834706 T-TATT-GCTAATTTCATAGGTGATTATCTAGTAAATAATTATAAGAGAAGGGGTATTTTCGCAA
66 TATTTTAG-TAATTTCATAGG-GATTATTTAGTAAATAATTATAAAAGAAGGAGTATTTTCGTAA
15834769 T
129 T
* * * * * *
15834770 AATGGTATGAGGGCATAATATTTCATTTGGCCACATGTCAATTTCTAAT-ATATAATGGAAAGGG
1 TATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
15834834 TATTTT
66 TATTTT
15834840 CATAATTATA
Statistics
Matches: 583, Mismatches: 110, Indels: 47
0.79 0.15 0.06
Matches are distributed among these distances:
126 1 0.00
127 87 0.15
128 52 0.09
129 167 0.29
130 184 0.32
131 88 0.15
132 4 0.01
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (129 bp):
TATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGAAAAAGG
TATTTTAGTAATTTCATAGGGATTATTTAGTAAATAATTATAAAAGAAGGAGTATTTTCGTAAT
Found at i:15834719 original size:388 final size:386
Alignment explanation
Indices: 15834006--15834824 Score: 901
Period size: 388 Copynumber: 2.1 Consensus size: 386
15833996 TGGTACGAGG
* * **
15834006 GCATAATAATTCC-TTTGGCTATATGTCAATTTCTTATTATATAATGGGAAAGACATTTTGGTAA
1 GCATAAT-ATTCCATTTGGCTACATGTCAATTTCTTA-TATATAACGAAAAAGACATTTTGGTAA
** **
15834070 TTTTTTAGAAGATTATTTAGTAAATAATTATAAGAGAAGAGGTATTTTTGTAATTATGATATGAA
64 TTTCATAGAAGATTATTTAGTAAATAATTATAAGAGAAGAGGTATTTTCATAATTATGATATGAA
* * * * * *
15834135 GGCATAATAGTCCATTTGGCTGCATGCCAATTTATTATCATATAATGGAAAGGGCATTTTCATAA
129 GGCATAATAGTCCATTTGGCTACATGCCAACTTATTATCATATAATGAAAAAGACAATTTCATAA
* * * ** *
15834200 TTTCATAAATTATTTAGTAAAAAATTATTAAAGAAAGGGTATTTTCATAATTATGGTATGTGAGC
194 TTTAATAAATTATTTAGTAAAAAATTATAAAAGAAAGGATATTTTCATAATTATGGTATAAGAGA
* *
15834265 ATAATAGTTCATTTGGCCACATGATAATTTCTAATCATATAATGAAAAAGGGTATTTTTGTAATT
259 ATAATAGTCCATTTGGCCACATGATAATTTCTAATCATATAATGAAAAAGGG-ATTATTGTAATT
* *
15834330 TCATAAAG-GATTATTTAGTAAATAATTATTAA-AAAAAAGGTATTTTAGTAACT-ATGGTATGA
323 TCAT-AAGTGATTATCTAGTAAATAATTA-TAAGAAAAAAGGTATTTTAGCAA-TAATGGTATGA
15834392 CA
385 CA
* * *
15834394 GCATAATAGTCCATTTAGCTACATGTCAATTTCTTATCATATAACGAAAAAGGCATTTTGGTAAT
1 GCATAATATTCCATTTGGCTACATGTCAATTTCTTAT-ATATAACGAAAAAGACATTTTGGTAAT
* *
15834459 TTCATA-AAGGGTTATTTAGTAAATAATTATAAGAGAATGA-GTATTTTCATAATTATGCTATGA
65 TTCATAGAA-GATTATTTAGTAAATAATTATAAGAGAA-GAGGTATTTTCATAATTATGATATGA
* * * * * *
15834522 GGGCATAATCGTTCATTTGGAC-ACATGTCAACTTCTTATCATATAATGAAAAAGATAATTT-AG
128 AGGCATAATAGTCCATTTGG-CTACATGCCAACTTATTATCATATAATGAAAAAGACAATTTCA-
* * * **
15834585 TAATTTAATGAGGGATTATTTAGT-AATAATTATAAAAG-ATGGAATATTTTTGTAATTATGGTA
191 TAATTTAAT-A--AATTATTTAGTAAAAAATTATAAAAGAAAGG-ATATTTTCATAATTATGGTA
* * *
15834648 TAA-AGGAATAATAGTCCATTTGGCCACATG-TCAATTTCTAATCATTTATTG-GAAAGGG-TTA
252 TAAGA-GAATAATAGTCCATTTGGCCACATGAT-AATTTCTAATCATATAATGAAAAAGGGATTA
* * ** *
15834709 TTGCTAATTTCATAGGTGATTATCTAGTAAATAATTATAAGAGAAGGGGTATTTTCGCAATAATG
315 TTG-TAATTTCATAAGTGATTATCTAGTAAATAATTATAAGAAAAAAGGTATTTTAGCAATAATG
**
15834774 GTATGAGG
379 GTATGACA
* * *
15834782 GCATAATATTTCATTTGGCCACATGTCAATTTCTAATATATAA
1 GCATAATATTCCATTTGGCTACATGTCAATTTCTTATATATAA
15834825 TGGAAAGGGT
Statistics
Matches: 360, Mismatches: 55, Indels: 33
0.80 0.12 0.07
Matches are distributed among these distances:
387 25 0.07
388 240 0.67
389 15 0.04
390 70 0.19
391 10 0.03
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (386 bp):
GCATAATATTCCATTTGGCTACATGTCAATTTCTTATATATAACGAAAAAGACATTTTGGTAATT
TCATAGAAGATTATTTAGTAAATAATTATAAGAGAAGAGGTATTTTCATAATTATGATATGAAGG
CATAATAGTCCATTTGGCTACATGCCAACTTATTATCATATAATGAAAAAGACAATTTCATAATT
TAATAAATTATTTAGTAAAAAATTATAAAAGAAAGGATATTTTCATAATTATGGTATAAGAGAAT
AATAGTCCATTTGGCCACATGATAATTTCTAATCATATAATGAAAAAGGGATTATTGTAATTTCA
TAAGTGATTATCTAGTAAATAATTATAAGAAAAAAGGTATTTTAGCAATAATGGTATGACA
Found at i:15834840 original size:76 final size:77
Alignment explanation
Indices: 15834755--15834916 Score: 193
Period size: 76 Copynumber: 2.1 Consensus size: 77
15834745 ATAAGAGAAG
* ** * * *
15834755 GGGTATTTTCGCAATAATGGTATGAGGGCATAATATTTC-ATTTGGCCACATGTCAATTTC-TAA
1 GGGTATTTTCACAATAATAATATGAGGGCATAATA-GTCAATTTAGCCACATGTAAATTTCTTAA
*
15834818 TATATAATGGAAA
65 CATATAATGGAAA
* * * *
15834831 GGGTATTTTCATAATTATAATATGAGGGCATAATAGTCAATTTATCTACATGTAAATTTCTTAAC
1 GGGTATTTTCACAATAATAATATGAGGGCATAATAGTCAATTTAGCCACATGTAAATTTCTTAAC
15834896 ATATAATGGAAA
66 ATATAATGGAAA
*
15834908 GGGCATTTT
1 GGGTATTTT
15834917 GGTAATTTTT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
75 2 0.03
76 47 0.65
77 23 0.32
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (77 bp):
GGGTATTTTCACAATAATAATATGAGGGCATAATAGTCAATTTAGCCACATGTAAATTTCTTAAC
ATATAATGGAAA
Found at i:15835134 original size:130 final size:129
Alignment explanation
Indices: 15834827--15836565 Score: 1178
Period size: 129 Copynumber: 13.4 Consensus size: 129
15834817 ATATATAATG
* * * *
15834827 GAAAGGGTATTTTCATAATTATAATATGAGGGCATAATAGTCAATTT-ATCTACATGTAAATTTC
1 GAAA-GGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTC-ACATGTCAATTTC
* * * *
15834891 TTAACATATAATGGAAAGGGCATTTTGGTAATTTT-T-AGGGCATTATTTAGCAAAAAATTATAA
64 TTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGG-ATTATTTAGTAAATAATTATAA
15834954 GA
128 GA
* * * * *
15834956 GAAAGGTTATTTTTC-TAATTATGGTATAAGGGCACAATAG-CCAATTTGGTCACCTATCAATTT
1 GAAAGG-TA-TTTTCATAATTATGATATGAGGGCATAATAGTCC-ATTTGGTCACATGTCAATTT
* ** * * *
15835019 CTTATCATATAATGGAAATGGTATTTTAATAATTTTATAAGTGATTTTTTACTAAATAATTATAA
63 CTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTAGTAAATAATTATAA
15835084 GA
128 GA
** * * *
15835086 GAATAGGTATTTTCATAATTATGATATGAGGGCATAATAGTCTTTTTGGCCACTTGTTAATTTCT
1 GAA-AGGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCT
* * * * * *
15835151 TAACATATAATGAAAAAGGCATTTTGGTAATTTTAT-AGGCTATTATTTATTAAATAATTATAA-
65 TATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGG-GATTATTTAGTAAATAATTATAAG
15835214 A
129 A
* * * * * * * * *
15835215 GGAAGGGGT-TTTTCATAATTATTATATAAGGGCATAATGGTCAATATGGCCACATGTTAATTTT
1 -GAA-AGGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTCACATGTCAATTTC
* * *
15835279 TTATCATATAATGGAAATGGTATTTTGGTAATTTCAT-AGGAGATTATTTAGTAAAGAATTATAA
64 TTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGG-GATTATTTAGTAAATAATTATAA
15835343 GA
128 GA
* ** * ** * ** *
15835345 GAAAGGGTGTTTTTGTAATTATGACT-TGAAGGCATGTTGGTTAATTTGGTAACATGTCAATTTC
1 GAAA-GGTATTTTCATAATTATGA-TATGAGGGCATAATAGTCCATTTGGTCACATGTCAATTTC
* * ** *
15835409 TTATCATATAATGGAAGGGGCATTTTTTCTAATTTCT-TAAGGGATAATTTCA--AAATTAATTA
64 TTATCATATAATGGAAAGGGTA-TTTTGGTAATTT-TATAAGGGATTATTT-AGTAAA-TAATTA
15835471 T-AGA
125 TAAGA
* * * * * ***
15835475 TTAAAGGGTATTATT-GTAATTATCATTTGAGGGCATAATAGTCCATTTGGCCTGGTGTCAATTT
1 -GAAA-GGTATT-TTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTCACATGTCAATTT
* ** * * * *
15835539 CTTATCATATCATGGAAAATGTATTTTAGTAATTTCT-TGAGGGATTATTTAGTAAATGACTATA
63 CTTATCATATAATGGAAAGGGTATTTTGGTAATTT-TATAAGGGATTATTTAGTAAATAATTATA
15835603 AGA
127 AGA
* * * * * * *
15835606 GAAGGGGTATTTTCGA-AATTATGGTATGAAGGCCTAATAGTCCATCTAGTCACTTGTCAATTTC
1 GAA-AGGTATTTTC-ATAATTATGATATGAGGGCATAATAGTCCATTTGGTCACATGTCAATTTC
* * * ** * *
15835670 TAATCATACAATGGAACA-AGTATTTTCATAATTTTGT-AGGAGATTATTTAGTAAATAATTATT
64 TTATCATATAATGGAA-AGGGTATTTTGGTAATTTTATAAGG-GATTATTTAGTAAATAATTATA
15835733 AGA
127 AGA
* ** * * * *
15835736 GACAGGGT-TTTTTGTAATTATGGTACGAGGGCATAATAGTCCATTTGG-CTAAACT-TTAATTT
1 GA-AAGGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTC-ACA-TGTCAATTT
** * * * *
15835798 CTTATCATATAATGGAAAAAGCATTTTAGTAATTTTGTAGGGGATTATTTAGTAAATAATTATAA
63 CTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTAGTAAATAATTATAA
15835863 -A
128 GA
** * * * * *
15835864 -AAAGGGTATTTTTGTAACTATGATATGAGGGTACAATAGTCCATTTGG-CTACTTGTTAATTTC
1 GAAA-GGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTC-ACATGTCAATTTC
* * * *** * *
15835927 TTATCATCTAATGGAAAAGGGCATTTTGATAATTTCCCAAAGGATTATTTATTAAATAATTATAA
64 TTATCATATAATGG-AAAGGGTATTTTGGTAATTTTATAAGGGATTATTTAGTAAATAATTATAA
15835992 GA
128 GA
* * * * * * *
15835994 GAAGGGTATTTTCATAATTATGGTATAAAGGCATGATAGTCCATTTCGTCGCATGTCAATTTCTT
1 GAAAGGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTT
* * * * *
15836059 ATCATATAATGGAAAGGTTATTTTGGTAATTTAATAAAGGATTATTGAAT-AATAATTATAAGA
66 ATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTAGTAAATAATTATAAGA
* * * * *
15836122 GAAGGGGTACTTTCATAATTATGGTAT-AGGAGAATAATAGTCCATTTGGTCAC-TAGCCAATTT
1 GAA-AGGTATTTTCATAATTATGATATGAGG-GCATAATAGTCCATTTGGTCACAT-GTCAATTT
* * * *** * ** * *
15836185 CTTATCATGTAATGTACAGGGTATTTCATTAATTTCATAAAAGATTTTTTTAATAAATAATTATA
63 CTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGA-TTATTTAGTAAATAATTATA
15836250 AGA
127 AGA
* ** * * *
15836253 GAAAGGGTATTTT-TTGAAATTAT-AGTATGAGGAAATAATAGTCAATTTGGTCACATATTAACT
1 GAAA-GGTATTTTCAT--AATTATGA-TATGAGGGCATAATAGTCCATTTGGTCACATGTCAA-T
* * * * *
15836316 TT-TTATCATATAATGAAAATGGTATTTTGGTTATTTAAT-AGTGATTATTTAG-AAATAATTAT
61 TTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTAGTAAATAATTAT
*
15836378 AAAA
126 AAGA
* * * * **** * * *
15836382 GAAGGGGTATTCTCGTAATTATGGTATGACAAAATAATTA-TCCATCTAGCCACATGTCAATTTC
1 GAA-AGGTATTTTCATAATTATGATATGAGGGCATAA-TAGTCCATTTGGTCACATGTCAATTTC
* * * * * * *
15836446 TTAGCATGTAATGGAAAAGGT-TCTTGAG-AAATTCATAAGGGATCATTTAGTAAATAATTATAT
64 TTATCATATAATGGAAAGGGTATTTTG-GTAATTTTATAAGGGATTATTTAGTAAATAATTATA-
15836509 A-A
127 AGA
* ** * * * * *
15836511 -AAAGGGTTATTTTCGTTGTTATGATATAAGGACATAACAGTACATTTGGACACAT
1 GAAA-GG-TATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTCACAT
15836566 ATCACCTTTT
Statistics
Matches: 1278, Mismatches: 263, Indels: 138
0.76 0.16 0.08
Matches are distributed among these distances:
126 1 0.00
127 17 0.01
128 149 0.12
129 508 0.40
130 400 0.31
131 131 0.10
132 65 0.05
133 7 0.01
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (129 bp):
GAAAGGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTT
ATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTAGTAAATAATTATAAGA
Found at i:15835236 original size:259 final size:258
Alignment explanation
Indices: 15834832--15836565 Score: 1138
Period size: 259 Copynumber: 6.7 Consensus size: 258
15834822 TAATGGAAAG
* * ** * * *
15834832 GGTATTTTCATAATTATAATATGAGGGCATAATAGTCAATTTATCTACATGTAAATTTCTTAACA
1 GGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGCCACTTGTCAATTTCTTAACA
* * * * *
15834897 TATAATGGAAAGGGCATTTTGGTAATTT-T-TAGGGCATTATTTAGCAAAAAATTATAAGAGAAA
66 TATAATGAAAAGGGCATTTTGATAATTTCTATA-GG-ATTATTTAGTAAATAATTATAA-AGGAA
** * * *
15834960 GGTTATTTTTC-TAATTATGGTATAAGGGCACAATAG-CCAATTTGGTCACCTATCAATTTCTTA
128 GG-GGTTTTTCATAATTATGGTATAAGGGCATAATAGTCC-ATTTGGTCACATGTCAATTTCTTA
* * * *
15835023 TCATATAATGGAAATGGTATTTTAATAATTTTATAAGTGATTTTTTACTAAATAATTATAAGAGA
191 TCATATAATGGAAATGGTATTTTAGTAATTTTATAAGGGATTATTTAGTAAATAATTATAAGAGA
*
15835088 ATA
256 AGA
** *
15835091 GGTATTTTCATAATTATGATATGAGGGCATAATAGTCTTTTTGGCCACTTGTTAATTTCTTAACA
1 GGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGCCACTTGTCAATTTCTTAACA
* * *
15835156 TATAATGAAAAAGGCATTTTGGTAATTT-TATAGGCTATTATTTATTAAATAATTATAAAGGAAG
66 TATAATGAAAAGGGCATTTTGATAATTTCTATAGG--ATTATTTAGTAAATAATTATAAAGGAAG
** * * * * * *
15835220 GGGTTTTTCATAATTATTATATAAGGGCATAATGGTCAATATGGCCACATGTTAATTTTTTATCA
129 GGGTTTTTCATAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCA
* * *
15835285 TATAATGGAAATGGTATTTTGGTAATTTCAT-AGGAGATTATTTAGTAAAGAATTATAAGAGAA-
194 TATAATGGAAATGGTATTTTAGTAATTTTATAAGG-GATTATTTAGTAAATAATTATAAGAGAAG
15835348 A
258 A
* ** * ** * ** ** * *
15835349 GGGTGTTTTTGTAATTATGACT-TGAAGGCATGTTGGTTAATTTGGTAACATGTCAATTTCTTAT
1 -GGTATTTTCATAATTATGA-TATGAGGGCATAATAGTCCATTTGGCCACTTGTCAATTTCTTAA
* * ** * *
15835413 CATATAATGGAAGGGGCATTTTTTCTAATTTCT-TAAGGGATAATTTCA--AAATTAATTATAGA
64 CATATAATGAAAAGGGCA-TTTTGATAATTTCTAT-A-GGATTATTT-AGTAAA-TAATTATAAA
** * * ** * * * ***
15835475 TTAAAGGGTATTATT-GTAATTATCATTTGAGGGCATAATAGTCCATTTGGCCTGGTGTCAATTT
124 GGAAGGGGT-TT-TTCATAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTT
* * * *
15835539 CTTATCATATCATGGAAAAT-GTATTTTAGTAATTTCT-TGAGGGATTATTTAGTAAATGACTAT
187 CTTATCATATAATGG-AAATGGTATTTTAGTAATTT-TATAAGGGATTATTTAGTAAATAATTAT
*
15835602 AAGAGAAGG
250 AAGAGAAGA
* * * * * *
15835611 GGTATTTTCGA-AATTATGGTATGAAGGCCTAATAGTCCATCTAGTCACTTGTCAATTTC-TAAT
1 GGTATTTTC-ATAATTATGATATGAGGGCATAATAGTCCATTTGGCCACTTGTCAATTTCTTAA-
* * * * *
15835674 CATACAATGGAACAA--GTATTTTCATAATTT-TGTAGGAGATTATTTAGTAAATAATTAT-TAG
64 CATATAAT-GAA-AAGGGCATTTTGATAATTTCTATA-G-GATTATTTAGTAAATAATTATAAAG
** ** * *
15835735 AGACA-GGGTTTTTTGTAATTATGGTACGAGGGCATAATAGTCCATTTGG-CTAAACT-TTAATT
125 -GA-AGGGGTTTTTCATAATTATGGTATAAGGGCATAATAGTCCATTTGGTC-ACA-TGTCAATT
** * * *
15835797 TCTTATCATATAATGGAAAAAGCATTTTAGTAATTTTGTAGGGGATTATTTAGTAAATAATTATA
186 TCTTATCATATAATGGAAATGGTATTTTAGTAATTTTATAAGGGATTATTTAGTAAATAATTATA
*
15835862 A-AAAAG-
251 AGAGAAGA
** * * * * * *
15835868 GGTATTTTTGTAACTATGATATGAGGGTACAATAGTCCATTTGGCTACTTGTTAATTTCTTATCA
1 GGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGCCACTTGTCAATTTCTTAACA
* * * *
15835933 TCTAATGGAAAAGGGCATTTTGATAATTTCCCAAAGGATTATTTATTAAATAATTAT-AAGAGAA
66 TATAAT-GAAAAGGGCATTTTGATAATTT-CTATAGGATTATTTAGTAAATAATTATAAAG-GAA
* * * *
15835997 -GGGTATTTTCATAATTATGGTATAAAGGCATGATAGTCCATTTCGTCGCATGTCAATTTCTTAT
128 GGGGT-TTTTCATAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTAT
* * * * *
15836061 CATATAATGGAAA-GGTTATTTTGGTAATTTAATAAAGGATTATTGAAT-AATAATTATAAGAGA
192 CATATAATGGAAATGG-TATTTTAGTAATTTTATAAGGGATTATTTAGTAAATAATTATAAGAGA
*
15836124 AGG
256 AGA
* * * * * * *
15836127 GGTACTTTCATAATTATGGTAT-AGGAGAATAATAGTCCATTTGGTCACTAGCCAATTTCTTATC
1 GGTATTTTCATAATTATGATATGAGG-GCATAATAGTCCATTTGGCCACTTGTCAATTTCTTAAC
* * * * * * * * * *
15836191 ATGTAATGTACAGGGTA-TTTCATTAATTTCATAAAAGATTTTTTTAATAAATAATTATAAGAGA
65 ATATAATGAAAAGGGCATTTTGA-TAATTTC-TATAGGA-TTATTTAGTAAATAATTATAA-AGG
* * * * ** * * *
15836255 AAGGGTATTTTTTGA-AATTATAGTATGAGGAAATAATAGTCAATTTGGTCACATATTAACTTT-
126 AAGGG--GTTTTTCATAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAA-TTTC
* * * * * *
15836318 TTATCATATAATGAAAATGGTATTTTGGTTATTTAAT-AGTGATTATTTAG-AAATAATTATAAA
188 TTATCATATAATGGAAATGGTATTTTAGTAATTTTATAAGGGATTATTTAGTAAATAATTATAAG
*
15836381 AGAAGG
253 AGAAGA
* * * **** * * * *
15836387 GGTATTCTCGTAATTATGGTATGACAAAATAATTA-TCCATCTAGCCACATGTCAATTTCTTAGC
1 GGTATTTTCATAATTATGATATGAGGGCATAA-TAGTCCATTTGGCCACTTGTCAATTTCTTAAC
* * * *
15836451 ATGTAATGGAAAA-GG--TTCTTGAGAAATTC-ATAAGGGATCATTTAGTAAATAATTATATAA-
65 ATATAAT-GAAAAGGGCATT-TTGATAATTTCTAT-A-GGATTATTTAGTAAATAATTATA-AAG
* * * ** * * * * *
15836511 AAAGGGTTATTTTCGTTGTTATGATATAAGGACATAACAGTACATTTGGACACAT
125 GAAGGGGT-TTTTCATAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACAT
15836566 ATCACCTTTT
Statistics
Matches: 1166, Mismatches: 240, Indels: 140
0.75 0.16 0.09
Matches are distributed among these distances:
255 2 0.00
256 6 0.01
257 114 0.10
258 186 0.16
259 430 0.37
260 177 0.15
261 226 0.19
262 23 0.02
263 2 0.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (258 bp):
GGTATTTTCATAATTATGATATGAGGGCATAATAGTCCATTTGGCCACTTGTCAATTTCTTAACA
TATAATGAAAAGGGCATTTTGATAATTTCTATAGGATTATTTAGTAAATAATTATAAAGGAAGGG
GTTTTTCATAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATA
TAATGGAAATGGTATTTTAGTAATTTTATAAGGGATTATTTAGTAAATAATTATAAGAGAAGA
Found at i:15836456 original size:260 final size:258
Alignment explanation
Indices: 15835974--15836458 Score: 576
Period size: 260 Copynumber: 1.9 Consensus size: 258
15835964 CAAAGGATTA
* * * * *
15835974 TTTATTAAATAATTATAAGAGAAGGGTATTTTCATAATTATGGTATAAAGGCATGATAGTCCATT
1 TTTAATAAATAATTATAAGAGAAGGGTATTTTCATAATTATAGTATAAAGGAATAATAGTCAATT
* * *
15836039 TCGTCGCATGTCAATTTCTTATCATATAATGGAAAGGTTATTTTGGTAATTTAATAAAGGATTAT
66 TCGTCACATATCAATTTCTTATCATATAATGAAAAGGTTATTTTGGTAATTTAAT-AAGGATTAT
* * * *
15836104 TGAATAATAATTATAAGAGAAGGGGTACTTTCATAATTATGGTATAGGAGAATAATAGTCCATTT
130 TGAATAATAATTATAAAAGAAGGGGTACTTTCATAATTATGGTATAGCAAAATAATAGTCCATCT
* * *
15836169 GGTCACTAGCCAATTTCTTATCATGTAATGTACAGGGTATTTCATTAATTTCATAAAAGATTTT
195 AGCCACTAGCCAATTTCTTAGCATGTAATGTACAGGGTATTTCATTAATTTCATAAAAGATTTT
* *
15836233 TTTAATAAATAATTATAAGAGAAAGGGTATTTT-TTGAAATTATAGTAT-GAGGAAATAATAGTC
1 TTTAATAAATAATTATAAGAG-AAGGGTATTTTCAT--AATTATAGTATAAAGG-AATAATAGTC
* * *
15836296 AATTTGGTCACATATTAACTTT-TTATCATATAATGAAAATGG-TATTTTGGTTATTTAAT-AGT
62 AATTTCGTCACATATCAA-TTTCTTATCATATAATGAAAA-GGTTATTTTGGTAATTTAATAAG-
* *
15836358 GATTATTTAGA-AATAATTATAAAAGAAGGGGTA-TTCTCGTAATTATGGTAT-GACAAAATAAT
124 GATTATTGA-ATAATAATTATAAAAGAAGGGGTACTT-TCATAATTATGGTATAG-CAAAATAA-
*
15836420 TA-TCCATCTAGCCAC-ATGTCAATTTCTTAGCATGTAATG
185 TAGTCCATCTAGCCACTA-GCCAATTTCTTAGCATGTAATG
15836459 GAAAAGGTTC
Statistics
Matches: 191, Mismatches: 23, Indels: 23
0.81 0.10 0.10
Matches are distributed among these distances:
259 27 0.14
260 93 0.49
261 66 0.35
262 5 0.03
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (258 bp):
TTTAATAAATAATTATAAGAGAAGGGTATTTTCATAATTATAGTATAAAGGAATAATAGTCAATT
TCGTCACATATCAATTTCTTATCATATAATGAAAAGGTTATTTTGGTAATTTAATAAGGATTATT
GAATAATAATTATAAAAGAAGGGGTACTTTCATAATTATGGTATAGCAAAATAATAGTCCATCTA
GCCACTAGCCAATTTCTTAGCATGTAATGTACAGGGTATTTCATTAATTTCATAAAAGATTTT
Found at i:15836890 original size:130 final size:129
Alignment explanation
Indices: 15836671--15837492 Score: 743
Period size: 130 Copynumber: 6.3 Consensus size: 129
15836661 TTTATAGGAA
* * * *
15836671 ATTATTTAGTAAATAATTGTTAGAGAAAAGGTATTTTTGTAATTATGATACGAGGGCATAATAGT
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTTATAATTATGATATGAGGGCATAATAGT
* ** * * * *
15836736 TCATTAAGCTC-TATGTCAATTTCTTATTATATAATAAGAAAAGCATTTTGGTAATTTTC-TATG
66 CCATTTGGC-CACATGTCAATTTCTTATCATATAAT-GGAAAAGCATTTTGGTAA-TTTCATAAG
15836799 GG
128 GG
* * * * * *
15836801 ATTATTTAGTAAATAATTATATGGGAATAGGTATTTTCATAATTATAATATGAGGGTATAATAGT
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTTATAATTATGATATGAGGGCATAATAGT
* * *
15836866 CCATTTGGCTACATTTCAATTTCTTATCATATAATGGAAAGTGCATTTTGGTAATTTCATAAAGG
66 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-AGCATTTTGGTAATTTCAT-AAGG
15836931 G
129 G
* * * * * **
15836932 -TTATTTAGCAAATAATTATAAGAGAAAAGGCATTTTTGTAATTATGGTATAAGAACATAATAGT
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTTATAATTATGATATGAGGGCATAATAGT
* * * * *
15836996 CCATTTGGCCACATTTCAATTTCTTATCATATAACT-GAAAAGGTATTTTAGTAATTTCTTAAGA
66 CCATTTGGCCACATGTCAATTTCTTATCATATAA-TGGAAAA-GCATTTTGGTAATTTCATAAGG
15837060 G
129 G
* * * *
15837061 A-TATTTTAGTAAATAATTACAAGAGAAAAGGTACTCTTATAATTATGGTATGAGGGCATAATAG
1 ATTA-TTTAGTAAATAATTATAAGAGAAAAGGTATTTTTATAATTATGATATGAGGGCATAATAG
* * *
15837125 TCAATTTGGCCACACT-TCAATTT-TTATCATACAATGGAAAAGGCATTTTTGGCAATTTCAT-A
65 TCCATTTGGCCACA-TGTCAATTTCTTATCATATAATGGAAAA-GCA-TTTTGGTAATTTCATAA
15837187 GGTG
127 GG-G
* * ** ** * * *
15837191 ATTATTTATTAAATAATTATAACAGAAGGGGTATTTCCATAATTATTG-TATGAAGGAACAATAG
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTTATAATTA-TGATATGAGGGCATAATAG
** *
15837255 -CCAAAGTGGCCACATGTCAATTTCTTATCATATAATGGAAATG-ATATTGTGGTAATTTCATAA
65 TCC-ATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGCAT-TT-TGGTAATTTCATAA
15837318 GGG
127 GGG
* * * * ** *
15837321 ATTTTTTAGTAAATAATTATAAGAGAAAGGGTATTTTTGTAATTATGATATAAATGCATAATGGT
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTTATAATTATGATATGAGGGCATAATAGT
* * * * * * ** **
15837386 CAATTTGGCTACACGTCAATTTTTTATCATATCA-GGAAAATGGTATTTTTATAATTTCATAATA
66 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAA--GCATTTTGGTAATTTCATAAGG
15837450 G
129 G
* * *
15837451 ATTATTTAG-AAATTAATTATAAGTGAAAGGGTATTTTCATAA
1 ATTATTTAGTAAA-TAATTATAAGAGAAAAGGTATTTTTATAA
15837493 AGTATATAAG
Statistics
Matches: 565, Mismatches: 101, Indels: 52
0.79 0.14 0.07
Matches are distributed among these distances:
128 2 0.00
129 49 0.09
130 479 0.85
131 33 0.06
132 2 0.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (129 bp):
ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTTATAATTATGATATGAGGGCATAATAGT
CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGCATTTTGGTAATTTCATAAGGG
Found at i:15837134 original size:260 final size:257
Alignment explanation
Indices: 15836671--15840050 Score: 2223
Period size: 260 Copynumber: 13.1 Consensus size: 257
15836661 TTTATAGGAA
* * ** * **
15836671 ATTATTTAGTAAATAATTGTTAGAGAAAAGGTATTTTTGTAATTATGATACGAGGGCATAATAGT
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTCATAATTATGGTATAAGGGCATAATAGT
* ** * * * * *
15836736 TCATTAAGCTC-TATGTCAATTTCTTATTATATAATAAGAAAA-GCATTTTGGTAATTTTC-TAT
66 CCATTTGGC-CACATGTCAATTTCTTATCATATAAT-GGAAAAGGTATTTTGGTAA-TTTCATAA
* * * ** *
15836798 GGGATTATTTAGTAAATAATTATATGGGAATA-GGTATTTTCATAATTATAATATGAGGGTATAA
128 GAGATT-TTTAGTAAATAATTATAAGAGAA-AGGGTATTTT-ATAATTATGGTATGAGGGCATAA
* *
15836862 TAGTCCATTTGGCTACATTTCAATTTCTTATCATATAATGGAAAGTGCATTTTGGTAATTTCATA
190 TAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAG-GCATTTTGGTAATTTCAT-
15836927 AAGGG
253 AAGGG
* * ** **
15836932 -TTATTTAGCAAATAATTATAAGAGAAAAGGCATTTTTGTAATTATGGTATAAGAACATAATAGT
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTCATAATTATGGTATAAGGGCATAATAGT
* * *
15836996 CCATTTGGCCACATTTCAATTTCTTATCATATAACT-GAAAAGGTATTTTAGTAATTTCTTAAGA
66 CCATTTGGCCACATGTCAATTTCTTATCATATAA-TGGAAAAGGTATTTTGGTAATTTCATAAGA
* * *
15837060 GATATTTTAGTAAATAATTACAAGAGAAAAGGTACTCTTATAATTATGGTATGAGGGCATAATAG
130 GAT-TTTTAGTAAATAATTATAAGAGAAAGGGTA-TTTTATAATTATGGTATGAGGGCATAATAG
* * *
15837125 TCAATTTGGCCACACT-TCAATTT-TTATCATACAATGGAAAAGGCATTTTTGGCAATTTCAT-A
193 TCCATTTGGCCACA-TGTCAATTTCTTATCATATAATGG-AAAGGCA-TTTTGGTAATTTCATAA
15837187 GGTG
255 GG-G
* * ** * * * *
15837191 ATTATTTATTAAATAATTATAACAGAAGGGGTATTTCCATAATTATTGTATGAA-GGAACAATAG
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTCATAATTATGGTAT-AAGGGCATAATAG
** * * *
15837255 -CCAAAGTGGCCACATGTCAATTTCTTATCATATAATGGAAATGATATTGTGGTAATTTCATAAG
65 TCC-ATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTTCATAAG
* * * * ** *
15837319 GGATTTTTTAGTAAATAATTATAAGAGAAAGGGTATTTTTGTAATTATGATATAAATGCATAATG
129 AGA-TTTTTAGTAAATAATTATAAGAGAAAGGGTA-TTTTATAATTATGGTATGAGGGCATAATA
* * * * * * **
15837384 GTCAATTTGGCTACACGTCAATTTTTTATCATATCA-GGAAAATGGTATTTTTATAATTTCATAA
192 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG-AAA-GGCATTTTGGTAATTTCATAA
**
15837448 TAG
255 GGG
* * *
15837451 ATTATTTAG-AAATTAATTATAAGTGAAAGGGTATTTTCATAA--A-GTATATAAGGG-AT--T-
1 ATTATTTAGTAAA-TAATTATAAGAGAAAAGGTATTTTCATAATTATG-GTATAAGGGCATAATA
* * *
15837508 -T---TTAT----A-ATGT--A-----TATTAT-TAATGAAAAAGGTATTGTT-GTAATTTTATA
64 GTCCATT-TGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATT-TTGGTAATTTCATA
* * * * * * *
15837555 AGGGATTATTTAATAAATAATTATTAGAGAAAGTGTATTTTTGTAATTGTCGTATGAGGGCATAA
127 AGAGATT-TTTAGTAAATAATTATAAGAGAAAGGGTA-TTTTATAATTATGGTATGAGGGCATAA
** ** ** *
15837620 TAGTTTATTTATCCACATGTCAATTTCTTATCATATAATGAGAAAGGCATTTTGGTAATTTTTTT
190 TAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATG-GAAAGGCATTTTGGTAATTTCATA
15837685 AGGG
254 AGGG
* * ** * * * *
15837689 AATATTTCA-TAAATAATTATAAAAGAATGGGTATTTTCGTAATTATGATACAAGGGCACAATAG
1 ATTATTT-AGTAAATAATTATAAGAGAAAAGGTATTTTCATAATTATGGTATAAGGGCATAATAG
*** * *
15837753 TCCATTTGGCTGTATGTCAATTTCTTATCATATAACT-GAAAGGGTATTTTTGTAATTTCAT-AG
65 TCCATTTGGCCACATGTCAATTTCTTATCATATAA-TGGAAAAGGTATTTTGGTAATTTCATAAG
* * * * * ***
15837816 A-CTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTCATAATTATTGTATGTGGATGTAATAG
129 AGATTTTTAGTAAATAATTATAAGAGAAAGGGTATTTT-ATAATTATGGTATGAGGGCATAATAG
* * * * * * * **
15837880 TTCATTTGGCCACAAGGCAATTTCTAATCATATACTAGAAAGGGTATTTTTATAATTTCAT-AGG
193 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-GGCATTTTGGTAATTTCATAAGG
15837944 G
257 G
* * * * *
15837945 AATTATTTAGTAAATAATTATTAA-AGAAATGGTAATTT-AGTAACTATGGTACAACGGCATAAT
1 -ATTATTTAGTAAATAATTA-TAAGAGAAAAGGTATTTTCA-TAATTATGGTATAAGGGCATAAT
* * * ** *
15838008 AGTCCATTTAGCTACATGGCAATTTCTTATCATATAATGGAAGGGGCATTTTGGTAATTTCAT-A
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTTCATAA
* * * * * * * *
15838072 GAGGGTTATTTAGTCAATAATTATAAAAGAAGGGGTATCTTGTAATTATGATATGAGGGCATACT
128 GA-GATT-TTTAGTAAATAATTATAAGAGAAAGGGTATTTTATAATTATGGTATGAGGGCATAAT
* * * ** * *
15838137 AGT-CATTTGGCCATATGTC-ATTTCTTATCATATAATAGAAAAGGCTTTTTAATAATTTCGTAT
191 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAAT-GGAAAGGCATTTTGGTAATTTCATAA
15838200 GGG
255 GGG
* * *
15838203 ATTTTTTTAGTAAATAATTATAAGA-AAAATGGTATTTTCATTATTATAGTATGAA-GGCATAAT
1 A-TTATTTAGTAAATAATTATAAGAGAAAA-GGTATTTTCATAATTATGGTAT-AAGGGCATAAT
* * * * *
15838266 TGTCCTTTTGGCCACATGTCAATCTCTTATCATATAAT-GAAAATGGCATTTTGGTAATTTCACA
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAA-GGTATTTTGGTAATTTCATA
** * * * ** *
15838330 AGCA-ATTATTTAAAAAATAATTATAAGATAAGGGGTTTTTTTATAATTATTATATGGGGGCATA
127 AG-AGATT-TTTAGTAAATAATTATAAGAGAAAGGG-TATTTTATAATTATGGTATGAGGGCATA
* * * * * *
15838394 TTAGTCAATGTGGTCACATGTCAATTTCTTATCATATAGTGGAAA--CATTTTGGTAAATTCATA
189 ATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGCATTTTGGTAATTTCATA
15838457 AGGG
254 AGGG
* * * * * * * *
15838461 ATTATTTAGTAAATAAATATGAGAGAATAGGTATTTTTATAATTATGATTTTAGGGCATAATGGT
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTCATAATTATGGTATAAGGGCATAATAGT
* * * ** * * * * ** *
15838526 CAATTTGGCAACATGTCATTTTCTTATTGTTTAATGGAGAGGGCATTTTTCTAATTT-TTAAGGA
66 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTTCATAA-GA
* * * * * * * *
15838590 GATTATTTA-AAAATTAATTGTAGGTGTAGGGGTATTTTAGTAATTATGGTATGAAGACATAATA
130 GATT-TTTAGTAAA-TAATTATAAGAGAAAGGGTATTTTA-TAATTATGGTATGAGGGCATAATA
** * * *** *
15838654 GTCCATTTGGCCAGGTGCCAATTTCTTATCATA-ACATAGAAAATTTATTTTAGTAATTTC-TCA
192 GTCCATTTGGCCACATGTCAATTTCTTATCATATA-AT-GGAAAGGCATTTTGGTAATTTCAT-A
*
15838717 AGTG
254 AGGG
* * *
15838721 ATTATTTAGTAAATAATTATATA-AGAAGAGGTATTTTTGA-AATTATGGTATGAGGGCATAATA
1 ATTATTTAGTAAATAATTATA-AGAGAAAAGGTA-TTTTCATAATTATGGTATAAGGGCATAATA
* ** * * * * * *
15838784 ATTGATTTGGCTATATGTCAATTTCTAATCATATAATTG-AAAGAGTATTTTTGTAATTTCATAG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAG-GTATTTTGGTAATTTCATAA
* * * *
15838848 GTA-ATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTTGTAATTATGGTACGATGGCATAA
128 G-AGATT-TTTAGTAAATAATTATAAGAGAAAGGGTA-TTTTATAATTATGGTATGAGGGCATAA
* * * ** * **
15838912 TAGTCCATTTCGCTAAATGTCAATTTCTTATCATGCAATGGAAAAGGCATTTTAGTAATTTTTTA
190 TAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG-AAAGGCATTTTGGTAATTTCATA
15838977 AGGG
254 AGGG
* * * *** * * ***
15838981 ATTATTTAGTAAATAATTATAATAG-AAGGGCATTTTTGCAGTTATGATATAAGGGTGCAATAGT
1 ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTCATAATTATGGTATAAGGGCATAATAGT
**** * * * *
15839045 CCA-TTCATTACATGTCAATTTCTTATTATATAATGGAAATGGGTAATTTGGTAATTTCATAGGA
66 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-AGGTATTTTGGTAATTTCATAAGA
* * * * **
15839109 GATTATTTTGTAAATAATTATAAGAG-AAGGGATATTTTCATAATTGTTGTATAACAGCATAATA
130 GATT-TTTAGTAAATAATTATAAGAGAAAGGG-TATTTT-ATAATTATGGTATGAGGGCATAATA
** * * * * *
15839173 GTCCATTTCACCACTTGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTTAATAAA
192 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG-AAAGGCATTTTGGTAATTTCATAAG
*
15839238 AG
256 GG
* * * * * *
15839240 ATTATTTAAT-TATAAATA-AATGAGAAAAGGTGTTTTCATAATTATGGTAT-GGGGAATAATAG
1 ATTATTTAGTAAATAATTATAA-GAGAAAAGGTATTTTCATAATTATGGTATAAGGGCATAATAG
** * * * * *
15839302 TCCATTTAACTACAAGTCAATTTCTTATCATGTAATGTAAAAGGTATTTTGTTAAATTT-ATAAG
65 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTGGT-AATTTCATAAG
* ** * ** **
15839366 AGATTTTTTAGTAAATAATTACAAGAG-AAGAGGTATTTTCATAATTATAATACGATAGTGTAAT
129 AGA-TTTTTAGTAAATAATTATAAGAGAAAG-GGTATTTT-ATAATTATGGTATGAGGGCATAAT
* * * * * *
15839430 AGT-AAGTTTGGCCAAATCT-AATTTGC-TAACATATAATGGAAACGGCATTTTGGCAATTTCTT
191 AGTCCA-TTTGGCCACATGTCAATTT-CTTATCATATAATGGAAA-GGCATTTTGGTAATTTCAT
*
15839492 AGGGG
253 AAGGG
** * * *
15839497 ATTATTTAGTAAATAATTATAAGA-CCAAGAGTATTTTCATAATTATGGTATGAGTGCATAATAT
1 ATTATTTAGTAAATAATTATAAGAGAAAAG-GTATTTTCATAATTATGGTATAAGGGCATAATAG
* * *** * *
15839561 TCAATTTGGACACATGTCAATTTCTTATCATATAATGGAGTGGGTATTTTAGTAATTTC-TCAAA
65 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTTCAT-AAG
* * * *
15839625 AGATTATTTAGCAAATAATTTTAAGAGAAAGGGTATTTTCATAATTATGGTTTGATGGCATAATA
129 AGATT-TTTAGTAAATAATTATAAGAGAAAGGGTATTTT-ATAATTATGGTATGAGGGCATAATA
* * * * * * * **
15839690 GCCCATTTGGCCATA-GCTCATTTTCTTATCATGTAACCT-TAAGGGTATTTTCATAATTTCATA
192 GTCCATTTGGCCACATG-TCAATTTCTTATCATATAA--TGGAAAGGCATTTTGGTAATTTCATA
**
15839753 AGCA
254 AGGG
* * * * ** * **
15839757 AATATTCAATAAATAATTATAAGAG-AAGGTGTATTTTTGTAATTATGGTATGAGGTAATAATAG
1 ATTATTTAGTAAATAATTATAAGAGAAAAG-GTATTTTCATAATTATGGTATAAGGGCATAATAG
* * * * * * * * * * *
15839821 TCGATTTTGTCACATATTAACTTCTTATCATA-AATGGGAAGGGTATTTTGGTTATTTAATAAGT
65 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTTCATAAGA
* * * * * ** *
15839885 GATTATTTAG-AAAGAGTTATAAGA-AAAGGGGTAGTTTCATAATTAT-GTATAAAGAAAGAATA
130 GATT-TTTAGTAAATAATTATAAGAGAAA-GGGTA-TTTTATAATTATGGTATGAGGGCATAATA
* * * * * *
15839947 GTCCAATTGGCCACATGTTAATTTCTTGTCATGTAATGGAAAAGGC-TTTTGGGAAATTCA-AAG
192 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG-AAAGGCATTTTGGTAATTTCATAA-
15840010 GGG
255 GGG
* * *
15840013 ATTATTTAGAAAAGAATTATAAGA-AAATGGGTATTTTC
1 ATTATTTAGTAAATAATTATAAGAGAAA-AGGTATTTTC
15840051 GTTAGTATGA
Statistics
Matches: 2440, Mismatches: 537, Indels: 289
0.75 0.16 0.09
Matches are distributed among these distances:
237 2 0.00
238 152 0.06
239 14 0.01
240 10 0.00
241 2 0.00
243 1 0.00
244 1 0.00
245 1 0.00
246 4 0.00
247 2 0.00
248 2 0.00
251 1 0.00
252 4 0.00
254 1 0.00
255 4 0.00
256 71 0.03
257 486 0.20
258 369 0.15
259 453 0.19
260 800 0.33
261 59 0.02
262 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (257 bp):
ATTATTTAGTAAATAATTATAAGAGAAAAGGTATTTTCATAATTATGGTATAAGGGCATAATAGT
CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTTCATAAGAG
ATTTTTAGTAAATAATTATAAGAGAAAGGGTATTTTATAATTATGGTATGAGGGCATAATAGTCC
ATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGCATTTTGGTAATTTCATAAGGG
Found at i:15837509 original size:22 final size:23
Alignment explanation
Indices: 15837477--15837521 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
15837467 TTATAAGTGA
15837477 AAGGGTATTTTCATAAAGTATAT
1 AAGGGTATTTTCATAAAGTATAT
* *
15837500 AAGGG-ATTTTTATAATGTATAT
1 AAGGGTATTTTCATAAAGTATAT
15837522 TATTAATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (23 bp):
AAGGGTATTTTCATAAAGTATAT
Found at i:15837578 original size:54 final size:53
Alignment explanation
Indices: 15837497--15837602 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
15837487 TCATAAAGTA
*
15837497 TATAAGGGATTTTTATAATGTATATTATTAATGAAAAAG-GTATTGTTGTAATTT
1 TATAAGGGATTTTTATAATATATATTATT-A-GAAAAAGTGTATTGTTGTAATTT
* *
15837551 TATAAGGGATTATTTAATAA-ATA-ATTATTAGAGAAAGTGTATTTTTGTAATT
1 TATAAGGGATT-TTT-ATAATATATATTATTAGAAAAAGTGTATTGTTGTAATT
15837603 GTCGTATGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
52 6 0.13
53 14 0.30
54 17 0.37
55 5 0.11
56 4 0.09
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (53 bp):
TATAAGGGATTTTTATAATATATATTATTAGAAAAAGTGTATTGTTGTAATTT
Found at i:15837689 original size:130 final size:129
Alignment explanation
Indices: 15837525--15840050 Score: 1593
Period size: 130 Copynumber: 19.6 Consensus size: 129
15837515 TGTATATTAT
* * * * * *
15837525 TAATGAAAAAGGTATTGTT-GTAATTTTATAAGGGATTATTTAATAAATAATTATTAGAGAAAGT
1 TAATGAGAAAGGCATT-TTGGTAA-TTTCTAAGGGATTATTTAGTAAATAATTATAAGAGAAAGG
** * * ** **
15837589 GTATTTTTGTAATTGTCGTATGAGGGCATAATAGTTTATTTATCCACATGTCAATTTCTTATCAT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
15837654 A
129 A
* * * * *
15837655 TAATGAGAAAGGCATTTTGGTAATTTTTTTAGGGAATATTTCA-TAAATAATTATAAAAGAATGG
1 TAATGAGAAAGGCATTTTGGTAA-TTTCTAAGGGATTATTT-AGTAAATAATTATAAGAGAAAGG
* * ** * ***
15837719 GTATTTTCGTAATTATGATACAAGGGCACAATAGTCCATTTGGCTGTATGTCAATTTCTTATCAT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
15837784 A
129 A
* * * * *
15837785 TAACTGA-AAGGGTATTTTTGTAATTTC-ATA--GACTATTTAGTAAATAATTATTAGAGAAAGG
1 TAA-TGAGAAAGGCATTTTGGTAATTTCTA-AGGGATTATTTAGTAAATAATTATAAGAGAAAGG
* * *** * * * *
15837846 GTATTTTCATAATTATTGTATGTGGATGTAATAGTTCATTTGGCCACAAGGCAATTTCTAATCAT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
15837911 A
129 A
* * **
15837912 TACT-AGAAAGGGTATTTTTATAATTTC-ATAGGGAATTATTTAGTAAATAATTATTAA-AGAAA
1 TAATGAGAAA-GGCATTTTGGTAATTTCTA-AGGG-ATTATTTAGTAAATAATTA-TAAGAGAAA
* * * ** * * * *
15837974 TGGTAATTT-AGTAACTATGGTACAACGGCATAATAGTCCATTTAGCTACATGGCAATTTCTTAT
62 GGGTATTTTCA-TAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTAT
15838038 CATA
126 CATA
* * * *
15838042 TAATG-GAAGGGGCATTTTGGTAATTTCATAGAGGG-TTATTTAGTCAATAATTATAAAAGAAGG
1 TAATGAGAA-AGGCATTTTGGTAATTTC-TA-AGGGATTATTTAGTAAATAATTATAAGAGAAAG
* * * * *
15838105 GGTATCTT-GTAATTATGATATGAGGGCATACTAGT-CATTTGGCCATATGTC-ATTTCTTATCA
63 GGTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCA
15838167 TA
128 TA
* ** * * * *
15838169 TAAT-AGAAAAGGCTTTTTAATAATTTCGTATGGGATTTTTTTAGTAAATAATTATAAGAAAAAT
1 TAATGAG-AAAGGCATTTTGGTAATTTC-TAAGGGA-TTATTTAGTAAATAATTATAAGAGAAAG
* * * * * *
15838233 GGTATTTTCATTATTATAGTATGAAGGCATAATTGTCCTTTTGGCCACATGTCAATCTCTTATCA
63 GGTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCA
15838298 TA
128 TA
* ** ** * *
15838300 TAATGA-AAATGGCATTTTGGTAATTTCACAAGCAATTATTTAAAAAATAATTATAAGATAAGGG
1 TAATGAGAAA-GGCATTTTGGTAATTTC-TAAGGGATTATTTAGTAAATAATTATAAGAGAAAGG
* * ** * * * * *
15838364 GTTTTTTTATAATTATTATATGGGGGCATATTAGTCAATGTGGTCACATGTCAATTTCTTATCAT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
15838429 A
129 A
* * * *
15838430 TAGTG-GAAA--CATTTTGGTAAATTCATAAGGGATTATTTAGTAAATAAATATGAGAGAATA-G
1 TAATGAGAAAGGCATTTTGGTAATTTC-TAAGGGATTATTTAGTAAATAATTATAAGAGAA-AGG
* * * * * * * * **
15838491 GTATTTTTATAATTATGATTTTAGGGCATAATGGTCAATTTGGCAACATGTCATTTTCTTATTGT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
*
15838556 T
129 A
* ** * * * * * * *
15838557 TAATG-GAGAGGGCATTTTTCTAATTTTTAAGGAGATTATTTA-AAAATTAATTGTAGGTGTAGG
1 TAATGAGA-AAGGCATTTTGGTAATTTCTAAGG-GATTATTTAGTAAA-TAATTATAAGAGAAAG
* * ** *
15838620 GGTATTTT-AGTAATTATGGTATGAAGACATAATAGTCCATTTGGCCAGGTGCCAATTTCTTATC
63 GGTATTTTCA-TAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATC
15838684 ATA
127 ATA
*** * *
15838687 -ACAT-AGAAAATTTATTTTAGTAATTTCTCAAGTGATTATTTAGTAAATAATTATATA-AG-AA
1 TA-ATGAG-AAAGGCATTTTGGTAATTTCT-AAGGGATTATTTAGTAAATAATTATA-AGAGAAA
* * ** * * *
15838748 GAGGTATTTTTGA-AATTATGGTATGAGGGCATAATAATTGATTTGGCTATATGTCAATTTCTAA
62 G-GGTA-TTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTA
15838812 TCATA
125 TCATA
* * * * *
15838817 TAAT-TGAAAGAGTATTTTTGTAATTTC-ATAGGTAATTATTTAGTAAATAATTATTAGAGAAAG
1 TAATGAGAAAG-GCATTTTGGTAATTTCTA-AGG-GATTATTTAGTAAATAATTATAAGAGAAAG
** * * * * *
15838880 GGTATTTTTGTAATTATGGTACGATGGCATAATAGTCCATTTCGCTAAATGTCAATTTCTTATCA
63 GGTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCA
*
15838945 TG
128 TA
* * * *
15838947 CAATG-GAAAAGGCATTTTAGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAATAG-AAGG
1 TAATGAG-AAAGGCATTTTGGTAA-TTTCTAAGGGATTATTTAGTAAATAATTATAAGAGAAAGG
* *** * * * *** **** *
15839010 GCATTTTTGCAGTTATGATATAAGGGTGCAATAGTCCA-TTCATTACATGTCAATTTCTTATTAT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
15839074 A
129 A
* * *
15839075 TAATG-GAAATGGGTAATTTGGTAATTTC-ATAGGAGATTATTTTGTAAATAATTATAAGAG-AA
1 TAATGAGAAA--GGCATTTTGGTAATTTCTA-AGG-GATTATTTAGTAAATAATTATAAGAGAAA
* * * ** ** * *
15839137 GGGATATTTTCATAATTGTTGTATAACAGCATAATAGTCCATTTCACCACTTGTCAACTTCTTAT
62 GGG-TATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTAT
15839202 CATA
126 CATA
* * ** * * * *
15839206 TAATG-GAAAAGGTATTTTGGTAATTTAATAAAAGATTATTTAAT-TATAAATA-AATGAGAAAA
1 TAATGAG-AAAGGCATTTTGGTAATTT-CTAAGGGATTATTTAGTAAATAATTATAA-GAGAAAG
* * ** * *
15839268 GGTGTTTTCATAATTATGGTATG-GGGAATAATAGTCCATTTAACTACAAGTCAATTTCTTATCA
63 GGTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCA
*
15839332 TG
128 TA
* * * * * *
15839334 TAATGTA-AAAGGTATTTTGTTAAATTTATAAGAGATTTTTTAGTAAATAATTACAAGAG-AAGA
1 TAATG-AGAAAGGCATTTTGGT-AATTTCTAAGGGATTATTTAGTAAATAATTATAAGAGAAAG-
** * ** ** * * * *
15839397 GGTATTTTCATAATTATAATACGATAGTGTAATAGT-AAGTTTGGCCAAATCT-AATTTGC-TAA
63 GGTATTTTCATAATTATGGTATGAGGGCATAATAGTCCA-TTTGGCCACATGTCAATTT-CTTAT
15839459 CATA
126 CATA
* * ** *
15839463 TAATG-GAAACGGCATTTTGGCAATTTCTTAGGGGATTATTTAGTAAATAATTATAAGACCAAGA
1 TAATGAGAAA-GGCATTTTGGTAATTTC-TAAGGGATTATTTAGTAAATAATTATAAGAGAAAGG
* * * *
15839527 GTATTTTCATAATTATGGTATGAGTGCATAATATTCAATTTGGACACATGTCAATTTCTTATCAT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
15839592 A
129 A
** * * ** * *
15839593 TAATG-GAGTGGGTATTTTAGTAATTTCTCAAAAGATTATTTAGCAAATAATTTTAAGAGAAAGG
1 TAATGAGA-AAGGCATTTTGGTAATTTCT-AAGGGATTATTTAGTAAATAATTATAAGAGAAAGG
* * * * *
15839657 GTATTTTCATAATTATGGTTTGATGGCATAATAGCCCATTTGGCCATA-GCTCATTTTCTTATCA
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATG-TCAATTTCTTATCA
*
15839721 TG
128 TA
**** * * ** ** * * *
15839723 TAACCTTAAGGGTATTTTCATAATTTCATAAGCAAATATTCAATAAATAATTATAAGAG-AAGGT
1 TAATGAGAAAGGCATTTTGGTAATTTC-TAAGGGATTATTTAGTAAATAATTATAAGAGAAAGG-
** ** * * * * * *
15839787 GTATTTTTGTAATTATGGTATGAGGTAATAATAGTCGATTTTGTCACATATTAACTTCTTATCAT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
15839852 A
129 A
* * * * * * * *
15839853 -AATGGGAAGGGTATTTTGGTTATTTAATAAGTGATTATTTAG-AAAGAGTTATAAGA-AAAGGG
1 TAATGAGAAAGGCATTTTGGTAATTT-CTAAGGGATTATTTAGTAAATAATTATAAGAGAAA-GG
* * * ** * * * *
15839915 GTAGTTTCATAATTAT-GTATAAAGAAAGAATAGTCCAATTGGCCACATGTTAATTTCTTGTCAT
64 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT
*
15839979 G
129 A
* * * * *
15839980 TAATG-GAAAAGGC-TTTTGGGAAATTCAAAGGGGATTATTTAGAAAAGAATTATAAGA-AAATG
1 TAATGAG-AAAGGCATTTTGGTAATTTCTAA-GGGATTATTTAGTAAATAATTATAAGAGAAA-G
15840042 GGTATTTTC
63 GGTATTTTC
15840051 GTTAGTATGA
Statistics
Matches: 1853, Mismatches: 447, Indels: 194
0.74 0.18 0.08
Matches are distributed among these distances:
125 1 0.00
126 9 0.00
127 290 0.16
128 216 0.12
129 327 0.18
130 903 0.49
131 95 0.05
132 12 0.01
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.39
Consensus pattern (129 bp):
TAATGAGAAAGGCATTTTGGTAATTTCTAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGT
ATTTTCATAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATA
Found at i:15838033 original size:257 final size:254
Alignment explanation
Indices: 15837558--15840084 Score: 1401
Period size: 257 Copynumber: 9.8 Consensus size: 254
15837548 TTTTATAAGG
* * * * * *
15837558 GATTATTTAATAAATAATTATTAGAGAAAGTGTATTTTTGTAATTGTCGTATGAGGGCATAATAG
1 GATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTTATAATTATTGTATGAGGACATAATAG
* ** ** ** *
15837623 TTTATTTATCCACATGTCAATTTCTTATCATATAATGAGAAAGGCATTTTGGTAATTTTTTTAGG
66 TTCATTTGGCCACATGTCAATTTCTTATCATATAAT-AGAAAGGCATTTTTATAATTTCATAAGG
* * * *
15837688 GAATATTTCA-TAAATAATTATAAAAGAATGGGTATTTTCGTAATTATGATACAAGGGCACAATA
130 GATTATTT-AGTAAATAATTAT-AAAGAAT-GGTATTTTAGTAATTATGATATAAGGGCATAATA
** * *
15837752 GTCCATTTGGCTGTATGTCAATTTCTTATCATATAACT-GAAAGGGTATTTTTGTAATTTCATA
192 GTCCATTTGGCTACATGTCAATTTCTTATCATATAA-TGGAAAGGGCATTTTGGTAATTTCATA
* * * **
15837815 GACTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTCATAATTATTGTATGTGGATGTAATAG
1 GATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTTATAATTATTGTATGAGGACATAATAG
* * * * *
15837880 TTCATTTGGCCACAAGGCAATTTCTAATCATATACTAGAAAGGGTATTTTTATAATTTCAT-AGG
66 TTCATTTGGCCACATGTCAATTTCTTATCATATAATAGAAA-GGCATTTTTATAATTTCATAAGG
* * * * *
15837944 GAATTATTTAGTAAATAATTATTAAAGAAATGGTAATTTAGTAACTATGGTACAACGGCATAATA
130 G-ATTATTTAGTAAATAATTA-TAAAG-AATGGTATTTTAGTAATTATGATATAAGGGCATAATA
* * *
15838009 GTCCATTTAGCTACATGGCAATTTCTTATCATATAATGGAAGGGGCATTTTGGTAATTTCATA
192 GTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAATTTCATA
* * * * * * *
15838072 GAGGGTTATTTAGTCAATAATTATAAAAGAAGGGGTA-TCTTGTAATTA-TGATATGAGGGCATA
1 GA---TTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTTATAATTATTG-TATGAGGACATA
* * *
15838135 CTAG-TCATTTGGCCATATGTC-ATTTCTTATCATATAATAGAAAAGGC-TTTTTAATAATTTCG
62 ATAGTTCATTTGGCCACATGTCAATTTCTTATCATATAATAG-AAAGGCATTTTT-ATAATTTCA
* * * *
15838197 TATGGGATTTTTTTAGTAAATAATTATAAGAAAAATGGTATTTTCA-TTATTAT-AGTATGAA-G
125 TAAGGGA-TTATTTAGTAAATAATTAT-A-AAGAATGGTATTTT-AGTAATTATGA-TAT-AAGG
* * * * * *
15838259 GCATAATTGTCCTTTTGGCCACATGTCAATCTCTTATCATATAATGAAAATGGCATTTTGGTAAT
184 GCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAAT
*
15838324 TTCACAA
249 TTCA-TA
** * * * * * * * *
15838331 GCAATTATTTAAAAAATAATTATAAGATAAGGGGTTTTTTTATAATTATTATATGGGGGCATATT
1 G--ATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTTATAATTATTGTATGAGGACATAAT
* * * * ** *
15838396 AG-TCAATGTGGTCACATGTCAATTTCTTATCATATAGTGGAAA--CATTTTGGTAAATTCATAA
64 AGTTC-ATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGCATTTTTATAATTTCATAA
* * * *
15838458 GGGATTATTTAGTAAATAAATATGAGAGAATAGGTATTTTTA-TAATTATGATTTTAGGGCATAA
128 GGGATTATTTAGTAAATAATTAT-AAAGAAT-GGTA-TTTTAGTAATTATGATATAAGGGCATAA
* * * * ** * * ** *
15838522 TGGTCAATTTGGCAACATGTCATTTTCTTATTGTTTAATGGAGAGGGCATTTTTCTAATTTTTAA
190 TAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAA--TTTCA
*
15838587 GGA
253 -TA
* * * * * * *
15838590 GATTATTTA-AAAATTAATT-GTAGGTGTAGGGGTA-TTTTAGTAATTATGGTATGAAGACATAA
1 GATTATTTAGTAAA-TAATTATTA-GAGAAAGGGTATTTTTA-TAATTATTGTATGAGGACATAA
* ** * ***
15838652 TAGTCCATTTGGCCAGGTGCCAATTTCTTATCATA-ACATAGAAA-ATTTATTTTAGTAATTTC-
63 TAGTTCATTTGGCCACATGTCAATTTCTTATCATATA-ATAGAAAGGCAT-TTTTA-TAATTTCA
* * * * * *
15838714 TCAAGTGATTATTTAGTAAATAATTATATAAGAAGAGGTATTTTTGAAATTATGGTATGAGGGCA
125 T-AAGGGATTATTTAGTAAATAATTATA-AAGAA-TGGTATTTTAGTAATTATGATATAAGGGCA
* ** * * * * * *
15838779 TAATAATTGATTTGGCTATATGTCAATTTCTAATCATATAATTGAAAGAGTATTTTTGTAATTTC
187 TAATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAATTTC
15838844 ATA
252 ATA
* * *
15838847 GGTAATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTTGTAATTATGGTACGATGG-CATA
1 -G--ATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTTATAATTATTGTATGA-GGACATA
* * * * ** * **
15838911 ATAGTCCATTTCGCTAAATGTCAATTTCTTATCATGCAATGGAAAAGGCA-TTTTAGTAATTTTT
62 ATAGTTCATTTGGCCACATGTCAATTTCTTATCATATAATAG-AAAGGCATTTTTA-TAATTTCA
* * * * * ***
15838975 TAAGGGATTATTTAGTAAATAATTATAATAGAAGGGCATTTTTGCAGTTATGATATAAGGGTGCA
125 TAAGGGATTATTTAGTAAATAATTATAA-AGAATGGTATTTTAGTAATTATGATATAAGGGCATA
*** * * *
15839040 ATAGTCCA-TTCATTACATGTCAATTTCTTATTATATAATGGAAATGGGTAATTTGGTAATTTCA
189 ATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAA-GGGCATTTTGGTAATTTCA
15839104 TAGGA
253 T---A
* * * * **
15839109 GATTATTTTGTAAATAATTATAAGAG-AAGGGATATTTTCATAATTGTTGTAT-AACAGCATAAT
1 GATTATTTAGTAAATAATTATTAGAGAAAGGG-TATTTTTATAATTATTGTATGAGGA-CATAAT
* ** * * * * ** *
15839172 AGTCCATTTCACCACTTGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTTAATAA
64 AGTTCATTTGGCCACATGTCAATTTCTTATCATATAATAG-AAAGGCATTTTTATAATTTCATAA
** * * * * * * * *
15839237 AAGATTATTTAAT-TATAAATA-AATGAGAAAAGGTGTTTTCA-TAATTATGGTAT-GGGGAATA
128 GGGATTATTTAGTAAATAATTATAA--AG-AATGGTATTTT-AGTAATTATGATATAAGGGCATA
** * * * * * *
15839298 ATAGTCCATTTAACTACAAGTCAATTTCTTATCATGTAATGTAAAAGGTATTTTGTTAAATTT-A
189 ATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGGT-AATTTCA
15839362 TAAGA
253 T---A
* ** * ** * * **
15839367 GATTTTTTAGTAAATAATTACAAGAG-AAGAGGTATTTTCATAATTATAATACGA-TAGTGTAAT
1 GATTATTTAGTAAATAATTATTAGAGAAAG-GGTATTTTTATAATTATTGTATGAGGA-CATAAT
* * * * * *** *
15839430 AG-TAAGTTTGGCCAAATCT-AATTTGC-TAACATATAATGGAAACGGCATTTTGGCAATTTCTT
64 AGTTCA-TTTGGCCACATGTCAATTT-CTTATCATATAATAGAAA-GGCATTTTTATAATTTCAT
* * * * *
15839492 AGGGGATTATTTAGTAAATAATTAT-AAGACCAAGAGTATTTTCA-TAATTATGGTATGAGTGCA
126 AAGGGATTATTTAGTAAATAATTATAAAGA--ATG-GTATTTT-AGTAATTATGATATAAGGGCA
* * ** * *
15839555 TAATATTCAATTTGGAC-ACATGTCAATTTCTTATCATATAATGGAGTGGGTATTTTAGTAATTT
187 TAATAGTCCATTTGG-CTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAA-TT
*
15839619 CTCAAAA
250 -TC-ATA
* * * *
15839626 GATTATTTAGCAAATAATT-TTAAGAGAAAGGGTATTTTCATAATTATGGTTTGATGG-CATAAT
1 GATTATTTAGTAAATAATTATT-AGAGAAAGGGTATTTTTATAATTATTGTATGA-GGACATAAT
** * * * * * * *
15839689 AGCCCATTTGGCCATA-GCTCATTTTCTTATCATGTAACCT-TAAGGGTATTTTCATAATTTCAT
64 AGTTCATTTGGCCACATG-TCAATTTCTTATCATATAA--TAGAAAGGCATTTTTATAATTTCAT
** * * * * * * * **
15839752 AAGCAAATATTCAATAAATAATTATAAGAGAAGGTGTATTTTTGTAATTATGGTATGAGGTAATA
126 AAGGGATTATTTAGTAAATAATTATAA-AGAATG-GTATTTTAGTAATTATGATATAAGGGCATA
* * * * * * * * *
15839817 ATAGTCGATTTTG-TCACATATTAACTTCTTATCATA-AATGGGAAGGGTATTTTGGTTATTTAA
189 ATAGTCCATTTGGCT-ACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAATTTCA
15839880 TAA
253 T-A
* * * * * * * * *
15839883 GTGATTATTTAG-AAAGAGTTATAAGA-AAAGGGGTAGTTTCATAATTA-TGTATAAAGAAAGAA
1 --GATTATTTAGTAAATAATTATTAGAGAAA-GGGTATTTTTATAATTATTGTATGAGGACATAA
* * * * * * *** *
15839945 TAGTCCAATTGGCCACATGTTAATTTCTTGTCATGTAATGGAAAAGGC-TTTTGGGAAATTCA-A
63 TAGTTCATTTGGCCACATGTCAATTTCTTATCATATAATAG-AAAGGCATTTTTATAATTTCATA
* * * * * * * **
15840008 AGGGGATTATTTAGAAAAGAATTATAAGAAAATGGGTATTTTCGTTAGTATGACATAAATGCATA
127 A-GGGATTATTTAGTAAATAATTATAA-AGAAT-GGTATTTTAGTAATTATGATATAAGGGCATA
*
15840073 ATAGTACATTTG
189 ATAGTCCATTTG
15840085 TACATATGTC
Statistics
Matches: 1754, Mismatches: 404, Indels: 225
0.74 0.17 0.09
Matches are distributed among these distances:
255 4 0.00
256 100 0.06
257 477 0.27
258 358 0.20
259 411 0.23
260 361 0.21
261 37 0.02
262 6 0.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.39
Consensus pattern (254 bp):
GATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTTATAATTATTGTATGAGGACATAATAG
TTCATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGCATTTTTATAATTTCATAAGGG
ATTATTTAGTAAATAATTATAAAGAATGGTATTTTAGTAATTATGATATAAGGGCATAATAGTCC
ATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAATTTCATA
Found at i:15839060 original size:645 final size:636
Alignment explanation
Indices: 15837532--15839597 Score: 1548
Period size: 645 Copynumber: 3.2 Consensus size: 636
15837522 TATTAATGAA
* * * * *
15837532 AAAG-GTATTGTTGTAATTTTATAAGGGATTATTTAATAAATAATTATTAGAGAAAGTGTATTTT
1 AAAGAGTATTTTTGTAATTTCAT-AGGAATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTT
* * * ** *
15837596 TGTAATTGTCGTATGAGGGCATAATAGTTTATTTATCCACATGTCAATTTCTTATCATATAATGA
65 TGTAATTATAGTATGAAGGCATAATAGTCCATTTAGCCACATGTCAATTTCTTATCATATAATGA
* *
15837661 GAAAGGCATTTTGGTAATTTTTTTAGGGAATATTTCATAAATAATTATAAAAGAATGGGTATTTT
130 -AAAGGCATTTTGGTAATTTTTTAAGGGATTATTT-ATAAATAATTATAAAAGAA-GGG-ATTTT
* * * * **
15837726 CGTAATTATGATACAAGGGCACAATAGTCCATTTGGCTGTATGTCAATTTCTTATCATATAACT-
191 TGT-ATTATGATATAAGGGCGCAATAGTCCA-TTGGTTACATGTCAATTTCTTATCATATAA-TG
* * *
15837790 GAAAGGGTATTTTTGTAATTTCATA--GACTATTTAGTAAATAATTATTAGAGAAAGGGTATTTT
253 GAAA--GTATTTTGGTAATTTCATAGGGATTATTTAGTAAATAATTATAAGAGAAA-GGTATTTT
** * * *
15837853 CATAATTATTGTATGTGGATGTAATAGTTCATTTGGCCACAAGGCAATTTCTAATCATATACTAG
315 CATAATTATTGTATGTGGACATAATAGGTCATTTGGCAACAAGGCAATTTCTAATCATATAATAG
* * * * *
15837918 AAAGGGTATTTTTATAATTTCATAGGGAATTATTTAGTAAATAATTATTAAAGAAATGGTAATTT
380 AAAGGGCATTTTTATAATTTCATAAGGAATTATTTAGAAAATAATTAGTAAAGAAAGGGTAATTT
* * * *
15837983 AGTAACTATGGTACAACGGCATAATAGTCCATTTAGCTACATGGCAATTTCTTATCATATAATGG
445 AGTAACTATGGTACAACGACATAATAGTCCATTTAGCCACATGCCAATTTCTTATCATATAATAG
** * * * *
15838048 AAGGGGCATTTTGGTAATTTCATAGAGGGTTATTTAGTCAATAATTATAAAAGAAGGGGTATCTT
510 AAAAGGCATTTTAGTAATTTCATAGAGGATTATTTAGTAAATAATTATAAAAGAAGAGGTATCTT
* * *
15838113 GTAATTATGATATGAGGGCATACTAGTCATTTGGCCATATGTCATTTCTTATCATATAATAG
575 GAAATTATGATATGAGGGCATAATAGTCATTTGGCCATATGTCATTTCTAATCATATAATAG
** * * * * * * *
15838175 AAA-AGGCTTTTTAATAATTTCGTATGGGATTTTTTTAGTAAATAATTATAAGAAAAATGGTATT
1 AAAGAGTATTTTT-GTAATTTC--ATAGGAATTATTTAGTAAATAATTATTAGAGAAAGGGTATT
** * * * * *
15838239 TTCATTATTATAGTATGAAGGCATAATTGTCCTTTTGGCCACATGTCAATCTCTTATCATATAAT
63 TTTGTAATTATAGTATGAAGGCATAATAGTCCATTTAGCCACATGTCAATTTCTTATCATATAAT
*** ** * * * *
15838304 GAAAATGGCATTTTGGTAATTTCACAAGCAATTATTTAAAAAATAATTATAAGATAAGGGGTTTT
128 GAAAA-GGCATTTTGGTAATTTTTTAAGGGATTATTT-ATAAATAATTATAAAAGAAGGGATTTT
* * * * * * * *
15838369 TTTATAATTATTATATGGGGGCATATTAGTCAATGTGGTCACATGTCAATTTCTTATCATATAGT
191 TGTATTATGA-TATAAGGGCGCA-A-TAGTCCAT-TGGTTACATGTCAATTTCTTATCATATAAT
* * * *
15838434 GGAAA-CATTTTGGTAAATTCATAAGGGATTATTTAGTAAATAAATATGAGAGAATAGGTATTTT
252 GGAAAGTATTTTGGTAATTTCAT-AGGGATTATTTAGTAAATAATTATAAGAGAA-AGGTATTTT
* * * * * * * ** *
15838498 TATAATTA-TG-ATTTTAGGGCATAAT-GGTCAATTTGGCAACATGTCATTTTCTTATTGTTTAA
315 CATAATTATTGTA-TGT-GGACATAATAGGTC-ATTTGGCAACAAGGCAATTTCTAATCATATAA
* * * * ** * *
15838560 TGGAGAGGGCATTTTTCTAATTT-TTAAGGAGATTATTTA-AAAATTAATT-GTAGGTGTAGGGG
377 TAGAAAGGGCATTTTTATAATTTCATAAGGA-ATTATTTAGAAAA-TAATTAGTA-AAGAAAGGG
* * * * **
15838622 TATTTTAGTAATTATGGTATGAA-GACATAATAGTCCATTTGGCCAGGTGCCAATTTCTTATCAT
439 TAATTTAGTAACTATGGTA-CAACGACATAATAGTCCATTTAGCCACATGCCAATTTCTTATCAT
*** *
15838686 A-ACATAGAAAATTTATTTTAGTAATTTC-TCA-AGTGATTATTTAGTAAATAATTATATAAGAA
503 ATA-ATAGAAAAGGCATTTTAGTAATTTCAT-AGAG-GATTATTTAGTAAATAATTATAAAAGAA
* * * * *
15838748 GAGGTATTTTTGAAATTATGGTATGAGGGCATAATAATTGATTTGGCTATATGTCAATTTCTAAT
565 GAGGTA-TCTTGAAATTATGATATGAGGGCATAAT-AGTCATTTGGCCATATGTC-ATTTCTAAT
*
15838813 CATATAATTG
627 CATATAATAG
15838823 AAAGAGTATTTTTGTAATTTCATAGGTAATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTT
1 AAAGAGTATTTTTGTAATTTCATAGG-AATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTT
* * * * * * **
15838888 TGTAATTATGGTACGATGGCATAATAGTCCATTTCGCTAAATGTCAATTTCTTATCATGCAATGG
65 TGTAATTATAGTATGAAGGCATAATAGTCCATTTAGCCACATGTCAATTTCTTATCATATAAT-G
* *
15838953 AAAAGGCATTTTAGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAATAGAAGGGCATTTTT
129 AAAAGGCATTTTGGTAATTTTTTAAGGGATTATTTA-TAAATAATTATAAAAGAAGGG-ATTTTT
* * ** *
15839018 GCAGTTATGATATAAGGGTGCAATAGTCCATTCATTACATGTCAATTTCTTATTATATAATGGAA
192 GTA-TTATGATATAAGGGCGCAATAGTCCATTGGTTACATGTCAATTTCTTATCATATAATGGAA
* * *
15839083 ATGGGTAATTTGGTAATTTCATAGGAGATTATTTTGTAAATAATTATAAGAGAAGGGATATTTTC
256 A---GTATTTTGGTAATTTCATAGG-GATTATTTAGTAAATAATTATAAGAGAAAGG-TATTTTC
* *** ** * ** * * * *
15839148 ATAATTGTTGTAT-AACAGCATAATA-GTCCATTTCACCACTTGTCAACTTCTTATCATATAATG
316 ATAATTATTGTATGTGGA-CATAATAGGT-CATTTGGCAACAAGGCAATTTCTAATCATATAATA
* * ** * * ** * * *
15839211 GAAAAGGTATTTTGGTAATTTAATAA-AAGATTATTTA-ATTATAAATA--AATGAGAAAAGGTG
379 GAAAGGGCATTTTTATAATTTCATAAGGA-ATTATTTAGAAAATAATTAGTAA--AGAAAGGGTA
* * **** * * * * *
15839272 TTTTCA-TAATTATGGTATGGGGA-ATAATAGTCCATTTAACTACAAGTCAATTTCTTATCATGT
441 ATTT-AGTAACTATGGTACAACGACATAATAGTCCATTTAGCCACATGCCAATTTCTTATCATAT
* * * *
15839335 AAT-GTAAAAGGTATTTT-GTTAAATTT-ATA-AGAGATTTTTTAGTAAATAATTACAAGAGAAG
505 AATAG-AAAAGGCATTTTAG-T-AATTTCATAGAG-GATTATTTAGTAAATAATTATAAAAGAAG
* * * * ** ** * * * *
15839396 AGGTATTTTCATAATTATAATACGATAGTGTAATAGTAAGTTTGGCCAAATCTAATTTGCTAA-C
566 AGGTATCTTGA-AATTATGATATGAGGGCATAATAGTCA-TTTGGCCATATGTCATTT-CTAATC
*
15839460 ATATAATGG
628 ATATAATAG
* * * * * * ** *
15839469 AAACG-GCATTTTGGCAATTTCTTAGGGGATTATTTAGTAAATAATTATAAGACCAAGAGTATTT
1 AAA-GAGTATTTTTGTAATTTCATA-GGAATTATTTAGTAAATAATTATTAGAGAAAGGGTATTT
** * * * * *
15839533 TCATAATTATGGTATG-AGTGCATAATATTCAATTTGGACACATGTCAATTTCTTATCATATAAT
64 TTGTAATTATAGTATGAAG-GCATAATAGTCCATTTAGCCACATGTCAATTTCTTATCATATAAT
15839597 G
128 G
15839598 GAGTGGGTAT
Statistics
Matches: 1109, Mismatches: 253, Indels: 120
0.75 0.17 0.08
Matches are distributed among these distances:
642 19 0.02
643 23 0.02
644 36 0.03
645 397 0.36
646 164 0.15
647 252 0.23
648 86 0.08
649 124 0.11
650 7 0.01
651 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.39
Consensus pattern (636 bp):
AAAGAGTATTTTTGTAATTTCATAGGAATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTT
GTAATTATAGTATGAAGGCATAATAGTCCATTTAGCCACATGTCAATTTCTTATCATATAATGAA
AAGGCATTTTGGTAATTTTTTAAGGGATTATTTATAAATAATTATAAAAGAAGGGATTTTTGTAT
TATGATATAAGGGCGCAATAGTCCATTGGTTACATGTCAATTTCTTATCATATAATGGAAAGTAT
TTTGGTAATTTCATAGGGATTATTTAGTAAATAATTATAAGAGAAAGGTATTTTCATAATTATTG
TATGTGGACATAATAGGTCATTTGGCAACAAGGCAATTTCTAATCATATAATAGAAAGGGCATTT
TTATAATTTCATAAGGAATTATTTAGAAAATAATTAGTAAAGAAAGGGTAATTTAGTAACTATGG
TACAACGACATAATAGTCCATTTAGCCACATGCCAATTTCTTATCATATAATAGAAAAGGCATTT
TAGTAATTTCATAGAGGATTATTTAGTAAATAATTATAAAAGAAGAGGTATCTTGAAATTATGAT
ATGAGGGCATAATAGTCATTTGGCCATATGTCATTTCTAATCATATAATAG
Found at i:15840554 original size:129 final size:127
Alignment explanation
Indices: 15840183--15840879 Score: 744
Period size: 130 Copynumber: 5.4 Consensus size: 127
15840173 GATATTTTCA
* * * *
15840183 TAATTTCAAATGA-GATTATTTAGTAAATAATTATTAGAAAAAGAG-TATTTTCATAATTATGGT
1 TAATTTCATA-GAGGATTATTTAGTAAATAA-TATAAGAGAAAG-GCTATTTTTATAATTAT-GT
* * * * * *
15840246 -TCGAGGGCAAAATAGTCCATTTGGCAACATGTAAATTACTTACCATATAATGGGAAAGGCATTT
62 AT-GAGGGCACAATAGTCCATTTGGCCACATGTCAATT-TTTATCATATAATGGAAAAGGCATTT
15840310 TGG
125 TGG
* * * * *
15840313 TAATTTTC-TAGGGGATTATTTAGTAAATAATGATAAGAGAAGGGCTCTTTTTGTAACTATGATA
1 TAA-TTTCATAGAGGATTATTTAGTAAATAAT-ATAAGAGAAAGGCTATTTTTATAATTATG-TA
* * *
15840377 TGAGTGCACAATAGTCCATTTGGCTATATGTCAATTTCTTATCATATAATGGAAAAGGCATTTTG
63 TGAGGGCACAATAGTCCATTTGGCCACATGTCAATTT-TTATCATATAATGGAAAAGGCATTTTG
15840442 G
127 G
* *
15840443 TAATTTCATAATAGG-TTATTTAGTAAATAATATAAGAGAAAGGTTATTTTTATAATTATAGTAT
1 TAATTTCAT-AGAGGATTATTTAGTAAATAATATAAGAGAAAGGCTATTTTTATAATTAT-GTAT
* ** * * *
15840507 GAGGGCATAATAGTTAATTTGGCCACATGTAAATTATTTACCATATAATGGGAAAGGCATTTTGG
64 GAGGGCACAATAGTCCATTTGGCCACATGTCAATT-TTTATCATATAATGGAAAAGGCATTTTGG
* * * * *
15840572 TAATTTTC-TAGGGGATTATTTAGTAAATAATGATAAGAGAAGGGCTCTTTTTGTAACTATGATA
1 TAA-TTTCATAGAGGATTATTTAGTAAATAAT-ATAAGAGAAAGGCTATTTTTATAATTATG-TA
* *
15840636 TG-GGTGCACAATAGTCCATTTGGCTATATGTCAATTTCTTATCATATAATGGAAAAGGCATTTT
63 TGAGG-GCACAATAGTCCATTTGGCCACATGTCAATTT-TTATCATATAATGGAAAAGGCATTTT
15840700 GG
126 GG
* * *
15840702 TAATTTCATAAAAGG-TTATTTAGTAAATAATATGAGAGAAAGGTTATTTTTATAATTATAGTAT
1 TAATTTCAT-AGAGGATTATTTAGTAAATAATATAAGAGAAAGGCTATTTTTATAATTAT-GTAT
* * ** *
15840766 GAGGGCATAACAGTTAATTTGGCCACATGTCAATTTTTATCATATAATGAAAAAGGCATTTTGG
64 GAGGGCACAATAGTCCATTTGGCCACATGTCAATTTTTATCATATAATGGAAAAGGCATTTTGG
* * * *
15840830 TAATTTTATAGGGGATTATTTAGTAAATAATTATAAGAGAATGGGTATTT
1 TAATTTCATAGAGGATTATTTAGTAAATAA-TATAAGAGAAAGGCTATTT
15840880 ACGTAATTGT
Statistics
Matches: 475, Mismatches: 69, Indels: 47
0.80 0.12 0.08
Matches are distributed among these distances:
127 3 0.01
128 53 0.11
129 184 0.39
130 224 0.47
131 11 0.02
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (127 bp):
TAATTTCATAGAGGATTATTTAGTAAATAATATAAGAGAAAGGCTATTTTTATAATTATGTATGA
GGGCACAATAGTCCATTTGGCCACATGTCAATTTTTATCATATAATGGAAAAGGCATTTTGG
Found at i:15840623 original size:259 final size:259
Alignment explanation
Indices: 15840183--15840870 Score: 1132
Period size: 259 Copynumber: 2.7 Consensus size: 259
15840173 GATATTTTCA
* * * * *
15840183 TAATTTCA-AATGAGATTATTTAGTAAATAATTATTAGAAAAAGAG-TATTTTCATAATTATGGT
1 TAATTTCATAAT-AGGTTATTTAGTAAATAA-TATAAGAGAAAG-GTTATTTTTATAATTATAGT
* ** * *
15840246 -TCGAGGGCAAAATAGTCCATTTGGCAACATGTAAATTACTTACCATATAATGGGAAAGGCATTT
63 AT-GAGGGCATAATAGTTAATTTGGCCACATGTAAATTATTTACCATATAATGGGAAAGGCATTT
15840310 TGGTAATTTTCTAGGGGATTATTTAGTAAATAATGATAAGAGAAGGGCTCTTTTTGTAACTATGA
127 TGGTAATTTTCTAGGGGATTATTTAGTAAATAATGATAAGAGAAGGGCTCTTTTTGTAACTATGA
15840375 TATGAGTGCACAATAGTCCATTTGGCTATATGTCAATTTCTTATCATATAATGGAAAAGGCATTT
192 TATGAGTGCACAATAGTCCATTTGGCTATATGTCAATTTCTTATCATATAATGGAAAAGGCATTT
15840440 TGG
257 TGG
15840443 TAATTTCATAATAGGTTATTTAGTAAATAATATAAGAGAAAGGTTATTTTTATAATTATAGTATG
1 TAATTTCATAATAGGTTATTTAGTAAATAATATAAGAGAAAGGTTATTTTTATAATTATAGTATG
15840508 AGGGCATAATAGTTAATTTGGCCACATGTAAATTATTTACCATATAATGGGAAAGGCATTTTGGT
66 AGGGCATAATAGTTAATTTGGCCACATGTAAATTATTTACCATATAATGGGAAAGGCATTTTGGT
15840573 AATTTTCTAGGGGATTATTTAGTAAATAATGATAAGAGAAGGGCTCTTTTTGTAACTATGATATG
131 AATTTTCTAGGGGATTATTTAGTAAATAATGATAAGAGAAGGGCTCTTTTTGTAACTATGATATG
*
15840638 GGTGCACAATAGTCCATTTGGCTATATGTCAATTTCTTATCATATAATGGAAAAGGCATTTTGG
196 AGTGCACAATAGTCCATTTGGCTATATGTCAATTTCTTATCATATAATGGAAAAGGCATTTTGG
* *
15840702 TAATTTCATAAAAGGTTATTTAGTAAATAATATGAGAGAAAGGTTATTTTTATAATTATAGTATG
1 TAATTTCATAATAGGTTATTTAGTAAATAATATAAGAGAAAGGTTATTTTTATAATTATAGTATG
* * * **
15840767 AGGGCATAACAGTTAATTTGGCCACATGTCAATT-TTTATCATATAATGAAAAAGGCATTTTGGT
66 AGGGCATAATAGTTAATTTGGCCACATGTAAATTATTTACCATATAATGGGAAAGGCATTTTGGT
* *
15840831 AATTTTATAGGGGATTATTTAGTAAATAATTATAAGAGAA
131 AATTTTCTAGGGGATTATTTAGTAAATAATGATAAGAGAA
15840871 TGGGTATTTA
Statistics
Matches: 405, Mismatches: 20, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
258 66 0.16
259 310 0.77
260 26 0.06
261 3 0.01
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (259 bp):
TAATTTCATAATAGGTTATTTAGTAAATAATATAAGAGAAAGGTTATTTTTATAATTATAGTATG
AGGGCATAATAGTTAATTTGGCCACATGTAAATTATTTACCATATAATGGGAAAGGCATTTTGGT
AATTTTCTAGGGGATTATTTAGTAAATAATGATAAGAGAAGGGCTCTTTTTGTAACTATGATATG
AGTGCACAATAGTCCATTTGGCTATATGTCAATTTCTTATCATATAATGGAAAAGGCATTTTGG
Found at i:15841250 original size:238 final size:235
Alignment explanation
Indices: 15840959--15841598 Score: 786
Period size: 238 Copynumber: 2.7 Consensus size: 235
15840949 TGGTATTATG
* * *
15840959 GTAAATAGTTACAAGAG-AAGGATTATTTTTGCAATTATGATATTAGTGCATAATGGTCAATTTA
1 GTAAATAGTTATAAGAGAAAGGGTT-TTTTTGTAATTATGATATTAGTGCATAATGGTCAATTTA
** * *
15841023 GTAACACATCAATTTCTTATCATATAATATAAAGGCCATTTTAATAATTTATTAAGTGATTATAT
65 GTAACATGTCAATTTCTTATCATATAATA-AAAGGCCATTTT-ATAATTT-TTAAGAGATTATTT
*
15841088 AAAAATTAATTATAAGCGAAGGGGTATTTTCGTAATGTATATAAGGGATTCTTTTAATGTATATT
127 AAAAATTAATTATAAGCGAAAGGGTATTTTCGTAATGTATATAAGGGATTCTTTTAATGTATATT
**
15841153 ATTAATGGAAAGGGTATTTTTGTAATTTCATAAGAGATTATTTA
192 ATTAATGGAAAGGGTATTTTCATAATTTCATAAGAGATTATTTA
*
15841197 GTAAATAGTTATAAGAGAAAGGGTTTTTTTGTAATTATGATATTAGGGCATAATGGTCAATTTAG
1 GTAAATAGTTATAAGAGAAAGGGTTTTTTTGTAATTATGATATTAGTGCATAATGGTCAATTTAG
* * * * *
15841262 CAACATGTCAATTTCTTATCATATAATGAAAAGGCCATATTTGTATTTTCTTAAAAGATTTTTTA
66 TAACATGTCAATTTCTTATCATATAAT-AAAAGGCCAT-TTTATAATTT-TTAAGAGATTATTTA
* * *
15841327 GAAATTAATTATAAGCGAAAAGGTATTTTCATAATGTATATAAGGGATTCTTTTAATGTATATTA
128 AAAATTAATTATAAGCGAAAGGGTATTTTCGTAATGTATATAAGGGATTCTTTTAATGTATATTA
*
15841392 TTAATGGAAAGGGTATTTTCATAATTTCATAAGGGATTATTTA
193 TTAATGGAAAGGGTATTTTCATAATTTCATAAGAGATTATTTA
* * * * * ** * * *
15841435 GTAAATAATTATTAA-AGAAAAGGTATGTTCGTAATTATGATACGAGTGCATAATAGTCCATTTG
1 GTAAATAGTTA-TAAGAGAAAGGGTTTTTTTGTAATTATGATATTAGTGCATAATGGTCAATTTA
* * * * *
15841499 GTTACATGTTAATTTCTTATCATATAAAAGGAAAGG-CATTTTGACAATTTTGT-AGGGATTATT
65 GTAACATGTCAATTTCTTATCATATAATA--AAAGGCCATTTT-ATAATTTT-TAAGAGATTATT
* * *
15841562 TAGTAAA-TAATTATAAGAGAAAGGGTATTTTTGTAAT
126 TA-AAAATTAATTATAAGCGAAAGGGTATTTTCGTAAT
15841599 TACTATATAA
Statistics
Matches: 346, Mismatches: 47, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
237 40 0.12
238 288 0.83
239 18 0.05
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40
Consensus pattern (235 bp):
GTAAATAGTTATAAGAGAAAGGGTTTTTTTGTAATTATGATATTAGTGCATAATGGTCAATTTAG
TAACATGTCAATTTCTTATCATATAATAAAAGGCCATTTTATAATTTTTAAGAGATTATTTAAAA
ATTAATTATAAGCGAAAGGGTATTTTCGTAATGTATATAAGGGATTCTTTTAATGTATATTATTA
ATGGAAAGGGTATTTTCATAATTTCATAAGAGATTATTTA
Found at i:15841446 original size:54 final size:55
Alignment explanation
Indices: 15841318--15841469 Score: 140
Period size: 54 Copynumber: 2.8 Consensus size: 55
15841308 TTTCTTAAAA
*
15841318 GATTTTTTAG-AAATTAATTA-TAAGCGAAAAGGTATTTTCATAATGTATATAAGG
1 GATTATTTAGTAAA-TAATTATTAAGCGAAAAGGTATTTTCATAATGTATATAAGG
* * *
15841372 GATTCTTT--TAATGTATATTATTAATG-GAAAGGGTATTTTCATAAT-T-TCATAAGG
1 GATTATTTAGTAA-ATA-ATTATTAA-GCGAAAAGGTATTTTCATAATGTAT-ATAAGG
* * *
15841426 GATTATTTAGTAAATAATTATTAA-AGAAAAGGTATGTTCGTAAT
1 GATTATTTAGTAAATAATTATTAAGCGAAAAGGTATTTTCATAAT
15841470 TATGATACGA
Statistics
Matches: 81, Mismatches: 8, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
53 21 0.26
54 33 0.41
55 23 0.28
56 4 0.05
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (55 bp):
GATTATTTAGTAAATAATTATTAAGCGAAAAGGTATTTTCATAATGTATATAAGG
Found at i:15841563 original size:129 final size:127
Alignment explanation
Indices: 15841393--15844752 Score: 1621
Period size: 130 Copynumber: 26.1 Consensus size: 127
15841383 TGTATATTAT
* * *
15841393 TAATGGAAAGGGTATTTTCATAATTTCATAAGGGATTATTTAGTAAATAATTATTAAAGAAAAGG
1 TAATGGAAA-GGCATTTTGATAATTTTAT-AGGGATTATTTAGTAAATAATTA-TAAAGAAAAGG
* * * * *
15841458 TATGTTCGTAATTATGATACGAGTGCATAATAGTCCATTTGGTTACATGTTAATTTCTTATCATA
63 TATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATA
* * * *
15841523 TAAAAGGAAAGGCATTTTGACAATTTTGTAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGT
1 T-AATGGAAAGGCATTTTGATAATTTTATAGGGATTATTTAGTAAATAATTATAA-AGAAAAGGT
* * * * *
15841588 ATTTTTGTAATTACT-ATATAAGGGCATTATAATCCATTTTGCTACATGTCAATTTCTTATCATA
64 ATTTTCGTAATTA-TGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATA
* * * *
15841652 TAATGGAAATGGCATTTTGGA-AATTTTTTAAAGGATTATTTAGTAAATAACTAT-AAGAGATAG
1 TAATGGAAA-GGCATTTT-GATAATTTTAT-AGGGATTATTTAGTAAATAATTATAAAGA-AAAG
* * * * * * *
15841715 GTAATTTCGTAGTTATGGTATAAGGGCATAAGAGTCCATTTGG-TCACATGTCAACTTCTAATCA
62 GTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCT-ACATGTCAATTTCTTATCA
15841779 TA
126 TA
* * * **
15841781 TATTGGAAAGGGCATTTCTG-TAATTTCATAGGGAATTATTTAGTAAATAATTATGAGAGAAGGG
1 TAATGGAAA-GGCATTT-TGATAATTTTATAGGG-ATTATTTAGTAAATAATTAT-AAAGAAAAG
* ** *
15841845 GTATTTTCGATAATTATGATATGAGGGCACAACT-GTTTATTTAGCTACATGTCAATTTCTTATC
62 GTATTTTCG-TAATTATGATATGAGGGCATAA-TAGTCCATTTGGCTACATGTCAATTTCTTATC
15841909 ATA
125 ATA
* * * *
15841912 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTGAGTAAATAATTATAAAAAAAAGGT
1 TAATGG-AAAGGCATTTTGATAATTTTAT-AGGGATTATTTAGTAAATAATTATAAAGAAAAGGT
* * ** * **
15841977 GCTTTT-GTAATTATGATATGAAGGCATAATAGTTTATTTAGCTACAACTCAATTT-TTATCATA
64 -ATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATA
* * * * * * *
15842040 TAATGGAAAAAGTATTTCGATAATTTCATAGCGGGTTATTTAGTAAATAATTGTAACAAAAAAGG
1 TAATGG-AAAGGCATTTTGATAATTTTATAG-GGATTATTTAGTAAATAATTATAA-AGAAAAGG
* * * *
15842105 TATTTTCGTAATTAAGA-ATGAGGGCATAATAGTTCATTTAGG-GACATGCCAATTTCTTATCAT
63 TATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTT-GGCTACATGTCAATTTCTTATCAT
15842168 A
127 A
* * ** * * **
15842169 TAATGAAAAGGGTATTTTCCTAATTTGAT-GGG-TGTAATTTAGTAAATAAATGT-TAGAGATGA
1 TAATGGAAA-GGCATTTTGATAATTTTATAGGGAT-T-ATTTAGTAAAT-AAT-TATAAAGAAAA
* * * * * * * * * * *
15842231 GTTATTTTTGTAGTTGTGGTAAGATGGCATAAAAGTCCATTTGGCCACATGACAATTTCTAATCA
61 GGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCA
15842296 TA
126 TA
* * * * *
15842298 TAATGGAAATGGTATTTTCATAATTTCATAGGAGATTATTTAG-AATATAAATATTAGAGAAAAG
1 TAATGGAAA-GGCATTTTGATAATTTTATAGG-GATTATTTAGTAA-ATAATTA-TAAAGAAAA-
* * * * * * * *
15842362 GGTATTTTCGTCATGATGGTACGAGGGCATCATAGTTCATTTGGCTACAAGTCAA-TTATTATCA
61 GGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCA
15842426 TA
126 TA
* * * *
15842428 TAATGGAAAAGGCATTTTTG-TACTTTTTTAAGGGATTATTTTGTAAATAATTAT-AAGAGAATG
1 TAATGG-AAAGGCA-TTTTGATAATTTTAT-AGGGATTATTTAGTAAATAATTATAAAGA-AAAG
* * * * * * *
15842491 AGTATTTTTGTAATTATGA-ATTGATGGCACAATAGTCTATTTGGTTATATATCAATTTCTTATC
62 -GTATTTTCGTAATTATGATA-TGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATC
*
15842555 ATG
125 ATA
* * * * * *
15842558 TAATGGAAAGGACA-TTTGGTAATTTCACAAGAGATTATTTAATAAATAATTATAAGAGAATAGG
1 TAATGGAAAGG-CATTTTGATAATTTTA-TAGGGATTATTTAGTAAATAATTATAA-AGAAAAGG
** ** * * * * * * * *
15842622 CGTTTTTATAATTATGATAAGAAGGTATAATAGTCAAATTCG-TCACATGTCAACTTCCTATCAT
63 TATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCT-ACATGTCAATTTCTTATCAT
15842686 A
127 A
* * * * ** * **
15842687 TAATGAAAATGGTATTTTGGTAATTTAATAAAAGATTATTTAG-ATATAATTATAAGAGAATGGG
1 TAATGGAAA-GGCATTTTGATAATTTTAT-AGGGATTATTTAGTAAATAATTATAA-AGAAAAGG
* * * * * * * * * * *
15842751 TATTTTCATAATTGTGGTATGGGGGAATAATGGTCAATTTGGCTGCAAGTCAATTTTTTATCATG
63 TATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATA
** * * * *
15842816 TAATATAAGGGGTATTTTTG-TAATTTTATAGGGGATTATTTAGTAATTGATTAT-AAGAAAAGG
1 TAATGGAA-AGGCA-TTTTGATAATTTTATA-GGGATTATTTAGTAAATAATTATAAAGAAAA--
* ** ** * * ** *
15842879 GGTATTTTCGTAA-TAGTCA-ATTTGGG--TACAT-GTAAATTT--CT-TA-G-C-ATAT-AAAG
61 GGTATTTTCGTAATTA-TGATATGAGGGCATA-ATAGTCCATTTGGCTACATGTCAATTTCTTAT
*
15842932 GA-A
124 CATA
** * * * * * ** *
15842935 -AA-GGCCA---TTTTGAT-A-ATTTCCTA-GGGGATTATTTTGTAAATAATTATAGGGAAAGGG
1 TAATGGAAAGGCATTT--TGATAATT-TTATAGGGATTATTTAGTAAATAATTATAAAGAAA-AG
** * * * * * * * * * **
15842992 GTATCCTCATAATTATGGTATAAGGGAATAATAATCCATTTAGCCACAAGTGAATTTCTTATTGT
62 GTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCAT
*
15843057 G
127 A
* * * * * * *
15843058 T-ATGTAAAGGGTATTTTCATAATTTCATAAGGCATTATTTAGTAAATAATTATAAAGGAAGGGA
1 TAATGGAAA-GGCATTTTGATAATTTTAT-AGGGATTATTTAGTAAATAATTATAAAGAAAAGG-
* * * * * * *
15843122 TATTTTTGTAATTATTATATTATGGCATAATAGTCAATTTGGCAACACGTCAATTTCTTATCATA
63 TATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATA
* * * * * * *
15843187 TAATGAATAAGGCATATTT-CTAATTTTTTTAGAGATTATTTATTAATTAATTATAAATG-AAGG
1 TAATGGA-AAGGCAT-TTTGATAA-TTTTATAGGGATTATTTAGTAAATAATTATAAA-GAAAAG
* * * * * * *
15843250 GCTATTTTCGTAATGAT-AGTATGAGGGCTTAATAGTTCGTTTAG-TCACATATCAATTTCTAAT
62 G-TATTTTCGTAATTATGA-TATGAGGGCATAATAGTCCATTTGGCT-ACATGTCAATTTCTTAT
15843313 CATA
124 CATA
* ** * * * * **
15843317 TATTGGAAAAAGGTGTTCTGGTAATTTCATATGGGATTATTTAATAAATAATTATAAAAGAATGG
1 TAATGG--AAAGGCATTTTGATAATTTTATA-GGGATTATTTAGTAAATAATTAT-AAAGAAAAG
* * * * * * *
15843382 GTGTTTTCATAATTATGGTATGAAGGCATAATAATCCATTTGGCCACATGTCAATTTCTAATCAT
62 GTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCAT
15843447 A
127 A
* * * * * *
15843448 TAATGGAAATGGTATTTTCATAATTTCCTA-AGAGAGTT-TTTAGTAAATAAATAATAGAGAAAT
1 TAATGGAAA-GGCATTTTGATAATTT--TATAGGGA-TTATTTAGTAAAT-AATTATAAAGAAAA
* * * *
15843511 GGTATTTTCGTAATGATGGTATAAGGGCATAATAGTCCATTTGGTTACATGTCAATTTCTTATCA
61 GGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCA
15843576 TA
126 TA
* * * *
15843578 TAATGTAAAAGGCATTATGGTAATTTT-TCAAGGGATTATTTCGTAAATAATTATAAAAGAAAAG
1 TAATG-GAAAGGCATTTTGATAATTTTAT--AGGGATTATTTAGTAAATAATTAT-AAAGAAAAG
* * * * *
15843642 GTGTTTTCATAATTATGATATGA-GG-ATGCAATAGTCCATTTAGTTACATTTCAATTTCTTATC
62 GTATTTTCGTAATTATGATATGAGGGCAT--AATAGTCCATTTGGCTACATGTCAATTTCTTATC
15843705 ATA
125 ATA
* * * * * * *
15843708 AAAAGGAAAGAACATTTT-AGTAATTTCT-CAGGTGATTATTTAGTCATTAATTATAAGAGCAAA
1 TAATGGAAAG-GCATTTTGA-TAATTT-TATAGG-GATTATTTAGTAAATAATTATAA-AGAAAA
* * * * * *
15843771 GGCATTTTCATAATTATGGTATGAGGGCATAATAGTCTATTTCG-TCACATGTCAATTTTTTATC
61 GGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCT-ACATGTCAATTTCTTATC
15843835 ATA
125 ATA
* * * ** * *
15843838 AAATGGAAATGGTA-TTTG-TAATTTAATAAAAGATTATTTAGT-AATAATCAT-AAGAGAATGA
1 TAATGGAAA-GGCATTTTGATAATTTTAT-AGGGATTATTTAGTAAATAATTATAAAGA-AAAG-
* * ** * * * * * * * * *
15843899 GCATTTTTGTAATTACCATATGAGGGAATAATAGTACGTTTAGCCATAAGTTAACTTCTTATCAT
62 GTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCAT
*
15843964 G
127 A
*** * * * * * * * *
15843965 TAATGTCGAGGTTATTTTGTTAATTTCATTGAAGATTATTTAATAAATAATTATAACA-TAAGGG
1 TAATGGAAAGG-CATTTTGATAATTTTATAG-GGATTATTTAGTAAATAATTATAA-AGAAAAGG
** * ** ** * * * *
15844029 ATATTTTTTTAATTATAATATGAATGCATAATAGTGAATTTGGCCACATATAAATTTCTTAACAT
63 -TATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCAT
15844094 A
127 A
* * *
15844095 TAAAGAAAATGCCATTTTGATAATTTCCTAT-GGGATTATATTA-TAAATAATTAT-AAGACAAT
1 TAATGGAAA-GGCATTTTGATAATTT--TATAGGGATTAT-TTAGTAAATAATTATAAAGA-AA-
* * * * * * ** * *
15844157 GGGTATTTTCATAATTATGGTACGAGGTCATAATATTCCATTTTACCATATGTCAATTTCTTATC
60 AGGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATC
15844222 ATA
125 ATA
* * * * * *
15844225 CAAT-GAAATGGGCATTTT-AGTAATTTTTTGAAGGATTATTTAGGAGATAATTATAAGAAAAAA
1 TAATGGAAA--GGCATTTTGA-TAATTTTAT-AGGGATTATTTAGTAAATAATTATAA-AGAAAA
* * * * * * * **
15844288 GGTATTTTCATAATTACGGTTTGAGGGTATAATAGTCCATTTGTCTATA-GCTCAATTTCTTCCC
61 GGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATG-TCAATTTCTTATC
15844352 ATA
125 ATA
* ** * * ** * * *
15844355 TAACGGAAATGGTGTTTTGGTAATTTGATAAGCAATTATTT-GAAAATAATTATAAGAGAAGAGA
1 TAATGGAAA-GGCATTTTGATAATTTTAT-AGGGATTATTTAGTAAATAATTATAA-AGAAAAGG
* * * * * *
15844419 TATTTTTGTAATTATGGTATGAGAG-ATAATAGTCAATTTGACCT-CATG-CTAACTTCTTATCA
63 TATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTG-GCTACATGTC-AATTTCTTATCA
15844481 TA
126 TA
* * * * * *
15844483 TAATGGAAAAGGTATTTT-AGTTA-TTAATTA-GGATTATTT-GGAAATAATTAT-ATGATAAGT
1 TAATGG-AAAGGCATTTTGA-TAATTTTA-TAGGGATTATTTAGTAAATAATTATAAAGA-AA-A
* * * *
15844543 GGTATTTTTGTAATTAT-AGTATGATGGAATAATAGTCTATTTGG-TCACATGTCAA-TTCTTAT
61 GGTATTTTCGTAATTATGA-TATGAGGGCATAATAGTCCATTTGGCT-ACATGTCAATTTCTTAT
*
15844605 CATG
124 CATA
* ** * * * *
15844609 TAATGGAGAGGGTTTTTTAGGAAAATTGTA-GGGGATTATTTAGTAAATAATTATAAGAGAAGAG
1 TAATGGA-AAGGCATTTT--GATAATTTTATAGGGATTATTTAGTAAATAATTATAA-AGAAAAG
* * * * ** * ** * *
15844673 ATATTTCCGTTATTATGATATAAAAGCTTAATAGTATATTTGGAC-ACATGTCACTTTCTCATCC
62 GTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGG-CTACATGTCAATTTCTTAT-C
15844737 A-A
125 ATA
15844739 TAATGGAATAGGCA
1 TAATGGAA-AGGCA
15844753 GATTTAAAAT
Statistics
Matches: 2458, Mismatches: 578, Indels: 388
0.72 0.17 0.11
Matches are distributed among these distances:
112 34 0.01
113 14 0.01
114 5 0.00
115 7 0.00
117 1 0.00
118 3 0.00
119 1 0.00
120 2 0.00
121 6 0.00
122 2 0.00
123 2 0.00
124 5 0.00
125 8 0.00
126 72 0.03
127 103 0.04
128 243 0.10
129 809 0.33
130 832 0.34
131 284 0.12
132 25 0.01
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (127 bp):
TAATGGAAAGGCATTTTGATAATTTTATAGGGATTATTTAGTAAATAATTATAAAGAAAAGGTAT
TTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATA
Found at i:15841939 original size:260 final size:257
Alignment explanation
Indices: 15841393--15844752 Score: 2069
Period size: 260 Copynumber: 13.1 Consensus size: 257
15841383 TGTATATTAT
* * ** **
15841393 TAATGGAAAGGGTATTTTCATAATTTCATAAGGGATTATTTAGTAAATAATTATTAA-AGAAAAG
1 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTA-TAAGAG-AAAG
* * ** * * *
15841457 GTATGTTCGTAATTATGATACGAGTGCATAATAGTCCATTTGGTTACATGTTAATTTCTTATCAT
64 GTATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCAT
* * **
15841522 ATAAAAGGAAA-GGCATTTTGACAATTTTGTAGGGATTATTTAGTAAATAATTATAAGAGAAAGG
129 AT-AATGGAAAGGGCATTTTG-TAATTTCATAGGGATTATTTAGTAAATAATTATAAGAGAAAGG
* * * * *
15841586 GTATTTTTGTAATTACT-ATATAAGGGCATTATAATCCATTTTGCTACATGTCAATTTCTTATCA
192 GTATTTTCGTAATTA-TGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCA
15841650 TA
256 TA
* * * * *
15841652 TAATGGAAATGGCATTTTGGAAATTTTTTAAAGGATTATTTAGTAAATAACTATAAGAGATAGGT
1 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGT
* * * * *
15841717 AATTTCGTAGTTATGGTATAAGGGCATAAGAGTCCATTTGGTCACATGTCAACTTCTAATCATAT
66 ATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATAT
* * *
15841782 ATTGGAAAGGGCATTTCTGTAATTTCATAGGGAATTATTTAGTAAATAATTATGAGAGAAGGGGT
131 AATGGAAAGGGCATTT-TGTAATTTCATAGGG-ATTATTTAGTAAATAATTATAAGAGAAAGGGT
* ** *
15841847 ATTTTCGATAATTATGATATGAGGGCACAACT-GTTTATTTAGCTACATGTCAATTTCTTATCAT
194 ATTTTCG-TAATTATGATATGAGGGCATAA-TAGTCCATTTGGCTACATGTCAATTTCTTATCAT
15841911 A
257 A
* * *
15841912 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTGAGTAAATAATTATAAAAAAAAGGT
1 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGT
* * ** * **
15841977 GCTTTT-GTAATTATGATATGAA-GGCATAATAGTTTATTTAG-CTACAACTCAATTT-TTATCA
66 -ATTTTCGTAATTATGGTAT-AAGGGCATAATAGTCCATTTGGTC-ACATGTCAATTTCTTATCA
** * * * * * * *
15842038 TATAATGGAAAAAGTATTTCGATAATTTCATAGCGGGTTATTTAGTAAATAATTGTAACAAAAAA
128 TATAATGGAAAGGGCATTTTG-TAATTTCATAG-GGATTATTTAGTAAATAATTATAAGAGAAAG
* * * *
15842103 GGTATTTTCGTAATTAAGA-ATGAGGGCATAATAGTTCATTTAGG-GACATGCCAATTTCTTATC
191 GGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTT-GGCTACATGTCAATTTCTTATC
15842166 ATA
255 ATA
* ** * * * * * *
15842169 TAAT-GAAAAGGGTATTTTCCTAA--TTTGATGGG-TGTAATTTAGTAAATAAATGTTAGAGATG
1 TAATGGAAAA-GGCATTTTGGTAATTTTTTAAGGGAT-T-ATTTAGTAAATAATTATAAGAGA-A
* * * * * * * * *
15842230 AGTTATTTTTGTAGTTGTGGTA-AGATGGCATAAAAGTCCATTTGGCCACATGACAATTTCTAAT
62 AGGTATTTTCGTAATTATGGTATA-AGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTAT
* * * * *
15842294 CATATAATGGAAATGGTATTTTCATAATTTCATAGGAGATTATTTAG-AATATAAATATTAGAGA
126 CATATAATGGAAAGGGCATTTT-GTAATTTCATAGG-GATTATTTAGTAA-ATAATTATAAGAG-
* * * * * * * *
15842358 AAAGGGTATTTTCGTCATGATGGTACGAGGGCATCATAGTTCATTTGGCTACAAGTCAA-TTATT
187 AAAGGGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTT
15842422 ATCATA
252 ATCATA
* * * *
15842428 TAATGGAAAAGGCATTTTTGTACTTTTTTAAGGGATTATTTTGTAAATAATTATAAGAGAATGAG
1 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAGAGAAAG-G
* * * * * * * * *
15842493 TATTTTTGTAATTAT-GAATTGATGGCACAATAGTCTATTTGGTTATATATCAATTTCTTATCAT
65 TATTTTCGTAATTATGGTA-TAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCAT
* * * * * *
15842557 GTAATGGAAAGGACATTTGGTAATTTCACAAGAGATTATTTAATAAATAATTATAAGAGAATAGG
129 ATAATGGAAAGGGCATTTTGTAATTTCA-TAGGGATTATTTAGTAAATAATTATAAGAGAA-AGG
* * * * * * * * *
15842622 CGT-TTTT-ATAATTATGATAAGAAGGTATAATAGTCAAATTCG-TCACATGTCAACTTCCTATC
192 -GTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCT-ACATGTCAATTTCTTATC
15842684 ATA
255 ATA
* ** ** * *
15842687 TAAT-GAAAATGGTATTTTGGTAATTTAATAAAAGATTATTTAG-ATATAATTATAAGAGAATGG
1 TAATGGAAAA-GGCATTTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAGAGAA-AG
* * ** * * * *
15842750 GTATTTTCATAATTGTGGTATGGGGGAATAATGGTCAATTTGGCTGCA-A-GTCAATTTTTTATC
64 GTATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGG-T-CACATGTCAATTTCTTATC
* ** * * * * *
15842813 ATGTAATATAAGGGGTATTTTTGTAATTTTATAGGGGATTATTTAGTAATTGATTATAAGA-AAA
127 ATATAATGGAAAGGGCA-TTTTGTAATTTCATA-GGGATTATTTAGTAAATAATTATAAGAGAAA
* * *
15842877 GGGGTATTTTCGTAA-TA-G---T-----C-----A----ATTTGGGTACATGTAAATTTCTTAG
190 -GGGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTAT
15842923 CATA
254 CATA
* * ** * * *
15842927 TAAAGGAAAAGGCCATTTTGATAATTTCCTAGGGGATTATTTTGTAAATAATTAT-AGGGAAAGG
1 TAATGGAAAAGG-CATTTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAGAGAAA--
** * * * * * * * **
15842991 GGTATCCTCATAATTATGGTATAAGGGAATAATAATCCATTTAGCCACAAGTGAATTTCTTATTG
63 GGTATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCA
* * * * * *
15843056 TGT-ATGTAAAGGGTATTTTCATAATTTCATAAGGCATTATTTAGTAAATAATTATAA-AGGAAG
128 TATAATGGAAAGGGCATTTT-GTAATTTCAT-AGGGATTATTTAGTAAATAATTATAAGAGAAAG
* * * * * * *
15843119 GGATATTTTTGTAATTATTATATTATGGCATAATAGTCAATTTGGCAACACGTCAATTTCTTATC
191 GG-TATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATC
15843184 ATA
255 ATA
* * * * * *
15843187 TAAT-GAATAAGGCATATTT-CTAATTTTTTTAGAGATTATTTATTAATTAATTATAA-ATGAAG
1 TAATGGAA-AAGGCAT-TTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAGA-GAAA
* * * * * * * * *
15843249 GGCTATTTTCGTAATGATAGTATGAGGGCTTAATAGTTCGTTTAGTCACATATCAATTTCTAATC
63 GG-TATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATC
* * ** * * *
15843314 ATATATTGGAAAAAGGTGTTCTGGTAATTTCATATGGGATTATTTAATAAATAATTATAAAAGAA
127 ATATAATGG-AAAGGGCATT-TTGTAATTTCATA-GGGATTATTTAGTAAATAATTATAAGAGAA
* * * * * * * *
15843379 TGGGTGTTTTCATAATTATGGTATGAAGGCATAATAATCCATTTGGCCACATGTCAATTTCTAAT
189 AGGGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTAT
15843444 CATA
254 CATA
* * ** ** * *
15843448 TAATGGAAATGGTATTTTCATAATTTCCTAAGAGAGTT-TTTAGTAAATAAATA-ATAGAGAAAT
1 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGA-TTATTTAGTAAATAATTATA-AGAGAAA-
* *
15843511 GGTATTTTCGTAATGATGGTATAAGGGCATAATAGTCCATTTGGTTACATGTCAATTTCTTATCA
63 GGTATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCA
* * * * *
15843576 TATAATGTAAAAGGCATTATGGTAATTTTTCA-AGGGATTATTTCGTAAATAATTATAAAAGAAA
128 TATAATGGAAAGGGCATT-TTGTAA--TTTCATAGGGATTATTTAGTAAATAATTATAAGAGAAA
* * * * * *
15843640 AGGTGTTTTCATAATTATGATATGA-GG-ATGCAATAGTCCATTTAGTTACATTTCAATTTCTTA
190 GGGTATTTTCGTAATTATGATATGAGGGCAT--AATAGTCCATTTGGCTACATGTCAATTTCTTA
15843703 TCATA
253 TCATA
* * * * * * * *
15843708 AAAAGG-AAAGAACATTTTAGTAA-TTTCTCAGGTGATTATTTAGTCATTAATTATAAGAGCAAA
1 TAATGGAAAAG-GCATTTTGGTAATTTTTTAAGG-GATTATTTAGTAAATAATTATAAGAG-AAA
* * * * * *
15843771 GGCATTTTCATAATTATGGTATGAGGGCATAATAGTCTATTTCGTCACATGTCAATTTTTTATCA
63 GGTATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCA
* * * * ** * * *
15843836 TAAAATGGAAATGGTA-TTTGTAATTTAATAAAAGATTATTTAGT-AATAATCATAAGAGAATGA
128 TATAATGGAAAGGGCATTTTGTAATTTCAT-AGGGATTATTTAGTAAATAATTATAAGAGAAAGG
* * ** * * * * * * * * *
15843899 GCATTTTTGTAATTACCATATGAGGGAATAATAGTACGTTTAGCCATAAGTTAACTTCTTATCAT
192 GTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCAT
*
15843964 G
257 A
*** * * * * * * *
15843965 TAAT-GTCGAGGTTATTTTGTTAATTTCATTGAA--GATTATTTAATAAATAATTATAACATAAG
1 TAATGGAAAAGG-CATTTTGGTAATTT--TTTAAGGGATTATTTAGTAAATAATTATAAGAGAAA
** ** * ** * * * *
15844027 GGATATTTTTTTAATTATAATATGAA-TGCATAATAGTGAATTTGGCCACATATAAATTTCTTAA
63 GG-TATTTTCGTAATTATGGTAT-AAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTAT
* * * * * *
15844091 CATATAAAGAAAATGCCATTTTGATAATTTCCTATGGGATTATATTA-TAAATAATTATAAGACA
126 CATATAATGGAAAGGGCATTTTG-TAATTTCATA-GGGATTAT-TTAGTAAATAATTATAAGAGA
* * * * * * ** * *
15844155 ATGGGTATTTTCATAATTATGGTACGAGGTCATAATATTCCATTTTACCATATGTCAATTTCTTA
188 AAGGGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTA
15844220 TCATA
253 TCATA
* * * * * *
15844225 CAAT-GAAATGGGCATTTTAGTAATTTTTTGAA-GGATTATTTAGGAGATAATTATAAGAAAAAA
1 TAATGGAAA-AGGCATTTTGGTAATTTTTT-AAGGGATTATTTAGTAAATAATTATAAG-AGAAA
* * * * * * **
15844288 GGTATTTTCATAATTACGGTTTGAGGGTATAATAGTCCATTT-GTC-TATAGCTCAATTTCTTCC
63 GGTATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACAT-G-TCAATTTCTTAT
* * ** * ** *
15844351 CATATAACGGAAATGGTGTTTTGGTAATTTGATAAGCAATTATTT-GAAAATAATTATAAGAG-A
126 CATATAATGGAAAGGGCATTTT-GTAATTTCAT-AGGGATTATTTAGTAAATAATTATAAGAGAA
* * * * * * *
15844414 AGAGATATTTTTGTAATTATGGTATGAGAG-ATAATAGTCAATTTGACCT-CATG-CTAACTTCT
189 AG-GGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTG-GCTACATGTC-AATTTCT
15844476 TATCATA
251 TATCATA
* * * ** * * * *
15844483 TAATGGAAAAGGTATTTTAGTTATTAATT-A-GGATTATTT-GGAAATAATTATATGATAAGTGG
1 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAGAGAA-AGG
* * * * * * *
15844545 TATTTTTGTAATTATAGTATGATGGAATAATAGTCTATTTGGTCACATGTCAA-TTCTTATCATG
65 TATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATA
* ** * * *
15844609 TAATGGAGAGGGTTTTTTAGGAAAATT-GTAGGGGATTATTTAGTAAATAATTATAAGAG-AAGA
130 TAATGGAAAGGGCATTTT--GTAATTTCATA-GGGATTATTTAGTAAATAATTATAAGAGAAAG-
* * * * ** * ** * *
15844672 GATATTTCCGTTATTATGATATAAAAGCTTAATAGTATATTTGGAC-ACATGTCACTTTCTCATC
191 GGTATTTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGG-CTACATGTCAATTTCTTAT-
15844736 CA-A
254 CATA
*
15844739 TAATGGAATAGGCA
1 TAATGGAAAAGGCA
15844753 GATTTAAAAT
Statistics
Matches: 2389, Mismatches: 563, Indels: 301
0.73 0.17 0.09
Matches are distributed among these distances:
240 36 0.02
241 87 0.04
242 61 0.03
244 1 0.00
246 1 0.00
251 1 0.00
253 1 0.00
254 35 0.01
255 107 0.04
256 89 0.04
257 256 0.11
258 340 0.14
259 466 0.20
260 669 0.28
261 218 0.09
262 21 0.01
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (257 bp):
TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGT
ATTTTCGTAATTATGGTATAAGGGCATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATAT
AATGGAAAGGGCATTTTGTAATTTCATAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGTAT
TTTCGTAATTATGATATGAGGGCATAATAGTCCATTTGGCTACATGTCAATTTCTTATCATA
Found at i:15842101 original size:128 final size:130
Alignment explanation
Indices: 15841408--15842612 Score: 600
Period size: 129 Copynumber: 9.3 Consensus size: 130
15841398 GAAAGGGTAT
* * * *
15841408 TTTC-ATAATTTCATAAGGGATTATTTAGTAAATAATTATTAAAGAAAAGGTATGTTCGTAATTA
1 TTTCGATAATTTCATAAGGGATTATTGAGTAAATAATTATAAAAAAAAAGGTATTTTCGTAATTA
* * ** * * ** * * *
15841472 TGATACGAGTGCATAATAGTCCATTTGGTTACATGTTAATTTCTTATCATATAAAAGG-AAAGGC
66 TGATATGAGGGCATAATAGTTTATTTAGCTACAACTCAATTTCTTATCATAT-AATGGAAAAAGC
15841536 A
130 A
* * ** * * * * *
15841537 TTTTGACAATTTTGT-AGGGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTTGTAATTA
1 TTTCGATAATTTCATAAGGGATTATTGAGTAAATAATTATAAAAAAAAAGGTATTTTCGTAATTA
* * * ** * ** **
15841601 CT-ATATAAGGGCATTATAATCCATTTTGCTACATGTCAATTTCTTATCATATAATGGAAATGGC
66 -TGATATGAGGGCATAATAGTTTATTTAGCTACAACTCAATTTCTTATCATATAATGGAAAAAGC
15841665 A
130 A
* ** * * * * * * * *
15841666 TTTTGGA-AATTTTTTAAAGGATTATTTAGTAAATAACTAT-AAGAGATAGGTAATTTCGTAGTT
1 -TTTCGATAATTTCATAAGGGATTATTGAGTAAATAATTATAAAAAAAAAGGTATTTTCGTAATT
* * * ** * ** * * * **
15841729 ATGGTATAAGGGCATAAGAGTCCATTT-GGTCACATGTCAACTTCTAATCATATATTGGAAAGGG
65 ATGATATGAGGGCATAATAGTTTATTTAGCT-ACAACTCAATTTCTTATCATATAATGGAAAAAG
15841793 CA
129 CA
* * * * **
15841795 TTTCTG-TAATTTCAT-AGGGAATTATTTAGTAAATAATTATGAGAGAAGGGGTATTTTCGATAA
1 TTTC-GATAATTTCATAAGGG-ATTATTGAGTAAATAATTATAAAAAAAAAGGTATTTTCG-TAA
* **
15841858 TTATGATATGAGGGCACAACT-GTTTATTTAGCTACATGTCAATTTCTTATCATATAATGGAAAA
63 TTATGATATGAGGGCATAA-TAGTTTATTTAGCTACAACTCAATTTCTTATCATATAATGGAAAA
*
15841922 GGCA
127 AGCA
* * ** *
15841926 TTTTGGTAATTTTTTAAGGGATTATTGAGTAAATAATTAT-AAAAAAAAGGTGCTTTT-GTAATT
1 TTTCGATAATTTCATAAGGGATTATTGAGTAAATAATTATAAAAAAAAAGGT-ATTTTCGTAATT
* *
15841989 ATGATATGAAGGCATAATAGTTTATTTAGCTACAACTCAATTT-TTATCATATAATGGAAAAAGT
65 ATGATATGAGGGCATAATAGTTTATTTAGCTACAACTCAATTTCTTATCATATAATGGAAAAAGC
15842053 A
130 A
* * * *
15842054 TTTCGATAATTTCAT-AGCGGGTTATTTAGTAAATAATTGTAACAAAAAAGGTATTTTCGTAATT
1 TTTCGATAATTTCATAAG-GGATTATTGAGTAAATAATTATAAAAAAAAAGGTATTTTCGTAATT
* * ** * *
15842118 AAGA-ATGAGGGCATAATAGTTCATTTAGGGACATGC-CAATTTCTTATCATATAAT-GAAAAGG
65 ATGATATGAGGGCATAATAGTTTATTTAGCTACA-ACTCAATTTCTTATCATATAATGGAAAA-A
*
15842180 GTA
128 GCA
* * * * * * * * ** * * *
15842183 TTTTC-CTAATTTGAT--GGG-TGTAATTTAGTAAATAAATGTTAGAGATGAGTTATTTTTGTAG
1 -TTTCGATAATTTCATAAGGGAT-T-ATTGAGTAAATAATTATAAAAAAAAAGGTATTTTCGTAA
* * * * * ** * * *** * **
15842244 TTGTGGTAAGATGGCATAAAAGTCCATTTGGCCACATGACAATTTCTAATCATATAATGGAAATG
63 TTATGATATGAGGGCATAATAGTTTATTTAGCTACAACTCAATTTCTTATCATATAATGGAAAAA
*
15842309 GTA
128 GCA
* * * * * *
15842312 TTTTC-ATAATTTCAT-AGGAGATTATTTAG-AATATAAATATTAGAGAAAAGGGTATTTTCGTC
1 -TTTCGATAATTTCATAAGG-GATTATTGAGTAA-ATAATTA-TAAAAAAAAAGGTATTTTCGTA
* * * * * * * *
15842374 ATGATGGTACGAGGGCATCATAGTTCATTTGGCTACAAGTCAA-TTATTATCATATAATGGAAAA
62 ATTATGATATGAGGGCATAATAGTTTATTTAGCTACAACTCAATTTCTTATCATATAATGGAAAA
*
15842438 GGCA
127 AGCA
* * ** ** * * * *
15842442 TTTTTG-TACTTTTTTAAGGGATTATTTTGTAAATAATTAT-AAGAGAATGAGTATTTTTGTAAT
1 -TTTCGATAATTTCATAAGGGATTATTGAGTAAATAATTATAAAAAAAAAG-GTATTTTCGTAAT
* * * * * * *
15842505 TATGA-ATTGATGGCACAATAGTCTATTTGGTTATATA-TCAATTTCTTATCATGTAATGG-AAA
64 TATGATA-TGAGGGCATAATAGTTTATTTAGCTACA-ACTCAATTTCTTATCATATAATGGAAAA
*
15842567 GGACA
127 AG-CA
* * * * *
15842572 TTT-GGTAATTTCACAAGAGATTATTTAATAAATAATTATAA
1 TTTCGATAATTTCATAAGGGATTATTGAGTAAATAATTATAA
15842613 GAGAATAGGC
Statistics
Matches: 851, Mismatches: 180, Indels: 89
0.76 0.16 0.08
Matches are distributed among these distances:
126 1 0.00
127 5 0.01
128 146 0.17
129 412 0.48
130 142 0.17
131 138 0.16
132 7 0.01
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (130 bp):
TTTCGATAATTTCATAAGGGATTATTGAGTAAATAATTATAAAAAAAAAGGTATTTTCGTAATTA
TGATATGAGGGCATAATAGTTTATTTAGCTACAACTCAATTTCTTATCATATAATGGAAAAAGCA
Found at i:15842131 original size:388 final size:388
Alignment explanation
Indices: 15841393--15842194 Score: 897
Period size: 388 Copynumber: 2.1 Consensus size: 388
15841383 TGTATATTAT
*
15841393 TAATGGAAAGGGTATTTTCATAATTTCATAAGGGATTATTTAGTAAATAATTATTAAAGAAAAGG
1 TAATGGAAAGGGTATTTTCATAATTTCATAAGGGATTATTTAGTAAATAATTATGAAAGAAAAGG
* * * * *
15841458 TATGTTCGTAATTATGATACGAGTGCATAATAGTCCATTTGGTTACATGTTAATTTCTTATCATA
66 TATGTTCGTAATTATGATACGAGGGCACAATAGTCCATTTAGCTACATGTCAATTTCTTATCATA
* * *
15841523 TAAAAGGAAAGGCATTTTGACAATTTTGTAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGT
131 TAAAAGGAAAGGCATTTTGACAATTTTGTAGGGATTATTGAGTAAATAATTATAAGAAAAAAGGT
* * * **
15841588 ATTTTTGTAATTACTATATAAGGGCATTATAATCCATTTTGCTACATGTCAATTTCTTATCATAT
196 ACTTTTGTAATTACTATATAAGGGCATAATAATCCATTTAGCTACAACTCAATTTCTTATCATAT
** * ** * * *
15841653 AATGGAAATGGCATTTTGGAAATTTTTTAAAGGATTATTTAGTAAATAACTATAAGAGATAGGTA
261 AATGGAAAAAGCATTTTCGAAATTTCATAAAGGATTATTTAGTAAATAACTATAAAAAAAAGGTA
* * * *
15841718 ATTTCGTAGTTATGGTATAAGGGCATAAGAGTCCATTT-GGTCACATGTCAACTTCTAATCATA
326 ATTTCGTAATTATAGAATAAGGGCATAAGAGTCCATTTAGG-CACATGCCAACTTCTAATCATA
* * * * **
15841781 TATTGGAAAGGGCA-TTTCTGTAATTTCAT-AGGGAATTATTTAGTAAATAATTATGAGAGAAGG
1 TAATGGAAAGGGTATTTTC-ATAATTTCATAAGGG-ATTATTTAGTAAATAATTATGAAAGAAAA
* * **
15841844 GGTATTTTCGATAATTATGATATGAGGGCACAACT-GTTTATTTAGCTACATGTCAATTTCTTAT
64 GGTATGTTCG-TAATTATGATACGAGGGCACAA-TAGTCCATTTAGCTACATGTCAATTTCTTAT
* ** *
15841908 CATAT-AATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTGAGTAAATAATTATAA-AAA
127 CATATAAAAGG-AAAGGCATTTTGACAATTTTGT-AGGGATTATTGAGTAAATAATTATAAGAAA
* * **
15841971 AAAGGTGCTTTTGTAATTA-TGATATGAA-GGCATAATAGTTTATTTAGCTACAACTCAATTT-T
190 AAAGGTACTTTTGTAATTACT-ATAT-AAGGGCATAATAATCCATTTAGCTACAACTCAATTTCT
* ** * * *
15842033 TATCATATAATGGAAAAAGTA-TTTCGATAATTTCATAGCGGGTTATTTAGTAAATAATTGTAAC
253 TATCATATAATGGAAAAAGCATTTTCGA-AATTTCATAAAGGATTATTTAGTAAATAACTATAA-
* * * * * *
15842097 AAAAAAGGTATTTTCGTAATTA-AGAATGAGGGCATAATAGTTCATTTAGGGACATGCCAATTTC
316 AAAAAAGGTAATTTCGTAATTATAGAATAAGGGCATAAGAGTCCATTTAGGCACATGCCAACTTC
*
15842161 TTATCATA
381 TAATCATA
* *
15842169 TAATGAAAAGGGTATTTTCCTAATTT
1 TAATGGAAAGGGTATTTTCATAATTT
15842195 GATGGGTGTA
Statistics
Matches: 341, Mismatches: 61, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
387 13 0.04
388 162 0.48
389 138 0.40
390 28 0.08
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (388 bp):
TAATGGAAAGGGTATTTTCATAATTTCATAAGGGATTATTTAGTAAATAATTATGAAAGAAAAGG
TATGTTCGTAATTATGATACGAGGGCACAATAGTCCATTTAGCTACATGTCAATTTCTTATCATA
TAAAAGGAAAGGCATTTTGACAATTTTGTAGGGATTATTGAGTAAATAATTATAAGAAAAAAGGT
ACTTTTGTAATTACTATATAAGGGCATAATAATCCATTTAGCTACAACTCAATTTCTTATCATAT
AATGGAAAAAGCATTTTCGAAATTTCATAAAGGATTATTTAGTAAATAACTATAAAAAAAAGGTA
ATTTCGTAATTATAGAATAAGGGCATAAGAGTCCATTTAGGCACATGCCAACTTCTAATCATA
Found at i:15842390 original size:517 final size:513
Alignment explanation
Indices: 15841393--15842612 Score: 1264
Period size: 517 Copynumber: 2.4 Consensus size: 513
15841383 TGTATATTAT
* * * ** *
15841393 TAATGGAAAGGGTATTTTCATAATTTCATAAGGGATTATTTAGTAAATAATTATTAAAGAAAAGG
1 TAATGGAAAAGGCATTTTCGTAATTTTTTAAGGGATTATTTAGTAAATAATTA-TAAAAAAAAGG
* * * * *
15841458 TATGTTCGTAATTATGATACG-AGTGCATAATAGTCCATTTGGTTACATGTTAATTTCTTATCAT
65 TAT-TTTGTAATTATGATATGAAG-GCATAATAGTCTATTTGGTTACA-ATCAATTTCTTATCAT
* * * ** * * *
15841522 ATAAAAGG-AAAGGCATTTTGACAATTTTGTAGGGATTATTTAGTAAATAATTATAAGAGAAAGG
127 AT-AATGGAAAAAGCATTTCGACAATTTCATAGGGATTATTTAGTAAATAATTATAACAAAAAAG
* ** * * * *
15841586 GTATTTTTGTAATTACTATATAAGGGCATTATAATCCATTTTGCTACATGTCAATTTCTTATCAT
191 GTATTTTCGTAATTAAGATATAAGGGCATAATAATCCATTTAGCGACATGCCAATTTCTTATCAT
* * ** *
15841651 ATAATGGAAATGGCATTTTGGAAATTTTTTAAAGGATTATTTAGTAAATAACTATAAGAGATAGG
256 ATAATGAAAAGGGCATTTTCCAAA--TTTTAAAGGATTATTTAGTAAATAAATATAAGAGATAGG
* * *
15841716 TAATTTCGTAGTTATGGTATAAGGGCATAAGAGTCCATTTGGTCACATGTCAACTTCTAATCATA
319 TAATTTCGTAGTTATGGTATAAGGGCATAAAAGTCCATTTGGCCACATGACAACTTCTAATCATA
* * * *
15841781 TATTGGAAAGGGCATTTCTGTAATTTCATAGGGAATTATTTAGTAAATAATTATGAGAGAAGGGG
384 TAATGGAAAGGGCATTTCTATAATTTCATAGGGAATTATTTAGTAAATAAATATGAGAGAAAGGG
* * * * *
15841846 TATTTTCGATAATTATGATATGAGGGCA-CA-ACTGTTTATTTAGCTACATGTCAATTTCTTATC
449 TATTTTCGATAATGATGATACGAGGGCATCATA--GTTCATTTAGCTACAAGTCAA-TTATTATC
15841909 ATA
511 ATA
* *
15841912 TAATGGAAAAGGCATTTTGGTAATTTTTTAAGGGATTATTGAGTAAATAATTATAAAAAAAAGGT
1 TAATGGAAAAGGCATTTTCGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAAAAAAAGGT
* * * *
15841977 GCTTTTGTAATTATGATATGAAGGCATAATAGTTTATTTAGCTACAACTCAATTT-TTATCATAT
66 -ATTTTGTAATTATGATATGAAGGCATAATAGTCTATTTGGTTACAA-TCAATTTCTTATCATAT
* * * *
15842041 AATGGAAAAAGTATTTCGATAATTTCATAGCGGGTTATTTAGTAAATAATTGTAACAAAAAAGGT
129 AATGGAAAAAGCATTTCGACAATTTCATAG-GGATTATTTAGTAAATAATTATAACAAAAAAGGT
* * * *
15842106 ATTTTCGTAATTAAGA-ATGAGGGCATAATAGTTCATTTAGGGACATGCCAATTTCTTATCATAT
193 ATTTTCGTAATTAAGATATAAGGGCATAATAATCCATTTAGCGACATGCCAATTTCTTATCATAT
* * * * * * * *
15842170 AATGAAAAGGGTATTTTCCTAA-TTTGATGGGTGTAATTTAGTAAATAAATGTTAGAGATGAGTT
258 AATGAAAAGGGCATTTTCCAAATTTTAAAGGAT-T-ATTTAGTAAATAAATATAAGAGAT-AGGT
* * * * *
15842234 ATTTTTGTAGTTGTGGTA-AGATGGCATAAAAGTCCATTTGGCCACATGACAATTTCTAATCATA
320 AATTTCGTAGTTATGGTATA-AGGGCATAAAAGTCCATTTGGCCACATGACAACTTCTAATCATA
* * *
15842298 TAATGGAAATGGTATTT-TCATAATTTCATA-GGAGATTATTTAG-AATATAAATATTAGAGAAA
384 TAATGGAAAGGGCATTTCT-ATAATTTCATAGGGA-ATTATTTAGTAA-ATAAATATGAGAG-AA
* * *
15842360 AGGGTATTTTCG-TCATGATGGTACGAGGGCATCATAGTTCATTTGGCTACAAGTCAATTATTAT
445 AGGGTATTTTCGATAATGATGATACGAGGGCATCATAGTTCATTTAGCTACAAGTCAATTATTAT
15842424 CATA
510 CATA
* * * * * *
15842428 TAATGGAAAAGGCATTTTTGTACTTTTTTAAGGGATTATTTTGTAAATAATTATAAGAGAATGAG
1 TAATGGAAAAGGCATTTTCGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAAAAAAAG-G
* * *
15842493 TATTTTTGTAATTATGA-ATTGATGGCACAATAGTCTATTTGGTTATATATCAATTTCTTATCAT
65 TA-TTTTGTAATTATGATA-TGAAGGCATAATAGTCTATTTGGTTACA-ATCAATTTCTTATCAT
* * ** * * *
15842557 GTAATGG-AAAGGACATTT-GGTAATTTCACAAGAGATTATTTAATAAATAATTATAA
127 ATAATGGAAAAAG-CATTTCGACAATTTCA-TAGGGATTATTTAGTAAATAATTATAA
15842613 GAGAATAGGC
Statistics
Matches: 580, Mismatches: 99, Indels: 46
0.80 0.14 0.06
Matches are distributed among these distances:
514 7 0.01
515 1 0.00
516 99 0.17
517 295 0.51
518 128 0.22
519 50 0.09
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (513 bp):
TAATGGAAAAGGCATTTTCGTAATTTTTTAAGGGATTATTTAGTAAATAATTATAAAAAAAAGGT
ATTTTGTAATTATGATATGAAGGCATAATAGTCTATTTGGTTACAATCAATTTCTTATCATATAA
TGGAAAAAGCATTTCGACAATTTCATAGGGATTATTTAGTAAATAATTATAACAAAAAAGGTATT
TTCGTAATTAAGATATAAGGGCATAATAATCCATTTAGCGACATGCCAATTTCTTATCATATAAT
GAAAAGGGCATTTTCCAAATTTTAAAGGATTATTTAGTAAATAAATATAAGAGATAGGTAATTTC
GTAGTTATGGTATAAGGGCATAAAAGTCCATTTGGCCACATGACAACTTCTAATCATATAATGGA
AAGGGCATTTCTATAATTTCATAGGGAATTATTTAGTAAATAAATATGAGAGAAAGGGTATTTTC
GATAATGATGATACGAGGGCATCATAGTTCATTTAGCTACAAGTCAATTATTATCATA
Found at i:15845326 original size:131 final size:130
Alignment explanation
Indices: 15844793--15845367 Score: 365
Period size: 131 Copynumber: 4.5 Consensus size: 130
15844783 TGTATATTAT
* * * * * *
15844793 TAATGAAAAAGGTATTTTCGTAATTTTATATGAGATTATTTAGTAAAAAATTATT-AGA-GATAG
1 TAATGGAAATGGTATTTTCATAATTTCATA-GAGATTATTTAGTAAATAATTATTAAGAGGA-AA
* * * * * * ** * **
15844856 GGTATTTTCATAATTATGGTATGCGGCCATAATAGTCCATTT-GTCTATGTGGCAATTTCATATC
64 GGTATTTTTATAACTATGGCACGTGGGCATAATAGTCCATTTAG-CTACATGTCAATTTTTTATC
15844920 ATA
128 ATA
* ** * ** *
15844923 TAATGGGAATGACATTATGGTAATTTTC-TAGGGGATTATTT-GATAAATAATTA-T-AGA-GAA
1 TAATGGAAATGGTATTTTCATAA-TTTCATA-GAGATTATTTAG-TAAATAATTATTAAGAGGAA
* * * * *** * ** * * * *
15844983 GGGGCATTTTTGTAATTATAATATGAAGGCACAATAGTCCATTCAGCTACATGTGAATTTCTTAT
63 -AGGTATTTTTATAACTATGGCACGTGGGCATAATAGTCCATTTAGCTACATGTCAATTTTTTAT
15845048 CATA
127 CATA
* *
15845052 TAATGAAAATGGTA-TTTCATAGTTTCAT--AGATTATTTAGTAAATAATTA-TAAGAGGAAAGG
1 TAATGGAAATGGTATTTTCATAATTTCATAGAGATTATTTAGTAAATAATTATTAAGAGGAAAGG
* * * * * * * * * **
15845113 TATTTTTGTAATTATGGTATGTGGGCATAATAGTTCATTTGGCCACGT-TGCAATTTTTAATTGT
66 TATTTTTATAACTATGGCACGTGGGCATAATAGTCCATTTAGCTACATGT-CAATTTTTTATCAT
15845177 A
130 A
* * *
15845178 TAATAGAAATTGTATTTTCATAATTCCATAAGAGATTATTTAGTAAATAATTATTAA-A-GAAAG
1 TAATGGAAATGGTATTTTCATAATTTCAT-AGAGATTATTTAGTAAATAATTATTAAGAGGAAAG
*
15845241 GATATTTTTCATAACTATGGCACGAT-GGCATAATAATCCATTTAGCTACATGTCAATTTTTTAT
65 G-TATTTTT-ATAACTATGGCACG-TGGGCATAATAGTCCATTTAGCTACATGTCAATTTTTTAT
15845305 CATA
127 CATA
* * * ** *
15845309 AAATGGAAAGGGCATTTTGGTAATTTCATAGAGGATTATATAGTAAATAATTA-TAAGAG
1 TAATGGAAATGGTATTTTCATAATTTCATAGA-GATTATTTAGTAAATAATTATTAAGAG
15845368 AAGAGACATT
Statistics
Matches: 346, Mismatches: 78, Indels: 40
0.75 0.17 0.09
Matches are distributed among these distances:
125 20 0.06
126 64 0.18
127 19 0.05
128 6 0.02
129 74 0.21
130 72 0.21
131 89 0.26
132 2 0.01
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (130 bp):
TAATGGAAATGGTATTTTCATAATTTCATAGAGATTATTTAGTAAATAATTATTAAGAGGAAAGG
TATTTTTATAACTATGGCACGTGGGCATAATAGTCCATTTAGCTACATGTCAATTTTTTATCATA
Found at i:15845794 original size:130 final size:130
Alignment explanation
Indices: 15844793--15846117 Score: 875
Period size: 129 Copynumber: 10.2 Consensus size: 130
15844783 TGTATATTAT
* * * * *
15844793 TAATGAAAAAGGTATTTTCGTAATTTTATATGAGATTATTTAGTAAAAAATTATTAGAGATAG-G
1 TAATGAAAAGGGTATTTTCGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGA-AGAG
* * * * ** *
15844857 GTATTTTCATAATTATGGTATG-CGGCCATAATAGTCCATTTGTCTATGTGGCAATTTC-ATATC
65 GTATTTTCGTAATTATGGTATGAAGG-CATAATAGTCCATTTGGCCACATGTCAATTTCTA-ATC
15844920 ATA
128 ATA
** * ** * * * *
15844923 TAATGGGAATGACATTATGGTAATTTTC-TAGGGGATTATTT-GATAAATAATTAT-AGAGAAGG
1 TAATGAAAAGGGTATTTTCGTAA-TTTCATAGGAGATTATTTAG-TAAATAATTATAAGAGAAGA
* * ** * ** * * *
15844985 GGCATTTTTGTAATTATAATATGAAGGCACAATAGTCCATTCAGCTACATGTGAATTTCTTATCA
64 GGTATTTTCGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCA
15845050 TA
129 TA
* * *
15845052 TAATGAAAATGGTA-TTTCATAGTTTCAT---AGATTATTTAGTAAATAATTATAAGAGGAA-AG
1 TAATGAAAAGGGTATTTTCGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGA-GAAGAG
* ** * * * **
15845112 GTATTTTTGTAATTATGGTATGTGGGCATAATAGTTCATTTGGCCACGT-TGCAATTTTTAATTG
65 GTATTTTCGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCACATGT-CAATTTCTAATCA
15845176 TA
129 TA
** * * *
15845178 TAAT-AGAAATTGTATTTTCATAATTCCATAAGAGATTATTTAGTAAATAATTATTAA-AGAA-A
1 TAATGA-AAAGGGTATTTTCGTAATTTCATAGGAGATTATTTAGTAAATAATTA-TAAGAGAAGA
* * * * * * * * * *
15845240 GGATATTTTTCATAACTATGGCACGATGGCATAATAATCCATTTAGCTACATGTCAATTTTTTAT
64 GG-TA-TTTTCGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAAT
15845305 CATA
127 CATA
* * * * *
15845309 AAATGGAAAGGGCATTTTGGTAATTTCATA-GAGGATTATATAGTAAATAATTATAAGAGAAGAG
1 TAATGAAAAGGGTATTTTCGTAATTTCATAGGA-GATTATTTAGTAAATAATTATAAGAGAAGAG
** ** * * * * * * * *
15845373 ACA-TTTCGTAATTACAGTAT-AAGGGCTTAATTGTCTATTTGGACACTTATCAACTTCTTATCA
65 GTATTTTCGTAATTATGGTATGAA-GGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCA
15845436 TA
129 TA
* * * * * * * *
15845438 TAATGAAAAAGATATTTTGGTAATTTAAT-GTGGGATTATTTAGT-AATAATTACAAAAGATG-G
1 TAATGAAAAGGGTATTTTCGTAATTTCATAG-GAGATTATTTAGTAAATAATTATAAGAGAAGAG
* * * * * *** *
15845500 GAGATTTTTGGGCAATTAT-GT-TGTAAGGAAATAATAATCCATTTAATCACATGTTAATTTCTA
65 G-TA-TTTT-CGTAATTATGGTATG-AAGG-CATAATAGTCCATTTGGCCACATGTCAATTTCTA
15845563 ATCATA
125 ATCATA
* * * * * *
15845569 TATTGGACAAGGTGT-TTTT-GT-ATTTCATAAGG-GATTATGTAGTACATAATTATAAAAAAAA
1 TAAT-GAAAAGG-GTATTTTCGTAATTTCAT-AGGAGATTATTTAGTAAATAATTAT--AAGAGA
* * * * *
15845630 AGAGATATTTTCGTAATTATGGTATGATA-GCATAATAATCCATTTGGCCATATTTTAATTTCTA
61 AGAGGTATTTTCGTAATTATGGTATGA-AGGCATAATAGTCCATTTGGCCACATGTCAATTTCTA
15845694 ATCATA
125 ATCATA
* * * *
15845700 TAATAAAAAGGGTATTTTCATAATTTCATAGGAGATTATTTAGTAAATAGTTATAAGATAAGAGG
1 TAATGAAAAGGGTATTTTCGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGAGG
* * ** **
15845765 TATTTTCGTAATTATGATATGAAGGCATAATAGTCAATTTGGTTACATGGAAATTTCTTAA-CAT
66 TATTTTCGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTC-TAATCAT
15845829 A
130 A
* * * * * *
15845830 TAATGAAAATGGCATTTTGGTAATTTTATAGTG-GATTATTTAGCAAATAATTATAAGAAAAG-G
1 TAATGAAAAGGGTATTTTCGTAATTTCATAG-GAGATTATTTAGTAAATAATTATAAGAGAAGAG
* *** *
15845893 AGTA-TTTCGTAATTATGGTATGAAGGCATAATAGTTCATTCAACCACATGTCAATTTCTTATCA
65 -GTATTTTCGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCA
15845957 TA
129 TA
* * * * * * * *
15845959 TAATTAAAAGGGCATTTTAGTAATTTCATAAGAAATTTTTTAGTAAATAATTATAAAAGAAGTGG
1 TAATGAAAAGGGTATTTTCGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGAGG
** * * * * *
15846024 TATTTTCAAAATTAAGGTAT-AAGGGTATAATAGT-CTTTTCGGTCACATGTCAATTTCTTATCA
66 TATTTTCGTAATTATGGTATGAA-GGCATAATAGTCCATTT-GGCCACATGTCAATTTCTAATCA
15846087 TA
129 TA
* *
15846089 TAATG-AAAGGGCATTTTGGTAATTTCATA
1 TAATGAAAAGGGTATTTTCGTAATTTCATA
15846118 CTATCATACC
Statistics
Matches: 929, Mismatches: 208, Indels: 117
0.74 0.17 0.09
Matches are distributed among these distances:
125 21 0.02
126 64 0.07
127 20 0.02
128 26 0.03
129 279 0.30
130 264 0.28
131 197 0.21
132 46 0.05
133 11 0.01
134 1 0.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (130 bp):
TAATGAAAAGGGTATTTTCGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGAGG
TATTTTCGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATA
Found at i:15845959 original size:259 final size:258
Alignment explanation
Indices: 15844793--15846117 Score: 916
Period size: 259 Copynumber: 5.1 Consensus size: 258
15844783 TGTATATTAT
* * * * * * * *
15844793 TAATGAAAAAGGTATTTTCGTAATTTTATATGAGATTATTTAGTAAAAAATTATTAGAGATAG-G
1 TAATGAAAAGGGCATTTTGGTAATTTCATA-GGGATTATTTAGTAAATAATTATAAGA-AAAGAG
* * * * * * ** * *
15844857 GTATTTTCATAATTATGGTATG-CGGCCATAATAGTCCATTTGTCTATGTGGCAATTTCATATCA
64 ATATTTTCGTAATTATGGTATGAAGG-CATAATAGTTCATTTGACCACAT-TCAATTTCTTATCA
*** * ** * ** *
15844921 TATAATGGGAATGACATTATGGTAATTTTC-TAGGGGATTATTT-GATAAATAATTAT-AGAGAA
127 TATAATAAAAAGGGTATTTTCATAA-TTTCATAGGAGATTATTTAG-TAAATAATTATAAGAGAA
* * * * * * * *
15844983 GGGGCATTTTTGTAATTATAATATGAAGGCACAATAGTCCATTCAGCTACATGTGAATTTCTTAT
190 GAGGTATTTTCGTAATTATGATATGAAGGCATAATAGTCCATTTAGTTACATGTCAATTTCTTAT
15845048 CATA
255 CATA
* * ** *
15845052 TAATGAAAATGGTA-TTTCATAGTTTCATA--GATTATTTAGTAAATAATTATAAGAGGAAAG-G
1 TAATGAAAAGGGCATTTTGGTAATTTCATAGGGATTATTTAGTAAATAATTATAAGA--AAAGAG
* ** * * **
15845113 -TATTTTTGTAATTATGGTATGTGGGCATAATAGTTCATTTGGCCACGTTGCAATTT-TTAATTG
64 ATATTTTCGTAATTATGGTATGAAGGCATAATAGTTCATTTGACCACATT-CAATTTCTT-ATCA
* ** * *
15845176 TATAATAGAAATTGTATTTTCATAATTCCATAAGAGATTATTTAGTAAATAATTATTAA-AGAA-
127 TATAATAAAAAGGGTATTTTCATAATTTCATAGGAGATTATTTAGTAAATAATTA-TAAGAGAAG
* * ** * * * * *
15845239 AGGATATTTTTCATAACTATGGCACGATGGCATAATAATCCATTTAGCTACATGTCAATTTTTTA
191 AGG-TA-TTTTCGTAATTATGATATGAAGGCATAATAGTCCATTTAGTTACATGTCAATTTCTTA
15845304 TCATA
254 TCATA
* * * *
15845309 AAATGGAAAGGGCATTTTGGTAATTTCATAGAGGATTATATAGTAAATAATTATAAGAGAAGAGA
1 TAATGAAAAGGGCATTTTGGTAATTTCATAG-GGATTATTTAGTAAATAATTATAAGAAAAGAGA
* ** * * * *
15845374 CA-TTTCGTAATTACAGTAT-AAGGGCTTAATTG-TCTATTTGGA-CACTTATCAACTTCTTATC
65 TATTTTCGTAATTATGGTATGAA-GGCATAATAGTTC-ATTT-GACCACAT-TCAATTTCTTATC
* ** * * * *
15845435 ATATAATGAAAAA-GATATTTTGGTAATTTAAT-GTGGGATTATTTAGT-AATAATTACAAAAGA
126 ATATAAT-AAAAAGGGTATTTTCATAATTTCATAG-GAGATTATTTAGTAAATAATTATAAGAGA
* * * * * * * * *
15845497 TG-GGAGATTTTTGGGCAATTATG-T-TGTAAGGAAATAATAATCCATTTAATCACATGTTAATT
189 AGAGG-TA-TTTT-CGTAATTATGATATG-AAGG-CATAATAGTCCATTTAGTTACATGTCAATT
*
15845559 TCTAATCATA
249 TCTTATCATA
* * * * * *
15845569 TATTGGACAAGGTG--TTTTTGT-ATTTCATAAGGGATTATGTAGTACATAATTATAAAAAAAAA
1 TAAT-GAAAAGG-GCATTTTGGTAATTTCAT-AGGGATTATTTAGTAAATAATTAT--AAGAAAA
* * * * * *
15845631 GAGATATTTTCGTAATTATGGTATGATA-GCATAATAATCCATTTGGCCATATTTTAATTTCTAA
61 GAGATATTTTCGTAATTATGGTATGA-AGGCATAATAGTTCATTTGACCACA-TTCAATTTCTTA
* *
15845695 TCATATAATAAAAAGGGTATTTTCATAATTTCATAGGAGATTATTTAGTAAATAGTTATAAGATA
124 TCATATAATAAAAAGGGTATTTTCATAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGA
* * **
15845760 AGAGGTATTTTCGTAATTATGATATGAAGGCATAATAGTCAATTTGGTTACATGGAAATTTCTTA
189 AGAGGTATTTTCGTAATTATGATATGAAGGCATAATAGTCCATTTAGTTACATGTCAATTTCTTA
*
15845825 ACATA
254 TCATA
* * *
15845830 TAATGAAAATGGCATTTTGGTAATTTTATAGTGGATTATTTAGCAAATAATTATAAGAAAAG-GA
1 TAATGAAAAGGGCATTTTGGTAATTTCATAG-GGATTATTTAGTAAATAATTATAAGAAAAGAGA
**
15845894 GTA-TTTCGTAATTATGGTATGAAGGCATAATAGTTCATTCAACCACATGTCAATTTCTTATCAT
65 -TATTTTCGTAATTATGGTATGAAGGCATAATAGTTCATTTGACCACAT-TCAATTTCTTATCAT
* * * * * * *
15845958 ATAATTAAAAGGGCATTTT-AGTAATTTCATAAGAAATTTTTTAGTAAATAATTATAAAAGAAGT
128 ATAATAAAAAGGGTATTTTCA-TAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGA
** * * * * * *
15846022 GGTATTTTCAAAATTAAGGTAT-AAGGGTATAATAGT-CTTTTCGGTCACATGTCAATTTCTTAT
192 GGTATTTTCGTAATTATGATATGAA-GGCATAATAGTCCATTT-AGTTACATGTCAATTTCTTAT
15846085 CATA
255 CATA
15846089 TAATG-AAAGGGCATTTTGGTAATTTCATA
1 TAATGAAAAGGGCATTTTGGTAATTTCATA
15846118 CTATCATACC
Statistics
Matches: 835, Mismatches: 176, Indels: 111
0.74 0.16 0.10
Matches are distributed among these distances:
254 4 0.00
255 109 0.13
256 14 0.02
257 61 0.07
258 57 0.07
259 227 0.27
260 132 0.16
261 103 0.12
262 106 0.13
263 19 0.02
264 3 0.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (258 bp):
TAATGAAAAGGGCATTTTGGTAATTTCATAGGGATTATTTAGTAAATAATTATAAGAAAAGAGAT
ATTTTCGTAATTATGGTATGAAGGCATAATAGTTCATTTGACCACATTCAATTTCTTATCATATA
ATAAAAAGGGTATTTTCATAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGAGGTA
TTTTCGTAATTATGATATGAAGGCATAATAGTCCATTTAGTTACATGTCAATTTCTTATCATA
Found at i:15846011 original size:391 final size:388
Alignment explanation
Indices: 15844947--15846016 Score: 950
Period size: 391 Copynumber: 2.8 Consensus size: 388
15844937 TTATGGTAAT
* * *
15844947 TTTC-TAGGGGATTATTT-GATAAATAATTAT-AGAGAAGGGGCATTTTTGTAATTATAATATGA
1 TTTCATAGGAGATTATTTAG-TAAATAATTATAAGAGAAGAGGCATTTTCGTAATTATAATATGA
* * ** * **
15845009 AGGCACAATAGTCCATTCAGCTACATGTGAATTTCTTATCATATAATGAAAATGGTA-TTTCATA
65 AGGCATAATAGTCAATTTGGATACATG-GAATTTCTTATCATATAATGAAAATGGTATTTTGGTA
* * *
15845073 GTTTCATA---GATTATTTAGTAAATAATTATAAGAGGAAA-G-GTATTTTTGTAATTATGGTAT
129 ATTTAATAGTGGATTATTTAG-AAATAATTATAAGA--AAAGGAGTA-TTTCGTAATTATGGTAT
** ** * ** * *
15845133 GTGGGCATAATAGTTCATTTGGCCACGT-TGCAATTT-TTAATTGTATAA-TAGAAATTGTATTT
190 GAAGGCATAATAGTTCATTTAACCACATGT-CAATTTCTT-ATCATATAATTA-AAA-GGGATTT
* * *
15845195 TCA-TAATTCCATAAGAGATTATTTAGTAAATAATTAT-TAAAGAAAGGATATTTTTCATAACTA
251 T-AGTAATTTCATAAGAGATTATTTAGTAAATAATTATAAAAAAAAAGGATATTTTTCATAACTA
* * * * **
15845258 TGGCACGATGGCATAATAATCCATTTAGCTACATGTCAATTTTTTATCATAAAATGGAAAGGGCA
315 TGGCACGATAGCATAATAATCCATTTAGCCACATGTCAATTTCTAATCATAAAATAAAAAGGGCA
**
15845323 TTTTGGTAA
380 TTTTCATAA
* * * *
15845332 TTTCATA-GAGGATTATATAGTAAATAATTATAAGAGAAGAGACA-TTTCGTAATTACAGTAT-A
1 TTTCATAGGA-GATTATTTAGTAAATAATTATAAGAGAAGAGGCATTTTCGTAATTATAATATGA
* * * * * * * *
15845394 AGGGCTTAATTGTCTATTTGGACACTTAT-CAACTTCTTATCATATAATGAAAAAGATATTTTGG
65 A-GGCATAATAGTCAATTTGGATAC--ATGGAATTTCTTATCATATAATGAAAATGGTATTTTGG
* * * * * *
15845458 TAATTTAAT-GTGGGATTATTTAGTAATAATTACAA-AAGATGGGAGATTTTTGGGCAATTAT-G
127 TAATTTAATAGT-GGATTATTTAGAAATAATTATAAGAA-A-AGGAG-TATTT-CGTAATTATGG
* * * * * * *
15845520 T-TGTAAGGAAATAATAATCCATTTAATCACATGTTAATTTCTAATCATAT-ATTGGACAAGGTG
187 TATG-AAGG-CATAATAGTTCATTTAACCACATGTCAATTTCTTATCATATAATT--AAAAGG-G
* * * * *
15845583 -TTTTTGT-ATTTCATAAGGGATTATGTAGTACATAATTATAAAAAAAAAGAGATA-TTTTCGTA
247 ATTTTAGTAATTTCATAAGAGATTATTTAGTAAATAATTATAAAAAAAAAG-GATATTTTTCATA
* * * * * * * *
15845645 ATTATGGTATGATAGCATAATAATCCATTTGGCCATATTTTAATTTCTAATCATATAATAAAAAG
311 ACTATGGCACGATAGCATAATAATCCATTTAGCCACATGTCAATTTCTAATCATAAAATAAAAAG
*
15845710 GGTATTTTCATAA
376 GGCATTTTCATAA
* * * *
15845723 TTTCATAGGAGATTATTTAGTAAATAGTTATAAGATAAGAGGTATTTTCGTAATTATGATATGAA
1 TTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGAGGCATTTTCGTAATTATAATATGAA
* * *
15845788 GGCATAATAGTCAATTTGGTTACATGGAAATTTCTTAACATATAATGAAAATGGCATTTTGGTAA
66 GGCATAATAGTCAATTTGGATACATGG-AATTTCTTATCATATAATGAAAATGGTATTTTGGTAA
*
15845853 TTTTATAGTGGATTATTTAGCAAATAATTATAAGAAAAGGAGTATTTCGTAATTATGGTATGAAG
130 TTTAATAGTGGATTATTTAG-AAATAATTATAAGAAAAGGAGTATTTCGTAATTATGGTATGAAG
*
15845918 GCATAATAGTTCATTCAACCACATGTCAATTTCTTATCATATAATTAAAAGGGCATTTTAGTAAT
194 GCATAATAGTTCATTTAACCACATGTCAATTTCTTATCATATAATTAAAAGGG-ATTTTAGTAAT
* *
15845983 TTCATAAGAAATTTTTTAGTAAATAATTATAAAA
258 TTCATAAGAGATTATTTAGTAAATAATTATAAAA
15846017 GAAGTGGTAT
Statistics
Matches: 532, Mismatches: 110, Indels: 80
0.74 0.15 0.11
Matches are distributed among these distances:
385 7 0.01
386 75 0.14
387 22 0.04
388 4 0.01
389 18 0.03
390 96 0.18
391 196 0.37
392 96 0.18
393 16 0.03
394 2 0.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (388 bp):
TTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGAGGCATTTTCGTAATTATAATATGAA
GGCATAATAGTCAATTTGGATACATGGAATTTCTTATCATATAATGAAAATGGTATTTTGGTAAT
TTAATAGTGGATTATTTAGAAATAATTATAAGAAAAGGAGTATTTCGTAATTATGGTATGAAGGC
ATAATAGTTCATTTAACCACATGTCAATTTCTTATCATATAATTAAAAGGGATTTTAGTAATTTC
ATAAGAGATTATTTAGTAAATAATTATAAAAAAAAAGGATATTTTTCATAACTATGGCACGATAG
CATAATAATCCATTTAGCCACATGTCAATTTCTAATCATAAAATAAAAAGGGCATTTTCATAA
Found at i:15846995 original size:65 final size:63
Alignment explanation
Indices: 15846903--15847086 Score: 183
Period size: 65 Copynumber: 2.9 Consensus size: 63
15846893 ATCCCAAAAA
* * *
15846903 AATTAGAAGGGATTATTAAAGGCGTTTTTAGCTAAAAATGCCTTGAATAATCCCTTTTAATTTTT
1 AATT-GAAGGGATTATTCAAGGTGTTTTTAGCTAAAAATGCCTTGAATAATCCCTTTCAA-TTTT
* * ** * *
15846968 AATTGAAGGGGATTATTCAAGGTGTTTTTTGCTAGAAACACCTTGAATAACCCCATTCAATTTT
1 AATTGAA-GGGATTATTCAAGGTGTTTTTAGCTAAAAATGCCTTGAATAATCCCTTTCAATTTT
** * * *
15847032 --TTGTAAAAGATTATTCAAGATATTTTCTAGCCAAAAATGCCTTGAATAATCCCTT
1 AATTG-AAGGGATTATTCAAGGTGTTTT-TAGCTAAAAATGCCTTGAATAATCCCTT
15847087 AAAAAATGGA
Statistics
Matches: 96, Mismatches: 20, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
62 19 0.20
63 23 0.24
64 7 0.07
65 47 0.49
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (63 bp):
AATTGAAGGGATTATTCAAGGTGTTTTTAGCTAAAAATGCCTTGAATAATCCCTTTCAATTTT
Found at i:15849244 original size:28 final size:27
Alignment explanation
Indices: 15849212--15849304 Score: 118
Period size: 26 Copynumber: 3.4 Consensus size: 27
15849202 TTAGGATTTC
* *
15849212 ATTTTAGGTTTTCGACCTTAAAGGTTAG
1 ATTTAAGGTTTTCGACCTT-AAGGTTCG
* *
15849240 ATTTTAGGGTTTCGACCTTAAGGTTCG
1 ATTTAAGGTTTTCGACCTTAAGGTTCG
15849267 ATTTAAGGTTTT-GA-CTTAAGGTTTCG
1 ATTTAAGGTTTTCGACCTTAAGG-TTCG
15849293 ATTTAAGGTTTT
1 ATTTAAGGTTTT
15849305 GGATTGGGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
25 7 0.12
26 18 0.30
27 17 0.28
28 18 0.30
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.45
Consensus pattern (27 bp):
ATTTAAGGTTTTCGACCTTAAGGTTCG
Found at i:15849270 original size:27 final size:27
Alignment explanation
Indices: 15849212--15849296 Score: 102
Period size: 28 Copynumber: 3.1 Consensus size: 27
15849202 TTAGGATTTC
* *
15849212 ATTTTAGGTTTTCGACCTTAAAGGTTAG
1 ATTTTAGGGTTTCGACCTT-AAGGTTCG
15849240 ATTTTAGGGTTTCGACCTTAAGGTTCG
1 ATTTTAGGGTTTCGACCTTAAGGTTCG
* *
15849267 A-TTTAAGGTTTTGA-CTTAAGGTTTCG
1 ATTTTAGGGTTTCGACCTTAAGG-TTCG
15849293 ATTT
1 ATTT
15849297 AAGGTTTTGG
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
25 7 0.14
26 16 0.31
27 10 0.20
28 18 0.35
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.45
Consensus pattern (27 bp):
ATTTTAGGGTTTCGACCTTAAGGTTCG
Found at i:15849274 original size:12 final size:13
Alignment explanation
Indices: 15849242--15849303 Score: 72
Period size: 13 Copynumber: 4.8 Consensus size: 13
15849232 AAGGTTAGAT
*
15849242 TTTAGGGTTTCGA
1 TTTAAGGTTTCGA
*
15849255 CCTTAAGG-TTCGA
1 -TTTAAGGTTTCGA
*
15849268 TTTAAGGTTTTGA
1 TTTAAGGTTTCGA
*
15849281 CTTAAGGTTTCGA
1 TTTAAGGTTTCGA
15849294 TTTAAGGTTT
1 TTTAAGGTTT
15849304 TGGATTGGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
12 6 0.15
13 29 0.73
14 5 0.12
ACGTcount: A:0.21, C:0.10, G:0.24, T:0.45
Consensus pattern (13 bp):
TTTAAGGTTTCGA
Found at i:15852002 original size:18 final size:18
Alignment explanation
Indices: 15851979--15852019 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
15851969 AAACACCCTT
15851979 TTTTTGTTTTTTTATCCA
1 TTTTTGTTTTTTTATCCA
* *
15851997 TTTTTGTTTTTTTTTCTA
1 TTTTTGTTTTTTTATCCA
15852015 TTTTT
1 TTTTT
15852020 TTATTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.07, C:0.07, G:0.05, T:0.80
Consensus pattern (18 bp):
TTTTTGTTTTTTTATCCA
Found at i:15852008 original size:20 final size:19
Alignment explanation
Indices: 15851978--15852047 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
15851968 TAAACACCCT
*
15851978 TTTTTTGTTTTTTTATCCA
1 TTTTTTATTTTTTTATCCA
*
15851997 TTTTTGT-TTTTTTT-TCTA
1 TTTTT-TATTTTTTTATCCA
15852015 TTTTTTTATTTTTTTAT-C-
1 -TTTTTTATTTTTTTATCCA
15852033 TTTTATTATTTTTTT
1 TTTT-TTATTTTTTT
15852048 TTTATGGACG
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
17 4 0.09
18 14 0.32
19 24 0.55
20 2 0.05
ACGTcount: A:0.10, C:0.06, G:0.03, T:0.81
Consensus pattern (19 bp):
TTTTTTATTTTTTTATCCA
Found at i:15852026 original size:18 final size:18
Alignment explanation
Indices: 15851986--15852047 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
15851976 CTTTTTTTGT
*
15851986 TTTTTTATCCATTTTTGTT-
1 TTTTTT-TCTATTTTT-TTA
15852005 TTTTTTTCTATTTTTTTA
1 TTTTTTTCTATTTTTTTA
* * *
15852023 TTTTTTTATCTTTTATTA
1 TTTTTTTCTATTTTTTTA
15852041 TTTTTTT
1 TTTTTTT
15852048 TTTATGGACG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 2 0.05
18 30 0.79
19 6 0.16
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTTTTCTATTTTTTTA
Found at i:15852028 original size:8 final size:8
Alignment explanation
Indices: 15851996--15852047 Score: 59
Period size: 9 Copynumber: 6.0 Consensus size: 8
15851986 TTTTTTATCC
15851996 ATTTTTGTT
1 ATTTTT-TT
*
15852005 TTTTTTTCT
1 ATTTTTT-T
15852014 ATTTTTTT
1 ATTTTTTT
15852022 ATTTTTTT
1 ATTTTTTT
15852030 ATCTTTTATT
1 AT-TTTT-TT
15852040 ATTTTTTT
1 ATTTTTTT
15852048 TTTATGGACG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 14 0.37
9 20 0.53
10 4 0.11
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.83
Consensus pattern (8 bp):
ATTTTTTT
Found at i:15852028 original size:38 final size:38
Alignment explanation
Indices: 15851977--15852049 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
15851967 TTAAACACCC
* *
15851977 TTTTTTTGTTTTTTTATCCATTT-TTGTTTTTTTTTCTA
1 TTTTTTTATTTTTTTAT-CATTTATTATTTTTTTTTCTA
*
15852015 TTTTTTTATTTTTTTATCTTTTATTATTTTTTTTT
1 TTTTTTTATTTTTTTATCATTTATTATTTTTTTTT
15852050 TATGGACGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 4 0.13
38 27 0.87
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (38 bp):
TTTTTTTATTTTTTTATCATTTATTATTTTTTTTTCTA
Found at i:15852328 original size:18 final size:19
Alignment explanation
Indices: 15852282--15852331 Score: 77
Period size: 18 Copynumber: 2.7 Consensus size: 19
15852272 TTCACAAAAA
15852282 TTCAAGATTTGCAAGGATT
1 TTCAAGATTTGCAAGGATT
15852301 TTC-AGATTTGCAAGGA-T
1 TTCAAGATTTGCAAGGATT
*
15852318 TTCAAGTTTTGCAA
1 TTCAAGATTTGCAA
15852332 AAGTTCCAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 4 0.14
18 22 0.76
19 3 0.10
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (19 bp):
TTCAAGATTTGCAAGGATT
Found at i:15852351 original size:35 final size:35
Alignment explanation
Indices: 15852312--15852380 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
15852302 TCAGATTTGC
* *
15852312 AAGGATTTCAAGTTTTG-CAAAAGTTCCAGATTCAT
1 AAGGATTCCAAG-ATTGACAAAAGTTCCAGATTCAT
* *
15852347 AAGGATTCCAAGATTGACAAAGGTTTCAGATTCA
1 AAGGATTCCAAGATTGACAAAAGTTCCAGATTCA
15852381 CAAAAGTTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 3 0.10
35 26 0.90
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (35 bp):
AAGGATTCCAAGATTGACAAAAGTTCCAGATTCAT
Found at i:15852383 original size:17 final size:17
Alignment explanation
Indices: 15852357--15852408 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
15852347 AAGGATTCCA
*
15852357 AGATTGACAAAGGTTTC
1 AGATTCACAAAGGTTTC
* *
15852374 AGATTCACAAAAGTTCCC
1 AGATTCACAAAGGTT-TC
*
15852392 AAATTCAC-AAGGTTTC
1 AGATTCACAAAGGTTTC
15852408 A
1 A
15852409 AGTTTTGCAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 2 0.07
17 18 0.64
18 8 0.29
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (17 bp):
AGATTCACAAAGGTTTC
Found at i:15852494 original size:52 final size:52
Alignment explanation
Indices: 15852328--15852494 Score: 158
Period size: 52 Copynumber: 3.2 Consensus size: 52
15852318 TTCAAGTTTT
* * * * * *
15852328 GCAAAAG-TTCCAGATTCATAAGGATTCCAAG-ATTGACAAAGGTTTCAGATTC
1 GCAAAAGTTTCCAAATTCACAAGG-TTTCAAGTTTTG-CAAAGATTCCAGATTC
* * * *
15852380 ACAAAAGTTCCCAAATTCACAAGGTTTCAAGTTTTGCAAAGATTCCATATTT
1 GCAAAAGTTTCCAAATTCACAAGGTTTCAAGTTTTGCAAAGATTCCAGATTC
** * * * *
15852432 GCAAGGGTTTCTAAATTCACAAGGTTTCAAGTTTTGCAGAGGTTCTAGATTC
1 GCAAAAGTTTCCAAATTCACAAGGTTTCAAGTTTTGCAAAGATTCCAGATTC
15852484 GCAAAAGTTTC
1 GCAAAAGTTTC
15852495 AGATTTACAA
Statistics
Matches: 91, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
52 75 0.82
53 16 0.18
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (52 bp):
GCAAAAGTTTCCAAATTCACAAGGTTTCAAGTTTTGCAAAGATTCCAGATTC
Found at i:15852523 original size:17 final size:17
Alignment explanation
Indices: 15852501--15852540 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
15852491 TTTCAGATTT
15852501 ACAAGAATTACAAATTC
1 ACAAGAATTACAAATTC
** *
15852518 ACAAGAATTTTAGATTC
1 ACAAGAATTACAAATTC
15852535 ACAAGA
1 ACAAGA
15852541 TTTTCATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25
Consensus pattern (17 bp):
ACAAGAATTACAAATTC
Found at i:15854363 original size:16 final size:16
Alignment explanation
Indices: 15854342--15854374 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15854332 AGTGGATTAA
15854342 TACAGGAAATGTCTCT
1 TACAGGAAATGTCTCT
*
15854358 TACAGGAAATGTGTCT
1 TACAGGAAATGTCTCT
15854374 T
1 T
15854375 TCTTTTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (16 bp):
TACAGGAAATGTCTCT
Found at i:15854778 original size:3 final size:3
Alignment explanation
Indices: 15854772--15854797 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15854762 AATAATAATA
15854772 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
15854798 TTTAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:15861971 original size:80 final size:80
Alignment explanation
Indices: 15861845--15862051 Score: 283
Period size: 80 Copynumber: 2.6 Consensus size: 80
15861835 TTTGCATCAA
* * *
15861845 TTACATTTACATCATAAGAAAGACATTTGATTTGCATGTTGTAAAAACAAAAAGAGTCTTCACAG
1 TTACATGTGCATCATAAGAAAGACATTTGATTTGCATGTTGTAAAAACAAAAAGAGTCTTCAAAG
15861910 TCACATCATT-TGCGC
66 TCACATCATTGT-CGC
* * * *
15861925 TTATATGTGCATCATAAGAAAGACATTTGATTTGCATGTTGTAAAAACAAAACGAGTCTTTAAAT
1 TTACATGTGCATCATAAGAAAGACATTTGATTTGCATGTTGTAAAAACAAAAAGAGTCTTCAAAG
* *
15861990 TCGCATCATTGTCTC
66 TCACATCATTGTCGC
* *
15862005 TTACATGTGCATCATCAAGAAA-ACATTTAATCTGCATGTTGTAAAAA
1 TTACATGTGCATCAT-AAGAAAGACATTTGATTTGCATGTTGTAAAAA
15862052 TTAAAAAAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 106 0.94
81 7 0.06
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (80 bp):
TTACATGTGCATCATAAGAAAGACATTTGATTTGCATGTTGTAAAAACAAAAAGAGTCTTCAAAG
TCACATCATTGTCGC
Found at i:15862845 original size:108 final size:109
Alignment explanation
Indices: 15862728--15862934 Score: 238
Period size: 108 Copynumber: 1.9 Consensus size: 109
15862718 TCCAATCATC
** * * * *
15862728 TTTATCTTCTAGACTGTTGGTGTCATTTCGATCATTTTTATCTTTTCGACCATCGGTGTCATCCC
1 TTTATCTTCTAGACCATTGGTGTCATCTCGATCATCTTTATCTTTTCGACCATCGATGTCATACC
*
15862793 GATCATCTTT-TACTTCTTGATCATTAGTGTTGTCTTGGTCATTT
66 GATCATCTTTAT-CTTCTCGATCATTAGTGTTGTCTTGGTCATTT
* ** * * ** * *
15862837 TTTA-CTTCTTGACCATTGGTGTTGTCTCGGTTATCTTTATCTTTTTTACCATTGATGTCATATC
1 TTTATCTTCTAGACCATTGGTGTCATCTCGATCATCTTTATCTTTTCGACCATCGATGTCATACC
*
15862901 GATCATCTTTATCTTCTCGATCATTGGTGTTGTC
66 GATCATCTTTATCTTCTCGATCATTAGTGTTGTC
15862935 CAGGTCATCT
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
108 75 0.94
109 5 0.06
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.49
Consensus pattern (109 bp):
TTTATCTTCTAGACCATTGGTGTCATCTCGATCATCTTTATCTTTTCGACCATCGATGTCATACC
GATCATCTTTATCTTCTCGATCATTAGTGTTGTCTTGGTCATTT
Done.