Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 88 of 131
Found at i:15862943 original size:36 final size:36
Alignment explanation
Indices: 15862654--15863427 Score: 185
Period size: 36 Copynumber: 21.8 Consensus size: 36
15862644 GAAACTTTAT
* * *
15862654 TCTTTATCTTCTAGATCGTTGGTGTTGTCCTGATCA
1 TCTTTATCTTCTCGATCATTGGTGTTGTCCAGATCA
*
15862690 TCTTT-TACTT-TCTAATCATTGGTGTTGTTCCA-ATCA
1 TCTTTAT-CTTCTC-GATCATTGGTGTTG-TCCAGATCA
* * *
15862726 TCTTTATCTTCTAGA-CTGTTGGTGTCAT-TTC-GATCA
1 TCTTTATCTTCTCGATC-ATTGGTGT--TGTCCAGATCA
* * * * ** *
15862762 TTTTTATCTTTTCGACCATCGGTGTCATCCCGATCA
1 TCTTTATCTTCTCGATCATTGGTGTTGTCCAGATCA
* * ** *
15862798 TCTTT-TACTTCTTGATCATTAGTGTTGTCTTGGTCA
1 TCTTTAT-CTTCTCGATCATTGGTGTTGTCCAGATCA
* * * * *
15862834 T-TTTTTACTTCTTGACCATTGGTGTTGTCTC-GGTTA
1 TCTTTAT-CTTCTCGATCATTGGTGTTGTC-CAGATCA
* ** * * *
15862870 TCTTTATCTTTTTTACCATTGATGTCATAT-C-GATCA
1 TCTTTATCTTCTCGATCATTGGTGT--TGTCCAGATCA
*
15862906 TCTTTATCTTCTCGATCATTGGTGTTGTCCAGGTCA
1 TCTTTATCTTCTCGATCATTGGTGTTGTCCAGATCA
*
15862942 TC----T-TTCT-AATCATTGGTGTTGTCCCAG-TCA
1 TCTTTATCTTCTCGATCATTGGTGTTGT-CCAGATCA
* * *
15862972 TCTTTATCTT-TCCAACTGTTGGTGTTGTCTCA-ATCA
1 TCTTTATCTTCTCGATC-ATTGGTGTTGTC-CAGATCA
* * * *
15863008 -CTTCTATTTTC-CAATCATTGGTGTTGCCCCGATCA
1 TCTT-TATCTTCTCGATCATTGGTGTTGTCCAGATCA
* * *
15863043 TCTTTA-CTTTTTGA-CTATTTGTGTTGTCCCA-ATCA
1 TCTTTATCTTCTCGATC-ATTGGTGTTGT-CCAGATCA
* * * ** *
15863078 TCTTTAT-TTC-CAAACCGTTGGTGTCATCTC-GAACA
1 TCTTTATCTTCTC-GATCATTGGTGTTGTC-CAGATCA
* * * * *
15863113 TTTTTCTCTTCTCGACCATTGGTGTTAT-CATGGTCA
1 TCTTTATCTTCTCGATCATTGGTGTTGTCCA-GATCA
* * * * **
15863149 TCTTT-TACTTTTTGATCATTAGTCTCATCCTAG-TCA
1 TCTTTAT-CTTCTCGATCATTGGTGTTGTCC-AGATCA
* *
15863185 TCTTTAGCTT-TCAGATCATTGGGGTTGTCTCA-ATCA
1 TCTTTATCTTCTC-GATCATTGGTGTTGTC-CAGATCA
* * * * *
15863221 -CTTTTATCTTTTCAACCATTGATGTTATCCCAG-TCA
1 TC-TTTATCTTCTCGATCATTGGTGTTGT-CCAGATCA
* * *
15863257 TCTTTA-CCTCTCGA-CTGTTAGTGTTGTTCCA-ATCA
1 TCTTTATCTTCTCGATC-ATTGGTGTTG-TCCAGATCA
* * * **
15863292 TCTTTATTTTTTTGGCCATTGGTG-TGATCCCA-ATCA
1 TCTTTATCTTCTCGATCATTGGTGTTG-T-CCAGATCA
* * *
15863328 TCTTTATCTTTTCGATCATTGGGGTTGT-CATGGTC-
1 TCTTTATCTTCTCGATCATTGGTGTTGTCCA-GATCA
* * * ** *
15863363 GCTTTTATCTTCTCAACCATTGGTGTTGTCTTGGTCA
1 TC-TTTATCTTCTCGATCATTGGTGTTGTCCAGATCA
* * *
15863400 TTTTTACCTT-TTGATCATTGGTGTTGTC
1 TCTTTATCTTCTCGATCATTGGTGTTGTC
15863428 TTTGTCAACT
Statistics
Matches: 538, Mismatches: 130, Indels: 141
0.67 0.16 0.17
Matches are distributed among these distances:
30 19 0.04
31 8 0.01
32 1 0.00
34 13 0.02
35 118 0.22
36 354 0.66
37 21 0.04
38 4 0.01
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (36 bp):
TCTTTATCTTCTCGATCATTGGTGTTGTCCAGATCA
Found at i:15862945 original size:30 final size:30
Alignment explanation
Indices: 15862920--15862976 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
15862910 TATCTTCTCG
15862920 ATCATTGGTGTTGT-CCAGGTCATCTTTCTA
1 ATCATTGGTGTTGTCCCA-GTCATCTTTCTA
15862950 ATCATTGGTGTTGTCCCAGTCATCTTT
1 ATCATTGGTGTTGTCCCAGTCATCTTT
15862977 ATCTTTCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (30 bp):
ATCATTGGTGTTGTCCCAGTCATCTTTCTA
Found at i:15863029 original size:35 final size:36
Alignment explanation
Indices: 15862941--15863084 Score: 136
Period size: 35 Copynumber: 4.1 Consensus size: 36
15862931 TGTCCAGGTC
* *
15862941 ATCTTTCTAATCATTGGTGTTGTCCCAGTCATCTTT
1 ATCTTTCCAATCATTGGTGTTGTCCCAATCATCTTT
* *
15862977 ATCTTTCCAA-CTGTTGGTGTTGTCTCAATCA-CTTCT
1 ATCTTTCCAATC-ATTGGTGTTGTCCCAATCATCTT-T
* *
15863013 AT-TTTCCAATCATTGGTGTTGCCCCGATCATCTTT
1 ATCTTTCCAATCATTGGTGTTGTCCCAATCATCTTT
*** *
15863048 A-CTTTTTGA-CTATTTGTGTTGTCCCAATCATCTTT
1 ATCTTTCCAATC-ATTGGTGTTGTCCCAATCATCTTT
15863083 AT
1 AT
15863085 TTCCAAACCG
Statistics
Matches: 87, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
34 1 0.01
35 54 0.62
36 32 0.37
ACGTcount: A:0.17, C:0.23, G:0.13, T:0.47
Consensus pattern (36 bp):
ATCTTTCCAATCATTGGTGTTGTCCCAATCATCTTT
Found at i:15863426 original size:35 final size:35
Alignment explanation
Indices: 15863325--15863481 Score: 118
Period size: 36 Copynumber: 4.4 Consensus size: 35
15863315 GTGATCCCAA
* * *
15863325 TCATCTTTATCTTTTCGATCATTGGGGTTGTCATGG
1 TCATTTTTATCTTTT-GATCATTGGTGTTGTCTTGG
** ** *
15863361 TCGCTTTTATCTTCTCAACCATTGGTGTTGTCTTGG
1 TCATTTTTATCTT-TTGATCATTGGTGTTGTCTTGG
* *
15863397 TCATTTTTACCTTTTGATCATTGGTGTTGTCTTTG
1 TCATTTTTATCTTTTGATCATTGGTGTTGTCTTGG
** * * * * * *
15863432 TCAACTTTATGTTTTTAACTTATGGTGTTGTCTCGA
1 TCATTTTTATCTTTTGATCAT-TGGTGTTGTCTTGG
15863468 TCATTTTTAT-TTTT
1 TCATTTTTATCTTTT
15863482 CAACCTACAG
Statistics
Matches: 92, Mismatches: 27, Indels: 5
0.74 0.22 0.04
Matches are distributed among these distances:
35 36 0.39
36 55 0.60
37 1 0.01
ACGTcount: A:0.14, C:0.16, G:0.17, T:0.53
Consensus pattern (35 bp):
TCATTTTTATCTTTTGATCATTGGTGTTGTCTTGG
Found at i:15863441 original size:71 final size:72
Alignment explanation
Indices: 15863324--15863476 Score: 159
Period size: 71 Copynumber: 2.1 Consensus size: 72
15863314 TGTGATCCCA
* * *
15863324 ATCATCTTTATCTTTTCGATCATTGGGGTTGTCATGGTCGCTTTTATCTTCTCAACCAT-TGGTG
1 ATCATTTTTACCTTTTCGATCATTGGGGTTGTCATGGTCACTTTTATCTTCTCAA-CATATGGTG
*
15863388 TTGTCTTG
65 TTGTCTCG
* * * * * * * *
15863396 GTCATTTTTACCTTTT-GATCATTGGTGTTGTCTTTGTCAAC-TTTATGTTTTTAACTTATGGTG
1 ATCATTTTTACCTTTTCGATCATTGGGGTTGTCATGGTC-ACTTTTATCTTCTCAACATATGGTG
15863459 TTGTCTCG
65 TTGTCTCG
15863467 ATCATTTTTA
1 ATCATTTTTA
15863477 TTTTTCAACC
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
70 2 0.03
71 50 0.76
72 14 0.21
ACGTcount: A:0.15, C:0.16, G:0.18, T:0.51
Consensus pattern (72 bp):
ATCATTTTTACCTTTTCGATCATTGGGGTTGTCATGGTCACTTTTATCTTCTCAACATATGGTGT
TGTCTCG
Found at i:15863697 original size:36 final size:36
Alignment explanation
Indices: 15863567--15863835 Score: 147
Period size: 36 Copynumber: 7.5 Consensus size: 36
15863557 ACTGTTGGCA
*
15863567 TCATCCCTG-TCATTTTTATCTT-TTCGACCATTAGTG
1 TCATCCC-GATCATCTTTATCTTCTT-GACCATTAGTG
* * ** *
15863603 TCATCCCAATCATCTCTATCTTCTCAACCATTGGTG
1 TCATCCCGATCATCTTTATCTTCTTGACCATTAGTG
**
15863639 TCATTCTAGA-CATCTTTATCTTCTTGACCATTAGTG
1 TCA-TCCCGATCATCTTTATCTTCTTGACCATTAGTG
* * * * *
15863675 TCATCCCGATCATTTTTATCTTCCTAACCGTTGGTG
1 TCATCCCGATCATCTTTATCTTCTTGACCATTAGTG
* * * ** *
15863711 TTATCTCAATCATCTTT-TACTT-TCAAATCATTAGTG
1 TCATCCCGATCATCTTTAT-CTTCT-TGACCATTAGTG
** * * * *
15863747 TTGTTCTGATCATCTTTATCTTTCTT-ACCGTTGGTG
1 TCATCCCGATCATCTTTATC-TTCTTGACCATTAGTG
* * *
15863783 TCATCCCAATCATCTTTATCTT-TTCAACCATTGGTG
1 TCATCCCGATCATCTTTATCTTCTT-GACCATTAGTG
* **
15863819 TTATCTTGATCATCTTT
1 TCATCCCGATCATCTTT
15863836 TCAACTATTG
Statistics
Matches: 174, Mismatches: 48, Indels: 22
0.71 0.20 0.09
Matches are distributed among these distances:
34 2 0.01
35 7 0.04
36 157 0.90
37 7 0.04
38 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.45
Consensus pattern (36 bp):
TCATCCCGATCATCTTTATCTTCTTGACCATTAGTG
Found at i:15863721 original size:108 final size:108
Alignment explanation
Indices: 15863567--15863834 Score: 267
Period size: 108 Copynumber: 2.5 Consensus size: 108
15863557 ACTGTTGGCA
** * * * * * *
15863567 TCATCCCTGTCATTTTTATCTTTTCGACCATTAGTGTCATCCCAATCATCTCTAT-CTTCTC-AA
1 TCATCCCAATCATCTTTATCTTCTCAACCATTGGTGTTATCTCAATCATCT-TATACTT-TCAAA
*
15863630 CCATTGGTGTCATTCTAGA-CATCTTTATC-TTCTTGACCATTAGTG
64 CCATTAGTGTCATTCT-GATCATCTTTATCTTTCTT-ACCATTAGTG
* * * * *
15863675 TCATCCCGATCATTTTTATCTTC-CTAACCGTTGGTGTTATCTCAATCATCTTTTACTTTCAAAT
1 TCATCCCAATCATCTTTATCTTCTC-AACCATTGGTGTTATCTCAATCATCTTATACTTTCAAAC
** * *
15863739 CATTAGTGTTGTTCTGATCATCTTTATCTTTCTTACCGTTGGTG
65 CATTAGTGTCATTCTGATCATCTTTATCTTTCTTACCATTAGTG
* **
15863783 TCATCCCAATCATCTTTATCTTTTCAACCATTGGTGTTATCTTGATCATCTT
1 TCATCCCAATCATCTTTATCTTCTCAACCATTGGTGTTATCTCAATCATCTT
15863835 TTCAACTATT
Statistics
Matches: 133, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
107 7 0.05
108 120 0.90
109 6 0.05
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.45
Consensus pattern (108 bp):
TCATCCCAATCATCTTTATCTTCTCAACCATTGGTGTTATCTCAATCATCTTATACTTTCAAACC
ATTAGTGTCATTCTGATCATCTTTATCTTTCTTACCATTAGTG
Found at i:15863725 original size:72 final size:70
Alignment explanation
Indices: 15863576--15863835 Score: 229
Period size: 72 Copynumber: 3.6 Consensus size: 70
15863566 ATCATCCCTG
* * * *
15863576 TCATTTTTATCTTTTCGACCATTAGTGTCATCCCAATCATCTCTATCTTCTCAACCATTGGTGTC
1 TCATCTTTATCTTTT-GACCATTAGTGTCATCCCGATCATCTTTATCTTCT-AACCGTTGGTGTC
15863641 AT-TCTAGA
64 ATCTC-A-A
* *
15863649 -CATCTTTATCTTCTTGACCATTAGTGTCATCCCGATCATTTTTATCTTCCTAACCGTTGGTGTT
1 TCATCTTTATCTT-TTGACCATTAGTGTCATCCCGATCATCTTTATCTT-CTAACCGTTGGTGTC
15863713 ATCTCAA
64 ATCTCAA
** * ** * * *
15863720 TCATCTTT-TACTTTCAAATCATTAGTGTTGTTCTGATCATCTTTATCTTTCTTACCGTTGGTGT
1 TCATCTTTAT-CTTT-TGACCATTAGTGTCATCCCGATCATCTTTATC-TTCTAACCGTTGGTGT
*
15863784 CATCCCAA
63 CATCTCAA
* * * **
15863792 TCATCTTTATCTTTTCAACCATTGGTGTTATCTTGATCATCTTT
1 TCATCTTTATCTTTT-GACCATTAGTGTCATCCCGATCATCTTT
15863836 TCAACTATTG
Statistics
Matches: 155, Mismatches: 23, Indels: 19
0.79 0.12 0.10
Matches are distributed among these distances:
71 3 0.02
72 143 0.92
73 9 0.06
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.46
Consensus pattern (70 bp):
TCATCTTTATCTTTTGACCATTAGTGTCATCCCGATCATCTTTATCTTCTAACCGTTGGTGTCAT
CTCAA
Found at i:15863977 original size:36 final size:36
Alignment explanation
Indices: 15863927--15864011 Score: 95
Period size: 36 Copynumber: 2.4 Consensus size: 36
15863917 TATTATCCCG
* *
15863927 ATCATCTTTA-CTTCTTGACCT-TTGGTGTCGTCCTA
1 ATCATTTTTATCTTCTCGA-CTGTTGGTGTCGTCCTA
* *
15863962 ATCATTTTTATCTTCTCGACTGTTGGTGTTGTCCTG
1 ATCATTTTTATCTTCTCGACTGTTGGTGTCGTCCTA
*
15863998 ATCA-TCTTATCTTC
1 ATCATTTTTATCTTC
15864012 CTAATCATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
35 20 0.47
36 23 0.53
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.48
Consensus pattern (36 bp):
ATCATTTTTATCTTCTCGACTGTTGGTGTCGTCCTA
Found at i:15864054 original size:35 final size:35
Alignment explanation
Indices: 15863988--15864055 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
15863978 CGACTGTTGG
*
15863988 TGTTGTCCTGATCATCTTATCTTCCTAATCATTAA
1 TGTTGTCCTGATCATCTTATCTTCATAATCATTAA
* * *
15864023 TGTTGT-CTCGATCATTTTATCTTTATGATCATT
1 TGTTGTCCT-GATCATCTTATCTTCATAATCATT
15864056 GGTATTGTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 2 0.07
35 26 0.93
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (35 bp):
TGTTGTCCTGATCATCTTATCTTCATAATCATTAA
Found at i:15864184 original size:36 final size:36
Alignment explanation
Indices: 15864145--15864261 Score: 130
Period size: 36 Copynumber: 3.3 Consensus size: 36
15864135 TTAGGTCACT
* * * *
15864145 TTTATGTTCTCAATTGTTGGTGTTGTTCTAGTCATT
1 TTTATCTTCTCAACTGTTGGTGTTGTTCTAATCATC
* *
15864181 TTTACCTT-TCAACTATTGGTGTTG-TCTTAATCATC
1 TTTATCTTCTCAACTGTTGGTGTTGTTC-TAATCATC
* * *
15864216 TTTATTTTTTCAACTGTTGGTGTTGTCCTAATCATC
1 TTTATCTTCTCAACTGTTGGTGTTGTTCTAATCATC
15864252 TTTATCTTCT
1 TTTATCTTCT
15864262 TGACAATTAG
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
34 2 0.03
35 26 0.39
36 37 0.56
37 1 0.02
ACGTcount: A:0.16, C:0.16, G:0.14, T:0.54
Consensus pattern (36 bp):
TTTATCTTCTCAACTGTTGGTGTTGTTCTAATCATC
Found at i:15864253 original size:143 final size:143
Alignment explanation
Indices: 15864088--15864368 Score: 320
Period size: 143 Copynumber: 2.0 Consensus size: 143
15864078 ATTCCCGATC
* * ** *
15864088 GTTGGGGTTGCCTCAATCATCTTTGTCTTCCTGATC-ATTGGGGTTGT-TTAGGTCACTTTTAT-
1 GTTGGGGTTGCCTCAATCATCTTTATCTTCCTGA-CAATTAGGGTTGTCCCA-ATCACTTTTATC
* *** * * * * *
15864150 GTTCTCAATTGTTGGTGTTGTTCTAGTCATTTTTACCTT-TCAACTATTGGTGTTGTCTTAATCA
64 ATT-TCAACCATTGGTATTATTCTAGTCATTTTTACCTTCT-AACCATTGGTATTGTCCTAATCA
15864214 TCTTTATTTTTTCAACT
127 TCTTTATTTTTTCAACT
* *
15864231 GTTGGTGTTGTCCT-AATCATCTTTATCTTCTTGACAATTAGGGTTGTCCCAATCACTTTTATCA
1 GTTGGGGTTG-CCTCAATCATCTTTATCTTCCTGACAATTAGGGTTGTCCCAATCACTTTTATCA
* *
15864295 TTTCAACCATTGGTATTATTCTAGTCATTTTTACCTTCTGACCATTGGTATTGTCCTAGTCATCT
65 TTTCAACCATTGGTATTATTCTAGTCATTTTTACCTTCTAACCATTGGTATTGTCCTAATCATCT
15864360 TTATTTTTT
130 TTATTTTTT
15864369 TGACCTGCGG
Statistics
Matches: 115, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
142 1 0.01
143 107 0.93
144 7 0.06
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (143 bp):
GTTGGGGTTGCCTCAATCATCTTTATCTTCCTGACAATTAGGGTTGTCCCAATCACTTTTATCAT
TTCAACCATTGGTATTATTCTAGTCATTTTTACCTTCTAACCATTGGTATTGTCCTAATCATCTT
TATTTTTTCAACT
Found at i:15864292 original size:72 final size:71
Alignment explanation
Indices: 15864140--15864301 Score: 157
Period size: 71 Copynumber: 2.3 Consensus size: 71
15864130 GTTGTTTAGG
* * * * * * *
15864140 TCACTTTTATGTTCTCAATTGTTGGTGTTGTTCTAGTCATTTTTACCTTTCAACTATTGGTGTTG
1 TCACTTTTATCTTTTCAACTGTTGGTGTTGTCCTAATCATCTTTACCTTTCAACAATTGGTGTTG
**
15864205 TCTTAA
66 TCCCAA
* * **
15864211 TCA-TCTTTATTTTTTCAACTGTTGGTGTTGTCCTAATCATCTTTATCTTCTTGACAATTAGG-G
1 TCACT-TTTATCTTTTCAACTGTTGGTGTTGTCCTAATCATCTTTACCTT-TCAACAATT-GGTG
15864274 TTGTCCCAA
63 TTGTCCCAA
*
15864283 TCACTTTTATCATTTCAAC
1 TCACTTTTATCTTTTCAAC
15864302 CATTGGTATT
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
70 1 0.01
71 40 0.55
72 29 0.40
73 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (71 bp):
TCACTTTTATCTTTTCAACTGTTGGTGTTGTCCTAATCATCTTTACCTTTCAACAATTGGTGTTG
TCCCAA
Found at i:15864892 original size:35 final size:34
Alignment explanation
Indices: 15864853--15864959 Score: 99
Period size: 34 Copynumber: 3.1 Consensus size: 34
15864843 TATTGATTAT
* *
15864853 TTTTACCTCTTGACCACTGGTGTTATCTCAGTCA
1 TTTTACCTCTTGACCATTGGTGTTATCTCAATCA
* ** *
15864887 CTTTTATCT-TTGACTGTTGGTGTTATCCCAATCA
1 -TTTTACCTCTTGACCATTGGTGTTATCTCAATCA
* * * *
15864921 TCTTTACTTCCTGACCATTGGTGCTATCTCGATCA
1 T-TTTACCTCTTGACCATTGGTGTTATCTCAATCA
15864956 TTTT
1 TTTT
15864960 TATTTTTTTA
Statistics
Matches: 56, Mismatches: 14, Indels: 5
0.75 0.19 0.07
Matches are distributed among these distances:
33 1 0.02
34 28 0.50
35 27 0.48
ACGTcount: A:0.17, C:0.24, G:0.14, T:0.45
Consensus pattern (34 bp):
TTTTACCTCTTGACCATTGGTGTTATCTCAATCA
Found at i:15865126 original size:36 final size:36
Alignment explanation
Indices: 15865085--15865217 Score: 119
Period size: 36 Copynumber: 3.7 Consensus size: 36
15865075 CGACCGTTGG
*
15865085 TGTTGTCCTAGTCTTCTTTATTTTTTTGACCTATGA
1 TGTTGTCCTAGTCATCTTTATTTTTTTGACCTATGA
* * * * *
15865121 TGTTGTCCTGGTCATATTTCTTTTCTTGACCGT-TGG
1 TGTTGTCCTAGTCATCTTTATTTTTTTGACC-TATGA
* * * *
15865157 TGTTGT-TTCGATTATCTTTATTTTTTTGACCTATAA
1 TGTTGTCCTAG-TCATCTTTATTTTTTTGACCTATGA
*
15865193 TGTTGTCCCTA-TAATCTTTATTTTT
1 TGTTGT-CCTAGTCATCTTTATTTTT
15865218 CTAACTTGCA
Statistics
Matches: 75, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
35 3 0.04
36 70 0.93
37 1 0.01
38 1 0.01
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.56
Consensus pattern (36 bp):
TGTTGTCCTAGTCATCTTTATTTTTTTGACCTATGA
Found at i:15865268 original size:35 final size:35
Alignment explanation
Indices: 15865156--15865360 Score: 117
Period size: 36 Copynumber: 5.7 Consensus size: 35
15865146 TTGACCGTTG
* * * * * *
15865156 GTGTTGTTTCGATTATCTTTATTTTTTTGACCTATA
1 GTGTTGTCTCGATCATCTTTA-TTTTCTAACTTGTA
* * * * *
15865192 ATGTTGTCCCTATAATCTTTATTTTTCTAACTTGCA
1 GTGTTGTCTCGATCATCTTTA-TTTTCTAACTTGTA
* *
15865228 ATGTTGTCTCGATCATCTTTATTTTCTAACTTGTG
1 GTGTTGTCTCGATCATCTTTATTTTCTAACTTGTA
* * * * * * *
15865263 GTGTTGTC-CTGATCATATTTGTTTTTTAGCCTATT
1 GTGTTGTCTC-GATCATCTTTATTTTCTAACTTGTA
* *
15865298 GTGTTGTCTC-AGTCATTTTTATTTTTCCAACTTGTA
1 GTGTTGTCTCGA-TCATCTTTA-TTTTCTAACTTGTA
* * *
15865334 GTGATGTCCCGATCGTTCTTTATTTTC
1 GTGTTGTCTCGATC-ATCTTTATTTTC
15865361 CAAAAAAAAG
Statistics
Matches: 128, Mismatches: 35, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
34 2 0.02
35 52 0.41
36 68 0.53
37 6 0.05
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.53
Consensus pattern (35 bp):
GTGTTGTCTCGATCATCTTTATTTTCTAACTTGTA
Found at i:15865389 original size:9 final size:8
Alignment explanation
Indices: 15865377--15865433 Score: 57
Period size: 9 Copynumber: 7.1 Consensus size: 8
15865367 AAAGAAAAAG
15865377 AAAACAAA
1 AAAACAAA
15865385 CAAAACAAA
1 -AAAACAAA
15865394 AACAACAAA
1 AA-AACAAA
15865403 ACAAAC--A
1 A-AAACAAA
15865410 AAAACAAA
1 AAAACAAA
*
15865418 AAAGCAAA
1 AAAACAAA
15865426 AAAA-AAA
1 AAAACAAA
15865433 A
1 A
15865434 GACGAGGAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
6 4 0.10
7 6 0.14
8 13 0.31
9 18 0.43
10 1 0.02
ACGTcount: A:0.82, C:0.16, G:0.02, T:0.00
Consensus pattern (8 bp):
AAAACAAA
Found at i:15865389 original size:15 final size:14
Alignment explanation
Indices: 15865377--15865418 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
15865367 AAAGAAAAAG
15865377 AAAACAAACAAAACA
1 AAAAC-AACAAAACA
15865392 AAAACAACAAAACA
1 AAAACAACAAAACA
*
15865406 AACAAAAACAAAA
1 AA-AACAACAAAA
15865419 AAGCAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAACAACAAAACA
Found at i:15865402 original size:18 final size:18
Alignment explanation
Indices: 15865379--15865431 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
15865369 AGAAAAAGAA
15865379 AACAAACAAAACAAAAAC
1 AACAAACAAAACAAAAAC
15865397 AACAAA-ACAAACAAAAAC
1 AACAAACA-AAACAAAAAC
*
15865415 AAAAAAGCAAAA-AAAAA
1 AACAAA-CAAAACAAAAA
15865432 AAGACGAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 1 0.03
18 26 0.84
19 3 0.10
20 1 0.03
ACGTcount: A:0.81, C:0.17, G:0.02, T:0.00
Consensus pattern (18 bp):
AACAAACAAAACAAAAAC
Found at i:15865425 original size:14 final size:14
Alignment explanation
Indices: 15865397--15865434 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
15865387 AAACAAAAAC
*
15865397 AACAAAACAAACAAA
1 AACAAAA-AAGCAAA
15865412 AACAAAAAAGCAAA
1 AACAAAAAAGCAAA
15865426 AA-AAAAAAG
1 AACAAAAAAG
15865435 ACGAGGAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 7 0.32
14 8 0.36
15 7 0.32
ACGTcount: A:0.82, C:0.13, G:0.05, T:0.00
Consensus pattern (14 bp):
AACAAAAAAGCAAA
Found at i:15866123 original size:144 final size:142
Alignment explanation
Indices: 15865886--15866171 Score: 407
Period size: 144 Copynumber: 2.0 Consensus size: 142
15865876 TACTAAAAAA
*
15865886 TTTTATTGCACTTAGGGAATTACAAAATACTAAAATGCCCTTTAGGGCTATTTTCATAATCTAAC
1 TTTTATTGCACTTAGGGAATTACAAAATACTAAAATGCCCTTTAGGGCTATTTGCATAATCTAAC
** *
15865951 CTTCTTGAGCTCTAATTTTTATGAAACTTTATAGATCTTAATTTCATAATATTTCATGATTTTTG
66 CTTCCCGAGCTCTAATTTTCATGAAACTTTATAGATCTTAATTTCATAATATTTCAT-ATTTTTG
15866016 GTGG-ATTTGAAAT
130 G-GGCATTTGAAAT
* * *
15866029 TTTTATTGCACTTAGGGAATTATAAAATTACTAAAATGCCTTTTAAGGG-TATTTGCATAATTTA
1 TTTTATTGCACTTAGGGAATTACAAAA-TACTAAAATGCCCTTT-AGGGCTATTTGCATAATCTA
* * * *
15866093 GCCTTCCCGAGCT-TGGATTTTCATGAAACTTTCTAGGTCTTAATTTCATAATATTTCATATTTT
64 ACCTTCCCGAGCTCT-AATTTTCATGAAACTTTATAGATCTTAATTTCATAATATTTCATATTTT
15866157 TGGGGCATTTGAAAT
128 TGGGGCATTTGAAAT
15866172 CATAGTAGTA
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
142 2 0.02
143 44 0.34
144 78 0.61
145 4 0.03
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (142 bp):
TTTTATTGCACTTAGGGAATTACAAAATACTAAAATGCCCTTTAGGGCTATTTGCATAATCTAAC
CTTCCCGAGCTCTAATTTTCATGAAACTTTATAGATCTTAATTTCATAATATTTCATATTTTTGG
GGCATTTGAAAT
Found at i:15868934 original size:21 final size:21
Alignment explanation
Indices: 15868895--15868934 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15868885 CTTACTTTAA
*
15868895 AAATTTCAAGGTTTCACATCC
1 AAATTTCAAGATTTCACATCC
15868916 AAATTTCAAAGATTT-ACAT
1 AAATTTC-AAGATTTCACAT
15868935 ATAAAAGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.35
Consensus pattern (21 bp):
AAATTTCAAGATTTCACATCC
Found at i:15870286 original size:10 final size:10
Alignment explanation
Indices: 15870255--15870298 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
15870245 TATCAATTTC
*
15870255 TTCTATTTTT
1 TTCTTTTTTT
*
15870265 TGCTTTTTTT
1 TTCTTTTTTT
15870275 TTCTTTTTTTT
1 TTC-TTTTTTT
15870286 TTCCTTTTTTT
1 TT-CTTTTTTT
15870297 TT
1 TT
15870299 TGCACCTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 10 0.34
11 18 0.62
12 1 0.03
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.84
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:15870307 original size:15 final size:12
Alignment explanation
Indices: 15870268--15870299 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
15870258 TATTTTTTGC
15870268 TTTTTTTTT-CT
1 TTTTTTTTTCCT
15870279 TTTTTTTTTCCT
1 TTTTTTTTTCCT
15870291 TTTTTTTTT
1 TTTTTTTTT
15870300 GCACCTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (12 bp):
TTTTTTTTTCCT
Found at i:15870462 original size:293 final size:298
Alignment explanation
Indices: 15870146--15870731 Score: 773
Period size: 293 Copynumber: 2.0 Consensus size: 298
15870136 AGTTAAAATA
* * *
15870146 GTTATGAAAGAAATGGATAAAATAAGCTTACACTATATTTGAAGGGTAGTCAAAACCAATGATCA
1 GTTATGAAAGAAATGGATAAAATAAGCTCAAACTATATTTGAAGGGTAGTCAAAACCAAGGATCA
*
15870211 TCT-TTTTCTGTGTT-GAGCACCT-TTACATTTAC-CTTATCAATTTC-TTCTAT-TTTTTGCTT
66 TCTATTTTC-GTGTTAG-GC-CCTATCA-ATTT-CTCTTATCAATTTCTTTCTATCTTTTTGCTT
*
15870270 TTTTTTTCTTTTT-TTTTTCCTTTTTTTTTTGCACCTTTCATCATTTTTCAAAAAAATTTAAGTA
126 TTGTTTTCTTTTTCTTTTT-CTTTTTTTTTTGCACCTTTCATCATTTTTCAAAAAAATTTAAGTA
*
15870334 CAAAATGAC-TCACCCCTCAAATCACTATA-GAGCTTCACTTTTCTTTTT-GT-A-AACCCTTCT
190 CAAAAGGACTTCACCCCTCAAATCACTA-AGGAGCTTCACTTTTCTTTTTAGTAACAACCCTTCT
* *
15870394 CAAACTTTGCCTTAATGTGGGGTGATCCTTAGCTAGGGTAAAAGG
254 CAAACTTTGCCGTAATGTAGGGTGATCCTTAGCTAGGGTAAAAGG
15870439 GTTATGAAAGAAATGGATAAAATAAGCTCAAACTATATTTGAAGGGTAGTCAAAACCAAGGATCA
1 GTTATGAAAGAAATGGATAAAATAAGCTCAAACTATATTTGAAGGGTAGTCAAAACCAAGGATCA
* * *** * *
15870504 TCTATTTTCGTGTTAGGCCCTATCAATTTCTTTTTTTTTTTTTCTTTCTTTCTTTTTTCTTTTGT
66 TCTATTTTCGTGTTAGGCCCTATCAATTTC-TCTTATCAATTTCTTTCTATCTTTTTGCTTTTGT
* * *
15870569 TTTCTTTTTCTTTTTTTTTTTTTTTTGCACCTTTCATCATTTTTCAAAAAGATTTGAGTACAAAA
130 TTTCTTTTTCTTTTTCTTTTTTTTTTGCACCTTTCATCATTTTTCAAAAAAATTTAAGTACAAAA
** * * * **
15870634 GGACTTTGCCCCTCAAATCACTAAGGATCTTCATTTTTCTTTTTATTAACAATGCTTCTCAAACT
195 GGACTTCACCCCTCAAATCACTAAGGAGCTTCACTTTTCTTTTTAGTAACAACCCTTCTCAAACT
* *
15870699 TTGCCGTAATGTAGGGTGATCCTTGGTTAGGGT
260 TTGCCGTAATGTAGGGTGATCCTTAGCTAGGGT
15870732 TCATAAAAGA
Statistics
Matches: 253, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
291 1 0.00
292 7 0.03
293 81 0.32
294 11 0.04
295 71 0.28
296 38 0.15
297 1 0.00
298 1 0.00
299 42 0.17
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (298 bp):
GTTATGAAAGAAATGGATAAAATAAGCTCAAACTATATTTGAAGGGTAGTCAAAACCAAGGATCA
TCTATTTTCGTGTTAGGCCCTATCAATTTCTCTTATCAATTTCTTTCTATCTTTTTGCTTTTGTT
TTCTTTTTCTTTTTCTTTTTTTTTTGCACCTTTCATCATTTTTCAAAAAAATTTAAGTACAAAAG
GACTTCACCCCTCAAATCACTAAGGAGCTTCACTTTTCTTTTTAGTAACAACCCTTCTCAAACTT
TGCCGTAATGTAGGGTGATCCTTAGCTAGGGTAAAAGG
Found at i:15870612 original size:1 final size:1
Alignment explanation
Indices: 15870534--15870594 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
15870524 TATCAATTTC
* * * * * * *
15870534 TTTTTTTTTTTTTCTTTCTTTCTTTTTTCTTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15870595 GCACCTTTCA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.00, C:0.10, G:0.02, T:0.89
Consensus pattern (1 bp):
T
Found at i:15878988 original size:25 final size:25
Alignment explanation
Indices: 15878917--15878989 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 25
15878907 ACCATTCGAT
* * *
15878917 AGCTTCCTTCTTTCTCCATTTCAGT
1 AGCTTCCTCCTTTCTCCATTTTAGC
* * *
15878942 AGCTTTCTCCCTTT-TCCTTTTTGGC
1 AGCTTCCT-CCTTTCTCCATTTTAGC
*
15878967 AGCTTCCTCCTTTCTCCCTTTTA
1 AGCTTCCTCCTTTCTCCATTTTA
15878990 ATGGACTCTC
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
24 5 0.14
25 28 0.76
26 4 0.11
ACGTcount: A:0.08, C:0.34, G:0.08, T:0.49
Consensus pattern (25 bp):
AGCTTCCTCCTTTCTCCATTTTAGC
Found at i:15880284 original size:37 final size:37
Alignment explanation
Indices: 15880182--15880382 Score: 165
Period size: 37 Copynumber: 5.4 Consensus size: 37
15880172 TAACAAAGAT
* * * * *
15880182 TTTGAAACTTTGAAAATAGCTTCTCCTCAATAAAGGC
1 TTTGAAACTTTGAAAATGGCTCCCCCTAAATAGAGGC
* * ** *
15880219 TCTGAAACTTTGAAAATAGCTCATCCTAAATAGAGAC
1 TTTGAAACTTTGAAAATGGCTCCCCCTAAATAGAGGC
* ** *
15880256 TTTGAAACTTTGAAGATGGCTCCCCCTAAGCAAAGGC
1 TTTGAAACTTTGAAAATGGCTCCCCCTAAATAGAGGC
** * *
15880293 TTCAAAACTTT-AAAATTGG-TTCCCCTCAAATAGAGGT
1 TTTGAAACTTTGAAAA-TGGCTCCCCCT-AAATAGAGGC
* *
15880330 TTTGAATCTTTGAAAATGGCT-CCCCTCAAACAGAGGC
1 TTTGAAACTTTGAAAATGGCTCCCCCT-AAATAGAGGC
*
15880367 TTTGAAACTTTAAAAA
1 TTTGAAACTTTGAAAA
15880383 AAAATTTTTT
Statistics
Matches: 130, Mismatches: 30, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
36 9 0.07
37 116 0.89
38 5 0.04
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (37 bp):
TTTGAAACTTTGAAAATGGCTCCCCCTAAATAGAGGC
Found at i:15880418 original size:9 final size:10
Alignment explanation
Indices: 15880399--15880423 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15880389 TTTTGTTGTG
15880399 TTTTTATTTT
1 TTTTTATTTT
15880409 TTTTTATTTT
1 TTTTTATTTT
15880419 TTTTT
1 TTTTT
15880424 GTGAATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTATTTT
Found at i:15880901 original size:105 final size:104
Alignment explanation
Indices: 15880625--15880910 Score: 349
Period size: 105 Copynumber: 2.7 Consensus size: 104
15880615 GATCTTATAT
* * * * **
15880625 ATCTTTGAATGCTCCTCGTAATAGAGTTGTTAAAACTTTAACAATTTAAAATGTTTTGCACAAAG
1 ATCTTTGAATGCT-CTCATAATAGAGGTGTTGAAACTTTAAAAATTTAAAATGTTTTGCACTGAG
* *
15880690 GTCTTAGAAATTATACCCGGAGGTCTTACAGATCTAAAAA
65 GTCTTAGAAATTATACCCAGAGATCTTACAGATCTAAAAA
* * *
15880730 ATCTTTGAAGGCTTCTCCTAATAGAGGTGTTGAAACTTTAAAAATTTAAAATGTTTTG-GCTGGA
1 ATCTTTGAATGC-TCTCATAATAGAGGTGTTGAAACTTTAAAAATTTAAAATGTTTTGCACT-GA
* * ** * *
15880794 GGTCTTGGAAATTATGCTTAGAGATTTTATAGATCTAAAAA
64 GGTCTTAGAAATTATACCCAGAGATCTTACAGATCTAAAAA
* *
15880835 ATCTTTGAATGCTCATCATAATAAAGGTGTTGAAACTTTAAAAATTTAAAATGTTTTGCCCTGAG
1 ATCTTTGAATGCTC-TCATAATAGAGGTGTTGAAACTTTAAAAATTTAAAATGTTTTGCACTGAG
*
15880900 GTCTTACAAAT
65 GTCTTAGAAAT
15880911 CTAAAAAATC
Statistics
Matches: 155, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
104 3 0.02
105 149 0.96
106 3 0.02
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.36
Consensus pattern (104 bp):
ATCTTTGAATGCTCTCATAATAGAGGTGTTGAAACTTTAAAAATTTAAAATGTTTTGCACTGAGG
TCTTAGAAATTATACCCAGAGATCTTACAGATCTAAAAA
Found at i:15881080 original size:41 final size:41
Alignment explanation
Indices: 15881008--15881085 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
15880998 TGAAACTCTA
* *
15881008 AAAATCTTGTTTGAAAATGGCTCCTTCTAAACAGAGGCTTC
1 AAAATCTTATTTGAAAATGGCTCCCTCTAAACAGAGGCTTC
* *
15881049 AAAATCTTATTTGAAAATTGTTCCC-CTTAAACAGAGG
1 AAAATCTTATTTGAAAATGGCTCCCTC-TAAACAGAGG
15881086 TTTTGAAACT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.03
41 31 0.97
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (41 bp):
AAAATCTTATTTGAAAATGGCTCCCTCTAAACAGAGGCTTC
Found at i:15881543 original size:22 final size:22
Alignment explanation
Indices: 15881517--15881563 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
15881507 TTTTTTTATG
*
15881517 TTTTTGTTTGTGTTTTTATTTTC
1 TTTTTGTTT-TGTTGTTATTTTC
*
15881540 TTTTTGTTTTGTTGTTGTTTTC
1 TTTTTGTTTTGTTGTTATTTTC
15881562 TT
1 TT
15881564 GTTTTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.02, C:0.04, G:0.15, T:0.79
Consensus pattern (22 bp):
TTTTTGTTTTGTTGTTATTTTC
Found at i:15882435 original size:15 final size:15
Alignment explanation
Indices: 15882415--15882453 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
15882405 TTGGACCCAT
*
15882415 TCTACTTCTTCTAAA
1 TCTACTTCCTCTAAA
15882430 TCTACTTCCTCTAAA
1 TCTACTTCCTCTAAA
15882445 TCTACTTCC
1 TCTACTTCC
15882454 ATTAGGATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.23, C:0.33, G:0.00, T:0.44
Consensus pattern (15 bp):
TCTACTTCCTCTAAA
Found at i:15882656 original size:14 final size:15
Alignment explanation
Indices: 15882627--15882657 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15882617 ATTAGGACTG
15882627 TAAATGAACTAAACA
1 TAAATGAACTAAACA
15882642 TAAATGAAC-AAACA
1 TAAATGAACTAAACA
15882656 TA
1 TA
15882658 TGTTCATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (15 bp):
TAAATGAACTAAACA
Found at i:15883034 original size:75 final size:75
Alignment explanation
Indices: 15882928--15883080 Score: 288
Period size: 75 Copynumber: 2.0 Consensus size: 75
15882918 CCGGTATTCA
* *
15882928 TATTCACTTATTTGATTAGGGGGAATCCACATATATTAAATCTTGAATAAGTACTATAATTTTCT
1 TATTCACTTATTTGATTAAGGGGAATCCACATATATTAAATCTTGAAAAAGTACTATAATTTTCT
15882993 TTGCATATAT
66 TTGCATATAT
15883003 TATTCACTTATTTGATTAAGGGGAATCCACATATATTAAATCTTGAAAAAGTACTATAATTTTCT
1 TATTCACTTATTTGATTAAGGGGAATCCACATATATTAAATCTTGAAAAAGTACTATAATTTTCT
15883068 TTGCATATAT
66 TTGCATATAT
15883078 TAT
1 TAT
15883081 GGTAATTCAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (75 bp):
TATTCACTTATTTGATTAAGGGGAATCCACATATATTAAATCTTGAAAAAGTACTATAATTTTCT
TTGCATATAT
Found at i:15883141 original size:77 final size:77
Alignment explanation
Indices: 15883030--15883183 Score: 229
Period size: 77 Copynumber: 2.0 Consensus size: 77
15883020 AAGGGGAATC
* * *
15883030 CACATATATTAAATCTTGAAAAAGTACTATAATTTTCTT-TGCATATATTATGGTAATTCAAATA
1 CACATATACTAAATCTTGAAAAAGTACTATAATTTCCTTGT-CATATATGATGGTAATTCAAATA
15883094 ACCCCATTCAATT
65 ACCCCATTCAATT
* * *
15883107 CACATATACTAAATCTTGAATAATTACTATAATTTCCTTGTCATATATGATGGTAATTTAAATAA
1 CACATATACTAAATCTTGAAAAAGTACTATAATTTCCTTGTCATATATGATGGTAATTCAAATAA
*
15883172 CCCTATTCAATT
66 CCCCATTCAATT
15883184 AATTAAATGG
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
77 68 0.99
78 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.40
Consensus pattern (77 bp):
CACATATACTAAATCTTGAAAAAGTACTATAATTTCCTTGTCATATATGATGGTAATTCAAATAA
CCCCATTCAATT
Found at i:15883548 original size:64 final size:62
Alignment explanation
Indices: 15883455--15883599 Score: 159
Period size: 64 Copynumber: 2.3 Consensus size: 62
15883445 TTTTATGAGG
* *** *
15883455 GGATTATTCAAGGCTTTTTTGACCAAAAAACGTGTTGAATAATCCTTTACAAAAAAAGTAA-ATA
1 GGATTATTCAAGGCTTTTCTGACCAAAAAACACCTTGAATAAT-CTTTA-AAAAAAA-TAAGAAA
* *
15883519 GGGTTATTCAAGGCATTTTCTGGCC-AAAAACACCTTGAATAATCTTTAAAAAAAATAAGAAA
1 GGATTATTCAAGGC-TTTTCTGACCAAAAAACACCTTGAATAATCTTTAAAAAAAATAAGAAA
*
15883581 GGATTATTGAAGGCGTTTT
1 GGATTATTCAAGGC-TTTT
15883600 TTTATAAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
61 3 0.04
62 25 0.36
63 5 0.07
64 28 0.41
65 8 0.12
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (62 bp):
GGATTATTCAAGGCTTTTCTGACCAAAAAACACCTTGAATAATCTTTAAAAAAAATAAGAAA
Found at i:15885090 original size:10 final size:10
Alignment explanation
Indices: 15885075--15885105 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
15885065 GTTAAGCTTA
15885075 ATAAATGAAC
1 ATAAATGAAC
15885085 ATAAATGAAC
1 ATAAATGAAC
15885095 ATAAATGAAC
1 ATAAATGAAC
15885105 A
1 A
15885106 AAAGTTGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.19
Consensus pattern (10 bp):
ATAAATGAAC
Found at i:15893110 original size:61 final size:64
Alignment explanation
Indices: 15893044--15893185 Score: 163
Period size: 63 Copynumber: 2.3 Consensus size: 64
15893034 TTTTTTATAA
* * *
15893044 AAAAATGCCTTTAATAATCCC--CTCTCATTTTTT-T-AGGGATTATTT-AGGGCATTTTTTG-C
1 AAAAATGCCTTGAATAATCCCTACT-TAATTTTTTGTAAGGAATTATTTGA-GGCATTTTTTGAC
15893103 C
64 C
* *
15893104 AGAAAATACCTTGAATAA-CCCTACTTAATTTTTTGTAAGGAATTATTTGAGGCATTTTTTGACT
1 A-AAAATGCCTTGAATAATCCCTACTTAATTTTTTGTAAGGAATTATTTGAGGCATTTTTTGACC
15893168 AAAAATGCCTTGAATAAT
1 AAAAATGCCTTGAATAAT
15893186 TAAAAAAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
60 4 0.06
61 22 0.32
62 3 0.04
63 36 0.53
64 3 0.04
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (64 bp):
AAAAATGCCTTGAATAATCCCTACTTAATTTTTTGTAAGGAATTATTTGAGGCATTTTTTGACC
Found at i:15894941 original size:131 final size:129
Alignment explanation
Indices: 15894788--15895718 Score: 509
Period size: 131 Copynumber: 7.2 Consensus size: 129
15894778 ATTTTATAAC
* * * * * * *
15894788 AATTATTAGAGAAGGGGTATTTTCATAATTATAGTGTGGGGGAATAATAGCCCATTTAGCCATAA
1 AATTATAAGAAAAGGGGTATTTTCATAATTATAGTATGAGGGCATAATAGTCCATTTGGCCATAA
* * *
15894853 GTCAATTTCTTATTGTGTAATGTATAAAGGTATTTTAGTAATTTCATCAGAGATTATTTAGTAAA
66 GTAAATTTCTTATCGTGTAATGTA-AAAGGTATTTTAGTAATTTCAT-AGGGATTATTTAGTAAA
15894918 T
129 T
* * * * * * * *
15894919 AATTATAATATAAGGGGTATTTTCATAATTGTAATATGAGAGCGTAATAGTCAATTTGGCCATAT
1 AATTATAAGAAAAGGGGTATTTTCATAATTATAGTATGAGGGCATAATAGTCCATTTGGCCATAA
* * * * * * * * *
15894984 GTAAATTTCTTAAACATATAAAG-GAAAGGCCATTTT-GATAATTTCCTGGGGGATTATTTTGTA
66 GTAAATTTCTT-ATCGTGTAATGTAAAAGG-TATTTTAG-TAATTTCAT-AGGGATTATTTAGTA
*
15895047 AAA
127 AAT
* * * * * *
15895050 AATTATAAGAAAATGAGTATTTTCGTAATTATGGTATGAGGGCATAATAATCCATTTGGCCACAA
1 AATTATAAGAAAAGGGGTATTTTCATAATTATAGTATGAGGGCATAATAGTCCATTTGGCCATAA
* *
15895115 GTGAATTTCTTATCGTGT-ATGTAAAGGGTATTTTA-TCAATTTCATAGGGGATTATTTAGTAAA
66 GTAAATTTCTTATCGTGTAATGTAAAAGGTATTTTAGT-AATTTCATA-GGGATTATTTAGTAAA
15895178 T
129 T
** * ** * ** * * * * *
15895179 AATTATAAAGGGAAGGGCTATTTTTGTAATTAT-GATATTAATGCATCACAGTCAATTTGGCAAC
1 AATTAT-AAGAAAAGGGGTATTTTCATAATTATAG-TATGAGGGCATAATAGTCCATTTGGCCAT
* * * * * * * *
15895243 ATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTCA-TAATTTCATAGGAGATTATTTTGTA
64 AAGTAAATTTCTTATCGTGTAATGTAAAAGGTATTTT-AGTAATTTCATAGG-GATTATTTAGTA
*
15895307 ATT
127 AAT
* * * * * * *
15895310 AATTATAAGAGAAA-TGGTATTTTCGTACTGATCA-TATAAGGGCATAATAGTCCATTTAG-CTT
1 AATTATAAGA-AAAGGGGTATTTTCATAATTAT-AGTATGAGGGCATAATAGTCCATTTGGCCAT
** * * * * * ** * *
15895372 GGTGTCAATTTCTTATCATATCATAG-AAAGGGTCA-TTTAGTATATTTTTTAAGGATT-TCTTG
64 -AAGTAAATTTCTTATCGTGTAAT-GTAAAAGGT-ATTTTAGTA-ATTTCATAGGGATTAT-TTA
15895434 GTAAAT
124 GTAAAT
* ** * * * ** *
15895440 AATAATAAGAAAATAGGTATTTTCATAATTATGGTATGAGGGAATAACAGTAAATTTGGACATAT
1 AATTATAAGAAAAGGGGTATTTTCATAATTATAGTATGAGGGCATAATAGTCCATTTGGCCATA-
* * * * * *
15895505 ATTAACTTT-TTATC--ATAATG-AAAAGGGTATTTTGGTAATTTAATAAGTGATTATTTAG-AA
65 AGTAAATTTCTTATCGTGTAATGTAAAA-GGTATTTTAGTAATTTCAT-AGGGATTATTTAGTAA
15895565 AT
128 AT
* * * * * * *
15895567 AATTATAAGAGAATGGGTATTTTCGTAATTATAGTATGAAGGAATAATAGTCCATTTGGCCACAT
1 AATTATAAGAAAAGGGGTATTTTCATAATTATAGTATGAGGGCATAATAGTCCATTTGGCCATAA
* * * * * * * *
15895632 GTCAATTTCTTATCATTTAATAG-AACA-GAATTTTAAG-AAATGCATAGGGGATTATTTAGAAA
66 GTAAATTTCTTATCGTGTAAT-GTAAAAGGTATTTT-AGTAATTTCATA-GGGATTATTTAGTAA
15895694 AT
128 AT
* *
15895696 ATTTATAAGTGAAA-GGGTATTTT
1 AATTATAAG-AAAAGGGGTATTTT
15895719 TTAGTATTAT
Statistics
Matches: 610, Mismatches: 153, Indels: 76
0.73 0.18 0.09
Matches are distributed among these distances:
126 5 0.01
127 73 0.12
128 44 0.07
129 68 0.11
130 203 0.33
131 209 0.34
132 8 0.01
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (129 bp):
AATTATAAGAAAAGGGGTATTTTCATAATTATAGTATGAGGGCATAATAGTCCATTTGGCCATAA
GTAAATTTCTTATCGTGTAATGTAAAAGGTATTTTAGTAATTTCATAGGGATTATTTAGTAAAT
Found at i:15895186 original size:260 final size:261
Alignment explanation
Indices: 15894772--15895645 Score: 694
Period size: 260 Copynumber: 3.4 Consensus size: 261
15894762 AACTTTATAA
* * * ** * * * *
15894772 GAGATTATTTTAT-AACAATTATTAGAGAAGGGGTATTTTCATAATTATAGTGTGGGGGAATAAT
1 GAGATTATTTTGTAAAAAATTATAAGAGAAATGGTATTTTCGTAATTATAGTATGAGGGCATAAT
* * *
15894836 AGCCCATTTAGCCATAAGTCAATTTCTTATTGTGTAATGTATAAAGGTATTTTAGTAATTTCATC
66 AGTCCATTTAGCCACAAGTCAATTTCTTATCGTGTAATGTATAAAGGTATTTTAGTAATTTCATC
* * * *
15894901 AGAGATTATTTAGTAAATAATTATAATA-TAAGGGGTATTTTCATAATTGTAATATGAGA-GCGT
131 AGAGATTATTTAGTAAATAATTATAA-AGGAAGGGCTATTTTCATAATTATAATATGA-ATGCAT
* * * *
15894964 AATAGTCAATTTGGCCATATGTAAATTTCTTAAACATATAAAGGAAAGGCCATTTTGATAATTTC
194 AACAGTCAATTTGGCAACATGTAAATTTCTT-AACATATAAAGGAAAGGCCATTTTCATAATTTC
* *
15895029 CTGG
258 ATAG
* *
15895033 GGGATTATTTTGTAAAAAATTATAAGA-AAATGAGTATTTTCGTAATTATGGTATGAGGGCATAA
1 GAGATTATTTTGTAAAAAATTATAAGAGAAATG-GTATTTTCGTAATTATAGTATGAGGGCATAA
* * * *
15895097 TAATCCATTTGGCCACAAGTGAATTTCTTATCGTGT-ATGTA-AAGGGTATTTTA-TCAATTTCA
65 TAGTCCATTTAGCCACAAGTCAATTTCTTATCGTGTAATGTATAAAGGTATTTTAGT-AATTTCA
* ** * *
15895159 T-AGGGGATTATTTAGTAAATAATTATAAAGGGAAGGGCTATTTTTGTAATTATGATATTAATGC
129 TCA-GAGATTATTTAGTAAATAATTATAAA-GGAAGGGCTATTTTCATAATTATAATATGAATGC
* * * * *
15895223 ATCACAGTCAATTTGGCAACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTCATAATTT
192 ATAACAGTCAATTTGGCAACATGTAAATTTCTTAACATATAAAGGAAAGGCCATTTTCATAATTT
15895288 CATAG
257 CATAG
** * * *
15895293 GAGATTATTTTGTAATTAATTATAAGAGAAATGGTATTTTCGTACTGATCA-TATAAGGGCATAA
1 GAGATTATTTTGTAAAAAATTATAAGAGAAATGGTATTTTCGTAATTAT-AGTATGAGGGCATAA
***** * * * *
15895357 TAGTCCATTTAGCTTGGTGTCAATTTCTTATCATATCATAG-A-AAGGGTCA-TTTAGTATATTT
65 TAGTCCATTTAGCCACAAGTCAATTTCTTATCGTGTAAT-GTATAAAGGT-ATTTTAGTA-ATTT
** * * * * * ** *
15895419 TTTAAG-GATT-TCTTGGTAAATAATAAT-AAGAAAATAGG-TATTTTCATAATTATGGTATGAG
127 CATCAGAGATTAT-TTAGTAAATAATTATAAAG-GAA-GGGCTATTTTCATAATTATAATATGAA
* * * * * * * * ** **
15895480 GGAATAACAGTAAATTTGGACATATAT-TAACTTT-TTATC--ATAATGAAAAGGGTATTTTGGT
189 TGCATAACAGTCAATTTGG-CA-ACATGTAAATTTCTTAACATATAAAGGAAAGGCCATTTTCAT
* *
15895541 AATTTAATAA
252 AATTTCATAG
* * * * *
15895551 GTGATTATTTAG-AAATAATTATAAGAG-AATGGGTATTTTCGTAATTATAGTATGAAGGAATAA
1 GAGATTATTTTGTAAAAAATTATAAGAGAAAT-GGTATTTTCGTAATTATAGTATGAGGGCATAA
* *
15895614 TAGTCCATTTGGCCACATGTCAATTTCTTATC
65 TAGTCCATTTAGCCACAAGTCAATTTCTTATC
15895646 ATTTAATAGA
Statistics
Matches: 499, Mismatches: 92, Indels: 48
0.78 0.14 0.08
Matches are distributed among these distances:
256 4 0.01
257 66 0.13
258 36 0.07
259 4 0.01
260 194 0.39
261 115 0.23
262 79 0.16
263 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (261 bp):
GAGATTATTTTGTAAAAAATTATAAGAGAAATGGTATTTTCGTAATTATAGTATGAGGGCATAAT
AGTCCATTTAGCCACAAGTCAATTTCTTATCGTGTAATGTATAAAGGTATTTTAGTAATTTCATC
AGAGATTATTTAGTAAATAATTATAAAGGAAGGGCTATTTTCATAATTATAATATGAATGCATAA
CAGTCAATTTGGCAACATGTAAATTTCTTAACATATAAAGGAAAGGCCATTTTCATAATTTCATA
G
Found at i:15896531 original size:130 final size:128
Alignment explanation
Indices: 15896293--15896593 Score: 298
Period size: 130 Copynumber: 2.3 Consensus size: 128
15896283 TGTATGAGGG
* * * * * * *
15896293 CATAATAGTCCCTTTGATCATATATCAATTTCTAATCATATATTGGAAAGGGTGTTTTGTAATTT
1 CATAATAGTCCATTT-AGCATATGTCAATTTCAAATCATATAGTGGAAAGGATATTTTGTAATTT
* * ** * * *
15896358 CATAGGAGATTATTCAGTAAATAATTATAAGAGTAGGAGTATTTTCATAATTATGGTATTACAA
65 CATAAGAGATTATTCAGTAAATAAATATAAGAAAAAGAGTATTTTCATAATTATGCTATAACAA
* *
15896422 CATAATAGTCCATTTAGCAATATGTTAATTTCAAATCATATAGTGGAAAGGATATTTTCTTAATT
1 CATAATAGTCCATTTAGC-ATATGTCAATTTCAAATCATATAGTGGAAAGGATATTTT-GTAATT
* ** ** * **
15896487 TCATAAGAGATTATTTAGTAAATAAATATTAA-AAAAATTGTATTTTTGTTATTATGCTATAAGG
64 TCATAAGAGATTATTCAGTAAATAAATA-TAAGAAAAAGAGTATTTTCATAATTATGCTATAACA
*
15896551 G
128 A
* * *
15896552 CATAATAGTCCATTTGGCTACATGTCAATTTCATATCATATA
1 CATAATAGTCCATTTAGC-ATATGTCAATTTCAAATCATATA
15896594 ATGAAAAAGG
Statistics
Matches: 139, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
128 2 0.01
129 47 0.34
130 87 0.63
131 3 0.02
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.40
Consensus pattern (128 bp):
CATAATAGTCCATTTAGCATATGTCAATTTCAAATCATATAGTGGAAAGGATATTTTGTAATTTC
ATAAGAGATTATTCAGTAAATAAATATAAGAAAAAGAGTATTTTCATAATTATGCTATAACAA
Found at i:15896632 original size:130 final size:128
Alignment explanation
Indices: 15896498--15897117 Score: 358
Period size: 129 Copynumber: 4.8 Consensus size: 128
15896488 CATAAGAGAT
* * *
15896498 TATTTAGTAAATAAATATTAAAAAAATTG-TATTTT-TGTTATTATGCTATAAG-GGCATAATAG
1 TATTTAGTAAATAATTA-TAAAAAAATGGCTATTTTCT-TAATTATG--ATAAGAGGCATAATAG
* * *
15896560 TCCATTTGGCTACATGTCAATTTCATATCATATAATGAAAAAGGCATTCT-AGTAGTTTTC-TAG
62 TCAATTTGGCTACATGTCAATTTCATATCATATAATGAAAAAGGCATT-TGA-TA-ATTTCACAG
15896623 GGGAG
124 GGGAG
* *
15896628 TATTTTA-TAAATAATTATAAGAGAAA-GGCTATTTTCTTAATTATGATAAGAAGGCATAGTAGT
1 TA-TTTAGTAAATAATTATAA-AAAAATGGCTATTTTCTTAATTATGATAAG-AGGCATAATAGT
* * * * *
15896691 CAATTTGGTTACATGTCAATTTCTTATCATGTAATGGAAAGGGCATTTGATAATTTCACAGGGGA
63 CAATTTGGCTACATGTCAATTTCATATCATATAATGAAAAAGGCATTTGATAATTTCACAGGGGA
*
15896756 T
128 G
* * * **
15896757 TATTTAGTAAATAATTATAAAAAAATGGC-ATTTTCATAATTATTATATGAGGGTGTAATAGTCA
1 TATTTAGTAAATAATTATAAAAAAATGGCTATTTTCTTAATTATGATAAGA-GGCATAATAGTCA
* * * * * * **
15896821 ATTTAGCCT-CATGTAAATTTCTTAACATATAAAG-AAAAGGCCATTTCAATAATTT-ATTGAGG
65 ATTT-GGCTACATGTCAATTTCATATCATATAATGAAAAAGG-CATTT-GATAATTTCACAG-GG
*
15896883 GAT
126 GAG
* * * *
15896886 TATTTTGTAAATAATTATAAGAAAAAAT-G-TATTTTCATAATTAT-ATTATGAAGGCATAATAA
1 TATTTAGTAAATAATTAT-A-AAAAAATGGCTATTTTCTTAATTATGA-TAAG-AGGCATAATAG
* * * ** ** * * * * * * * * *
15896948 TCCATTTAGCCACAAATGGATATCTTATCTTGT-ATG-TAAAGGATATTTTAGCAATTTCATAGG
62 TCAATTTGGCTACATGTCAATTTCATATCATATAATGAAAAAGG-CATTTGA-TAATTTCACAGG
*
15897011 GGAT
125 GGAG
* ** * * *
15897015 TATTTAGTAAATAATTATAAAAGAATGATTATTCTT-GTAATTAAGATATTA-ATGCATAATAGT
1 TATTTAGTAAATAATTATAAAAAAATGGCTATT-TTCTTAATTATGATA--AGAGGCATAATAGT
* ** *
15897078 CAATTTGGCAACACATCAATTTCTTATCATATAATAGAAA
63 CAATTTGGCTACATGTCAATTTCATATCATATAAT-GAAA
15897118 TGACATTTTG
Statistics
Matches: 386, Mismatches: 72, Indels: 62
0.74 0.14 0.12
Matches are distributed among these distances:
127 12 0.03
128 78 0.20
129 147 0.38
130 134 0.35
131 14 0.04
132 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.38
Consensus pattern (128 bp):
TATTTAGTAAATAATTATAAAAAAATGGCTATTTTCTTAATTATGATAAGAGGCATAATAGTCAA
TTTGGCTACATGTCAATTTCATATCATATAATGAAAAAGGCATTTGATAATTTCACAGGGGAG
Found at i:15898216 original size:130 final size:126
Alignment explanation
Indices: 15897779--15898216 Score: 364
Period size: 130 Copynumber: 3.4 Consensus size: 126
15897769 ATAATACGCT
* * * * * *
15897779 ATTTGGTCACATGTAAATTTATTATCACATAATGGAAAAAGCATTTTGATAATTTTCTATGCGAT
1 ATTTGG-CACATATCAATTTCTTATCACATAATGGAAAAGGCATTTTTATAATTTTCTA-GGGAT
* * ** *
15897844 TATTTAATAAATAATTATAAGAAAAGGGAAATTTTCATAATTATGATATGAGGACACAATA-TAC
64 TATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATGA-ATGAGG-CATAATAGT-C
15897908 C
126 C
* *
15897909 ATTTGGCTACATATCAATTTCTTA-CAACATAATTGAAAAGGCA-TTTTAGAAATTTTCTAAGGG
1 ATTTGGC-ACATATCAATTTCTTATC-ACATAATGGAAAAGGCATTTTTA-TAATTTTCT-AGGG
* * ** * *
15897972 ATTATTTAGTAAATAATTATAAGAGAATGGGTAATTTCATGGTTATTGTATGAAGGTATAATAGT
62 ATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTA-TGAATG-AGGCATAATAGT
15898037 CC
125 CC
* * * * * ** **
15898039 ATTTGATCACATGTAAATTTCTAATCATAT-ATCAAAAATGGTGTTTTTATAA-TTTCATAGGAG
1 ATTTG-GCACATATCAATTTCTTATCACATAATGGAAAA-GGCATTTTTATAATTTTC-TAGG-G
*
15898102 ATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATGGAATTATGGCATAATAGT
62 ATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTAT-GAATGA-GGCATAATAGT
*
15898167 TC
125 CC
* * * * *
15898169 ATTTGGCAACTTTTCAATTTCTTATCATATAATGGAAAGGGTATTTTT
1 ATTTGGC-ACATATCAATTTCTTATCACATAATGGAAAAGGCATTTTT
15898217 GTTATTATGG
Statistics
Matches: 245, Mismatches: 46, Indels: 34
0.75 0.14 0.10
Matches are distributed among these distances:
129 22 0.09
130 204 0.83
131 19 0.08
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (126 bp):
ATTTGGCACATATCAATTTCTTATCACATAATGGAAAAGGCATTTTTATAATTTTCTAGGGATTA
TTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATGAATGAGGCATAATAGTCC
Found at i:15898783 original size:130 final size:127
Alignment explanation
Indices: 15898311--15899402 Score: 486
Period size: 129 Copynumber: 8.5 Consensus size: 127
15898301 TCTAAAGGAG
* * * * * * *
15898311 TATTTTGTAAATAATTATAAGAGAAATGCTATTTTCTTAATTATGA-TATGATA-GCATATTAGT
1 TATTTAGTAAATAATTATAAAAGAAA-GGTATTTTCATAATTATTAGTAT-AAAGGCATAATAGT
* ** * * * * * *
15898374 CCATTTGGTTACATGTCAATTTCTTATCATAAAATGGAATGGGCATTAGATAATTTCACAGAGGA
64 CAATTTGGCCACATGTAAATTTCTTATCATATAAT-GAAAGGGTATTTGATAATTTCATAGA-GA
15898439 T
127 T
* * * * * * *
15898440 TATTCAATAAATAATTATAAAA-AAAGGGGTATTTTCATAATTATGA-TATAAGGGTATAAAATT
1 TATTTAGTAAATAATTATAAAAGAAA--GGTATTTTCATAATTATTAGTATAAAGGCATAATAGT
* ** * * * * * * * *
15898503 CCATTTCACCACATGTCAACTTCTTATCATATAATTTAAAAGTTATTTTGGTAATTTTATAAAGG
64 CAATTTGGCCACATGTAAATTTCTTATCATATAA-TGAAAGGGTA-TTTGATAATTTCATAGA-G
15898568 AT
126 AT
* * * ** * ** * *
15898570 TATTCAAT-AATAATTATAAGAA-AAGGGATATTTTTGTAATTA-TGGTAT-GGGAGAATAAAAG
1 TATTTAGTAAATAATTATAA-AAGAAAGG-TATTTTCATAATTATTAGTATAAAG-GCATAATAG
* * * * ** * * * *
15898631 CCTATTTGACCAAAAATCAATTTCTTGTCATGTAATGTAAAAGGTATTTCGATAATTTCATAGGA
63 TCAATTTGGCCACATGTAAATTTCTTATCATATAATG-AAAGGGTATTT-GATAATTTCATA-GA
*
15898696 AAT
125 GAT
*
15898699 TATTTAGTAAATAATTATAAAAGAAGAGGAATTTTCATAATTATTA-TATAAAGGCATAATAGTC
1 TATTTAGTAAATAATTATAAAAGAA-AGGTATTTTCATAATTATTAGTATAAAGGCATAATAGTC
* * ** * **
15898763 AATTTGGCCACATGTAAATTTCTTAACATATAA-AAGAAGGCCATTTTAGTAATTTTTTAGAGGA
65 AATTTGGCCACATGTAAATTTCTTATCATATAATGA-AAGGGTATTTGA-TAATTTCATAGA-GA
15898827 T
127 T
* * * * * * * *
15898828 TATTTTGTAAATAACTATAGAAA-AAAGAATAATATCCTAATTA-TAGTAT-CAGAGCATAATAA
1 TATTTAGTAAATAATTATA-AAAGAAAG-GTATTTTCATAATTATTAGTATAAAG-GCATAATAG
* * * * * * * * * * *
15898890 TCCATTTGGCCCCAAGTGAATTTCTTATCTTGT-ATGTAATGGGTATTTTAGTGATTTTATAGGG
63 TCAATTTGGCCACATGTAAATTTCTTATCATATAATG-AAAGGGTATTTGA-TAATTTCATA-GA
15898954 GAT
125 GAT
* ** * * * * **
15898957 TATTTAGTAAATAATTATAAGAGAAAGGCTATTTTTGTAATAATGA-TATTAATGTGTAATAGTC
1 TATTTAGTAAATAATTATAAAAGAAAGG-TATTTTCATAATTATTAGTATAAAGGCATAATAGTC
* * * *
15899021 AATTTGGCAACATGTCAATTTCTTATCATATAATAGAAAGGGTATTTTTG-TAATTTCTTAAAAG
65 AATTTGGCCACATGTAAATTTCTTATCATATAAT-GAAAGGGTA--TTTGATAATTTCAT-AGAG
15899085 AT
126 AT
* ** *
15899087 TATTTAG-AAATTAATTATAAAAGAAAGGGTATTTTCATGACGA-TAGTATAAGGGCATAATAGT
1 TATTTAGTAAA-TAATTATAAAAGAAA-GGTATTTTCATAATTATTAGTATAAAGGCATAATAGT
* * * * * * * * *
15899150 CCATTTTGCCACATATTAACTTCTTATCATATAATGGAAAGGGTATTTTGGTTATTTAATAAGTG
64 CAATTTGGCCACATGTAAATTTCTTATCATATAAT-GAAAGGGTA-TTTGATAATTTCAT-AGAG
15899215 AT
126 AT
* * * * * *
15899217 TATTTAG-AAATTATTA-AAAGAGAAAAGGTATTTTCATAATTA-TGGTATCAGGGGATAACCA-
1 TATTTAGTAAATAATTATAAA-AG-AAAGGTATTTTCATAATTATTAGTATAAAGGCATAA-TAG
* * * * * * * *
15899278 TCCATTTGGTCACATGTTAATTTCTTATCATTTAATGGAAAGGGTTTTTGAGAAATTCGTAGAGG
63 TCAATTTGGCCACATGTAAATTTCTTATCATATAAT-GAAAGGGTATTTGATAATTTCATAGA-G
*
15899343 GT
126 AT
* * * * *
15899345 TATTTAGAAAATATTTATAAGAGAAAAAGTATTTTCA-ATATTATTA-TATAAAGACATA
1 TATTTAGTAAATAATTATAAAAG-AAAGGTATTTTCATA-ATTATTAGTATAAAGGCATA
15899403 GCAGTACATT
Statistics
Matches: 728, Mismatches: 188, Indels: 94
0.72 0.19 0.09
Matches are distributed among these distances:
127 2 0.00
128 46 0.06
129 447 0.61
130 222 0.30
131 8 0.01
132 3 0.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (127 bp):
TATTTAGTAAATAATTATAAAAGAAAGGTATTTTCATAATTATTAGTATAAAGGCATAATAGTCA
ATTTGGCCACATGTAAATTTCTTATCATATAATGAAAGGGTATTTGATAATTTCATAGAGAT
Found at i:15899017 original size:129 final size:130
Alignment explanation
Indices: 15898884--15899121 Score: 277
Period size: 130 Copynumber: 1.8 Consensus size: 130
15898874 TATCAGAGCA
* ** * * * * *
15898884 TAATAATCCATTTGGCCCCAAGTGAATTTCTTATCTTGT-AT-GTAATGGGTATTTTAGTGATTT
1 TAATAATCAATTTGGCAACAAGTCAATTTCTTATCATATAATAG-AAAGGGTATTTTAGTAATTT
*** *
15898947 -TATAGGGGATTATTTAGTAAA-TAATTATAAGAGAAAGGCTATTTTTGTAATAATGATATTAAT
65 CT-TAAAAGATTATTTAG-AAATTAATTATAAAAGAAAGGCTATTTTTGTAATAATGATATTAAT
15899010 GTG
128 GTG
* * *
15899013 TAATAGTCAATTTGGCAACATGTCAATTTCTTATCATATAATAGAAAGGGTATTTTTGTAATTTC
1 TAATAATCAATTTGGCAACAAGTCAATTTCTTATCATATAATAGAAAGGGTATTTTAGTAATTTC
*
15899078 TTAAAAGATTATTTAGAAATTAATTATAAAAGAAAGGGTATTTT
66 TTAAAAGATTATTTAGAAATTAATTATAAAAGAAAGGCTATTTT
15899122 CATGACGATA
Statistics
Matches: 89, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
129 34 0.38
130 53 0.60
131 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (130 bp):
TAATAATCAATTTGGCAACAAGTCAATTTCTTATCATATAATAGAAAGGGTATTTTAGTAATTTC
TTAAAAGATTATTTAGAAATTAATTATAAAAGAAAGGCTATTTTTGTAATAATGATATTAATGTG
Found at i:15899240 original size:259 final size:258
Alignment explanation
Indices: 15898697--15899250 Score: 571
Period size: 259 Copynumber: 2.1 Consensus size: 258
15898687 TTCATAGGAA
* * ** * * * * **
15898697 ATTATTTAGTAAATAATTATAAA-AGAAGAGGAATTTTCATAATTATTATATAAAGGCATAATAG
1 ATTATTTAGTAAATAATTA-AAAGAGAAAAGGTATTTTTGTAATAATGATATTAATGTGTAATAG
* * * *
15898761 TCAATTTGGCCACATGTAAATTTCTTAACATATAAAAGAAGGCCATTTTAGTAATTTTTTAGAGG
65 TCAATTTGGCAACATGTAAATTTCTTAACATATAAAAGAAGGCCATTTTAGTAATTTCTTAAAAG
* * ** *
15898826 ATTATTTTGTAAATAACTATAGAAAAAAGAATAATATCCTAATTATAGTATCAGAGCATAATAAT
130 ATTATTTAGTAAATAACTATAGAAAAAAGAATAATATCATAACGATAGTATAAGAGCATAATAAT
* * * * * * * *
15898891 CCATTTGGCCCCAAGTGAATTTCTTATCTTGTATGTAATGGGTATTTTAGTGATTTTATAGGGG
195 CCATTTGGCCACAAGTGAACTTCTTATCATATATGGAAAGGGTATTTTAGTGATTTAATAAGGG
*
15898955 ATTATTTAGTAAATAATTATAAGAG-AAAGGCTATTTTTGTAATAATGATATTAATGTGTAATAG
1 ATTATTTAGTAAATAATTAAAAGAGAAAAGG-TATTTTTGTAATAATGATATTAATGTGTAATAG
* * * ** *
15899019 TCAATTTGGCAACATGTCAATTTCTTATCATATAATAGAAAGGGTATTTTTGTAATTTCTTAAAA
65 TCAATTTGGCAACATGTAAATTTCTTAACATATAAAAG-AAGGCCATTTTAGTAATTTCTTAAAA
* ** * * * *
15899084 GATTATTTAG-AAATTAATTATA-AAAGAAAGGGTATTTTCATGACGATAGTATAAGGGCATAAT
129 GATTATTTAGTAAA-TAACTATAGAAA-AAAGAATAATATCATAACGATAGTATAAGAGCATAAT
* * * * *
15899147 AGTCCATTTTGCCACATA-TTAACTTCTTATCATATAATGGAAAGGGTATTTTGGTTATTTAATA
192 AATCCATTTGGCCACA-AGTGAACTTCTTATCATAT-ATGGAAAGGGTATTTTAGTGATTTAATA
*
15899211 AGTG
255 AGGG
*
15899215 ATTATTTAG-AAATTATTAAAAGAGAAAAGGTATTTT
1 ATTATTTAGTAAATAATTAAAAGAGAAAAGGTATTTT
15899251 CATAATTATG
Statistics
Matches: 239, Mismatches: 49, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
257 6 0.03
258 85 0.36
259 108 0.45
260 40 0.17
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (258 bp):
ATTATTTAGTAAATAATTAAAAGAGAAAAGGTATTTTTGTAATAATGATATTAATGTGTAATAGT
CAATTTGGCAACATGTAAATTTCTTAACATATAAAAGAAGGCCATTTTAGTAATTTCTTAAAAGA
TTATTTAGTAAATAACTATAGAAAAAAGAATAATATCATAACGATAGTATAAGAGCATAATAATC
CATTTGGCCACAAGTGAACTTCTTATCATATATGGAAAGGGTATTTTAGTGATTTAATAAGGG
Found at i:15899735 original size:130 final size:129
Alignment explanation
Indices: 15899521--15900122 Score: 566
Period size: 130 Copynumber: 4.6 Consensus size: 129
15899511 TAAAATTTCA
* ** * *
15899521 TAGGGGATTATTTAGTAAATAATAATTAGAGAAAA-GGTATTTTAATATTTATGGTATGA-GACT
1 TAGGGGATTATTTAGTAAATAATTA-TAGA-AAAAGGGTATTTTCGTAATTATGATATGAGGA-T
* * * * *
15899584 ATAATAGTCCTTTTGGTTACATGTTAATTTCTTATAATATAATAGGAAAGGCATTTTGGTAATTT
63 ACAATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATAGGAAAGGCATTTTGGTAATTT
15899649 TT
128 TT
* * * *
15899651 TAGGTGATTATTTAGTAAATAATTATCATAAAAAGGGTATTTTCCTAATTATGATATGACGATAC
1 TAGGGGATTATTTAGTAAATAATTAT-AGAAAAAGGGTATTTTCGTAATTATGATATGAGGATAC
* * * * * *
15899716 AGTAGTCCATTTGGCTACATGTCAATTTTTTGTCATATAATAGTAATGGCATTTTGGTAAATTTT
65 AATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATAGGAAAGGCATTTTGGTAATTTTT
* * * * *
15899781 TAGGGGATTATTTAGTAAATAATTATAGGAATAGTGTATTTTTGTAATTATAATATGATGGA-AC
1 TAGGGGATTATTTAGTAAATAATTATAGAAAAAGGGTATTTTCGTAATTATGATATGA-GGATAC
* * * * * * * *
15899845 GACAGTCCACTTGGCTACATGTCAATTTTTTTATCATGTAATCGAAAAGGCATTTTGATAATTTT
65 AATAGTCCATTTGGCTACATGTCAA-TTTCTTATCATATAATAGGAAAGGCATTTTGGTAATTTT
*
15899910 C
129 T
* * *
15899911 TAGGGGATTATTTAGTAAAAAATTATA-AAAAGTATGGGTTTTTTTTTTTGTAATTATGATATGA
1 TAGGGGATTATTTAGTAAATAATTATAGAAAA--A-GGG----TATTTTCGTAATTATGATATGA
** * * * *
15899975 GGGCAAAATAATCCATTTAGCTACATGTCAATTTCTTATCATATAAT-GGAAAAGGCATTTTGGA
59 GGATACAATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATAGG-AAAGGCATTTTGGT
**
15900039 AATTTCA
123 AATTTTT
* * * * * *
15900046 TAGAGGATTTTTTAGTAAATAATTATAAGAAAAAGGGTATTTTCGTAATTATGGTATAAGGACAT
1 TAGGGGATTATTTAGTAAATAATTAT-AGAAAAAGGGTATTTTCGTAATTATGATATGAGGATAC
*
15900111 AATAGTTCATTT
65 AATAGTCCATTT
15900123 AGCCATATGC
Statistics
Matches: 386, Mismatches: 70, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
129 55 0.14
130 219 0.57
131 3 0.01
132 2 0.01
134 4 0.01
135 57 0.15
136 42 0.11
137 4 0.01
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (129 bp):
TAGGGGATTATTTAGTAAATAATTATAGAAAAAGGGTATTTTCGTAATTATGATATGAGGATACA
ATAGTCCATTTGGCTACATGTCAATTTCTTATCATATAATAGGAAAGGCATTTTGGTAATTTTT
Found at i:15900343 original size:199 final size:197
Alignment explanation
Indices: 15899981--15900370 Score: 525
Period size: 199 Copynumber: 2.0 Consensus size: 197
15899971 ATGAGGGCAA
* *
15899981 AATAATCCATTTAGCTACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTTGGAAATTTCA
1 AATAATCCATTTAGCTACATGCCAATTTCTTATCATATAATGGAAAAGGCATTTTGGAAATTTAA
*
15900046 TAGAGGATTTTTTAGTAAATAATTATAAGAAAAAGGGTATTTTCGTAATTATGGTATAAGGACAT
66 TAGAGGATTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTCGTAATTATGGTATAAGGACAT
* * * *
15900111 AATAGTTCATTTAGCCATATGCTAATCTCTAATCATATAATGAAATAAGGTATTTTAGTAATTAT
131 AATAGTCCATTTAGACACATGCTAATCTCTAATCATATAATGAAA-AAGGCATTTT-GTAATTAT
15900176 GCAT
194 GCAT
* * * * *
15900180 AATAGTCCATTTAGCTATATGCCAATTTCTTATCATATAATGG-AATGGATATTTTGGTAATTTA
1 AATAATCCATTTAGCTACATGCCAATTTCTTATCATATAATGGAAAAGG-CATTTTGGAAATTTA
* * * * *
15900244 ATAGAGGGTTATTTAGTAAATAATTTTAAGAGAAAA-GGTATTTTTGTGATTATGGTATAAGGGC
65 ATAGAGGATTATTTAGTAAATAATTATAAGA-AAAAGGGTATTTTCGTAATTATGGTATAAGGAC
* * * *
15900308 ATACTAGTCCATTT-GAACACATGTTAATTTCTAATCATATAATGGAAAAGGCATTTTGTAATT
129 ATAATAGTCCATTTAG-ACACATGCTAATCTCTAATCATATAATGAAAAAGGCATTTTGTAATT
15900371 TCATAGCAGA
Statistics
Matches: 167, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
197 6 0.04
198 14 0.08
199 143 0.86
200 4 0.02
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (197 bp):
AATAATCCATTTAGCTACATGCCAATTTCTTATCATATAATGGAAAAGGCATTTTGGAAATTTAA
TAGAGGATTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTCGTAATTATGGTATAAGGACAT
AATAGTCCATTTAGACACATGCTAATCTCTAATCATATAATGAAAAAGGCATTTTGTAATTATGC
AT
Found at i:15900858 original size:130 final size:128
Alignment explanation
Indices: 15900202--15901649 Score: 866
Period size: 130 Copynumber: 11.1 Consensus size: 128
15900192 AGCTATATGC
* * * * *
15900202 CAATTTCTTATCATATAATG-GAATGGATATTTTGGTAATTT-AAT-AGAGGGTTATTTAGTAAA
1 CAATTTCTTATCATATAATGAAAATGG-CATTTTAGTAATTTCATTAAGA-GATTATTTAGTAAA
* * * * * * *
15900264 TAATTTTAAGAGAAAAGGTATTTTTGTGATTATGGTATAAGGGCATACTAGTCCATTTGAACACA
64 TAATTATAAGAGAAAGGGTATTTTCGTAATTATGGTATAA-GGCATAATAGT-CTTTTG-CCACA
15900329 TGT
126 TGT
* * * *
15900332 TAATTTCTAATCATATAATGGAAAA-GGCATTTT-GTAATTTCA-T-AGCAGATTCTTTTGTAAA
1 CAATTTCTTATCATATAAT-GAAAATGGCATTTTAGTAATTTCATTAAG-AGATTATTTAGTAAA
* * * * * *** * * *
15900393 TAAATATTAA-AGAAATGATATTTTTGTAATAATAACATGAAGGTATAATAGTCAATTTGGCTAC
64 TAATTA-TAAGAGAAAGGGTATTTTCGTAATTATGGTAT-AAGGCATAATAGTC--TTTTGCCAC
15900457 ATGT
125 ATGT
* * * * ** * * *
15900461 GAATTTCTTATCATCTAATCAAAAAGGGTGTTTTTGGAATTTCATGT--GTGATTATTTAGTAAA
1 CAATTTCTTATCATATAAT-GAAAATGGCATTTTAGTAATTTCAT-TAAGAGATTATTTAGTAAA
* * * * * * * *
15900524 TAATTATAAAAGAATGGGTATTTTCATAATTA-GGATATATGGGCATAATATTCAATTTAGCTAT
64 TAATTATAAGAGAAAGGGTATTTTCGTAATTATGG-TATA-AGGCATAATAGTC--TTTTGCCAC
*
15900588 ATTT
125 ATGT
* * ** * * * * *
15900592 AAATTTCTTAAT-ATATAATGGAAACAGCATTTTGGTAATTT--TTAAGGGATTACTTAGCAAAA
1 CAATTTCTT-ATCATATAATGAAAATGGCATTTTAGTAATTTCATTAAGAGATTATTTAGTAAAT
* * * * *
15900654 AATTATAAGA-AAAGGGATATTTTTGTAATGATTGTATGAAGGCACAATAGTACATTTGGCCACA
65 AATTATAAGAGAAAGGG-TATTTTCGTAATTATGGTAT-AAGGCATAATAGT-C-TTTTGCCACA
15900718 TGT
126 TGT
* *
15900721 CAATTTCTTATCATATAATGAAAAAGGCATTTTAGTAATTTCATTAA-AAAGTT-TTTAGTAAAT
1 CAATTTCTTATCATATAATGAAAATGGCATTTTAGTAATTTCATTAAGAGA-TTATTTAGTAAAT
* * * *
15900784 AATTATAAGAGAAAGGGGATTTTCATAATTATGGTACAAGGACATAGTAGTTCTTTTAGCCACAT
65 AATTATAAGAGAAAGGGTATTTTCGTAATTATGGTATAAGG-CATAATAG-TCTTTT-GCCACAT
*
15900849 AT
127 GT
* * * * * *
15900851 CAATTTCTTACCATATAACGAAAATGGCATTTT-GCTAATTTCAAT-GGTGATTATTTAGCAAAT
1 CAATTTCTTATCATATAATGAAAATGGCATTTTAG-TAATTTCATTAAGAGATTATTTAGTAAAT
* * * *
15900914 AATTATAAAAGAAAGGGCATTTTCGTAATTAAT-GTATAAGGGCATAATAGCCAATGTTGCCACA
65 AATTATAAGAGAAAGGGTATTTTCGTAATT-ATGGTATAA-GGCATAATAGTC--TTTTGCCACA
15900978 TGT
126 TGT
* * * * * * *
15900981 TAATTTCTTATTACATAATGAAAATGGTATCTTGGTAATTTCA-TAAAAGATTATTTAGTAAATA
1 CAATTTCTTATCATATAATGAAAATGGCATTTTAGTAATTTCATTAAGAGATTATTTAGTAAATA
* * * * * **
15901045 ATTATAAGAGAAAGAGTATTTTTGTAATTATGATATTACGGCATAATGGTCAATTTTGTAACATG
66 ATTATAAGAGAAAGGGTATTTTCGTAATTATGGTA-TAAGGCATAATAGTC--TTTTGCCACATG
15901110 T
128 T
* * * * *
15901111 CAATTTCTTATCGTATAAAGGAAAATGGCATTTTTGTAATTTC-TTAAGGGATTATTTAG-AAGT
1 CAATTTCTTATCATAT-AATGAAAATGGCATTTTAGTAATTTCATTAAGAGATTATTTAGTAA-A
* * * * *
15901174 TAATTTTAAGTG-AAGAGGTATTTTTGTAATTATGGTATAAGGGCATAATAGTCTATTTGGCTAG
64 TAATTATAAGAGAAAG-GGTATTTTCGTAATTATGGTATAA-GGCATAATAGTCT-TTT-GCCAC
15901238 ATGT
125 ATGT
* * * * * * * *
15901242 CAATTTCTTATCATATCATG-GAAGGTGTATTTTAGTAATTT-TTTAAGGGATTATTTAGTTAGT
1 CAATTTCTTATCATATAATGAAAATG-GCATTTTAGTAATTTCATTAAGAGATTATTTAGTAAAT
* * *
15901305 AA-TACTAAGA-AAAGAGTATTTTCATAATTATGGTATGAAGGCATAATAGTCCATTTGGCCACA
65 AATTA-TAAGAGAAAGGGTATTTTCGTAATTATGGTAT-AAGGCATAATAGT-C-TTTTGCCACA
15901368 TGT
126 TGT
* * * * * *
15901371 CAATTCCTAATCATATAACGGAAAA-GGTATTTTCA-TAAATTTCA-TAGGAGATTATTTAGCAA
1 CAATTTCTTATCATATAA-TGAAAATGGCATTTT-AGT-AATTTCATTAAGAGATTATTTAGTAA
* * * * * *
15901433 ATAATTATTAGAGATAGGGTATTTTCGTAATTATGGTATGATGACATAATAGTATATTTGGCTAC
63 ATAATTATAAGAGAAAGGGTATTTTCGTAATTATGGTAT-AAGGCATAATAGTCT-TTT-GCCAC
15901498 ATGT
125 ATGT
* * * *
15901502 CAATTTTTTTTCATATAATGGAAGAA--G-AGTTTTGGTAATTT--TCTAAGGGATTATTTAGTA
1 CAATTTCTTATCATATAAT-GAA-AATGGCA-TTTTAGTAATTTCAT-TAAGAGATTATTTAGTA
* * * * * * *
15901562 AGTAATTGTAAGAG-AA-GATATATTTGTGTAATTATGATATGAGGGCATAATAGTCCATTTGGC
62 AATAATTATAAGAGAAAGGGTAT-TTT-CGTAATTATGGTAT-AAGGCATAATAGT-C-TTTTGC
* *
15901625 TACATAT
122 CACATGT
15901632 CAATTTCTTATCATATAA
1 CAATTTCTTATCATATAA
15901650 CATAAATGAC
Statistics
Matches: 1029, Mismatches: 214, Indels: 150
0.74 0.15 0.11
Matches are distributed among these distances:
127 1 0.00
128 13 0.01
129 253 0.25
130 478 0.46
131 275 0.27
132 8 0.01
133 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (128 bp):
CAATTTCTTATCATATAATGAAAATGGCATTTTAGTAATTTCATTAAGAGATTATTTAGTAAATA
ATTATAAGAGAAAGGGTATTTTCGTAATTATGGTATAAGGCATAATAGTCTTTTGCCACATGT
Found at i:15902144 original size:130 final size:129
Alignment explanation
Indices: 15901661--15902644 Score: 721
Period size: 130 Copynumber: 7.7 Consensus size: 129
15901651 ATAAATGACT
* * * * * * * * *
15901661 ATTATTTAGTAAATAAATATAAGAGAATGAGTATTTTTGCATTTAGGGTATAAGAGCATAACAGT
1 ATTATTTAGTAAATAATTATAAGAGAAAG-GTATTTTTGTAATTATGGTATGAGGGAATAATAGT
* * * * * *
15901726 CTATTTTGCCACATGTCAACTTCTTATCATATAATGGCAAA-AGTATTTTGGTAATTTAATAAGG
65 CCATTTGGCCACATGTCAATTTCTTATCATATAATGG-AAAGGGTATTTTGGTAATTTCATAAGA
15901790 G
129 G
* * * *
15901791 ATTATTTAAT-AATAATGATAAGAGAAGGGGTATTTTTGTAATTATGATAT-AGGAGAATAATAG
1 ATTATTTAGTAAATAATTATAAGAGAA-AGGTATTTTTGTAATTATGGTATGAGG-GAATAATAG
* * * * *
15901854 TCCATTTGGCCACAAGTCAATTTCTTAACATGTAATGTAAAGGGTATTTTGTTAATTTCATAAGA
64 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTCATAAGA
15901919 G
129 G
* * ** * *
15901920 ATT-TTTTGTAAATAATTATAAGAG-AAGG-ATATTTCGTAATTATAATATGTGGGTATAATAGT
1 ATTATTTAGTAAATAATTATAAGAGAAAGGTAT-TTTTGTAATTATGGTATGAGGGAATAATAGT
** * * * * * * * * * *
15901982 CGGTTAGGCCATATGTAAATTTCTTAACATATAATGGAATGGGTGTTTTGGCAATTTCCTAGGGG
65 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTCATAAGAG
* * * * *
15902047 ATTATTTAGTAAATAATTATAAGACCAAAGGTATTTTTGTAATTATGGTACGAAGGCATAATAAT
1 ATTATTTAGTAAATAATTATAAGA-GAAAGGTATTTTTGTAATTATGGTATGAGGGAATAATAGT
* * ** * * * *
15902112 CCATTTGGCCACACGTCAATTTCTTATTATATAATGGAGTGGGCATTTTAGTAATTTCTTAAGGG
65 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTCATAAGAG
* ** * * ** *
15902177 ATTATTTAGTAAATAAATATAAGAGAAATGGTATTTTCATAATTATAGTTTGAGGGCTTAATAGA
1 ATTATTTAGTAAATAATTATAAGAGAAA-GGTATTTTTGTAATTATGGTATGAGGGAATAATAGT
* * * * **** * * *
15902242 CTATTTGGCCATA-GCCTAATTTCTTATAATATAGCAAAAAGGTTATTTTGGTAATTTCATAGGT
65 CCATTTGGCCACATGTC-AATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTCATAAGA
15902306 G
129 G
* * * * *** *
15902307 ATTATTCAGTAAATAATTATAAGAGAAGGGGTATTTTTATAAGTACAATAGGAGGGAATAATAGT
1 ATTATTTAGTAAATAATTATAAGAGAA-AGGTATTTTTGTAATTATGGTATGAGGGAATAATAGT
** * * * * *
15902372 AAATTTGACCACATATTAAATTCTTATCATATAATGGAAAGGGTATTTTGGTTATTT-AGTAA-A
65 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTCA-TAAGA
15902435 G
129 G
* * **
15902436 ATTATTTAG-AAAT-ATTAT-AG-G---GGCATTTTAGTAATTATGGTATGAAAGAATAATTA-T
1 ATTATTTAGTAAATAATTATAAGAGAAAGGTATTTTTGTAATTATGGTATGAGGGAATAA-TAGT
* * * * * *
15902493 ACATTTGCCCACATGTCAATTTCTTATCATGTAATGGAAAAGGG--TTTTGGGAAATTCATAGGA
65 CCATTTGGCCACATGTCAATTTCTTATCATATAATGG-AAAGGGTATTTTGGTAATTTCATAAGA
15902556 G
129 G
* * * * * * *
15902557 ATTATTTAGTAAATAATTATAAGAGAACGAGTATTTTCGTTATTATGATATAAGGCAA-AATAGG
1 ATTATTTAGTAAATAATTATAAGAGAAAG-GTATTTTTGTAATTATGGTATGAGGGAATAATAGT
* * * *
15902621 ACATTTAGACACATGTCACTTTCT
65 CCATTTGGCCACATGTCAATTTCT
15902645 CATTAAATAA
Statistics
Matches: 666, Mismatches: 160, Indels: 58
0.75 0.18 0.07
Matches are distributed among these distances:
120 11 0.02
121 66 0.10
122 12 0.02
123 5 0.01
124 2 0.00
125 2 0.00
126 4 0.01
127 86 0.13
128 58 0.09
129 140 0.21
130 278 0.42
131 2 0.00
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.37
Consensus pattern (129 bp):
ATTATTTAGTAAATAATTATAAGAGAAAGGTATTTTTGTAATTATGGTATGAGGGAATAATAGTC
CATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTCATAAGAG
Found at i:15902398 original size:756 final size:759
Alignment explanation
Indices: 15900947--15902405 Score: 1576
Period size: 756 Copynumber: 1.9 Consensus size: 759
15900937 CGTAATTAAT
* * * * *
15900947 GTATAAGGGCATAATAGCCAATGTTGCCACATGTTAATTTCTTATTACATAATGAAAATGGTATC
1 GTATAAGAGCATAACAGCCAATGTTGCCACATGTCAACTTCTTATCACATAATGAAAA-GGTATC
* * *
15901012 TTGGTAATTTCATAAAAGATTATTTAGTAAATAATTATAAGAGAAAGAGTATTTTTGTAATTATG
65 TTGGTAATTTAATAAAAGATTATTTAATAAATAATGATAAGAGAAAGAGTATTTTTGTAATTATG
* * * * * * * *
15901077 ATATTACGGCATAATGGTCAATTTTGTAACATGTCAATTTCTTATCGTATAAAGGAAAATGGCAT
130 ATATTACGGAATAATAGTCAATTTGGCAACAAGTCAATTTCTTAACATATAAAGGAAAAGGGCAT
* * * * * * *
15901142 TTTTGTAATTTCTTAAGGGATTATTTAGAAGTTAATTTTAAGTGAAGAGGTATTTTTGTAATTAT
195 TTTTGTAATTTCATAAGAGATTATTTAGAAGATAATTATAAGAGAAGAGATATTTTCGTAATTAT
** * * * * * *
15901207 GGTATAAGGGCATAATAGTCTATTTGGCTAGATGTCAATTTCTTATCATATCATGGAAGGTGTAT
260 AATATAAGGGCATAATAGTCGATTAGGCCAGATGTAAATTTCTTAACATATAATGGAAGGTGTAT
* ** * *
15901272 TTTAGTAATTTTTTAAGGGATTATTTAGTTAGTAATACTAAGAAAAGAGTATTTTCATAATTATG
325 TTTAGCAATTTCCTAAGGGATTATTTAGTAAATAATACTAAGAAAAGAGTATTTTCATAATTATG
* * * *
15901337 GTATGAAGGCATAATAGTCCATTTGGCCACATGTCAATTCCTAATCATATAACGGAAAAGGTATT
390 GTACGAAGGCATAATAATCCATTTGGCCACACGTCAATTCCTAATCATATAACGGAAAAGGCATT
* * * *
15901402 TTCATAAATTTCATAGGAGATTATTTAGCAAATAATTATTAGAGATAGGGTATTTTCGTAATTAT
455 TTCATAAATTTCATAGGAGATTATTTAGCAAATAAATATAAGAGAAAGGGTATTTTCATAATTAT
* * * * * * * *
15901467 GGTATGATGACATAATAGTATATTTGGCTACATGTCAATTTTTTTTCATATAATGGAAGAAGAGT
520 AGTATGAGGACATAATAGTATATTTGGC-ACATGCCAATTTCTTATAATATAATGCAAAAAGAGT
* * * * * * *
15901532 TTTGGTAATTTTCTAAGGGATTATTTAGTAAGTAATTGTAAGAGAAGATATATTTGTGTAATTAT
584 TTTGGTAATTTTCTAAGGGATTATTCAGTAAATAATTATAAGAGAAGAGATATTTGTATAAGTAC
* * * ** * * *
15901597 GATATGAGGGCATAATAGTCCATTTGGCTACATATCAATTTCTTATCATATAACATAAATGACTA
649 AATAGGAGGGAATAATAGTAAATTTGACCACATATCAAATTCTTATCATATAACATAAATGACTA
15901662 TTATTTAGTAAATAAATATAAGAGAATGAGTATTTTTGCATTTAGG
714 TTATTTAGTAAATAAATATAAGAGAATGAGTATTTTTGCATTTAGG
* * * *
15901708 GTATAAGAGCATAACAGTCTATTTTGCCACATGTCAACTTCTTATCATATAATGGCAAAA-GTAT
1 GTATAAGAGCATAACAGCCAATGTTGCCACATGTCAACTTCTTATCACATAAT-G-AAAAGGTAT
* ** * *
15901772 TTTGGTAATTTAATAAGGGATTATTTAAT-AATAATGATAAGAGAAGGGGTATTTTTGTAATTAT
64 CTTGGTAATTTAATAAAAGATTATTTAATAAATAATGATAAGAGAAAGAGTATTTTTGTAATTAT
* * * * * * *
15901836 GATA-TAGGAGAATAATAGTCCATTTGGCCACAAGTCAATTTCTTAACATGT-AATGTAAAGGGT
129 GATATTACG-GAATAATAGTCAATTTGGCAACAAGTCAATTTCTTAACATATAAAGGAAAAGGGC
*
15901899 A-TTTTGTTAATTTCATAAGAGATT-TTTTGTAA-ATAATTATAAGAGAAG-GATA-TTTCGTAA
193 ATTTTTG-TAATTTCATAAGAGATTATTTAG-AAGATAATTATAAGAGAAGAGATATTTTCGTAA
** * * *
15901959 TTATAATATGTGGGTATAATAGTCGGTTAGGCCATATGTAAATTTCTTAACATATAATGGAATGG
256 TTATAATATAAGGGCATAATAGTCGATTAGGCCAGATGTAAATTTCTTAACATATAATGGAA-GG
* * * **
15902024 -GTGTTTTGGCAATTTCCTAGGGGATTATTTAGTAAATAATTA-TAAGACCAAAG-GTATTTTTG
320 TGTATTTTAGCAATTTCCTAAGGGATTATTTAGTAAATAA-TACTAAGA--AAAGAGTATTTTCA
* * * * *
15902086 TAATTATGGTACGAAGGCATAATAATCCATTTGGCCACACGTCAATTTCTTATTATATAATGGAG
382 TAATTATGGTACGAAGGCATAATAATCCATTTGGCCACACGTCAATTCCTAATCATATAACGGAA
** * * *
15902151 TGGGCATTTT-AGT-AATTTCTTAAGG-GATTATTTAGTAAATAAATATAAGAGAAATGGTATTT
447 AAGGCATTTTCA-TAAATTTCAT-AGGAGATTATTTAGCAAATAAATATAAGAGAAAGGGTATTT
* * *
15902213 TCATAATTATAGTTTGAGGGCTTAATAG-ACTATTTGGC-CATAGCCTAATTTCTTATAATAT-A
510 TCATAATTATAGTATGAGGACATAATAGTA-TATTTGGCACAT-GCC-AATTTCTTATAATATAA
*
15902275 -GCAAAAAG-GTTATTTTGGTAA-TTTC-ATAGGTGATTATTCAGTAAATAATTATAAGAGAAGG
572 TGCAAAAAGAG---TTTTGGTAATTTTCTA-AGG-GATTATTCAGTAAATAATTATAAGAGAAGA
* * *
15902336 GGTATTTTTATAAGTACAATAGGAGGGAATAATAGTAAATTTGACCACATATTAAATTCTTATCA
632 GATATTTGTATAAGTACAATAGGAGGGAATAATAGTAAATTTGACCACATATCAAATTCTTATCA
15902401 TATAA
697 TATAA
15902406 TGGAAAGGGT
Statistics
Matches: 568, Mismatches: 111, Indels: 43
0.79 0.15 0.06
Matches are distributed among these distances:
753 1 0.00
754 10 0.02
755 11 0.02
756 264 0.46
757 82 0.14
758 26 0.05
759 29 0.05
760 68 0.12
761 72 0.13
762 1 0.00
763 4 0.01
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (759 bp):
GTATAAGAGCATAACAGCCAATGTTGCCACATGTCAACTTCTTATCACATAATGAAAAGGTATCT
TGGTAATTTAATAAAAGATTATTTAATAAATAATGATAAGAGAAAGAGTATTTTTGTAATTATGA
TATTACGGAATAATAGTCAATTTGGCAACAAGTCAATTTCTTAACATATAAAGGAAAAGGGCATT
TTTGTAATTTCATAAGAGATTATTTAGAAGATAATTATAAGAGAAGAGATATTTTCGTAATTATA
ATATAAGGGCATAATAGTCGATTAGGCCAGATGTAAATTTCTTAACATATAATGGAAGGTGTATT
TTAGCAATTTCCTAAGGGATTATTTAGTAAATAATACTAAGAAAAGAGTATTTTCATAATTATGG
TACGAAGGCATAATAATCCATTTGGCCACACGTCAATTCCTAATCATATAACGGAAAAGGCATTT
TCATAAATTTCATAGGAGATTATTTAGCAAATAAATATAAGAGAAAGGGTATTTTCATAATTATA
GTATGAGGACATAATAGTATATTTGGCACATGCCAATTTCTTATAATATAATGCAAAAAGAGTTT
TGGTAATTTTCTAAGGGATTATTCAGTAAATAATTATAAGAGAAGAGATATTTGTATAAGTACAA
TAGGAGGGAATAATAGTAAATTTGACCACATATCAAATTCTTATCATATAACATAAATGACTATT
ATTTAGTAAATAAATATAAGAGAATGAGTATTTTTGCATTTAGG
Found at i:15904035 original size:129 final size:129
Alignment explanation
Indices: 15903673--15905876 Score: 1061
Period size: 130 Copynumber: 17.2 Consensus size: 129
15903663 TTGTAAGAGA
* * * * * * * * *
15903673 TTATTTAGTAAATAATTATTACAGAAAGGGTATTTTAG-AATTATGGTTTGAGGGCGTATTAGTC
1 TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAGTT
* * ** * * **
15903737 CATTT-GTCTACATGTCAATTTCTTATCATATAATGGGAAGGGCATTTTGGTAATCTT-TTAGGG
66 CATTTGGTC-ACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAAT-TTCATAAAG
15903800 G
129 G
*** * * * *
15903801 ATTATTTCA-TAAATAATTATAAGAAAAAGGGTATTTTTGTAATTACAATATGAGGGCACATTTG
1 -TTATTT-AGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAG
* * **
15903865 TCCATTTGG-CTACATGTCAATTTCTAAAT-ATATTTTGAAAAAGGCATTTTGGTAATTTCATAA
64 TTCATTTGGTC-ACATGCCAATTTCT-AATCATATAATGAAAAAGGCATTTTGGTAATTTCATAA
15903928 AGG
127 AGG
* * * *
15903931 TTATTTTGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGCTATCA-AGTATAATAGTT
1 TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAGTT
* * * * *
15903995 CATTTGGTCACATGCCAATTGCTAATCATGTAATGAAAAAAGGTATTTTTGTAATTTCATAAGGG
66 CATTTGGTCACATGCCAATTTCTAATCATATAATG-AAAAAGGCATTTTGGTAATTTCATAAAGG
* * * * *
15904060 ATTATTTAGTAAATAATAATTAGAGAAAAGGGTATTTTAGTAATTATGGTCATG-GA--ATGACA
1 -TTATTTAGTAAATAATTATAAGA-AAAAGGGTATTTTTGTAATTATGGT-ATGAGAGCATAATA
* * * * ** * * *
15904122 -ATCTATTTAGTTATATGTTAATTTCTTATCATATATTGGAAAAGGCATTTTGGTAATTTCATAG
63 GTTC-ATTTGGTCACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATA-
*
15904186 AGGG
126 AAGG
* * * ** * * * *
15904190 TTATTTAATAAATAATTATAAGAGAAAGAGTACCTTTATAATTATCGTATGAGAGCATACTAGTC
1 TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAGTT
* * ** * ** * *
15904255 CATTTGGCCACATGCCAATTTCTAATCATATAATGGAATGGGTATTTTCATAATTTCATAGGAGA
66 CATTTGGTCACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATA-AAGG
* * * * *
15904320 TTATTTAGTACATAAATATTAGAGAAA-TGTATTTTTGTAATTATGGTATGACG-GCA-AATAGT
1 TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGA-GAGCATAATAGT
* * * * *
15904382 TAATTTGG-CTACAT-CTTAATTTCTTATCAAATAAT-AAAAATGGCA-TTTGGTAAGTTT-GTA
65 TCATTTGGTC-ACATGC-CAATTTCTAATCATATAATGAAAAA-GGCATTTTGGTAA-TTTCATA
*
15904442 AGGG
126 AAGG
* ** *
15904446 ATTATTTAGCAAATAATTATAAG-AGGA-GGTACTTTTGTAATTATGGTATGATG-GCATAATAG
1 -TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGA-GAGCATAATAG
** ** * * * * * *
15904508 ACCATTTGACCACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTAGTAATTTCTTAAAT
64 TTCATTTGGTCACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATAAA-
*
15904573 GA
128 GG
* * **
15904575 TTATTTAGTAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGA-AGGCATAATAG-
1 TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGA-GCATAATAGT
** * * * ** * *
15904638 TCAATTTGGTCTTATGTCAATTTCTTATCATATAATG-GATGGGCATTTTGGCAATTTCAT--GG
65 TC-ATTTGGTCACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATAAAG
15904700 G
129 G
* * ** *
15904701 CAATTACTTAGTAAATAA-TATAAG-ATAAGACTATTTTTGTAATTATTGTATGAGAGCATAATA
1 ---TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATA
* * * * *
15904764 G-TCAATTTGGTCACATGTCAATTTTTTATCATATAAGGGAAACAA--TATTTTGGGTAATTTCA
63 GTTC-ATTTGGTCACATGCCAATTTCTAATCATATAA-TGAAA-AAGGCATTTT-GGTAATTTCA
15904826 T--A--
124 TAAAGG
* * * * * **
15904828 TAATTTAGTAAGTAATTATAA-AAGAAAGAGCATTTTCGTAATTATTATATGA-AGGCATAATAG
1 TTATTTAGTAAATAATTATAAGAA-AAAGGGTATTTTTGTAATTATGGTATGAGA-GCATAATAG
** * ** * * * * * **
15904891 -TCAATTCCG-CTGCATGTAAATTACTTAA-CATATAAAGGAAAGGGCATTTTGGTAGTTTTTTA
64 TTC-ATTTGGTC-ACATGCCAATTTC-TAATCATATAATGAAAAAGGCATTTTGGTAATTTCATA
**
15904953 GGGG
126 AAGG
* * * * *
15904957 ATTATTTAGTAAATAATTATAAGAATAAGGATATTTTTGTAAGTATGGAATGAGAGCATCATA-T
1 -TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAGT
* * * * *
15905021 TCCATTTGGCCACATGTCAATTTCTTAT-ATTATAATGAAATAA-GCATTTTAGTAATTTTATAA
65 T-CATTTGGTCACATGCCAATTTCTAATCA-TATAATGAAA-AAGGCATTTTGGTAATTTCATAA
*
15905084 GGG
127 AGG
* * ** * * *
15905087 ACTT-TTTAGT--A-AA-TATAAGAGAAAGGTTATTTTCATAATTATGATTTGAGGGCATAATA-
1 --TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAG
* * * * * * *
15905146 TTCCATTTGG-C-CATAACTCAAATGCTTATTATATAATG-GAAATGCTATTTTGGTAATTTCAT
64 TT-CATTTGGTCACAT-GC-CAATTTCTAATCATATAATGAAAAAGGC-ATTTTGGTAATTTCAT
* * *
15905208 GATGA
125 AAAGG
* * * * * * *
15905213 TTATTCAATAAATAATTATAA-AAGAAACGGTATTTTTGTAGTTATTGTATGGGGGCATAATAG-
1 TTATTTAGTAAATAATTATAAGAA-AAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAGT
* * ** * * * * *
15905276 TCAATGTGGTCATATTTCAATTTGTTATCATATAATGGAAAAGGTATGTTGGTAATTTCAT--A-
65 TC-ATTTGGTCACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATAAAG
15905338 -
129 G
* * * * * *
15905338 TTATTTAGTAAATAATTATATGAAAAGGGGTATTTTTGTAATTATGATATTAGGGCATAATGGTT
1 TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAGTT
* * ** * * * * * * * **
15905403 AATTTAG-CAACATATCGATTTCTTATCATATAATGGAAATGGTATTTTTGTAATTTCTTAGGGG
66 CATTTGGTC-ACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATAAAGG
* * * * * * * * * *
15905467 ATTATTTA-AAAATTATTTATAAGCAAAGGGGTATTTTCGTAATTATAGTATAAGGGCTTAATGG
1 -TTATTTAGTAAA-TAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAG
* ** * * * * * * * * *
15905531 TCCATTTGGTCATGTGTCAATTTTTTATCATATAATGGAAAGGGCCTTTTTGTAATTTCTTAAGG
64 TTCATTTGGTCACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATAAAG
15905596 G
129 G
* * * * * * * * *
15905597 ATTATTTAATAAATAACTATAAGAGAAGGGGTACTTTCGTAATTATGGTATAAGGGCATAATAAT
1 -TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAGT
* * * * * * *
15905662 TTATTTGG-C-CATAGCTCAATATCTAATCATATAATGGAAAAGGTAATTTGATAATTT--TATA
65 TCATTTGGTCACAT-GC-CAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATAAA
15905723 GG
128 GG
* * * * * **
15905725 CAATTATTCAATAAATAATGATAAGAGAATGGGTA-TTTTGTAATTATGGTATGAGAAAATAATA
1 ---TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATA
* *** * * * * * * *
15905789 -TTCAATTTGGTTACATATTAAATACTTATCATATAATGAAAAGGGTATTTTGGTTATTTAATAA
63 GTTC-ATTTGGTCACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATAA
*
15905853 GGG
127 AGG
*
15905856 ATTATTTA-AAAATAATTATAA
1 -TTATTTAGTAAATAATTATAA
15905877 CAGAAGAGGT
Statistics
Matches: 1601, Mismatches: 371, Indels: 207
0.73 0.17 0.09
Matches are distributed among these distances:
124 21 0.01
125 122 0.08
126 169 0.11
127 142 0.09
128 158 0.10
129 365 0.23
130 573 0.36
131 48 0.03
132 3 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (129 bp):
TTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTTGTAATTATGGTATGAGAGCATAATAGTT
CATTTGGTCACATGCCAATTTCTAATCATATAATGAAAAAGGCATTTTGGTAATTTCATAAAGG
Found at i:15904364 original size:388 final size:381
Alignment explanation
Indices: 15903648--15905101 Score: 1070
Period size: 388 Copynumber: 3.8 Consensus size: 381
15903638 TAATGGAATG
* *
15903648 GGTATTTTCATAATTTTGTAAGAGATTATTTAGTAAATAATTATTACAG-AAAGGGTATTTTAG-
1 GGTATTTTCGTAA-TTTGTAAGGGATTATTTAGTAAATAATTATTA-AGAAAAGGGTATTTTAGT
* *** * *
15903711 AATTATGGTTTGAGGGCGTATTAGTCCATTTGTCTACATGTCAATTTCTTATCATATAATGGGAA
64 AATTATGGTATG-GAATG-A-TAATCCATTTGT-TACATGTCAATTTCTTATCATATAATGGAAA
* *
15903776 GGGCATTTTGGTAATCTT-TTAG-GGGATTATTTCATAAATAATTATAAGAAAAAGGGTATTTTT
125 GGGCATTTTGGTAAT-TTCTTAGAGGG-TTATTTAATAAATAATTATAAGAGAAAGGGTA-TTTT
* * * * * * * **
15903839 GTAATTA-CAATATGAGGGCACATTTGTCCATTTGGCTACATGTCAATTTCTAAAT-ATATTTTG
187 ATAATTATC-GTATGAGAGCATAATAGTCCATTTGGCCACATGTCAATTTCT-AATCATATAATG
* ** * * * *
15903902 AAAAAGGCATTTTGGTAATTTCATA-AAGGTTATTTTGTAAATAATTATAAGAAAAAGGGTATTT
250 GAATGGGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAAATATAAGAAAAA--GTATTT
* * **
15903966 TTGTAATTATGCTATCA-AGTATAATAGTTCATTTGGTCACATGCCAATTGCTAATCATGTAATG
313 TTGTAATTATG-TATGACAGCATAATAGTTCATTTGGTCACATGCCAATTGCTAATCAAATAAT-
15904030 AAAAAA
376 AAAAAA
* * *
15904036 GGTATTTTTGTAATTTCATAAGGGATTATTTAGTAAATAATAATTAGAGAAAAGGGTATTTTAGT
1 GGTATTTTCGTAATTT-GTAAGGGATTATTTAGTAAATAATTATTA-AGAAAAGGGTATTTTAGT
* * * * * *
15904101 AATTATGGTCATGGAATGACAATCTATTTAGTTATATGTTAATTTCTTATCATATATTGGAAAAG
64 AATTATGGT-ATGGAATGATAATCCATTT-GTTACATGTCAATTTCTTATCATATAATGGAAAGG
* * *
15904166 GCATTTTGGTAATTTCATAGAGGGTTATTTAATAAATAATTATAAGAGAAAGAGTACCTTTATAA
127 GCATTTTGGTAATTTCTTAGAGGGTTATTTAATAAATAATTATAAGAGAAAGGGTA-TTTTATAA
* *
15904231 TTATCGTATGAGAGCATACTAGTCCATTTGGCCACATGCCAATTTCTAATCATATAATGGAATGG
191 TTATCGTATGAGAGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGGAATGG
* ** * * *
15904296 GTATTTTCATAATTTCATAGGAGATTATTTAGTACATAAATATTAGAGAAATGTATTTTTGTAAT
256 GCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAAATATAAGA-AAAAGTATTTTTGTAAT
* * * * * *
15904361 TATGGTATGACGGCA-AATAGTTAATTTGG-CTACAT-CTTAATTTCTTATCAAATAATAAAAAT
320 TAT-GTATGACAGCATAATAGTTCATTTGGTC-ACATGC-CAATTGCTAATCAAATAATAAAAAA
* * * **
15904423 GGCA-TTTGGTAAGTTTGTAAGGGATTATTTAGCAAATAATTA-TAAGAGGA-GGTACTTTT-GT
1 GGTATTTTCGTAA-TTTGTAAGGGATTATTTAGTAAATAATTATTAAGAAAAGGGTA-TTTTAGT
**
15904484 AATTATGGTAT-G-ATGGCATAATAGACCATTTGACCACATGTCAATTTCTTATCATATAATGGA
64 AATTATGGTATGGAAT-G-ATAAT---CCATTTG-TTACATGTCAATTTCTTATCATATAATGGA
* * * * * *
15904547 AAGGGCATTTTAGTAATTTCTTAAATGATTATTTAGTAAATAATTATAAGAGAATGGGTATTTTC
123 AAGGGCATTTTGGTAATTTCTTAGAGGGTTATTTAATAAATAATTATAAGAGAAAGGGTATTTT-
* * * ** *
15904612 ATAATTATGGTATGA-AGGCATAATAGTCAATTTGGTCTTATGTCAATTTCTTATCATATAATGG
187 ATAATTATCGTATGAGA-GCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGG
* * * * *
15904676 -ATGGGCATTTTGGCAATTTCATGGGCA-ATTACTTAGTAAAT-AATATAAGATAAGACTATTTT
251 AATGGGCATTTTGGTAATTTCATAGG-AGATTATTTAGTAAATAAATATAAGA-AAAAGTATTTT
* * ** * *
15904738 TGTAATTATTGTATGAGAGCATAATAG-TCAATTTGGTCACATGTCAATTTTTTATCATATAAGG
314 TGTAATTA-TGTATGACAGCATAATAGTTC-ATTTGGTCACATGCCAATTGCTAATCAAATAA--
* *
15904802 GAAACAA
375 TAAAAAA
* * * * * * * * *
15904809 --TATTTTGGGTAA-TT-TCA--TATAATTTAGTAAGTAATTA-TAAAAGAAAGAGCATTTTCGT
1 GGTATTTT-CGTAATTTGTAAGGGATTATTTAGTAAATAATTATTAAGA-AAAGGGTATTTTAGT
** * * * * * * * * *
15904867 AATTATTATAT-GAAGGCATAATAGTCAATTCCGCTGCATGTAAATTACTTAACATATAAAGGAA
64 AATTATGGTATGGAATG-AT-A-A-TCCATT-TGTTACATGTCAATTTCTTATCATATAATGGAA
* * * *
15904931 AGGGCATTTTGGTAGTTTTTTAG-GGGATTATTTAGTAAATAATTATAAGA-ATAAGGATATTTT
124 AGGGCATTTTGGTAATTTCTTAGAGGG-TTATTTAATAAATAATTATAAGAGA-AAGGGTA-TTT
* * * * * * *
15904994 TGTAAGTATGGAATGAGAGCATCATATTCCATTTGGCCACATGTCAATTTCTTAT-ATTATAATG
186 TATAATTATCGTATGAGAGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCA-TATAATG
* ** * *
15905058 AAATAAGCATTTTAGTAATTTTATAAGG-GACTT-TTTAGTAAATA
250 GAATGGGCATTTTGGTAATTTCAT-AGGAGA-TTATTTAGTAAATA
15905102 TAAGAGAAAG
Statistics
Matches: 855, Mismatches: 158, Indels: 109
0.76 0.14 0.10
Matches are distributed among these distances:
380 2 0.00
381 22 0.03
382 14 0.02
383 195 0.23
384 114 0.13
385 147 0.17
386 40 0.05
387 21 0.02
388 239 0.28
389 45 0.05
390 14 0.02
391 2 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (381 bp):
GGTATTTTCGTAATTTGTAAGGGATTATTTAGTAAATAATTATTAAGAAAAGGGTATTTTAGTAA
TTATGGTATGGAATGATAATCCATTTGTTACATGTCAATTTCTTATCATATAATGGAAAGGGCAT
TTTGGTAATTTCTTAGAGGGTTATTTAATAAATAATTATAAGAGAAAGGGTATTTTATAATTATC
GTATGAGAGCATAATAGTCCATTTGGCCACATGTCAATTTCTAATCATATAATGGAATGGGCATT
TTGGTAATTTCATAGGAGATTATTTAGTAAATAAATATAAGAAAAAGTATTTTTGTAATTATGTA
TGACAGCATAATAGTTCATTTGGTCACATGCCAATTGCTAATCAAATAATAAAAAA
Found at i:15905761 original size:260 final size:249
Alignment explanation
Indices: 15904145--15905776 Score: 760
Period size: 255 Copynumber: 6.4 Consensus size: 249
15904135 TATGTTAATT
* * * * * *
15904145 TCTTATCATATATTGGAAAAGGCATTTTGGTAATTTCATAGAGGGTTATTTAATAAATAATTATA
1 TCTTATCATATAATGGAAATGGTATTTT-GTAATTT--TATAGGATTATTCAATAAATAATTATA
* * * * * * * * * * * *
15904210 AGAGAAAGAGTACCTTTATAATTATCGTATGAGAGCATACTAGTCCATTTGGCCACATGCCAATT
63 AGAGAAAGGGTA-TTTTGTAATTATAGTATAAGGGCATAATAGTCAATGTGGTCATATGTCAATT
* * ** * * ** * * * *
15904275 TCTAATCATATAATGGAATGGGTATTTTCATAATTTCATAGGAGATTATTTAGTACATAAATATT
127 TGTTATCATATAATGGAAAAGGCATGTTGGTAATTTC-----AGATTATTTAATAAATAACTATA
** * * * * *
15904340 AGAGAA-ATGTATTTTTGTAATTATGGTATGACGGCA-AATAGTTAATTTGGCTACAT-CTTAAT
187 AGAGAAGGGGTATTTTCGTAATTATGATATAAGGGCATAATA-TTAATTTGGC--CATACTCAAT
*
15904402 T
249 A
* ** * * * **
15904403 TCTTATCAAATAATAAAAATGGCATTTGGTAAGTTTGTA-AGGGATTATTTAGCAAATAATTATA
1 TCTTATCATATAATGGAAATGGTATTTTGTAA-TTT-TATA-GGATTATTCAATAAATAATTATA
* * * * * * * ** *
15904467 AGAG-GA-GGTACTTTTGTAATTATGGTATGATGGCATAATAGACCATTTGACCACATGTCAATT
63 AGAGAAAGGGTA-TTTTGTAATTATAGTATAAGGGCATAATAGTCAATGTGGTCATATGTCAATT
* * * * * *
15904530 TCTTATCATATAATGGAAAGGGCATTTTAGTAATTTCTTAAATGATTATTTAGTAAATAATTATA
127 TGTTATCATATAATGGAAAAGGCATGTTGGTAATTTC----A-GATTATTTAATAAATAACTATA
* * * * * * *
15904595 AGAGAATGGGTATTTTCATAATTATGGTATGAA-GGCATAATAGTCAATTTGGTCTTATGTCAAT
187 AGAGAAGGGGTATTTTCGTAATTATGATAT-AAGGGCATAATA-TTAATTTGGCCATA-CTCAAT
*
15904659 T
249 A
* * * * *
15904660 TCTTATCATATAATGG--ATGGGCATTTTGGCAATTTCATGGGCAATTACTT-AGTAAATAA-TA
1 TCTTATCATATAATGGAAAT-GGTATTTT-GTAATTTTATAGG--ATTA-TTCAATAAATAATTA
* ** * * * * *
15904721 TAAGA-TAAGACTATTTTTGTAATTATTGTATGAGAGCATAATAGTCAATTTGGTCACATGTCAA
61 TAAGAGAAAGGGTA-TTTTGTAATTATAGTATAAGGGCATAATAGTCAATGTGGTCATATGTCAA
* * ** * * * * * *
15904785 TTTTTTATCATATAAGGGAAACA-ATATTTTGGGTAATTTCATATAATTTAGTAAGTAATTATAA
125 TTTGTTATCATATAATGGAAA-AGGCATGTT-GGTAATTTCAGATTATTTAATAAATAACTATAA
* * * * * * ** * *
15904849 AAGAAAGAGCATTTTCGTAATTATTATATGAA-GGCATAATAGTCAATTCCGCTGCAT-GTAAAT
188 GAGAAGGGGTATTTTCGTAATTATGATAT-AAGGGCATAATA-TTAATTTGGC--CATACTCAAT
15904912 -
249 A
* * * * * * * *
15904912 TACTTAACATATAAAGGAAAGGGCATTTTGGTAGTTTTTTAGGGGATTATTTAGTAAATAATTAT
1 T-CTTATCATATAATGGAAATGGTATTTT-GTAATTTTATA--GGATTATTCAATAAATAATTAT
* * * * * * * * * * * *
15904977 AAGA-ATAAGGATATTTTTGTAAGTATGGAATGAGAGCATCATATTCCATTTGGCCACATGTCAA
62 AAGAGA-AAGGGTA-TTTTGTAATTATAGTATAAGGGCATAATAGTCAATGTGGTCATATGTCAA
* * * * * * ** * * *
15905041 TTTCTTAT-ATTATAAT-GAAATAAGCATTTTAGTAATTTTATAAGGGACTTT--TTAGTAAATA
125 TTTGTTATCA-TATAATGGAAA-AGGCATGTTGGTAATTTCA-GA-TTA-TTTAATAAATAACTA
* * * * * *
15905102 TAAGAGAAAGGTTATTTTCATAATTATGATTTGAGGGCATAATATTCCATTTGGCCATAACTCAA
185 TAAGAGAAGGGGTATTTTCGTAATTATGATATAAGGGCATAATATT-AATTTGGCCAT-ACTCAA
15905167 -A
248 TA
* * * *
15905168 TGCTTATTATATAATGGAAATGCTATTTTGGTAATTTCATGATGATTATTCAATAAATAATTATA
1 T-CTTATCATATAATGGAAATGGTATTTT-GTAATTTTAT-AGGATTATTCAATAAATAATTATA
* * * * ** *
15905233 AAAGAAACGGTATTTTTGTAGTTATTGTATGGGGGCATAATAGTCAATGTGGTCATATTTCAATT
63 AGAGAAAGGGTA-TTTTGTAATTATAGTATAAGGGCATAATAGTCAATGTGGTCATATGTCAATT
* * * * * *
15905298 TGTTATCATATAATGGAAAAGGTATGTTGGTAATTTCATATTATTTAGTAAATAATTATATGAAA
127 TGTTATCATATAATGGAAAAGGCATGTTGGTAATTTCAGATTATTTAATAAATAACTATAAGAGA
* * * * * *
15905363 AGGGGTATTTTTGTAATTATGATATTAGGGCATAATGGTTAATTTAGCAACATA-TCGATT
192 AGGGGTATTTTCGTAATTATGATATAAGGGCATAAT-ATTAATTTGGC--CATACTCAATA
* *
15905423 TCTTATCATATAATGGAAATGGTATTTTTGTAATTTCT-TAGGGGATTATTTAA-AAATTATTTA
1 TCTTATCATATAATGGAAATGGTA-TTTTGTAATTT-TATA--GGATTATTCAATAAA-TAATTA
* * * * * *
15905486 TAAGCA-AAGGGGTATTTTCGTAATTATAGTATAAGGGCTTAATGGTCCATTTGGTCATGTGTCA
61 TAAG-AGAAAGGGTATTTT-GTAATTATAGTATAAGGGCATAATAGTCAATGTGGTCATATGTCA
* * * * *
15905550 ATTTTTTATCATATAATGGAAAGGGCCTTTTTGTAATTTCTTAAGGGATTATTTAATAAATAACT
124 ATTTGTTATCATATAATGGAAAAGGCATGTTGGTAATTTC---A--GATTATTTAATAAATAACT
* * *
15905615 ATAAGAGAAGGGGTACTTTCGTAATTATGGTATAAGGGCATAATAATTTATTTGGCCATAGCTCA
184 ATAAGAGAAGGGGTATTTTCGTAATTATGATATAAGGGCATAAT-ATTAATTTGGCCATA-CTCA
15905680 ATA
247 ATA
* * * *
15905683 TCTAATCATATAATGGAAAAGGTAATTTGATAATTTTATAGGCAATTATTCAATAAATAATGATA
1 TCTTATCATATAATGGAAATGGTATTTTG-TAATTTTATAGG--ATTATTCAATAAATAATTATA
* *
15905748 AGAGAATGGGTATTTTGTAATTATGGTAT
63 AGAGAAAGGGTATTTTGTAATTATAGTAT
15905777 GAGAAAATAA
Statistics
Matches: 1078, Mismatches: 228, Indels: 135
0.75 0.16 0.09
Matches are distributed among these distances:
252 4 0.00
253 84 0.08
254 122 0.11
255 329 0.31
256 202 0.19
257 148 0.14
258 45 0.04
259 18 0.02
260 123 0.11
261 3 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (249 bp):
TCTTATCATATAATGGAAATGGTATTTTGTAATTTTATAGGATTATTCAATAAATAATTATAAGA
GAAAGGGTATTTTGTAATTATAGTATAAGGGCATAATAGTCAATGTGGTCATATGTCAATTTGTT
ATCATATAATGGAAAAGGCATGTTGGTAATTTCAGATTATTTAATAAATAACTATAAGAGAAGGG
GTATTTTCGTAATTATGATATAAGGGCATAATATTAATTTGGCCATACTCAATA
Found at i:15906709 original size:130 final size:130
Alignment explanation
Indices: 15906154--15906813 Score: 478
Period size: 130 Copynumber: 5.1 Consensus size: 130
15906144 TGTATATTAT
* * * * * *
15906154 TAATGGAAAAAGGT-ATTTTCATAATATCATAAAGGATTATTTAGTAACTAATTATTAGAGAAAC
1 TAATGG-AAAATGTCATTTTGATAATTTCATAGAGGATTATTTAGTAAATAATTATTAGAGAAAG
* *** *
15906218 GATATTTTCATAATTATTGTATGATTGTATAATAGTCCATTTGGCTATATGTCAATATCTTATCA
65 GGTATTTTCATAATTA-TGTATGATAACATAATAGTCCATTTGGCTATATGTCAATTTCTTATCA
15906283 TA
129 TA
* * * * * * * * *
15906285 TAATGGGAAATG-CAATTTGGTAATTT-TTAG-GGGTTATTTAGTAATTAATTATAAAAGAATGG
1 TAATGGAAAATGTCATTTTGATAATTTCATAGAGGATTATTTAGTAAATAATTATTAGAGAAAGG
* ** *** * * * *
15906347 TTATTTTCGCACA-TATGATATGAGGGCACAGTAATCCATTTGGCTACATGTCAATTTCTTATCA
66 GTATTTTCATA-ATTATG-TATGATAACATAATAGTCCATTTGGCTATATGTCAATTTCTTATCA
15906411 TA
129 TA
* * * *
15906413 TAATTG-AAAGGTCATTTTCG-TAATTTTATAGAGGGTTATTTAGTAAATAATT-TTAAGAGAAA
1 TAATGGAAAATGTCATTTT-GATAATTTCATAGAGGATTATTTAGTAAATAATTATT-AGAGAAA
* * * * * ** * * *
15906475 GAGTACTTTCGTAACTATGGTAT-A-AGACATATTAGTTTATTTGGCCACT-TGCCAATTTCTAA
64 GGGTATTTTCATAATTAT-GTATGATA-ACATAATAGTCCATTTGGCTA-TATGTCAATTTCTTA
15906537 TCATA
126 TCATA
* ** *
15906542 TAATGGAAAGTGT-ATTTTTCTAATTTCACA-AGGGATTATTTAGTAAATAATTATTAGAGAAAG
1 TAATGGAAAATGTCATTTTGATAATTTCATAGA-GGATTATTTAGTAAATAATTATTAGAGAAAG
* * * *
15906605 GGTATTTTTATAATTATAGTACGATAACATAATAGTCCATTTAGCTATATGTCAAGTTT-TTATT
65 GGTATTTTCATAATTAT-GTATGATAACATAATAGTCCATTTGGCTATATGTCAA-TTTCTTATC
15906669 ATA
128 ATA
* *
15906672 T-ATTGAAAATGTCATTTTGATAATTTCATAGAGGATTATTCAGTAAATAATTA-TA-AGATAAG
1 TAATGGAAAATGTCATTTTGATAATTTCATAGAGGATTATTTAGTAAATAATTATTAGAGA-AAG
** * * * *
15906734 TGGTATTTTCATAATTATGGTATG--AAGGTATATGTGTCCATTTGGCCACATTTCAATTT-TTA
65 -GGTATTTTCATAATTAT-GTATGATAACATA-AT-AGTCCATTTGGCTATATGTCAATTTCTT-
15906796 ATCATA
125 ATCATA
15906802 TAATGGAAAATG
1 TAATGGAAAATG
15906814 GTATTTTTAT
Statistics
Matches: 413, Mismatches: 88, Indels: 56
0.74 0.16 0.10
Matches are distributed among these distances:
127 6 0.01
128 100 0.24
129 122 0.30
130 164 0.40
131 21 0.05
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (130 bp):
TAATGGAAAATGTCATTTTGATAATTTCATAGAGGATTATTTAGTAAATAATTATTAGAGAAAGG
GTATTTTCATAATTATGTATGATAACATAATAGTCCATTTGGCTATATGTCAATTTCTTATCATA
Found at i:15907354 original size:131 final size:131
Alignment explanation
Indices: 15906891--15907402 Score: 447
Period size: 129 Copynumber: 4.0 Consensus size: 131
15906881 ATTTAGCTAT
* * * * * * *
15906891 ATGTCAATTTCTTATCATATAAT-GAAAATGGTATCTTCGTAATTTCATAAGAAATTATTTACTA
1 ATGTCAATTTCTTATCATATAATGGAAAAAGGCATTTTAGTAATTTCTTAAGGAATTATTTAGTA
* * * * * * *
15906955 AATATTTATAAGAGAA-GAGGTATTTT-TTAATTATGATATGAGGGCGTACTAGTCAATTTGACC
66 AATAATTATAAGAAAAGGA-GTATTTTCATAATTATAATATGAGGGCATAGTAGTTAATTTGACC
*
15907018 AT
130 AC
* * * * *
15907020 GTGTAAATTTCTTATCATATAATGGAAAAAGGCA-TGTCGATAATTT-TCTATGGAATTATTTAG
1 ATGTCAATTTCTTATCATATAATGGAAAAAGGCATTTTAG-TAATTTCT-TAAGGAATTATTTAG
* * * * * **
15907083 CT-AATAATTATAAGAAAATGG-GTATTTCCATAATTATAGTAAGAGGGAATAATAGTGCATTTG
64 -TAAATAATTATAAGAAAA-GGAGTATTTTCATAATTATAATATGAGGGCATAGTAGTTAATTTG
*
15907146 GCCAC
127 ACCAC
* * * * * * *
15907151 ATATCAATTT-TTATTATATAATGG-GAATGGCATTTTAGTAATTTGTTAAGGAATTTTTTATTA
1 ATGTCAATTTCTTATCATATAATGGAAAAAGGCATTTTAGTAATTTCTTAAGGAATTATTTAGTA
* * * * * *
15907214 AACAATTATATGAAAAGGAGTATTTTCATAATTATAATATGAAGGCATAGTAGTTTACTTGATCA
66 AATAATTATAAGAAAAGGAGTATTTTCATAATTATAATATGAGGGCATAGTAGTTAATTTGACCA
15907279 C
131 C
* *
15907280 ATGTCAACTTCTTATCATATAATGGAAAAAGGCATTTTAGTAATTTCTTAAGGGATT-TTTAGTA
1 ATGTCAATTTCTTATCATATAATGGAAAAAGGCATTTTAGTAATTTCTTAAGGAATTATTTAGTA
** * * *
15907344 AATAATTTATAAG---AGGAGTATTTTCATTGTTATAGTATGATGGCATAGTAGTTCATTTG
66 AATAA-TTATAAGAAAAGGAGTATTTTCATAATTATAATATGAGGGCATAGTAGTTAATTTG
15907403 GCTATATGTC
Statistics
Matches: 305, Mismatches: 64, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
128 43 0.14
129 106 0.35
130 86 0.28
131 69 0.23
132 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (131 bp):
ATGTCAATTTCTTATCATATAATGGAAAAAGGCATTTTAGTAATTTCTTAAGGAATTATTTAGTA
AATAATTATAAGAAAAGGAGTATTTTCATAATTATAATATGAGGGCATAGTAGTTAATTTGACCA
C
Found at i:15908624 original size:19 final size:19
Alignment explanation
Indices: 15908577--15908670 Score: 63
Period size: 19 Copynumber: 5.1 Consensus size: 19
15908567 TTGGGATTTT
* **
15908577 ACTTAGGATTTAAGAATTC
1 ACTTAGGATTTAGGGTTTC
* *
15908596 ACCTAAGATTTAGGGTTTC
1 ACTTAGGATTTAGGGTTTC
*
15908615 ACTTAGGATTTTA-GGTTTT
1 ACTTAGGA-TTTAGGGTTTC
*
15908634 AC---GG-TTTATGGTTTC
1 ACTTAGGATTTAGGGTTTC
*
15908649 ACTTAAGGCTTTAGGGTTTC
1 ACTT-AGGATTTAGGGTTTC
15908669 AC
1 AC
15908671 CTGGGGTTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
14 4 0.07
15 7 0.12
16 2 0.03
19 29 0.50
20 16 0.28
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.41
Consensus pattern (19 bp):
ACTTAGGATTTAGGGTTTC
Found at i:15908689 original size:19 final size:18
Alignment explanation
Indices: 15908665--15908703 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
15908655 GGCTTTAGGG
*
15908665 TTTCACCTGGGGTTTCGAT
1 TTTCACCTAGGGTTTC-AT
15908684 TTTCACCTAGGGTTTCAT
1 TTTCACCTAGGGTTTCAT
15908702 TT
1 TT
15908704 AGTGTCACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.46
Consensus pattern (18 bp):
TTTCACCTAGGGTTTCAT
Found at i:15908995 original size:20 final size:21
Alignment explanation
Indices: 15908943--15908995 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
15908933 TATATTAAAA
15908943 ATTTTATCA-TTATTATTACTT
1 ATTTTATCATTTATTATTA-TT
*
15908964 A-TTTATCTTTTATTATT-TT
1 ATTTTATCATTTATTATTATT
15908983 ATTTTATCATTTA
1 ATTTTATCATTTA
15908996 ATAATTCTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 3 0.11
20 16 0.57
21 9 0.32
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (21 bp):
ATTTTATCATTTATTATTATT
Found at i:15910278 original size:35 final size:35
Alignment explanation
Indices: 15910239--15910308 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
15910229 CTGCAGTGGT
15910239 TTCTGACCTGTATTTCCA-GTTTCTGCTGCAAAAAA
1 TTCTGACCTGTATTTCCAGGTTT-TGCTGCAAAAAA
** *
15910274 TTCTGGTCTGTATTTCCAGGTTTTTCTGCAAAAAA
1 TTCTGACCTGTATTTCCAGGTTTTGCTGCAAAAAA
15910309 AAATCTGGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 27 0.87
36 4 0.13
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (35 bp):
TTCTGACCTGTATTTCCAGGTTTTGCTGCAAAAAA
Found at i:15910318 original size:37 final size:37
Alignment explanation
Indices: 15910246--15910347 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 37
15910236 GGTTTCTGAC
*
15910246 CTGTATTTCCA-GTTTCTGCTGC--AAAAAATTCTGGT
1 CTGTATTTCCAGGTTT-TGCTGCAAAAAAAAATCTGGT
*
15910281 CTGTATTTCCAGGTTTTTCTGCAAAAAAAAATCTGGT
1 CTGTATTTCCAGGTTTTGCTGCAAAAAAAAATCTGGT
* ** *
15910318 CTGTGTTTTTAGGTTCTGCTGCAAAAAAAA
1 CTGTATTTCCAGGTTTTGCTGCAAAAAAAA
15910348 TTTAGCCTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
35 16 0.28
36 4 0.07
37 37 0.65
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (37 bp):
CTGTATTTCCAGGTTTTGCTGCAAAAAAAAATCTGGT
Found at i:15910344 original size:36 final size:36
Alignment explanation
Indices: 15910259--15910378 Score: 125
Period size: 36 Copynumber: 3.3 Consensus size: 36
15910249 TATTTCCAGT
* * *
15910259 TTCTGCTGC-AAAAAATTCTGGTCTGTATTTCCAGG
1 TTCTGCTGCAAAAAAAATCTGGTCTGTGTTTTCAGG
* * *
15910294 TTTTTCTGCAAAAAAAAATCTGGTCTGTGTTTTTAGG
1 TTCTGCTGC-AAAAAAAATCTGGTCTGTGTTTTCAGG
* * * *
15910331 TTCTGCTGCAAAAAAAATTTAGCCTGTGTTTTCATG
1 TTCTGCTGCAAAAAAAATCTGGTCTGTGTTTTCAGG
*
15910367 TTCTACTGCAAA
1 TTCTGCTGCAAA
15910379 TAATTTCTGG
Statistics
Matches: 69, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
35 7 0.10
36 33 0.48
37 29 0.42
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (36 bp):
TTCTGCTGCAAAAAAAATCTGGTCTGTGTTTTCAGG
Found at i:15910901 original size:14 final size:14
Alignment explanation
Indices: 15910879--15910912 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
15910869 TGTTTTTTTA
*
15910879 TTATTATTTATAAT
1 TTATAATTTATAAT
15910893 TTATAATTTATAAT
1 TTATAATTTATAAT
15910907 TTATAA
1 TTATAA
15910913 ATTTTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATAATTTATAAT
Found at i:15910929 original size:21 final size:19
Alignment explanation
Indices: 15910873--15910929 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
15910863 AATTTTTGTT
15910873 TTTTTATTATTATTTATAA
1 TTTTTATTATTATTTATAA
* *
15910892 TTTATAATTTATAATTTATAAA
1 TTT-TTA-TTATTATTTAT-AA
15910914 TTTTTATTATTCATTT
1 TTTTTATTATT-ATTT
15910930 TTTTTATGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
19 3 0.10
20 6 0.20
21 16 0.53
22 5 0.17
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTATTATTATTTATAA
Found at i:15911212 original size:1 final size:1
Alignment explanation
Indices: 15911206--15911301 Score: 57
Period size: 1 Copynumber: 96.0 Consensus size: 1
15911196 CTAAAATCCC
* * * * * * * * * * *
15911206 TTTTTTTTTCTTTGTTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTCTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
15911271 TTTTTTTGTCTTTTTTTTTTTGTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15911302 GGCTTTGGTT
Statistics
Matches: 65, Mismatches: 30, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.84
Consensus pattern (1 bp):
T
Found at i:15911223 original size:10 final size:11
Alignment explanation
Indices: 15911205--15911302 Score: 77
Period size: 10 Copynumber: 9.5 Consensus size: 11
15911195 TCTAAAATCC
*
15911205 CTTT-TTTTTT
1 CTTTGTTTTGT
15911215 CTTTGTTTTTGT
1 CTTTG-TTTTGT
*
15911227 TTTTGTTTTTGT
1 CTTTG-TTTTGT
15911239 -TTTGTTTTGT
1 CTTTGTTTTGT
15911249 -TTTGTTTTGT
1 CTTTGTTTTGT
*
15911259 C-TTGTTTTTT
1 CTTTGTTTTGT
* *
15911269 TTTTTTTTTGT
1 CTTTGTTTTGT
15911280 CTTT-TTTT-T
1 CTTTGTTTTGT
15911289 -TTTGTTTTGT
1 CTTTGTTTTGT
15911299 -TTTG
1 CTTTG
15911303 GCTTTGGTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
8 3 0.04
9 5 0.07
10 37 0.49
11 14 0.19
12 16 0.21
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.83
Consensus pattern (11 bp):
CTTTGTTTTGT
Found at i:15911229 original size:5 final size:5
Alignment explanation
Indices: 15911216--15911302 Score: 88
Period size: 5 Copynumber: 16.8 Consensus size: 5
15911206 TTTTTTTTTC
*
15911216 TTTGTT TTTGTT TTTGTT TTTGT TTTGT TTTGT TTTGT TTTGT CTTGTT
1 TTTG-T TTTG-T TTTG-T TTTGT TTTGT TTTGT TTTGT TTTGT TTTG-T
* *
15911265 TTTTT TTTTT TTTGT CTTT-T TTT-T TTTGT TTTGT TTTG
1 TTTGT TTTGT TTTGT -TTTGT TTTGT TTTGT TTTGT TTTG
15911303 GCTTTGGTTT
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
4 7 0.09
5 45 0.61
6 22 0.30
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (5 bp):
TTTGT
Found at i:15911454 original size:34 final size:34
Alignment explanation
Indices: 15911405--15911666 Score: 123
Period size: 35 Copynumber: 7.3 Consensus size: 34
15911395 AGAACACCGT
*
15911405 AAGTCAAAAATAAAGGATGACCGAGATAACACCAC
1 AAGTC-AAAATAAAGGATGACCGAGACAACACCAC
* *
15911440 AAGTCAAAATAAAGGATGACC-AGGACAACACTAT
1 AAGTCAAAATAAAGGATGACCGA-GACAACACCAC
* * ** * *
15911474 AAATCACATAATAAATGATGATTGGGACAACATCAC
1 AAGTCA-A-AATAAAGGATGACCGAGACAACACCAC
* **
15911510 AAGTCAGAAATAAAGGAACTG-CCGAGACAACATCGT
1 AAGTCA-AAATAAAGG-A-TGACCGAGACAACACCAC
* * * *
15911546 AAGTAAAAAATAAAGGATGACTTTTTTTGAAAACAACACTAC
1 AAGT-CAAAATAAAGGATGAC------CG-AGACAACACCAC
* * * *
15911588 AAGTTAAAAATAAAGGATGACCAAGAAAACACCGC
1 AAG-TCAAAATAAAGGATGACCGAGACAACACCAC
* * * * * *
15911623 AAGTAAGAAATAACGAATGACCGGGACAATACTAC
1 AAGTCA-AAATAAAGGATGACCGAGACAACACCAC
15911658 AAGTCAAAA
1 AAGTCAAAA
15911667 AAAATAAAGT
Statistics
Matches: 169, Mismatches: 41, Indels: 35
0.69 0.17 0.14
Matches are distributed among these distances:
33 1 0.01
34 37 0.22
35 51 0.30
36 49 0.29
37 3 0.02
41 1 0.01
42 26 0.15
43 1 0.01
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.16
Consensus pattern (34 bp):
AAGTCAAAATAAAGGATGACCGAGACAACACCAC
Found at i:15916731 original size:15 final size:15
Alignment explanation
Indices: 15916711--15916741 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15916701 TGACCCTTCT
15916711 CCAACATATGTAGCA
1 CCAACATATGTAGCA
15916726 CCAACATATGTAGCA
1 CCAACATATGTAGCA
15916741 C
1 C
15916742 TTATGATCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.13, T:0.19
Consensus pattern (15 bp):
CCAACATATGTAGCA
Found at i:15918253 original size:15 final size:15
Alignment explanation
Indices: 15918235--15918265 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15918225 CGTCATCATC
*
15918235 ATCATTATTATTATT
1 ATCATTACTATTATT
15918250 ATCATTACTATTATT
1 ATCATTACTATTATT
15918265 A
1 A
15918266 ATTTACACGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (15 bp):
ATCATTACTATTATT
Found at i:15920424 original size:34 final size:34
Alignment explanation
Indices: 15920381--15920445 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
15920371 CTAGAGTAAA
15920381 GATAAGTATTCTTCAATTGTGAGGGTTAAATAAG
1 GATAAGTATTCTTCAATTGTGAGGGTTAAATAAG
15920415 GATAAGTATTCTTCAATTGTGAGGGTTAAAT
1 GATAAGTATTCTTCAATTGTGAGGGTTAAAT
15920446 CTTATAGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (34 bp):
GATAAGTATTCTTCAATTGTGAGGGTTAAATAAG
Found at i:15920970 original size:299 final size:292
Alignment explanation
Indices: 15920411--15921002 Score: 934
Period size: 299 Copynumber: 2.0 Consensus size: 292
15920401 GAGGGTTAAA
15920411 TAAGGATAAGTATTCTTCAATTGTGAGGGTTAAATCTTATAGGTTAAACATAAAACACCGATAAG
1 TAAGGATAAGTATTCTTCAATTGTGAGGGTTAAATCTTATAGGTTAAACATAAAACACCGATAAG
*
15920476 ACAGATCTCAAAACATATACAACCCTAACTAGTACCTCATCAATCTTTAGCGACAGGAGCAGTGC
66 ACAGATCTCAAAACATATACAACCCTAACTAGTACCTCATCAATCTTTAACGACAGGAGCAGTGC
*
15920541 CATATCCTTATATTTCTTCAAGAAAAACTCCTTTTTTTCTACTCTATTGCCATATGGTTTCCAAC
131 CATATCCTTATATTTCTTCAAGAAAAACTCCTTTTTTTCTACACTATTGCCATATGGTTTCCAAC
*
15920606 TTGAATACATCATTTTGACTCAAATCCACATGCACCAATTATGAAAGTGTAGAAATATAACCAAC
196 TTGAATACATCATTTTGACTCAAATCCACATGCACCAATTATGAAAGTGTAGAAACATAACCAAC
15920671 CCCTAAACAATACCCTTCTTTTCCTTAAGTGT
261 CCCTAAACAATACCCTTCTTTTCCTTAAGTGT
* * *
15920703 TAAGGATAAGTATTCTTCAATTGTGAGGGTTAAATCTTATAGGTTGATCATAAAACACTGATAAG
1 TAAGGATAAGTATTCTTCAATTGTGAGGGTTAAATCTTATAGGTTAAACATAAAACACCGATAAG
** *
15920768 ATGGATCTCAAAAC-TATACATAGCCCTAACTAGTACCTCATCAATCTTTAACGATAGGAGCAGT
66 ACAGATCTCAAAACATATACA-A-CCCTAACTAGTACCTCATCAATCTTTAACGACAGGAGCAGT
* *
15920832 GCCATATCCTTATATTTCTTCAAGAAAGACTCCCTTTTTTTCTATTTCCCACTGTTGCCATATGG
129 GCCATATCCTTATATTTCTTCAAGAAAAACT-CCTTTTTTTCTA-----CACTATTGCCATATGG
* * * *
15920897 TTTCCAACTTGACTACATCATTTTGACTCAAATCCACATGCAGCAATTGTGGAAGTGTAGAAACA
188 TTTCCAACTTGAATACATCATTTTGACTCAAATCCACATGCACCAATTATGAAAGTGTAGAAACA
* * * *
15920962 TAACCAACCCTTAAACAATACCTTTCTTTTCGTTAGGTGT
253 TAACCAACCCCTAAACAATACCCTTCTTTTCCTTAAGTGT
15921002 T
1 T
15921003 TTTTGATCGG
Statistics
Matches: 273, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
291 6 0.02
292 75 0.27
293 69 0.25
294 12 0.04
299 111 0.41
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (292 bp):
TAAGGATAAGTATTCTTCAATTGTGAGGGTTAAATCTTATAGGTTAAACATAAAACACCGATAAG
ACAGATCTCAAAACATATACAACCCTAACTAGTACCTCATCAATCTTTAACGACAGGAGCAGTGC
CATATCCTTATATTTCTTCAAGAAAAACTCCTTTTTTTCTACACTATTGCCATATGGTTTCCAAC
TTGAATACATCATTTTGACTCAAATCCACATGCACCAATTATGAAAGTGTAGAAACATAACCAAC
CCCTAAACAATACCCTTCTTTTCCTTAAGTGT
Found at i:15922682 original size:15 final size:15
Alignment explanation
Indices: 15922647--15922684 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
15922637 TCATGTCCTA
15922647 TTATTTTTATTATTT
1 TTATTTTTATTATTT
15922662 TATATTTTTA-TATTT
1 T-TATTTTTATTATTT
15922677 GTTATTTT
1 -TTATTTT
15922685 AACTAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTATTTTTATTATTT
Found at i:15922937 original size:19 final size:19
Alignment explanation
Indices: 15922902--15923020 Score: 61
Period size: 19 Copynumber: 6.4 Consensus size: 19
15922892 AGATTTTACT
**
15922902 TAGGGTTTAGGAATTCACC
1 TAGGGTTTAGGGTTTCACC
*
15922921 TAGGGTTTAGGGTTTCAAC
1 TAGGGTTTAGGGTTTCACC
**
15922940 TAGAATTTTA-GGTTT----
1 TAG-GGTTTAGGGTTTCACC
* * *
15922955 TATGGTTTAGGGTGTCACT
1 TAGGGTTTAGGGTTTCACC
*
15922974 TAGGGCTTTGGGGTTTCACC
1 TAGGG-TTTAGGGTTTCACC
* *
15922994 TAAGGTTTCA-GTTTTCACC
1 TAGGGTTT-AGGGTTTCACC
*
15923013 TAGAGTTT
1 TAGGGTTT
15923021 CATTTAAGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 16
0.69 0.17 0.15
Matches are distributed among these distances:
14 4 0.05
15 6 0.08
19 45 0.61
20 19 0.26
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40
Consensus pattern (19 bp):
TAGGGTTTAGGGTTTCACC
Found at i:15923272 original size:13 final size:14
Alignment explanation
Indices: 15923247--15923280 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
15923237 TTATTATTAC
15923247 TTATTTATGTTTTA
1 TTATTTATGTTTTA
15923261 TTATTT-TGTTTTA
1 TTATTTATGTTTTA
*
15923274 TCATTTA
1 TTATTTA
15923281 ATAATTCTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.71
Consensus pattern (14 bp):
TTATTTATGTTTTA
Found at i:15923442 original size:16 final size:17
Alignment explanation
Indices: 15923429--15923465 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
15923419 TGCATAAAGC
15923429 ATAAAAT-ACATAAAAA
1 ATAAAATCACATAAAAA
*
15923445 ATAAAATCACAT-CAAA
1 ATAAAATCACATAAAAA
15923461 ATAAA
1 ATAAA
15923466 TTAAAGCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.70, C:0.11, G:0.00, T:0.19
Consensus pattern (17 bp):
ATAAAATCACATAAAAA
Found at i:15924636 original size:35 final size:35
Alignment explanation
Indices: 15924544--15924647 Score: 136
Period size: 35 Copynumber: 2.9 Consensus size: 35
15924534 TATTTCCAGT
* * *
15924544 TTCTGCTGCAAAAAATTCTGGTCTATATTTTTAGG
1 TTCTGCTGAAAAAAATTCTGGTCTATGTTTTCAGG
* *
15924579 TTCTGCTGCAAAAAAAAATCTGGTCTTTGTTTTCAGG
1 TTCTGCTG--AAAAAAATTCTGGTCTATGTTTTCAGG
*
15924616 TTCTGCTGAAAAAAATTCTGGTCTGTGTTTTC
1 TTCTGCTGAAAAAAATTCTGGTCTATGTTTTC
15924648 TGCTGCAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
35 30 0.50
37 30 0.50
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.41
Consensus pattern (35 bp):
TTCTGCTGAAAAAAATTCTGGTCTATGTTTTCAGG
Found at i:15925150 original size:27 final size:27
Alignment explanation
Indices: 15925120--15925173 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
15925110 CTTTACATTA
*
15925120 TTATTTTTTTAATTATAATTATAATTT
1 TTATATTTTTAATTATAATTATAATTT
* * *
15925147 TTATATTTTTATTTTTATTTATAATTT
1 TTATATTTTTAATTATAATTATAATTT
15925174 ATAATTTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (27 bp):
TTATATTTTTAATTATAATTATAATTT
Found at i:15925169 original size:18 final size:18
Alignment explanation
Indices: 15925146--15925199 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
15925136 AATTATAATT
15925146 TTTATATTTTTATTTTTA
1 TTTATATTTTTATTTTTA
* *
15925164 TTTATA-ATTTATAATTTA
1 TTTATATTTTTAT-TTTTA
*
15925182 TATATATTATTTATTTTT
1 TTTATATT-TTTATTTTT
15925200 TTATGACCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
17 5 0.18
18 15 0.54
19 3 0.11
20 5 0.18
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTATATTTTTATTTTTA
Found at i:15925180 original size:20 final size:20
Alignment explanation
Indices: 15925125--15925195 Score: 57
Period size: 20 Copynumber: 3.9 Consensus size: 20
15925115 CATTATTATT
*
15925125 TTTTTAATTATAA-TTATAA
1 TTTTTATTTATAATTTATAA
15925144 TTTTTA--TAT--TTT-T-A
1 TTTTTATTTATAATTTATAA
15925158 TTTTTATTTATAATTTATAA
1 TTTTTATTTATAATTTATAA
* * *
15925178 TTTATATATATTATTTAT
1 TTTTTATTTATAATTTAT
15925196 TTTTTTATGA
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
14 7 0.17
15 1 0.02
16 5 0.12
17 3 0.07
18 3 0.07
19 7 0.17
20 16 0.38
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTATTTATAATTTATAA
Found at i:15925191 original size:27 final size:27
Alignment explanation
Indices: 15925138--15925195 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
15925128 TTAATTATAA
* * *
15925138 TTATAATTTTTATATTTTTATTTTTAT
1 TTATAATTTATATATTTATATTATTAT
15925165 TTATAATTTATA-ATTTATATATATTAT
1 TTATAATTTATATATTTATAT-TATTAT
15925192 TTAT
1 TTAT
15925196 TTTTTTATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (27 bp):
TTATAATTTATATATTTATATTATTAT
Found at i:15925722 original size:128 final size:128
Alignment explanation
Indices: 15925384--15925944 Score: 472
Period size: 129 Copynumber: 4.4 Consensus size: 128
15925374 AGGTATACAA
* * * * * * *
15925384 AGGGCATAATAGTCAATGTGGCCACATGTCAATTTCTTATCATATAA-GGAAAACAGTATTTTGG
1 AGGGCATAATAGTCAATTTGGTCACATGCCAATTTCTAATCATATAATGG-AAA-GGCATTTTAG
* * * * *
15925448 TAATTTCATT-----TTATTTAGTAAATAATTATAAGAT-AAGGGGTATTTTTTGGACTTTTGAT
64 TAATTTC-TTAAGGATTATTTAGTAAATAATTATAAG-TGAAGGGGTA-TTTTCGTAATTATGGT
*
15925507 ATT
126 ATG
* * * * * *
15925510 AAGGCATAATAGTCAATTT-GACAACATGTCAATTTCCT-GTCATAAAATGGAAAGGACATTTTT
1 AGGGCATAATAGTCAATTTGGTC-ACATGCCAATTT-CTAATCATATAATGGAAAGG-CATTTTA
*
15925573 GTAATTTCTTAAGGGATTATTTTG-AAATTAATTATAAGTGAAGGGGTATTTTCGTAATTATGGT
63 GTAATTTCTTAA-GGATTATTTAGTAAA-TAATTATAAGTGAAGGGGTATTTTCGTAATTATGGT
15925637 ATG
126 ATG
* * ** *
15925640 AGGGCATAATAATCCATTTGGAT-AGGTGCCAATTT-T-ATCATATCATGGAAAGTGCATTTTAG
1 AGGGCATAATAGTCAATTTGG-TCACATGCCAATTTCTAATCATATAATGGAAAG-GCATTTTAG
* * *
15925702 TAACTTGTTGAAGGATTATTTAGTAAATAATTATAAGAT-AAGTGGTATTTTCGTAATTATGGTA
64 TAATTTCTT-AAGGATTATTTAGTAAATAATTATAAG-TGAAGGGGTATTTTCGTAATTATGGTA
15925766 TG
127 TG
* * *
15925768 AGAGCATAATAGTCTATTTGGTCACATGTCAATTTCTAATCATATAAT-GAAAGG-ATATTGTCA
1 AGGGCATAATAGTCAATTTGGTCACATGCCAATTTCTAATCATATAATGGAAAGGCAT-TT-T-A
* * * * * *
15925831 -TAATTTCATAGGAGATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTCATAATTATGGTA
63 GTAATTTCTTAAG-GATTATTTAGTAAATAATTATAAGTGAAGGGGTATTTTCGTAATTATGGTA
15925895 TG
127 TG
* * * *
15925897 AGGGCATAATAGTCAATTTGGTTACATGTCAATTTTTTATCATATAAT
1 AGGGCATAATAGTCAATTTGGTCACATGCCAATTTCTAATCATATAAT
15925945 TTTCTAGTGG
Statistics
Matches: 358, Mismatches: 51, Indels: 49
0.78 0.11 0.11
Matches are distributed among these distances:
125 5 0.01
126 52 0.15
127 7 0.02
128 106 0.30
129 110 0.31
130 52 0.15
131 26 0.07
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (128 bp):
AGGGCATAATAGTCAATTTGGTCACATGCCAATTTCTAATCATATAATGGAAAGGCATTTTAGTA
ATTTCTTAAGGATTATTTAGTAAATAATTATAAGTGAAGGGGTATTTTCGTAATTATGGTATG
Found at i:15925932 original size:257 final size:260
Alignment explanation
Indices: 15925458--15925941 Score: 615
Period size: 257 Copynumber: 1.9 Consensus size: 260
15925448 TAATTTCATT
* * * *
15925458 TTATTTAGTAAATAATTATAAGATAAGGGGTATTTTTTGGACTTTTGATATTAAGGCATAATAGT
1 TTATTTAGTAAATAATTATAAGATAAGGGGTATTTTTCGGAATTATGATATGAAGGCATAATAGT
* * ** *
15925523 CAATTTGACAACATGTCAATTTCCTGTCATAAAATGGAAAGGACATTTTTGTAATTTCTTAAGGG
66 CAATTTGACAACATGTCAATTTCCTATCATAAAATGGAAAGGACATTGTCATAATTTCATAAGGG
* * * *
15925588 ATTATTTTGAAATTAATTATAAGTGAAGGGGTATTTTCGTAATTATGGTATGAGGGCATAATAAT
131 ATTATTTAGAAATTAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATGAGGGCATAATAAT
* **
15925653 CCATTTGGATAGGTGCCAA-TTTTATCATATCATGGAAAGTGCATTTTAGTAACTTGTTGAAGGA
196 CAATTTGGATACATGCCAATTTTTATCATATCATGGAAAGTGCATTTTAGTAACTTGTTGAAGGA
* * *
15925717 TTATTTAGTAAATAATTATAAGATAAGTGGTA-TTTTCGTAATTATGGTATG-AGAGCATAATAG
1 TTATTTAGTAAATAATTATAAGATAAGGGGTATTTTTCGGAATTATGATATGAAG-GCATAATAG
* * * *
15925780 TCTATTTGGTC-ACATGTCAATTT-CTAATCATATAAT-GAAAGGATATTGTCATAATTTCAT-A
65 TCAATTT-GACAACATGTCAATTTCCT-ATCATAAAATGGAAAGGACATTGTCATAATTTCATAA
*
15925841 GGAGATTATTTAGTAAA-TAATTATTAGAGAAAGGGTATTTTCATAATTATGGTATGAGGGCATA
128 GG-GATTATTTAG-AAATTAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATGAGGGCATA
* * *
15925905 ATAGTCAATTTGGTTACATGTCAATTTTTTATCATAT
191 ATAATCAATTTGGATACATGCCAA-TTTTTATCATAT
15925942 AATTTTCTAG
Statistics
Matches: 191, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
256 3 0.02
257 93 0.49
258 51 0.27
259 44 0.23
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (260 bp):
TTATTTAGTAAATAATTATAAGATAAGGGGTATTTTTCGGAATTATGATATGAAGGCATAATAGT
CAATTTGACAACATGTCAATTTCCTATCATAAAATGGAAAGGACATTGTCATAATTTCATAAGGG
ATTATTTAGAAATTAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATGAGGGCATAATAAT
CAATTTGGATACATGCCAATTTTTATCATATCATGGAAAGTGCATTTTAGTAACTTGTTGAAGGA
Found at i:15926032 original size:109 final size:110
Alignment explanation
Indices: 15925844--15926053 Score: 305
Period size: 109 Copynumber: 1.9 Consensus size: 110
15925834 TTTCATAGGA
* * * *
15925844 GATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTCATAATTATGGTATGAGGGCATAATAG
1 GATTATTTAGTAAATAATTATAAAAGAAAGGGTATTTTCATAATTATGATATGAGGGCACAATAG
* * *
15925909 TCAATTTGGTTACATGTCAATTTTTTATCATATAATTTTCTAGTG
66 TCAATTTAGCTACATGTCAATTTCTTATCATATAATTTTCTAGTG
* **
15925954 GATTATTTAGTAAATAATTATAAAAGAAGGGGT-TTTTTGTAATTATGATATGAGGGCACAATAG
1 GATTATTTAGTAAATAATTATAAAAGAAAGGGTATTTTCATAATTATGATATGAGGGCACAATAG
* *
15926018 TCCATTTAGCTACATGTCGATTTCTTATCATATAAT
66 TCAATTTAGCTACATGTCAATTTCTTATCATATAAT
15926054 GGAAATGGCA
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
109 58 0.66
110 30 0.34
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (110 bp):
GATTATTTAGTAAATAATTATAAAAGAAAGGGTATTTTCATAATTATGATATGAGGGCACAATAG
TCAATTTAGCTACATGTCAATTTCTTATCATATAATTTTCTAGTG
Found at i:15926134 original size:239 final size:239
Alignment explanation
Indices: 15925714--15926146 Score: 583
Period size: 239 Copynumber: 1.8 Consensus size: 239
15925704 ACTTGTTGAA
* * * * *
15925714 GGATTATTTAGTAAATAATTATAAGATAAGTGGTATTTTCGTAATTATGGTATGAGAGCATAATA
1 GGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCGTAATTATGATATGAGAGCACAATA
* *
15925779 GTCTATTTGGTCACATGTCAATTTCTAATCATATAATGAAAGGATATTGTCATAATTTCATAGGA
66 GTCCATTTGCTCACATGTCAATTTCTAATCATATAATGAAAGGATATTGTCATAATTTCATAGGA
* * * *
15925844 GATTATTTAGTAAATAATTATTAGAGAAAGGGTATTTTCATAATTATGGTATGAGGGCATAATAG
131 GATTATTTACTAAATAATTATTAGAGAAAGGCTATTTTCATAATCATGGTATAAGGGCATAATAG
15925909 TCAATTTGGTTACATGTCAATTTTTTATCATATAATTTTCTAGT
196 TCAATTTGGTTACATGTCAATTTTTTATCATATAATTTTCTAGT
* *
15925953 GGATTATTTAGTAAATAATTATAAAAGAAGGGGT-TTTTTGTAATTATGATATGAGGGCACAATA
1 GGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCGTAATTATGATATGAGAGCACAATA
* * **
15926017 GTCCATTTAGCT-ACATGTCGATTTCTTATCATATAATGGAAATGGCAT-TT-TGGTAATTTCAT
66 GTCCATTT-GCTCACATGTCAATTTCTAATCATATAAT-GAAA-GG-ATATTGTCATAATTTCAT
**
15926079 ATGG-GATTATTTACTAAATAATTA-TA-AGATAAGAGCTATTTTTGTAATCATGGTATAAGGGC
127 A-GGAGATTATTTACTAAATAATTATTAGAGA-AAG-GCTATTTTCATAATCATGGTATAAGGGC
15926141 ATAATA
189 ATAATA
15926147 TTCCATTTCA
Statistics
Matches: 168, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
237 3 0.02
238 61 0.36
239 96 0.57
240 6 0.04
241 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.39
Consensus pattern (239 bp):
GGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCGTAATTATGATATGAGAGCACAATA
GTCCATTTGCTCACATGTCAATTTCTAATCATATAATGAAAGGATATTGTCATAATTTCATAGGA
GATTATTTACTAAATAATTATTAGAGAAAGGCTATTTTCATAATCATGGTATAAGGGCATAATAG
TCAATTTGGTTACATGTCAATTTTTTATCATATAATTTTCTAGT
Found at i:15926415 original size:130 final size:129
Alignment explanation
Indices: 15925955--15927602 Score: 1022
Period size: 130 Copynumber: 12.8 Consensus size: 129
15925945 TTTCTAGTGG
* ** * * *
15925955 ATTATTTAGTAAATAATTATAA-AAGAAGGGGT-TTTTTGTAATTATGATATGAGGGCACAATAG
1 ATTATTTAGTAAATAATTATAAGAA-AAGAGGTATTTTCATAATTATGGTATGAGGGCATAATAT
* * * *
15926018 TCCATTTAGCTACATGTCGATTTCTTATCATATAATGGAAATGGCATTTTGGTAATTTCATATGG
65 TCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGATAATTTCATA-GG
*
15926083 G
129 A
* * * ** * *
15926084 ATTATTTACTAAATAATTATAAGATAAGAGCTATTTTTGTAATCATGGTATAAGGGCATAATATT
1 ATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATATT
** * * * ** * * *
15926149 CCATTTCACCACAT-TCAACTTCTTATCATGTAATGGAAAGGATATTTTAATAATTTAATAAGA
66 CCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGATAATTTCATAGGA
* * * * *
15926212 GATTATTTAAT-AATAATTATAAGAAAAAAGGTATTTTTATAATTATGGTATGGGGGAATAAGT-
1 -ATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTCATAATTATGGTATGAGGGCATAA-TA
* * * * * *
15926275 GTCCATTTGGCTACAAGTCAGTTTCTTATCATGTAATGTAAAGGGCATTTTGTTAATTTCATAGG
64 TTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGATAATTTCATAGG
15926340 CA
129 -A
* * ** *
15926342 ATTCTTTAGTAAATAATTATAAGAAAAGAGATATTTTCATAATTATTATATGAAGGCATAATATT
1 ATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATATT
* * * * * * * *
15926407 CAAGTTGGCCATATGTAAATTTCTTAACATATAATGGAAATGCCATTTTGATAATTTTC-TAGTG
66 CCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGATAA-TTTCATAG-G
*
15926471 G
129 A
* ** * *
15926472 ATTATTTAGTAAACAATTATAAGACCTAG-GTTATTTTCATAATTATGGCATGAGGGCATAATAT
1 ATTATTTAGTAAATAATTATAAGA-AAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATAT
* *
15926536 TCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATTTT-AGTAATTTC-TTGA
65 TCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGA-TAATTTCATAG-
15926599 GA
128 GA
* * * * *
15926601 GATGT-TTTAGTAAATAATTATATGAGAATG-GTTATTTTCATAATTACGGTATAAGGGCATAAT
1 -AT-TATTTAGTAAATAATTATAAGA-AAAGAGGTATTTTCATAATTATGGTATGAGGGCATAAT
* * * * * * *
15926664 AGTCCATATGGCCT-CATGTCAATTTCTTAACACATTATAGAAAGAGCATTTT-AGTAATTTCAT
63 ATTCCATTTGG-CTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGA-TAATTTCAT
*
15926727 AGGGG
126 A-GGA
* * * * * * * *
15926732 ATTATTTAGTAAATAAATATATGAGAAGGGGCATTTTCATAATTATTGTTTGAGGGCATACTAGT
1 ATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATA-T
* * * **** *
15926797 T-AATGT-GCCACATGTCAATTTCTTATCATATAATGGAAACAATATTTTGGTAATTTCAT----
65 TCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGATAATTTCATAGGA
* * * * ** * * * **
15926856 ATTAGTTAGTAAATAATTATAAGAGAAGGGGCATTTTTGTAATTATGATATTAAGGCATAATGGT
1 ATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATATT
* ** * * * *
15926921 CAATTTGG-TAACACATCAATTTCTTATCATATAATGGAAATGGTATTTTTG-GAATTTCTTAGG
66 CCATTTGGCT-ACATGTCAATTTCTTATCATATAATGGAAAGGGCA-TTTTGATAATTTCATAGG
15926984 A
129 A
* ** * ** * * * * *
15926985 GATTATTTAG-AAATTAATTATATGCGAAG-GAGAATTTTTGTCATTATGGTTTAAAGGCATAAC
1 -ATTATTTAGTAAA-TAATTATAAGAAAAGAG-GTATTTTCATAATTATGGTATGAGGGCATAAT
* * * * *
15927048 ATTCCATTTGGCAACATGTCAATTTCTTATTATAGAATGGAATGGGCATTTT-AGTAATTTCTTA
63 ATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGA-TAATTTCATA
*
15927112 TGA
127 GGA
* * * * * * * *
15927115 GATTATTTATTAAATAATTACAAGAGAATG-GGTATTTTCGTAGTTATGGTATAAAGGTATAATA
1 -ATTATTTAGTAAATAATTATAAGA-AAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATA
* * * * * **
15927179 GTCAACTTGGCCACATGTCAATTTC-TACTCATATAATGGAAATGATATTCTT-ATAATTTCATA
64 TTCCATTTGGCTACATGTCAATTTCTTA-TCATATAATGGAAAGGGCATT-TTGATAATTTCATA
*
15927242 AGA
127 GGA
* * * * *
15927245 GATAATTTATTAAATAATTATTAGAGAAA-AGGTATTTTCATAATTATGGTACGAGGGAATAATA
1 -ATTATTTAGTAAATAATTATAAGA-AAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATA
* * * * * * * * * * * *
15927309 GTT-AATTT-GCCACATATTAAGTTCTTATCATATCATGAAAACGGTATTTTGGTTATTTAATAA
64 -TTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGATAATTTCAT-A
*
15927372 GGG
127 GGA
* * * * * * * *
15927375 ATTATTTAG-GAATAATTATAAGAGAGGGGGTATTTTCATAATTATGGCATGAGGGAATAACAGT
1 ATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATATT
* * * * * * * ** * *
15927439 CCATTAGCCCACATGTCAATTTCTTATCATGTAATAGAAATGG-TTTTTGGGAAATTCATAGGGG
66 CCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGATAATTTCATA-GGA
** * * ** * ** * * * *
15927503 ATTATTTAGTTGATAATTATTAGAGAAGATATATTTTCGTTGTTATGATATAAGAGCATAATAGT
1 ATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATATT
* * * *
15927568 ACATTTGGAC-ACATGTCACTTTCTCATCGTATAAT
66 CCATTTGG-CTACATGTCAATTTCTTATCATATAAT
15927603 TGAATGCGCA
Statistics
Matches: 1192, Mismatches: 276, Indels: 102
0.76 0.18 0.06
Matches are distributed among these distances:
123 1 0.00
124 55 0.05
125 38 0.03
126 5 0.00
127 3 0.00
128 126 0.11
129 319 0.27
130 621 0.52
131 23 0.02
132 1 0.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (129 bp):
ATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTCATAATTATGGTATGAGGGCATAATATT
CCATTTGGCTACATGTCAATTTCTTATCATATAATGGAAAGGGCATTTTGATAATTTCATAGGA
Found at i:15926583 original size:260 final size:254
Alignment explanation
Indices: 15925940--15929173 Score: 1372
Period size: 260 Copynumber: 12.6 Consensus size: 254
15925930 TTTTTATCAT
** *
15925940 ATAATTTTCTAGTGGATTATTTAGTAAATAATTATAA-AAGAAGGGGT-TTTTTGTAATTATGAT
1 ATAATTTTCTAG-GGATTATTTAGTAAATAATTATAAGAA-AA-GGGTATTTTCATAATTATGGT
* * * *
15926003 ATGAGGGCACAATAGTCCATTTAGCTACATGTCGATTTCTTATCATATAATGGAAAT-GGCATTT
63 ATGAGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGG-AATGGGCATTT
* * * * * *
15926067 TGGTAATTTCATATGGGATTATTTACTAAATAATTATAAGATAAGAGCTATTTTTGTAATCATGG
127 T-GTAATTTCATA-GGAATTATTTAGTAAATAATTATAAGAAAAG-GGTATTTTCGTAATTATGG
* * ** * * *
15926132 TATAAGGGCATAATATTCCATTTCACCACAT-TCAACTTCTTATCATGTAATGGAAA-GGATATT
189 TATAA-GGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGG-CATT
*
15926195 TTA
252 TTG
** * * * *
15926198 ATAATTTAATAAGAGATTATTTAAT-AATAATTATAAGAAAAAAGGTATTTTTATAATTATGGTA
1 ATAATTTTCT-AGGGATTATTTAGTAAATAATTATAAG-AAAAGGGTATTTTCATAATTATGGTA
* * * * * * * *
15926262 TGGGGGAATAAGT-GTCCATTTGGCTACAAGTCAGTTTCTTATCATGTAATGTAAAGGGCATTTT
64 TGAGGGCATAA-TATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATTTT
* * * **
15926326 GTTAATTTCATAGGCAATTCTTTAGTAAATAATTATAAGAAAAGAGATATTTTCATAATTATTAT
128 G-TAATTTCATAGG-AATTATTTAGTAAATAATTATAAGAAAAG-GGTATTTTCGTAATTATGGT
* * * * * *
15926391 ATGAAGGCATAATATTCAAGTTGGCCATATGTAAATTTCTTAACATATAATGGAAATGCCATTTT
190 AT-AAGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCATTTT
15926456 G
254 G
* ** * *
15926457 ATAATTTTCTAGTGGATTATTTAGTAAACAATTATAAGACCTAGGTTATTTTCATAATTATGGCA
1 ATAATTTTCTAG-GGATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCATAATTATGGTA
15926522 TGAGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATTTTA
64 TGAGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATTTT-
* * * * * *
15926587 GTAATTTC-TTGAGAGATGT-TTTAGTAAATAATTATATGAGAATGGTTATTTTCATAATTACGG
128 GTAATTTCATAG-GA-AT-TATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCGTAATTATGG
* * * * * * *
15926650 TATAAGGGCATAATAGTCCATATGGCCTCATGTCAATTTCTTAACACATTATAGAAA-GAGCATT
189 TATAA-GGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATG-GCATT
15926714 TT-
252 TTG
* * * * *
15926716 AGTAA-TTTCATAGGGGATTATTTAGTAAATAAATATATGAGAAGGGGCATTTTCATAATTATTG
1 A-TAATTTTC-TA-GGGATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCATAATTATGG
* * * * * *****
15926780 TTTGAGGGCATACTAGTT-AATGT-GCCACATGTCAATTTCTTATCATATAATGGAAACAATATT
62 TATGAGGGCATAATA-TTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATT
* * * * *
15926843 TTGGTAATTTCAT----ATTAGTTAGTAAATAATTATAAGAGAAGGGGCATTTTTGTAATTATGA
126 TT-GTAATTTCATAGGAATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCGTAATTATGG
* ** ** *
15926904 TATTAAGGCATAATGGTCAATTTGGTAACACATCAATTTCTTATCATATAATGGAAATGGTATTT
189 TA-TAAGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCA-TT
15926969 TTG
252 TTG
* * ** * ** *
15926972 -GAA-TTTCTTAGGAGATTATTTAG-AAATTAATTATATGCGAAGGAGAATTTTTGTCATTATGG
1 ATAATTTTC-TAGG-GATTATTTAGTAAA-TAATTATAAGAAAAGG-GTATTTTCATAATTATGG
* * * * * * *
15927034 TTTAAAGGCATAACATTCCATTTGGCAACATGTCAATTTCTTATTATAGAATGGAATGGGCATTT
62 TATGAGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATTT
* * * * * *
15927099 TAGTAATTTCTTATGAGATTATTTATTAAATAATTACAAGAGAATGGGTATTTTCGTAGTTATGG
127 T-GTAATTTCATAGGA-ATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCGTAATTATGG
* * **
15927164 TATAAAGGTATAATAGTCAACTTGGCCACATGTCAATTTC-TACTCATATAATGGAAATGATATT
189 TAT-AAGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTA-TCATATAATGGAAATGGCATT
15927228 CTT-
252 -TTG
* * *
15927231 ATAA-TTTCATAAGAGATAATTTATTAAATAATTATTAGAGAAAA-GGTATTTTCATAATTATGG
1 ATAATTTTC-T-AGGGATTATTTAGTAAATAATTA-TA-AGAAAAGGGTATTTTCATAATTATGG
* * * * * * * * * ** *
15927294 TACGAGGGAATAATAGTT-AATTT-GCCACATATTAAGTTCTTATCATATCATGAAAACGGTATT
62 TATGAGGGCATAATA-TTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATT
* * * * ** *
15927357 TTGGTTATTTAATAAGGGATTATTTAG-GAATAATTATAAGAGAGGGGGTATTTTCATAATTATG
126 TT-GTAATTTCAT-AGGAATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCGTAATTATG
* * * * * * * * * *
15927421 GCATGAGGGAATAACAGTCCATTAGCCCACATGTCAATTTCTTATCATGTAATAGAAATGG-TTT
188 GTAT-AAGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCATT
15927485 TTG
252 TTG
** * ** * * ** * ** *
15927488 GGAA-ATTCATAGGGGATTATTTAGTTGATAATTATTAGAGAAGATATATTTTCGTTGTTATGAT
1 ATAATTTTC-TA-GGGATTATTTAGTAAATAATTATAAGAAAAG-GGTATTTTCATAATTATGGT
* * * * * * * * *
15927552 ATAAGAGCATAATAGTACATTTGGAC-ACATGTCACTTTCTCATCGTATAATTGAATGCGCAGTT
63 ATGAGGGCATAATATTCCATTTGG-CTACATGTCAATTTCTTATCATATAATGGAATGGGCA-TT
* * * * * ** *
15927616 TTGAAATCTT-GTAAGGGATTCTTT--TAATATATATTATTAGTGAAAAACGTATTTACGTAATT
126 TTGTAAT-TTCAT-AGGAATTATTTAGTAA-ATA-ATTA-TA-AGAAAAGGGTATTTTCGTAATT
* * * ** * * *
15927678 -T--CATAGAGG-ATTATTTAGTAAATAATTATCAGAGAAAAATGT--ATTT-TTGT-A-ATTAT
185 ATGGTATA-AGGCA-TA-ATAGT---CAATT-T--G-GCCACATGTCAATTTCTTATCATATAAT
* * * **
15927734 GGTACGACGACATAAT-
240 GG-A-AATGGCATTTTG
* * ** * ** * * * **
15927750 AGTCCATTTAGCTACTTG-TCAATTTCTTACCAT-ATAAT-GGAAAA-GGTATTTTGGTAATT-T
1 A-T-AATTT-TCTA-GGGAT-TATTTAGTA-AATAATTATAAGAAAAGGGTATTTTCATAATTAT
** * * * * *
15927810 CATA-GAGGG-------TT--ATTTAG-TA-A-AT-AA----TTAT-A-A-GA--GAAAGGGTAT
60 GGTATGAGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCAT
* * * * * *
15927852 TTTCATAATTTCA-AGGAGATTATTTACTAAATAAATATTAGAAAAAAGGTATTTTTGTAATTAT
125 TTT-GTAATTTCATAGGA-ATTATTTAGTAAATAATTATAAG-AAAAGGGTATTTTCGTAATTAT
* * * * * ****
15927916 GGTACGAGGGCATAATAGTCAATTTAGCTACATGTCAATTTTTTATCATATAATGGAAATTATGT
187 GGTA-TAAGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCAT
*
15927981 TTTC
251 TTTG
* * ** *
15927985 ATAA-TTTCATAGGAGATTATTAAGTAAATAATTATAAGAGAAGGGATATTTTTGTAATTATGAT
1 ATAATTTTC-TAGG-GATTATTTAGTAAATAATTATAAGAAAAGGG-TATTTTCATAATTATGGT
* * * * * * *
15928049 ATGA-GACAATAATAATCAATTTGGCGACATGTAAATTTCCTA-CATATAATGAAAAT-GGCATT
63 ATGAGGGC-ATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATG-GAATGGGCATT
* * * * * * *
15928111 TTGATAATTTTCTAAAGG-ATTCA-TTACTAAATAAATATAAGAGAAGGGGTATTTTTGGAATAA
126 TTG-TAA-TTTC-ATAGGAATT-ATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCGTAATTA
* * * * * *
15928174 AGGTATAATGGCATAATAGCCCATTTGGTCACATGTCAATTTCTTATCATATAATGAAAAAGGTC
186 TGGTATAA-GGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGG-C
15928239 -TTTT-
249 ATTTTG
* * * * *
15928243 AGTCA-TTTCTTAAGGGATTTTTTACTTAATAATTATAAGAGAAGAGGTATTTTCATAATTATGG
1 A-TAATTTTC-T-AGGGATTATTTAGTAAATAATTATAAGAAAAG-GGTATTTTCATAATTATGG
* * * * * * ** *
15928307 TATGAAGGCATAATAGTCCATTTGACCACATGTTAATTTCTTATCATACAATGGAAACGGTATTT
62 TATGAGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATTT
* * * * * *
15928372 TAGAAATTTTATAGGCGATTACTTT-GTAAATAATTATAAGAGAAGGGTTATTTTCATAATTATT
127 T-GTAATTTCATAGG-AATTA-TTTAGTAAATAATTATAAGAAAAGGG-TATTTTCGTAATTATG
* * * * ** * * * *
15928436 ATTTAGGGGCATAATATTCAA-TAAGCCATATGTCAATTTCTTTTCATATAATGAAAATGGTATT
188 GTATA-AGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCATT
15928500 TTG
252 TTG
* * ** *
15928503 -TAATTTTATAGTGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGATA
1 ATAATTTTCTAG-GGATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCATAATTATGGTA
* * * ** * *
15928567 TTAGGG--------TCAATTTGGCAACACATAAATTTCTTATCATATAATGGAAAGGGCATTTTT
64 TGAGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCA-TTTT
* * * * * * * *
15928624 GTGATTTCTTAGGGGATTAATTA-AAAATTAATTATAAGCGAAAGGGTAATTTCATAATTATGGT
128 GTAATTTCATA-GGAATTATTTAGTAAA-TAATTATAAG-AAAAGGGTATTTTCGTAATTATGGT
* * * * * * *
15928688 ATGAGGCATAATAGTCCATTTGACCA-AGTGCCAATTTCTTATCATGTAATGCAAAAGGCA-TTT
190 ATAAGGCATAATAGTCAATTTGGCCACA-TGTCAATTTCTTATCATATAATGGAAATGGCATTTT
15928751 -
254 G
* * **
15928751 -T-AGTTTCTAGGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATA
1 ATAATTTTCTA-GGGATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCATAATTATGGTA
* ** * * * * * ** *
15928814 TGAGGGCATAATAGTGAATTTGGCTACACGTCAATTTTTTATCAAATAATGAAAAGAGTAATTTA
64 TGAGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATG-GGCATTTT
* * * *
15928879 GTAATTTTATAAAGG-GTTATTTTGTAAATAATTATAAGAGAAAGTGTATTTT-GTAATTATGGT
128 GTAATTTCAT--AGGAATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCGTAATTATGGT
* ** * ** * * * *
15928942 ATAGAAAGCATAATAGTTTATTTGGGCACATCCCAAATTCTAATCATATAATGGAAAGGGTATTT
190 AT--AAGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCA-TT
15929007 TTG
252 TTG
*
15929010 -TAA-TTTCATAGGAGATTATTTAGTAAATAATTATTAAAGAAAA-TGTATTTT-AGTAATTATG
1 ATAATTTTC-TAGG-GATTATTTAGTAAATAATTA-T-AAGAAAAGGGTATTTTCA-TAATTATG
* * * * * * * * * * ** *
15929071 GTATAATGACATAATAGTCTATTTAGG-TGCATGTCCATTTTTTACCATATAGTGGAAAAGACAT
61 GTATGAGGGCATAATATTCCATTT-GGCTACATGTCAATTTCTTATCATATAATGGAATGGGCAT
*
15929135 TTTGGTAATTTCATA-CAAGGTTATTTAGTAAATAATTAT
125 TTT-GTAATTTCATAGGAA--TTATTTAGTAAATAATTAT
15929174 GGTATGAGGT
Statistics
Matches: 2226, Mismatches: 549, Indels: 400
0.70 0.17 0.13
Matches are distributed among these distances:
231 9 0.00
232 14 0.01
233 10 0.00
234 11 0.00
235 20 0.01
236 32 0.01
237 18 0.01
238 16 0.01
239 8 0.00
240 3 0.00
241 1 0.00
243 3 0.00
244 1 0.00
246 5 0.00
247 62 0.03
248 4 0.00
249 23 0.01
250 108 0.05
251 16 0.01
253 12 0.01
254 149 0.07
255 127 0.06
256 58 0.03
257 85 0.04
258 348 0.16
259 411 0.18
260 576 0.26
261 40 0.02
262 22 0.01
263 6 0.00
264 7 0.00
265 18 0.01
266 3 0.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (254 bp):
ATAATTTTCTAGGGATTATTTAGTAAATAATTATAAGAAAAGGGTATTTTCATAATTATGGTATG
AGGGCATAATATTCCATTTGGCTACATGTCAATTTCTTATCATATAATGGAATGGGCATTTTGTA
ATTTCATAGGAATTATTTAGTAAATAATTATAAGAAAAGGGTATTTTCGTAATTATGGTATAAGG
CATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCATTTTG
Found at i:15927913 original size:52 final size:53
Alignment explanation
Indices: 15927790--15927913 Score: 144
Period size: 52 Copynumber: 2.4 Consensus size: 53
15927780 CATATAATGG
* * * * *
15927790 AAAAGGTATTTTGGTAATTTCATAGAGGGTTATTTAGTAAATAATTATAAGAG
1 AAAAGGTATTTTCGTAATTTCATAGAGGATTATTTACTAAATAAATATAAGAA
* * *
15927843 AAAGGGTATTTTCATAATTTCA-AG-GAGATTATTTACTAAATAAATATTAGAA
1 AAAAGGTATTTTCGTAATTTCATAGAG-GATTATTTACTAAATAAATATAAGAA
*
15927895 AAAAGGTATTTTTGTAATT
1 AAAAGGTATTTTCGTAATT
15927914 ATGGTACGAG
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
51 1 0.02
52 39 0.66
53 19 0.32
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.39
Consensus pattern (53 bp):
AAAAGGTATTTTCGTAATTTCATAGAGGATTATTTACTAAATAAATATAAGAA
Found at i:15927915 original size:182 final size:183
Alignment explanation
Indices: 15927664--15928036 Score: 502
Period size: 182 Copynumber: 2.0 Consensus size: 183
15927654 AGTGAAAAAC
* * * * *
15927664 GTATTTACGTAATTTCATAGAGGATTATTTAGTAAATAATTATCAGAGAAAAATGTATTTTTGTA
1 GTATTTTCATAATTTCATAGAGGATTATTTACTAAATAAATATCAGAGAAAAAGGTATTTTTGTA
* *
15927729 ATTATGGTACGACGACATAATAGTCCATTTAGCTACTTGTCAATTTCTTACCATATAATGGAAAA
66 ATTATGGTACGACGACATAATAGTCAATTTAGCTACATGTCAATTTCTTACCATATAATGGAAAA
* ** * *
15927794 GGTATTTTGGTAATTTCATA-GAGGGTTATTTAGTAAATAATTATAAGAGAAAGG
131 GATATTTTCATAATTTCATAGGA-GATTATTAAGTAAATAATTATAAGAG-AAGG
*
15927848 GTATTTTCATAATTTCA-AG-GAGATTATTTACTAAATAAATATTAGA-AAAAAGGTATTTTTGT
1 GTATTTTCATAATTTCATAGAG-GATTATTTACTAAATAAATATCAGAGAAAAAGGTATTTTTGT
* * * *
15927910 AATTATGGTACGAGGGCATAATAGTCAATTTAGCTACATGTCAATTTTTTATCATATAATGGAAA
65 AATTATGGTACGACGACATAATAGTCAATTTAGCTACATGTCAATTTCTTACCATATAATGGAAA
** *
15927975 TTATGTTTTCATAATTTCATAGGAGATTATTAAGTAAATAATTATAAGAGAAGG
130 AGATATTTTCATAATTTCATAGGAGATTATTAAGTAAATAATTATAAGAGAAGG
15928029 GATATTTT
1 G-TATTTT
15928037 TGTAATTATG
Statistics
Matches: 166, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
181 5 0.03
182 120 0.72
183 26 0.16
184 15 0.09
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (183 bp):
GTATTTTCATAATTTCATAGAGGATTATTTACTAAATAAATATCAGAGAAAAAGGTATTTTTGTA
ATTATGGTACGACGACATAATAGTCAATTTAGCTACATGTCAATTTCTTACCATATAATGGAAAA
GATATTTTCATAATTTCATAGGAGATTATTAAGTAAATAATTATAAGAGAAGG
Found at i:15928068 original size:130 final size:127
Alignment explanation
Indices: 15927849--15932011 Score: 1314
Period size: 130 Copynumber: 32.7 Consensus size: 127
15927839 AGAGAAAGGG
* * * *
15927849 TATTTTCATAATTTCA-AGGAGATTATTTACTAAATAAATATTAGAAAAAAGGTATTTTTGTAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAG-AGAAGGGTATTTTTGTAAT
* * * * *
15927913 TATGGTACGAGGGCATAATAGTCAATTTAGCTACATGTCAATTTTTTATCATATAATGGAAATTA
65 TATGATATGA-GGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAATGA
* * *
15927978 TGTTTTCATAATTTCATAGGAGATTATTAAGTAAATAATTATAAGAGAAGGGATATTTTTGTAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAAGGG-TATTTTTGTAAT
* * * * * * *
15928043 TATGATATGAGACAATAATAATCAATTTGGCGACATGTAAATTTCCTA-CATATAATGAAAATGG
65 TATGATATGAGGC-ATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAATGA
* * * * *
15928107 CATTTTGATAATTTTC-TA-AAGGATTCA-TTACTAAATAAATATAAGAGAAGGGGTATTTTTGG
1 TATTTTCATAA-TTTCATAGGA-GATT-ATTTACTAAATAATTATAAGAGAA-GGGTATTTTTGT
* * * * * * * *
15928169 AATAAAGGTATAATGGCATAATAGCCCATTTGGTCACATGTCAATTTCTTATCATATAATGAAAA
62 AATTATGATATGA-GGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAA
* *
15928234 AGG
125 TGA
* * * * * **
15928237 TCTTTT-AGTCATTTCTTAAGG-GATTTTTTACTTAATAATTATAAGAGAAGAGGTATTTTCATA
1 TATTTTCA-TAATTTCAT-AGGAGATTATTTACTAAATAATTATAAGAGAAG-GGTATTTTTGTA
* * * * *
15928300 ATTATGGTATGAAGGCATAATAGTCCATTTGACCACATGTTAATTTCTTATCATACAATGGAAAC
63 ATTATGATATG-AGGCATAATAGTCAATTTG-CCACATGTCAATTTCTTATCATATAATGGAAAT
*
15928365 GG
126 GA
* * * * **
15928367 TATTTT-AGAAATTTTATAGGCGATTACTTT-GTAAATAATTATAAGAGAAGGGTTATTTTCATA
1 TATTTTCA-TAATTTCATAGGAGATTA-TTTACTAAATAATTATAAGAGAAGGG-TATTTTTGTA
* * * * ** * * *
15928430 ATTATTATTTAGGGGCATAATATTCAATAAGCCATATGTCAATTTCTTTTCATATAATGAAAATG
63 ATTATGATAT-GAGGCATAATAGTCAATTTGCCACATGTCAATTTCTTATCATATAATGGAAATG
*
15928495 G
127 A
* * *
15928496 TATTTT-GTAATTTTATAGTG-GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAA
1 TATTTTCATAATTTCATAG-GAGATTATTTACTAAATAATTATAAGAGAA-GGGTATTTTTGTAA
* * ** * * *
15928559 TTATGATATTAGG-------GTCAATTTGGCAACACATAAATTTCTTATCATATAATGGAAAGGG
64 TTATGATATGAGGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAATGA
* ** * * * * * * * **
15928617 CATTTTTGTGATTTCTTAGGGGATTAATTA-AAAATTAATTATAAGCGAAAGGGTAATTTCATAA
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAA-TAATTATAAGAG-AAGGGTATTTTTGTAA
* * * * * *
15928681 TTATGGTATGAGGCATAATAGTCCATTTGACCA-AGTGCCAATTTCTTATCATGTAATGCAAAAG
64 TTATGATATGAGGCATAATAGTCAATTTG-CCACA-TGTCAATTTCTTATCATATAATGGAAATG
*
15928745 G
127 A
* * * * **
15928746 CA-TTT--TAGTTTC-TAGGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAA-GGGTATTTTTGTAAT
* * * * * * *
15928807 TATAATATGAGGGCATAATAGTGAATTTGGCTACACGTCAATTTTTTATCAAATAAT-GAAAAGA
65 TATGATATGA-GGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAATGA
* * ** *
15928871 GTAATTT-AGTAATTTTATAAAGG-G-TTATTTTGTAAATAATTATAAGAGAAAGTGTA-TTTTG
1 -TATTTTCA-TAATTTCAT--AGGAGATTATTTACTAAATAATTATAAGAG-AAGGGTATTTTTG
* * ** * ** * *
15928932 TAATTATGGTATAGAAAGCATAATAGTTTATTTGGGCACATCCCAAATTCTAATCATATAATGGA
61 TAATTATGATAT-G-AGGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGA
* *
15928997 AAGGG
123 AATGA
** * ** *
15929002 TATTTTTGTAATTTCATAGGAGATTATTTAGTAAATAATTATTAA-AGAAAATGTATTTTAGTAA
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTA-TAAGAG-AAGGGTATTTTTGTAA
* * * * *** * * * * *
15929066 TTATGGTATAATGACATAATAGTCTATTTAGGTGCATGTCCATTTTTTACCATATAGTGGAAAAG
64 TTATGATATGA-GGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAATG
15929131 A
127 A
* ** ** * * * ** *
15929132 CATTTTGGTAATTTCATACAAGGTTATTTAGTAAATAATTAT--G-GTATGAGGTCATAATGGT-
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAG-AAG-GGT-ATTTTTGTA
* *
15929193 -TCAT--T-T--GGC-TACAT-GTCAATTT----C-T-T--A--TC--AT-ATAT--TGGAAAAG
63 ATTATGATATGAGGCATA-ATAGTCAATTTGCCACATGTCAATTTCTTATCATATAATGGAAATG
*
15929235 G
127 A
* ** ** * * ** *
15929236 CATTTTGGTAATTTTTTAGGGGATTATTTAGTAAATAATTATAACTGAATGGATATTTTTGTAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAA-GGGTATTTTTGTAAT
* * * * * ** * *
15929301 TATGGTACGAGGGCAAAATAGTCAATTTGGCTATACATAAATTTATTTATCATATAATGGAAATG
65 TATGATATGA-GGCATAATAGTCAATTT-GCCACATGTCAATTT-CTTATCATATAATGGAAATG
*
15929366 G
127 A
* * * * * * * ** *
15929367 TGTTTTCGTAATTTCAAAGGAGCTTATTTAGTAAATAATTATAAGCGAAAGGTATTTTCATGATT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAAGGGTATTTTTGTAATT
** * * * *
15929432 AT-ATTATGAGGGTGTAATA-TTAATAATGGCCACATGTAAAGTTT-TTAAT-GTATAATGGAAA
66 ATGA-TATGA-GGCATAATAGTCAAT--TTGCCACATGTCAA-TTTCTT-ATCATATAATGGAAA
* *
15929493 GGG
125 TGA
* ** * * *
15929496 CATTTTGGTAAATTT-TTAAGG-GATTATTTAGTAAATAATTATAAAAGAAAGGGTATTTTTGTA
1 TATTTTCAT-AATTTCAT-AGGAGATTATTTACTAAATAATTATAAGAG-AAGGGTATTTTTGTA
* * *
15929559 ATTAT-AGTATGAGGACATAATAGCTC-ATTTGGCCACATGTTAATTT-TTATTATATAATGGGA
63 ATTATGA-TATGAGG-CATAATAG-TCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAA
* *
15929621 AGGG
124 ATGA
* * * * * * * *
15929625 CATTTT-AGTAATTTTATAAGAAAGTT-TTTAGTAAATAATTATTAA-AAAAGGGTGTTTTCGTA
1 TATTTTCA-TAATTTCATAGGAGA-TTATTTACTAAATAATTA-TAAGAGAAGGGTATTTTTGTA
* * * * * * * * * *
15929687 ATTATGGTATAAGGGCATAATAATCTATTTGATCACATGTCAACTTCTTATCGTACAATGAAAAA
63 ATTATGATATGA-GGCATAATAGTCAATTTG-CCACATGTCAATTTCTTATCATATAATGGAAAT
*
15929752 GG
126 GA
** * * * * *
15929754 TATTTTGGTAATTTAATAAGG-GATTATTTAGT-AATAATTATAATAGAGGGGTATTTTCGTAAT
1 TATTTTCATAATTTCAT-AGGAGATTATTTACTAAATAATTATAAGAGAAGGGTATTTTTGTAAT
* ** * * * * * ** ** * *
15929817 TATGGTATGAGAAAATAATAGACCATTTGGCCACATGTCAATTTCCTATGATGTTCTTTAAAAGG
65 TATGATATGAG-GCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAATGA
** * * * * *
15929882 TATTTTGGTAATGCCATACCATAGGAGATTATTTAGTAAATAATTAGAGGAGAAGGGGTATTTTA
1 TATTTTCATAAT----T-TCATAGGAGATTATTTACTAAATAATTATAAGAGAA-GGGTATTTTT
* * * * * * * * * *
15929947 GTTATTGTGATATAAGGGCGTAATGGTTAATTTTGCTATATGTAAAATTT-TTA-CATATAATGA
60 GTAATTATGATATGA-GGCATAATAGTCAA-TTTGCCACATGT-CAATTTCTTATCATATAATGG
*
15930010 AAATGG
122 AAATGA
* * ** * * **
15930016 CATTTTGATAATTTTTTAGG-GTATTATTTAGTAAATAATTATAGGAGAAGGGGTATTTTCATAA
1 TATTTTCATAATTTCATAGGAG-ATTATTTACTAAATAATTATAAGAGAA-GGGTATTTTTGTAA
* * * * * * * *
15930080 TGATGGTATAAGGGCATAATATTCCATTTGGTCATATGTTAATTTCTTATCATATAATGGGAAA-
64 TTATGATATGA-GGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAAT-GGAAAT
*
15930144 GG
126 GA
** ** *
15930146 TATTTT-AGTAATTTTTTATGG-GATTATTTACTAAATAATTATAAGAGAAATG-ATGTTTTCAT
1 TATTTTCA-TAATTTCATA-GGAGATTATTTACTAAATAATTATAAGAGAAGGGTAT-TTTT-GT
* * ** * * * * *
15930208 AATTATGGTAAGAGGGTTTAATAGT-ACATTTGGCCATAAGTCATTTTTTTGTCATATAA-GAGA
62 AATTATGATATGA-GGCATAATAGTCA-ATTT-GCCACATGTCAATTTCTTATCATATAATG-GA
* *
15930271 AAGGG
123 AATGA
** ** * * * * * * *
15930276 CCTTTTGGTAATTTCATAAGCGATTATTTAGTAAATAACTATAAGTGAAGAGGTAATTTAGTAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAAG-GGTATTTTTGTAAT
* * ** * * * *
15930341 TATGGTATGAGGGCATAATA-TTAATTTGGCCACACATTAATTTCTGAACATATAATGGAAATGG
65 TATGATATGA-GGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAATGA
* * * ** * * *
15930405 TATTTTGGA-AATGTAATAAGG-GATTATTTTGT-AATAGTTGTAAGAGAAGGGGTATTTTTATA
1 TATTTT-CATAATTTCAT-AGGAGATTATTTACTAAATAATTATAAGAGAA-GGGTATTTTTGTA
* * * *
15930467 ATTATGGA-ATGAGG-------G--AA-TGGCCACATGTCAATTTCTTATCATGTAATGAAAAAG
63 ATTAT-GATATGAGGCATAATAGTCAATTTGCCACATGTCAATTTCTTATCATATAATGGAAATG
*
15930521 G
127 A
* ** * * * * *
15930522 TTTTTTGGT-CTATTCACAAGG-GA-TATTTAGTAAATAATTGTAAGAAAAGGAGTATTTTTGTA
1 TATTTTCATAAT-TTCA-TAGGAGATTATTTACTAAATAATTATAAGAGAAGG-GTATTTTTGTA
* * * * * * * *
15930584 ATTAT-AGTA-AAGGGCATAGTAGTCTATTTGCCCACATTTTAA---CTTATTATAAAATGAAAA
63 ATTATGA-TATGA-GGCATAATAGTCAATTTG-CCACATGTCAATTTCTTATCATATAATGGAAA
*
15930644 TGC
125 TGA
** * * * * *
15930647 TATTTTGGTAATTTAATAAGTGATTATTTAGT-AATAATTATAATAGAAGGGATATTTTTGTAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAAGGG-TATTTTTGTAAT
* * * * * * * * *
15930711 TATGGTTTGAAGGAATAATAGACCATTTGGCCACATGTCAATTTCTTATC-TCGTAACGTAAAGG
65 TATGATATG-AGGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCAT-ATAATGGAAATG
*
15930775 G
127 A
* * * * **
15930776 TATTTTAATAATTTCATAGAAGATTATTTAGTAAATAATTATAAGAGAAAGGATATTTTCATAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAG-AAGGGTATTTTTGTAAT
* ** * * * * * * *
15930841 TATGATATGAAAGTGTAATAGTCAATTTGGTCATATGTAAATTTCTTAACATATAATGAAAAAGG
65 TATGATATG-AGGCATAATAGTCAATTT-GCCACATGTCAATTTCTTATCATATAATGGAAATGA
* ** * * * * * * * * *
15930906 CATTTTGTTAATTTCCTAGGGGATTAATTAGTAAAAAAATGTAAGAGAGGGGATATTTTCGTAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAAGGG-TATTTTTGTAAT
* * **
15930971 TATGGTATGAGAGCATAATAG-GACATTTGGCTGCATGTCAATATT-TTATCATATAATGGAAAA
65 TATGATATGAG-GCATAATAGTCA-ATTT-GCCACATGTCAAT-TTCTTATCATATAATGG-AAA
15931034 TG-
125 TGA
* * * **
15931036 CATTTT-ACTAATTTCAT-GTAGGATTATTTACTAAATAATTATAAGAGAAAGGTA-TTTCATAA
1 TATTTTCA-TAATTTCATAGGA-GATTATTTACTAAATAATTATAAGAGAAGGGTATTTTTGTAA
* * ** * ** * ** *
15931098 TTATGGTATGAAGGCTTAATAGTTC-ATTCAACCACAAGTCAATCGCTTGTCATATAATCAAAAG
64 TTATGATATG-AGGCATAATAG-TCAATT-TGCCACATGTCAATTTCTTATCATATAATGGAAAT
*
15931162 GG
126 GA
* * ** * * * *
15931164 CAGTTTGGTAATTTCTTAGGTA-ATTATTTAGTAAATAGTTATAAGAGAAGAGGTATTTATGTAA
1 TATTTTCATAATTTCATAGG-AGATTATTTACTAAATAATTATAAGAGAAG-GGTATTTTTGTAA
** * * * * * * *
15931228 TTATGGCATGAGGGCATAACAGTTAATTTGACCACATTTTAACTTCTTAACATATAATGG-AAGG
64 TTATGATATGA-GGCATAATAGTCAATTTG-CCACATGTCAATTTCTTATCATATAATGGAAATG
15931292 CA
127 -A
** * * * *
15931294 TATTTTGGTAATTT-AGT-GAAGGACTATTTA-GAAATAATTATAAGA-AA-CGTCATATTTTCG
1 TATTTTCATAATTTCA-TAGGA-GATTATTTACTAAATAATTATAAGAGAAGGGT-AT-TTTT-G
* * * * * * * **
15931354 TAATTATGGA-ATGAAGGAATAATAGTCCATTCGGTCGCATGTCAAATTCTAATCATGCAATGG-
61 TAATTAT-GATATG-AGGCATAATAGTCAATT-TGCCACATGTCAATTTCTTATCATATAATGGA
*
15931417 -ATGGG
123 AAT-GA
* ** * * * * * *
15931422 TTTTTTGGTCAA-TTC-TAGGGGATTATTTAGTAAATAATTACAAGAAAATGGATATTTTTATAA
1 TATTTTCAT-AATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAA-GGGTATTTTTGTAA
* * * * *
15931485 TTATGGTATGA---A-GATAGTCCATTTGACTACATG-CTAACTTCTTA-CTATATAATGGAAAT
64 TTATGATATGAGGCATAATAGTCAATTTG-CCACATGTC-AATTTCTTATC-ATATAATGGAAAT
*
15931544 GC
126 GA
** * * *
15931546 TATTTTGGTAATTTAATAAGAGATTATTT-C-ATAATAATTATAATAGAAAGGGTATTTTCT-TA
1 TATTTTCATAATTTCATAGGAGATTATTTACTA-AATAATTATAAGAG-AAGGGTATTTT-TGTA
** * * * * *
15931608 ATTATTG-TATGAAGAAATAGTAGATC-ATTTGACCACATATTAATTTCTTATCATGTAATGTAA
63 ATTA-TGATATG-AGGCATAATAG-TCAATTTG-CCACATGTCAATTTCTTATCATATAATGGAA
15931671 AGTG-
124 A-TGA
** * * *
15931675 TATTTTGGTAATTTCATATGAGATTTTTTAGTAAATAATTATAAGAGAAAGGGTATTTTTGTAAT
1 TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAG-AAGGGTATTTTTGTAAT
* *
15931740 TATGATATGAGGTCATAATAGTCAATTT----C-T-T--A------AT-ATATGATGGAAATAA
65 TATGATATGAGG-CATAATAGTCAATTTGCCACATGTCAATTTCTTATCATATAATGGAAATGA
* * * **
15931789 TATTTT-AGTAATTTCTTAAGAGATTATTTAATAAATAATTATATA-AGAAAGGGTATTTTCATA
1 TATTTTCA-TAATTTCATAGGAGATTATTTACTAAATAATTATA-AGAG-AAGGGTATTTTTGTA
* * * * * * * *
15931852 ATTATAATATAAGGGCTTAATAGT-ACATTTGATCATAGGTCAATTTCTTGTCATATAATGAAAA
63 ATTATGATATGA-GGCATAATAGTCA-ATTTG-CCACATGTCAATTTCTTATCATATAATGGAAA
*
15931916 TGG
125 TGA
* * *
15931919 TATTTT-AGTAATTTCATAGGTGATTATTT-GTAAATAATTATAAGAGAAGAGATATTTTTGTAA
1 TATTTTCA-TAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAAG-GGTATTTTTGTAA
*
15931982 TTATTG-TATAAGGGCATAATAGTCAATTTG
64 TTA-TGATATGA-GGCATAATAGTCAATTTG
15932012 ACAACATGAT
Statistics
Matches: 3069, Mismatches: 682, Indels: 566
0.71 0.16 0.13
Matches are distributed among these distances:
104 44 0.01
105 5 0.00
106 7 0.00
107 6 0.00
109 2 0.00
111 1 0.00
113 8 0.00
114 94 0.03
115 7 0.00
116 12 0.00
117 72 0.02
118 1 0.00
119 2 0.00
120 14 0.00
121 44 0.01
122 53 0.02
123 36 0.01
124 49 0.02
125 133 0.04
126 77 0.03
127 45 0.01
128 382 0.12
129 729 0.24
130 1038 0.34
131 111 0.04
132 9 0.00
133 13 0.00
134 31 0.01
135 35 0.01
136 9 0.00
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (127 bp):
TATTTTCATAATTTCATAGGAGATTATTTACTAAATAATTATAAGAGAAGGGTATTTTTGTAATT
ATGATATGAGGCATAATAGTCAATTTGCCACATGTCAATTTCTTATCATATAATGGAAATGA
Found at i:15928679 original size:250 final size:247
Alignment explanation
Indices: 15928210--15928819 Score: 559
Period size: 250 Copynumber: 2.4 Consensus size: 247
15928200 GGTCACATGT
* * * * * *
15928210 CAATTTCTTATCATATAATGAAAAAGGTC-TTTTAGTCATTTCTTAAGGGATTTTTTACTTAATA
1 CAATTTCTTATCATATAATGCAAAAGG-CATTTTAG---TTT-ATAGGGGATTATTTAGTAAATA
* ** * * * **
15928274 ATTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAAGGCATAATAGTCCATTTGACCACATG
61 ATTATAAGAGAAGGGGTATTTTCATAATTATAATATG-AGG-------GTCAATTTGGCAACACA
* * * **
15928339 TTAATTTCTTATCATACAATGGAAACGGTATTTTAGAAATTTTATAGGCGATTACTTTGTAAATA
118 TAAATTTCTTATCATACAATGGAAACGGCATTTTAGAAATTTTATAGGCGATTACATTAAAAATA
* * * * *
15928404 ATTATAAGAGAAGGGTTATTTTCATAATTATTATTTAGGGGCATAATATTCAATAAG-CCATA-T
183 ATTATAAGAGAAGGGTTAATTTCATAATTATGATAT-GAGGCATAATAGTCAATAAGACCA-AGT
*
15928467 GT
246 GC
* * * *
15928469 CAATTTCTTTTCATATAATG-AAAATGGTATTTTGTAATTTTATAGTGGATTATTTAGTAAATAA
1 CAATTTCTTATCATATAATGCAAAA-GGCA-TTT-T-AGTTTATAGGGGATTATTTAGTAAATAA
** * *
15928533 TTATAAGAGAAGGGGTATTTTTGTAATTATGATATTAGGGTCAATTTGGCAACACATAAATTTCT
62 TTATAAGAGAAGGGGTATTTTCATAATTATAATATGAGGGTCAATTTGGCAACACATAAATTTCT
* * * ** *
15928598 TATCATATAATGGAAAGGGCATTTTTGTGATTTCT-TAGGGGATTA-ATTAAAAATTAATTATAA
127 TATCATACAATGGAAACGGCATTTTAGAAATTT-TATAGGCGATTACATTAAAAA-TAATTATAA
* * * **
15928661 GCGAAAGGG-TAATTTCATAATTATGGTATGAGGCATAATAGTCCATTTGACCAAGTGC
190 GAG-AAGGGTTAATTTCATAATTATGATATGAGGCATAATAGTCAATAAGACCAAGTGC
* *
15928719 CAATTTCTTATCATGTAATGCAAAAGGCATTTTAGTTTCTAGGGGATTATTTAGTAAATAATTAT
1 CAATTTCTTATCATATAATGCAAAAGGCATTTTAGTTTATAGGGGATTATTTAGTAAATAATTAT
15928784 AAGAGAAGGGGTATTTTCATAATTATAATATGAGGG
66 AAGAGAAGGGGTATTTTCATAATTATAATATGAGGG
15928820 CATAATAGTG
Statistics
Matches: 289, Mismatches: 51, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
247 61 0.21
248 1 0.00
249 24 0.08
250 109 0.38
251 10 0.03
257 3 0.01
258 52 0.18
259 24 0.08
260 3 0.01
261 1 0.00
262 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.39
Consensus pattern (247 bp):
CAATTTCTTATCATATAATGCAAAAGGCATTTTAGTTTATAGGGGATTATTTAGTAAATAATTAT
AAGAGAAGGGGTATTTTCATAATTATAATATGAGGGTCAATTTGGCAACACATAAATTTCTTATC
ATACAATGGAAACGGCATTTTAGAAATTTTATAGGCGATTACATTAAAAATAATTATAAGAGAAG
GGTTAATTTCATAATTATGATATGAGGCATAATAGTCAATAAGACCAAGTGC
Found at i:15929188 original size:104 final size:104
Alignment explanation
Indices: 15929063--15929277 Score: 256
Period size: 104 Copynumber: 2.1 Consensus size: 104
15929053 TGTATTTTAG
* * * *
15929063 TAATTATGGTATAATGACATAATAG-TCTATTTAGG-TGCATGTCCATTTTTTACCATATAGTGG
1 TAATTATGGTATAAGGACATAATAGTTC-ATTT-GGCTACATGTCAATTTCTTACCATATAGTGG
15929126 AAAAGACATTTTGGTAATTTCATACAAGG-TTATTTAGTAAA
64 AAAAGACATTTTGGTAATTTCATA-AAGGATTATTTAGTAAA
* * * * *
15929167 TAATTATGGTATGAGGTCATAATGGTTCATTTGGCTACATGTCAATTTCTTATCATATATTGGAA
1 TAATTATGGTATAAGGACATAATAGTTCATTTGGCTACATGTCAATTTCTTACCATATAGTGGAA
* ** **
15929232 AAGGCATTTTGGTAATTTTTTAGGGGATTATTTAGTAAA
66 AAGACATTTTGGTAATTTCATAAAGGATTATTTAGTAAA
15929271 TAATTAT
1 TAATTAT
15929278 AACTGAATGG
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
103 4 0.04
104 88 0.94
105 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (104 bp):
TAATTATGGTATAAGGACATAATAGTTCATTTGGCTACATGTCAATTTCTTACCATATAGTGGAA
AAGACATTTTGGTAATTTCATAAAGGATTATTTAGTAAA
Found at i:15929488 original size:494 final size:489
Alignment explanation
Indices: 15928677--15929581 Score: 1076
Period size: 494 Copynumber: 1.8 Consensus size: 489
15928667 GGGTAATTTC
*
15928677 ATAATTATGGTATGAGGCATAATAGTCCATTTGACCAAGTGCCAATTTCTTATCATGTAATGCAA
1 ATAATTATGGTATGAGGCATAATAGTCCATTTGACCAAGTGCCAATTTCTTATCATATAATGCAA
* *
15928742 AAGGCATTTTAGTTTCTAGGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAAT
66 AAGGCATTTTAGTTTCTAGGGGATTATTTAGTAAATAATTATAACAGAAGGGATATTTTCATAAT
* * * * *
15928807 TATAATATGAGGGCATAATAGTGAATTTGGCTACACGTCAATTTTTTATCAAATAATGAAAAGAG
131 TATAATACGAGGGCAAAATAGTCAATTTGGCTACACATAAATTTTTTATCAAATAATGAAAAGAG
* * *
15928872 TAATTTAGTAATTTTATAAAGGGTTATTTTGTAAATAATTATAAGAGAAAGTGTATTTTGTAATT
196 TAATTTAGTAATTTTACAAAGGGTTATTTAGTAAATAATTATAAGAGAAAGTGTATTTTATAATT
* * * *
15928937 ATGGTATAGAAAGCATAATAGTTTATTTGGGCACATCCCAAATTCTAATCATATAATGGAAAGGG
261 ATAGTATAGAAAGCATAATAGTTAATATGGCCACATCCCAAATTCTAATCATATAATGGAAAGGG
* * * *
15929002 TATTTTTGT-AATTTCAT-AGGAGATTATTTAGTAAATAATTATTAAAGAAAATGTATTTTAGTA
326 CATTTTGGTAAATTT-ATAAGG-GATTATTTAGTAAATAATTATAAAAGAAAAGGTATTTTAGTA
* *
15929065 ATTATGGTATAATGACATAATAGTCTATTTAGGTGCATGTCCATTTTTTACCATATAGTGGAAAA
389 ATTATAGTATAAGGACATAATAGTCTATTTAGGTGCATGTCCATTTTTTACCATATAGTGGAAAA
15929130 GACATTTTGGTAATTTCATACAAGGTTATTTAGTAA
454 GACATTTTGGTAATTTCATACAAGGTTATTTAGTAA
* * * * * * *
15929166 ATAATTATGGTATGAGGTCATAATGGTTCATTTGGCTACA-TGTCAATTTCTTATCATATATTGG
1 ATAATTATGGTATGAGG-CATAATAGTCCATTTGACCA-AGTGCCAATTTCTTATCATATAATGC
* * * *
15929230 AAAAGGCATTTTGGTAATTTTTTAGGGGATTATTTAGTAAATAATTATAACTGAATGGATATTTT
64 AAAAGGCA-TTT--T-AGTTTCTAGGGGATTATTTAGTAAATAATTATAACAGAAGGGATATTTT
** ** * *
15929295 TGTAATTATGGTACGAGGGCAAAATAGTCAATTTGGCTATACATAAATTTATTTATCATATAATG
125 CATAATTATAATACGAGGGCAAAATAGTCAATTTGGCTACACATAAATTT-TTTATCAAATAAT-
* ** * *
15929360 GAAATG-GTGTTTTCGTAA-TTT-CAAAGGAGCTTATTTAGTAAATAATTATAAGCGAAAG-GTA
188 GAAAAGAGTAATTTAGTAATTTTACAAAGG-G-TTATTTAGTAAATAATTATAAGAGAAAGTGTA
* * ** ** ** * *
15929421 TTTTCATGATTATATTAT-GAGGGTGTAATA-TTAATAATGGCCACAT-GTAAAGTTTTTAAT-G
251 TTTT-ATAATTATAGTATAGAAAGCATAATAGTTAAT-ATGGCCACATCCCAAA--TTCTAATCA
* *
15929482 TATAATGGAAAGGGCATTTTGGTAAATTTTTAAGGGATTATTTAGTAAATAATTATAAAAGAAAG
312 TATAATGGAAAGGGCATTTTGGTAAATTTATAAGGGATTATTTAGTAAATAATTATAAAAGAAAA
* *
15929547 GGTATTTTTGTAATTATAGTATGAGGACATAATAG
377 GGTATTTTAGTAATTATAGTATAAGGACATAATAG
15929582 CTCATTTGGC
Statistics
Matches: 343, Mismatches: 57, Indels: 27
0.80 0.13 0.06
Matches are distributed among these distances:
489 17 0.05
490 44 0.13
491 4 0.01
493 13 0.04
494 190 0.55
495 70 0.20
496 5 0.01
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (489 bp):
ATAATTATGGTATGAGGCATAATAGTCCATTTGACCAAGTGCCAATTTCTTATCATATAATGCAA
AAGGCATTTTAGTTTCTAGGGGATTATTTAGTAAATAATTATAACAGAAGGGATATTTTCATAAT
TATAATACGAGGGCAAAATAGTCAATTTGGCTACACATAAATTTTTTATCAAATAATGAAAAGAG
TAATTTAGTAATTTTACAAAGGGTTATTTAGTAAATAATTATAAGAGAAAGTGTATTTTATAATT
ATAGTATAGAAAGCATAATAGTTAATATGGCCACATCCCAAATTCTAATCATATAATGGAAAGGG
CATTTTGGTAAATTTATAAGGGATTATTTAGTAAATAATTATAAAAGAAAAGGTATTTTAGTAAT
TATAGTATAAGGACATAATAGTCTATTTAGGTGCATGTCCATTTTTTACCATATAGTGGAAAAGA
CATTTTGGTAATTTCATACAAGGTTATTTAGTAA
Found at i:15929533 original size:129 final size:130
Alignment explanation
Indices: 15929166--15929860 Score: 380
Period size: 129 Copynumber: 5.4 Consensus size: 130
15929156 TATTTAGTAA
* * * * * * * * *
15929166 ATAATTATGGTATGAGGTCATAATGGTTCATTTGGCTACATGTCAATTTCTT-ATCATATATTGG
1 ATAATTATAGTATGAGGACATAATAGCTAATATGGCCACATGTAAATTT-TTAAT-ATATAATGG
* * * * ** ** * *
15929230 AAAAGGCATTTTGGTAATTTTTTAGGGGA-TTATTTAGTAAATAATTATAACTGAATGGATATTT
64 AAAGGGCATTTTAGTAATTTTATAAGAAAGTTATTTAGTAAATAATTATAAAAGAAAGGGTATTT
*
15929294 TT
129 TC
* * * * * * * * ** *
15929296 GTAATTATGGTACGAGGGCAAAATAG-TCAATTTGGCTATACATAAATTTATTTATCATATAATG
1 ATAATTATAGTATGAGGACATAATAGCT-AATATGGCCACATGTAAATTT-TTAAT-ATATAATG
* ** * * * **
15929360 GAAATGGTGTTTTCGTAATTTCA-AAG-GAGCTTATTTAGTAAATAATTATAAGCGAAA-GGTAT
63 GAAAGGGCATTTTAGTAATTTTATAAGAAAG-TTATTTAGTAAATAATTATAAAAGAAAGGGTAT
15929422 TTTC
127 TTTC
* * *** * *
15929426 ATGATTATATTATGAGGGTGTAATA-TTAATAATGGCCACATGTAAAGTTTTTAATGTATAATGG
1 ATAATTATAGTATGAGGACATAATAGCTAAT-ATGGCCACATGTAAA-TTTTTAATATATAATGG
* **
15929490 AAAGGGCATTTTGGTAAATTTT-TAAGGGA-TTATTTAGTAAATAATTATAAAAGAAAGGGTATT
64 AAAGGGCATTTTAGT-AATTTTATAAGAAAGTTATTTAGTAAATAATTATAAAAGAAAGGGTATT
*
15929553 TTT
128 TTC
* * * * * *
15929556 GTAATTATAGTATGAGGACATAATAGCTCATTTGGCCACATGTTAATTTTTATTATATAATGGGA
1 ATAATTATAGTATGAGGACATAATAGCTAATATGGCCACATGTAAATTTTTAATATATAATGGAA
* *
15929621 AGGGCATTTTAGTAATTTTATAAGAAAGTT-TTTAGTAAATAATTATTAAA-AAAGGGTGTTTTC
66 AGGGCATTTTAGTAATTTTATAAGAAAGTTATTTAGTAAATAATTATAAAAGAAAGGGTATTTTC
* * * * * * ** * * * *
15929684 GTAATTATGGTATAAGGGCATAATAATCT-ATTTGATCACATGTCAACTTCTT-ATCGTACAATG
1 ATAATTATAGTATGAGGACATAAT-AGCTAATATGGCCACATGT-AAATTTTTAAT-ATATAATG
* * * * * ** * *
15929747 AAAAAGGTATTTTGGTAATTTAATAAGGGA-TTATTTAGT-AATAATTATAATAG-AGGGGTATT
63 GAAAGGGCATTTTAGTAATTTTATAAGAAAGTTATTTAGTAAATAATTATAAAAGAAAGGGTATT
15929809 TTC
128 TTC
* * * * * * *
15929812 GTAATTATGGTATGAGAAAATAATAGAC-CATTTGGCCACATGTCAATTT
1 ATAATTATAGTATGAGGACATAATAG-CTAATATGGCCACATGTAAATTT
15929861 CCTATGATGT
Statistics
Matches: 444, Mismatches: 100, Indels: 45
0.75 0.17 0.08
Matches are distributed among these distances:
127 4 0.01
128 107 0.24
129 144 0.32
130 130 0.29
131 59 0.13
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.39
Consensus pattern (130 bp):
ATAATTATAGTATGAGGACATAATAGCTAATATGGCCACATGTAAATTTTTAATATATAATGGAA
AGGGCATTTTAGTAATTTTATAAGAAAGTTATTTAGTAAATAATTATAAAAGAAAGGGTATTTTC
Found at i:15930161 original size:129 final size:128
Alignment explanation
Indices: 15929166--15932011 Score: 1383
Period size: 130 Copynumber: 22.3 Consensus size: 128
15929156 TATTTAGTAA
* * * * * *
15929166 ATAATTATGGTATGAGGTCATAATGGTTCATTTGGCTACATGTCAATTTCTTATCATATATTGGA
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
* ** * * *
15929231 AAAGGCATTTTGGTAATTTTTTAGGGGATTATTTAGTAAATAATTATAACTGAATGGATATTTTT
66 AAAGGTATTTTGGTAA-TTTTTA-GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTC
* ** * * * * ** * *
15929296 GTAATTATGGTACGAGGGCAAAATAGTCAATTTGGCTATACATAAATTTATTTATCATATAATGG
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTT-CTTATCATATAATGG
* * * ** * * *
15929361 AAATGGTGTTTTCGTAATTTCAAAGGAGCTTATTTAGTAAATAATTATAAGCGAA-AGGTATTTT
65 AAAAGGTATTTTGGTAATTT-TTAGG-GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTT
15929425 C
128 C
* ** * ** ** * * *
15929426 ATGATTATATTATGAGGGTGTAATA-TTAATAATGGCCACATGTAAAGTTT-TTAAT-GTATAAT
1 ATAATTATGGTATAAGGGCATAATAGTCCAT-TTGGCCACATGTCAA-TTTCTT-ATCATATAAT
* * * *
15929488 GGAAAGGGCATTTTGGTAAATTTTTAAGGGATTATTTAGTAAATAATTATAAAAGAAAGGGTATT
63 GGAAAAGGTATTTTGGT-AATTTTT-AGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATT
*
15929553 TTT
126 TTC
* * * * * *
15929556 GTAATTATAGTATGAGGACATAATAG-CTCATTTGGCCACATGTTAATTT-TTATTATATAATGG
1 ATAATTATGGTATAAGGGCATAATAGTC-CATTTGGCCACATGTCAATTTCTTATCATATAATGG
* * * * ** * *
15929619 GAAGGGCATTTTAGTAATTTTATAAGAAAGTT-TTTAGTAAATAATTATTAA-A-AAAGGGTGTT
65 AAAAGGTATTTTGGTAATTTT-T-AGGGA-TTATTTAGTAAATAATTA-TAAGAGAAGGGGTATT
15929681 TTC
126 TTC
* * * ** * * * *
15929684 GTAATTATGGTATAAGGGCATAATAATCTATTTGATCACATGTCAACTTCTTATCGTACAATGAA
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
* *
15929749 AAAGGTATTTTGGTAATTTAATAAGGGATTATTTAGT-AATAATTATAATAG-AGGGGTATTTTC
66 AAAGGTATTTTGGTAATTT--TTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTC
* * *** * * * * ** **
15929812 GTAATTATGGTATGAGAAAATAATAGACCATTTGGCCACATGTCAATTTCCTATGATGTTCTTTA
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
** * *
15929877 AAAGGTATTTTGGTAATGCCATACCATAGGAGATTATTTAGTAAATAATTAGAGGAGAAGGGGTA
66 AAAGGTATTTTGGTAAT----T--TTTAGG-GATTATTTAGTAAATAATTATAAGAGAAGGGGTA
15929942 TTTT-
124 TTTTC
* * * * * ** * * * *
15929946 AGTTATTGTGATATAAGGGCGTAATGGTTAATTTTGCTATATGTAAAATTT-TTA-CATATAAT-
1 A-TAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGT-CAATTTCTTATCATATAATG
* * *
15930008 GAAAATGGCATTTTGATAATTTTTTAGGGTATTATTTAGTAAATAATTATAGGAGAAGGGGTATT
64 GAAAA-GGTATTTTGGTAA-TTTTTAGGG-ATTATTTAGTAAATAATTATAAGAGAAGGGGTATT
15930073 TTC
126 TTC
* * * * * *
15930076 ATAATGATGGTATAAGGGCATAATATTCCATTTGGTCATATGTTAATTTCTTATCATATAATGGG
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
* * ** * *
15930141 AAAGGTATTTTAGTAATTTTTTATGGGATTATTTACTAAATAATTATAAGAGAAATGATGTTTTC
66 AAAGGTATTTTGGTAA-TTTTTA-GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTC
** * * * * * *
15930206 ATAATTATGGTA-AGAGGGTTTAATAGTACATTTGGCCATAAGTCATTTTTTTGTCATATAA-GA
1 ATAATTATGGTATA-AGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATG-
* ** * * * * * *
15930269 GAAAGGGCCTTTTGGTAATTTCATAAGCGATTATTTAGTAAATAACTATAAGTGAAGAGGTAATT
64 GAAAAGGTATTTTGGTAATTT--TTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTT
15930334 T-
127 TC
* ** ** * * *
15930335 AGTAATTATGGTATGAGGGCATAATA-TTAATTTGGCCACACATTAATTTCTGAACATATAATGG
1 A-TAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG
* * * * * * *
15930399 AAATGGTATTTTGGAAATGTAATAAGGGATTATTTTGT-AATAGTTGTAAGAGAAGGGGTATTTT
65 AAAAGGTATTTTGGTAAT-T-TTTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTT
*
15930463 T
128 C
* * * *
15930464 ATAATTATGGAATGAGGG------A----A--TGGCCACATGTCAATTTCTTATCATGTAATGAA
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
* * *** * * * *
15930517 AAAGGTTTTTTGGTCTATTCACAAGGGA-TATTTAGTAAATAATTGTAAGAAAAGGAGTATTTTT
66 AAAGGTATTTTGGT-AATT-TTTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTC
* * * * * * * * *
15930581 GTAATTATAGTA-AAGGGCATAGTAGTCTATTTGCCCACATTTTAA---CTTATTATAAAAT-GA
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
* * * * *
15930641 AAATGCTATTTTGGTAATTTAATAAGTGATTATTTAGT-AATAATTATAATAGAAGGGATATTTT
66 AAA-GGTATTTTGGTAATTT--TTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTT
*
15930705 T
128 C
* * * * * *
15930706 GTAATTATGGTTTGAA-GGAATAATAGACCATTTGGCCACATGTCAATTTCTTATC-TCGTAACG
1 ATAATTATGGTAT-AAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCAT-ATAATG
* * ** * * * *
15930769 TAAAGGGTATTTTAATAATTTCATAGAAGATTATTTAGTAAATAATTATAAGAGAAAGGATATTT
64 GAAAAGGTATTTTGGTAATTT-TTAG-GGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTT
15930834 TC
127 TC
* * * * * * *
15930836 ATAATTATGATATGAAAGTG--TAATAGTCAATTTGGTCATATGTAAATTTCTTAACATATAATG
1 ATAATTATGGTAT--AAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATG
* * * * * * * *
15930899 AAAAAGGCATTTTGTTAATTTCCTAGGGGATTAATTAGTAAAAAAATGTAAGAG-AGGGGATATT
64 GAAAAGGTATTTTGGTAATTT-TTA-GGGATTATTTAGTAAATAATTATAAGAGAAGGGG-TATT
15930963 TTC
126 TTC
* * * ** **
15930966 GTAATTATGGTATGAGAGCATAATAGGACATTTGGCTGCATGTCAATATT-TTATCATATAATGG
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAAT-TTCTTATCATATAATGG
* * ** * *
15931030 AAAATGCATTTTACTAATTTCATGTA-GGATTATTTACTAAATAATTATAAGAGAA-AGGTA-TT
65 AAAAGGTATTTTGGTAATTT--T-TAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTT
15931092 TC
127 TC
* * *** * ** * *
15931094 ATAATTATGGTATGAA-GGCTTAATAGTTCATTCAACCACAAGTCAATCGCTTGTCATATAAT-C
1 ATAATTATGGTAT-AAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG
* * * * *
15931157 AAAAGGGCAGTTTGGTAATTTCTTAGGTAATTATTTAGTAAATAGTTATAAGAGAAGAGGTATTT
65 AAAA-GGTATTTTGGTAATTT-TTAGG-GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTT
15931222 AT-
127 -TC
* * * * ** * * * * *
15931224 GTAATTATGGCATGAGGGCATAACAGTTAATTTGACCACATTTTAACTTCTTAACATATAATGG-
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
* * * ***
15931288 -AAGGCATATTTTGGTAATTTAGTGAAGGACTATTTAG-AAATAATTATAAGA-AACGTCATATT
66 AAAGG--TATTTTGGTAATTT--TTAGGGATTATTTAGTAAATAATTATAAGAGAA-GGGGTATT
15931350 TTC
126 TTC
* * * * * * * * **
15931353 GTAATTATGGAATGAA-GGAATAATAGTCCATTCGGTCGCATGTCAAATTCTAATCATGCAATGG
1 ATAATTATGGTAT-AAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG
** * * * * * *
15931417 -ATGGGTTTTTTGGTCAA-TTCTAGGGGATTATTTAGTAAATAATTACAAGAAAATGGATATTTT
65 AAAAGGTATTTTGGT-AATTTTTA-GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTT
*
15931480 T
128 C
* * *
15931481 ATAATTATGGTAT----G-A-AGATAGTCCATTTGACTACATG-CTAACTTCTTA-CTATATAAT
1 ATAATTATGGTATAAGGGCATA-ATAGTCCATTTGGCCACATGTC-AATTTCTTATC-ATATAAT
* * * * * *
15931538 GGAAATGCTATTTTGGTAATTTAATAAGAGATTATTTCA-T-AATAATTATAATAGAAAGGGTAT
63 GGAAAAGGTATTTTGGTAATTT--TTAGGGATTATTT-AGTAAATAATTATAAGAGAAGGGGTAT
15931601 TTTC
125 TTTC
* * ** * * * * *
15931605 TTAATTATTGTATGAA-GAAATAGTAGAT-CATTTGACCACATATTAATTTCTTATCATGTAAT-
1 ATAATTATGGTAT-AAGGGCATAATAG-TCCATTTGGCCACATGTCAATTTCTTATCATATAATG
* * * * *
15931667 GTAAAGTGTATTTTGGTAATTTCATATGAGATTTTTTAGTAAATAATTATAAGAGAAAGGGTATT
64 GAAAAG-GTATTTTGGTAATTT-TTA-GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATT
*
15931732 TTT
126 TTC
* * * * * *
15931735 GTAATTATGATATGAGGTCATAATAGTCAATTT-----C-T-T--A------AT-ATATGATGGA
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
* * * * *
15931784 AATA-ATATTTTAGTAATTTCTTAAGAGATTATTTAATAAATAATTATATA-AGAAAGGGTATTT
66 AA-AGGTATTTTGGTAATTT-TT-AGGGATTATTTAGTAAATAATTATA-AGAGAAGGGGTATTT
15931847 TC
127 TC
** * * ** * * *
15931849 ATAATTATAATATAAGGGCTTAATAGTACATTTGATCATAGGTCAATTTCTTGTCATATAAT-GA
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
* * * *
15931913 AAATGGTATTTTAGTAATTTCATAGGTGATTATTT-GTAAATAATTATAAGAGAAGAGATATTTT
66 AAA-GGTATTTTGGTAATTT-TTAGG-GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTT
*
15931977 T
128 C
* * *
15931978 GTAATTATTGTATAAGGGCATAATAGTCAATTTG
1 ATAATTATGGTATAAGGGCATAATAGTCCATTTG
15932012 ACAACATGAT
Statistics
Matches: 2059, Mismatches: 500, Indels: 315
0.72 0.17 0.11
Matches are distributed among these distances:
114 82 0.04
115 7 0.00
116 12 0.01
117 78 0.04
118 2 0.00
119 1 0.00
121 2 0.00
122 5 0.00
123 34 0.02
124 53 0.03
125 67 0.03
126 37 0.02
127 21 0.01
128 339 0.16
129 493 0.24
130 653 0.32
131 79 0.04
132 7 0.00
133 15 0.01
134 26 0.01
135 41 0.02
136 5 0.00
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (128 bp):
ATAATTATGGTATAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA
AAAGGTATTTTGGTAATTTTTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTC
Found at i:15932002 original size:243 final size:243
Alignment explanation
Indices: 15931523--15932010 Score: 594
Period size: 243 Copynumber: 2.0 Consensus size: 243
15931513 ACATGCTAAC
* ** * *
15931523 TTCTTACTATATAATGGAAATGCTATTTTGGTAATTTAATAAGAGATTATTTCATAATAATTATA
1 TTCTTAATATATAATGGAAATAATATTTTAGTAATTTAATAAGAGATTATTTAATAATAATTATA
* ** * * *
15931588 ATAGAAAGGGTATTTTCTTAATTATTGTATGAAGAAATAGTAGATCATTTGACCACATATTAATT
66 ATAGAAAGGGTATTTTCATAATTATAATATGAAGAAATAATAGATCATTTGACCACAGATCAATT
* * * * *
15931653 TCTTATCATGTAATGTAAAGTGTATTTTGGTAATTTCATATGAGATTTTTTAGTAAATAATTATA
131 TCTTATCATATAATGAAAAGTGTATTTTAGTAATTTCATAGGAGATTATTTAGTAAATAATTATA
* * *
15931718 AGAGAAAGGGTATTTTTGTAATTATGATATGAGGTCATAATAGTCAAT
196 AGAGAAAGGATATTTTTGTAATTATGATATAAGGGCATAATAGTCAAT
* **
15931766 TTCTTAATATATGATGGAAATAATATTTTAGTAATTTCTTAAGAGATTATTTAATAAATAATTAT
1 TTCTTAATATATAATGGAAATAATATTTTAGTAATTTAATAAGAGATTATTTAAT-AATAATTAT
*** * * *
15931831 -ATAAGAAAGGGTATTTTCATAATTATAATAT-AAGGGCTTAATAG-TACATTTGATCATAGGTC
65 AAT-AGAAAGGGTATTTTCATAATTATAATATGAA-GAAATAATAGAT-CATTTGACCACAGATC
* *
15931893 AATTTCTTGTCATATAATGAAAA-TGGTATTTTAGTAATTTCATAGGTGATTATTT-GTAAATAA
127 AATTTCTTATCATATAATGAAAAGT-GTATTTTAGTAATTTCATAGGAGATTATTTAGTAAATAA
15931956 TTATAAGAG-AAGAGATATTTTTGTAATTATTG-TATAAGGGCATAATAGTCAAT
191 TTATAAGAGAAAG-GATATTTTTGTAATTA-TGATATAAGGGCATAATAGTCAAT
15932009 TT
1 TT
15932011 GACAACATGA
Statistics
Matches: 208, Mismatches: 30, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
242 3 0.01
243 106 0.51
244 99 0.48
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (243 bp):
TTCTTAATATATAATGGAAATAATATTTTAGTAATTTAATAAGAGATTATTTAATAATAATTATA
ATAGAAAGGGTATTTTCATAATTATAATATGAAGAAATAATAGATCATTTGACCACAGATCAATT
TCTTATCATATAATGAAAAGTGTATTTTAGTAATTTCATAGGAGATTATTTAGTAAATAATTATA
AGAGAAAGGATATTTTTGTAATTATGATATAAGGGCATAATAGTCAAT
Found at i:15937377 original size:130 final size:127
Alignment explanation
Indices: 15936964--15937390 Score: 332
Period size: 130 Copynumber: 3.3 Consensus size: 127
15936954 GTATGACAAA
* * * * * *
15936964 ATAATAGTCCA-TTAGGCCATATGTCAATTTCTTATCATGTAGTGTAAAAGGTAATTTG-ATAAT
1 ATAATAGTTCATTTA-GCCACATGTCAATTTCTTATCATATA-TGGAAAAGGCATTTTGTA-AAT
* * * * * *
15937027 TTTATAAGGATTATTTAATAAATAATTATAATAGAAAGGGTATTTTCATAATTATGATACGA-AG
63 TTTA-AGGGATTATTTAATAAATAATTAAAAAAGAAGGGGTATTTTCATAATTATGACATGAGA-
15937091 GC
126 GC
* * * * ** * *
15937093 ATTATAGTTAATTTATCCACTTGAAAATTTCTTAACA-AT-T-GAAAAGGCATTTTGGTAATTTT
1 ATAATAGTTCATTTAGCCACATGTCAATTTCTTATCATATATGGAAAAGGCATTTT-GTAA-ATT
* * ** ** * * *
15937155 TTAGGGGATTATTTATTAAATAA-TAATAGGAGAAGGGGTATTTTTGTAAATATGACTTGAGGGC
64 TTAAGGGATTATTTAATAAATAATTAA-AAAAGAAGGGGTATTTTCATAATTATGACATGAGAGC
* * * * * *
15937219 ATAATA-ATCAATTTAGCCATATGCCAATTTTTTATCATATAATGGAAATGCCATTTTAGTAAAT
1 ATAATAGTTC-ATTTAGCCACATGTCAATTTCTTATCATAT-ATGGAAAAGGCATTTT-GTAAAT
* *
15937283 TCTTAAGGGATTATTTAGTAAAAAATTAAAAAAGAAGGGGTATTTTCATAATTATGACATGAGAG
63 T-TTAAGGGATTATTTAATAAATAATTAAAAAAGAAGGGGTATTTTCATAATTATGACATGAGAG
15937348 C
127 C
*
15937349 ATAATAGTTCA-TTAGGCCACATGTCAATTTCTTATCACATAT
1 ATAATAGTTCATTTA-GCCACATGTCAATTTCTTATCATATAT
15937391 TAGAAAGGGT
Statistics
Matches: 226, Mismatches: 57, Indels: 30
0.72 0.18 0.10
Matches are distributed among these distances:
125 13 0.06
126 71 0.31
127 8 0.04
128 1 0.00
129 32 0.14
130 96 0.42
131 5 0.02
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (127 bp):
ATAATAGTTCATTTAGCCACATGTCAATTTCTTATCATATATGGAAAAGGCATTTTGTAAATTTT
AAGGGATTATTTAATAAATAATTAAAAAAGAAGGGGTATTTTCATAATTATGACATGAGAGC
Found at i:15938599 original size:20 final size:19
Alignment explanation
Indices: 15938513--15938639 Score: 74
Period size: 19 Copynumber: 6.6 Consensus size: 19
15938503 ATGGTTTCAA
* *
15938513 GGTTTCACTTAGGGTTTAG
1 GGTTTCACCTAGGGTTTCG
* * * * **
15938532 GATATCACATAAGGTTTAA
1 GGTTTCACCTAGGGTTTCG
* *
15938551 GGTTTTACCTAGGGTTTCA
1 GGTTTCACCTAGGGTTTCG
* *
15938570 GATTTTACCTAGGGCTTTCG
1 GGTTTCACCTAGGG-TTTCG
**
15938590 GGTTTCACCTAAAGTTTCG
1 GGTTTCACCTAGGGTTTCG
* ** *
15938609 AGTTTCACCTAAAGTTTTG
1 GGTTTCACCTAGGGTTTCG
*
15938628 AGTTTCACCTAG
1 GGTTTCACCTAG
15938640 AGTCTTAGAT
Statistics
Matches: 87, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
19 73 0.84
20 14 0.16
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (19 bp):
GGTTTCACCTAGGGTTTCG
Found at i:15938671 original size:19 final size:19
Alignment explanation
Indices: 15938591--15938672 Score: 103
Period size: 19 Copynumber: 4.3 Consensus size: 19
15938581 GGGCTTTCGG
*
15938591 GTTTCACCTAAAGTTTCGA
1 GTTTCACCTAAAGTTTTGA
15938610 GTTTCACCTAAAGTTTTGA
1 GTTTCACCTAAAGTTTTGA
* *
15938629 GTTTCACCTAGAGTCTT-A
1 GTTTCACCTAAAGTTTTGA
*
15938647 GATTTCACCTAAGGTTTTGA
1 G-TTTCACCTAAAGTTTTGA
*
15938667 TTTTCA
1 GTTTCA
15938673 TTTTAGGGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
18 2 0.04
19 51 0.94
20 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.41
Consensus pattern (19 bp):
GTTTCACCTAAAGTTTTGA
Found at i:15942616 original size:35 final size:37
Alignment explanation
Indices: 15942575--15942656 Score: 107
Period size: 38 Copynumber: 2.3 Consensus size: 37
15942565 TAGAAAAGAA
* **
15942575 ATAATTTCTA-T-AAAATCTTACTAACATATTGGAGG
1 ATAATTTCTAGTAAAAATCTTACCAACATATTCAAGG
15942610 ATAATTTCTAGTAGAAAATCTTACCAACATATTCAAGG
1 ATAATTTCTAGTA-AAAATCTTACCAACATATTCAAGG
15942648 AT-ATTTCTA
1 ATAATTTCTA
15942657 AACATAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
35 10 0.24
36 1 0.02
37 7 0.17
38 23 0.56
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (37 bp):
ATAATTTCTAGTAAAAATCTTACCAACATATTCAAGG
Found at i:15959102 original size:45 final size:45
Alignment explanation
Indices: 15959053--15959144 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
15959043 CCTTAGTAAG
** **
15959053 GGCCAACATATGCTGATGGTGGTCGAGGTAGGTGCTTATACCAAA
1 GGCCAACATATGCCAATGGTGGTCGAGGTAGGTGCCCATACCAAA
* * *
15959098 GGCCATCTTATGCCAATGGTGGTTGAGGTAGGTGCCCATACCAAA
1 GGCCAACATATGCCAATGGTGGTCGAGGTAGGTGCCCATACCAAA
15959143 GG
1 GG
15959145 GTAACTTGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (45 bp):
GGCCAACATATGCCAATGGTGGTCGAGGTAGGTGCCCATACCAAA
Found at i:15967313 original size:45 final size:44
Alignment explanation
Indices: 15967174--15967314 Score: 113
Period size: 45 Copynumber: 3.1 Consensus size: 44
15967164 AGATCTAGAT
* * * * *
15967174 TGTGCCAATGTTGATCGAGGCATATGCCCTTACCAAGGGGTAGCA
1 TGTGCCAATGATGATCGAGGTATGTGCCCATACCAA-GGCTAGCA
* * * * * * *
15967219 TGTGCCTAT-AGTGTTTGAGGTAGGTGCCCATATCAAAGGCCAGCT
1 TGTGCCAATGA-TGATCGAGGTATGTGCCCATA-CCAAGGCTAGCA
* *
15967264 TGTGCCAATGATGGTCGAGGTATGTGCCCATACCATGCGCTAGCA
1 TGTGCCAATGATGATCGAGGTATGTGCCCATACCAAG-GCTAGCA
15967309 TGTGCC
1 TGTGCC
15967315 TATAATGTTG
Statistics
Matches: 72, Mismatches: 20, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
44 3 0.04
45 65 0.90
46 4 0.06
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (44 bp):
TGTGCCAATGATGATCGAGGTATGTGCCCATACCAAGGCTAGCA
Found at i:15969114 original size:15 final size:15
Alignment explanation
Indices: 15969090--15969119 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15969080 GTCCCAATAA
*
15969090 TGATTGAGGCATGTG
1 TGATTAAGGCATGTG
15969105 TGATTAAGGCATGTG
1 TGATTAAGGCATGTG
15969120 CATGTGTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.37, T:0.33
Consensus pattern (15 bp):
TGATTAAGGCATGTG
Found at i:15984742 original size:31 final size:31
Alignment explanation
Indices: 15984707--15984765 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
15984697 TGGTCAAGAT
* *
15984707 AGGTGCAAGTAGCAAAGGCCAGCTTGTGTTA
1 AGGTGCAAGTACCAAAGGCCAACTTGTGTTA
* *
15984738 AGGTGTATGTACCAAAGGCCAACTTGTG
1 AGGTGCAAGTACCAAAGGCCAACTTGTG
15984766 CCAATGTTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (31 bp):
AGGTGCAAGTACCAAAGGCCAACTTGTGTTA
Found at i:15987487 original size:20 final size:21
Alignment explanation
Indices: 15987464--15987502 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
15987454 TATGAGAGGA
15987464 AAAGGA-TGAATCTCAGTGAC
1 AAAGGATTGAATCTCAGTGAC
15987484 AAAGGATTGAATCTCAGTG
1 AAAGGATTGAATCTCAGTG
15987503 GCTCATAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (21 bp):
AAAGGATTGAATCTCAGTGAC
Found at i:15996990 original size:7 final size:7
Alignment explanation
Indices: 15996980--15997011 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
15996970 CAAGGCCAAA
15996980 GGGGCTT
1 GGGGCTT
15996987 GGGGCTT
1 GGGGCTT
15996994 GGGGCTT
1 GGGGCTT
15997001 GGGGCTT
1 GGGGCTT
15997008 GGGG
1 GGGG
15997012 TATGAAGGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.12, G:0.62, T:0.25
Consensus pattern (7 bp):
GGGGCTT
Found at i:16010508 original size:45 final size:45
Alignment explanation
Indices: 16010427--16010530 Score: 111
Period size: 45 Copynumber: 2.3 Consensus size: 45
16010417 GGGTTTGTAG
* * * * *
16010427 GTGCTGATGGTGGTTGAAGCATGTGCCCACACCAAGGCCT-GTCAT
1 GTGCCGATGGTGTTTGAAGCAAGTACCCACAACAAGGCCTAG-CAT
* * * *
16010472 GTGTCGATGGTGTTTGAAGCAAGTACCTAGAACAAGGGCTAGCAT
1 GTGCCGATGGTGTTTGAAGCAAGTACCCACAACAAGGCCTAGCAT
16010517 GTGCCGATGGTGTT
1 GTGCCGATGGTGTT
16010531 CAAGGCAACT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
45 47 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (45 bp):
GTGCCGATGGTGTTTGAAGCAAGTACCCACAACAAGGCCTAGCAT
Found at i:16029876 original size:24 final size:24
Alignment explanation
Indices: 16029844--16029889 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
16029834 ACACAATTGA
*
16029844 ATGCTCGTGCTTAGGCTTATTATC
1 ATGCTCGTGCCTAGGCTTATTATC
*
16029868 ATGCTCGTGCCTAGGTTTATTA
1 ATGCTCGTGCCTAGGCTTATTA
16029890 AAAAGCTACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (24 bp):
ATGCTCGTGCCTAGGCTTATTATC
Found at i:16064312 original size:24 final size:26
Alignment explanation
Indices: 16064266--16064321 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
16064256 TTTTCAAGCT
16064266 AAAAATACCTTCAATAATCTCCTTA-
1 AAAAATACCTTCAATAATCTCCTTAC
* *
16064291 AAAAATGCCTTGAATAAT-TCCTTAC
1 AAAAATACCTTCAATAATCTCCTTAC
16064316 AAAAAT
1 AAAAAT
16064322 TTAATGGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 6 0.21
25 22 0.79
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (26 bp):
AAAAATACCTTCAATAATCTCCTTAC
Found at i:16064368 original size:61 final size:61
Alignment explanation
Indices: 16064318--16064431 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 61
16064308 TTCCTTACAA
16064318 AAATTTAATG-GG-G-TTATTCAAGGCATTTATAGCCAAAAA-CACCTTCAATAATCCACTTC
1 AAATTTAATGAGGTGATTATTCAAGGCATTTATA-CCAAAAATC-CCTTCAATAATCCACTTC
* * *
16064377 AATTTTTATGAGGTGATTATTCAAGGCATTTTTACCAAAAATCCCTTCAATAATC
1 AAATTTAATGAGGTGATTATTCAAGGCATTTATACCAAAAATCCCTTCAATAATC
16064432 TCTAATTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
59 8 0.17
60 2 0.04
61 20 0.42
62 18 0.38
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.34
Consensus pattern (61 bp):
AAATTTAATGAGGTGATTATTCAAGGCATTTATACCAAAAATCCCTTCAATAATCCACTTC
Found at i:16064804 original size:63 final size:62
Alignment explanation
Indices: 16064649--16064806 Score: 167
Period size: 63 Copynumber: 2.5 Consensus size: 62
16064639 ATTTTCTAAG
** ** * *
16064649 CAAAAATGCCTTGAATAAT--CTAAAAACAAAATTGGAGGGGATTATTCAAGGCATTTTTGGC
1 CAAAAATGCCTTGAATAATCCCTAAAAA-AAAATTAAAAAGGATTATTCAAGACACTTTTGGC
** * **
16064710 CAAAAACACCTTAAATAATCCCATAGTAAAAAATTAAAAAGGATTATTCAAGACACTTTTGGC
1 CAAAAATGCCTTGAATAATCCC-TAAAAAAAAATTAAAAAGGATTATTCAAGACACTTTTGGC
* *
16064773 CAAAAATGCCTTGAATAATCCCTTACAAAAAATT
1 CAAAAATGCCTTGAATAATCCCTAAAAAAAAATT
16064807 TAATGGGGTT
Statistics
Matches: 77, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
61 16 0.21
62 9 0.12
63 48 0.62
64 4 0.05
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.27
Consensus pattern (62 bp):
CAAAAATGCCTTGAATAATCCCTAAAAAAAAATTAAAAAGGATTATTCAAGACACTTTTGGC
Found at i:16065447 original size:15 final size:16
Alignment explanation
Indices: 16065427--16065460 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
16065417 GATCTCTGTC
*
16065427 ATATAATTTTTA-ATG
1 ATATAAATTTTATATG
16065442 ATATAAATTTTATATG
1 ATATAAATTTTATATG
16065458 ATA
1 ATA
16065461 ATTTGTAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (16 bp):
ATATAAATTTTATATG
Found at i:16078804 original size:116 final size:116
Alignment explanation
Indices: 16078600--16078831 Score: 419
Period size: 116 Copynumber: 2.0 Consensus size: 116
16078590 TGGTTAAAGC
* * *
16078600 ATGTACATGTGTAATGGTAATCAAGCTAGACCAAGATAAGAGGTTCTTTTTTAGTCAAGTAGCAA
1 ATGTACATGTGTAATGGTAATCAAACTAGACCAAGATAAGAGGTTCTCTTTGAGTCAAGTAGCAA
*
16078665 TTCTAGTTCTAGTAGGATAGGGTCTATCAGCCAGAAGGACTAGGCCTTGAG
66 TTCTAGTTCTAGTAGAATAGGGTCTATCAGCCAGAAGGACTAGGCCTTGAG
16078716 ATGTACATGTGTAATGGTAATCAAACTAGACCAAGATAAGAGGTTCTCTTTGAGTCAAGTAGCAA
1 ATGTACATGTGTAATGGTAATCAAACTAGACCAAGATAAGAGGTTCTCTTTGAGTCAAGTAGCAA
*
16078781 TTCTAGTTCTAGTAGAATAGGGTCTATCAGCTAGAAGGACTAGGCCTTGAG
66 TTCTAGTTCTAGTAGAATAGGGTCTATCAGCCAGAAGGACTAGGCCTTGAG
16078832 GCATACTGGA
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 111 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (116 bp):
ATGTACATGTGTAATGGTAATCAAACTAGACCAAGATAAGAGGTTCTCTTTGAGTCAAGTAGCAA
TTCTAGTTCTAGTAGAATAGGGTCTATCAGCCAGAAGGACTAGGCCTTGAG
Found at i:16096413 original size:118 final size:118
Alignment explanation
Indices: 16096200--16096416 Score: 274
Period size: 118 Copynumber: 1.8 Consensus size: 118
16096190 AATGGTGTTC
* * * ** * *
16096200 GAAGCTTGTGCCAAGACCAAGGTTCAACATGTCTCAATGGTGGTTGAGCCATGTGTATGCGTCAC
1 GAAGCATGTGCCAAAACCAAGGTTCAACATGTCCCAATGGTGGTCCAGCCATATGCATGCGTCAC
* * *
16096265 AATCTACAAGCTGGTCCAGGCCTAAAGGTTCTCTCTGAGTCAAGGAGCAAGTT
66 AATCCACAAGCTAGTCCAGGCCCAAAGGTTCTCTCTGAGTCAAGGAGCAAGTT
* *
16096318 GAAGCATGTGCCAAAACCAAGGTTCAACATGTCCCGATGGTGGTCCATG-CATATGCATGTGTCA
1 GAAGCATGTGCCAAAACCAAGGTTCAACATGTCCCAATGGTGGTCCA-GCCATATGCATGCGTCA
* * **
16096382 CAATCCATAAGCTAGTCTAGGCCCAGGGGTTCTCT
65 CAATCCACAAGCTAGTCCAGGCCCAAAGGTTCTCT
16096417 TCGTGTAAAG
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
118 81 0.99
119 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (118 bp):
GAAGCATGTGCCAAAACCAAGGTTCAACATGTCCCAATGGTGGTCCAGCCATATGCATGCGTCAC
AATCCACAAGCTAGTCCAGGCCCAAAGGTTCTCTCTGAGTCAAGGAGCAAGTT
Found at i:16143045 original size:31 final size:31
Alignment explanation
Indices: 16143007--16143068 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
16142997 CATATAGCCC
16143007 TAGTTCTCATGATATAATCTCATTGTGGCAT
1 TAGTTCTCATGATATAATCTCATTGTGGCAT
*
16143038 TAGTTCTCATGATATTATCTCATTGTGGCAT
1 TAGTTCTCATGATATAATCTCATTGTGGCAT
16143069 GGTGAAAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (31 bp):
TAGTTCTCATGATATAATCTCATTGTGGCAT
Found at i:16148954 original size:13 final size:13
Alignment explanation
Indices: 16148936--16148960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16148926 TTGGCATCCA
16148936 TAAAAAATTGAAC
1 TAAAAAATTGAAC
16148949 TAAAAAATTGAA
1 TAAAAAATTGAA
16148961 GTGTAGAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.08, T:0.24
Consensus pattern (13 bp):
TAAAAAATTGAAC
Found at i:16152996 original size:114 final size:114
Alignment explanation
Indices: 16152792--16153020 Score: 422
Period size: 114 Copynumber: 2.0 Consensus size: 114
16152782 CTAATGCCAG
*
16152792 TAGCTGCAGTAATTCTAGCTCCAATAGTTATATTTAAGTTGTTGTAGTTAAAAAGCTCGTAGTTA
1 TAGCTACAGTAATTCTAGCTCCAATAGTTATATTTAAGTTGTTGTAGTTAAAAAGCTCGTAGTTA
*
16152857 GAACTAAGGCTGGGTCATTTAGTCCACCTCATGGTGAGCACTGATCTAC
66 GAACTAAGGCTGGGTCATTTAGTCCACCTCATAGTGAGCACTGATCTAC
16152906 TAGCTACAGTAATTCTAGCTCCAATAGTTATATTTAAGTTGTTGTAGTTAAAAAGCTCGTAGTTA
1 TAGCTACAGTAATTCTAGCTCCAATAGTTATATTTAAGTTGTTGTAGTTAAAAAGCTCGTAGTTA
* *
16152971 GAACTAAGGTTGGGTCATTTGGTCCACCTCATAGTGAGCACTGATCTAC
66 GAACTAAGGCTGGGTCATTTAGTCCACCTCATAGTGAGCACTGATCTAC
16153020 T
1 T
16153021 TGTCCCTACT
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 111 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (114 bp):
TAGCTACAGTAATTCTAGCTCCAATAGTTATATTTAAGTTGTTGTAGTTAAAAAGCTCGTAGTTA
GAACTAAGGCTGGGTCATTTAGTCCACCTCATAGTGAGCACTGATCTAC
Found at i:16161658 original size:66 final size:66
Alignment explanation
Indices: 16161552--16161689 Score: 258
Period size: 66 Copynumber: 2.1 Consensus size: 66
16161542 GGCTTGCATG
*
16161552 CCATGCATGGATATCCTTGGTCGGGGCCATGTAGTTGGTGGGTTCAAGCATATCTTCATATTTTT
1 CCATGCATGGATATCCTTAGTCGGGGCCATGTAGTTGGTGGGTTCAAGCATATCTTCATATTTTT
16161617 T
66 T
*
16161618 CCATGCATGGATATCCTTAGTCGGGGCCATGTAGTTGGTGGGTTCAGGCATATCTTCATATTTTT
1 CCATGCATGGATATCCTTAGTCGGGGCCATGTAGTTGGTGGGTTCAAGCATATCTTCATATTTTT
16161683 T
66 T
16161684 CCATGC
1 CCATGC
16161690 CAATGCCATT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.37
Consensus pattern (66 bp):
CCATGCATGGATATCCTTAGTCGGGGCCATGTAGTTGGTGGGTTCAAGCATATCTTCATATTTTT
T
Found at i:16164035 original size:15 final size:14
Alignment explanation
Indices: 16164015--16164044 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
16164005 GTTAGTCTAC
16164015 CATATATATATTTTT
1 CATATATAT-TTTTT
16164030 CATATATATTTTTT
1 CATATATATTTTTT
16164044 C
1 C
16164045 TCTTAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (14 bp):
CATATATATTTTTT
Done.