genome.fa.s20.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167845.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_116, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80777

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4010--4057	13	3.8	12	83	10	51	75	2	2	20	1.02
5637--5722	43	2.0	43	100	0	172	32	18	13	34	1.90
7107--7166	21	3.0	20	73	9	59	28	21	18	31	1.97
9870--9902	15	2.1	16	88	5	50	66	0	30	3	1.06
10419--10610	103	1.8	103	83	8	255	41	7	11	39	1.70
24179--24235	25	2.3	25	85	8	73	38	0	8	52	1.33
24175--24232	15	3.8	15	74	19	57	39	0	8	51	1.33
24223--24254	3	10.7	3	100	0	64	31	0	0	68	0.90
24822--24867	19	2.4	19	92	0	74	32	13	15	39	1.85
25151--25223	5	15.0	5	72	21	57	15	2	4	78	1.02
25139--25212	22	3.4	21	77	5	67	13	6	1	78	1.01
25151--25224	27	2.7	27	72	4	78	14	2	4	78	1.01
25161--25242	35	2.3	35	80	10	87	18	2	6	73	1.15
25279--25361	41	2.0	43	88	11	127	62	7	8	21	1.48
25279--25383	41	2.5	39	83	10	120	59	7	8	24	1.53
25277--25369	41	2.2	41	84	9	125	62	6	9	21	1.48
25996--26073	11	7.4	10	73	15	52	76	1	5	16	1.02
26001--26041	18	2.3	18	95	0	73	78	0	7	14	0.96
25984--26058	8	8.6	8	74	20	62	77	1	6	14	1.04
25999--26122	18	6.8	18	73	17	64	73	2	3	20	1.09
27015--27127	4	29.2	4	71	13	53	65	1	1	30	1.13
26950--27130	34	5.7	30	72	18	118	64	2	3	28	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27052--27106	28	2.0	28	92	0	92	69	0	0	30	0.89
27019--27141	23	5.3	24	72	20	84	64	2	1	31	1.16
27015--27122	22	5.0	22	70	18	68	64	1	1	31	1.14
27022--27130	28	4.0	26	72	20	73	65	1	1	31	1.14
27426--27468	6	6.8	6	79	10	50	0	2	13	83	0.74
27427--27471	19	2.5	18	86	13	58	0	2	13	84	0.72
27479--27756	41	6.9	42	84	10	375	35	23	16	23	1.95
27622--27687	32	2.0	33	97	2	125	34	24	13	27	1.93
27654--27754	42	2.4	42	96	0	184	37	22	17	21	1.94
27540--27754	116	1.9	114	95	1	385	36	22	16	24	1.94
29034--29073	11	3.6	11	89	0	62	2	12	0	85	0.71
29064--29101	19	2.0	19	90	10	60	7	21	0	71	1.11
33217--33255	21	1.9	20	89	5	60	79	10	0	10	0.94
34189--34243	28	2.0	28	92	0	92	69	0	0	30	0.89
34164--34278	23	4.8	25	73	18	77	63	2	1	32	1.18
34215--34259	22	2.0	22	83	8	56	62	2	0	35	1.08
34189--34267	25	3.0	26	73	25	69	67	1	0	31	0.99
38907--38939	14	2.5	13	90	9	57	36	0	3	60	1.12
38982--39017	17	2.0	19	89	10	58	47	2	11	38	1.54
39362--39399	20	1.9	20	89	10	60	76	2	0	21	0.91
39363--39408	25	1.9	23	91	8	74	78	2	0	19	0.86
39470--39494	4	6.2	4	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41652--41773	60	2.0	60	84	3	156	31	10	7	50	1.65
41752--41785	15	2.3	15	89	0	50	29	0	0	70	0.87
41708--41915	75	2.9	71	84	8	258	32	10	6	51	1.60
41851--41956	56	1.9	56	86	7	153	28	15	8	48	1.74
41708--41915	74	2.9	70	83	8	263	32	10	6	51	1.60
41842--41972	56	2.3	55	80	12	151	31	12	8	48	1.70
41958--42112	57	2.6	58	85	10	190	38	5	5	49	1.51
42544--42588	19	2.3	19	84	3	54	60	11	15	13	1.60
42771--42799	14	2.0	15	93	6	51	3	13	0	82	0.79
43002--43103	11	9.1	11	72	16	50	73	2	3	19	1.12
43016--43123	21	5.3	20	67	18	53	70	1	3	24	1.13
43008--43075	27	2.6	27	80	11	70	73	1	2	22	1.05
43037--43101	25	2.6	24	79	15	71	75	3	4	16	1.10
46578--46622	21	2.1	21	84	8	56	20	2	2	75	1.01
46612--46685	15	4.8	15	78	14	71	25	2	0	71	0.99
46633--46677	18	2.6	17	89	10	65	31	2	0	66	1.04
47693--47813	56	2.2	56	85	8	158	49	8	13	28	1.70
47786--47923	69	2.1	68	85	8	185	52	6	7	34	1.55
47883--48006	60	2.0	62	82	3	153	49	8	10	31	1.68
50321--50362	5	8.0	5	80	19	50	19	0	2	78	0.86
50409--50928	117	4.4	116	78	13	432	48	5	10	35	1.61
50421--50927	58	8.6	58	77	14	427	48	5	10	35	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50721--50754	18	1.9	18	88	5	52	38	8	2	50	1.49
50665--50927	120	2.2	116	84	8	327	47	6	9	36	1.62
55492--55565	5	14.0	5	72	20	53	75	5	2	16	1.10
55503--55565	22	2.8	22	83	7	74	76	3	3	17	1.05
55528--55565	11	3.5	11	89	10	60	78	2	0	18	0.86
56445--56484	3	13.3	3	100	0	80	67	0	0	32	0.91
65704--65935	101	2.4	98	75	14	217	38	14	6	39	1.73
67553--67597	4	11.2	4	85	0	63	73	4	0	22	1.01
69663--69724	22	2.9	21	83	9	81	12	6	0	80	0.89
69663--69744	29	2.9	29	85	7	98	10	7	0	81	0.86
69670--69748	21	3.9	19	79	9	77	10	6	0	83	0.80
69663--69745	7	11.9	7	74	16	66	10	7	0	81	0.86
69685--69746	8	7.6	8	76	20	58	9	4	0	85	0.73
80063--80205	55	2.6	56	91	4	229	34	13	9	42	1.76
80345--80675	48	6.4	53	80	15	335	35	10	7	46	1.66
80703--80755	6	8.3	6	76	12	52	79	0	3	16	0.88
80696--80755	26	2.3	26	82	2	75	78	0	5	16	0.92

Tables:   1

The End!