Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 39 of 91
Found at i:6639940 original size:25 final size:25
Alignment explanation
Indices: 6639899--6639946 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
6639889 CTTGAATATT
*
6639899 TGTCATCTAACTTATCTAAAAAAAA
1 TGTCATCTAACTCATCTAAAAAAAA
*
6639924 TGTCATCTCACTCATCTAAAAAA
1 TGTCATCTAACTCATCTAAAAAA
6639947 GTCTAAGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.44, C:0.21, G:0.04, T:0.31
Consensus pattern (25 bp):
TGTCATCTAACTCATCTAAAAAAAA
Found at i:6641002 original size:29 final size:30
Alignment explanation
Indices: 6640960--6641022 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
6640950 TTGAGAATTT
* *
6640960 AATTGAGTGAAAATAAATGTTT-AAGGTTC
1 AATTAAGTGAAAATAAATATTTAAAGGTTC
*
6640989 AATTAAGTGAAAATATATATTTAAAGGTTC
1 AATTAAGTGAAAATAAATATTTAAAGGTTC
6641019 AATT
1 AATT
6641023 GGATAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.37
Consensus pattern (30 bp):
AATTAAGTGAAAATAAATATTTAAAGGTTC
Found at i:6646035 original size:20 final size:18
Alignment explanation
Indices: 6646010--6646052 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
6646000 ATGGGATCAA
*
6646010 GTTAGTGTTCGAGTTTGGGG
1 GTTAGT-TTAGAGTTT-GGG
*
6646030 GTTAGTTTAGGGTTTGGG
1 GTTAGTTTAGAGTTTGGG
6646048 GTTAG
1 GTTAG
6646053 GGTTTGTGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 7 0.33
20 6 0.29
ACGTcount: A:0.12, C:0.02, G:0.44, T:0.42
Consensus pattern (18 bp):
GTTAGTTTAGAGTTTGGG
Found at i:6648191 original size:7 final size:7
Alignment explanation
Indices: 6648179--6648223 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
6648169 GTTTGAAAGG
6648179 TTTTTGT
1 TTTTTGT
6648186 TTTTTGT
1 TTTTTGT
*
6648193 TGTTTG-
1 TTTTTGT
6648199 TTTTTGT
1 TTTTTGT
*
6648206 GTTTTTAT
1 -TTTTTGT
6648214 TTTTTGT
1 TTTTTGT
6648221 TTT
1 TTT
6648224 GAAACACTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 5 0.16
7 21 0.66
8 6 0.19
ACGTcount: A:0.02, C:0.00, G:0.16, T:0.82
Consensus pattern (7 bp):
TTTTTGT
Found at i:6648203 original size:15 final size:14
Alignment explanation
Indices: 6648178--6648223 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
6648168 TGTTTGAAAG
6648178 GTTTTTG-TTTTTT
1 GTTTTTGTTTTTTT
*
6648191 GTTGTTTGTTTTTGT
1 GTT-TTTGTTTTTTT
*
6648206 GTTTTT-ATTTTTT
1 GTTTTTGTTTTTTT
6648219 GTTTT
1 GTTTT
6648224 GAAACACTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 13 0.46
14 7 0.25
15 8 0.29
ACGTcount: A:0.02, C:0.00, G:0.17, T:0.80
Consensus pattern (14 bp):
GTTTTTGTTTTTTT
Found at i:6648223 original size:13 final size:13
Alignment explanation
Indices: 6648178--6648223 Score: 65
Period size: 14 Copynumber: 3.4 Consensus size: 13
6648168 TGTTTGAAAG
6648178 GTTTTTGTTTTTT
1 GTTTTTGTTTTTT
6648191 GTTGTTTGTTTTTGT
1 GTT-TTTGTTTTT-T
*
6648206 GTTTTTATTTTTT
1 GTTTTTGTTTTTT
6648219 GTTTT
1 GTTTT
6648224 GAAACACTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 9 0.30
14 17 0.57
15 4 0.13
ACGTcount: A:0.02, C:0.00, G:0.17, T:0.80
Consensus pattern (13 bp):
GTTTTTGTTTTTT
Found at i:6648545 original size:22 final size:22
Alignment explanation
Indices: 6648510--6648562 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
6648500 ATTCAGTTTA
6648510 AAAGACTTACGAATCTTGCTCG
1 AAAGACTTACGAATCTTGCTCG
* *
6648532 AAGGACTTATGAATCTTGCTCG
1 AAAGACTTACGAATCTTGCTCG
6648554 AAAGACTTA
1 AAAGACTTA
6648563 AAGATTGTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (22 bp):
AAAGACTTACGAATCTTGCTCG
Found at i:6648619 original size:105 final size:105
Alignment explanation
Indices: 6648431--6648634 Score: 239
Period size: 105 Copynumber: 1.9 Consensus size: 105
6648421 AGCTCAAAAA
* * ** * **
6648431 ACTTATGAATCTTACCTGAAAAACTTAGAGACTATACCCATAGGTCTTATTAGTCTTGACCTAAA
1 ACTTATGAATCTTACCTGAAAAACTTAAAGACTATACCCAAAGGTCTTACAAATCTCAACCTAAA
* *
6648496 ACAAATTCAGTTTAAAAGACTTACGAATCTTGCTCGAAGG
66 ACAAATTCAGCTTAAAAGACTTACAAATCTTGCTCGAAGG
* * * *
6648536 ACTTATGAATCTT-GCTCGAAAGACTTAAAGATTGTACCCAAAGGTCTTACAAATCTCAACCTAA
1 ACTTATGAATCTTACCT-GAAAAACTTAAAGACTATACCCAAAGGTCTTACAAATCTCAACCTAA
* * * *
6648600 AATAAATTTAGCTTGAAAGACTTATAAATCTTGCT
65 AACAAATTCAGCTTAAAAGACTTACAAATCTTGCT
6648635 TGGAGATCTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
104 2 0.02
105 79 0.98
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (105 bp):
ACTTATGAATCTTACCTGAAAAACTTAAAGACTATACCCAAAGGTCTTACAAATCTCAACCTAAA
ACAAATTCAGCTTAAAAGACTTACAAATCTTGCTCGAAGG
Found at i:6648908 original size:40 final size:39
Alignment explanation
Indices: 6648864--6648977 Score: 111
Period size: 40 Copynumber: 2.9 Consensus size: 39
6648854 CCTGAAGATT
*
6648864 TTGGAAATTGTTTAGAAATTTAAGATTTTGCCCAAAGGTC
1 TTGGAAATTGTTTAAAAATTTAAGATTTTGCCCAAA-GTC
** * ****
6648904 TTGGAAATCATTTAAAAATTTAATATTTTGTGTGGAAGTC
1 TTGGAAATTGTTTAAAAATTTAAGATTTTG-CCCAAAGTC
* * *
6648944 TTGGAAATTGTTAAAAAAGTTAAGGTTTTGCCCA
1 TTGGAAATTGTTTAAAAATTTAAGATTTTGCCCA
6648978 GATTCAAAAA
Statistics
Matches: 55, Mismatches: 18, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
40 53 0.96
41 2 0.04
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (39 bp):
TTGGAAATTGTTTAAAAATTTAAGATTTTGCCCAAAGTC
Found at i:6650501 original size:3 final size:3
Alignment explanation
Indices: 6650495--6650524 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
6650485 ATGTATTACC
6650495 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6650525 CTGCTACTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:6655289 original size:11 final size:12
Alignment explanation
Indices: 6655273--6655303 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
6655263 ATGAACAGTG
6655273 AAAAAAAAA-GA
1 AAAAAAAAAGGA
6655284 AAAAAAAAAGGA
1 AAAAAAAAAGGA
6655296 AAAAAAAA
1 AAAAAAAA
6655304 TTGATGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGGA
Found at i:6659275 original size:15 final size:16
Alignment explanation
Indices: 6659247--6659282 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
6659237 AAACTATATG
6659247 TTAAAAGAAAATTTTT
1 TTAAAAGAAAATTTTT
*
6659263 TTAAAAGAAATTTTTT
1 TTAAAAGAAAATTTTT
6659279 TTAA
1 TTAA
6659283 TTATTTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (16 bp):
TTAAAAGAAAATTTTT
Found at i:6660425 original size:7 final size:7
Alignment explanation
Indices: 6660413--6660520 Score: 113
Period size: 7 Copynumber: 16.4 Consensus size: 7
6660403 TTAGGGCTTT
*
6660413 GGTTTAA
1 GGTTTAG
*
6660420 GGTTTAA
1 GGTTTAG
6660427 GGTTTAG
1 GGTTTAG
* *
6660434 GATTAAG
1 GGTTTAG
6660441 GGTTT-G
1 GGTTTAG
6660447 GGTTTAG
1 GGTTTAG
6660454 GGTTT-G
1 GGTTTAG
6660460 GGTTTAG
1 GGTTTAG
6660467 GGTTTA-
1 GGTTTAG
6660473 GGTTTAG
1 GGTTTAG
6660480 GGTTT-G
1 GGTTTAG
6660486 GGTTTAG
1 GGTTTAG
6660493 GGTTTA-
1 GGTTTAG
* *
6660499 -ATTTTG
1 GGTTTAG
6660505 GGTTT-G
1 GGTTTAG
6660511 GGTTTAG
1 GGTTTAG
6660518 GGT
1 GGT
6660521 GAAATTTCAT
Statistics
Matches: 86, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
5 3 0.03
6 30 0.35
7 53 0.62
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:6660441 original size:13 final size:13
Alignment explanation
Indices: 6660413--6660520 Score: 119
Period size: 13 Copynumber: 8.2 Consensus size: 13
6660403 TTAGGGCTTT
*
6660413 GGTTTAAGGTTTAA
1 GGTTT-AGGTTTAG
*
6660427 GGTTTAGGATTAAG
1 GGTTTAGG-TTTAG
*
6660441 GGTTTGGGTTTAG
1 GGTTTAGGTTTAG
*
6660454 GGTTTGGGTTTAG
1 GGTTTAGGTTTAG
6660467 GGTTTAGGTTTAG
1 GGTTTAGGTTTAG
*
6660480 GGTTTGGGTTTAG
1 GGTTTAGGTTTAG
* *
6660493 GGTTTA-ATTTTG
1 GGTTTAGGTTTAG
*
6660505 GGTTTGGGTTTAG
1 GGTTTAGGTTTAG
6660518 GGT
1 GGT
6660521 GAAATTTCAT
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
12 9 0.11
13 56 0.70
14 15 0.19
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (13 bp):
GGTTTAGGTTTAG
Found at i:6660451 original size:6 final size:6
Alignment explanation
Indices: 6660440--6660520 Score: 81
Period size: 6 Copynumber: 12.7 Consensus size: 6
6660430 TTAGGATTAA
*
6660440 GGGTTT GGGTTT AGGGTTT GGGTTT AGGGTTT AGGTTT AGGGTTT GGGTTT
1 GGGTTT GGGTTT -GGGTTT GGGTTT -GGGTTT GGGTTT -GGGTTT GGGTTT
***
6660491 AGGGTTT AATTTT GGGTTT GGGTTT AGGGT
1 -GGGTTT GGGTTT GGGTTT GGGTTT -GGGT
6660521 GAAATTTCAT
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
6 35 0.56
7 27 0.44
ACGTcount: A:0.10, C:0.00, G:0.43, T:0.47
Consensus pattern (6 bp):
GGGTTT
Found at i:6660476 original size:26 final size:26
Alignment explanation
Indices: 6660413--6660520 Score: 137
Period size: 26 Copynumber: 4.1 Consensus size: 26
6660403 TTAGGGCTTT
* * *
6660413 GGTTTAAGGTTTAAGGTTTAGGATTAAG
1 GGTTT-AGGTTTAGGGTTT-GGGTTTAG
*
6660441 GGTTTGGGTTTAGGGTTTGGGTTTAG
1 GGTTTAGGTTTAGGGTTTGGGTTTAG
6660467 GGTTTAGGTTTAGGGTTTGGGTTTAG
1 GGTTTAGGTTTAGGGTTTGGGTTTAG
* *
6660493 GGTTTA-ATTTTGGGTTTGGGTTTAG
1 GGTTTAGGTTTAGGGTTTGGGTTTAG
6660518 GGT
1 GGT
6660521 GAAATTTCAT
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
25 20 0.27
26 37 0.51
27 11 0.15
28 5 0.07
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (26 bp):
GGTTTAGGTTTAGGGTTTGGGTTTAG
Found at i:6660526 original size:25 final size:25
Alignment explanation
Indices: 6660449--6660527 Score: 104
Period size: 25 Copynumber: 3.1 Consensus size: 25
6660439 AGGGTTTGGG
**
6660449 TTTAGGGTTTGGGTTTAGGGTTTAGG
1 TTTAGGGTTTGGGTTTAGGG-TTAAA
*
6660475 TTTAGGGTTTGGGTTTAGGGTTTAA
1 TTTAGGGTTTGGGTTTAGGGTTAAA
* *
6660500 TTTTGGGTTTGGGTTTAGGGTGAAA
1 TTTAGGGTTTGGGTTTAGGGTTAAA
6660525 TTT
1 TTT
6660528 CATCAAACAC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 27 0.57
26 20 0.43
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (25 bp):
TTTAGGGTTTGGGTTTAGGGTTAAA
Found at i:6664820 original size:3 final size:3
Alignment explanation
Indices: 6664812--6664864 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
6664802 TTATATCAGC
6664812 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6664860 AAT AA
1 AAT AA
6664865 AGTAAGCAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6671598 original size:18 final size:19
Alignment explanation
Indices: 6671575--6671617 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
6671565 AATTCAATTA
6671575 AAATCAAA-TAAATT-GATT
1 AAATCAAACT-AATTAGATT
6671593 AAATCAAACTAATTAGATT
1 AAATCAAACTAATTAGATT
6671612 -AATCAA
1 AAATCAA
6671618 TTGACCATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (19 bp):
AAATCAAACTAATTAGATT
Found at i:6672641 original size:15 final size:14
Alignment explanation
Indices: 6672621--6672659 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
6672611 TTCCAAAAAC
*
6672621 TTTTTATTGTTTTTA
1 TTTTTATT-TTGTTA
6672636 TTTTTATTTTGTTA
1 TTTTTATTTTGTTA
6672650 TTATTTATTT
1 TT-TTTATTT
6672660 ACTACTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.79
Consensus pattern (14 bp):
TTTTTATTTTGTTA
Found at i:6672733 original size:3 final size:3
Alignment explanation
Indices: 6672725--6672765 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
6672715 TTATGGTGCC
6672725 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
6672766 GCCAAATAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6674666 original size:7 final size:7
Alignment explanation
Indices: 6674619--6674660 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
6674609 TAAAACTTTC
6674619 TTTTTTG
1 TTTTTTG
*
6674626 TGTTTTG
1 TTTTTTG
6674633 TTTTTTG
1 TTTTTTG
*
6674640 TTTCTTTA
1 TTT-TTTG
6674648 TTTTTTG
1 TTTTTTG
6674655 TTTTTT
1 TTTTTT
6674661 TCTTTTCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 24 0.80
8 6 0.20
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.83
Consensus pattern (7 bp):
TTTTTTG
Found at i:6674666 original size:15 final size:15
Alignment explanation
Indices: 6674615--6674666 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
6674605 CTCCTAAAAC
*
6674615 TTTCTTTTTTG-TGT
1 TTTCTTTTTTGTTTT
* *
6674629 TTTGTTTTTTGTTTC
1 TTTCTTTTTTGTTTT
*
6674644 TTTATTTTTTGTTTT
1 TTTCTTTTTTGTTTT
6674659 TTTCTTTT
1 TTTCTTTT
6674667 CAAAAAATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
14 10 0.32
15 21 0.68
ACGTcount: A:0.02, C:0.06, G:0.10, T:0.83
Consensus pattern (15 bp):
TTTCTTTTTTGTTTT
Found at i:6674798 original size:35 final size:36
Alignment explanation
Indices: 6674759--6674907 Score: 108
Period size: 35 Copynumber: 4.2 Consensus size: 36
6674749 GAATTACCGA
* * * *
6674759 ACAACACCATAAGTTG-ATAATAAAGAGAGACTAGG
1 ACAACACCACAAGTTGAAAAATAAAGAGAGACCAAG
*
6674794 ACAACACCACAAGTTGAAAAATAAAGAGCGACCAAG
1 ACAACACCACAAGTTGAAAAATAAAGAGAGACCAAG
** * * * ****
6674830 ACAACATTACAAG-TAAAAAATAAGGAGTGATTGGG
1 ACAACACCACAAGTTGAAAAATAAAGAGAGACCAAG
* * *
6674865 ACAACACCACAAG-TCAGAAATAAGGA-ATGACCAAG
1 ACAACACCACAAGTTGAAAAATAAAGAGA-GACCAAG
6674900 ACAACACC
1 ACAACACC
6674908 TCAACTCAAG
Statistics
Matches: 89, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
35 63 0.71
36 26 0.29
ACGTcount: A:0.50, C:0.19, G:0.18, T:0.13
Consensus pattern (36 bp):
ACAACACCACAAGTTGAAAAATAAAGAGAGACCAAG
Found at i:6675194 original size:35 final size:33
Alignment explanation
Indices: 6675155--6675266 Score: 104
Period size: 35 Copynumber: 3.3 Consensus size: 33
6675145 GTTAAACTAA
6675155 GCTTAAATTATTTTATGGGGTGCTAGCTAAATTGG
1 GCTTAAATT-TTTTAT-GGGTGCTAGCTAAATTGG
* * * *
6675190 GCTTAAATCTTTTCATTGGGTGCCAGATAAACTT-A
1 GCTTAAAT-TTTTTA-TGGGTGCTAGCTAAA-TTGG
* *
6675225 G-TTTAA-TTTTTATGAGTGCTAGCTAAATTGG
1 GCTTAAATTTTTTATGGGTGCTAGCTAAATTGG
6675256 GCTTAAATTTT
1 GCTTAAATTTT
6675267 CCTTAATGCC
Statistics
Matches: 60, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
30 2 0.03
31 13 0.22
32 9 0.15
33 3 0.05
34 4 0.07
35 25 0.42
36 4 0.07
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.42
Consensus pattern (33 bp):
GCTTAAATTTTTTATGGGTGCTAGCTAAATTGG
Found at i:6675384 original size:101 final size:98
Alignment explanation
Indices: 6675096--6675427 Score: 260
Period size: 101 Copynumber: 3.3 Consensus size: 98
6675086 TGAACTTAAT
* * * * * * * * *
6675096 TTTTCATGATGTGCCAAGTAATCTGGGCTAAATTTTTCATCGAATGCTAGTTAAACTAAGCTTAA
1 TTTTCATGAGGTGCCAAATAAACTAGGCTTAATTTTT-AT-GAGTACTAGCTAAACTAGGCTTAA
* *
6675161 ATTATT-TTATGGGGTGCTAGCTAAATTGGGCTTAAATC
64 ATT-TTCCT-T--GGTGCTAGCCAAATTGGGCTTAAATC
* * * * *
6675199 TTTTCATTG-GGTGCCAGATAAACTTA-GTTTAATTTTTATGAGTGCTAGCTAAATTGGGCTTAA
1 TTTTCA-TGAGGTGCCAAATAAAC-TAGGCTTAATTTTTATGAGTACTAGCTAAACTAGGCTTAA
** *
6675262 ATTTTCCTTAATGCCAGCCAAATTGGGCTTAAATC
64 ATTTTCCTTGGTGCTAGCCAAATTGGGCTTAAATC
* * *
6675297 TTTTTCACGAGGTGCCAAATAAACTAGGCTTAATAGTTTTCATG-TTATTAGCTAAACTAGGCTT
1 -TTTTCATGAGGTGCCAAATAAACTAGGCTTAAT--TTTT-ATGAGTACTAGCTAAACTAGGCTT
* * * *
6675361 AAGTTTTCCTTGGTGCTAACCAAATTGTGCTTACATC
62 AAATTTTCCTTGGTGCTAGCCAAATTGGGCTTAAATC
* * *
6675398 TTTTCATGA-GTGCCAACTAAATTGGGCTTA
1 TTTTCATGAGGTGCCAAATAAACTAGGCTTA
6675428 TATCTTTCTT
Statistics
Matches: 184, Mismatches: 36, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
98 25 0.14
99 43 0.23
100 11 0.06
101 72 0.39
102 5 0.03
103 25 0.14
104 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (98 bp):
TTTTCATGAGGTGCCAAATAAACTAGGCTTAATTTTTATGAGTACTAGCTAAACTAGGCTTAAAT
TTTCCTTGGTGCTAGCCAAATTGGGCTTAAATC
Found at i:6676566 original size:17 final size:19
Alignment explanation
Indices: 6676538--6676590 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
6676528 GCTTTCAACC
6676538 TATTCATTTCTTTTCTT-TT
1 TATTC-TTTCTTTTCTTCTT
6676557 T-TTCTTTCTTTATTCTTCTT
1 TATTCTTTC-TT-TTCTTCTT
*
6676577 TATTCTTTTTTTTC
1 TATTCTTTCTTTTC
6676591 CCTTTTTCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 4 0.14
18 5 0.17
19 9 0.31
20 5 0.17
21 6 0.21
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (19 bp):
TATTCTTTCTTTTCTTCTT
Found at i:6678001 original size:20 final size:22
Alignment explanation
Indices: 6677976--6678018 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
6677966 AGACTTAAAA
6677976 TTTTCTC-TTTTTC-TTTTTTT
1 TTTTCTCTTTTTTCATTTTTTT
6677996 TTTTCTCTTTTTTCATTTTTTT
1 TTTTCTCTTTTTTCATTTTTTT
6678018 T
1 T
6678019 AGGCTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.33
21 6 0.29
22 8 0.38
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTCTCTTTTTTCATTTTTTT
Found at i:6678009 original size:21 final size:20
Alignment explanation
Indices: 6677976--6678018 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
6677966 AGACTTAAAA
*
6677976 TTTTCTCTTTTTCTTTTTTT
1 TTTTCTCTTTTTCATTTTTT
6677996 TTTTCTCTTTTTTCATTTTTT
1 TTTTCTC-TTTTTCATTTTTT
6678017 TT
1 TT
6678019 AGGCTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTCTCTTTTTCATTTTTT
Found at i:6680443 original size:62 final size:63
Alignment explanation
Indices: 6680315--6680443 Score: 161
Period size: 62 Copynumber: 2.1 Consensus size: 63
6680305 GAACAAGAGG
* * ** * * *
6680315 TTGGGGAATGAGAGGCTAAAGATTTTGGTTCAGATATGGACTTCTCGAAGATTGCATACAGTT
1 TTGGGGAATGAGAGGCTAAAGATTTTGCTTCAAATACAGACTTCTCAAAGATTGCATAAAGCT
* * *
6680378 TTGGGGAATGA-AGGCTAAAGATTTTTCTTCAAATACAGACTTCTTAAAGATTGTATAAAGCT
1 TTGGGGAATGAGAGGCTAAAGATTTTGCTTCAAATACAGACTTCTCAAAGATTGCATAAAGCT
6680440 TTGG
1 TTGG
6680444 AGCCCGATTG
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
62 45 0.80
63 11 0.20
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (63 bp):
TTGGGGAATGAGAGGCTAAAGATTTTGCTTCAAATACAGACTTCTCAAAGATTGCATAAAGCT
Found at i:6683301 original size:13 final size:13
Alignment explanation
Indices: 6683283--6683377 Score: 59
Period size: 13 Copynumber: 6.9 Consensus size: 13
6683273 TTACCTAGGG
6683283 TTTAGGGTTTCAT
1 TTTAGGGTTTCAT
6683296 TTTAGGGTTTCCAATT
1 TTTAGGGTTT-C-A-T
6683312 TTACCTAGGGTTT-AGT
1 TT---TAGGGTTTCA-T
* **
6683328 TTTAGGATTTTGT
1 TTTAGGGTTTCAT
*
6683341 ATTAGGGTTTCA-
1 TTTAGGGTTTCAT
* *
6683353 TTTAGGATTTTAT
1 TTTAGGGTTTCAT
6683366 TTTAGGGTTTCA
1 TTTAGGGTTTCA
6683378 AAATTTTACA
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
12 9 0.15
13 36 0.58
14 1 0.02
15 1 0.02
16 7 0.11
19 8 0.13
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (13 bp):
TTTAGGGTTTCAT
Found at i:6683356 original size:25 final size:25
Alignment explanation
Indices: 6683328--6683377 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
6683318 AGGGTTTAGT
*
6683328 TTTAGGATTTTGTATTAGGGTTTCA
1 TTTAGGATTTTATATTAGGGTTTCA
*
6683353 TTTAGGATTTTATTTTAGGGTTTCA
1 TTTAGGATTTTATATTAGGGTTTCA
6683378 AAATTTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.04, G:0.22, T:0.54
Consensus pattern (25 bp):
TTTAGGATTTTATATTAGGGTTTCA
Found at i:6683524 original size:17 final size:18
Alignment explanation
Indices: 6683488--6683527 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
6683478 AAATTTTATT
*
6683488 ATATTATTTATTAATTTA
1 ATATTAATTATTAATTTA
*
6683506 ATATTAATT-TTATTTTA
1 ATATTAATTATTAATTTA
6683523 ATATT
1 ATATT
6683528 TAATAATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATATTAATTATTAATTTA
Found at i:6683700 original size:3 final size:3
Alignment explanation
Indices: 6683692--6683717 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6683682 TGAAGGTGCC
6683692 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
6683718 GACCAAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:6699648 original size:6 final size:7
Alignment explanation
Indices: 6699631--6699656 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
6699621 AAAATTTGAA
6699631 AAAAAAG
1 AAAAAAG
6699638 AAAAAAG
1 AAAAAAG
6699645 AAAAAAG
1 AAAAAAG
6699652 AAAAA
1 AAAAA
6699657 CATTGCCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:6700077 original size:23 final size:23
Alignment explanation
Indices: 6700047--6700092 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
6700037 CTTATCTGAA
6700047 CACATATGAGCTTTTAACTAAAC
1 CACATATGAGCTTTTAACTAAAC
6700070 CACATATGAGCTTTTAACTAAAC
1 CACATATGAGCTTTTAACTAAAC
6700093 ATGGAACAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (23 bp):
CACATATGAGCTTTTAACTAAAC
Found at i:6707190 original size:146 final size:145
Alignment explanation
Indices: 6706913--6707255 Score: 357
Period size: 146 Copynumber: 2.4 Consensus size: 145
6706903 CTCAGCTAGG
* * * * * *
6706913 CAAAAAGAGCTTAGATCTACAAAATGCCTTCATAAAGGCCCAATTCGACAAATAGCTTAGCCAAA
1 CAAAAA-AGCTCAAATCTACAAAATGCCTTTATAAAGGCCCAATTCGACAAACAACTCAGCCAAA
* *
6706978 ATATTTCGAATCTACAAAATGCCTTCATAAAAGTTCAATTTGACAAAACAACTTAGCCTAAAAGC
65 AGATTTCGAATCTACAAAATGCCTTCATAAAAGTTCAATTTAACAAAACAACTTAGCCTAAAAGC
6707043 TTAGA-TTCAACTCAGC
130 TTAGACTT-AACTCAGC
* * * * *
6707059 CAAAAAAGCTCATATGTACAAAATGCCTTTATAAAGGCCTAATTTGACAAACAACTCGGCCAAAA
1 CAAAAAAGCTCAAATCTACAAAATGCCTTTATAAAGGCCCAATTCGACAAACAACTCAGCCAAAA
* * * * * * * **
6707124 GATTTTTGGATCTACAAAATGCCTTTATAAAAG-TCTAATTTAACAAAATAGCTTGGTCTAGTAG
66 GA-TTTCGAATCTACAAAATGCCTTCATAAAAGTTC-AATTTAACAAAACAACTTAGCCTAAAAG
* * *
6707188 CTTAGACTTAGCTCTGT
129 CTTAGACTTAACTCAGC
* * * * * *
6707205 CAAAAGAGTTTAAATCTATAAAATGCCTTTATAAAGGCTCAATTCAACAAA
1 CAAAAAAGCTCAAATCTACAAAATGCCTTTATAAAGGCCCAATTCGACAAA
6707256 ATAGCTCAGC
Statistics
Matches: 160, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
145 52 0.32
146 106 0.66
147 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (145 bp):
CAAAAAAGCTCAAATCTACAAAATGCCTTTATAAAGGCCCAATTCGACAAACAACTCAGCCAAAA
GATTTCGAATCTACAAAATGCCTTCATAAAAGTTCAATTTAACAAAACAACTTAGCCTAAAAGCT
TAGACTTAACTCAGC
Found at i:6707528 original size:27 final size:28
Alignment explanation
Indices: 6707477--6707532 Score: 89
Period size: 27 Copynumber: 2.0 Consensus size: 28
6707467 AAAAAAAAGC
6707477 TCACCTCAGTCAAGAAAGCTCATCTCGA
1 TCACCTCAGTCAAGAAAGCTCATCTCGA
6707505 TCACCTC-GATCAA-AAAGCTCATCTCGA
1 TCACCTCAG-TCAAGAAAGCTCATCTCGA
6707532 T
1 T
6707533 AAATTATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 16 0.59
28 11 0.41
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.23
Consensus pattern (28 bp):
TCACCTCAGTCAAGAAAGCTCATCTCGA
Found at i:6709002 original size:31 final size:31
Alignment explanation
Indices: 6708914--6709034 Score: 118
Period size: 31 Copynumber: 3.9 Consensus size: 31
6708904 TGCAAGAGTT
* * **
6708914 TAGATTCACCTTGGTGAAAATCACCTCAGCA
1 TAGATTCACCTTAGTGTAAATCACCTTGGCA
* * **
6708945 TAAATTCA-CTTTGATAAAAATCACCTTGGCA
1 TAGATTCACCTTAG-TGTAAATCACCTTGGCA
* * *
6708976 TATATTCACCTTAGTGTAAATTACCTTAGCA
1 TAGATTCACCTTAGTGTAAATCACCTTGGCA
*
6709007 TAGATTCATCTTAGTGTAAATCACCTTG
1 TAGATTCACCTTAGTGTAAATCACCTTG
6709035 ATATAGAATT
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
30 4 0.05
31 65 0.89
32 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (31 bp):
TAGATTCACCTTAGTGTAAATCACCTTGGCA
Found at i:6709028 original size:62 final size:62
Alignment explanation
Indices: 6708917--6709034 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 62
6708907 AAGAGTTTAG
* *
6708917 ATTCACCTTGGTGAAAATCACCTCAGCATAAATTCACTTTGATAAAAATCACCTTGGCATAT
1 ATTCACCTTAGTGAAAATCACCTCAGCATAAATTCACTTAGATAAAAATCACCTTGGCATAT
* * * * **
6708979 ATTCACCTTAGTGTAAATTACCTTAGCATAGATTCATCTTAG-TGTAAATCACCTTG
1 ATTCACCTTAGTGAAAATCACCTCAGCATAAATTCA-CTTAGATAAAAATCACCTTG
6709035 ATATAGAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
62 43 0.91
63 4 0.09
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (62 bp):
ATTCACCTTAGTGAAAATCACCTCAGCATAAATTCACTTAGATAAAAATCACCTTGGCATAT
Found at i:6711241 original size:163 final size:163
Alignment explanation
Indices: 6710962--6711278 Score: 535
Period size: 163 Copynumber: 1.9 Consensus size: 163
6710952 CACTGTTAAT
* * *
6710962 GTAGTTAAGTGGTTTACGTGGCACGAATACTTAATAAAATCATGTCATGTGTCATAAATATTCAA
1 GTAGCTAAGTGGTTTACGTGGCACGAATACTTAACAAAATCATGTCACGTGTCATAAATATTCAA
* *
6711027 TTATTGTGACATCAGTTATTGTTACTGTAAACACCATATTTAGCATGGGATCATTCAAACTAAAT
66 TTATTGTAACATCAGTTATTGTTACTGTAAACACCACATTTAGCATGGGATCATTCAAACTAAAT
6711092 TTTTATTTTGGGTTGATGGGTTTGTCAAGTTTA
131 TTTTATTTTGGGTTGATGGGTTTGTCAAGTTTA
*
6711125 GTAGCTAAGTGGTTTACGTGGTACGAATACTTAACAAAATCATGTCACGTGTCATAAATATTCAA
1 GTAGCTAAGTGGTTTACGTGGCACGAATACTTAACAAAATCATGTCACGTGTCATAAATATTCAA
** * **
6711190 TTATTGTAATGTCAGTTATTGTTATTGTAAACACCACATTTAGTTTGGGATCATTCAAACTAAAT
66 TTATTGTAACATCAGTTATTGTTACTGTAAACACCACATTTAGCATGGGATCATTCAAACTAAAT
6711255 TTTTATTTTGGGTTGATGGGTTTG
131 TTTTATTTTGGGTTGATGGGTTTG
6711279 ACAATTATTA
Statistics
Matches: 143, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
163 143 1.00
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (163 bp):
GTAGCTAAGTGGTTTACGTGGCACGAATACTTAACAAAATCATGTCACGTGTCATAAATATTCAA
TTATTGTAACATCAGTTATTGTTACTGTAAACACCACATTTAGCATGGGATCATTCAAACTAAAT
TTTTATTTTGGGTTGATGGGTTTGTCAAGTTTA
Found at i:6711629 original size:20 final size:19
Alignment explanation
Indices: 6711578--6711632 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
6711568 TATGTAAACG
* *
6711578 AAAAGAAAAATAATTAGAAA
1 AAAACAAAAATGA-TAGAAA
*
6711598 AAAATAAAAATGATAGAAA
1 AAAACAAAAATGATAGAAA
6711617 AATAACAAAAATGATA
1 AA-AACAAAAATGATA
6711633 AAGGAATCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 8 0.26
20 23 0.74
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (19 bp):
AAAACAAAAATGATAGAAA
Found at i:6712356 original size:4 final size:4
Alignment explanation
Indices: 6712349--6712395 Score: 53
Period size: 4 Copynumber: 11.8 Consensus size: 4
6712339 AATTTCACTA
*
6712349 TATT TATT GATT T-TT T-TGT TATCT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TAT-T TAT-T TATT TATT TATT TATT TATT TAT
6712396 CTATGATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
3 4 0.11
4 29 0.76
5 5 0.13
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:6716721 original size:338 final size:338
Alignment explanation
Indices: 6715805--6717147 Score: 1960
Period size: 337 Copynumber: 4.0 Consensus size: 338
6715795 GTTAAAGAAG
* * * *
6715805 AAATTATGAGAGAGTTTGAAGCTGCAAAGAAAAAAATTCAAAGCCTCAATGAGGAAAGAGATTAA
1 AAATTAAGAGAGAGTTTGAAGCTACAAAGAACAAAATTCAAAGCCTCAGTGAGGAAAGAGATTAA
* ** ** *
6715870 TAAAAAGCCCTATTCACTGATTTAGACAAAATGCATTCATCAACCATGTACGAGCTTGCTTGGCT
66 TAGAAAGCCCTATTCACTGATTTAGACAAAACACATTCATCAACCATACATGAGCTTGCTTGGCT
* * *
6715935 CTTAAAAGAAAATGATTTATTACAAGCAAAGGTAGATGAGGGACAAAAGGCCATTACTAGAGTGC
131 CTTAAAAGAAAATGAGTTATTGCAAGCAAAGGTAGAGGAGGGACAAAAGGCCATTACTAGAGTGC
* * *
6716000 AAAAACATAATCAGATACTACAAAAGATGGTTGACCAATGTATAGCACAAGCAGCCATTTTGAAT
196 AAAAACATAATCAGATACTACAAAAGATGGTTGACCAATATACAGCACAAGTAGCCATTTTGAAT
* * * * * *
6716065 AATGAATGCCTAATGTATGCTGATAAAAATGAATAATGGAAGAATTTATACAT-GAAAAAAAAGA
261 AATGAATGCCAAATGTATGCTGACAAAAATGAATAATGGAAAAATTTGTACATGGAGAAACAA-A
6716129 AACATTTAAGGCAA
325 AACATTTAAGGCAA
* * *
6716143 AAATTAAAAGAGAGTTTGAAGCTACAAAGAACAAAATTCAAAGCCTCAGTGAGGAAAGAGAATCA
1 AAATTAAGAGAGAGTTTGAAGCTACAAAGAACAAAATTCAAAGCCTCAGTGAGGAAAGAGATTAA
* *
6716208 T-GAAAGCCCTATTCACTGGTTTAGACAAAACACATTCAAT-AACCTTACATGAGCTTGCTTGGC
66 TAGAAAGCCCTATTCACTGATTTAGACAAAACACATTC-ATCAACCATACATGAGCTTGCTTGGC
**
6716271 TCTTAAAAGAAAATGAGTTATTGCAAGCAAAGGTAGATAAGGGACAAAAGGCCATTACTAGAGTG
130 TCTTAAAAGAAAATGAGTTATTGCAAGCAAAGGTAGAGGAGGGACAAAAGGCCATTACTAGAGTG
* *
6716336 CAAAAACATAATTAGATACTACAAAAGATGGTTGACCAATGTACAGCACAAGTAGCCATTTTGAA
195 CAAAAACATAATCAGATACTACAAAAGATGGTTGACCAATATACAGCACAAGTAGCCATTTTGAA
* *
6716401 TAATGAATGCCAAATGTATGCTGATAAAAATGAATAATGGAAAAATTTGTACATGGAGAAATAAA
260 TAATGAATGCCAAATGTATGCTGACAAAAATGAATAATGGAAAAATTTGTACATGGAGAAACAAA
6716466 AACATTT-AGGACAA
325 AACATTTAAGG-CAA
* * * *
6716480 AAATTAGGAGAGAGTTTGAAGCTGCAAAGAACAAATTTCAAAGCCTC-GATGAGGAAAAAGATTA
1 AAATTAAGAGAGAGTTTGAAGCTACAAAGAACAAAATTCAAAGCCTCAG-TGAGGAAAGAGATTA
* * *
6716544 ATTGAAAGCCTTATTCACTGATTTAGACAAAATACATTCATCAACCA-ATCATGAGCTTGCTTGG
65 ATAGAAAGCCCTATTCACTGATTTAGACAAAACACATTCATCAACCATA-CATGAGCTTGCTTGG
* * *
6716608 CTCTTAAAAGAAAATGAGTTATTGTAAGCAAAGGTAGAGGAGGGACAAAAAGCCATTACTATAGT
129 CTCTTAAAAGAAAATGAGTTATTGCAAGCAAAGGTAGAGGAGGGACAAAAGGCCATTACTAGAGT
* *
6716673 GCAAAAACATAATCAAATACTACAAAAGATTGTTGACCAATATACAGCACAAGTAGCCATTTTGA
194 GCAAAAACATAATCAGATACTACAAAAGATGGTTGACCAATATACAGCACAAGTAGCCATTTTGA
6716738 ATAATGAATGCCAAATGTATGCTGACAAAAATGAATAAT-GAAAGAATTTGTACATGGAGAAACA
259 ATAATGAATGCCAAATGTATGCTGACAAAAATGAATAATGGAAA-AATTTGTACATGGAGAAACA
*
6716802 GAAACATTTAAGGCAA
323 AAAACATTTAAGGCAA
*
6716818 AAATTAAGAGAGAGTTTGAAGCTACAAAGAACAAAATTC-GAGCCTCAGTGAGGAAAGAGATTAA
1 AAATTAAGAGAGAGTTTGAAGCTACAAAGAACAAAATTCAAAGCCTCAGTGAGGAAAGAGATTAA
* * *** *
6716882 TAGAAAGCCCTATTCACTAATTTAGACAAAACACATTCATCAGCCACGTATGAGCTTACTTGGCT
66 TAGAAAGCCCTATTCACTGATTTAGACAAAACACATTCATCAACCATACATGAGCTTGCTTGGCT
* * * *
6716947 -TTAAAA-AAAATGAATTATTGCAAGCAAAAGTAGAGGAGGGACAAAAGGCCATTACCAGAGTGT
131 CTTAAAAGAAAATGAGTTATTGCAAGCAAAGGTAGAGGAGGGACAAAAGGCCATTACTAGAGTGC
* * *
6717010 AGAAACATAATCAGATACTATAAAAGATGGTTGA-C--TATACA-CACAAGTA-CCTATTTTAAA
196 AAAAACATAATCAGATACTACAAAAGATGGTTGACCAATATACAGCACAAGTAGCC-ATTTTGAA
* *
6717070 TAATGAATGCCAAATGTATGCTGACAAAAATGAATAATGGAAGAATTTGTACATGGAGAAACAGA
260 TAATGAATGCCAAATGTATGCTGACAAAAATGAATAATGGAAAAATTTGTACATGGAGAAACAAA
6717135 AACATTTAAGGCA
325 AACATTTAAGGCA
6717148 CCTATTCAAT
Statistics
Matches: 917, Mismatches: 75, Indels: 33
0.89 0.07 0.03
Matches are distributed among these distances:
330 2 0.00
331 88 0.10
332 9 0.01
334 1 0.00
335 80 0.09
336 10 0.01
337 378 0.41
338 346 0.38
339 3 0.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (338 bp):
AAATTAAGAGAGAGTTTGAAGCTACAAAGAACAAAATTCAAAGCCTCAGTGAGGAAAGAGATTAA
TAGAAAGCCCTATTCACTGATTTAGACAAAACACATTCATCAACCATACATGAGCTTGCTTGGCT
CTTAAAAGAAAATGAGTTATTGCAAGCAAAGGTAGAGGAGGGACAAAAGGCCATTACTAGAGTGC
AAAAACATAATCAGATACTACAAAAGATGGTTGACCAATATACAGCACAAGTAGCCATTTTGAAT
AATGAATGCCAAATGTATGCTGACAAAAATGAATAATGGAAAAATTTGTACATGGAGAAACAAAA
ACATTTAAGGCAA
Found at i:6724110 original size:30 final size:30
Alignment explanation
Indices: 6724034--6724148 Score: 87
Period size: 30 Copynumber: 3.9 Consensus size: 30
6724024 AAATTACTTT
* *
6724034 ATGTTAAAAGTTTGTTTAGATATAAATTAAA
1 ATGTTAAAAGTTTATTTAGATACAAA-TAAA
* *
6724065 A-GTTAAAAGTGTATTTGGATACAAATAAA
1 ATGTTAAAAGTTTATTTAGATACAAATAAA
* *
6724094 ATGTTAAGAA-TTTATTTTGATGC-AATAAAA
1 ATGTTAA-AAGTTTATTTAGATACAAAT-AAA
** *
6724124 AT-TTAAAAACTTATTTAAATA-AAAT
1 ATGTTAAAAGTTTATTTAGATACAAAT
6724149 GATAAAATTC
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
28 2 0.03
29 23 0.34
30 40 0.59
31 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.11, T:0.38
Consensus pattern (30 bp):
ATGTTAAAAGTTTATTTAGATACAAATAAA
Found at i:6730073 original size:19 final size:19
Alignment explanation
Indices: 6730049--6730111 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
6730039 TAATCGTACA
6730049 TAAACCTTAATCCCAAACC
1 TAAACCTTAATCCCAAACC
* *
6730068 TAAACCCTTTA-CCAAAACCC
1 TAAA-CCTTAATCCCAAA-CC
*
6730088 TAAACC-TAGATCCCAAACT
1 TAAACCTTA-ATCCCAAACC
6730107 TAAAC
1 TAAAC
6730112 TCTAAACCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
18 1 0.03
19 18 0.51
20 16 0.46
ACGTcount: A:0.43, C:0.35, G:0.02, T:0.21
Consensus pattern (19 bp):
TAAACCTTAATCCCAAACC
Found at i:6730165 original size:24 final size:23
Alignment explanation
Indices: 6730103--6730266 Score: 62
Period size: 24 Copynumber: 6.6 Consensus size: 23
6730093 CTAGATCCCA
* * *
6730103 AACTTAAACTCTAAACCTAACCTT
1 AACTCAAAC-CTAAACCAAACCCT
6730127 AACTCAAACCTTAAACCAAACCCT
1 AACTCAAACC-TAAACCAAACCCT
*
6730151 AGAC-CAAATCCTAAAAGCCCTAAGCCCT
1 A-ACTCAAA-CCT-AAA--CC-AAACCCT
* *** *
6730179 AATCTTAAACCCTAAATTTAACCGT
1 AA-CTCAAA-CCTAAACCAAACCCT
*
6730204 AAATCAAATCCTAAACCAAACCCT
1 AACTCAAA-CCTAAACCAAACCCT
* * *
6730228 AACCTTAAAACTAAACCTTAACCCT
1 AA-CTCAAACCTAAACC-AAACCCT
6730253 AGAC-CAAATCCTAA
1 A-ACTCAAA-CCTAA
6730267 TTCCCAAACC
Statistics
Matches: 103, Mismatches: 24, Indels: 25
0.68 0.16 0.16
Matches are distributed among these distances:
23 1 0.01
24 52 0.50
25 29 0.28
26 1 0.01
27 3 0.03
28 11 0.11
29 6 0.06
ACGTcount: A:0.44, C:0.32, G:0.03, T:0.21
Consensus pattern (23 bp):
AACTCAAACCTAAACCAAACCCT
Found at i:6732584 original size:302 final size:303
Alignment explanation
Indices: 6732262--6732839 Score: 865
Period size: 303 Copynumber: 1.9 Consensus size: 303
6732252 ATTATGTTTT
* * *
6732262 TTTTTTTAGAAAATGTTTTCTTGAATTCTTATGTCTTAGTATGAAAAAAAAA-AAAATCTTGATT
1 TTTTTTTAGAAAAGGTTTTCTTGAATTCTTATGTCTTACTAGGAAAAAAAAAGAAAATCTTGATT
* *
6732326 TTGAATGTTCTTTTGTCCCTTTCATTCCATTTGATCCCTTTTGCATTCACTTTCATTATGCTTTG
66 TTGAATGTTATTTTATCCCTTTCATTCCATTTGATCCCTTTTGCATTCACTTTCATTATGCTTTG
**
6732391 TATTTGAAAATAATAAGGTTATACATA-CAATTTATTTCATACACATTTGAATGGTTGTGTTTAT
131 TATTTGAAAATAATAAGGTTATACATATC-ATTTATTTCATACACATTTGAATGGTTGTGTCAAT
* *
6732455 TTCATTAAATTTATATAGTACATGCATTGCATTTCATGCAAATAACT-TATCAGTACATTTCATG
195 TTCATTAAATTTACATAATACATGCATTGCATTTCATGCAAATAA-TATATCAGTACATTTCATG
6732519 TAAACATGTTTCATCATTATGTTTTGTATTTGGTCATTTTATGTG
259 TAAACATGTTTCATCATTATGTTTTGTATTTGGTCATTTTATGTG
* *
6732564 TTTTTTTAGGAAAGGTTTTCTTGAATTCTTATGTCTTTCTAGGAAAAAAAAAGAAAATCTTGATT
1 TTTTTTTAGAAAAGGTTTTCTTGAATTCTTATGTCTTACTAGGAAAAAAAAAGAAAATCTTGATT
*** * ** * * *
6732629 TTGAATGTTATTTTATCCCTTTCATTTTGTTTGATCCTTTTTGTGTTCATTTTCTTTATGTTTTG
66 TTGAATGTTATTTTATCCCTTTCATTCCATTTGATCCCTTTTGCATTCACTTTCATTATGCTTTG
* * *
6732694 TATTTGAAAATAATAAGGTTGTACATATCCTTTATTTCATACATATTTGAATGGTTGTGTCAATT
131 TATTTGAAAATAATAAGGTTATACATATCATTTATTTCATACACATTTGAATGGTTGTGTCAATT
* * * * *
6732759 TCATTAAATTTGCATAATACATTCATTGCATTTCATGTAAATAATATGTTAGTACATTTCATGTA
196 TCATTAAATTTACATAATACATGCATTGCATTTCATGCAAATAATATATCAGTACATTTCATGTA
6732824 AACATGTTTCATCATT
261 AACATGTTTCATCATT
6732840 TATATACTTA
Statistics
Matches: 245, Mismatches: 28, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
302 48 0.20
303 196 0.80
304 1 0.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (303 bp):
TTTTTTTAGAAAAGGTTTTCTTGAATTCTTATGTCTTACTAGGAAAAAAAAAGAAAATCTTGATT
TTGAATGTTATTTTATCCCTTTCATTCCATTTGATCCCTTTTGCATTCACTTTCATTATGCTTTG
TATTTGAAAATAATAAGGTTATACATATCATTTATTTCATACACATTTGAATGGTTGTGTCAATT
TCATTAAATTTACATAATACATGCATTGCATTTCATGCAAATAATATATCAGTACATTTCATGTA
AACATGTTTCATCATTATGTTTTGTATTTGGTCATTTTATGTG
Found at i:6735153 original size:55 final size:54
Alignment explanation
Indices: 6735071--6735183 Score: 158
Period size: 55 Copynumber: 2.1 Consensus size: 54
6735061 TATGGAAAGA
* *
6735071 CAAA-TATATCAAAAAAAACTTAGATGCAAATTATATAAAA-AAAACTTCATTT
1 CAAATTATATCAAAAAAAACTTAGATGCAAATTATATAAAATAAAACTCCATTC
* *
6735123 CAAATTATATCAATAAATCAACTTATATGCAAATTATATAAAATAAAACTCCATTC
1 CAAATTATATCAA-AAA-AAACTTAGATGCAAATTATATAAAATAAAACTCCATTC
6735179 CAAAT
1 CAAAT
6735184 ATGGTATCTT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
52 4 0.08
53 8 0.15
54 3 0.06
55 23 0.43
56 15 0.28
ACGTcount: A:0.53, C:0.14, G:0.03, T:0.30
Consensus pattern (54 bp):
CAAATTATATCAAAAAAAACTTAGATGCAAATTATATAAAATAAAACTCCATTC
Found at i:6735155 original size:29 final size:27
Alignment explanation
Indices: 6735071--6735172 Score: 113
Period size: 26 Copynumber: 3.8 Consensus size: 27
6735061 TATGGAAAGA
*
6735071 CAAA-TATATCAAAAAAAACTTAGATG
1 CAAATTATATCAAAAAAAACTTATATG
*
6735097 CAAATTATAT-AAAAAAAACTTCAT-TT
1 CAAATTATATCAAAAAAAACTT-ATATG
*
6735123 CAAATTATATCAATAAATCAACTTATATG
1 CAAATTATATCAA-AAA-AAACTTATATG
6735152 CAAATTATAT-AAAATAAAACT
1 CAAATTATATCAAAA-AAAACT
6735173 CCATTCCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
26 26 0.41
27 14 0.22
28 8 0.12
29 16 0.25
ACGTcount: A:0.55, C:0.12, G:0.03, T:0.30
Consensus pattern (27 bp):
CAAATTATATCAAAAAAAACTTATATG
Found at i:6738635 original size:49 final size:51
Alignment explanation
Indices: 6738589--6738686 Score: 123
Period size: 54 Copynumber: 1.9 Consensus size: 51
6738579 AAGAAGAGTG
*
6738589 AAAAAAA-GAAAGAAAAA-AT-G-AAACAAAAAAAACAATGAAGAAAAGAGGA
1 AAAAAAAGGAAAGAAAAACATGGCAAAAAAAAAAAACAA--AAGAAAAGAGGA
*
6738638 AAAAAAAGGCAAGAAAAATCATGGCAAAAAAAAAAAACAAAAGAAAAGA
1 AAAAAAAGGAAAGAAAAA-CATGGCAAAAAAAAAAAACAAAAGAAAAGA
6738687 AAAGGAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
49 7 0.17
50 9 0.21
52 11 0.26
53 1 0.02
54 14 0.33
ACGTcount: A:0.74, C:0.06, G:0.15, T:0.04
Consensus pattern (51 bp):
AAAAAAAGGAAAGAAAAACATGGCAAAAAAAAAAAACAAAAGAAAAGAGGA
Found at i:6742156 original size:200 final size:202
Alignment explanation
Indices: 6741693--6742178 Score: 545
Period size: 200 Copynumber: 2.4 Consensus size: 202
6741683 ATGTTATTTT
* * * *
6741693 TGTCACTAATACTGTAACAATTTACCTTTCATCATTAATATATCAAATTTAATCATTTATTTTGT
1 TGTCACTAATACTGTGACGATTTACATTTCATCATTAATATATCAAATTTTATCATTTATTTTGT
* * * * *
6741758 GACGATTAT-AGCTTTCAATGACATTTTTTCATAAATAACTAATGAAAACTAACGTCACAAAAAA
66 AATGATTATAACCTTT-AATAACATTTTTTCATAAATAACTAACGAAAACTAACGTCACAAAAAA
* * * * * ** *
6741822 ATAAAGCATGATGTGGCATTTGATTTTATTGTCACGTTTGACGTTATTTTACAATCATTTGTGAT
130 ATAAAGCATAAAGTGACATTTGATTTTATTGTCAC-TTTGACATTATCTTACAATCATTCATGAC
6741887 GATAATTAG
194 GATAATTAG
* * * ** *
6741896 -GTTACCAATACTGTGATGAATTT-TTTTTCATCATTAATATATCAAATTTTATCATTTATTTTA
1 TGTCACTAATACTGTGACG-ATTTACATTTCATCATTAATATATCAAATTTTATCATTTATTTTG
* * * * * **
6741959 TAATGATTATAACCTTTAATAATATTCTTCTTTATAAGTAGCTGACGAAAACTAACGTTTC-AAA
65 TAATGATTATAACCTTTAATAACATT-TT-TTCATAAATAACTAACGAAAACTAACGTCACAAAA
* *
6742023 AAA-AAAGCATAAAGTGACATTTTATTTTATTGTCA-TTTGACATTATCTTATAATCATTCATGA
128 AAATAAAGCATAAAGTGACATTTGATTTTATTGTCACTTTGACATTATCTTACAATCATTCATGA
6742086 CGATAATT-G
193 CGATAATTAG
* * * *
6742095 TGTCACTAATATTGTGACGATTTACATTTCATCACTAATGTATCAGATTTTATCATTTATTTTGT
1 TGTCACTAATACTGTGACGATTTACATTTCATCATTAATATATCAAATTTTATCATTTATTTTGT
*
6742160 AATGATTATAGCCTTTAAT
66 AATGATTATAACCTTTAAT
6742179 GACAATGTTA
Statistics
Matches: 235, Mismatches: 42, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
199 5 0.02
200 97 0.41
202 92 0.39
203 17 0.07
204 24 0.10
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (202 bp):
TGTCACTAATACTGTGACGATTTACATTTCATCATTAATATATCAAATTTTATCATTTATTTTGT
AATGATTATAACCTTTAATAACATTTTTTCATAAATAACTAACGAAAACTAACGTCACAAAAAAA
TAAAGCATAAAGTGACATTTGATTTTATTGTCACTTTGACATTATCTTACAATCATTCATGACGA
TAATTAG
Found at i:6742341 original size:171 final size:171
Alignment explanation
Indices: 6742026--6742349 Score: 436
Period size: 171 Copynumber: 1.9 Consensus size: 171
6742016 TTTCAAAAAA
* * * * *
6742026 AAAGCATAAAGTGACATTTTATTTTATTGTCATTTGACATTATCTTATAATCATTCATGACGATA
1 AAAGCATAAAGTGACATTTGATTTTATTGTCAATAGACATTATCTTACAATCATTCATGACAATA
* * *
6742091 ATTGTGTCACTAATATTGTGACGATTTACATTTCATCACTAATGTATCAGATTTTATCATTTATT
66 ATTGTGTCACCAATATTGTGACGATTTACATTTCATCACTAATATATAAGATTTTATCATTTATT
**
6742156 TTGTAATGATTATAGCCTTTAATGACAATGTTACAAAATTT
131 TTGTAACAATTATAGCCTTTAATGACAATGTTACAAAATTT
* * **
6742197 AAAGCATAAGGTGATATTTGATTTTATTGTCACGATAGACATTATCTTACAATCATTGGTGACAA
1 AAAGCATAAAGTGACATTTGATTTTATTGTCA--ATAGACATTATCTTACAATCATTCATGACAA
* * * *
6742262 TAATTG-GTCACCAATATTGTGACGATTTACTTTTCGTCATTAATATATAAGATTTTCTCATTT-
64 TAATTGTGTCACCAATATTGTGACGATTTACATTTCATCACTAATATATAAGATTTTATCATTTA
* *
6742325 TTTTGTGACAATTATAGCTTTTAAT
129 TTTTGTAACAATTATAGCCTTTAAT
6742350 AACTTTTTTT
Statistics
Matches: 131, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
171 50 0.38
172 50 0.38
173 31 0.24
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (171 bp):
AAAGCATAAAGTGACATTTGATTTTATTGTCAATAGACATTATCTTACAATCATTCATGACAATA
ATTGTGTCACCAATATTGTGACGATTTACATTTCATCACTAATATATAAGATTTTATCATTTATT
TTGTAACAATTATAGCCTTTAATGACAATGTTACAAAATTT
Found at i:6746826 original size:10 final size:11
Alignment explanation
Indices: 6746800--6746825 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
6746790 AGATCAAGTG
6746800 TTTTTATAATA
1 TTTTTATAATA
6746811 TTTTTATAATA
1 TTTTTATAATA
6746822 TTTT
1 TTTT
6746826 AGAATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTTATAATA
Found at i:6751448 original size:14 final size:14
Alignment explanation
Indices: 6751417--6751454 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
6751407 AAAATTATTA
6751417 TTATTTATTTACCT
1 TTATTTATTTACCT
*
6751431 TTATCTATTTATCC-
1 TTATTTATTTA-CCT
6751445 TTATTTATTT
1 TTATTTATTT
6751455 TTCTGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 19 0.90
15 2 0.10
ACGTcount: A:0.21, C:0.13, G:0.00, T:0.66
Consensus pattern (14 bp):
TTATTTATTTACCT
Found at i:6753830 original size:13 final size:14
Alignment explanation
Indices: 6753742--6753829 Score: 51
Period size: 15 Copynumber: 6.3 Consensus size: 14
6753732 ATTTTTACCT
*
6753742 TTTTATTTTTATTA
1 TTTTATTGTTATTA
**
6753756 TTTTAATAATTATTA
1 TTTT-ATTGTTATTA
*
6753771 TTTT-TTGGT-TT-
1 TTTTATTGTTATTA
*
6753782 TTTTAGTTTTTTAATTA
1 TTTTA--TTGTT-ATTA
6753799 TTATTATTGTTATTA
1 TT-TTATTGTTATTA
6753814 TTTTATT-TTATT-
1 TTTTATTGTTATTA
6753826 TTTT
1 TTTT
6753830 TCTTAATGGC
Statistics
Matches: 58, Mismatches: 8, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
11 4 0.07
12 6 0.10
13 7 0.12
14 12 0.21
15 18 0.31
16 6 0.10
17 2 0.03
18 3 0.05
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.74
Consensus pattern (14 bp):
TTTTATTGTTATTA
Found at i:6754194 original size:18 final size:17
Alignment explanation
Indices: 6754163--6754228 Score: 71
Period size: 17 Copynumber: 3.8 Consensus size: 17
6754153 AACTTTTTTG
* *
6754163 TTTTTT-TTTGTTTGAT
1 TTTTTTATTTTTTTGGT
6754179 TTTTTTATCTTTTTTGGGT
1 TTTTTTAT-TTTTTT-GGT
6754198 TTTTTTATTTTTTTGGT
1 TTTTTTATTTTTTTGGT
**
6754215 TTTTCAATTTTTTT
1 TTTTTTATTTTTTT
6754229 ATGTTTTTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
16 6 0.14
17 16 0.37
18 11 0.26
19 10 0.23
ACGTcount: A:0.08, C:0.03, G:0.11, T:0.79
Consensus pattern (17 bp):
TTTTTTATTTTTTTGGT
Found at i:6754217 original size:25 final size:25
Alignment explanation
Indices: 6754196--6754253 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
6754186 TCTTTTTTGG
*
6754196 GTTTTTTTATTTTTTTGGTTTTTCA
1 GTTTTTTTATGTTTTTGGTTTTTCA
* *
6754221 ATTTTTTTATGTTTTTGGTTTTTTA
1 GTTTTTTTATGTTTTTGGTTTTTCA
6754246 GTTTTTTT
1 GTTTTTTT
6754254 TTAAGACTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.09, C:0.02, G:0.12, T:0.78
Consensus pattern (25 bp):
GTTTTTTTATGTTTTTGGTTTTTCA
Found at i:6754387 original size:44 final size:43
Alignment explanation
Indices: 6754325--6754411 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
6754315 AATGAGATGA
* * *
6754325 TTGAGACAAGCCTCAAGTCAAACGAAGTGACTGAGGTTAAACT
1 TTGAGACAAGCCACAAGTCAAACGAAGTAACTGAGATTAAACT
* * *
6754368 TTGAGACTAAGCCACAAGTCGAATGAAGTAACTTAGATTAAACT
1 TTGAGAC-AAGCCACAAGTCAAACGAAGTAACTGAGATTAAACT
6754412 GCAGGTGGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 7 0.19
44 30 0.81
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (43 bp):
TTGAGACAAGCCACAAGTCAAACGAAGTAACTGAGATTAAACT
Found at i:6754867 original size:167 final size:167
Alignment explanation
Indices: 6754606--6754921 Score: 372
Period size: 167 Copynumber: 1.9 Consensus size: 167
6754596 CTAATCTAGA
* * *
6754606 TTTAAATTTTTATTGGTGTCAGTTAATGTTAAGCTTAAAACCTTCATCAAATGCTAGTTACACTG
1 TTTAAATTTTCATTGGTGTCAGTTAATATTAAGCTTAAAACCATCATCAAATGCTAGTTACACTG
* * *** * *
6754671 GATTTAAATTTTCACTATGTGTTACTAAGTTGGGCTTAAATCTGTCATTAGGTGCCAAC-AATAT
66 GACTTAAATTTTCACTAGGTCCAACTAAGTTGGACTTAAATCTGTCATTAGGTGCCAACTAA-AC
6754735 TGGGTTTAAATCTTTTCATGAGTGCTAGATAAATTGGG
130 TGGGTTTAAATCTTTTCATGAGTGCTAGATAAATTGGG
* * *
6754773 TTTAAATTTTCATTGGTG-CTAGTTGATATTAGGCTTAAAACCATCAT-AAGTG-TCAGTTACAC
1 TTTAAATTTTCATTGGTGTC-AGTTAATATTAAGCTTAAAACCATCATCAAATGCT-AGTTACAC
* * * * * *
6754835 TAGG-CTTAAATTTTTACTAGGTACCAACTAAGTTGGATTTAAATCTTTTATTGGGTGTCAACTA
64 T-GGACTTAAATTTTCACTAGGT-CCAACTAAGTTGGACTTAAATCTGTCATTAGGTGCCAACTA
*
6754899 AGCTGGGTTTAAATCTTTTCATG
127 AACTGGGTTTAAATCTTTTCATG
6754922 TGCCAGGTAA
Statistics
Matches: 124, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
165 1 0.01
166 29 0.23
167 92 0.74
168 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (167 bp):
TTTAAATTTTCATTGGTGTCAGTTAATATTAAGCTTAAAACCATCATCAAATGCTAGTTACACTG
GACTTAAATTTTCACTAGGTCCAACTAAGTTGGACTTAAATCTGTCATTAGGTGCCAACTAAACT
GGGTTTAAATCTTTTCATGAGTGCTAGATAAATTGGG
Found at i:6755034 original size:32 final size:33
Alignment explanation
Indices: 6754997--6755133 Score: 106
Period size: 32 Copynumber: 4.2 Consensus size: 33
6754987 AGCTAAATTG
*
6754997 GGCTTAAATTTTTATT-GGTGCTAGATAATCTA
1 GGCTTAAATTTTCATTAGGTGCTAGATAATCTA
* * * * *
6755029 AGCTTAAATTTTTCCTTGGGTGCCA-ATTTAAT-TG
1 GGCTTAAA-TTTTCATTAGGTGCTAGA--TAATCTA
6755063 GGCTTAAA-TTTCATTAGG-GCTAGATAATCTA
1 GGCTTAAATTTTCATTAGGTGCTAGATAATCTA
* * * *
6755094 GGCTTAAATTTCCATT-GGTGCAAGCTAAACTA
1 GGCTTAAATTTTCATTAGGTGCTAGATAATCTA
*
6755126 GACTTAAA
1 GGCTTAAA
6755134 ACTTGAGTGG
Statistics
Matches: 82, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
30 4 0.05
31 14 0.17
32 39 0.48
33 7 0.09
34 14 0.17
35 4 0.05
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (33 bp):
GGCTTAAATTTTCATTAGGTGCTAGATAATCTA
Found at i:6757007 original size:12 final size:12
Alignment explanation
Indices: 6756990--6757017 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
6756980 TCATCTTTCC
6756990 TTTTTTTTTCTT
1 TTTTTTTTTCTT
6757002 TTTTTTTTTCTT
1 TTTTTTTTTCTT
6757014 TTTT
1 TTTT
6757018 GACATGCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (12 bp):
TTTTTTTTTCTT
Found at i:6759515 original size:17 final size:19
Alignment explanation
Indices: 6759483--6759517 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
6759473 ATATTAACAT
6759483 AAAATAACATTTCACAAAC
1 AAAATAACATTTCACAAAC
6759502 AAAATAA-A-TTCACAAA
1 AAAATAACATTTCACAAA
6759518 GCATTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.63, C:0.17, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAATAACATTTCACAAAC
Found at i:6765323 original size:18 final size:18
Alignment explanation
Indices: 6765281--6765323 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
6765271 CATTTTTGCC
6765281 CTTTTATTATTATTATTTT
1 CTTTT-TTATTATTATTTT
* *
6765300 CATTTTTATTATTTTTTT
1 CTTTTTTATTATTATTTT
*
6765318 GTTTTT
1 CTTTTT
6765324 AGGTTTTTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (18 bp):
CTTTTTTATTATTATTTT
Found at i:6767173 original size:6 final size:6
Alignment explanation
Indices: 6767162--6767187 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6767152 ATCATATATC
6767162 TACATA TACATA TACATA TACATA TA
1 TACATA TACATA TACATA TACATA TA
6767188 TATTTAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
TACATA
Found at i:6773049 original size:4 final size:4
Alignment explanation
Indices: 6773040--6773074 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
6773030 TTTTCTTATG
*
6773040 ATAA ATAA ATAA ATAA ATAC ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
6773075 TGCATATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:6773194 original size:10 final size:11
Alignment explanation
Indices: 6773170--6773204 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
6773160 GTTATAAGAT
6773170 TTTTTTAAATTA
1 TTTTTTAAA-TA
6773182 TTTTTTAAA-A
1 TTTTTTAAATA
6773192 TTTTTTAAATA
1 TTTTTTAAATA
6773203 TT
1 TT
6773205 ATCTTAAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 3 0.14
12 9 0.41
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTTTAAATA
Found at i:6773211 original size:22 final size:22
Alignment explanation
Indices: 6773170--6773211 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
6773160 GTTATAAGAT
*
6773170 TTTTTTAAATTATTTTTTAAAA
1 TTTTTTAAATTATTTCTTAAAA
6773192 TTTTTTAAA-TATTATCTTAA
1 TTTTTTAAATTATT-TCTTAA
6773212 GGGATATGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTTTAAATTATTTCTTAAAA
Found at i:6777835 original size:2 final size:2
Alignment explanation
Indices: 6777830--6777854 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6777820 AAAAACACTA
6777830 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
6777855 AAACCCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6783609 original size:3 final size:3
Alignment explanation
Indices: 6783601--6783634 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
6783591 TTAAACTCAC
6783601 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
6783635 ACACTCGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:6784862 original size:9 final size:9
Alignment explanation
Indices: 6784848--6784886 Score: 51
Period size: 9 Copynumber: 4.0 Consensus size: 9
6784838 TCTGTCTTAG
6784848 ATTTTTTTT
1 ATTTTTTTT
6784857 ATTTTTTTT
1 ATTTTTTTT
6784866 ATTTTTATCTTT
1 A-TTTT-T-TTT
6784878 ATTTTTTTT
1 ATTTTTTTT
6784887 TACTTTTCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 13 0.48
10 5 0.19
11 5 0.19
12 4 0.15
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.85
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:6786468 original size:18 final size:19
Alignment explanation
Indices: 6786445--6786488 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
6786435 AATAGTATTA
6786445 TTTTAAT-AA-TATAACTAT
1 TTTTAATCAATTATAA-TAT
*
6786463 TTTTAATCAATTTTAATAT
1 TTTTAATCAATTATAATAT
6786482 TTTTAAT
1 TTTTAAT
6786489 TTAAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
19 12 0.52
20 4 0.17
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTTAATCAATTATAATAT
Found at i:6786634 original size:22 final size:23
Alignment explanation
Indices: 6786583--6786635 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
6786573 CCCTTTTATA
6786583 ATTT-AATAATAAATATTTTCAAT
1 ATTTAAAT-ATAAATATTTTCAAT
* *
6786606 A-TAAAATATAACTATTTT-AAT
1 ATTTAAATATAAATATTTTCAAT
6786627 ATTTAAATA
1 ATTTAAATA
6786636 AGAAATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 4 0.16
22 17 0.68
23 4 0.16
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTTAAATATAAATATTTTCAAT
Found at i:6786801 original size:25 final size:24
Alignment explanation
Indices: 6786773--6786820 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
6786763 TAAAATACAT
6786773 AATAATATAATAATATAATAATTTC
1 AATAATATAATAATA-AATAATTTC
* * *
6786798 AATATTTTAATAATACATAATTT
1 AATAATATAATAATAAATAATTT
6786821 TGAATATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (24 bp):
AATAATATAATAATAAATAATTTC
Found at i:6786826 original size:25 final size:25
Alignment explanation
Indices: 6786780--6786836 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
6786770 CATAATAATA
6786780 TAATAATATAATAATTTCAATATTT
1 TAATAATATAATAATTTCAATATTT
* *
6786805 TAATAATA-CATAATTTTGAATATTT
1 TAATAATATAATAA-TTTCAATATTT
6786830 TAATAAT
1 TAATAAT
6786837 TATGTTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 4 0.14
25 25 0.86
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (25 bp):
TAATAATATAATAATTTCAATATTT
Found at i:6787216 original size:94 final size:94
Alignment explanation
Indices: 6787112--6787298 Score: 365
Period size: 94 Copynumber: 2.0 Consensus size: 94
6787102 AATTGTTATT
*
6787112 TTATATTTATGACATTTAAGTGTAAAACTATTATTTATATAGTTATGTTAAGAATATTATTTTGA
1 TTATATTTATGACATTTAAGTGTAAAAATATTATTTATATAGTTATGTTAAGAATATTATTTTGA
6787177 TGAAAATACTGATTTTTCAAGAAAAAATA
66 TGAAAATACTGATTTTTCAAGAAAAAATA
6787206 TTATATTTATGACATTTAAGTGTAAAAATATTATTTATATAGTTATGTTAAGAATATTATTTTGA
1 TTATATTTATGACATTTAAGTGTAAAAATATTATTTATATAGTTATGTTAAGAATATTATTTTGA
6787271 TGAAAATACTGATTTTTCAAGAAAAAAT
66 TGAAAATACTGATTTTTCAAGAAAAAAT
6787299 CTAAAAATTA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.44
Consensus pattern (94 bp):
TTATATTTATGACATTTAAGTGTAAAAATATTATTTATATAGTTATGTTAAGAATATTATTTTGA
TGAAAATACTGATTTTTCAAGAAAAAATA
Found at i:6792813 original size:34 final size:34
Alignment explanation
Indices: 6792761--6792829 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 34
6792751 TCTTTTTTTG
*
6792761 TAATTAATTTTTATTTTATATATTTTTTATAATT
1 TAATTAATTTTTATTTTATATATTTTTTACAATT
6792795 TAATTAATTATTTA-TTTATATATTTTTTACAATT
1 TAATTAATT-TTTATTTTATATATTTTTTACAATT
6792829 T
1 T
6792830 TTCAATTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
34 29 0.88
35 4 0.12
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (34 bp):
TAATTAATTTTTATTTTATATATTTTTTACAATT
Found at i:6792818 original size:12 final size:12
Alignment explanation
Indices: 6792770--6792823 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 12
6792760 GTAATTAATT
6792770 TTTATTTTATATA
1 TTTA-TTTATATA
6792783 TTT-TTTATA-A
1 TTTATTTATATA
*
6792793 TTTAATTA-ATTA
1 TTTATTTATA-TA
6792805 TTTATTTATATA
1 TTTATTTATATA
6792817 TTT-TTTA
1 TTTATTTA
6792824 CAATTTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
10 5 0.14
11 13 0.37
12 13 0.37
13 4 0.11
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATTTATATA
Found at i:6793597 original size:22 final size:22
Alignment explanation
Indices: 6793550--6793603 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
6793540 TTTTGCCCGT
* *
6793550 AGGTCTTAAAAATTGTACCTGA
1 AGGTATTAAAAATTATACCTGA
* *
6793572 AGGTTTTAAAAATTATACTTTG-
1 AGGTATTAAAAATTATAC-CTGA
6793594 AGGTATTAAA
1 AGGTATTAAA
6793604 GGTTTCGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 25 0.93
23 2 0.07
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (22 bp):
AGGTATTAAAAATTATACCTGA
Found at i:6793706 original size:22 final size:22
Alignment explanation
Indices: 6793680--6793725 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
6793670 TTGCCTTGAT
*
6793680 GTCTTAAAGATTGTGCTTGGAG
1 GTCTTAAAGATTGTGCTCGGAG
* *
6793702 GTCTTAGAGTTTGTGCTCGGAG
1 GTCTTAAAGATTGTGCTCGGAG
6793724 GT
1 GT
6793726 AATAATGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.17, C:0.11, G:0.35, T:0.37
Consensus pattern (22 bp):
GTCTTAAAGATTGTGCTCGGAG
Found at i:6793749 original size:128 final size:128
Alignment explanation
Indices: 6793474--6794313 Score: 749
Period size: 128 Copynumber: 6.5 Consensus size: 128
6793464 GAAGTTTTAG
** * * * * *
6793474 AGATTTCAAAATCTTTGAATGCTTTTCATACATTAAAGGCATTGAAACTTTAAAATTTTTAAATT
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGTATTGAAACTTTAAAA-ATTTAAAAT
* * * * * * ** *
6793539 GTTTTGCCCGTAGGTCTTAAAAATTGTACCTGAAGGTTTTAAAAATTATACTTTGAGGTATTAA
65 GTTTTGCCCGTAGGTCTTAAAGATTGTGCCCGAAGGTCTTAGAAATTATGCTCGGAGGTCTTAA
* * * * * *
6793603 AGGTTTCGAAATCTTTGAATGCTCCTCATATATTAAAGGTATTGAAACTTTAAAAATTTAAAATA
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGTATTGAAACTTTAAAAATTTAAAATG
* * ** * ** * **
6793668 TTTTG-CCTTGATGTCTTAAAGATTGTGCTTGGAGGTCTTAGAGTTTGTGCTCGGAGGTAATAA
66 TTTTGCCCGT-AGGTCTTAAAGATTGTGCCCGAAGGTCTTAGAAATTATGCTCGGAGGTCTTAA
* * ** * * *
6793731 TGATTTTAAAATCTTTGAATGCTCCTCATACAATAGATATGTTGAAACTTTAAAATTTTATAATG
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGTATTGAAACTTTAAAAATTTAAAATG
* * * * * *
6793796 TTTTACCCGAAGGTCTTAAAGTTTATGCCCGAAGGTCTTAGAAATTGTG-TCTAGAGGTCTT-A
66 TTTTGCCCGTAGGTCTTAAAGATTGTGCCCGAAGGTCTTAGAAATTATGCTC-GGAGGTCTTAA
* * * * * *
6793858 AGAATTTTAAAATATTTGAATGCTCTTCATACAATAGAGGT-GTCAGAA-TTTTAAAATTTAAAA
1 AG-ATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGTATTGA-AACTTTAAAAATTT-AAA
* * * * * * * *
6793921 ATATTTTGCCTGTAGGTCTTAAAAATTGTACCCGAAGGTCTTAAAAATTATGCTCAGAGGTTTTG
63 ATGTTTTGCCCGTAGGTCTTAAAGATTGTGCCCGAAGGTCTTAGAAATTATGCTCGGAGGTCTTA
6793986 A
128 A
* * * * * *
6793987 AGATTTCAAAATCTTTGAATGCTCCTCATATAATAGAAGCATTAAAACTTTGAAATTTTAAAATG
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGTATTGAAACTTTAAAAATTTAAAATG
* * * ** * *
6794052 TTTTGCTCG-AAGTCTTAAGGATTGTGCCCGAAATTTTTAGAAATTATGCT-GAAAGGTCTTAA
66 TTTTGCCCGTAGGTCTTAAAGATTGTGCCCGAAGGTCTTAGAAATTATGCTCG-GAGGTCTTAA
** * *
6794114 AGATTTCAAAATCTTTGAATGCTTTTCATACAATAGAGGCATTGAAACTTTGAAAATTTAAAATG
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGTATTGAAACTTTAAAAATTTAAAATG
* ** * * * * * *
6794179 CTTTATCTGGAGGTCTTAAAGAAATTATGCCTGGAGGTCTTAGAAATTATGCTTGGAGGTCTTAA
66 TTTTGCCCGTAGGTCTTAAAG--ATTGTGCCCGAAGGTCTTAGAAATTATGCTCGGAGGTCTTAA
* * * *
6794244 AGATTTCAAAATCTTTGAATGCTCCTTATATAATAGAGGTGTTGAGACTTTAAAAATTTAAAATG
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGTATTGAAACTTTAAAAATTTAAAATG
6794309 TTTTG
66 TTTTG
6794314 TCCGGAGATC
Statistics
Matches: 569, Mismatches: 127, Indels: 29
0.78 0.18 0.04
Matches are distributed among these distances:
127 121 0.21
128 287 0.50
129 67 0.12
130 93 0.16
131 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (128 bp):
AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGTATTGAAACTTTAAAAATTTAAAATG
TTTTGCCCGTAGGTCTTAAAGATTGTGCCCGAAGGTCTTAGAAATTATGCTCGGAGGTCTTAA
Found at i:6794213 original size:24 final size:24
Alignment explanation
Indices: 6794185--6794246 Score: 101
Period size: 22 Copynumber: 2.7 Consensus size: 24
6794175 AATGCTTTAT
6794185 CTGGAGGTCTTAAAGAAATTATGC
1 CTGGAGGTCTTAAAGAAATTATGC
6794209 CTGGAGGTCTT--AGAAATTATGC
1 CTGGAGGTCTTAAAGAAATTATGC
*
6794231 TTGGAGGTCTTAAAGA
1 CTGGAGGTCTTAAAGA
6794247 TTTCAAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
22 21 0.60
24 14 0.40
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (24 bp):
CTGGAGGTCTTAAAGAAATTATGC
Found at i:6794312 original size:257 final size:255
Alignment explanation
Indices: 6793474--6794313 Score: 857
Period size: 256 Copynumber: 3.3 Consensus size: 255
6793464 GAAGTTTTAG
** * * *
6793474 AGATTTCAAAATCTTTGAATGCTTTTCATACATTAAAGGCATTGAAACTTTAAAATTTTTAAATT
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGCATTGAAACTTTAAAA-TTTTAAAAT
* * * * * * * *
6793539 GTTTTGCCCGTAGGTCTTAAAAATTGTACCTGAAGGTTTTAAAAATTATACTTTGAGGTATTAAA
65 GTTTTGCCCG-AAGTCTTAAAGATTGTGCCCGAAGGTTTTAGAAATTATGC-TAGAGGTCTTAAA
* * * * * *
6793604 GGTTTCGAAATCTTTGAATGCTCCTCATATATTAAAGGTATTGAAACTTTAAAAATTTAAAATAT
128 GATTTCAAAATCTTTGAATGCTCTTCATACAATAGAGG-ATTGAAACTTTAAAAATTTAAAATAT
* * * ** * *
6793669 TTTGCCTTGATGTCTTAAAG--ATTGTGCTTGGAGGTCTTAGAGTTTGTGCTCGGAGGTAATAA
192 TTTGCCTGGAGGTCTTAAAGAAATTGTGCCTGGAGGTCTTAGAAATTATGCTCGGAGGTATTAA
* * **** *
6793731 TGATTTTAAAATCTTTGAATGCTCCTCATACAATAGATATGTTGAAACTTTAAAATTTTATAATG
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGCATTGAAACTTTAAAATTTTAAAATG
* * * * *
6793796 TTTTACCCGAAGGTCTTAAAGTTTATGCCCGAAGGTCTTAGAAATTGTGTCTAGAGGTCTT-AAG
66 TTTTGCCCGAA-GTCTTAAAGATTGTGCCCGAAGGTTTTAGAAATTATG-CTAGAGGTCTTAAAG
* * * *
6793860 AATTTTAAAATATTTGAATGCTCTTCATACAATAGAGG-TGTCAGAA-TTTTAAAATTTAAAAAT
129 -ATTTCAAAATCTTTGAATGCTCTTCATACAATAGAGGAT-TGA-AACTTTAAAAATTT-AAAAT
* * * * * * * *
6793923 ATTTTGCCTGTAGGTCTT-AA-AAATTGTACCCGAAGGTCTTAAAAATTATGCTCAGAGGTTTTG
190 ATTTTGCCTGGAGGTCTTAAAGAAATTGTGCCTGGAGGTCTTAGAAATTATGCTCGGAGGTATTA
6793986 A
255 A
* * * *
6793987 AGATTTCAAAATCTTTGAATGCTCCTCATATAATAGAAGCATTAAAACTTTGAAATTTTAAAATG
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGCATTGAAACTTTAAAATTTTAAAATG
* * ** *
6794052 TTTTGCTCGAAGTCTTAAGGATTGTGCCCGAAATTTTTAGAAATTATGCTGAAAGGTCTTAAAGA
66 TTTTGCCCGAAGTCTTAAAGATTGTGCCCGAAGGTTTTAGAAATTATGCT-AGAGGTCTTAAAGA
* * **
6794117 TTTCAAAATCTTTGAATGCTTTTCATACAATAGAGGCATTGAAACTTTGAAAATTTAAAATGCTT
130 TTTCAAAATCTTTGAATGCTCTTCATACAATAGAGG-ATTGAAACTTTAAAAATTTAAAATATTT
** * * *
6794182 TATCTGGAGGTCTTAAAGAAATTATGCCTGGAGGTCTTAGAAATTATGCTTGGAGGTCTTAA
194 TGCCTGGAGGTCTTAAAGAAATTGTGCCTGGAGGTCTTAGAAATTATGCTCGGAGGTATTAA
* * ** * *
6794244 AGATTTCAAAATCTTTGAATGCTCCTTATATAATAGAGGTGTTGAGACTTTAAAAATTTAAAATG
1 AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGCATTGAAACTTTAAAATTTTAAAATG
6794309 TTTTG
66 TTTTG
6794314 TCCGGAGATC
Statistics
Matches: 471, Mismatches: 97, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
254 3 0.01
255 110 0.23
256 214 0.45
257 144 0.31
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (255 bp):
AGATTTCAAAATCTTTGAATGCTCCTCATACAATAGAGGCATTGAAACTTTAAAATTTTAAAATG
TTTTGCCCGAAGTCTTAAAGATTGTGCCCGAAGGTTTTAGAAATTATGCTAGAGGTCTTAAAGAT
TTCAAAATCTTTGAATGCTCTTCATACAATAGAGGATTGAAACTTTAAAAATTTAAAATATTTTG
CCTGGAGGTCTTAAAGAAATTGTGCCTGGAGGTCTTAGAAATTATGCTCGGAGGTATTAA
Found at i:6795069 original size:101 final size:101
Alignment explanation
Indices: 6794905--6795091 Score: 293
Period size: 101 Copynumber: 1.9 Consensus size: 101
6794895 GTGAATGCAG
*
6794905 ATGTCTTTCTCATGATGCACAAGCAAGTGCAAATGCAAGTGATACAAATGCGAATGTCTTTTTTT
1 ATGTCTTTCTCATGATGCACAAGCAAGTGCAAATGCAAGTGATACAAATGCGAATGTCCTTTTTT
* *
6794970 GTGATGCAGATGCAAGGGATGCCAATGTGACTGCGA
66 GTGATACAAATGCAAGGGATGCCAATGTGACTGCGA
* * ** *
6795006 ATGTCTTTCTCATGATGCACACGTAAGTGTGAATGCAAGTGATGCAAATGCGAATGTCCTTTTTT
1 ATGTCTTTCTCATGATGCACAAGCAAGTGCAAATGCAAGTGATACAAATGCGAATGTCCTTTTTT
*
6795071 GTGATACAAATGCAAGTGATG
66 GTGATACAAATGCAAGGGATG
6795092 TAAATATGAG
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (101 bp):
ATGTCTTTCTCATGATGCACAAGCAAGTGCAAATGCAAGTGATACAAATGCGAATGTCCTTTTTT
GTGATACAAATGCAAGGGATGCCAATGTGACTGCGA
Found at i:6795216 original size:39 final size:39
Alignment explanation
Indices: 6795158--6795232 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
6795148 ACGGATGTTC
* * * *
6795158 TTTTTTTTATGATGTAGATGTAAGTGATGCAAATGCAAA
1 TTTTTTTTATGATGCAGATGCAAGAGATACAAATGCAAA
*
6795197 TTTTTTTTGTGATGCAGATGCAAGAGATACAAATGC
1 TTTTTTTTATGATGCAGATGCAAGAGATACAAATGC
6795233 GAATGTCTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (39 bp):
TTTTTTTTATGATGCAGATGCAAGAGATACAAATGCAAA
Found at i:6796129 original size:13 final size:14
Alignment explanation
Indices: 6796102--6796151 Score: 52
Period size: 13 Copynumber: 3.6 Consensus size: 14
6796092 TATGTTTATC
*
6796102 TTTTT-TTACTTTT
1 TTTTTGTTATTTTT
6796115 TTTTTGTT-TTGTTT
1 TTTTTGTTATT-TTT
6796129 TTGTTTGTTA-TTTT
1 TT-TTTGTTATTTTT
6796143 TTTTTGTTA
1 TTTTTGTTA
6796152 ACACATCACG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
13 13 0.41
14 12 0.38
15 7 0.22
ACGTcount: A:0.06, C:0.02, G:0.10, T:0.82
Consensus pattern (14 bp):
TTTTTGTTATTTTT
Found at i:6804465 original size:19 final size:17
Alignment explanation
Indices: 6804424--6804468 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
6804414 CATGTAAAAT
*
6804424 AAAAAAATAAATATTTA
1 AAAAAAATAAATAATTA
6804441 ACAAAAAACTAAATAAATTA
1 A-AAAAAA-TAAAT-AATTA
6804461 AAAAAAAT
1 AAAAAAAT
6804469 TTATCACAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 7 0.29
19 11 0.46
20 5 0.21
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAAAAATAAATAATTA
Found at i:6804949 original size:10 final size:10
Alignment explanation
Indices: 6804930--6804962 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
6804920 GGATGGCTTC
*
6804930 CTTTTCTTTT
1 CTTTTTTTTT
6804940 CTTTTTTTTT
1 CTTTTTTTTT
6804950 CTTTTTTTTT
1 CTTTTTTTTT
6804960 CTT
1 CTT
6804963 CGCTTCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:6809872 original size:22 final size:22
Alignment explanation
Indices: 6809847--6809906 Score: 111
Period size: 22 Copynumber: 2.7 Consensus size: 22
6809837 TCAGGCATGC
6809847 AAGCCTAGATTAGTTGGCACAT
1 AAGCCTAGATTAGTTGGCACAT
*
6809869 AAGCTTAGATTAGTTGGCACAT
1 AAGCCTAGATTAGTTGGCACAT
6809891 AAGCCTAGATTAGTTG
1 AAGCCTAGATTAGTTG
6809907 ACCTCTGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (22 bp):
AAGCCTAGATTAGTTGGCACAT
Found at i:6810107 original size:64 final size:65
Alignment explanation
Indices: 6809982--6810249 Score: 187
Period size: 67 Copynumber: 4.1 Consensus size: 65
6809972 TGGCCCCTGA
* * * ** *
6809982 TAAAGATTTTAAGCCCAATTTATCTAGCCTCTGATGAAGATTTTAAGCCCAGTTTATCTGGCCTC
1 TAAAGATTTTAAACCCAATTTATCTAGCCTCTAATGAAAATTTTAAGCCCAAATTAGCTGGCCTC
* *
6810047 TAAAGATTTTAAACCCAGATTTGT-TGGCCTC-AATGAAAATTTTAAGCCCAAATTAGCTGGCC-
1 TAAAGATTTTAAACCCA-ATTTATCTAGCCTCTAATGAAAATTTTAAGCCCAAATTAGCTGGCCT
6810109 C
65 C
* * * * *
6810110 TTGATGAAGATTTTAAGCCTAGTCTATCTAGCCT-TGGATGAAAA-TTTAAG-CCAAATTTAGCT
1 -T-A--AAGATTTTAAACCCAATTTATCTAGCCTCT-AATGAAAATTTTAAGCCCAAA-TTAGCT
6810172 GGCACTC
60 GGC-CTC
* * * * *
6810179 AGTGAAA-ATTTTAAGCTCAGTTTATCTGGCCCCTAAT-AAAATTTTAAGCCC-AATATAGCTGG
1 --T-AAAGATTTTAAACCCAATTTATCTAGCCTCTAATGAAAATTTTAAGCCCAAAT-TAGCTGG
6810241 CAC-C
62 C-CTC
6810245 TAAAG
1 TAAAG
6810250 TTAAGCCTAG
Statistics
Matches: 164, Mismatches: 22, Indels: 35
0.74 0.10 0.16
Matches are distributed among these distances:
63 4 0.02
64 28 0.17
65 23 0.14
66 19 0.12
67 73 0.45
68 13 0.08
69 1 0.01
70 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (65 bp):
TAAAGATTTTAAACCCAATTTATCTAGCCTCTAATGAAAATTTTAAGCCCAAATTAGCTGGCCTC
Found at i:6810247 original size:33 final size:34
Alignment explanation
Indices: 6809948--6810247 Score: 142
Period size: 34 Copynumber: 9.0 Consensus size: 34
6809938 TAGCTCATTG
* * ** * *
6809948 TGAAAATTTTAAGCCCAGTCTATTTGGCCCCTGA
1 TGAAAATTTTAAGCCCAATTTAGCTGGCACCTAA
* * *
6809982 T-AAAGATTTTAAGCCCAATTTATCTAGC-CTCTGA
1 TGAAA-ATTTTAAGCCCAATTTAGCTGGCAC-CTAA
* * *
6810016 TGAAGATTTTAAGCCCAGTTTATCTGGC-CTCT-A
1 TGAAAATTTTAAGCCCAATTTAGCTGGCAC-CTAA
* * *
6810049 --AAGATTTTAAACCCAGATTT-GTTGG--CCTCAA
1 TGAAAATTTTAAGCCCA-ATTTAGCTGGCACCT-AA
* *
6810080 TGAAAATTTTAAGCCCAAATTAGCTGGC-CCTTGA
1 TGAAAATTTTAAGCCCAATTTAGCTGGCACC-TAA
* * * * * * * *
6810114 TGAAGATTTTAAGCCTAGTCTATCTAGC-CTTGGA
1 TGAAAATTTTAAGCCCAATTTAGCTGGCACCT-AA
* *
6810148 TGAAAA-TTTAAGCCAAATTTAGCTGGCA-CTCAG
1 TGAAAATTTTAAGCCCAATTTAGCTGGCACCT-AA
* * * *
6810181 TGAAAATTTTAAGCTCAGTTTATCTGGCCCCTAA
1 TGAAAATTTTAAGCCCAATTTAGCTGGCACCTAA
*
6810215 T-AAAATTTTAAGCCCAATATAGCTGGCACCTAA
1 TGAAAATTTTAAGCCCAATTTAGCTGGCACCTAA
6810248 AGTTAAGCCT
Statistics
Matches: 206, Mismatches: 45, Indels: 31
0.73 0.16 0.11
Matches are distributed among these distances:
29 2 0.01
30 1 0.00
31 18 0.09
32 6 0.03
33 73 0.35
34 101 0.49
35 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (34 bp):
TGAAAATTTTAAGCCCAATTTAGCTGGCACCTAA
Found at i:6820965 original size:26 final size:27
Alignment explanation
Indices: 6820936--6820987 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
6820926 ACTTAATTAT
*
6820936 TCATTTTTTTCTTTTCTT-TTTTTTTC
1 TCATTCTTTTCTTTTCTTCTTTTTTTC
*
6820962 TCATTCTTTTCTTTTGTTCTTTTTTT
1 TCATTCTTTTCTTTTCTTCTTTTTTT
6820988 TGTTTTTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.79
Consensus pattern (27 bp):
TCATTCTTTTCTTTTCTTCTTTTTTTC
Found at i:6821045 original size:25 final size:26
Alignment explanation
Indices: 6821017--6821080 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
6821007 TCCTCTTTTA
*
6821017 TTTTCATTTTCTTCAT-TT-TTCCTTG
1 TTTTCTTTTTCTTCATCTTCTT-CTTG
* * *
6821042 TTTTTTTTTTTTTCATCTTCTTTTTG
1 TTTTCTTTTTCTTCATCTTCTTCTTG
6821068 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
6821081 GAGTAAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
25 13 0.42
26 16 0.52
27 2 0.06
ACGTcount: A:0.05, C:0.16, G:0.03, T:0.77
Consensus pattern (26 bp):
TTTTCTTTTTCTTCATCTTCTTCTTG
Found at i:6821400 original size:11 final size:11
Alignment explanation
Indices: 6821377--6821409 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
6821367 TGAAGAAATG
*
6821377 TTTTTTA-TGT
1 TTTTTTATTTT
6821387 TTTTTTATTTT
1 TTTTTTATTTT
6821398 TTTTTTATTTT
1 TTTTTTATTTT
6821409 T
1 T
6821410 CTTAGACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTATTTT
Found at i:6824286 original size:36 final size:37
Alignment explanation
Indices: 6824205--6824327 Score: 149
Period size: 37 Copynumber: 3.4 Consensus size: 37
6824195 AATGTGATGA
* * * *
6824205 AATGCATGTACTATCTATTAAAAAGTGCATGAGATGG
1 AATGCATGTACTATCTATTGAGATGTGCATGAAATGG
* * **
6824242 AATACATGTACTA-CTATTGAGATGTGTATGAAAAAG
1 AATGCATGTACTATCTATTGAGATGTGCATGAAATGG
* *
6824278 AATGCATGTACCATCTGTTGAGATGTGCATGAAATGG
1 AATGCATGTACTATCTATTGAGATGTGCATGAAATGG
6824315 AATGCATGTACTA
1 AATGCATGTACTA
6824328 CCTTATTGTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
36 27 0.39
37 43 0.61
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (37 bp):
AATGCATGTACTATCTATTGAGATGTGCATGAAATGG
Found at i:6826110 original size:7 final size:7
Alignment explanation
Indices: 6826083--6826197 Score: 99
Period size: 7 Copynumber: 16.1 Consensus size: 7
6826073 GTTTTAGTTT
6826083 GGTTTAG
1 GGTTTAG
*
6826090 GGGTTAG
1 GGTTTAG
*
6826097 GATTTTAG
1 G-GTTTAG
6826105 GGTTTAAG
1 GGTTT-AG
* *
6826113 GTTTTAA
1 GGTTTAG
*
6826120 GGATTAG
1 GGTTTAG
*
6826127 GGATTAG
1 GGTTTAG
*
6826134 GGATTAG
1 GGTTTAG
6826141 GGTTT-G
1 GGTTTAG
6826147 GGTTTTAG
1 GG-TTTAG
*
6826155 TGTTTAG
1 GGTTTAG
6826162 GGTTTA-
1 GGTTTAG
*
6826168 GATTGTAG
1 GGTT-TAG
6826176 GGTTTAG
1 GGTTTAG
6826183 GGTTTAG
1 GGTTTAG
6826190 GGTTTAG
1 GGTTTAG
6826197 G
1 G
6826198 TTTTCATGGT
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
6 6 0.07
7 66 0.75
8 16 0.18
ACGTcount: A:0.19, C:0.00, G:0.39, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:6826197 original size:21 final size:21
Alignment explanation
Indices: 6826065--6826197 Score: 99
Period size: 21 Copynumber: 6.1 Consensus size: 21
6826055 GTCTACATTT
*
6826065 GGGTTTAGGTTTTAGTTTGGTTTA
1 GGGTTTAGGGTTTAG---GGTTTA
* *
6826089 GGGGTTAGGATTTTAGGGTTTAA
1 GGGTTTAGG-GTTTAGGGTTT-A
* * * *
6826112 GGTTTTAAGGATTAGGGATTA
1 GGGTTTAGGGTTTAGGGTTTA
*
6826133 GGGATTAGGGTTT-GGGTTTTA
1 GGGTTTAGGGTTTAGGG-TTTA
* *
6826154 GTGTTTAGGGTTTA-GATTGTA
1 GGGTTTAGGGTTTAGGGTT-TA
6826175 GGGTTTAGGGTTTAGGGTTTA
1 GGGTTTAGGGTTTAGGGTTTA
6826196 GG
1 GG
6826198 TTTTCATGGT
Statistics
Matches: 86, Mismatches: 17, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
20 5 0.06
21 44 0.51
22 16 0.19
23 7 0.08
24 8 0.09
25 6 0.07
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (21 bp):
GGGTTTAGGGTTTAGGGTTTA
Found at i:6826229 original size:18 final size:18
Alignment explanation
Indices: 6826192--6826241 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
6826182 GGGTTTAGGG
* *
6826192 TTTAGGTTTTCAT-GGTA
1 TTTAGGGTTTCATGGGAA
*
6826209 TTTAGTGTTTCATGGGAA
1 TTTAGGGTTTCATGGGAA
*
6826227 TTTGGGGTTTCATGG
1 TTTAGGGTTTCATGG
6826242 AATAATGCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.16, C:0.06, G:0.30, T:0.48
Consensus pattern (18 bp):
TTTAGGGTTTCATGGGAA
Found at i:6828329 original size:21 final size:18
Alignment explanation
Indices: 6828321--6828367 Score: 71
Period size: 16 Copynumber: 2.7 Consensus size: 18
6828311 AGGATTAAGG
6828321 ATTAAAAATTAAATTAAA
1 ATTAAAAATTAAATTAAA
*
6828339 ATTAAAAA-T-AATAAAA
1 ATTAAAAATTAAATTAAA
6828355 ATTAAAAATTAAA
1 ATTAAAAATTAAA
6828368 ATCAAAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 14 0.54
17 2 0.08
18 10 0.38
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
ATTAAAAATTAAATTAAA
Found at i:6828331 original size:7 final size:7
Alignment explanation
Indices: 6828321--6828368 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
6828311 AGGATTAAGG
6828321 ATTAAAA
1 ATTAAAA
6828328 ATT--AA
1 ATTAAAA
6828333 ATT-AAA
1 ATTAAAA
6828339 ATTAAAA
1 ATTAAAA
6828346 ATAATAAAA
1 AT--TAAAA
6828355 ATTAAAA
1 ATTAAAA
6828362 ATTAAAA
1 ATTAAAA
6828369 TCAAAGATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.14
6 5 0.14
7 20 0.54
9 7 0.19
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATTAAAA
Found at i:6830622 original size:14 final size:14
Alignment explanation
Indices: 6830605--6830722 Score: 102
Period size: 14 Copynumber: 8.8 Consensus size: 14
6830595 CATAAATTTA
*
6830605 TAAAATTAAAACCC
1 TAAAATCAAAACCC
*
6830619 T-AAATCAAAACCT
1 TAAAATCAAAACCC
6830632 TAAAATCAAAACCC
1 TAAAATCAAAACCC
*
6830646 TAAAATTAAAACCC
1 TAAAATCAAAACCC
***
6830660 TATGGTCAAAACCC
1 TAAAATCAAAACCC
*
6830674 T-AAAT-AAAATCC
1 TAAAATCAAAACCC
** *
6830686 TAGGATCGAAACCC
1 TAAAATCAAAACCC
*
6830700 T-AAAT-AAAACCT
1 TAAAATCAAAACCC
6830712 TAAAATCAAAA
1 TAAAATCAAAA
6830723 TCTCAAGTGA
Statistics
Matches: 79, Mismatches: 20, Indels: 10
0.72 0.18 0.09
Matches are distributed among these distances:
12 13 0.16
13 20 0.25
14 46 0.58
ACGTcount: A:0.53, C:0.22, G:0.04, T:0.20
Consensus pattern (14 bp):
TAAAATCAAAACCC
Found at i:6830643 original size:27 final size:26
Alignment explanation
Indices: 6830605--6830722 Score: 121
Period size: 26 Copynumber: 4.4 Consensus size: 26
6830595 CATAAATTTA
*
6830605 TAAAATTAAAACCCTAAATCAAAACCT
1 TAAAATCAAAACCCTAAAT-AAAACCT
*
6830632 TAAAATCAAAACCCTAAAATTAAAACCC
1 TAAAATCAAAACCCT-AAA-TAAAACCT
***
6830660 TATGGTCAAAACCCTAAATAAAATCC-
1 TAAAATCAAAACCCTAAATAAAA-CCT
** *
6830686 TAGGATCGAAACCCTAAATAAAACCT
1 TAAAATCAAAACCCTAAATAAAACCT
6830712 TAAAATCAAAA
1 TAAAATCAAAA
6830723 TCTCAAGTGA
Statistics
Matches: 76, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
25 2 0.03
26 33 0.43
27 19 0.25
28 21 0.28
29 1 0.01
ACGTcount: A:0.53, C:0.22, G:0.04, T:0.20
Consensus pattern (26 bp):
TAAAATCAAAACCCTAAATAAAACCT
Found at i:6837818 original size:18 final size:18
Alignment explanation
Indices: 6837784--6837848 Score: 78
Period size: 18 Copynumber: 3.7 Consensus size: 18
6837774 CAAAGATTTG
6837784 CAAG-ATTTTCAGATTCA
1 CAAGAATTTTCAGATTCA
* *
6837801 CAAGAATTTTTAGTTTCA
1 CAAGAATTTTCAGATTCA
* *
6837819 TAAGAATTTTCAGATTCG
1 CAAGAATTTTCAGATTCA
*
6837837 CAAGGATTTTCA
1 CAAGAATTTTCA
6837849 AGTTTGCAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
17 4 0.10
18 35 0.90
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (18 bp):
CAAGAATTTTCAGATTCA
Found at i:6837860 original size:36 final size:35
Alignment explanation
Indices: 6837780--6837924 Score: 121
Period size: 36 Copynumber: 4.3 Consensus size: 35
6837770 AATTCAAAGA
*
6837780 TTTGCAAG-ATTTTCAGATTCACAAGAATTTTTAG
1 TTTGCAAGAATTTTCAGATTCACAAGAATTTTAAG
* *
6837814 TTT-CATAAGAATTTTCAGATTCGCAAGGATTTTCAAG
1 TTTGC--AAGAATTTTCAGATTCACAAGAATTTT-AAG
6837851 TTTGCAAGAA-TTT--GATT-ATCAA-AATTTT-AG
1 TTTGCAAGAATTTTCAGATTCA-CAAGAATTTTAAG
* *
6837881 ATTTGCAAGAA-CTT-AGATTCACAAGAATTTTTAG
1 -TTTGCAAGAATTTTCAGATTCACAAGAATTTTAAG
6837915 TTTTGCAAGA
1 -TTTGCAAGA
6837925 CACAAAGATT
Statistics
Matches: 93, Mismatches: 7, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
30 2 0.02
31 12 0.13
32 12 0.13
33 15 0.16
34 14 0.15
35 6 0.06
36 26 0.28
37 5 0.05
38 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.39
Consensus pattern (35 bp):
TTTGCAAGAATTTTCAGATTCACAAGAATTTTAAG
Found at i:6837886 original size:31 final size:34
Alignment explanation
Indices: 6837851--6837942 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
6837841 GATTTTCAAG
*
6837851 TTTGCAAGAA-TTTGATT-ATCAA-AA-TTTTAGA
1 TTTGCAAGAACTTAGATTCA-CAAGAATTTTTAGA
*
6837882 TTTGCAAGAACTTAGATTCACAAGAATTTTTAGT
1 TTTGCAAGAACTTAGATTCACAAGAATTTTTAGA
**
6837916 TTTGCAAGACACAAAGATTCACAAGAA
1 TTTGCAAGA-ACTTAGATTCACAAGAA
6837943 CTCAGATTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
31 10 0.19
32 9 0.17
33 3 0.06
34 15 0.29
35 15 0.29
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (34 bp):
TTTGCAAGAACTTAGATTCACAAGAATTTTTAGA
Found at i:6837896 original size:16 final size:16
Alignment explanation
Indices: 6837877--6837957 Score: 54
Period size: 16 Copynumber: 4.9 Consensus size: 16
6837867 TATCAAAATT
6837877 TTAGATTTGCAAGAAC
1 TTAGATTTGCAAGAAC
** *
6837893 TTAGATTCACAAGAATTT
1 TTAGATTTGCAAGAA--C
*
6837911 TTAGTTTTGCAAGACAC
1 TTAGATTTGCAAGA-AC
** **
6837928 AAAGATTCACAAGAAC
1 TTAGATTTGCAAGAAC
*
6837944 TCAGATTTGCAAGA
1 TTAGATTTGCAAGA
6837958 TTTTCAATTT
Statistics
Matches: 46, Mismatches: 16, Indels: 6
0.68 0.24 0.09
Matches are distributed among these distances:
16 25 0.54
17 9 0.20
18 11 0.24
19 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.30
Consensus pattern (16 bp):
TTAGATTTGCAAGAAC
Found at i:6837923 original size:18 final size:18
Alignment explanation
Indices: 6837777--6837924 Score: 77
Period size: 18 Copynumber: 8.7 Consensus size: 18
6837767 CACAATTCAA
*
6837777 AGATTTGCAAG-ATTTTC
1 AGATTTGCAAGAATTTTT
**
6837794 AGATTCACAAGAATTTTT
1 AGATTTGCAAGAATTTTT
*
6837812 AG-TTT-CATAAGAATTTTC
1 AGATTTGC--AAGAATTTTT
* * *
6837830 AGATTCGCAAGGATTTTC
1 AGATTTGCAAGAATTTTT
6837848 A-AGTTTGCAAGAA--TTT
1 AGA-TTTGCAAGAATTTTT
6837864 -GATTAT-CAA-AA-TTTT
1 AGATT-TGCAAGAATTTTT
*
6837879 AGATTTGCAAGAA--CTT
1 AGATTTGCAAGAATTTTT
**
6837895 AGATTCACAAGAATTTTT
1 AGATTTGCAAGAATTTTT
*
6837913 AGTTTTGCAAGA
1 AGATTTGCAAGA
6837925 CACAAAGATT
Statistics
Matches: 100, Mismatches: 17, Indels: 27
0.69 0.12 0.19
Matches are distributed among these distances:
14 2 0.02
15 9 0.09
16 25 0.25
17 14 0.14
18 47 0.47
19 2 0.02
20 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.39
Consensus pattern (18 bp):
AGATTTGCAAGAATTTTT
Found at i:6838095 original size:23 final size:22
Alignment explanation
Indices: 6838065--6838118 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
6838055 TTAAAACATA
* *
6838065 TAAAGATTTACATTATAAAATGT
1 TAAAGATTTACACTA-AAAAAGT
* *
6838088 TAACGATTCACACTAAAAAAGT
1 TAAAGATTTACACTAAAAAAGT
6838110 TAAAGATTT
1 TAAAGATTT
6838119 TATTTGAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.33
Consensus pattern (22 bp):
TAAAGATTTACACTAAAAAAGT
Found at i:6838345 original size:14 final size:14
Alignment explanation
Indices: 6838326--6838361 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
6838316 AACTCAAAAA
*
6838326 CAAAGATTCTTATT
1 CAAAGATTCTCATT
6838340 CAAAGATTCTCATT
1 CAAAGATTCTCATT
6838354 CAAAGATT
1 CAAAGATT
6838362 ATGATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (14 bp):
CAAAGATTCTCATT
Found at i:6838379 original size:21 final size:21
Alignment explanation
Indices: 6838353--6838600 Score: 110
Period size: 21 Copynumber: 11.7 Consensus size: 21
6838343 AGATTCTCAT
* *
6838353 TCAAAGATTATGATTTAAAAC
1 TCAAAGATTTTCATTTAAAAC
* *
6838374 TTAAAGATTTTCACTTAAAAC
1 TCAAAGATTTTCATTTAAAAC
* * *
6838395 TCAAATATTCTCATTTAAAATTT
1 TCAAAGATTTTCATTTAAAA--C
*
6838418 TTAAAGATTTTCATTTAAAAC
1 TCAAAGATTTTCATTTAAAAC
***** ** *
6838439 TCAAAGACAAAGATTT-TCAT
1 TCAAAGATTTTCATTTAAAAC
*
6838459 TCATAGATTCTT-ATTTAAAAC
1 TCAAAGATT-TTCATTTAAAAC
*
6838480 TCAAAGATTCTT-ACTTAAAAC
1 TCAAAGATT-TTCATTTAAAAC
***** * *
6838501 TCAAAGACAAAGATTCT--CAT
1 TCAAAGATTTTCATT-TAAAAC
*
6838521 TCAAAGATTCTCATTTAAAAC
1 TCAAAGATTTTCATTTAAAAC
*
6838542 TCTTTAAAGATTCTCATTTAAAAC
1 TC---AAAGATTTTCATTTAAAAC
* * * *
6838566 TCTAAGGTTCTCACTTAAAAC
1 TCAAAGATTTTCATTTAAAAC
6838587 TCAAAGATTTTCAT
1 TCAAAGATTTTCAT
6838601 CATTTTTAAC
Statistics
Matches: 163, Mismatches: 53, Indels: 22
0.68 0.22 0.09
Matches are distributed among these distances:
19 1 0.01
20 22 0.13
21 101 0.62
22 1 0.01
23 17 0.10
24 21 0.13
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (21 bp):
TCAAAGATTTTCATTTAAAAC
Found at i:6838501 original size:62 final size:63
Alignment explanation
Indices: 6838395--6838567 Score: 222
Period size: 62 Copynumber: 2.7 Consensus size: 63
6838385 CACTTAAAAC
* * * * * *
6838395 TCAAATATTCTCATTTAAAATTTTTAAAGATTTTCATTTAAAACTCAAAGACAAAGATTTTCAT
1 TCAAAGATTCTCATTTAAAA-CTCTAAAGATTCTCACTTAAAACTCAAAGACAAAGATTCTCAT
* * *
6838459 TCATAGATTCTTATTTAAAACTC-AAAGATTCTTACTTAAAACTCAAAGACAAAGATTCTCAT
1 TCAAAGATTCTCATTTAAAACTCTAAAGATTCTCACTTAAAACTCAAAGACAAAGATTCTCAT
*
6838521 TCAAAGATTCTCATTTAAAACTCTTTAAAGATTCTCATTTAAAACTC
1 TCAAAGATTCTCATTTAAAACTC--TAAAGATTCTCACTTAAAACTC
6838568 TAAGGTTCTC
Statistics
Matches: 93, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
62 56 0.60
63 1 0.01
64 17 0.18
65 19 0.20
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (63 bp):
TCAAAGATTCTCATTTAAAACTCTAAAGATTCTCACTTAAAACTCAAAGACAAAGATTCTCAT
Found at i:6838563 original size:14 final size:14
Alignment explanation
Indices: 6838509--6838563 Score: 73
Period size: 14 Copynumber: 4.2 Consensus size: 14
6838499 ACTCAAAGAC
*
6838509 AAAGATTCTCATTC
1 AAAGATTCTCATTT
6838523 AAAGATTCTCATTT
1 AAAGATTCTCATTT
6838537 AAA-A--CTC-TTT
1 AAAGATTCTCATTT
6838547 AAAGATTCTCATTT
1 AAAGATTCTCATTT
6838561 AAA
1 AAA
6838564 ACTCTAAGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
10 6 0.17
11 4 0.11
13 4 0.11
14 22 0.61
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.38
Consensus pattern (14 bp):
AAAGATTCTCATTT
Found at i:6839773 original size:9 final size:9
Alignment explanation
Indices: 6839696--6839792 Score: 52
Period size: 9 Copynumber: 10.3 Consensus size: 9
6839686 TCAATTTAAG
6839696 TTTCATTTT
1 TTTCATTTT
*
6839705 CTCTCATTTT
1 -TTTCATTTT
**
6839715 TTTCACATT
1 TTTCATTTT
*
6839724 TCTCATTTT
1 TTTCATTTT
**
6839733 TCACATTTT
1 TTTCATTTT
**
6839742 TCACATTTCAT
1 TTTCATTT--T
6839753 TTTC-TCTCTT
1 TTTCAT-T-TT
6839763 TTTCATTTT
1 TTTCATTTT
*
6839772 TTACATTTT
1 TTTCATTTT
*
6839781 TTTCCTTTT
1 TTTCATTTT
6839790 TTT
1 TTT
6839793 TAACTTCATC
Statistics
Matches: 69, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
9 48 0.70
10 15 0.22
11 5 0.07
12 1 0.01
ACGTcount: A:0.13, C:0.21, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTCATTTT
Found at i:6840655 original size:16 final size:16
Alignment explanation
Indices: 6840630--6840675 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
6840620 TTTACAATTT
6840630 AAGA-ATAGGAATAAA
1 AAGACATAGGAATAAA
*
6840645 AAGACATAGGAAATAAC
1 AAGACATAGG-AATAAA
*
6840662 AAGGCAT-GGAATAA
1 AAGACATAGGAATAA
6840676 TGGCTTGGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 9 0.33
16 7 0.26
17 11 0.41
ACGTcount: A:0.59, C:0.07, G:0.22, T:0.13
Consensus pattern (16 bp):
AAGACATAGGAATAAA
Found at i:6843858 original size:19 final size:20
Alignment explanation
Indices: 6843824--6843865 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
6843814 AAGCTTAATC
* *
6843824 AATTTTATTTTTTTATTGGA
1 AATTTTATTGTTTTATTGAA
6843844 AATTTT-TTGTTTTATTGAA
1 AATTTTATTGTTTTATTGAA
6843863 AAT
1 AAT
6843866 ATATCTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (20 bp):
AATTTTATTGTTTTATTGAA
Found at i:6845146 original size:22 final size:22
Alignment explanation
Indices: 6845121--6845164 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
6845111 TCTAAATCAA
6845121 GTTGTCAAAAATCTCTGATCCT
1 GTTGTCAAAAATCTCTGATCCT
6845143 GTTGTCAAAAATCTCTGATCCT
1 GTTGTCAAAAATCTCTGATCCT
6845165 AACTTTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (22 bp):
GTTGTCAAAAATCTCTGATCCT
Found at i:6847092 original size:55 final size:55
Alignment explanation
Indices: 6847032--6847145 Score: 219
Period size: 55 Copynumber: 2.1 Consensus size: 55
6847022 AAGTAACTCA
6847032 TTTATAAATAAAATGTTAAAATAATTTGCCTAACAATATCAAAGTAAACAAATAT
1 TTTATAAATAAAATGTTAAAATAATTTGCCTAACAATATCAAAGTAAACAAATAT
*
6847087 TTTATAAATAACATGTTAAAATAATTTGCCTAACAATATCAAAGTAAACAAATAT
1 TTTATAAATAAAATGTTAAAATAATTTGCCTAACAATATCAAAGTAAACAAATAT
6847142 TTTA
1 TTTA
6847146 ACTTGTCCTT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (55 bp):
TTTATAAATAAAATGTTAAAATAATTTGCCTAACAATATCAAAGTAAACAAATAT
Found at i:6847124 original size:28 final size:28
Alignment explanation
Indices: 6847038--6847124 Score: 67
Period size: 28 Copynumber: 3.1 Consensus size: 28
6847028 CTCATTTATA
*
6847038 AATAAAATGTTAAAATAATTTGCCTAAC
1 AATAACATGTTAAAATAATTTGCCTAAC
* * *
6847066 AATATCAAAG-TAAACA-AATATT--TTATA-
1 AATAAC-ATGTTAAA-ATAAT-TTGCCTA-AC
6847093 AATAACATGTTAAAATAATTTGCCTAAC
1 AATAACATGTTAAAATAATTTGCCTAAC
6847121 AATA
1 AATA
6847125 TCAAAGTAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 18
0.63 0.10 0.26
Matches are distributed among these distances:
26 5 0.12
27 15 0.35
28 18 0.42
29 5 0.12
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (28 bp):
AATAACATGTTAAAATAATTTGCCTAAC
Found at i:6847134 original size:28 final size:28
Alignment explanation
Indices: 6847048--6847134 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 28
6847038 AATAAAATGT
6847048 TAAAATAATTTGCCTAACAATATCAAAG
1 TAAAATAATTTGCCTAACAATATCAAAG
* * *
6847076 TAAACA-AATATT--TTATA-AATAAC-ATG
1 TAAA-ATAAT-TTGCCTA-ACAATATCAAAG
6847102 TTAAAATAATTTGCCTAACAATATCAAAG
1 -TAAAATAATTTGCCTAACAATATCAAAG
6847131 TAAA
1 TAAA
6847135 CAAATATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 18
0.65 0.09 0.26
Matches are distributed among these distances:
26 5 0.11
27 15 0.34
28 19 0.43
29 5 0.11
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.31
Consensus pattern (28 bp):
TAAAATAATTTGCCTAACAATATCAAAG
Found at i:6853112 original size:93 final size:94
Alignment explanation
Indices: 6852937--6853131 Score: 222
Period size: 93 Copynumber: 2.1 Consensus size: 94
6852927 GAGAATTTCA
* *
6852937 TAATGAATTTTGTGAAAAGTAAATTGTTTTTTAATCCTATCAAATGATTGGAAGATTTAAATCTT
1 TAATGAATTTTGTGAAAAGTAAA-T-TTTTTCAATCATATCAAATGATTGGAAGATTTAAATCTT
* * *
6853002 GAATTAAGTACTACCAAA-TGATTAGAGGATT
64 CAATTAAATACTACCAAACT-ATTAGAAGATT
6853033 TAATGAATTTTTGTGAAAAGT-AA-TTTTTCAATCATA-CTAAATGATTGGAAGATTTAAATC-T
1 TAATGAA-TTTTGTGAAAAGTAAATTTTTTCAATCATATC-AAATGATTGGAAGATTTAAATCTT
* *
6853094 CAAGTTAAAT-CTTTCCAAACTATTGGAAGATT
64 CAA-TTAAATAC-TACCAAACTATTAGAAGATT
6853126 TAATGA
1 TAATGA
6853132 TTATTTTTAA
Statistics
Matches: 87, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
92 5 0.06
93 59 0.68
94 1 0.01
96 9 0.10
97 13 0.15
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.38
Consensus pattern (94 bp):
TAATGAATTTTGTGAAAAGTAAATTTTTTCAATCATATCAAATGATTGGAAGATTTAAATCTTCA
ATTAAATACTACCAAACTATTAGAAGATT
Done.