Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 44 of 91
Found at i:7368561 original size:23 final size:23
Alignment explanation
Indices: 7368531--7368593 Score: 117
Period size: 23 Copynumber: 2.7 Consensus size: 23
7368521 TAATTTATAA
*
7368531 TAATATTTAATAAATATTATTTT
1 TAATATTTGATAAATATTATTTT
7368554 TAATATTTGATAAATATTATTTT
1 TAATATTTGATAAATATTATTTT
7368577 TAATATTTGATAAATAT
1 TAATATTTGATAAATAT
7368594 ACAATAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (23 bp):
TAATATTTGATAAATATTATTTT
Found at i:7369009 original size:37 final size:37
Alignment explanation
Indices: 7368934--7369009 Score: 84
Period size: 37 Copynumber: 2.1 Consensus size: 37
7368924 AGAAATAATT
* *
7368934 ATATTAATAAAATTATTAATAATTATTAATTATTAAA
1 ATATTAATAAAATTATTAATAATTATTAATAATAAAA
* *
7368971 ATATTAATAATATT-TTAATTAA-TATTGATCAATAAAA
1 ATATTAATAAAATTATTAA-TAATTATTAAT-AATAAAA
7369008 AT
1 AT
7369010 TAAACATTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
36 10 0.30
37 23 0.70
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (37 bp):
ATATTAATAAAATTATTAATAATTATTAATAATAAAA
Found at i:7369260 original size:181 final size:180
Alignment explanation
Indices: 7369016--7369878 Score: 761
Period size: 181 Copynumber: 4.8 Consensus size: 180
7369006 AAATTAAACA
* * **
7369016 TTCAAATAGTTATAACTATTTGAACAATTATCTGTTTCAAATCATTATGACCTTTTGTTTTGTCA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATATTTTGTTTTGTCA
* * *
7369081 TAAACTAATTGTTTCTATTCATAAAAGCTTATTCGAAATAAAATAATAGTAATTTATTAAAATTT
66 TAAACTAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TT
* *
7369146 C-AAAATTTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACCTAGCAAG
130 CAAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTA-CTAACAAG
* * * * * * *
7369197 TTCTAATAGTTATGAGTATTAGAACAATTATTTATTTCATATTATTATGATATTTTATTTTGTCA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATATTTTGTTTTGTCA
* * * *
7369262 TAAAAC-AATTGTTTCTATTCTTACAAGTTTATTCGAAATAAAACAATATTAATTTATTAATATT
66 T-AAACTAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT
*** * * * * *
7369326 CAAAAAATTAATAAGTTGGAGACTTCAGAAATAAATCTGTTTACTAAACAAT
130 CAAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACT-AACAAG
* * * * * *
7369378 TTCAAATAGTCATG-TTCATTTGAACTATTATCTATTTCAAATCATTACGGTATTTT-TTTGGTC
1 TTCAAATAGTTATGACT-ATTTGAACAATTATCTATTTCAAATCATTATGATATTTTGTTTTGTC
* * ** * *
7369441 GTAAAAC-AATTATTTCTATTCATACAATATTATTCAAAATAAAATAGTACTAATTTATTAATAT
65 AT-AAACTAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATAT
** * * **
7369505 TTTAAAAATTAATAAG----AGATTTAAAAACTAAATCTATTTATCGAACCGG
129 TCAAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTA-CTAACAAG
* * * ** * * **
7369554 TTCAAATAGTTATAATTATTTG-A-AATCATCTAGCTCAAATCGTTATGAT-CTTTGTTTTGTTG
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATATTTTGTTTTGTCA
* ** * * * ** * *
7369616 TAAAATAATTGTTTCTATTCATACAAATTTATTTGAAGTAAAAT-TTGTTAAATTAATAATATTC
66 TAAACTAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTC
* * *
7369680 TAAAAATTAATAAGTAAGAGATTTAAAAAATACATGC-ATTTA-TAGAACTAA-
131 AAAAAATTAATAAGTAAAAGATTTAAAAAATAAAT-CTATTTACT--AAC-AAG
* * * * * * * *
7369731 TTCAAATAGTTAAGACTATTAGAATAATTATCTATTTCAAATCGTTCTAACATTTTGTTTAGTCA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATATTTTGTTTTGTCA
* * * * *
7369796 TAAAATAATTTTTTC-AGTTCATACATGCTTATTCAAAATAAAATAATACTAATTTATTAACATT
66 TAAACTAATTGTTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT
*
7369860 CAAAAAATTAATAAATAAA
130 CAAAAAATTAATAAGTAAA
7369879 TTACATTACT
Statistics
Matches: 543, Mismatches: 118, Indels: 42
0.77 0.17 0.06
Matches are distributed among these distances:
173 34 0.06
174 58 0.11
175 1 0.00
176 39 0.07
177 44 0.08
178 2 0.00
179 21 0.04
180 125 0.23
181 215 0.40
182 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATATTTTGTTTTGTCA
TAAACTAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTC
AAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTAACAAG
Found at i:7370223 original size:23 final size:23
Alignment explanation
Indices: 7370197--7370276 Score: 56
Period size: 23 Copynumber: 3.4 Consensus size: 23
7370187 TTCAATAAGT
7370197 TAAATTATAAATTATAATCTTAA
1 TAAATTATAAATTATAATCTTAA
* * ** *
7370220 TAAATAATTAAGAATAAGC-TAA
1 TAAATTATAAATTATAATCTTAA
*
7370242 TTATAACTATAAATATATAAT-TTAA
1 -TA-AATTATAAAT-TATAATCTTAA
*
7370267 TATATTATAA
1 TAAATTATAA
7370277 TGTTAGATTA
Statistics
Matches: 40, Mismatches: 13, Indels: 8
0.66 0.21 0.13
Matches are distributed among these distances:
22 3 0.08
23 22 0.55
24 8 0.20
25 7 0.17
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.40
Consensus pattern (23 bp):
TAAATTATAAATTATAATCTTAA
Found at i:7370419 original size:23 final size:21
Alignment explanation
Indices: 7370309--7370439 Score: 58
Period size: 19 Copynumber: 6.5 Consensus size: 21
7370299 TATTATTTGA
7370309 TAATAA-TAATTAATAATATAT
1 TAATAATTAA-TAATAATATAT
*
7370330 TAATAATATTAATATTTAA-ATATT
1 TAAT-A-ATTAATA-ATAATATA-T
7370354 TAATAAATT-AT--TAAT-TACT
1 TAAT-AATTAATAATAATATA-T
7370373 T-ATAATT-ATAAT-AT--AT
1 TAATAATTAATAATAATATAT
7370389 T-AT-ATTAATAATAATATTAT
1 TAATAATTAATAATAATA-TAT
*
7370409 TAGATAATT-A-AATTATATAT
1 TA-ATAATTAATAATAATATAT
7370429 TAATAATTAAT
1 TAATAATTAAT
7370440 TTTTAAATTA
Statistics
Matches: 89, Mismatches: 3, Indels: 36
0.70 0.02 0.28
Matches are distributed among these distances:
15 3 0.03
16 9 0.10
17 9 0.10
18 4 0.04
19 14 0.16
20 9 0.10
21 10 0.11
22 6 0.07
23 12 0.13
24 13 0.15
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (21 bp):
TAATAATTAATAATAATATAT
Found at i:7370423 original size:16 final size:15
Alignment explanation
Indices: 7370308--7370435 Score: 56
Period size: 15 Copynumber: 8.5 Consensus size: 15
7370298 TTATTATTTG
7370308 ATAATAATA--ATTA
1 ATAATAATATTATTA
*
7370321 ATAAT-ATATTAATA
1 ATAATAATATTATTA
* *
7370335 ATATTAATATT-TAA
1 ATAATAATATTATTA
*
7370349 ATATTTAATAAATTATTA
1 ATA-ATAAT--ATTATTA
* *
7370367 ATTACTTATAATTA-TA
1 A-TAATAAT-ATTATTA
*
7370383 AT-ATATTA-TATTA
1 ATAATAATATTATTA
7370396 ATAATAATATTATTA
1 ATAATAATATTATTA
7370411 GATAATTAA-ATTATATA
1 -ATAA-TAATATTAT-TA
*
7370428 TTAATAAT
1 ATAATAAT
7370436 TAATTTTTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 27
0.69 0.09 0.21
Matches are distributed among these distances:
12 5 0.06
13 10 0.11
14 18 0.20
15 19 0.22
16 15 0.17
17 13 0.15
18 6 0.07
19 2 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.47
Consensus pattern (15 bp):
ATAATAATATTATTA
Found at i:7370436 original size:19 final size:19
Alignment explanation
Indices: 7370374--7370438 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 19
7370364 TTAATTACTT
7370374 ATAATTATAATATATTATATTA
1 ATAATTA-AAT-TA-TATATTA
7370396 ATAA-T-AA-TAT-TATTA
1 ATAATTAAATTATATATTA
7370411 GATAATTAAATTATATATTA
1 -ATAATTAAATTATATATTA
7370431 ATAATTAA
1 ATAATTAA
7370439 TTTTTAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
15 5 0.13
16 5 0.13
17 3 0.08
18 2 0.05
19 13 0.34
20 5 0.13
21 1 0.03
22 4 0.11
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
ATAATTAAATTATATATTA
Found at i:7370449 original size:19 final size:19
Alignment explanation
Indices: 7370407--7370451 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7370397 TAATAATATT
*
7370407 ATTAGATAATTAAATTATAT
1 ATTA-ATAATTAAATTATAA
* *
7370427 ATTAATAATTAATTTTTAA
1 ATTAATAATTAAATTATAA
7370446 ATTAAT
1 ATTAAT
7370452 TATACACCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATTAATAATTAAATTATAA
Found at i:7370452 original size:35 final size:38
Alignment explanation
Indices: 7370374--7370455 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 38
7370364 TTAATTACTT
*
7370374 ATAATTATAATATATTATATTAATAATAATATTATTAG
1 ATAATTATAATATATTATATTAATAATAATATTATTAA
7370412 ATAATTA-AAT-TA-TATATTAATAATTAAT-TT-TTAA
1 ATAATTATAATATATTATATTAATAA-TAATATTATTAA
7370446 ATTAATTATA
1 A-TAATTATA
7370456 CACCTTAGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
34 4 0.10
35 19 0.47
36 7 0.17
37 3 0.08
38 7 0.17
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (38 bp):
ATAATTATAATATATTATATTAATAATAATATTATTAA
Found at i:7370723 original size:22 final size:20
Alignment explanation
Indices: 7370697--7370739 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
7370687 ATTTAACTTC
*
7370697 ATTAATTCAATGATATATTATA
1 ATTAATT-AAT-ATAAATTATA
7370719 ATTAATTAATATAAATTATA
1 ATTAATTAATATAAATTATA
7370739 A
1 A
7370740 AAATTGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTAATTAATATAAATTATA
Found at i:7371010 original size:23 final size:23
Alignment explanation
Indices: 7370984--7371039 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
7370974 TTAGTCAATA
*
7370984 ATTAAAATATTA-ATTAATTATAT
1 ATTAAAATATCATATTAATTA-AT
* * *
7371007 ATTATAATAACATTTTAATTAAT
1 ATTAAAATATCATATTAATTAAT
7371030 ATTAAAATAT
1 ATTAAAATAT
7371040 GACTAAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTAAAATATCATATTAATTAAT
Found at i:7371265 original size:14 final size:14
Alignment explanation
Indices: 7371246--7371275 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7371236 TGTAGTATGA
*
7371246 ATAATTAACTTAAT
1 ATAATTAACCTAAT
7371260 ATAATTAACCTAAT
1 ATAATTAACCTAAT
7371274 AT
1 AT
7371276 GTCATAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (14 bp):
ATAATTAACCTAAT
Found at i:7371879 original size:181 final size:175
Alignment explanation
Indices: 7371320--7372130 Score: 647
Period size: 176 Copynumber: 4.5 Consensus size: 175
7371310 TTTTATTCCA
* * * *
7371320 AATAAGCTTGTATGAACTAAAATAATTGTTTTATGACTAAACAAAAGGAT-AGAATGATTTGAAA
1 AATAAGCTTGTATGAA-TAAAACAATTGTTTTATGACAAAACAAAAGG-TCATAACGATTTGAAA
* * * * *
7371384 TAGATAATTATTCTGATAGTCTTAACTATTTGAACTAGTTCGGCT-AACATATTTATTTTTTAAA
64 TAGATAATTGTTCTAATAGTCATAACTATTTGAACTAGTTCAG-TAAACAGATTTATTTTTTAAA
* * * **
7371448 TCTCTTATTAATTTTTG-AAATATTATTAAATTAGTATCATTTTAATCCG
128 TCTCTTATTAA--TTTGCAAATATTAATAAATTAGTATTATTTTATTTTG
* * * * * * * *
7371497 AATAAGCTTGTATGAA-AGGAAATAGTTGTTGTATGGCAAAA-TAAAGATCA-ATATGATTTGAG
1 AATAAGCTTGTATGAATA--AAACAATTGTTTTATGACAAAACAAAAGGTCATA-ACGATTTGAA
* * *
7371559 ATAGATAATTGTT-TAAATAGTCATAACTATTTGAACTAGTTTAGTAAATAGATTTAATTTTTAA
63 ATAGATAATTGTTCT-AATAGTCATAACTATTTGAACTAGTTCAGTAAACAGATTTATTTTTTAA
* * **
7371623 ATCTCTTATTAATTTTCCAAATATTAATAAATCAAAATTATTTTATTTTG
127 ATCTCTTATTAA-TTTGCAAATATTAATAAATTAGTATTATTTTATTTTG
* * * *
7371673 AATAA-TTCTGTATGAACAAAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
1 AATAAGCT-TGTATGAA-TAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAA
* * * * * *
7371737 TAGATAATTGTTCTAATGGACATGACTATTTGAACTTGTTCGGTAAACAAATTTATTTTTTAAAT
64 TAGATAATTGTTCTAATAGTCATAACTATTTGAACTAGTTCAGTAAACAGATTTATTTTTTAAAT
* * *
7371802 CTCCTACCCATTAATTTGCAAAATATTAATAAACTAGTATTATTGTATTTTG
129 CT-CT---TATTAATTTGC-AAATATTAATAAATTAGTATTATTTTATTTTG
* * * * * ** * *
7371854 AATAAACTTGTGTGAATAGAAACAATTATTTTATGACAAAATAGAATATCATAACTATTAGAAAT
1 AATAAGCTTGTATGAATA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAAT
* * * * * ** *
7371919 AAAAAATTGTTCAAATAGTTATAACTATTTGAGCTTCTT-AGTAAATAGATTTATTTTTTTTAAA
65 AGATAATTGTTCTAATAGTCATAACTATTTGAACTAGTTCAGTAAACAGATTTA--TTTTTTAAA
* *
7371983 TCTTTTACTTATTAATTATTG-GAATATTATTAAATTAGTATTATTTTATTTTG
128 TC---T-CTTATTAA-T-TTGCAAATATTAATAAATTAGTATTATTTTATTTTG
* * * * * *
7372036 AATAAGCTTATATAGGCAT-AAACAATTGGTTCATCACAAAACAAAAGGTCATAACTATTTGAAA
1 AATAAGCTTGTAT--GAATAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAA
* * *
7372100 TAGATAACTGTT-TAAGTAGTCAGATCTATTT
64 TAGATAATTGTTCTAA-TAGTCATAACTATTT
7372131 AAACATGTTC
Statistics
Matches: 506, Mismatches: 98, Indels: 55
0.77 0.15 0.08
Matches are distributed among these distances:
175 10 0.02
176 132 0.26
177 105 0.21
178 5 0.01
180 16 0.03
181 116 0.23
182 112 0.22
183 1 0.00
184 6 0.01
185 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (175 bp):
AATAAGCTTGTATGAATAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATA
GATAATTGTTCTAATAGTCATAACTATTTGAACTAGTTCAGTAAACAGATTTATTTTTTAAATCT
CTTATTAATTTGCAAATATTAATAAATTAGTATTATTTTATTTTG
Found at i:7372061 original size:182 final size:175
Alignment explanation
Indices: 7371434--7372101 Score: 467
Period size: 181 Copynumber: 3.7 Consensus size: 175
7371424 CGGCTAACAT
* * * **
7371434 ATTTATTTTTTAAATC-T-CTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTTAATCCG
1 ATTTATTTTTTAAATCTTACTTATTAA-TTTTGAAATATTAATAAATTAGTATTATTTTATTTTG
* * * * * * * * * * ** * *
7371497 AATAAGCTTGTAT-GAAAGGAAATAGTTGTTGTATGGCAAAA-TAAAGATCA-ATATGATTTGAG
65 AATAAACTTATATAG-CA-TAAACAATTATTTTATGACAAAACAAAAGATCATA-ACAATTAGAA
* * *
7371559 ATAGATAATTGTTTAAATAGTCATAACTATTTGAACTAGTTTAGTAAATAG
127 ATAAAAAATTGTTCAAATAGTCATAACTATTTGAACT--TTTAGTAAATAG
* * * **
7371610 ATTTAATTTTTAAATC-T-CTTATTAATTTTCCAAATATTAATAAATCAAAATTATTTTATTTTG
1 ATTTATTTTTTAAATCTTACTTATTAATTTT-GAAATATTAATAAATTAGTATTATTTTATTTTG
* * * *
7371673 AATAATTCTGTATGA-A-CAAAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAA
65 AATAA-ACT-TAT-ATAGCATAAACAATTATTTTATGACAAAACAAAAGATCATAACAATTAGAA
* * * * * * * * *
7371736 ATAGATAATTGTTCTAATGGACATGACTATTTGAACTTGTTCGGTAAACAA
127 ATAAAAAATTGTTCAAATAGTCATAACTATTTGAACTT-TT-AGTAAATAG
** * *
7371787 ATTTATTTTTTAAATCTCCTACCCATTAA-TTTGCAAAATATTAATAAACTAGTATTATTGTATT
1 ATTTATTTTTTAAATCT--TACTTATTAATTTTG--AAATATTAATAAATTAGTATTATTTTATT
* * * * * * *
7371851 TTGAATAAACTTGTGT-GAATAGAAACAATTATTTTATGACAAAATAGAATATCATAACTATTAG
62 TTGAATAAACTTATATAGCAT--AAACAATTATTTTATGACAAAACAAAAGATCATAACAATTAG
* *
7371915 AAATAAAAAATTGTTCAAATAGTTATAACTATTTGAGCTTCTTAGTAAATAG
125 AAATAAAAAATTGTTCAAATAGTCATAACTATTTGAACTT-TTAGTAAATAG
* *
7371967 ATTTATTTTTTTTAAATCTTTTACTTATTAATTATTGGAATATTATTAAATTAGTATTATTTTAT
1 ATTTA--TTTTTTAAATC--TTACTTATTAATT-TTGAAATATTAATAAATTAGTATTATTTTAT
* ** * * * * *
7372032 TTTGAATAAGCTTATATAGGCATAAACAATTGGTTCATCACAAAACAAAAGGTCATAACTATTTG
61 TTTGAATAAACTTATATA-GCATAAACAATTATTTTATGACAAAACAAAAGATCATAACAATTAG
7372097 AAATA
125 AAATA
7372102 GATAACTGTT
Statistics
Matches: 382, Mismatches: 83, Indels: 48
0.74 0.16 0.09
Matches are distributed among these distances:
175 5 0.01
176 72 0.19
177 70 0.18
178 3 0.01
179 4 0.01
180 17 0.04
181 108 0.28
182 95 0.25
183 1 0.00
184 7 0.02
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (175 bp):
ATTTATTTTTTAAATCTTACTTATTAATTTTGAAATATTAATAAATTAGTATTATTTTATTTTGA
ATAAACTTATATAGCATAAACAATTATTTTATGACAAAACAAAAGATCATAACAATTAGAAATAA
AAAATTGTTCAAATAGTCATAACTATTTGAACTTTTAGTAAATAG
Found at i:7372256 original size:101 final size:101
Alignment explanation
Indices: 7372081--7372282 Score: 359
Period size: 101 Copynumber: 2.0 Consensus size: 101
7372071 ACAAAACAAA
*
7372081 AGGTCATAACTATTTGAAATAGATAACTGTTTAAGTAGTCAGATCTATTTAAACATGTTCAAAAA
1 AGGTCATAACTATTTGAAATAGATAACTGTTTAAATAGTCAGATCTATTTAAACATGTTCAAAAA
* *
7372146 ATAAATTTATTTTTAAAATTTTTACTTATTAAATTT
66 ACAAATTTATTTTTAAAAGTTTTACTTATTAAATTT
* *
7372182 AGGTCATAACTATTTGAAATAGATAATTGTTTAAATAGTCAGATCTATTTAAACATGTTCAAGAA
1 AGGTCATAACTATTTGAAATAGATAACTGTTTAAATAGTCAGATCTATTTAAACATGTTCAAAAA
7372247 ACAAATTTATTTTTAAAAGTTTTACTTATTAAATTT
66 ACAAATTTATTTTTAAAAGTTTTACTTATTAAATTT
7372283 TGAAATATTA
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 96 1.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (101 bp):
AGGTCATAACTATTTGAAATAGATAACTGTTTAAATAGTCAGATCTATTTAAACATGTTCAAAAA
ACAAATTTATTTTTAAAAGTTTTACTTATTAAATTT
Found at i:7372486 original size:143 final size:142
Alignment explanation
Indices: 7372226--7372491 Score: 392
Period size: 143 Copynumber: 1.9 Consensus size: 142
7372216 ATAGTCAGAT
*
7372226 CTATTTAAACATGTTCAAGAAACAAATTTATTTTTAAAAGTTTTACTTATTAAATTTTGAAATAT
1 CTATTTAAACATGTTCAAAAAACAAATTTATTTTTAAAAGTTTTACTTATTAAATTTTGAAATAT
* * * *
7372291 TAATAAATTTAATTATTTTATTAGGAATAAGCTTGTATGGATAGAAACAATTGGTTTATCATGAA
66 TAATAAATTTAATTATTTTATTAGAAATAAGCTTGTATGAACAAAAACAATT-GTTTATCATGAA
7372356 ACAAAGGTCATAG
130 ACAAAGGTCATAG
* *
7372369 CTATTTGAACATGTTCAAAAAACAAATTTATTTTTCAAA-TCTTTACTTATTAAATTTT-AGAAT
1 CTATTTAAACATGTTCAAAAAACAAATTTATTTTTAAAAGT-TTTACTTATTAAATTTTGA-AAT
* * * *
7372432 ATTAATTAATTTAATTATTTTATTCGAAATAAGCTTGTATTAACAAAAATAATTGTTTAT
64 ATTAATAAATTTAATTATTTTATTAGAAATAAGCTTGTATGAACAAAAACAATTGTTTAT
7372492 GACAAAACAA
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
142 8 0.07
143 102 0.93
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (142 bp):
CTATTTAAACATGTTCAAAAAACAAATTTATTTTTAAAAGTTTTACTTATTAAATTTTGAAATAT
TAATAAATTTAATTATTTTATTAGAAATAAGCTTGTATGAACAAAAACAATTGTTTATCATGAAA
CAAAGGTCATAG
Found at i:7373850 original size:181 final size:181
Alignment explanation
Indices: 7373407--7374175 Score: 776
Period size: 181 Copynumber: 4.3 Consensus size: 181
7373397 AATAGTCTTA
* * * *
7373407 ATTTGAGCTAATTTGATAAACAGATTTATTTTTTAAA-AT-TT--TTATTAATTTTTGAAATATT
1 ATTTGAACTAGTTTGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATT
* * * *
7373468 AATAGATTAGTATTATTTTATTTCAAACAAACTTA-TATGAACAAAAACAT-TAGTTTTATGACA
66 AATAAATTAGTATTATTTTATTTCAAATAAAC-TAGTATGAATAAAAA-ATATTGTTTTATGACA
* * *
7373531 AAACAAAAGGTCATAACAATTTGAAATAGATAATT-TTCAAATAGTCATAATT
129 AAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAGATAGTCATAACT
* * * * *
7373583 ATTTGAACTAGTTAGGTAAACAGAATTATTTGTTAATTCTCTTACTTATTAATTTTTGAAATTTT
1 ATTTGAACTAGTTTGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATT
* **
7373648 AATAAATTTA-TTTTATTTTA-TTCTAAATAAACTAGTATGAATTGAAAATATTGTTTTATGACA
66 AATAAA-TTAGTATTATTTTATTTC-AAATAAACTAGTATGAATAAAAAATATTGTTTTATGACA
** **
7373711 AAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAGATAGTTTTAACT
129 AAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAGATAGTCATAACT
* **
7373764 ATTTAAACTAGTTTGGTAAACA-ATTTTATTTTTTAAATCTCTT-CGTTATTAATTTTCAAAATA
1 ATTTGAACTAGTTTGGTAAACAGA-TTTATTTTTTAAATCTCTTAC-TTATTAATTTTTGAAATA
* * * * * * *
7373827 TTATTAGATTAGTTTTATTTTATTTCAAATAAGCTTGTATGAA-CAGAAATAATTGTTTTATGAC
64 TTAATAAATTAGTATTATTTTATTTCAAATAAACTAGTATGAATAAAAAAT-ATTGTTTTATGAC
* * * **
7373891 AAAACAAAAGGTTATAACAATTTGAAGTATATAACTGCTCTAG-TAGTCATAACT
128 AAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTC-AGATAGTCATAACT
* * * * *
7373945 ATTTGAATTGGTTTTGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTGGAAAGATT
1 ATTTGAACTAGTTTGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATT
* * * * * ** *
7374010 AATAAATTAGTATTATTTTATTCCGAATAAGCTTGTATG-ATAAAAAACAATTGTCATATGACCA
66 AATAAATTAGTATTATTTTATTTCAAATAAACTAGTATGAATAAAAAA-TATTGTTTTATGACAA
* * * * * * * *
7374074 AACAAAAGGTAAGAACAATTTAAAATAGATAATTATTGAAATGGCCATAATT
130 AACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAGATAGTCATAACT
* * * *
7374126 ATTTGAAC-AGATTTGGTAAACATATTCACTTTTTAAATCACTTACTTATT
1 ATTTGAACTAG-TTTGGTAAACAGATTTATTTTTTAAATCTCTTACTTATT
7374176 TGAATTTGTT
Statistics
Matches: 487, Mismatches: 85, Indels: 37
0.80 0.14 0.06
Matches are distributed among these distances:
176 30 0.06
177 1 0.00
178 2 0.00
179 7 0.01
180 105 0.22
181 335 0.69
182 7 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
ATTTGAACTAGTTTGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATT
AATAAATTAGTATTATTTTATTTCAAATAAACTAGTATGAATAAAAAATATTGTTTTATGACAAA
ACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAGATAGTCATAACT
Found at i:7374143 original size:362 final size:359
Alignment explanation
Indices: 7373417--7374164 Score: 866
Period size: 362 Copynumber: 2.1 Consensus size: 359
7373407 ATTTGAGCTA
* * **
7373417 ATTTGATAAACAGA-TTTATTTTTTAAA-ATTTTTATTAATTTTTGAAATATTAATAGATTAGTA
1 ATTTGGTAAACA-ATTTTATTTTTTAAATCTTTTTATTAATTTTCAAAATATTAATAGATTAGTA
7373480 TTATTTTATTTCAAACAAACTTATATGAACAAAAACATTAGTTTTATGACAAAACAAAAGGTCAT
65 TTATTTTATTTCAAACAAACTTATATGAACAAAAACATTAGTTTTATGACAAAACAAAAGGTCAT
** *
7373545 AACAATTTGAAATAGATAATTTTCAAATAGTCATAATTATTTGAACTAGTTAGGTAAACAGAATT
130 AACAATTTGAAATAGATAATGCTCAAATAGTCATAACTATTTGAACTAGTTAGGTAAACAGAATT
* * ** * *
7373610 ATTTGTTAATTCTCTTACTTATTAATTTTTGAAATTTTAATAAATTTATTTTATTTTATTCTAAA
195 ATTTGTTAAATCTCTTACTTATTAATTTTGGAAAGATTAATAAATTTATATTATTTTATTCCAAA
** * ** * * ** *
7373675 TAAACTAGTATGAATTGAAAATATTGTTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAG
260 TAAACTAGTATGAATAAAAAAAATTGTCATATGACAAAACAAAAGGTAAGAACAATTTAAAATAG
* ***
7373740 ATAATTATTCAGATAGTTTTAACTATTTAAACTAG
325 ATAATTATTCAAATAGCCATAACTATTTAAACTAG
*
7373775 -TTTGGTAAACAATTTTATTTTTTAAATCTCTTCGTTATTAATTTTCAAAATATTATTAGATTAG
1 ATTTGGTAAACAATTTTATTTTTTAAATCT-TT--TTATTAATTTTCAAAATATTAATAGATTAG
* * * *
7373839 TTTTATTTTATTTCAAATAAGCTTGTATGAACAGAAATA-ATT-GTTTTATGACAAAACAAAAGG
63 TATTATTTTATTTCAAACAAACTTATATGAACA-AAA-ACATTAGTTTTATGACAAAACAAAAGG
* * * * * * * **
7373902 TTATAACAATTTGAAGTATATAACTGCTCTAGTAGTCATAACTATTTGAATTGGTTTTGTAAACA
126 TCATAACAATTTGAAATAGATAA-TGCTCAAATAGTCATAACTATTTGAACTAGTTAGGTAAACA
* *
7373967 GATTTATTTTTTAAATCTCTTACTTATTAATTTTGGAAAGATTAATAAA-TTAGTATTATTTTAT
190 GAATTATTTGTTAAATCTCTTACTTATTAATTTTGGAAAGATTAATAAATTTA-TATTATTTTAT
* * * *
7374031 TCCGAATAAGCTTGTATG-ATAAAAAACAATTGTCATATGACCAAACAAAAGGTAAGAACAATTT
254 TCCAAATAAACTAGTATGAATAAAAAA-AATTGTCATATGACAAAACAAAAGGTAAGAACAATTT
* * * *
7374095 AAAATAGATAATTATTGAAATGGCCATAATTATTTGAAC-AG
318 AAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTAG
* *
7374136 ATTTGGTAAAC-ATATTCACTTTTTAAATC
1 ATTTGGTAAACAAT-TTTATTTTTTAAATC
7374165 ACTTACTTAT
Statistics
Matches: 325, Mismatches: 53, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
356 1 0.00
357 23 0.07
358 1 0.00
359 2 0.01
361 110 0.34
362 187 0.58
363 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (359 bp):
ATTTGGTAAACAATTTTATTTTTTAAATCTTTTTATTAATTTTCAAAATATTAATAGATTAGTAT
TATTTTATTTCAAACAAACTTATATGAACAAAAACATTAGTTTTATGACAAAACAAAAGGTCATA
ACAATTTGAAATAGATAATGCTCAAATAGTCATAACTATTTGAACTAGTTAGGTAAACAGAATTA
TTTGTTAAATCTCTTACTTATTAATTTTGGAAAGATTAATAAATTTATATTATTTTATTCCAAAT
AAACTAGTATGAATAAAAAAAATTGTCATATGACAAAACAAAAGGTAAGAACAATTTAAAATAGA
TAATTATTCAAATAGCCATAACTATTTAAACTAG
Found at i:7374361 original size:229 final size:228
Alignment explanation
Indices: 7373944--7374404 Score: 498
Period size: 229 Copynumber: 2.0 Consensus size: 228
7373934 TAGTCATAAC
** * **
7373944 TATTTGAATTGGTTTTGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTGGAAAGAT
1 TATTTGAATTGGTTCGGTAAACAGATTTATTTTTTAAATCTCTTACATATTAATTTTCCAAAGAT
* * *
7374009 TAATAAATTAGTATTATTTTATTCCGAATAAGCTTGTATGATAAAAAACAATTGTCATATGACCA
66 TAATAAATTAGTATTAATTTATTCCGAATAAGCTTGCATGATAAAAAACAATTGTCATATAACCA
* * * ** **
7374074 AACAAAAGGTAAGAACAATTTAAAATAGATAATTATTGAAATGGCCATAATTATTTGAACAGATT
131 AACAAAAGATAAGAACAATATAAAATAGATAATTATTCAAATAACCATAACAATTTGAACAGATT
** *
7374139 TGGTAAACATATTCACTTTTTAAATCACTTACT
196 CAGTAAACAAATTCACTTTTTAAATCACTTACT
* * *
7374172 TATTTGAATTTGTTCGGTAAATAGATTTATTTTTTAAAATCTCTTTCATATTAATTTTCCAAATG
1 TATTTGAATTGGTTCGGTAAACAGATTTATTTTTT-AAATCTCTTACATATTAATTTTCCAAA-G
* ** *
7374237 -TTAATAAATTAGTATTAATTTATTCTGAATAAGCTTGCATGA-ACTGAAACAATTG-CTTTATA
64 ATTAATAAATTAGTATTAATTTATTCCGAATAAGCTTGCATGATA-AAAAACAATTGTC-ATATA
* ** * * ***
7374299 ACTAAACAAAAGATCAA-AATGATATGAAATAGATAATTATTCTAATAATTTTAACAATTTGAAC
127 ACCAAACAAAAGAT-AAGAACAATATAAAATAGATAATTATTCAAATAACCATAACAATTTGAAC
* * *** *
7374363 TGATTCAGTAAATAAATTTGTTTTTTAAATCTCTTACT
191 AGATTCAGTAAACAAATTCACTTTTTAAATCACTTACT
7374401 TATT
1 TATT
7374405 AATTTTTAGA
Statistics
Matches: 189, Mismatches: 39, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
228 33 0.17
229 153 0.81
230 3 0.02
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (228 bp):
TATTTGAATTGGTTCGGTAAACAGATTTATTTTTTAAATCTCTTACATATTAATTTTCCAAAGAT
TAATAAATTAGTATTAATTTATTCCGAATAAGCTTGCATGATAAAAAACAATTGTCATATAACCA
AACAAAAGATAAGAACAATATAAAATAGATAATTATTCAAATAACCATAACAATTTGAACAGATT
CAGTAAACAAATTCACTTTTTAAATCACTTACT
Found at i:7376258 original size:15 final size:15
Alignment explanation
Indices: 7376186--7376259 Score: 55
Period size: 15 Copynumber: 4.8 Consensus size: 15
7376176 AATATTTGTA
*
7376186 AATAATTATAATTA-T
1 AATAATTA-AATAAGT
7376201 AATAATATAAAT-AGAT
1 AATAAT-TAAATAAG-T
* *
7376217 AATAATTAATATTACT
1 AATAATTAA-ATAAGT
7376233 AAT-ATTCAAATAAGT
1 AATAATT-AAATAAGT
7376248 AATAATTAAATA
1 AATAATTAAATA
7376260 TTACTTATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
14 1 0.02
15 27 0.55
16 20 0.41
17 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (15 bp):
AATAATTAAATAAGT
Found at i:7376293 original size:24 final size:23
Alignment explanation
Indices: 7376266--7376320 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
7376256 AATATTACTT
*
7376266 ATATAAACTAATATATTAATAACA
1 ATATAAACTAATATA-TAATAAAA
* * *
7376290 ATATATATTAATTTATAATAAAA
1 ATATAAACTAATATATAATAAAA
7376313 ATTATAAA
1 A-TATAAA
7376321 TAGTAATAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATAAACTAATATATAATAAAA
Found at i:7376653 original size:26 final size:26
Alignment explanation
Indices: 7376599--7376650 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7376589 ATGTTATTAT
* *
7376599 ATAATTTATTAATTATTAATTAATAA
1 ATAATTTATTAAATATTAATAAATAA
7376625 ATAATTTATTAAATATT-ATAAATAA
1 ATAATTTATTAAATATTAATAAATAA
7376650 A
1 A
7376651 ATAGTAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATAATTTATTAAATATTAATAAATAA
Found at i:7376917 original size:18 final size:18
Alignment explanation
Indices: 7376894--7376951 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
7376884 TAAAGATAAT
7376894 TAATTTAATTAAATTACC
1 TAATTTAATTAAATTACC
7376912 TAATTTAA-T--ATTA--
1 TAATTTAATTAAATTACC
7376925 TAATATT-ATTAAATTACC
1 TAAT-TTAATTAAATTACC
7376943 TAATTTAAT
1 TAATTTAAT
7376952 ATTATAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 14
0.70 0.00 0.30
Matches are distributed among these distances:
13 5 0.15
14 3 0.09
15 4 0.12
16 4 0.12
17 3 0.09
18 14 0.42
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (18 bp):
TAATTTAATTAAATTACC
Found at i:7376938 original size:31 final size:31
Alignment explanation
Indices: 7376901--7376971 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
7376891 AATTAATTTA
7376901 ATTAAATTACCTAATTTAATATTATAATATT
1 ATTAAATTACCTAATTTAATATTATAATATT
7376932 ATTAAATTACCTAATTTAATATTATAATATT
1 ATTAAATTACCTAATTTAATATTATAATATT
7376963 ATTAAATTA
1 ATTAAATTA
7376972 TAGACAATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (31 bp):
ATTAAATTACCTAATTTAATATTATAATATT
Found at i:7377287 original size:24 final size:24
Alignment explanation
Indices: 7377260--7377332 Score: 69
Period size: 26 Copynumber: 3.0 Consensus size: 24
7377250 TAATAATTTC
7377260 AATTATA-AAATAATCATAGTTATA
1 AATTATATAAATAATCA-AGTTATA
* *
7377284 AATTATATTTTAATAATCAAGTTATT
1 AATTATA--TAAATAATCAAGTTATA
*
7377310 AATTATATATAATTATCAA-TTAT
1 AATTATATA-AATAATCAAGTTAT
7377333 GATACTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
24 12 0.29
25 8 0.20
26 13 0.32
27 8 0.20
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (24 bp):
AATTATATAAATAATCAAGTTATA
Found at i:7377438 original size:48 final size:49
Alignment explanation
Indices: 7377380--7377476 Score: 119
Period size: 48 Copynumber: 2.0 Consensus size: 49
7377370 TTGCTATTTA
*
7377380 TAATAAATTA-TAATATTTATGATAAATATTAT-ATTA-AATAATTTAAC
1 TAATAAATTATTAA-ATATATGATAAATATTATAATTATAATAATTTAAC
* *
7377427 TAATATAATTATTAAATATATTATAATTATTATAAATTATAATAATTTAA
1 TAATA-AATTATTAAATATATGATAAATATTAT-AATTATAATAATTTAA
7377477 ATTTACTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
47 5 0.12
48 20 0.48
49 3 0.07
50 4 0.10
51 10 0.24
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (49 bp):
TAATAAATTATTAAATATATGATAAATATTATAATTATAATAATTTAAC
Found at i:7377439 original size:25 final size:24
Alignment explanation
Indices: 7377404--7377476 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 24
7377394 ATTTATGATA
*
7377404 AATATTATATTAAATAATTTAACT
1 AATATAATATTAAATAATTTAACT
*
7377428 AATATAATTATTAAATATATTATAATT
1 AATATAA-TATTAAATA-ATT-TAACT
*
7377455 ATTATAA-ATTATAATAATTTAA
1 AATATAATATTA-AATAATTTAA
7377477 ATTTACTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
24 9 0.21
25 16 0.38
26 7 0.17
27 10 0.24
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (24 bp):
AATATAATATTAAATAATTTAACT
Found at i:7377448 original size:9 final size:9
Alignment explanation
Indices: 7377430--7377473 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
7377420 ATTTAACTAA
7377430 TATAATTAT
1 TATAATTAT
7377439 TA-AATATAT
1 TATAAT-TAT
7377448 TATAATTAT
1 TATAATTAT
7377457 TATAAATTAT
1 TAT-AATTAT
*
7377467 AATAATT
1 TATAATT
7377474 TAAATTTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
8 3 0.10
9 17 0.55
10 11 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (9 bp):
TATAATTAT
Found at i:7377467 original size:16 final size:16
Alignment explanation
Indices: 7377430--7377479 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
7377420 ATTTAACTAA
*
7377430 TATAATTATTAAATATAT
1 TATAATTATT--ATAAAT
7377448 TATAATTATTATAAAT
1 TATAATTATTATAAAT
*
7377464 TATAATAATT-TAAAT
1 TATAATTATTATAAAT
7377479 T
1 T
7377480 TACTCTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 6 0.20
16 14 0.47
18 10 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TATAATTATTATAAAT
Found at i:7377924 original size:28 final size:29
Alignment explanation
Indices: 7377862--7377916 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
7377852 TCTTATTATA
*
7377862 TAATT-TATAATAATAATAATTTAATTGT
1 TAATTATATAATAATAATAATTTAATAGT
7377890 TAATTATATAAT-ATAATAATTTTAATA
1 TAATTATATAATAATAATAA-TTTAATA
7377917 AGTATTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
TAATTATATAATAATAATAATTTAATAGT
Found at i:7378317 original size:23 final size:20
Alignment explanation
Indices: 7378278--7378334 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
7378268 TATATAGAAT
7378278 ATAAGTTAATA-TA-ATTTAA
1 ATAA-TTAATATTATATTTAA
*
7378297 ATAAGATTAATAATTATATTTAT
1 AT-A-ATTAAT-ATTATATTTAA
7378320 ATAATTAATATTATA
1 ATAATTAATATTATA
7378335 ATATAAGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
19 2 0.06
20 12 0.38
21 8 0.25
22 3 0.09
23 7 0.22
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
ATAATTAATATTATATTTAA
Found at i:7378673 original size:13 final size:14
Alignment explanation
Indices: 7378642--7378674 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7378632 TAATATACTA
*
7378642 TTAATAATAACATT
1 TTAATTATAACATT
7378656 TTAATTATAACA-T
1 TTAATTATAACATT
7378669 TTAATT
1 TTAATT
7378675 GTATTCTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
TTAATTATAACATT
Found at i:7379143 original size:22 final size:22
Alignment explanation
Indices: 7379118--7379217 Score: 75
Period size: 22 Copynumber: 4.5 Consensus size: 22
7379108 ATAATATAAA
7379118 ATAAAATAATTTAATTATTTAT
1 ATAAAATAATTTAATTATTTAT
* *
7379140 ATAAAA-AATGTTAAATATTAAAT
1 ATAAAATAAT-TTAATTATT-TAT
* *
7379163 ATTAATTATAATTTAATTAATTAT
1 A-TAA-AATAATTTAATTATTTAT
7379187 -TCAAAAT-ATTT-ATT-TTTAT
1 AT-AAAATAATTTAATTATTTAT
*
7379206 ATCAAATAATTT
1 ATAAAATAATTT
7379218 CGTATTTTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 18
0.69 0.10 0.20
Matches are distributed among these distances:
19 8 0.13
20 8 0.13
21 7 0.11
22 17 0.28
23 5 0.08
24 5 0.08
25 8 0.13
26 3 0.05
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (22 bp):
ATAAAATAATTTAATTATTTAT
Found at i:7379164 original size:23 final size:23
Alignment explanation
Indices: 7379104--7379178 Score: 57
Period size: 22 Copynumber: 3.2 Consensus size: 23
7379094 AATATATATA
7379104 TTAAATAATATAAA-ATAAAATAAT
1 TTAAAT-AT-TAAATATAAAATAAT
* *
7379128 TTAATTATT-TATATAAAA-AAT
1 TTAAATATTAAATATAAAATAAT
*
7379149 GTTAAATATTAAATATTAATTATAAT
1 -TTAAATATTAAATA-TAA-AATAAT
7379175 TTAA
1 TTAA
7379179 TTAATTATTC
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
21 4 0.10
22 15 0.38
23 5 0.12
24 8 0.20
25 5 0.12
26 3 0.08
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (23 bp):
TTAAATATTAAATATAAAATAAT
Found at i:7379261 original size:25 final size:25
Alignment explanation
Indices: 7379233--7379284 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
7379223 TTTAAATTAT
* * * *
7379233 TATTTAATAATTATTATTATTATAA
1 TATTAAATAATAATAATTATAATAA
7379258 TATTAAATAATAATAATTATAATAA
1 TATTAAATAATAATAATTATAATAA
7379283 TA
1 TA
7379285 AATTTAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TATTAAATAATAATAATTATAATAA
Found at i:7380106 original size:7 final size:7
Alignment explanation
Indices: 7380096--7380128 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
7380086 CGCAAAATAA
7380096 TAATTAT
1 TAATTAT
7380103 TAATTAT
1 TAATTAT
7380110 TAATTAT
1 TAATTAT
*
7380117 T-ACTAT
1 TAATTAT
7380123 TAATTA
1 TAATTA
7380129 AGATATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (7 bp):
TAATTAT
Found at i:7380504 original size:13 final size:13
Alignment explanation
Indices: 7380483--7380568 Score: 58
Period size: 12 Copynumber: 6.9 Consensus size: 13
7380473 ACAATAATTA
*
7380483 TATTAATATTTAT
1 TATTAATATATAT
*
7380496 TATTTATATATAT
1 TATTAATATATAT
*
7380509 AATTAATA-ATAT
1 TATTAATATATAT
* *
7380521 TATTTATTTA-AT
1 TATTAATATATAT
*
7380533 TATAAATAT-TAT
1 TATTAATATATAT
7380545 TA-TAATA-ATAAT
1 TATTAATATAT-AT
7380557 TAATTAAT-TATA
1 T-ATTAATATATA
7380569 AGTATACTTA
Statistics
Matches: 55, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
11 5 0.09
12 24 0.44
13 20 0.36
14 6 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TATTAATATATAT
Found at i:7380550 original size:32 final size:31
Alignment explanation
Indices: 7380479--7380586 Score: 110
Period size: 32 Copynumber: 3.4 Consensus size: 31
7380469 TATAACAATA
* * * *
7380479 ATTATATTAATATTTATTATTTATATATATA
1 ATTATAATAATATTTATTAATTATAAATATT
*
7380510 ATTAATAATATTATTTATTTAATTATAAATATT
1 ATT-ATAATAATATTTA-TTAATTATAAATATT
* *
7380543 ATTATAATAATAATTAATTAATTATAAGTA-T
1 ATTATAATAAT-ATTTATTAATTATAAATATT
7380574 ACTTATAATAATA
1 A-TTATAATAATA
7380587 ATATAAAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
31 6 0.09
32 40 0.62
33 19 0.29
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (31 bp):
ATTATAATAATATTTATTAATTATAAATATT
Found at i:7380795 original size:20 final size:20
Alignment explanation
Indices: 7380772--7380810 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7380762 ATATTATACA
*
7380772 AATAATATT-TAATTTATTAT
1 AATAAAATTATAA-TTATTAT
7380792 AATAAAATTATAATTATTA
1 AATAAAATTATAATTATTA
7380811 GTATTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AATAAAATTATAATTATTAT
Found at i:7380984 original size:23 final size:22
Alignment explanation
Indices: 7380941--7380996 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
7380931 AGAGTTGTAC
7380941 ATTAT-AAATAA-ATTAACGAT
1 ATTATAAAATAATATTAACGAT
*
7380961 AATTTTAAATATAATATTAA-GAT
1 -ATTATAAA-ATAATATTAACGAT
7380984 ATTATAAAATAAT
1 ATTATAAAATAAT
7380997 TATAATAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 9 0.30
22 9 0.30
23 7 0.23
24 5 0.17
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (22 bp):
ATTATAAAATAATATTAACGAT
Found at i:7381584 original size:33 final size:31
Alignment explanation
Indices: 7381528--7381591 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 31
7381518 AATACTGAAT
*
7381528 ATAACTTAATTATAATAATTATTAATTATTA
1 ATAACTTAATTATAATAAATATTAATTATTA
* *
7381559 ATAACTTATTATATAAATAAATATTATTTATTA
1 ATAACTTAAT-TAT-AATAAATATTAATTATTA
7381592 TAAAGTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 9 0.32
32 3 0.11
33 16 0.57
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (31 bp):
ATAACTTAATTATAATAAATATTAATTATTA
Found at i:7381727 original size:30 final size:29
Alignment explanation
Indices: 7381691--7381749 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
7381681 ATACTATAAA
*
7381691 TAGTATTATTATAATT-TTATAATATATGTT
1 TAGTATT-TAATAATTATTATAATAT-TGTT
*
7381721 TAGTATTTAATATTTATTATAATATTGTT
1 TAGTATTTAATAATTATTATAATATTGTT
7381750 AATTATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TAGTATTTAATAATTATTATAATATTGTT
Found at i:7381758 original size:28 final size:28
Alignment explanation
Indices: 7381695--7381759 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
7381685 TATAAATAGT
*
7381695 ATTATT-ATAATTTTATAATATATGTTT
1 ATTATTAATAATTTTATAATATATGTTA
* *
7381722 AGTATTTAATATTTATTATAATAT-TGTTA
1 ATTA-TTAATAATT-TTATAATATATGTTA
7381751 ATTATTAAT
1 ATTATTAAT
7381760 TTTCTATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
27 3 0.10
28 7 0.23
29 12 0.39
30 9 0.29
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (28 bp):
ATTATTAATAATTTTATAATATATGTTA
Found at i:7382312 original size:23 final size:23
Alignment explanation
Indices: 7382282--7382370 Score: 67
Period size: 23 Copynumber: 3.9 Consensus size: 23
7382272 TTTGATAAGG
*
7382282 TTAATAATATTATTATATTATTA
1 TTAATAATATTATAATATTATTA
* * * *
7382305 TTAATAATAATATAAAATAATAA
1 TTAATAATATTATAATATTATTA
*
7382328 TTAATATTAAATTAT-ATATTA--A
1 TTAATA--ATATTATAATATTATTA
*
7382350 TTATATAAAATTATAATATTA
1 TTA-ATAATATTATAATATTA
7382371 AATATATATA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
21 7 0.13
22 10 0.19
23 27 0.51
24 4 0.08
25 5 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TTAATAATATTATAATATTATTA
Found at i:7382351 original size:11 final size:11
Alignment explanation
Indices: 7382325--7382379 Score: 60
Period size: 11 Copynumber: 5.0 Consensus size: 11
7382315 TATAAAATAA
7382325 TAATTA-ATAT
1 TAATTATATAT
7382335 TAAATTATATAT
1 T-AATTATATAT
7382347 TAATTATATA-
1 TAATTATATAT
*
7382357 AAATTATAATAT
1 TAATTAT-ATAT
*
7382369 TAAATATATAT
1 TAATTATATAT
7382380 ATATATAACT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 7 0.18
11 21 0.55
12 10 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAATTATATAT
Found at i:7382368 original size:22 final size:22
Alignment explanation
Indices: 7382293--7382378 Score: 79
Period size: 22 Copynumber: 3.9 Consensus size: 22
7382283 TAATAATATT
*
7382293 ATTATATTATT-ATTA-ATAATA
1 ATTATAATATTAATTATATAA-A
* * *
7382314 ATATAAAATAATAATTAATATTAA
1 AT-TATAATATTAATT-ATATAAA
7382338 ATTAT-ATATTAATTATATAAA
1 ATTATAATATTAATTATATAAA
*
7382359 ATTATAATATTAAATATATA
1 ATTATAATATTAATTATATA
7382379 TATATATAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
21 13 0.25
22 27 0.52
23 5 0.10
24 4 0.08
25 3 0.06
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTATAATATTAATTATATAAA
Found at i:7382532 original size:14 final size:14
Alignment explanation
Indices: 7382510--7382548 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
7382500 TAATACAATA
*
7382510 ATATATTATTAATT
1 ATATATTATAAATT
*
7382524 ATATTTTATAAATT
1 ATATATTATAAATT
*
7382538 ATATATAATAA
1 ATATATTATAA
7382549 CTATTGAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
ATATATTATAAATT
Found at i:7382601 original size:21 final size:21
Alignment explanation
Indices: 7382575--7382614 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7382565 ATAATTTATA
7382575 ATATAAAAAAAATATATTAAT
1 ATATAAAAAAAATATATTAAT
* *
7382596 ATATAAATAAATTATATTA
1 ATATAAAAAAAATATATTA
7382615 TAATTTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATAAAAAAAATATATTAAT
Found at i:7382603 original size:16 final size:16
Alignment explanation
Indices: 7382584--7382638 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
7382574 AATATAAAAA
7382584 AAATATATTAATATAT
1 AAATATATTAATATAT
*
7382600 AAATAAATT-ATAT-T
1 AAATATATTAATATAT
*
7382614 ATA-AT-TTAATATAT
1 AAATATATTAATATAT
*
7382628 AACTATATTAA
1 AAATATATTAA
7382639 ATCATTTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
12 2 0.07
13 5 0.17
14 5 0.17
15 6 0.20
16 12 0.40
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATATATTAATATAT
Found at i:7382697 original size:14 final size:14
Alignment explanation
Indices: 7382667--7382748 Score: 51
Period size: 14 Copynumber: 5.8 Consensus size: 14
7382657 ATATAATTTG
7382667 AATAATAATTAAT-T
1 AATAATAA-TAATAT
7382681 AATAATAATAATAT
1 AATAATAATAATAT
** *
7382695 AATTTTAGTTTAATA-
1 AATAATA--ATAATAT
* *
7382710 AATATTAATTATAT
1 AATAATAATAATAT
* *
7382724 AATAATAGTATTAT
1 AATAATAATAATAT
*
7382738 TATAATAATAA
1 AATAATAATAA
7382749 ATTCAAAATA
Statistics
Matches: 51, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
13 8 0.16
14 32 0.63
15 6 0.12
16 5 0.10
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
AATAATAATAATAT
Found at i:7382707 original size:29 final size:30
Alignment explanation
Indices: 7382667--7382748 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 30
7382657 ATATAATTTG
7382667 AATAATA--ATTAATTAATAATAATAATAT
1 AATAATAGTATTAATTAATAATAATAATAT
** * * *
7382695 AATTTTAGT-TTAATAAATATTAATTATAT
1 AATAATAGTATTAATTAATAATAATAATAT
7382724 AATAATAGTATT-ATT-ATAATAATAA
1 AATAATAGTATTAATTAATAATAATAA
7382749 ATTCAAAATA
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
28 13 0.32
29 26 0.63
30 2 0.05
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (30 bp):
AATAATAGTATTAATTAATAATAATAATAT
Found at i:7382996 original size:21 final size:21
Alignment explanation
Indices: 7382947--7383003 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
7382937 ATTATATCTC
* * *
7382947 AATTATTATTAATAATTATTT
1 AATTATTATTACTAATAATTA
**
7382968 AACAATTATTACTAATAATTA
1 AATTATTATTACTAATAATTA
7382989 AATTATTA-TACTAAT
1 AATTATTATTACTAAT
7383004 TTATTTCTAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 7 0.24
21 22 0.76
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTATTATTACTAATAATTA
Found at i:7383363 original size:14 final size:14
Alignment explanation
Indices: 7383318--7383363 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
7383308 ACAATAATGA
7383318 TAATATTTAATAAT
1 TAATATTTAATAAT
* *
7383332 TCATATTAAATTAAT
1 TAATATTTAA-TAAT
*
7383347 TAATATTTAAGAAT
1 TAATATTTAATAAT
7383361 TAA
1 TAA
7383364 ATATAGATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
TAATATTTAATAAT
Found at i:7384161 original size:181 final size:180
Alignment explanation
Indices: 7383850--7384227 Score: 510
Period size: 181 Copynumber: 2.1 Consensus size: 180
7383840 ACAATTAACC
* * *
7383850 ATTTCAAAAATTAATAAGTAAGAATTTAAAAAATAAATCTGTTTACTGATCAAATTCAAATAGTT
1 ATTTCAAAAATTAATAAGCAAGAATTTAAAAAATAAATCTGTTTACTGAACAAATTCAAATAGCT
* * * *
7383915 ATAACTATTTGAACAATTATTTATTTAAAATCATTATCACCTTTTGCTTTGACAAAAAGCAATTG
66 ACAACTATTTGAACAATTATCTATTGAAAATCATTATCACCTTTGGCTTTGACAAAAAGCAATTG
* *
7383980 TT-TCAGTTCATAA-AAGCTTATCCAAAATAAAATAATACTAATTTCTTAAT
131 TTCT-AGTTCA-AACAAGCTTATCCAAAATAAAATAAAACTAATTTATTAAT
* * * * *
7384030 ATTTCAAAAATTAATAAGCAAGAGTTTAAAAAAATTAATTTTTTTACTGAACAAATTTAAATAGC
1 ATTTCAAAAATTAATAAGCAAGAATTT-AAAAAATAAATCTGTTTACTGAACAAATTCAAATAGC
* * * * *
7384095 TACATCTATTTGAACAATTGTCTATTGAAAATCATTATGACCTTTGGTTTTGTCATAAAA-CAAT
65 TACAACTATTTGAACAATTATCTATTGAAAATCATTATCACCTTTGGCTTTGACA-AAAAGCAAT
*
7384159 TGTTCTAGTTCAAACAAGCTTATTCAAAATAAAATAAAACTAATTTATTAAT
129 TGTTCTAGTTCAAACAAGCTTATCCAAAATAAAATAAAACTAATTTATTAAT
*
7384211 ATTACAAAAATTAATAA
1 ATTTCAAAAATTAATAA
7384228 CTAAGTGATT
Statistics
Matches: 173, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
180 27 0.16
181 141 0.82
182 5 0.03
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.37
Consensus pattern (180 bp):
ATTTCAAAAATTAATAAGCAAGAATTTAAAAAATAAATCTGTTTACTGAACAAATTCAAATAGCT
ACAACTATTTGAACAATTATCTATTGAAAATCATTATCACCTTTGGCTTTGACAAAAAGCAATTG
TTCTAGTTCAAACAAGCTTATCCAAAATAAAATAAAACTAATTTATTAAT
Found at i:7384386 original size:29 final size:28
Alignment explanation
Indices: 7384308--7384410 Score: 85
Period size: 27 Copynumber: 3.8 Consensus size: 28
7384298 AAATCTGATA
*
7384308 TAATAATATT-TTATTATTAATTATTTAT
1 TAATAATATTATAATTATTAATT-TTTAT
7384336 TAATAA-A-TATAA-TATTATATTTTTACT
1 TAATAATATTATAATTATTA-ATTTTTA-T
* *
7384363 TAGA-AATATTATAATTATTAATTTATAA
1 TA-ATAATATTATAATTATTAATTTTTAT
7384391 T-ATAATAATTAT-ATTATTAA
1 TAATAAT-ATTATAATTATTAA
7384411 ATATCAAATT
Statistics
Matches: 63, Mismatches: 3, Indels: 19
0.74 0.04 0.22
Matches are distributed among these distances:
26 11 0.17
27 22 0.35
28 14 0.22
29 11 0.17
30 5 0.08
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (28 bp):
TAATAATATTATAATTATTAATTTTTAT
Found at i:7384424 original size:49 final size:49
Alignment explanation
Indices: 7384319--7384426 Score: 121
Period size: 49 Copynumber: 2.2 Consensus size: 49
7384309 AATAATATTT
* * ** *
7384319 TATTATTAATTATTTATTAATAAATATAATATTATATTTTTACTTAGAAA
1 TATTA-TAATTATTAATTAATAAATATAATATTATATTATTAAATACAAA
*
7384369 TATTATAATTATTAATTTAT-AATATAATAATTATATTATTAAATATCAAA
1 TATTATAATTATTAATTAATAAATATAAT-ATTATATTATTAAATA-CAAA
7384419 T-TTATAAT
1 TATTATAAT
7384427 ATAGTTTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
48 8 0.16
49 33 0.66
50 9 0.18
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (49 bp):
TATTATAATTATTAATTAATAAATATAATATTATATTATTAAATACAAA
Found at i:7384504 original size:16 final size:17
Alignment explanation
Indices: 7384485--7384530 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
7384475 TTAGATAATT
* *
7384485 TAATAATTAT-TATAAG
1 TAATAATTATCAATAAA
7384501 TAAT-ATTATCAATAAA
1 TAATAATTATCAATAAA
*
7384517 TAATAATTAACAAT
1 TAATAATTATCAAT
7384531 TATCTAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 5 0.20
16 12 0.48
17 8 0.32
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.39
Consensus pattern (17 bp):
TAATAATTATCAATAAA
Found at i:7384567 original size:22 final size:22
Alignment explanation
Indices: 7384542--7384585 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7384532 ATCTAAATAT
* * *
7384542 TTATTGTAATTTATATTAATTA
1 TTATAGTAATTAATAATAATTA
7384564 TTATAGTAATTAATAATAATTA
1 TTATAGTAATTAATAATAATTA
7384586 ACATTATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
TTATAGTAATTAATAATAATTA
Found at i:7385508 original size:33 final size:32
Alignment explanation
Indices: 7385458--7385532 Score: 75
Period size: 33 Copynumber: 2.3 Consensus size: 32
7385448 TAAATGAATT
7385458 AATT-ATTATTTAATTAAT-T-TTATAACTTTATAA
1 AATTAATTA-TTAATTAATGTCTTATAA--TTAT-A
*
7385491 AATTAATTATTACTTAATGTCTTATAATTATA
1 AATTAATTATTAATTAATGTCTTATAATTATA
*
7385523 AATTATTTAT
1 AATTAATTAT
7385533 AATAATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
32 10 0.27
33 16 0.43
34 5 0.14
35 6 0.16
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (32 bp):
AATTAATTATTAATTAATGTCTTATAATTATA
Found at i:7385584 original size:50 final size:50
Alignment explanation
Indices: 7385521--7385628 Score: 121
Period size: 50 Copynumber: 2.2 Consensus size: 50
7385511 CTTATAATTA
** * * *
7385521 TAAATTATTTATAATAATTTATTATT-TAATT-ATTATTTAAATAAATACT
1 TAAATTAACTATAATAATTAAATATTATAATTAATAATTTAAAT-AATACT
* *
7385570 TATAATTAACTATAATAATTAAATATTATTATTAATAATTTAAATAATATT
1 TA-AATTAACTATAATAATTAAATATTATAATTAATAATTTAAATAATACT
7385621 TAAATTAA
1 TAAATTAA
7385629 TTAATACTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
49 2 0.04
50 26 0.53
51 11 0.22
52 10 0.20
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (50 bp):
TAAATTAACTATAATAATTAAATATTATAATTAATAATTTAAATAATACT
Found at i:7385597 original size:20 final size:21
Alignment explanation
Indices: 7385578--7385615 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7385568 CTTATAATTA
7385578 ACTA-TAATAA-TTAAATATT
1 ACTATTAATAATTTAAATATT
*
7385597 ATTATTAATAATTTAAATA
1 ACTATTAATAATTTAAATA
7385616 ATATTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 6 0.38
21 7 0.44
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (21 bp):
ACTATTAATAATTTAAATATT
Found at i:7385614 original size:21 final size:20
Alignment explanation
Indices: 7385582--7385620 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
7385572 TAATTAACTA
*
7385582 TAATAATTAAATATTATTAT
1 TAATAATTAAATAATATTAT
7385602 TAATAATTTAAATAATATT
1 TAATAA-TTAAATAATATT
7385621 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TAATAATTAAATAATATTAT
Found at i:7385629 original size:21 final size:21
Alignment explanation
Indices: 7385583--7385630 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
7385573 AATTAACTAT
* *
7385583 AATAA-TTAAATATTATTATT
1 AATAATTTAAATAATATTATA
7385603 AATAATTTAAATAATATT-TA
1 AATAATTTAAATAATATTATA
7385623 AATTAATT
1 AA-TAATT
7385631 AATACTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AATAATTTAAATAATATTATA
Found at i:7385726 original size:36 final size:34
Alignment explanation
Indices: 7385659--7385726 Score: 82
Period size: 36 Copynumber: 1.9 Consensus size: 34
7385649 GAATAATAAA
* *
7385659 TTATAAATTATTACTAATATGATTATTAATATAG
1 TTATAAATTATTAATAATATGATTATAAATATAG
**
7385693 TTATAAATTATATATATAATATTTTTATAAATAT
1 TTATAAATTAT-TA-ATAATATGATTATAAATAT
7385727 TATAAACTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 11 0.39
35 2 0.07
36 15 0.54
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (34 bp):
TTATAAATTATTAATAATATGATTATAAATATAG
Found at i:7385819 original size:27 final size:28
Alignment explanation
Indices: 7385767--7385825 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
7385757 TAAAGTTAAT
*
7385767 AATTCATTTAATTATTATATATATTACA
1 AATTCATTTAATTATTATATACATTACA
* *
7385795 AATTCA-TTAATTGTTATA-ACCATTATA
1 AATTCATTTAATTATTATATA-CATTACA
7385822 AATT
1 AATT
7385826 AAAGTAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.04
27 20 0.74
28 6 0.22
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.47
Consensus pattern (28 bp):
AATTCATTTAATTATTATATACATTACA
Found at i:7385887 original size:17 final size:17
Alignment explanation
Indices: 7385851--7385920 Score: 61
Period size: 17 Copynumber: 3.9 Consensus size: 17
7385841 TTATAAATAA
* *
7385851 TAAT-TATATTATATAC
1 TAATATATATTATTTAT
7385867 TAATATATATTATTTAT
1 TAATATATATTATTTAT
7385884 TAATAATTAGTATTTATTTAT
1 TAAT-A-TA-TA-TTATTTAT
* *
7385905 TAATATTTAATATTTA
1 TAATATATATTATTTA
7385921 ATAAAATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
16 4 0.09
17 20 0.44
18 3 0.07
19 3 0.07
20 3 0.07
21 12 0.27
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (17 bp):
TAATATATATTATTTAT
Found at i:7385900 original size:21 final size:21
Alignment explanation
Indices: 7385871--7385920 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
7385861 ATATACTAAT
7385871 ATATATTATTTATTAATAATTA
1 ATAT-TTATTTATTAATAATTA
* *
7385893 GTATTTATTTATTAATATTTA
1 ATATTTATTTATTAATAATTA
7385914 ATATTTA
1 ATATTTA
7385921 ATAAAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
ATATTTATTTATTAATAATTA
Found at i:7385993 original size:31 final size:27
Alignment explanation
Indices: 7385940--7386008 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 27
7385930 TAATAATATA
* *
7385940 AATATATTATAATTAATGAATATAATTT
1 AATATATTATAATTAATAAATAT-AGTT
7385968 AATATATTATAAGGTTTAATAAATATAGTT
1 AATATATTATAA---TTAATAAATATAGTT
7385998 AAT-TATTATAA
1 AATATATTATAA
7386009 ATATATATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
28 12 0.33
29 8 0.22
30 6 0.17
31 10 0.28
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (27 bp):
AATATATTATAATTAATAAATATAGTT
Found at i:7386014 original size:21 final size:21
Alignment explanation
Indices: 7385984--7386029 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
7385974 TTATAAGGTT
*
7385984 TAATAAATATA-GTT-AATTA
1 TAATAAATATATATTAAATTA
*
7386003 TTATAAATATATATTAAATTA
1 TAATAAATATATATTAAATTA
7386024 TAATAA
1 TAATAA
7386030 TATTAACATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 10 0.45
20 2 0.09
21 10 0.45
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
TAATAAATATATATTAAATTA
Found at i:7386025 original size:18 final size:17
Alignment explanation
Indices: 7386002--7386041 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
7385992 ATAGTTAATT
7386002 ATTATAAATATATATTAA-
1 ATTAT-AATA-ATATTAAC
7386020 ATTATAATAATATTAAC
1 ATTATAATAATATTAAC
7386037 ATTAT
1 ATTAT
7386042 TAGCTTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 9 0.43
18 5 0.24
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTATAATAATATTAAC
Found at i:7386140 original size:15 final size:15
Alignment explanation
Indices: 7386120--7386151 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7386110 TATTCAATAC
*
7386120 TTTTAATTTAATTAA
1 TTTTAATTAAATTAA
7386135 TTTTAATTAAATTAA
1 TTTTAATTAAATTAA
7386150 TT
1 TT
7386152 CTATTCATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTAATTAAATTAA
Found at i:7387212 original size:36 final size:36
Alignment explanation
Indices: 7387112--7387244 Score: 112
Period size: 36 Copynumber: 3.7 Consensus size: 36
7387102 TTCGAATAAA
*
7387112 ATTAATATATTGAAATATTAATTAATAAT-TTATTAAT
1 ATTAAT-TATT-AAATAATAATTAATAATATTATTAAT
* * * * * *
7387149 ATTAATAACTATATTATCAATT-CTAATATTATTGAT
1 ATTAATTATTAAATAAT-AATTAATAATATTATTAAT
*
7387185 ATTAATTATTAAATAATAATTATTAATATGT-TTAAT
1 ATTAATTATTAAATAATAATTAATAATAT-TATTAAT
*
7387221 AATTAATTATTAAA-ACTAATTAAT
1 -ATTAATTATTAAATAATAATTAAT
7387245 GTTTGAATTT
Statistics
Matches: 76, Mismatches: 15, Indels: 11
0.75 0.15 0.11
Matches are distributed among these distances:
35 12 0.16
36 44 0.58
37 20 0.26
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.47
Consensus pattern (36 bp):
ATTAATTATTAAATAATAATTAATAATATTATTAAT
Found at i:7387242 original size:17 final size:16
Alignment explanation
Indices: 7387218--7387282 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
7387208 TAATATGTTT
7387218 AATAATTAATTATTAA
1 AATAATTAATTATTAA
*
7387234 AACTAATTAATGT-TTGA
1 AA-TAATTAAT-TATTAA
* *
7387251 ATTTATTAATTAATTAA
1 AATAATTAATT-ATTAA
7387268 AATAATTAACTTATT
1 AATAATTAA-TTATT
7387283 TAATATTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
15 1 0.03
16 9 0.24
17 25 0.66
18 3 0.08
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (16 bp):
AATAATTAATTATTAA
Found at i:7387243 original size:33 final size:34
Alignment explanation
Indices: 7387180--7387276 Score: 96
Period size: 33 Copynumber: 2.9 Consensus size: 34
7387170 TCTAATATTA
* *
7387180 TTGATATTAATT-ATTAAATAATAATTATTAATATGT
1 TTGA-ATTAATTAATTAATTAA-AATAATTAA-ATGT
7387216 TT-AA-TAATTAATT-ATTAAAACTAATT-AATGT
1 TTGAATTAATTAATTAATTAAAA-TAATTAAATGT
*
7387247 TTGAATTTATTAATTAATTAAAATAATTAA
1 TTGAATTAATTAATTAATTAAAATAATTAA
7387277 CTTATTTAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
31 6 0.12
32 5 0.10
33 26 0.50
34 12 0.23
35 1 0.02
36 2 0.04
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (34 bp):
TTGAATTAATTAATTAATTAAAATAATTAAATGT
Found at i:7392970 original size:33 final size:33
Alignment explanation
Indices: 7392928--7392998 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
7392918 AATTGACATT
* * **
7392928 TGCATAGCATGCATTGCATTTCTGAATGTTTAG
1 TGCATAGCATACATTGCATTTATGAATGCCTAG
7392961 TGCATAGCATACATTGCATTTATGAATGCCTAG
1 TGCATAGCATACATTGCATTTATGAATGCCTAG
7392994 TGCAT
1 TGCAT
7392999 GAATTTAAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (33 bp):
TGCATAGCATACATTGCATTTATGAATGCCTAG
Found at i:7393429 original size:88 final size:88
Alignment explanation
Indices: 7393205--7393444 Score: 281
Period size: 88 Copynumber: 2.7 Consensus size: 88
7393195 GTAGAGTAAT
** *
7393205 TTTATTTTTCTAAAGTCGTTAAGCCTCTGTTTAGAGGAGTTTTATTTA-TTTTCAAAAGTTG-TG
1 TTTATTTTTC-AAAGTCGTTAAGCCTCTGTTTAGAGGAGCCTTATTTATTTTTAAAAAGTTGTTG
* *
7393268 AAGCCTCTATTTAGAAAAGCTTTA
65 AAGCCTCTATTTAGAAAAGCCTCA
* * * * *
7393292 TTTATTTTTCAAAGTTGTTAAGCCTTTGTTTAGAAGAACCTTATTTATTTTTTAAAAGTTGTTGA
1 TTTATTTTTCAAAGTCGTTAAGCCTCTGTTTAGAGGAGCCTTATTTATTTTTAAAAAGTTGTTGA
* *
7393357 A-CCTCTGTTTAGATGAA-CCTCA
66 AGCCTCTATTTAGA-AAAGCCTCA
* * **
7393379 TTTATTATTTCAGAGTCGTTGAGCCTCTACTTAGAGGAGCCTTATTTATTTTTAAAAAGTTGTTG
1 TTTATT-TTTCAAAGTCGTTAAGCCTCTGTTTAGAGGAGCCTTATTTATTTTTAAAAAGTTGTTG
7393444 A
65 A
7393445 GCTTATGGTT
Statistics
Matches: 129, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
86 31 0.24
87 42 0.33
88 56 0.43
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (88 bp):
TTTATTTTTCAAAGTCGTTAAGCCTCTGTTTAGAGGAGCCTTATTTATTTTTAAAAAGTTGTTGA
AGCCTCTATTTAGAAAAGCCTCA
Found at i:7393444 original size:44 final size:44
Alignment explanation
Indices: 7393205--7393491 Score: 253
Period size: 44 Copynumber: 6.6 Consensus size: 44
7393195 GTAGAGTAAT
* * * * **
7393205 TTTATTTTTCTAAAGTCGTTAAGCCTCTGTTTAGAGGAGTTTTA
1 TTTATTTTTCAAAAGTTGTTGAGCCTCTGTTTAGAAGAGCCTTA
* * *
7393249 TTTA-TTTTCAAAAGTTG-TGAAGCCTCTATTTAGAAAAGCTTTA
1 TTTATTTTTCAAAAGTTGTTG-AGCCTCTGTTTAGAAGAGCCTTA
* * *
7393292 TTTATTTTTC-AAAGTTGTTAAGCCTTTGTTTAGAAGAACCTTA
1 TTTATTTTTCAAAAGTTGTTGAGCCTCTGTTTAGAAGAGCCTTA
* * * * *
7393335 TTTATTTTTTAAAAGTTGTTGAACCTCTGTTTAGATGAACCTCA
1 TTTATTTTTCAAAAGTTGTTGAGCCTCTGTTTAGAAGAGCCTTA
* * ** *
7393379 TTTATTATTTC-AGAGTCGTTGAGCCTCTACTTAGAGGAGCCTTA
1 TTTATT-TTTCAAAAGTTGTTGAGCCTCTGTTTAGAAGAGCCTTA
* * * * * *
7393423 TTTATTTTTAAAAAGTTGTTGAGCTTATGGTTA-AATGAGCTTTT
1 TTTATTTTTCAAAAGTTGTTGAGCCTCTGTTTAGAA-GAGCCTTA
7393467 TTTA-TTTTCAAAAGTTGTTGAGCCT
1 TTTATTTTTCAAAAGTTGTTGAGCCT
7393492 TATCTATTTT
Statistics
Matches: 196, Mismatches: 40, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
42 1 0.01
43 91 0.46
44 101 0.52
45 3 0.02
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.45
Consensus pattern (44 bp):
TTTATTTTTCAAAAGTTGTTGAGCCTCTGTTTAGAAGAGCCTTA
Found at i:7393639 original size:17 final size:17
Alignment explanation
Indices: 7393619--7393651 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7393609 AAAAAAAAGG
*
7393619 AGAGAAAAAGGAAAAAA
1 AGAGAAAAAAGAAAAAA
7393636 AGAGAAAAAAGAAAAA
1 AGAGAAAAAAGAAAAA
7393652 TGTATCGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
AGAGAAAAAAGAAAAAA
Found at i:7394079 original size:13 final size:14
Alignment explanation
Indices: 7394050--7394082 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7394040 ATTTTTAAGA
7394050 TTTTTTTTGAAAGT
1 TTTTTTTTGAAAGT
*
7394064 TTTTTTTTGGAA-T
1 TTTTTTTTGAAAGT
7394077 TTTTTT
1 TTTTTT
7394083 GGAAAATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (14 bp):
TTTTTTTTGAAAGT
Found at i:7394713 original size:26 final size:25
Alignment explanation
Indices: 7394649--7394712 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
7394639 ATAATTATCC
7394649 AATGATAAAATTTTTA-AAAATTTTA
1 AATGAT-AAATTTTTATAAAATTTTA
* *
7394674 AATGGTAAATTTTTATAAAATTTTT
1 AATGATAAATTTTTATAAAATTTTA
**
7394699 GGTGATAAATTTTT
1 AATGATAAATTTTT
7394713 TCTAAATTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 9 0.27
25 24 0.73
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (25 bp):
AATGATAAATTTTTATAAAATTTTA
Found at i:7402527 original size:29 final size:29
Alignment explanation
Indices: 7402494--7402552 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
7402484 TTCCTTGTAA
7402494 AAGTAATAATGCTTGTAATGACCAATAAT
1 AAGTAATAATGCTTGTAATGACCAATAAT
*
7402523 AAGTAATAATGCTTGTGATGACCAATAAT
1 AAGTAATAATGCTTGTAATGACCAATAAT
7402552 A
1 A
7402553 CTTGAATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (29 bp):
AAGTAATAATGCTTGTAATGACCAATAAT
Found at i:7406052 original size:13 final size:13
Alignment explanation
Indices: 7406034--7406059 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7406024 AATTATATTT
7406034 ATTTATATTTATA
1 ATTTATATTTATA
7406047 ATTTATATTTATA
1 ATTTATATTTATA
7406060 TTAAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTATATTTATA
Found at i:7407529 original size:2 final size:2
Alignment explanation
Indices: 7407522--7407550 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7407512 TCACTTTTTC
7407522 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7407551 TTAAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7408059 original size:2 final size:2
Alignment explanation
Indices: 7408052--7408081 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7408042 TGTTTTTAGA
*
7408052 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7408082 GTGTGTGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:7408156 original size:26 final size:26
Alignment explanation
Indices: 7408127--7408180 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
7408117 TTATAAGTAA
7408127 TTTGTTTTTCATACTATGTTTTTTTG
1 TTTGTTTTTCATACTATGTTTTTTTG
* *
7408153 TTTGTTTTTCATATTGTGTTTTTTTG
1 TTTGTTTTTCATACTATGTTTTTTTG
7408179 TT
1 TT
7408181 GGGATTGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.09, C:0.06, G:0.13, T:0.72
Consensus pattern (26 bp):
TTTGTTTTTCATACTATGTTTTTTTG
Found at i:7412381 original size:2 final size:2
Alignment explanation
Indices: 7412374--7412405 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7412364 TTGTAATGTA
7412374 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7412406 TAGATTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7413356 original size:23 final size:24
Alignment explanation
Indices: 7413330--7413387 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 24
7413320 CTTAAATATT
7413330 TTCAAAATTATTATT-ATTTTTAA
1 TTCAAAATTATTATTCATTTTTAA
* * *
7413353 TTCAAAATTTTTTTTCATTTTTAG
1 TTCAAAATTATTATTCATTTTTAA
7413377 TTCAAGAATTA
1 TTCAA-AATTA
7413388 AAATTAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 13 0.45
24 12 0.41
25 4 0.14
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.55
Consensus pattern (24 bp):
TTCAAAATTATTATTCATTTTTAA
Found at i:7413392 original size:6 final size:6
Alignment explanation
Indices: 7413383--7413456 Score: 51
Period size: 6 Copynumber: 11.3 Consensus size: 6
7413373 TTAGTTCAAG
* *
7413383 AATTAA AATTAA AATAAA TAATAAA AATAATAA AATATAAA AACTTAA
1 AATTAA AATTAA AATTAA -AATTAA AAT--TAA AAT-T-AA AA-TTAA
*
7413431 AA-TGA AATTAA AATTAAA AATTAA AA
1 AATTAA AATTAA AATT-AA AATTAA AA
7413457 ATTACTGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
5 4 0.07
6 24 0.42
7 18 0.32
8 10 0.18
9 1 0.02
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (6 bp):
AATTAA
Found at i:7417486 original size:14 final size:13
Alignment explanation
Indices: 7417469--7417510 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
7417459 TTTATTATGA
7417469 TTATATTAATTTAT
1 TTATATT-ATTTAT
7417483 TTATATTATTTA-
1 TTATATTATTTAT
**
7417495 GAATATTATTTAT
1 TTATATTATTTAT
7417508 TTA
1 TTA
7417511 AATAATATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 10 0.43
13 6 0.26
14 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTATATTATTTAT
Found at i:7418441 original size:21 final size:21
Alignment explanation
Indices: 7418417--7418472 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
7418407 ATTGTTAATA
7418417 ATTAACAATAAATAATAATTT
1 ATTAACAATAAATAATAATTT
* *
7418438 ATTAA-ATTTAATAAATAATTT
1 ATTAACAATAAAT-AATAATTT
*
7418459 A-TAAC-ATAATTAAT
1 ATTAACAATAAATAAT
7418473 TATAATTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
19 3 0.11
20 11 0.39
21 14 0.50
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTAACAATAAATAATAATTT
Found at i:7418509 original size:41 final size:42
Alignment explanation
Indices: 7418417--7418511 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 42
7418407 ATTGTTAATA
*
7418417 ATTAACAATAAATAATAATTTATTAAATTTAATAAATAATTT
1 ATTAATAATAAATAATAATTTATTAAATTTAATAAATAATTT
* * * * *
7418459 ATAACATAATTAATTATAA-TTATT-ATTTTAATATATAATTCT
1 ATTA-ATAATAAATAATAATTTATTAAATTTAATAAATAATT-T
7418501 ATTAATAATAA
1 ATTAATAATAA
7418512 CAATTAAAGT
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
41 20 0.47
42 12 0.28
43 11 0.26
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (42 bp):
ATTAATAATAAATAATAATTTATTAAATTTAATAAATAATTT
Found at i:7418538 original size:12 final size:12
Alignment explanation
Indices: 7418521--7418613 Score: 57
Period size: 12 Copynumber: 7.7 Consensus size: 12
7418511 ACAATTAAAG
*
7418521 TTAATAATTATT
1 TTAATAATTATA
7418533 TTAATAATTTATA
1 TTAATAA-TTATA
* * *
7418546 ATACTAATAATA
1 TTAATAATTATA
*
7418558 TT-ATAATTATC
1 TTAATAATTATA
7418569 TTAATAATTACTA
1 TTAATAATTA-TA
* * *
7418582 ATAATGATTATC
1 TTAATAATTATA
7418594 TT--TAATTAATA
1 TTAATAATT-ATA
7418605 TTATATAAT
1 TTA-ATAAT
7418614 GGAATTTAAT
Statistics
Matches: 59, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
10 4 0.07
11 12 0.20
12 21 0.36
13 18 0.31
14 4 0.07
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (12 bp):
TTAATAATTATA
Found at i:7418603 original size:30 final size:28
Alignment explanation
Indices: 7418522--7418604 Score: 78
Period size: 30 Copynumber: 2.9 Consensus size: 28
7418512 CAATTAAAGT
* *
7418522 TAATAATTATTTTAA-TAATTTATAATAC
1 TAATAA-TATTATAATTAATTAATAATAC
*
7418550 TAATAATATTATAATTATCTTAATAATTAC
1 TAATAATATTATAATTA-ATTAATAA-TAC
**
7418580 TAATAATGATTATCTTTAATTAATA
1 TAATAAT-ATTATAATTAATTAATA
7418605 TTATATAATG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
27 7 0.16
28 8 0.18
29 6 0.13
30 16 0.36
31 8 0.18
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.48
Consensus pattern (28 bp):
TAATAATATTATAATTAATTAATAATAC
Found at i:7418815 original size:22 final size:22
Alignment explanation
Indices: 7418789--7418833 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7418779 TATGAGTGGA
**
7418789 AATATAGATTATCTATATTTAT
1 AATATAGATTATAAATATTTAT
*
7418811 AATATAGTTTATAAATATTTAT
1 AATATAGATTATAAATATTTAT
7418833 A
1 A
7418834 TTGTAATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
AATATAGATTATAAATATTTAT
Found at i:7420459 original size:30 final size:29
Alignment explanation
Indices: 7420399--7420455 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
7420389 TTAACATTTG
*
7420399 AAAAATTAAAAATAATTGTTAATTGTATT
1 AAAAATTAAAAATAATTGTTAATAGTATT
7420428 AAAAATTAATAAAT-A-TGTTAATAG-ATT
1 AAAAATTAA-AAATAATTGTTAATAGTATT
7420455 A
1 A
7420456 TTAATTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 4 0.15
28 8 0.31
29 10 0.38
30 4 0.15
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (29 bp):
AAAAATTAAAAATAATTGTTAATAGTATT
Found at i:7420872 original size:17 final size:17
Alignment explanation
Indices: 7420850--7420882 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7420840 TTATCAAATA
7420850 ATTTATATAA-ATTATTT
1 ATTTAT-TAATATTATTT
7420867 ATTTATTAATATTATT
1 ATTTATTAATATTATT
7420883 AATTAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTATTAATATTATTT
Found at i:7421119 original size:28 final size:26
Alignment explanation
Indices: 7421090--7421144 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
7421080 ATATGTTATT
*
7421090 AATATTAATAAAAATTATATTTAATTTTA
1 AATA-TAAT-AAAATT-TATATAATTTTA
7421119 AATATAATAAAATTTATATAATTTTA
1 AATATAATAAAATTTATATAATTTTA
7421145 TACTAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 11 0.44
27 6 0.24
28 4 0.16
29 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (26 bp):
AATATAATAAAATTTATATAATTTTA
Found at i:7421309 original size:24 final size:24
Alignment explanation
Indices: 7421260--7421319 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
7421250 AATAAGACCA
*
7421260 TATAATTAATATAATAAATTGTAT
1 TATAATTAATATAATAAATTGAAT
7421284 TATAATTAATATAATAAATCT-AAT
1 TATAATTAATATAATAAAT-TGAAT
*
7421308 TATTAACTAATA
1 TA-TAATTAATA
7421320 ATATTAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 23 0.72
25 9 0.28
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (24 bp):
TATAATTAATATAATAAATTGAAT
Found at i:7421370 original size:22 final size:22
Alignment explanation
Indices: 7421327--7421378 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
7421317 ATAATATTAA
* *
7421327 TAATATTATAATTAATTTAATT
1 TAATATAATAATTAATTCAATT
7421349 TAATATAATAATT-ATATCAATT
1 TAATATAATAATTAAT-TCAATT
*
7421371 TATTATAA
1 TAATATAA
7421379 AAACATATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 2 0.08
22 24 0.92
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
TAATATAATAATTAATTCAATT
Found at i:7422039 original size:8 final size:9
Alignment explanation
Indices: 7422026--7422075 Score: 52
Period size: 8 Copynumber: 5.8 Consensus size: 9
7422016 TAATCAAATA
7422026 AATATT-AT
1 AATATTAAT
7422034 AATATTAAT
1 AATATTAAT
*
7422043 ATTATTAAT
1 AATATTAAT
*
7422052 AA-ATTGAT
1 AATATTAAT
7422060 AATA-TAAT
1 AATATTAAT
7422068 AATTATTA
1 AA-TATTA
7422076 TTATTAAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
8 18 0.53
9 14 0.41
10 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (9 bp):
AATATTAAT
Found at i:7422095 original size:29 final size:27
Alignment explanation
Indices: 7422033--7422097 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
7422023 ATAAATATTA
*
7422033 TAATATTAATATTATTAATAAATTGAT
1 TAATAATAATATTATTAATAAATTGAT
* * *
7422060 AATATAATAATTATTATTATTAAATTTGTT
1 TA-ATAATAA-TATTATTAATAAA-TTGAT
7422090 TAATAATA
1 TAATAATA
7422098 CTAATTCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
27 1 0.03
28 6 0.20
29 18 0.60
30 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (27 bp):
TAATAATAATATTATTAATAAATTGAT
Found at i:7422270 original size:14 final size:14
Alignment explanation
Indices: 7422236--7422274 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
7422226 AAATAATCAA
7422236 AATAAT-ATTAATT
1 AATAATAATTAATT
7422249 AATAAATAATTAATT
1 AAT-AATAATTAATT
*
7422264 AGTAATAATTA
1 AATAATAATTA
7422275 GTATAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 3 0.13
14 11 0.48
15 9 0.39
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (14 bp):
AATAATAATTAATT
Found at i:7422285 original size:35 final size:35
Alignment explanation
Indices: 7422245--7422333 Score: 105
Period size: 32 Copynumber: 2.7 Consensus size: 35
7422235 AAATAATATT
7422245 AATTAATAAATAATTAATTAGTAATAATTAGTATA
1 AATTAATAAATAATTAATTAGTAATAATTAGTATA
* * * *
7422280 AATTAAAAAATAATT-ATTAGT-TTAATTATTCTA
1 AATTAATAAATAATTAATTAGTAATAATTAGTATA
*
7422313 AA-TAATAAACAATTAA-TAGTA
1 AATTAATAAATAATTAATTAGTA
7422334 TTAGTTTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
32 14 0.30
33 12 0.26
34 6 0.13
35 14 0.30
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.39
Consensus pattern (35 bp):
AATTAATAAATAATTAATTAGTAATAATTAGTATA
Found at i:7422540 original size:21 final size:22
Alignment explanation
Indices: 7422516--7422568 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
7422506 AACAATTGTT
7422516 TAATTGT-TATAACTAAAAATA
1 TAATTGTATATAACTAAAAATA
* * *
7422537 TAA-TGTATTTAATTAAAATTA
1 TAATTGTATATAACTAAAAATA
7422558 TAATTAGTATA
1 TAATT-GTATA
7422569 ATTATTTAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 3 0.12
21 17 0.68
22 1 0.04
23 4 0.16
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (22 bp):
TAATTGTATATAACTAAAAATA
Found at i:7422570 original size:21 final size:21
Alignment explanation
Indices: 7422523--7422572 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7422513 GTTTAATTGT
*
7422523 TATAACTAAAAATATAATGTA
1 TATAATTAAAAATATAATGTA
* *
7422544 TTTAATTAAAATTATAAT-TA
1 TATAATTAAAAATATAATGTA
7422564 GTATAATTA
1 -TATAATTA
7422573 TTTAACTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (21 bp):
TATAATTAAAAATATAATGTA
Found at i:7423039 original size:23 final size:24
Alignment explanation
Indices: 7422980--7423039 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 24
7422970 ATATTGAATC
7422980 AATAATTTATTAGTCAATAATTAA
1 AATAATTTATTAGTCAATAATTAA
7423004 AAT-ATTTAAATTA-T-AATAATTATA
1 AATAATTT--ATTAGTCAATAATTA-A
*
7423028 ATTAATTTATTA
1 AATAATTTATTA
7423040 AGTTATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
23 16 0.52
24 7 0.23
25 8 0.26
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
AATAATTTATTAGTCAATAATTAA
Found at i:7423544 original size:13 final size:13
Alignment explanation
Indices: 7423496--7423545 Score: 61
Period size: 12 Copynumber: 4.1 Consensus size: 13
7423486 TAAGTAGGAG
7423496 ATTTA-AAAT-AT
1 ATTTATAAATAAT
7423507 ATTTATAAATAA-
1 ATTTATAAATAAT
* *
7423519 ATATATAACTAAT
1 ATTTATAAATAAT
7423532 ATTTATAAATAAT
1 ATTTATAAATAAT
7423545 A
1 A
7423546 ACTTATATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 5 0.16
12 14 0.44
13 13 0.41
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (13 bp):
ATTTATAAATAAT
Found at i:7423548 original size:20 final size:21
Alignment explanation
Indices: 7423515--7423554 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7423505 ATATTTATAA
7423515 ATAAATATATAACTAATATTT
1 ATAAATATATAACTAATATTT
*
7423536 ATAAATA-ATAACTTATATT
1 ATAAATATATAACTAATATT
7423555 AGTTATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (21 bp):
ATAAATATATAACTAATATTT
Found at i:7423699 original size:25 final size:25
Alignment explanation
Indices: 7423651--7423752 Score: 66
Period size: 25 Copynumber: 4.0 Consensus size: 25
7423641 TAACTTATTA
* * *
7423651 ATTA-TATATAATAATCTATTTAAT
1 ATTATTATATAATATTATATATAAT
7423675 ATTATTATATAATATTATATATAAT
1 ATTATTATATAATATTATATATAAT
* * * *
7423700 TTTAATA-ATATTAATTATATAGTTAT
1 ATTATTATATAAT-ATTATATA-TAAT
*
7423726 ATTATAACTACTAATA-TAGTATATAAT
1 ATTATTA-TA-TAATATTA-TATATAAT
7423753 TATATACTAA
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
24 8 0.14
25 30 0.51
26 7 0.12
27 5 0.08
28 6 0.10
29 3 0.05
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (25 bp):
ATTATTATATAATATTATATATAAT
Found at i:7423907 original size:39 final size:38
Alignment explanation
Indices: 7423834--7423909 Score: 91
Period size: 39 Copynumber: 2.0 Consensus size: 38
7423824 AAACAAATTA
* * **
7423834 TAATAATATAAATTATTATTTATACTATTTATTTATTT
1 TAATAATATAAATTATCATTTATAATATAAATTTATTT
7423872 TAATAATATTATAA-TATCATTTATAATATAAATTTATT
1 TAATAATA-TA-AATTATCATTTATAATATAAATTTATT
7423910 AAAATTCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 8 0.25
39 22 0.69
40 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (38 bp):
TAATAATATAAATTATCATTTATAATATAAATTTATTT
Found at i:7423951 original size:23 final size:22
Alignment explanation
Indices: 7423909--7423951 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7423899 ATAAATTTAT
*
7423909 TAAAATTCTAAAAATTAATAAA
1 TAAAATTCTAAAAATAAATAAA
*
7423931 TAAAATTTTAAAAAATAAATA
1 TAAAATTCT-AAAAATAAATA
7423952 TGTTTTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATTCTAAAAATAAATAAA
Found at i:7424212 original size:181 final size:179
Alignment explanation
Indices: 7423894--7424821 Score: 641
Period size: 181 Copynumber: 5.2 Consensus size: 179
7423884 AATATCATTT
* * * *
7423894 ATAATATAAATTTATTAA-AATTCTAAAAATTAATAAATAAAA-TTTTAAAAAATAAATATGTTT
1 ATAATATTAATTTATTAATATTTCT-AAAATTAATAAGTAAAAGATTTAAAAAAT-AA-AT-TTT
* * * *
7423957 TTTGAAC-AC-A-TTC-AACAGTTATGAATATTTGAACAATTATCCTATTTCAAATCGTTACGAT
62 TTT-AACGACAAGTTCAAATAGTTATGACTATTTGAACAATTAT-ATATTTCAAATCGTTATGAT
** * * * * *
7424018 AATTTATTTTGTCATAAACCAATTATTTTTATTTATACAAGCTTATTCGAACTAAA
125 CTTTTATTTTGTCATAAAACAATTGTTTCTATTCATACAAGATTATTCGAA-TAAA
* *
7424074 ATAATATTTATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAATAATAAATTTTTTTA
1 ATAATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTTTTTA
* *
7424139 ACGAGCAAGTTCAAATAGTTATTACTATTTGAACAATTATATATTTCAAATCTTTATGATCTTTT
66 ACGA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCGTTATGATCTTTT
* * * *
7424204 CTTTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTTGAAATAAA
130 ATTTTGTCATAAAACAATTGTTTCTATTCATACAAGATTATTCG-AATAAA
* * * * * *
7424255 ATAATACTAATTTATTATTA-TTCTTAAAATTAATAAGTTAGAGATTTAAAAAATAAATATGTTT
1 ATAATATTAATTTATTAATATTTC-TAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTTTTT
* * * * * ** *
7424319 ACCGAACAAGTTTAAATAGTCATGCCCATTTGAACTGTTATTTATTTCAAATCGTTATGA-CATT
65 AACG-ACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCGTTATGATC-TT
* * * * * *
7424383 TTGTTTTATTAGAAAATAATTGTTTCTATTCATACAAAATTATTCAGAATAAA
128 TTATTTTGTCATAAAACAATTGTTTCTATTCATACAAGATTATTC-GAATAAA
* * * *
7424436 ATAATATCAATTTATTACTTTTTCAAAAATTAATAAG-----GATTT-AAAAATAAATGTGTTTT
1 ATAATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAAAAATAAAT-T-TTTT
* * * * * * ** * *
7424495 CTAA-AAC-AGTTTAAATAGTTAAGACTATTAGAACAATTATGTATTCCAAATTATTCTGATATT
64 -TAACGACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCGTTATGATCTT
* ** * * * * * *
7424558 TTGTTAAGT-AAAAAAAAATTGTTTC-AGTTCATACATGCTTATTCAAAATATA
128 TTATTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGATTATTC-GAATAAA
* * * ** * *
7424610 GTAATACTAATTTATTAAAATTTAAAAAATTAATAAG---AA-ATTT-TAAAA-AAATTTATTTA
1 ATAATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTTTTTA
* * * * * * * * *
7424669 CCTAATAAGTTCAAATAATTATGATTATTTGAATAATTATCTATTTAAAATCGTTAT-AACATTT
66 AC-GACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCGTTATGATC-TTT
* * * * * *
7424733 TATTTTATCATAAAACAATTGTTTCAATACATAAAAG-TTTTTCCAAAATAAA
129 TATTTTGTCATAAAACAATTGTTTCTATTCATACAAGATTATT-C-GAATAAA
* * * *
7424785 ATAA-ATCATTTTATTAATATTTCAAAAATTAAGAAGT
1 ATAATATTAATTTATTAATATTTCTAAAATTAATAAGT
7424822 TGGGGTTTAA
Statistics
Matches: 596, Mismatches: 124, Indels: 61
0.76 0.16 0.08
Matches are distributed among these distances:
171 2 0.00
172 3 0.01
173 5 0.01
174 143 0.24
175 98 0.16
176 8 0.01
177 6 0.01
178 9 0.02
179 3 0.01
180 39 0.07
181 249 0.42
182 31 0.05
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (179 bp):
ATAATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTTTTTA
ACGACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCGTTATGATCTTTTA
TTTTGTCATAAAACAATTGTTTCTATTCATACAAGATTATTCGAATAAA
Found at i:7424911 original size:14 final size:14
Alignment explanation
Indices: 7424892--7424924 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7424882 TAGTTTAAAA
7424892 TAATATAATATTAT
1 TAATATAATATTAT
*
7424906 TAATATTATATTAT
1 TAATATAATATTAT
7424920 TAATA
1 TAATA
7424925 AATCATAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATAATATTAT
Found at i:7424985 original size:18 final size:18
Alignment explanation
Indices: 7424962--7424997 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7424952 TAATTTATAA
*
7424962 TATAAATTATAAATTAAT
1 TATAAAATATAAATTAAT
*
7424980 TATAAAATATTAATTAAT
1 TATAAAATATAAATTAAT
7424998 AATTATCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TATAAAATATAAATTAAT
Found at i:7425062 original size:27 final size:26
Alignment explanation
Indices: 7425023--7425073 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
7425013 AATTGTTGCT
7425023 TATAATTTATATTAAACTATAAATTA
1 TATAATTTATATTAAACTATAAATTA
*
7425049 TATAATATTATATTATACTATAAAT
1 TATAAT-TTATATTAAACTATAAAT
7425074 CAAATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (26 bp):
TATAATTTATATTAAACTATAAATTA
Found at i:7425297 original size:19 final size:20
Alignment explanation
Indices: 7425251--7425315 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 20
7425241 ACTATATAAT
* **
7425251 ATAAATAT-ATTAGTAACAA
1 ATAAATATAATTAATAATTA
7425270 ATAAAATATAATTAAT-ATTA
1 AT-AAATATAATTAATAATTA
*
7425290 ATAAATATTATTAATAAATTA
1 ATAAATATAATTAAT-AATTA
7425311 ATAAA
1 ATAAA
7425316 ATATTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 14 0.37
20 10 0.26
21 14 0.37
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (20 bp):
ATAAATATAATTAATAATTA
Found at i:7425320 original size:19 final size:21
Alignment explanation
Indices: 7425269--7425321 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 21
7425259 ATTAGTAACA
7425269 AATAAAATA-TAATTAATATT
1 AATAAAATATTAATTAATATT
7425289 AAT-AAATATT-ATTAATAAATT
1 AATAAAATATTAATTAAT--ATT
7425310 AATAAAATATTA
1 AATAAAATATTA
7425322 TTTTATAACG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
19 11 0.39
20 4 0.14
21 6 0.21
22 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AATAAAATATTAATTAATATT
Found at i:7426603 original size:502 final size:501
Alignment explanation
Indices: 7425661--7426635 Score: 1392
Period size: 502 Copynumber: 1.9 Consensus size: 501
7425651 TTTTGGAGCC
*
7425661 CAAAATGTCAAAATTTTGGTTTTGAGCGATTATAGGAATGAAAACCATTTCCATGATTTCAAATT
1 CAAAATGTCAAAATTTTGGTTTTGAGCGATTATAGGAATGAAAACCATTTCCACGATTTCAAATT
* * *
7425726 GTGATACAAAAACCATCTGAACGATTTTAACATTTCATTGCGTTTCTGCTCTAGGCGCATTTTTT
66 GTGACACAAAAACCATCTGAACGATTTTAACATTT-ATTGCATTTCTGCTCTAGGCGCATTATTT
* *
7425791 AAGGGGATTCATGAAAGCTCTAAAGAATGTGTGATGCTGCTGATATTTGGATATCATTTGTGAAA
130 AAGGGGATTCATGAAAGCTCTAAAGAATGTGGGATACTGCTGATATTTGGATATCATTTGTGAAA
* *
7425856 TCATTATTGGCGCCTGATGTGATTAACTGTGTGCTAACTTGTTTTTATATATTATGTACAAGCTC
195 TCATTATTGGCACCTGATGTGATTAACTGTGTGCTAACTTGTTTTTATATATTATGAACAAGCTC
* * *
7425921 AAAACTGTTTTTCGTAGCTTTATGCTTTGCTTTGAAAACCATTTCTGCTAAAGCCGAGCTTTGAA
260 AAAACTGTTTTTCATAGCATTATGCTTTGCTTTGAAAACCAATTCTGCTAAAGCCGAGCTTTGAA
* * * *
7425986 GTATGAAATATTGTTTTAGAAAGTTTTTAAATGGAAATGAGCTTGAATATCTTGAATCTAATGTT
325 CTATGAAATATTGTTTTAGAAAGTGTTTAAATGAAAATGAGCTTGAATATCTTGAATCCAATGTT
* * * *
7426051 TTAAACTTGCTCAAACAGAGAAACATTATAGCTTGCATTGGTTTTAATTTTTCACAGTGTTAAAG
390 TTAAACTTGCTCAAACAGAGAAACATGATAACTTGCATTGGTTTTAATTTTTCACAATGTTAAAA
*
7426116 TGCAAGTTATGGAGGATTAGAGCCAATGTAATTTTTTAGGATTAGCT
455 TGCAAGATATGGAGGATTAGAGCCAATGTAATTTTTTAGGATTAGCT
* * * * *
7426163 CAAAATGTCAAAATTTTGTTTTTGAGTGATTATGGGAGTGAAAACCATTTGCACGATTTCAAATT
1 CAAAATGTCAAAATTTTGGTTTTGAGCGATTATAGGAATGAAAACCATTTCCACGATTTCAAATT
* * * ***
7426228 GTGACATAAAATCCATTTGTGTGATTTT-A-ATTT-TTG-ATTTC-G-TCTA-GCGCATTATTTA
66 GTGACACAAAAACCATCTGAACGATTTTAACATTTATTGCATTTCTGCTCTAGGCGCATTATTTA
* * * *
7426286 AGGGGATTCATGAATGCTCTAAGGATTTTGTGGGATACTGCTTATATTTGGATATCATTT-TGAA
131 AGGGGATTCATGAAAGCTCTAAAGA--ATGTGGGATACTGCTGATATTTGGATATCATTTGTGAA
** *
7426350 ATTGTTATTGGTACCTGATGTGATTAACTGTGTGTGCTAACTTGTTTTTATATATTATGAACAAG
194 ATCATTATTGGCACCTGATGTGATTAAC--TGTGTGCTAACTTGTTTTTATATATTATGAACAAG
* *
7426415 CTTAAAAGCTTAAAGTTTTTCATAGCATTATGCTTTGCTTTGAAAACCAATTCTGCTAGAGCCGA
257 CTCAAAA-C-T---GTTTTTCATAGCATTATGCTTTGCTTTGAAAACCAATTCTGCTAAAGCCGA
* *
7426480 GCTTTGAACTATGAAATATTGTTTTCA-CAAGTGTTTAAATGAAAATGAGTTTGAATATCTTGAA
317 GCTTTGAACTATGAAATATTGTTTT-AGAAAGTGTTTAAATGAAAATGAGCTTGAATATCTTGAA
* *
7426544 TCCAATGTTTTAAACTTGCTTAAACAGAGAAACATGATAACTTGCATTGGTTTTAATTTTTCAGA
381 TCCAATGTTTTAAACTTGCTCAAACAGAGAAACATGATAACTTGCATTGGTTTTAATTTTTCACA
7426609 ATGTTAAAATGCAAGATATGGAGGATT
446 ATGTTAAAATGCAAGATATGGAGGATT
7426636 TTGGAGCTCA
Statistics
Matches: 419, Mismatches: 44, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
494 34 0.08
495 32 0.08
496 30 0.07
497 44 0.11
498 4 0.01
499 1 0.00
500 4 0.01
501 1 0.00
502 268 0.64
503 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.39
Consensus pattern (501 bp):
CAAAATGTCAAAATTTTGGTTTTGAGCGATTATAGGAATGAAAACCATTTCCACGATTTCAAATT
GTGACACAAAAACCATCTGAACGATTTTAACATTTATTGCATTTCTGCTCTAGGCGCATTATTTA
AGGGGATTCATGAAAGCTCTAAAGAATGTGGGATACTGCTGATATTTGGATATCATTTGTGAAAT
CATTATTGGCACCTGATGTGATTAACTGTGTGCTAACTTGTTTTTATATATTATGAACAAGCTCA
AAACTGTTTTTCATAGCATTATGCTTTGCTTTGAAAACCAATTCTGCTAAAGCCGAGCTTTGAAC
TATGAAATATTGTTTTAGAAAGTGTTTAAATGAAAATGAGCTTGAATATCTTGAATCCAATGTTT
TAAACTTGCTCAAACAGAGAAACATGATAACTTGCATTGGTTTTAATTTTTCACAATGTTAAAAT
GCAAGATATGGAGGATTAGAGCCAATGTAATTTTTTAGGATTAGCT
Found at i:7439250 original size:22 final size:22
Alignment explanation
Indices: 7439224--7439267 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7439214 TGTATATTTA
*
7439224 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7439246 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7439268 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7443129 original size:22 final size:22
Alignment explanation
Indices: 7443103--7443146 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7443093 TGTATATTTA
*
7443103 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7443125 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7443147 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Done.