Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 45 of 91
Found at i:7443934 original size:230 final size:230
Alignment explanation
Indices: 7443530--7443987 Score: 853
Period size: 230 Copynumber: 2.0 Consensus size: 230
7443520 ACAGCACCAA
*
7443530 CTCCATCTCGTGACTGCATTATTTATGTAATGTATAGAAGGAGAAGATTCATAAAGCAATCAAAG
1 CTCCATCTCGTGACTGCATTATTTATGTAATGTATAGAAAGAGAAGATTCATAAAGCAATCAAAG
7443595 AAAATCACTTGTAGGTGCACCTACTAAAGTATTGCTCAATTATTATGAACTTCACTTAATGTCAA
66 AAAATCACTTGTAGGTGCACCTACTAAAGTATTGCTCAATTATTATGAACTTCACTTAATGTCAA
* *
7443660 GTAACCCATCAATGGCAGGTCAGTTCTTACAGACATGGAAAATATCAATTCAATGCACACGTGGC
131 GTAACCCATCAATGGCAGGTCAGTTCTTACAGACATGAAAAATATCAATTCAATGCACACATGGC
7443725 ATTTATTCTTGCACAAGAAAGCATAACATACCCTG
196 ATTTATTCTTGCACAAGAAAGCATAACATACCCTG
* * *
7443760 CTCCATCTTGTGACTGCATTATTTATGTAATGTATAGAAAGAGAAGATTCATAAAGCATTCCAAG
1 CTCCATCTCGTGACTGCATTATTTATGTAATGTATAGAAAGAGAAGATTCATAAAGCAATCAAAG
*
7443825 AAAATCACTTGTAGGTGCACCTACTAAAGTATTGCTCAATTATTATGAACTTCGCTTAATGTCAA
66 AAAATCACTTGTAGGTGCACCTACTAAAGTATTGCTCAATTATTATGAACTTCACTTAATGTCAA
7443890 GTAACCCATCAATGGCAGGTCAGTTCTTACAGACATGAAAAATATCAATTCAATGCACACATGGC
131 GTAACCCATCAATGGCAGGTCAGTTCTTACAGACATGAAAAATATCAATTCAATGCACACATGGC
7443955 ATTTATTCTTGCACAAGAAAGCATAACATACCC
196 ATTTATTCTTGCACAAGAAAGCATAACATACCC
7443988 GGCCCATAAT
Statistics
Matches: 221, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
230 221 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (230 bp):
CTCCATCTCGTGACTGCATTATTTATGTAATGTATAGAAAGAGAAGATTCATAAAGCAATCAAAG
AAAATCACTTGTAGGTGCACCTACTAAAGTATTGCTCAATTATTATGAACTTCACTTAATGTCAA
GTAACCCATCAATGGCAGGTCAGTTCTTACAGACATGAAAAATATCAATTCAATGCACACATGGC
ATTTATTCTTGCACAAGAAAGCATAACATACCCTG
Found at i:7444436 original size:12 final size:13
Alignment explanation
Indices: 7444419--7444468 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
7444409 AGACATTCAC
7444419 AAATAAAT-AAAT
1 AAATAAATAAAAT
7444431 AAATAAATAAAAT
1 AAATAAATAAAAT
* *
7444444 AAACATATAAAAGT
1 AAATAAATAAAA-T
7444458 GAAA-AAATAAA
1 -AAATAAATAAA
7444469 GAAATGACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 8 0.25
13 14 0.44
14 7 0.22
15 3 0.09
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:7448051 original size:18 final size:18
Alignment explanation
Indices: 7448028--7448083 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
7448018 ACGACAAAAC
*
7448028 AAAATAACATAACGATTT
1 AAAATAACATAACTATTT
*
7448046 AAAATAA-ATAATTA-TT
1 AAAATAACATAACTATTT
*
7448062 AAAATAGTCATAACTATTT
1 AAAATA-ACATAACTATTT
7448081 AAA
1 AAA
7448084 CTCACTCGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
16 8 0.26
17 5 0.16
18 13 0.42
19 5 0.16
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.32
Consensus pattern (18 bp):
AAAATAACATAACTATTT
Found at i:7448927 original size:172 final size:173
Alignment explanation
Indices: 7448721--7449036 Score: 422
Period size: 172 Copynumber: 1.8 Consensus size: 173
7448711 TTATAATTTT
* * * * *
7448721 AAATCTTTTAATTATTAATTTTCAAAATATTAATAACA-TGGTATTATTTTATTTACAATAACCT
1 AAATCTTTTAATTATTAATTATCAAAATATTAATAA-ATTAGTATTATTTTAATCAAAATAACCT
* * * * * *
7448785 TATATGAATTGAAATAAGTGTTTTATGACAAAACAAAAAGTCAT-AACGATTTGAAATAGATAAC
65 TATAAGAATAGAAAGAAGTGTTTTATAACAAAACAAAAAGTCATAAAAGATTTGAAATAAATAAC
*
7448849 TATTCAAATAGTCATGACTGTCTAGGTAAACATATTTATTTCTA
130 TACTCAAATAGTCATGACTGTCTAGGTAAACATATTTATTTCTA
*
7448893 AAAT-TTTTAATTTATTAATTATCAAAATATTAATAAATTAGTATTATTTTAATCAAAATAAGCT
1 AAATCTTTTAA-TTATTAATTATCAAAATATTAATAAATTAGTATTATTTTAATCAAAATAACCT
* * * * *
7448957 TGTAAGAATAGAAAGAATTGTTTTATAACATAACAAAATGTCATAAAAGATTTGAAATAAATAAT
65 TATAAGAATAGAAAGAAGTGTTTTATAACAAAACAAAAAGTCATAAAAGATTTGAAATAAATAAC
*
7449022 TGCTCAAATAGTCAT
130 TACTCAAATAGTCAT
7449037 AACTATTTAA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
171 7 0.06
172 85 0.70
173 30 0.25
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.38
Consensus pattern (173 bp):
AAATCTTTTAATTATTAATTATCAAAATATTAATAAATTAGTATTATTTTAATCAAAATAACCTT
ATAAGAATAGAAAGAAGTGTTTTATAACAAAACAAAAAGTCATAAAAGATTTGAAATAAATAACT
ACTCAAATAGTCATGACTGTCTAGGTAAACATATTTATTTCTA
Found at i:7449519 original size:181 final size:179
Alignment explanation
Indices: 7448732--7449679 Score: 694
Period size: 177 Copynumber: 5.3 Consensus size: 179
7448722 AATCTTTTAA
** * * * * *
7448732 TTATTAATTTTCAAAATATTAATAACA-TGGTATTATTTTATTTACAATAACCTT-ATATGAATT
1 TTATTAATTTTTGAAATATTAATAA-ATTAGTATTATTTTATTCAGAATAAGCTTGA-ATGAATA
* * * * * * *
7448795 GAAATAAGTGTTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAGATAACTATTCAAATAG
64 GAAAAAATTGTTTTATGACATAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAG
* * * * * * ***
7448860 TCATGAC--TGT---CTAG---G-TAAACATATTTATTTCTAAAATTTTTAAT
129 TCATAACTATTTAAACTAGTTTGATAAATAAATTTATTTTTTAAATCACT--T
* ** * *
7448904 TTATTAATTATCAAAATATTAATAAATTAGTATTATTTTAATCAAAATAAGCTTGTAA-GAATAG
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCAGAATAAGCTTG-AATGAATAG
* * * * * *
7448968 AAAGAATTGTTTTATAACATAACAAAATGTCATAAAAGATTTGAAATAAATAATTGCTCAAATAG
65 AAAAAATTGTTTTATGACATAACAAAAGGTCAT-AATGATTTGAAATAGATAATTGTTCAAATAG
* *
7449033 TCATAACTATTTAAACAAGTTTGATAAATAGATTTATTTTTTAAATCACTT
129 TCATAACTATTTAAACTAGTTTGATAAATAAATTTATTTTTTAAATCACTT
* * ** * *
7449084 TT-TT-ATTTTTGAAATATTAATAGATTAGTATTACTTTATTCCTAATAAACTT-ATATGAACA-
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCAGAATAAGCTTGA-ATGAATAG
* * * * * * *
7449145 AAACCATTTGTTTTATGACAAAACAAAAAGTAATAATGATTTGAAATATG-TAATTATTTAAATA
65 AAA-AAATTGTTTTATGACATAACAAAAGGTCATAATGATTTGAAATA-GATAATTGTTCAAATA
** * * *
7449209 GTCATAGTTATTTAAACT-GATTAGGTAAATAGAA-TTATTTTTTAAAT--CTC
128 GTCATAACTATTTAAACTAG-TTTGATAAATA-AATTTATTTTTTAAATCACTT
* * * * *
7449259 TTATTAATTTTTGAAATATTAATAAATTCA-TTTTATTTTATTCTGAATAAGCTAGTATGAATTG
1 TTATTAATTTTTGAAATATTAATAAATT-AGTATTATTTTATTCAGAATAAGCTTGAATGAATAG
* * *
7449323 AAAAAATTCTTTTATGACA-AGACAAAAGGTCATAATGATTTGAATTAGATAATTGTTCATATAG
65 AAAAAATTGTTTTATGACATA-ACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAG
* * *
7449387 TCTTAACTATTTGAACTAGTTTGACAAATAAATTTATTTTTTAAATCACTT
129 TCATAACTATTTAAACTAGTTTGATAAATAAATTTATTTTTTAAATCACTT
* * * * *
7449438 AGTTATTAATTTTTGGAATATTATTAGATTAGTATTGTTTTATTTC-GAATAAGCTTGAACGAAT
1 --TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTA-TTCAGAATAAGCTTGAATGAAT
* * * * * * * *
7449502 AGAAATAATTATTTTATGGCATAACAAAAGGTTATAACGA-TTAAAAGTATAAAATTGTTCAAAT
63 AGAAAAAATTGTTTTATGACATAACAAAAGGTCATAATGATTTGAAA-TAGATAATTGTTCAAAT
* * * * * * * *
7449566 AGTTATAACTATTTGAACTGGTTCGGTAAACAGATTCATTTTTTAAAT---TT
127 AGTCATAACTATTTAAACTAGTTTGATAAATAAATTTATTTTTTAAATCACTT
* * *
7449616 CTTATTAATTTTTGAAAGATTAATAAATTGTTATTATTATTTTATTTC-GAATAAGCTTGTATGA
1 -TTATTAATTTTTGAAATATTAATAAA---TTAGTATTATTTTA-TTCAGAATAAGCTTGAATGA
7449680 TCAAATACTT
Statistics
Matches: 618, Mismatches: 119, Indels: 70
0.77 0.15 0.09
Matches are distributed among these distances:
171 1 0.00
172 79 0.13
173 33 0.05
174 1 0.00
175 6 0.01
176 8 0.01
177 213 0.34
178 78 0.13
179 4 0.01
180 38 0.06
181 134 0.22
182 23 0.04
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (179 bp):
TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCAGAATAAGCTTGAATGAATAGA
AAAAATTGTTTTATGACATAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTC
ATAACTATTTAAACTAGTTTGATAAATAAATTTATTTTTTAAATCACTT
Found at i:7449609 original size:358 final size:354
Alignment explanation
Indices: 7448917--7449679 Score: 865
Period size: 358 Copynumber: 2.1 Consensus size: 354
7448907 TTAATTATCA
* * ** * * *
7448917 AAATATTAATAAATTAGTATTATTTTAATCAAAATAAGCTTGTAAGAATAGAAAGAATTGTTTTA
1 AAATATTAATAAATTA-TTTTATTTTATTCTGAATAAGCTTGTATGAATAGAAAAAATTCTTTTA
*
7448982 TAACATAACAAAATGTCATAAAAGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTAA
65 TAACATAACAAAAGGTCATAAAAGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTAA
* *
7449047 ACAAGTTTGATAAATAGATTTATTTTTTAAATCACTTTTTTATTTTTGAAATATTAATAGATTAG
130 ACAAGTTTGACAAATAAATTTATTTTTTAAATCACTTTTTTATTTTTGAAATATTAATAGATTAG
* * * *
7449112 TATTACTTTATTCCTAATAAACTTATATGAACAAAACCATTTGTTTTATGACAAAACAAAAAGTA
195 TATTACTTTATTCCGAATAAACTTATACGAACAAAACCAATTATTTTATGACAAAACAAAAAGTA
* * ** * ** *
7449177 ATAATGATTTGAAATATGTAATTATTTAAATAGTCATAGTTATTTAAACTGATTAGGTAAATAGA
260 ATAACGATTTAAAATATAAAATTATTCAAATAGTCATAACTATTTAAACTGATTAGGTAAACAGA
7449242 ATTATTTTTTAAATCTCTTATTAATTTTTG
325 ATTATTTTTTAAATCTCTTATTAATTTTTG
* *
7449272 AAATATTAATAAATTCATTTTATTTTATTCTGAATAAGCTAGTATGAATTGAAAAAATTCTTTTA
1 AAATATTAATAAATT-ATTTTATTTTATTCTGAATAAGCTTGTATGAATAGAAAAAATTCTTTTA
* * * * * * * *
7449337 TGACA-AGACAAAAGGTCAT-AATGATTTGAATTAGATAATTGTTCATATAGTCTTAACTATTTG
65 TAACATA-ACAAAAGGTCATAAAAGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTA
* * *
7449400 AACTAGTTTGACAAATAAATTTATTTTTTAAATCACTTAGTTATTAATTTTTGGAATATTATTAG
129 AACAAGTTTGACAAATAAATTTATTTTTTAAATCACTT--TT-TT-ATTTTTGAAATATTAATAG
** * * * * * *
7449465 ATTAGTATTGTTTTATTTCGAATAAGCTTGA-ACGAATAGAAA-TAATTATTTTATGGCATAACA
190 ATTAGTATTACTTTATTCCGAATAAACTT-ATACGAACA-AAACCAATTATTTTATGACAAAACA
* * * * * * *
7449528 AAAGGTTATAACGA-TTAAAAGTATAAAATTGTTCAAATAGTTATAACTATTTGAACTGGTTCGG
253 AAAAGTAATAACGATTTAAAA-TATAAAATTATTCAAATAGTCATAACTATTTAAACTGATTAGG
*
7449592 TAAACAG-ATTCATTTTTTAAATTTCTTATTAATTTTTG
317 TAAACAGAATT-ATTTTTTAAATCTCTTATTAATTTTTG
*
7449630 AAAGATTAATAAATTGTTATTATTATTTTATT-TCGAATAAGCTTGTATGA
1 AAATATTAATAAA---TTATT-TTATTTTATTCT-GAATAAGCTTGTATGA
7449680 TCAAATACTT
Statistics
Matches: 340, Mismatches: 53, Indels: 24
0.82 0.13 0.06
Matches are distributed among these distances:
354 73 0.21
355 69 0.20
356 3 0.01
357 10 0.03
358 150 0.44
359 4 0.01
360 4 0.01
361 27 0.08
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (354 bp):
AAATATTAATAAATTATTTTATTTTATTCTGAATAAGCTTGTATGAATAGAAAAAATTCTTTTAT
AACATAACAAAAGGTCATAAAAGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTAAA
CAAGTTTGACAAATAAATTTATTTTTTAAATCACTTTTTTATTTTTGAAATATTAATAGATTAGT
ATTACTTTATTCCGAATAAACTTATACGAACAAAACCAATTATTTTATGACAAAACAAAAAGTAA
TAACGATTTAAAATATAAAATTATTCAAATAGTCATAACTATTTAAACTGATTAGGTAAACAGAA
TTATTTTTTAAATCTCTTATTAATTTTTG
Found at i:7450197 original size:181 final size:178
Alignment explanation
Indices: 7449693--7451393 Score: 1021
Period size: 181 Copynumber: 9.5 Consensus size: 178
7449683 AATACTTATT
* * * * *
7449693 ATTTGAAATAGATAATTATTCTAATAGTC-TAACTATTTGAAC-TGATTC-GACAAACACATTTA
1 ATTTGAAATAGATAA-TATTCAAATAATCATAACTATTTGAACTTG-TTCAG-TAAATATATTTA
* * * * * * *
7449755 TTTTTTTAAATC---T-CTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTGAATT-GAA
63 -TTTTTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAATTA-AATTATTTTATTTCAAA
* * ** * * * *
7449815 TAAGCCAGTATGAAAAGAAACACTTGTTTTATGACAAAATAAATA-TCATAAAG
126 AAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAA-AGTCATAATG
* * * * * *
7449868 ATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTAT-TTCAAT-AATAGATTT-T
1 ATTTGAAATAGATAA-TATTCAAATAATCATAACTATTTGAACT-TGTTCAGTAAATATATTTAT
* * * * * * * **
7449930 ATTTTTAAATC---T-CTTATTAATTATCAAAATATTAATAGATCAGTATTATTATATTT-TGAA
64 -TTTTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAATTA-AATTATTTTATTTCAAAA
* * * * ** *
7449990 TAATTATATATGAATAGAAATAATTGTTTTACAACAAAACAAAATGTCATTATG
127 AAACT-TGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATG
* * * * * * * * *
7450044 GTTTGAAATAGATAATAGTTCAAATAAACATGACTATTTAAACATATTCGGTAAACAAATTTATT
1 ATTTGAAATAGATAATA-TTCAAATAATCATAACTATTTGAACTTGTTCAGTAAATATATTTATT
*** *
7450109 TTTTAAATCTAAAACTTATTAATTTTTAGAATACTAATAAATTAGAATTATTTTATTTCAAAAAA
65 TTTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAATTA-AATTATTTTATTTCAAAAAA
** ** * *
7450174 AAATGTATGAATAGAATTAATTGTTTTATGACAAAATAAAAGATCATAACG
129 ACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAG-TCATAATG
* * * * * * *
7450225 ATTTGAAATAAATAATTATTCCAATAGTCATAACTATTTGAACTTGCTCAATAAACAGATTTATT
1 ATTTGAAATAGATAA-TATTCAAATAATCATAACTATTTGAACTTGTTCAGTAAATATATTTATT
* * * *
7450290 TTTTAAATATTCTACTTATTAATATTTT-GAATTTTAGTAAATTAATATTATTTTATTTCAAAAA
65 TTTTAAATCTTTTACTTATTAAT-TTTTAGAATATTAATAAATTAA-ATTATTTTATTTCAAAAA
* * * * *
7450354 AGCTTTTATGAATAGAAACAGTTGGTTTATGACAAAACAAAAGGTCATAATA
128 AACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATG
* * * * *
7450406 ATTTGAAATAGATAATTCTTCAAATAGTTATAACTATTTGAAATTGTTCAGAAAATATATTTATT
1 ATTTGAAATAGATAA-TATTCAAATAATCATAACTATTTGAACTTGTTCAGTAAATATATTTATT
* * * * *
7450471 TTTTAAA-GTTTTACTTATTAATTTTTGGAATATTAATAAATTTAAATTACTTTATTTGAAATAA
65 TTTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAA-TTAAATTATTTTATTTCAAAAAA
* * * * * * *
7450535 GCTTGCATGAACAGAATCAATTATTTAATGACAAAATAAAAGATCATAATG
129 ACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAG-TCATAATG
* * * *
7450586 TTTTGAAATAGATAATTGTTCAGATAATCATAACTATTTGAACTTATTCAGTAAATATATTCT-T
1 ATTTGAAATAGATAA-TATTCAAATAATCATAACTATTTGAACTTGTTCAGTAAATATATT-TAT
* * * * * * * * *
7450650 TTTTTAATTCTCTTACTCATTAATTTTCAGAATATTAATGAATTAGTATTATCTTACTTCAAATA
64 TTTTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAATTA-AATTATTTTATTTCAAAAA
* * * * * *
7450715 AACTTATATGAATTGAAACAAGTGTTTTATTATAAAAGAAAAGGTCATAATG
128 AACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATG
* * * *
7450767 ATTTGAAATAGATAATTATTTAAATATTCATGACTATTTGAACTTGTTTAGTAAATATATTTATT
1 ATTTGAAATAGATAA-TATTCAAATAATCATAACTATTTGAACTTGTTCAGTAAATATATTTATT
* * * * * * * *
7450832 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTTATAAATTAATATTATTTTAATCCGAATAA
65 TTTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAATTAA-ATTATTTTATTTCAAAAAA
* * * * **
7450897 ACTTGTATGAACAAAAATAATTATTTTATGACAAAACAAAAAGTCATAACA
129 ACTTGTATGAATAGAAACAATTGTTTTATGACAAAAC-AAAAGTCATAATG
* * * ** ** *
7450948 AGTTGAAATAAATAAT-TGCTTAAATAGCCATAA-TGATTTGAACTTGTTTGGTAAACT-GATTT
1 ATTTGAAATAGATAATAT--TCAAATAATCATAACT-ATTTGAACTTGTTCAGTAAA-TATATTT
* **
7451010 ATTTTTTTAAATATTTTACTTATTAATTGTCTT--AATATTAATAAATATGTATTATTTTA-TTC
62 A-TTTTTTAAATCTTTTACTTATTAATT-T-TTAGAATATTAATAAAT-TAAATTATTTTATTTC
* * * * * * * *
7451072 AAAATAAGCTTAG-ATGAACAAAAAAAAATTCTTTTATGACAAAACAAAAGGTTATAGTT
123 AAAA-AAACTT-GTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATG
* * * * * * * * * * * * *
7451131 ATTTCAAATAGATAATTATGT-AAACAGTCCTAATTATTTAAATTTGTTTAGAAAACAAAGTCAT
1 ATTTGAAATAGATAA-TAT-TCAAATAATCATAACTATTTGAACTTGTTCAGTAAATATATTTAT
* * * * * ** *
7451195 TTTTTAAATCTCTTTA-TTATAAAATTTTGGATTATTAATAAATTAGTATTATTTTATTTTGAAT
64 TTTTTAAATCT-TTTACTTATTAATTTTTAGAATATTAATAAATTA-AATTATTTTATTTCAAAA
** * * * *
7451259 AAGTTTATATGAATTGAAACAATTCTTTTATGACAAAGCAAAAAGTCAT--T-
127 AAACTTGTATGAATAGAAACAATTGTTTTATGACAAAAC-AAAAGTCATAATG
** * * * * * *
7451309 A----AAATAGATAATTATTCAAATTGTCTTGATTATTTGATCTAGTGT-GGTAAATATATTTA-
1 ATTTGAAATAGATAA-TATTCAAATAATCATAACTATTTGAACTTGT-TCAGTAAATATATTTAT
*
7451368 TTTTTAAAACTTTTTACTTATTAATT
64 TTTTTAAATC-TTTTACTTATTAATT
7451394 GTCAAAATAT
Statistics
Matches: 1203, Mismatches: 264, Indels: 119
0.76 0.17 0.08
Matches are distributed among these distances:
173 15 0.01
174 95 0.08
175 65 0.05
176 58 0.05
177 17 0.01
178 3 0.00
179 7 0.01
180 150 0.12
181 579 0.48
182 131 0.11
183 78 0.06
184 4 0.00
185 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (178 bp):
ATTTGAAATAGATAATATTCAAATAATCATAACTATTTGAACTTGTTCAGTAAATATATTTATTT
TTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAATTAAATTATTTTATTTCAAAAAAAC
TTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGTCATAATG
Found at i:7450655 original size:361 final size:357
Alignment explanation
Indices: 7449693--7451295 Score: 1256
Period size: 361 Copynumber: 4.5 Consensus size: 357
7449683 AATACTTATT
* * * *
7449693 ATTTGAAATAGATAATTATTCTAATAG-TCTAACTATTTG-AACTGATTC-GACAAACACATTTA
1 ATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAAATTG-TTCAGA-AAACATATTTA
* * * * * *
7449755 TTTTTTTAAA-TCT-CTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTGAA-TTGAATA
64 -TTTTTTAAATTTTACTTATTAATTTTTAGAATATTAATAAATTAGAATTATTTTAATTTGAATA
* ** * * * * * * * *
7449817 AGCCAGTATGAAAAGAAACACTTGTTTTATGACAAAAT-AAATATCATAAAGATTTGAGATAGAT
128 AACTTGTATGAACAGAATCAATTATTTTATGACAAAATAAAAGATCATAACGATTTGAAATAAAT
*
7449881 AATTGTTCAAATAGTCATAAATATTTGAAC-TATTTCAAT-AATAGATTTTATTTTTAA-A-TCT
193 AATTGTTCAAATAGTCATAACTATTTGAACTTA-TTCAATAAATAGATTTT-TTTTTAATATTCT
* * * * * ** * *
7449942 -CTTATTAATTATCAAAATATTAATAGATCAGTATTATTATATTTTGAATAATTATATATGAATA
256 ACTTATTAATTATTAGAATATTAATAAATTAGTATTATTTTATTTCAAAAAACT-TATATGAATA
* ** * *
7450006 GAAATAATTGTTTTACAACAAAACAAAATGTCATTATG
320 GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* *** * * * * * *
7450044 GTTTGAAATAGATAA-TAGTTCAAATAAACATGACTATTT-AAACATATTCGGTAAACAAATTTA
1 ATTTGAAATAGATAATTA-TTCAAATAGTTATAACTATTTGAAA-TTGTTCAGAAAACATATTTA
** * *
7450107 TTTTTTAAATCTAAAACTTATTAATTTTTAGAATACTAATAAATTAGAATTATTTT-ATTTCAAA
64 TTTTTTAAAT-T-TTACTTATTAATTTTTAGAATATTAATAAATTAGAATTATTTTAATTT-GAA
* ** * * *
7450171 AAAAAATGTATGAATAGAATTAATTGTTTTATGACAAAATAAAAGATCATAACGATTTGAAATAA
126 TAAACTTGTATGAACAGAATCAATTATTTTATGACAAAATAAAAGATCATAACGATTTGAAATAA
* * ** *
7450236 ATAATTATTCCAATAGTCATAACTATTTGAACTTGCTCAATAAACAGATTTATTTTTTAAATATT
191 ATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCAATAAATAGATTT-TTTTTT-AATATT
* * * * *
7450301 CTACTTATTAA-TATTTTGAATTTTAGTAAATTAATATTATTTTATTTCAAAAAAGCTTTTATGA
254 CTACTTATTAATTA-TTAGAATATTAATAAATTAGTATTATTTTATTTCAAAAAA-CTTATATGA
* * *
7450365 ATAGAAACAGTTGGTTTATGACAAAACAAAAGGTCATAATA
317 ATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* *
7450406 ATTTGAAATAGATAATTCTTCAAATAGTTATAACTATTTGAAATTGTTCAGAAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAAATTGTTCAGAAAACATATTTATT
* *
7450471 TTTTAAAGTTTTACTTATTAATTTTTGGAATATTAATAAATTTA-AATTACTTT-ATTTGAAATA
66 TTTTAAA-TTTTACTTATTAATTTTTAGAATATTAATAAA-TTAGAATTATTTTAATTTG-AATA
* * * * * *
7450534 AGCTTGCATGAACAGAATCAATTATTTAATGACAAAATAAAAGATCATAATGTTTTGAAATAGAT
128 AACTTGTATGAACAGAATCAATTATTTTATGACAAAATAAAAGATCATAACGATTTGAAATAAAT
* * * *
7450599 AATTGTTCAGATAATCATAACTATTTGAACTTATTCAGTAAATATATTCTTTTTTTAAT-TCTCT
193 AATTGTTCAAATAGTCATAACTATTTGAACTTATTCAATAAATAGATT-TTTTTTTAATAT-TC-
* * * *
7450663 TACTCATTAATT-TTCAGAATATTAATGAATTAGTATTATCTTACTTCAAATAAACTTATATGAA
255 TACTTATTAATTATT-AGAATATTAATAAATTAGTATTATTTTATTTCAAA-AAACTTATATGAA
* * * * *
7450727 TTGAAACAAGTGTTTTATTATAAAAGAAAAGGTCATAATG
318 TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * *
7450767 ATTTGAAATAGATAATTATTTAAATA-TTCATGACTATTTGAACTTGTTTAGTAAATATATTTAT
1 ATTTGAAATAGATAATTATTCAAATAGTT-ATAACTATTTGAAATTGTTCAGAAAACATATTTAT
* * * * **
7450831 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATTTATAAATTA-ATATTATTTTAATCCGAAT
65 TTTTTAAA--TTTTACTTATTAATTTTTAGAATATTAATAAATTAGA-ATTATTTTAATTTGAAT
* * * *
7450895 AAACTTGTATGAACAAAAAT-AATTATTTTATGACAAAACAAAA-AGTCATAACAAGTTGAAATA
127 AAACTTGTATGAAC-AGAATCAATTATTTTATGACAAAATAAAAGA-TCATAACGATTTGAAATA
* * ***
7450958 AATAATTGCTT-AAATAGCCATAA-TGATTTGAACTTGTTTGGTAAACT-GATTTATTTTTTTAA
190 AATAATTG-TTCAAATAGTCATAACT-ATTTGAACTTATTCAATAAA-TAGA-TT-TTTTTTT-A
* * *
7451020 ATATTTTACTTATTAATTGTCT-TAATATTAATAAA-TATGTATTATTTTA-TTCAAAATAAGCT
249 ATATTCTACTTATTAATTAT-TAGAATATTAATAAATTA-GTATTATTTTATTTCAAAA-AA-CT
* * * * * * * *
7451082 TAGATGAACAAAAAAAAATTCTTTTATGACAAAACAAAAGGTTATAGTT
310 TATATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * ** * * * * *
7451131 ATTTCAAATAGATAATTATGT-AAACAGTCCTAATTATTT-AAATTTGTTTAGAAAACAAAGTCA
1 ATTTGAAATAGATAATTAT-TCAAATAGTTATAACTATTTGAAA-TTGTTCAGAAAACATATTTA
* * * * * *
7451194 TTTTTTAAATCTCTTTA-TTATAAAATTTTGGATTATTAATAAATTAGTATTATTTTATTTTGAA
64 TTTTTTAAA--T-TTTACTTATTAATTTTTAGAATATTAATAAATTAGAATTATTTTAATTTGAA
** * ** * *
7451258 TAAGTTTATATGAATTGAAACAATTCTTTTATGACAAA
126 TAAACTTGTATGAACAGAATCAATTATTTTATGACAAA
7451296 GCAAAAAGTC
Statistics
Matches: 997, Mismatches: 199, Indels: 99
0.77 0.15 0.08
Matches are distributed among these distances:
350 2 0.00
351 30 0.03
352 23 0.02
353 3 0.00
354 1 0.00
355 36 0.04
356 33 0.03
357 54 0.05
358 14 0.01
359 4 0.00
360 10 0.01
361 293 0.29
362 266 0.27
363 70 0.07
364 150 0.15
365 8 0.01
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (357 bp):
ATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAAATTGTTCAGAAAACATATTTATT
TTTTAAATTTTACTTATTAATTTTTAGAATATTAATAAATTAGAATTATTTTAATTTGAATAAAC
TTGTATGAACAGAATCAATTATTTTATGACAAAATAAAAGATCATAACGATTTGAAATAAATAAT
TGTTCAAATAGTCATAACTATTTGAACTTATTCAATAAATAGATTTTTTTTTAATATTCTACTTA
TTAATTATTAGAATATTAATAAATTAGTATTATTTTATTTCAAAAAACTTATATGAATAGAAACA
ATTGTTTTATGACAAAACAAAAGGTCATAATG
Found at i:7450727 original size:542 final size:532
Alignment explanation
Indices: 7449693--7451091 Score: 1312
Period size: 542 Copynumber: 2.6 Consensus size: 532
7449683 AATACTTATT
* * *
7449693 ATTTGAAATAGATAATTATTCTAATAGTC-TAACTATTTGAAC-TGATTCGACAAACACATTTAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTCAATAAACACATTTAT
* * * * * * *
7449756 TTTTTTAA-A-TCT-CTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTGAATT-GAATA
65 TTTTTAAATATTCTACTTATTAATTTTT-GAATTTTA-TAAATTAATATTATTTTAATTCAAAAA
** * * *
7449817 AGCCAGTATGAAAAGAAACACTTGTTTTATGACAAAATAAATA-TCATAAAGATTTGAGATAGAT
128 AGCTTGTATGAAAAGAAACAATTGTTTTATGACAAAACAAA-AGTCATAAA-ATTTGAAATAGAT
* * *
7449881 AATTGTTCAAATAGTCATAAATATTTGAACTAT-TTCA-ATAATAGATTT-TATTTTTAAA-TCT
191 AATTCTTCAAATAGTCAT-AATATTTGAACT-TGTTCAGAAAATAGATTTAT-TTTTTAAATTTT
** * * * *
7449942 -CTTATTAATTATCAAAATATTAATAGA-TCAGTATTATTATATTTTG-AATAA-TTATATATGA
253 ACTTATTAATT-T-TTAATATTAATAAATTTA-TATTATT-TA-TTTGAAATAAGCT-T-GATGA
* * * *
7450003 ATAGAAATAATTGTTTTACAACAAAACAAAATGTCATTATGGTTTGAAATAGATAATAGTTCAAA
311 ACAGAAATAATTATTTAACAACAAAACAAAATGTCATAATGGTTTGAAATAGATAATAGTTCAAA
* * *
7450068 TAAACATGACTATTTAAACATATTCGGTAAACAAATTTATTTTTTAAATCTAAAACTTATTAATT
376 TAAACATAACTATTTAAACATATTCAGTAAACAAATTTATTTTTTAAATCTAAAACTCATTAATT
* * * * ** *
7450133 TTTAGAATACTAATAAATTAGAATTATTTTATTTCAAAAAAAAATGTATGAATAGAATTAATTGT
441 TTCAGAATACTAATAAATTAGAATTATCTTACTTCAAAAAAAAATATATGAATAGAAACAAGTGT
*
7450198 TTTATGACAAAATAAAAGATCATAACG
506 TTTATGACAAAAGAAAAGATCATAACG
* * * *
7450225 ATTTGAAATAAATAATTATTCCAATAGTCATAACTATTTGAACTTGCTCAATAAACAGATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAACACATTTATT
*
7450290 TTTTAAATATTCTACTTATTAATATTTTGAATTTTAGTAAATTAATATTATTTTATTTCAAAAAA
66 TTTTAAATATTCTACTTATTAAT-TTTTGAATTTTA-TAAATTAATATTATTTTAATTCAAAAAA
* * * *
7450355 GCTTTTATGAATAGAAACAGTTGGTTTATGACAAAACAAAAGGTCATAATAATTTGAAATAGATA
129 GCTTGTATGAAAAGAAACAATTGTTTTATGACAAAACAAAA-GTCATAA-AATTTGAAATAGATA
* * *
7450420 ATTCTTCAAATAGTTATAACTATTTGAAATTGTTCAGAAAATATATTTATTTTTTAAAGTTTTAC
192 ATTCTTCAAATAGTCATAA-TATTTGAACTTGTTCAGAAAATAGATTTATTTTTTAAA-TTTTAC
*
7450485 TTATTAATTTTTGGAATATTAATAAATTTAAATTACTTTATTTGAAATAAGCTTGCATGAACAG-
255 TTATTAATTTTT--AATATTAATAAATTTATATTA-TTTATTTGAAATAAGCTTG-ATGAACAGA
** * * * *
7450549 AATCAATTATTTAATGACAAAATAAAA-GATCATAATGTTTTGAAATAGATAATTGTTCAGATAA
316 AAT-AATTATTTAACAACAAAACAAAATG-TCATAATGGTTTGAAATAGATAATAGTTCAAATAA
* * * * * * ***
7450613 TCATAACTATTTGAACTTATTCAGTAAATATATTCT-TTTTTTAATTCTCTTACTCATTAATTTT
379 ACATAACTATTTAAACATATTCAGTAAACAAATT-TATTTTTTAAATCTAAAACTCATTAATTTT
* * * * ** *
7450677 CAGAATATTAATGAATTAGTATTATCTTACTTCAAATAAACTTATATGAATTGAAACAAGTGTTT
443 CAGAATACTAATAAATTAGAATTATCTTACTTCAAAAAAAAATATATGAATAGAAACAAGTGTTT
* * * *
7450742 TATTATAAAAGAAAAGGTCATAATG
508 TATGACAAAAGAAAAGATCATAACG
* * * * * * *
7450767 ATTTGAAATAGATAATTATTTAAATATTCATGACTATTTGAACTTGTTTAGTAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAACACATTTATT
* * *** * *
7450832 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTTATAAATTAATATTATTTTAATCCGAATAA
66 TTTTAAATATTCTACTTATTAATT-TTTGAAT-TTTATAAATTAATATTATTTTAATTC-AAAAA
* * * *
7450897 A-CTTGTATGAACAA-AAATAATTATTTTATGACAAAACAAAAAGTCATAACAAGTTGAAATAAA
128 AGCTTGTATGAA-AAGAAACAATTGTTTTATGACAAAAC-AAAAGTCATAA-AATTTGAAATAGA
* ** *
7450960 TAATTGCTT-AAATAGCCATAATGATTTGAACTTGTTTGGTAAACT-GATTTATTTTTTTAAATA
190 TAATT-CTTCAAATAGTCATAAT-ATTTGAACTTGTTCAG-AAAATAGATTTA-TTTTTT-AA-A
* * **
7451023 TTTTACTTATTAATTGTCTTAATATTAATAAATATGTATTATTTTATTCAAAATAAGCTTAGATG
249 TTTTACTTATTAATT-T-TTAATATTAATAAATTTATATTA-TTTATTTGAAATAAGCTT-GATG
7451088 AACA
310 AACA
7451092 AAAAAAAATT
Statistics
Matches: 709, Mismatches: 117, Indels: 70
0.79 0.13 0.08
Matches are distributed among these distances:
532 27 0.04
533 34 0.05
534 3 0.00
535 3 0.00
536 34 0.05
537 44 0.06
538 47 0.07
539 18 0.03
540 1 0.00
541 13 0.02
542 389 0.55
543 33 0.05
544 58 0.08
545 3 0.00
546 2 0.00
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (532 bp):
ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAACACATTTATT
TTTTAAATATTCTACTTATTAATTTTTGAATTTTATAAATTAATATTATTTTAATTCAAAAAAGC
TTGTATGAAAAGAAACAATTGTTTTATGACAAAACAAAAGTCATAAAATTTGAAATAGATAATTC
TTCAAATAGTCATAATATTTGAACTTGTTCAGAAAATAGATTTATTTTTTAAATTTTACTTATTA
ATTTTTAATATTAATAAATTTATATTATTTATTTGAAATAAGCTTGATGAACAGAAATAATTATT
TAACAACAAAACAAAATGTCATAATGGTTTGAAATAGATAATAGTTCAAATAAACATAACTATTT
AAACATATTCAGTAAACAAATTTATTTTTTAAATCTAAAACTCATTAATTTTCAGAATACTAATA
AATTAGAATTATCTTACTTCAAAAAAAAATATATGAATAGAAACAAGTGTTTTATGACAAAAGAA
AAGATCATAACG
Found at i:7451608 original size:26 final size:26
Alignment explanation
Indices: 7451545--7451608 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
7451535 ATTAATTATT
* *
7451545 AATTTGAATT-AAATTAAAATATTTC
1 AATTTCAATTAAAATTAAAATATTTA
* *
7451570 AATTTCAAATAAAATTAATATATTTA
1 AATTTCAATTAAAATTAAAATATTTA
7451596 AATATT-AATTAAA
1 AAT-TTCAATTAAA
7451609 GTATTAACTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 8 0.25
26 22 0.69
27 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (26 bp):
AATTTCAATTAAAATTAAAATATTTA
Found at i:7451710 original size:37 final size:38
Alignment explanation
Indices: 7451667--7451770 Score: 110
Period size: 37 Copynumber: 2.8 Consensus size: 38
7451657 TATTATTGAT
7451667 ATTAATTATTAAATAATAATTATTAATATG-TTTAATA
1 ATTAATTATTAAATAATAATTATTAATATGATTTAATA
* * *
7451704 ATTAATTATTAAA-ACTAATTAAT-ATATGAATTTATTA
1 ATTAATTATTAAATAATAATTATTAATATG-ATTTAATA
7451741 ATTAATTA--AAATAATTAACTTATTTAATAT
1 ATTAATTATTAAATAA-TAA-TTA-TTAATAT
7451771 TTATATAATC
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
35 8 0.15
36 9 0.16
37 30 0.55
38 3 0.05
39 1 0.02
40 4 0.07
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (38 bp):
ATTAATTATTAAATAATAATTATTAATATGATTTAATA
Found at i:7451724 original size:17 final size:16
Alignment explanation
Indices: 7451700--7451764 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
7451690 TAATATGTTT
7451700 AATAATTAATTATTAA
1 AATAATTAATTATTAA
*
7451716 AACTAATTAA-TATATGA
1 AA-TAATTAATTAT-TAA
* *
7451733 ATTTATTAATTAATTAA
1 AATAATTAATT-ATTAA
7451750 AATAATTAACTTATT
1 AATAATTAA-TTATT
7451765 TAATATTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
16 11 0.29
17 23 0.61
18 4 0.11
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (16 bp):
AATAATTAATTATTAA
Found at i:7451725 original size:33 final size:33
Alignment explanation
Indices: 7451653--7451758 Score: 92
Period size: 33 Copynumber: 3.1 Consensus size: 33
7451643 TATATCAATT
* *
7451653 TTAATATTATTGATATTAATT-ATTAAATAATAATTA
1 TTAATA-TA-TGA-ATTAATTAATTAATTAA-AATAA
* *
7451689 TTAATATGTTTAA-TAATTAATT-ATTAAAACTAA
1 TTAATAT-ATGAATTAATTAATTAATTAAAA-TAA
*
7451722 TTAATATATGAATTTATTAATTAATTAAAATAA
1 TTAATATATGAATTAATTAATTAATTAAAATAA
7451755 TTAA
1 TTAA
7451759 CTTATTTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
32 5 0.09
33 33 0.57
34 11 0.19
35 3 0.05
36 6 0.10
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (33 bp):
TTAATATATGAATTAATTAATTAATTAAAATAA
Found at i:7454085 original size:20 final size:18
Alignment explanation
Indices: 7454023--7454095 Score: 56
Period size: 20 Copynumber: 3.7 Consensus size: 18
7454013 TAATATTTGT
*
7454023 AATTAATTAATTAATTCTA
1 AATTAATTAA-TAATTATA
* *
7454042 AATTAATTTTATAATTTTA
1 AATTAA-TTAATAATTATA
7454061 TAATTAATCTAATAATTAATA
1 -AATTAAT-TAATAATT-ATA
7454082 AATTTAAATTAATA
1 AA-TT-AATTAATA
7454096 TATTTACAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
19 14 0.32
20 18 0.41
21 9 0.20
22 3 0.07
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (18 bp):
AATTAATTAATAATTATA
Found at i:7454289 original size:12 final size:12
Alignment explanation
Indices: 7454269--7454314 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
7454259 AAATTGTAAC
*
7454269 TAATAATATTAA
1 TAATTATATTAA
7454281 TAATTATATTAA
1 TAATTATATTAA
* *
7454293 TAATTAAAATAAA
1 TAATT-ATATTAA
7454306 TAATTATAT
1 TAATTATAT
7454315 ATTATTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 19 0.66
13 10 0.34
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TAATTATATTAA
Found at i:7454542 original size:16 final size:16
Alignment explanation
Indices: 7454505--7454545 Score: 52
Period size: 14 Copynumber: 2.7 Consensus size: 16
7454495 ATATAATATC
7454505 AATTATTATTA-TATTA
1 AATTATT-TTATTATTA
7454521 AA--ATTTTATTATTA
1 AATTATTTTATTATTA
7454535 AATTATTTTAT
1 AATTATTTTAT
7454546 ATCAATTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 3 0.14
14 10 0.45
16 9 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
AATTATTTTATTATTA
Found at i:7455343 original size:86 final size:84
Alignment explanation
Indices: 7455241--7455511 Score: 243
Period size: 86 Copynumber: 3.2 Consensus size: 84
7455231 CCATTTAAAA
*
7455241 AATAAT-TTAATATATTATCCCTAATTTTTTCCCAAAATTATAAATTTAATATTATAATTTATTA
1 AATAATATTAAT-TATTATCCCAAATTTTTTCCCAAAATTATAAATTTAATATTATAATTTATTA
7455305 TTACCCATTACTACAAATAT
65 TTACCCATTACTACAAATAT
* * *** *** *
7455325 CATAACTATTAAATTATTAT---AAATTATTTAATAAACATTAATTTTTGTTAA-ATTATTAATA
1 AATAA-TATT-AATTATTATCCCAAATTTTTTCCCAAA-ATT-ATAAAT-TTAATATTA-TAATT
* *** **
7455386 TATAATTAATAATTAC--CATTTA-
60 TATTATTACCCATTACTACAAATAT
* *
7455408 AAAAATAATTAATATATTATCCCGAATTTTTTCCCAAAATTATAAATTTAATATTATAATTTATT
1 AATAAT-ATTAAT-TATTATCCCAAATTTTTTCCCAAAATTATAAATTTAATATTATAATTTATT
7455473 ATTACCCATTACTACAAATAT
64 ATTACCCATTACTACAAATAT
7455494 AATAATATTAATTATTAT
1 AATAATATTAATTATTAT
7455512 AAATTATTTA
Statistics
Matches: 137, Mismatches: 34, Indels: 32
0.67 0.17 0.16
Matches are distributed among these distances:
82 4 0.03
83 42 0.31
84 24 0.18
85 21 0.15
86 43 0.31
87 3 0.02
ACGTcount: A:0.44, C:0.10, G:0.01, T:0.45
Consensus pattern (84 bp):
AATAATATTAATTATTATCCCAAATTTTTTCCCAAAATTATAAATTTAATATTATAATTTATTAT
TACCCATTACTACAAATAT
Found at i:7455471 original size:169 final size:169
Alignment explanation
Indices: 7455155--7455560 Score: 730
Period size: 169 Copynumber: 2.4 Consensus size: 169
7455145 TTTTGGAATA
*
7455155 ATAATAATATTAATTATTAGAAATTATTTAATAAACATTAA-TTTTGTTAAATTATTAATATATA
1 ATAATAATATTAATTATTATAAATTATTTAATAAACATTAATTTTTGTTAAATTATTAATATATA
*
7455219 ATTAATAAATTACCATTTAAAAAATAATTTAATATATTATCCCTAATTTTTTCCCAAAATTATAA
66 ATTAATAAATTACCATTTAAAAAATAATTTAATATATTATCCCGAATTTTTTCCCAAAATTATAA
7455284 ATTTAATATTATAATTTATTATTACCCATTACTACAAAT
131 ATTTAATATTATAATTTATTATTACCCATTACTACAAAT
*
7455323 ATCATAACTATTAAATTATTATAAATTATTTAATAAACATTAATTTTTGTTAAATTATTAATATA
1 ATAATAA-TATT-AATTATTATAAATTATTTAATAAACATTAATTTTTGTTAAATTATTAATATA
7455388 TAATTAAT-AATTACCATTTAAAAAATAA-TTAATATATTATCCCGAATTTTTTCCCAAAATTAT
64 TAATTAATAAATTACCATTTAAAAAATAATTTAATATATTATCCCGAATTTTTTCCCAAAATTAT
7455451 AAATTTAATATTATAATTTATTATTACCCATTACTACAAAT
129 AAATTTAATATTATAATTTATTATTACCCATTACTACAAAT
*
7455492 ATAATAATATTAATTATTATAAATTATTTAATAAACATTAATTTTTGTTAAATTATT-ATATGTA
1 ATAATAATATTAATTATTATAAATTATTTAATAAACATTAATTTTTGTTAAATTATTAATATATA
7455556 ATTAA
66 ATTAA
7455561 AGATAATGTG
Statistics
Matches: 230, Mismatches: 5, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
166 11 0.05
167 46 0.20
168 10 0.04
169 85 0.37
170 49 0.21
171 29 0.13
ACGTcount: A:0.46, C:0.08, G:0.01, T:0.45
Consensus pattern (169 bp):
ATAATAATATTAATTATTATAAATTATTTAATAAACATTAATTTTTGTTAAATTATTAATATATA
ATTAATAAATTACCATTTAAAAAATAATTTAATATATTATCCCGAATTTTTTCCCAAAATTATAA
ATTTAATATTATAATTTATTATTACCCATTACTACAAAT
Found at i:7455785 original size:15 final size:16
Alignment explanation
Indices: 7455762--7455808 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 16
7455752 TTTTTAAACA
*
7455762 ATTAATAATTAAAAAT
1 ATTATTAATTAAAAAT
*
7455778 ATT-TTAATTAAATTAGT
1 ATTATTAATTAAA--AAT
7455795 ATTATTAATTAAAA
1 ATTATTAATTAAAA
7455809 TAATTAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 8 0.31
16 4 0.15
17 5 0.19
18 9 0.35
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATTATTAATTAAAAAT
Found at i:7456090 original size:16 final size:16
Alignment explanation
Indices: 7456037--7456173 Score: 75
Period size: 16 Copynumber: 8.1 Consensus size: 16
7456027 GTATAACGAT
7456037 TATTAATTATTAATAATTA
1 TATT-ATTA-TAAT-ATTA
*
7456056 TATGATTA-AATAATTA
1 TATTATTATAAT-ATTA
*
7456072 TATTA-TATTAATATAA
1 TATTATTA-TAATATTA
* *
7456088 TATTATCATATTATTA
1 TATTATTATAATATTA
*
7456104 TATATAATTAAATTATATTAA
1 TAT-T-ATT--ATAATATT-A
7456125 TATTATTA-AATATTA
1 TATTATTATAATATTA
7456140 TTATTATTAT-ATATTA
1 -TATTATTATAATATTA
* *
7456156 TTATAATTATAAAATTA
1 -TATTATTATAATATTA
7456173 T
1 T
7456174 TAACTGTATT
Statistics
Matches: 95, Mismatches: 12, Indels: 25
0.72 0.09 0.19
Matches are distributed among these distances:
15 3 0.03
16 58 0.61
17 11 0.12
18 6 0.06
19 6 0.06
20 7 0.07
21 4 0.04
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.52
Consensus pattern (16 bp):
TATTATTATAATATTA
Found at i:7456119 original size:42 final size:45
Alignment explanation
Indices: 7456065--7456166 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 45
7456055 ATATGATTAA
* *
7456065 ATAATTATATTATATTAATA-TAAT-ATTATCA-TATTATTATAT
1 ATAATTAAATTATATTAATATTAATAAATATCATTATTATTATAT
* *
7456107 ATAATTAAATTATATTAATATTATTAAATATTATTATTATTATAT
1 ATAATTAAATTATATTAATATTAATAAATATCATTATTATTATAT
*
7456152 ATTATTATAATTATA
1 ATAATTA-AATTATA
7456167 AAATTATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
42 19 0.37
43 3 0.06
44 5 0.10
45 17 0.33
46 7 0.14
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (45 bp):
ATAATTAAATTATATTAATATTAATAAATATCATTATTATTATAT
Found at i:7456157 original size:19 final size:19
Alignment explanation
Indices: 7456075--7456165 Score: 66
Period size: 19 Copynumber: 4.9 Consensus size: 19
7456065 ATAATTATAT
* *
7456075 TATATTAATA-TAATATTA
1 TATATTATTATTATTATTA
*
7456093 TCATATTATTATATATAATTA
1 T-ATATTATTAT-TATTATTA
*
7456114 -A-ATTA-TATTAATATTA
1 TATATTATTATTATTATTA
*
7456130 T-TAAATATTATTATTATTA
1 TAT-ATTATTATTATTATTA
*
7456149 TATATTATTATAATTAT
1 TATATTATTATTATTAT
7456166 AAAATTATTA
Statistics
Matches: 56, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
16 6 0.11
17 3 0.05
18 8 0.14
19 32 0.57
20 1 0.02
21 6 0.11
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (19 bp):
TATATTATTATTATTATTA
Found at i:7456175 original size:3 final size:3
Alignment explanation
Indices: 7456068--7456165 Score: 55
Period size: 3 Copynumber: 33.7 Consensus size: 3
7456058 TGATTAAATA
* * * *
7456068 ATT A-T ATT A-T ATT AAT A-T AAT ATT ATC A-T ATT ATT ATAT ATA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
* * *
7456110 ATT A-A ATT A-T ATT AAT ATT ATT AAAT ATT ATT ATT ATT ATAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT AT-T ATT
*
7456155 ATT ATA ATT AT
1 ATT ATT ATT AT
7456166 AAAATTATTA
Statistics
Matches: 72, Mismatches: 14, Indels: 18
0.69 0.13 0.17
Matches are distributed among these distances:
2 10 0.14
3 54 0.75
4 8 0.11
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (3 bp):
ATT
Found at i:7456264 original size:30 final size:30
Alignment explanation
Indices: 7456224--7456297 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 30
7456214 ATATTTAAAA
* *
7456224 ATTTATTAATTA-ATGATTATAATCTATTCA-T
1 ATTTA-TAATTATATGAATATAA-ATATT-ATT
7456255 ATTTATAATTATATGAATATAAATATTATT
1 ATTTATAATTATATGAATATAAATATTATT
*
7456285 ATTTATAAATATA
1 ATTTATAATTATA
7456298 GTATAATAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
29 1 0.03
30 23 0.61
31 14 0.37
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (30 bp):
ATTTATAATTATATGAATATAAATATTATT
Found at i:7456421 original size:20 final size:21
Alignment explanation
Indices: 7456398--7456446 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
7456388 ATTATTATTA
*
7456398 ATTAAT-AATTAATAATTAAT
1 ATTAATAAAATAATAATTAAT
*
7456418 ATT-ATAAAATAATATTTAAT
1 ATTAATAAAATAATAATTAAT
*
7456438 ATTAGTAAA
1 ATTAATAAA
7456447 TCATAACAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 18 0.75
21 4 0.17
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTAATAAAATAATAATTAAT
Found at i:7456447 original size:20 final size:20
Alignment explanation
Indices: 7456407--7456446 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
7456397 AATTAATAAT
7456407 TAATAATTAATATTATAAAA
1 TAATAATTAATATTATAAAA
*
7456427 TAATATTTAATATTAGTAAA
1 TAATAATTAATATTA-TAAA
7456447 TCATAACAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (20 bp):
TAATAATTAATATTATAAAA
Found at i:7456483 original size:9 final size:9
Alignment explanation
Indices: 7456471--7456528 Score: 64
Period size: 9 Copynumber: 6.2 Consensus size: 9
7456461 ATATTATTAT
7456471 TAATTATAA
1 TAATTATAA
*
7456480 TAATTATTA
1 TAATTATAA
*
7456489 TACTTAT-A
1 TAATTATAA
7456497 TAAATTATAA
1 T-AATTATAA
7456507 TAAATATATAA
1 T-AAT-TATAA
7456518 TAATTATAA
1 TAATTATAA
7456527 TA
1 TA
7456529 TTGAGCATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
8 2 0.05
9 26 0.60
10 9 0.21
11 6 0.14
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (9 bp):
TAATTATAA
Found at i:7456489 original size:27 final size:26
Alignment explanation
Indices: 7456386--7456509 Score: 75
Period size: 27 Copynumber: 4.8 Consensus size: 26
7456376 GTTATAATAG
*
7456386 ATATTATTATTAATTAATAATTAATAATT
1 ATATTATTATTAATT-ATAA-TAAT-TTT
* *
7456415 A-A-TATTA-TAA-AATAAT-ATTTA
1 ATATTATTATTAATTATAATAATTTT
* * *
7456436 ATATTAGTA--AATCATAACAATATTT
1 ATATTATTATTAATTATAATAAT-TTT
7456461 ATATTATTATTAATTATAATAATTATT
1 ATATTATTATTAATTATAATAATT-TT
*
7456488 ATACTTA-TATAAATTATAATAA
1 ATA-TTATTATTAATTATAATAA
7456510 ATATATAATA
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
21 2 0.03
22 5 0.07
23 9 0.12
24 6 0.08
25 10 0.13
26 4 0.05
27 34 0.45
28 4 0.05
29 1 0.01
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (26 bp):
ATATTATTATTAATTATAATAATTTT
Found at i:7456525 original size:27 final size:27
Alignment explanation
Indices: 7456407--7456526 Score: 77
Period size: 27 Copynumber: 4.4 Consensus size: 27
7456397 AATTAATAAT
* * *
7456407 TAATAATTA-ATATTATAAAATAATATT
1 TAATAATTATAAATTATAATA-AATATA
* * *
7456434 TAAT-ATTAGTAAATCATAA-CAATATT
1 TAATAATTA-TAAATTATAATAAATATA
* * *
7456460 TATATTATTATTAATTATAATAATTATTA
1 TA-ATAATTATAAATTATAATAAATA-TA
* *
7456489 TACTTA-TATAAATTATAATAAATATA
1 TAATAATTATAAATTATAATAAATATA
7456515 TAATAATTATAA
1 TAATAATTATAA
7456527 TATTGAGCAT
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
26 18 0.25
27 35 0.48
28 17 0.23
29 3 0.04
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.45
Consensus pattern (27 bp):
TAATAATTATAAATTATAATAAATATA
Found at i:7457085 original size:26 final size:26
Alignment explanation
Indices: 7457039--7457118 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 26
7457029 TTAAAATAAC
*
7457039 AATTATTAATATTATAA-TAATAAATCT
1 AATTATT-ATATTAGAATTAATAAAT-T
7457066 AATTATTATATTA-AATTAATAAATT
1 AATTATTATATTAGAATTAATAAATT
*
7457091 AATT-TCATTATTAGAATTAATTAAATT
1 AATTATTA-TATTAGAATTAA-TAAATT
7457118 A
1 A
7457119 TTGATTTTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
24 2 0.04
25 12 0.25
26 20 0.42
27 14 0.29
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (26 bp):
AATTATTATATTAGAATTAATAAATT
Found at i:7457119 original size:18 final size:17
Alignment explanation
Indices: 7457070--7457120 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
7457060 AAATCTAATT
*
7457070 ATTATATTAAATTAATAA
1 ATTA-ATTAAATTATTAA
**
7457088 ATTAATTTCATTATTAGA
1 ATTAATTAAATTATTA-A
7457106 ATTAATTAAATTATT
1 ATTAATTAAATTATT
7457121 GATTTTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 9 0.33
18 18 0.67
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
ATTAATTAAATTATTAA
Found at i:7457310 original size:13 final size:12
Alignment explanation
Indices: 7457255--7457307 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
7457245 GTTTTATTTT
*
7457255 TAATT-ATTAAA
1 TAATTAATTCAA
7457266 TAATTAA-T-AA
1 TAATTAATTCAA
7457276 TAATTAATATCAA
1 TAATTAAT-TCAA
*
7457289 TCATTAATTCAA
1 TAATTAATTCAA
7457301 TAATTAA
1 TAATTAA
7457308 ATTGTTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
10 9 0.25
11 6 0.17
12 12 0.33
13 9 0.25
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATTAATTCAA
Found at i:7457768 original size:13 final size:13
Alignment explanation
Indices: 7457750--7457774 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7457740 ATAATAAAAA
7457750 TTAAATATTTAAT
1 TTAAATATTTAAT
7457763 TTAAATATTTAA
1 TTAAATATTTAA
7457775 AATTTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAAATATTTAAT
Found at i:7458013 original size:157 final size:152
Alignment explanation
Indices: 7457848--7458140 Score: 390
Period size: 157 Copynumber: 1.9 Consensus size: 152
7457838 ATCGATCAAG
* * * * *
7457848 TTCAAATAGTTATGTCTATTTGAATAATTATTTATTTAAAATCATTAT-GACATTTTGTTTTGAC
1 TTCAAATAGTTATGACTATCTAAACAATTATCTATTTAAAATCATTATAG-CATTTTGTTTTGAC
* * *
7457912 AAAAAACAATTGTTTTAGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTTTTAATATT
65 AAAAAACAATTATTTCAGTTCATAAAAGCTTATT--AAA-AAAA-AATACTAA-TTATTAATATT
**
7457977 TTAAAAATTAATTTGTTTACTGAACAAA
125 CCAAAAATTAATTTGTTTACTGAACAAA
* * * *
7458005 TTCAAATAGTTATGACTATCTAAACAATTGTCTATTTAAAATTATTATAGCCTTTTGTTTTGTCA
1 TTCAAATAGTTATGACTATCTAAACAATTATCTATTTAAAATCATTATAGCATTTTGTTTTGACA
*
7458070 TAAAACAATTATTTCAGTTCATAAAAGCTTATTAAAAAAAAATACTAATTATTAATATTCCAAAA
66 AAAAACAATTATTTCAGTTCATAAAAGCTTATTAAAAAAAAATACTAATTATTAATATTCCAAAA
7458135 ATTAAT
131 ATTAAT
7458141 AAGTTAGTGA
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
152 20 0.17
153 8 0.07
154 4 0.03
155 3 0.03
157 84 0.70
158 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (152 bp):
TTCAAATAGTTATGACTATCTAAACAATTATCTATTTAAAATCATTATAGCATTTTGTTTTGACA
AAAAACAATTATTTCAGTTCATAAAAGCTTATTAAAAAAAAATACTAATTATTAATATTCCAAAA
ATTAATTTGTTTACTGAACAAA
Found at i:7458711 original size:19 final size:19
Alignment explanation
Indices: 7458671--7458725 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
7458661 ATTAAATTTA
*
7458671 AATTT-ATTAATTA-AT-T
1 AATTTAATTAATTATATAC
7458687 AATTTAATTAATTATATAC
1 AATTTAATTAATTATATAC
*
7458706 AATTTAGA-TATTTATATAC
1 AATTTA-ATTAATTATATAC
7458725 A
1 A
7458726 TAATATAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
16 5 0.15
17 8 0.24
18 2 0.06
19 17 0.52
20 1 0.03
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (19 bp):
AATTTAATTAATTATATAC
Found at i:7459020 original size:22 final size:20
Alignment explanation
Indices: 7458995--7459046 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
7458985 AATTATTGAT
7458995 AATAATAATATATCAATATTAC
1 AATAATAATATAT-AATA-TAC
* *
7459017 AATAATTATA-ATAATATAT
1 AATAATAATATATAATATAC
7459036 AATAATAATAT
1 AATAATAATAT
7459047 TATTATTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 11 0.42
20 4 0.15
21 2 0.08
22 9 0.35
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAATAATATATAATATAC
Found at i:7459039 original size:19 final size:18
Alignment explanation
Indices: 7458996--7459049 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 18
7458986 ATTATTGATA
7458996 ATAATAATATATCAATATT
1 ATAATAATATAT-AATATT
* *
7459015 ACAATAAT-TATAATAAT
1 ATAATAATATATAATATT
7459032 AT-ATAATA-ATAATATT
1 ATAATAATATATAATATT
7459048 AT
1 AT
7459050 TATTATTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
16 14 0.47
17 6 0.20
18 3 0.10
19 7 0.23
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAATAATATATAATATT
Found at i:7459060 original size:19 final size:18
Alignment explanation
Indices: 7459038--7459093 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
7459028 TAATATATAA
*
7459038 TAATAATATTATTATTATT
1 TAATAATATTATT-TAATT
7459057 TAATAATATTAATTTAATT
1 TAATAATATT-ATTTAATT
*
7459076 TAATTAATAATATTTAAT
1 TAA-TAATATTATTTAAT
7459094 CTTCATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 24 0.73
20 9 0.27
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATAATATTATTTAATT
Found at i:7459422 original size:15 final size:15
Alignment explanation
Indices: 7459404--7459433 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7459394 ATTCTAATCT
7459404 ATTATAATTATAATA
1 ATTATAATTATAATA
7459419 ATTATAATTATAATA
1 ATTATAATTATAATA
7459434 TTACAAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTATAATTATAATA
Found at i:7459644 original size:10 final size:10
Alignment explanation
Indices: 7459629--7459669 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
7459619 TGTTATAACC
7459629 TAATTACTTA
1 TAATTACTTA
*
7459639 TAATTAATTA
1 TAATTACTTA
7459649 TTAATT--TTA
1 -TAATTACTTA
7459658 TAATTACTTA
1 TAATTACTTA
7459668 TA
1 TA
7459670 TAATAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 5 0.19
9 3 0.11
10 14 0.52
11 5 0.19
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (10 bp):
TAATTACTTA
Found at i:7459660 original size:19 final size:20
Alignment explanation
Indices: 7459636--7459673 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7459626 ACCTAATTAC
7459636 TTATAATTAATTAT-TAATT
1 TTATAATTAATTATATAATT
*
7459655 TTATAATTACTTATATAAT
1 TTATAATTAATTATATAAT
7459674 AATAAACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATAATTAATTATATAATT
Found at i:7459865 original size:20 final size:21
Alignment explanation
Indices: 7459836--7459876 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
7459826 AACCAACTAT
7459836 AAATTAATTATAATA-ATATTA
1 AAATTAATTAT-ATAGATATTA
7459857 AAATT-ATTATATAGATATTA
1 AAATTAATTATATAGATATTA
7459877 TAGTATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.16
20 11 0.58
21 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
AAATTAATTATATAGATATTA
Found at i:7460218 original size:17 final size:17
Alignment explanation
Indices: 7460198--7460264 Score: 62
Period size: 17 Copynumber: 3.5 Consensus size: 17
7460188 TATAACAAAA
7460198 TATTAATTAATTAATAT
1 TATTAATTAATTAATAT
*
7460215 TATTAATTATTTAATAT
1 TATTAATTAATTAATAT
7460232 AACAGAATATTAATTAATTAATAT
1 -------TATTAATTAATTAATAT
7460256 TATTAATTA
1 TATTAATTA
7460265 CCTAAATATT
Statistics
Matches: 41, Mismatches: 2, Indels: 14
0.72 0.04 0.25
Matches are distributed among these distances:
17 25 0.61
24 16 0.39
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (17 bp):
TATTAATTAATTAATAT
Found at i:7460218 original size:41 final size:41
Alignment explanation
Indices: 7460173--7460264 Score: 175
Period size: 41 Copynumber: 2.2 Consensus size: 41
7460163 AAATAAATTC
7460173 TTATTAATTATTTAATATAACAAAATATTAATTAATTAATA
1 TTATTAATTATTTAATATAACAAAATATTAATTAATTAATA
*
7460214 TTATTAATTATTTAATATAACAGAATATTAATTAATTAATA
1 TTATTAATTATTTAATATAACAAAATATTAATTAATTAATA
7460255 TTATTAATTA
1 TTATTAATTA
7460265 CCTAAATATT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (41 bp):
TTATTAATTATTTAATATAACAAAATATTAATTAATTAATA
Found at i:7460225 original size:24 final size:24
Alignment explanation
Indices: 7460173--7460255 Score: 74
Period size: 24 Copynumber: 3.8 Consensus size: 24
7460163 AAATAAATTC
*
7460173 TTATTAATTATTTAATATAACAAA
1 TTATTAATTAATTAATATAACAAA
*
7460197 --A-T-ATTAATTAAT-T-A-ATA
1 TTATTAATTAATTAATATAACAAA
*
7460214 TTATTAATTATTTAATATAACAGAA
1 TTATTAATTAATTAATATAACA-AA
7460239 -TATTAATTAATTAATAT
1 TTATTAATTAATTAATAT
7460256 TATTAATTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
17 2 0.04
18 1 0.02
19 2 0.04
20 10 0.22
21 10 0.22
22 2 0.04
23 1 0.02
24 17 0.37
25 1 0.02
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.47
Consensus pattern (24 bp):
TTATTAATTAATTAATATAACAAA
Found at i:7460512 original size:18 final size:19
Alignment explanation
Indices: 7460453--7460513 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 19
7460443 AATGATAAAC
7460453 ATTT-ACTTATTAATTATTATA
1 ATTTAACTTATT-A-TATT-TA
7460474 ATTTAACTTATTATA--TA
1 ATTTAACTTATTATATTTA
7460491 ATTTAAC-TATTATATTTA
1 ATTTAACTTATTATATTTA
7460509 ATTTA
1 ATTTA
7460514 TTAACTATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
16 7 0.19
17 9 0.24
18 7 0.19
20 2 0.05
21 5 0.14
22 7 0.19
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTAACTTATTATATTTA
Found at i:7461322 original size:48 final size:48
Alignment explanation
Indices: 7461231--7461333 Score: 143
Period size: 48 Copynumber: 2.1 Consensus size: 48
7461221 TTATTTTATT
* * *
7461231 ATTTTTTTTGGATTTCTAAATTTTTCACCATTTGAGTCAATTTAGAAA
1 ATTTTTTTTGAATTTCTAAATTTTTCACCATTTGAGCCAATTTAAAAA
* * * *
7461279 TTTTTTTTTTAATTTCTAAATTTTTCACCATTTGGGCCTATTTAAAAA
1 ATTTTTTTTGAATTTCTAAATTTTTCACCATTTGAGCCAATTTAAAAA
7461327 ATTTTTT
1 ATTTTTT
7461334 ATTTCTTTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.54
Consensus pattern (48 bp):
ATTTTTTTTGAATTTCTAAATTTTTCACCATTTGAGCCAATTTAAAAA
Found at i:7461731 original size:15 final size:15
Alignment explanation
Indices: 7461695--7461733 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
7461685 TTTATTCCCA
7461695 AAATTT-ATTTTTTT
1 AAATTTAATTTTTTT
*
7461709 AATTTTTAATTTTTTT
1 AA-ATTTAATTTTTTT
7461725 AAATTTAAT
1 AAATTTAAT
7461734 CATGCAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 2 0.10
15 9 0.43
16 10 0.48
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
AAATTTAATTTTTTT
Found at i:7461814 original size:20 final size:19
Alignment explanation
Indices: 7461767--7461815 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
7461757 AATAAGCACA
7461767 TAAAAAAATAAATAAAAAAC
1 TAAAAAAA-AAATAAAAAAC
*
7461787 TAAGAAAAAACATAAAAATAC
1 TAA-AAAAAAAATAAAAA-AC
7461808 -AAAAAAAA
1 TAAAAAAAA
7461816 CAAAATGGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 6 0.23
20 13 0.50
21 7 0.27
ACGTcount: A:0.80, C:0.06, G:0.02, T:0.12
Consensus pattern (19 bp):
TAAAAAAAAAATAAAAAAC
Found at i:7462251 original size:43 final size:45
Alignment explanation
Indices: 7462203--7462342 Score: 125
Period size: 44 Copynumber: 3.2 Consensus size: 45
7462193 ATTTAATTAG
7462203 TATTAT-ATTAATTTATAGTATTGTAA-TAATAA-TTAATAT-TAAA
1 TATTATAATTAATTTATAGTA-T-TAATTAATAATTTAATATATAAA
* *
7462246 TATTATAATTAATTAATATTATTAATTAATAATTTAATATAATAAA
1 TATTATAATTAATTTATAGTATTAATTAATAATTTAATAT-ATAAA
* *
7462292 TATAATAATT-ATTTATA-TA-TAA-TATATAATTATATATATATATA
1 TATTATAATTAATTTATAGTATTAATTA-ATAATT-TA-ATATATAAA
*
7462336 GATTATA
1 TATTATA
7462343 TATATTATAG
Statistics
Matches: 82, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
42 5 0.06
43 22 0.27
44 32 0.39
45 10 0.12
46 13 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (45 bp):
TATTATAATTAATTTATAGTATTAATTAATAATTTAATATATAAA
Found at i:7462260 original size:17 final size:17
Alignment explanation
Indices: 7462244--7462275 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7462234 ATTAATATTA
7462244 AATATTA-TAATTAATT
1 AATATTATTAATTAATT
7462260 AATATTATTAATTAAT
1 AATATTATTAATTAAT
7462276 AATTTAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATATTATTAATTAATT
Found at i:7462269 original size:13 final size:13
Alignment explanation
Indices: 7462232--7462289 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
7462222 ATTGTAATAA
7462232 TAATTAATATTA-
1 TAATTAATATTAT
* *
7462244 -AA-TATTATAAT
1 TAATTAATATTAT
7462255 TAATTAATATTAT
1 TAATTAATATTAT
*
7462268 TAATTAATAAT-T
1 TAATTAATATTAT
7462280 TAATATAATA
1 TAAT-TAATA
7462290 AATATAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
10 6 0.16
11 2 0.05
12 7 0.19
13 22 0.59
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTAATATTAT
Found at i:7462288 original size:17 final size:17
Alignment explanation
Indices: 7462249--7462351 Score: 58
Period size: 17 Copynumber: 6.1 Consensus size: 17
7462239 TATTAAATAT
7462249 TATAATTAATTAATATTA
1 TATAATTAA-TAATATTA
7462267 T-TAATTAATAAT-TTAA
1 TATAATTAATAATATT-A
* *
7462283 TATAATAAAT-ATAATA
1 TATAATTAATAATATTA
* * *
7462299 -ATTATTTATATATAATA
1 TATAATTAATA-ATATTA
7462316 TATAATT-AT-ATATATA
1 TATAATTAATAATAT-TA
7462332 TATAGATT-ATATATATTA
1 TATA-ATTAATA-ATATTA
7462350 TA
1 TA
7462352 GTAAATAAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
15 11 0.16
16 15 0.22
17 28 0.41
18 10 0.15
19 4 0.06
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (17 bp):
TATAATTAATAATATTA
Found at i:7462312 original size:2 final size:2
Alignment explanation
Indices: 7462305--7462351 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
7462295 AATAATTATT
*
7462305 TA TA TA TA -A TA TA TA -A T- TA TA TA TA TA TA TA GA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7462343 TA TA T- TA TA
1 TA TA TA TA TA
7462352 GTAAATAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
1 5 0.13
2 33 0.87
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7462322 original size:21 final size:22
Alignment explanation
Indices: 7462226--7462333 Score: 80
Period size: 21 Copynumber: 4.9 Consensus size: 22
7462216 TATAGTATTG
* *
7462226 TAATAATAATTAATAT-TAAATA
1 TAATAATTATTTATATAT-AATA
* * *
7462248 TTATAATTAATTA-ATATTAT-
1 TAATAATTATTTATATATAATA
*
7462268 TAATTAATAATTTAATATAATAAATA
1 TAA-TAATTATTT-ATAT-AT-AATA
7462294 TAATAATTATTTATATATAATA
1 TAATAATTATTTATATATAATA
*
7462316 T-ATAATTATATATATATA
1 TAATAATTATTTATATATA
7462334 TAGATTATAT
Statistics
Matches: 68, Mismatches: 11, Indels: 15
0.72 0.12 0.16
Matches are distributed among these distances:
20 2 0.03
21 27 0.40
22 16 0.24
23 4 0.06
24 6 0.09
25 10 0.15
26 3 0.04
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TAATAATTATTTATATATAATA
Found at i:7462806 original size:17 final size:14
Alignment explanation
Indices: 7462770--7462810 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
7462760 TAATATAATT
7462770 TATAATAATTATAA
1 TATAATAATTATAA
7462784 TATAATAATTATTAA
1 TATAATAATTA-TAA
*
7462799 TAT-GTAATTATA
1 TATAATAATTATA
7462811 TTTATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 2 0.08
14 17 0.68
15 6 0.24
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (14 bp):
TATAATAATTATAA
Found at i:7463417 original size:21 final size:23
Alignment explanation
Indices: 7463391--7463442 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
7463381 AATTATAAAC
*
7463391 AATTATTAAAT-TTATATTAT-T
1 AATTATTAAATAATATATTATAT
7463412 AATTATT-AATAATATATTATAT
1 AATTATTAAATAATATATTATAT
*
7463434 ACTTATTAA
1 AATTATTAA
7463443 TATTATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 15 0.58
22 7 0.27
23 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTATTAAATAATATATTATAT
Found at i:7464191 original size:21 final size:21
Alignment explanation
Indices: 7464144--7464191 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
7464134 ATTTATATCC
* * *
7464144 TAATTTGAATAATAATTATTA
1 TAATATGAATAATAATGAATA
7464165 TAATATGAATAAT-ATGAATA
1 TAATATGAATAATAATGAATA
7464185 TATATAT
1 TA-ATAT
7464192 ATAAATCTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (21 bp):
TAATATGAATAATAATGAATA
Found at i:7465163 original size:6 final size:6
Alignment explanation
Indices: 7465152--7465190 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
7465142 TCAATATTGT
* *
7465152 TTAATA TTAATA CTAAT- TTAATA TTGATA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
7465191 GCTTTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:7465173 original size:17 final size:17
Alignment explanation
Indices: 7465151--7465190 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7465141 ATCAATATTG
7465151 TTTAATATTAATACTAA
1 TTTAATATTAATACTAA
* *
7465168 TTTAATATTGATATTAA
1 TTTAATATTAATACTAA
7465185 TATTAA
1 T-TTAA
7465191 GCTTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTAATATTAATACTAA
Found at i:7467113 original size:10 final size:10
Alignment explanation
Indices: 7467083--7467129 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
7467073 AATATTAAAT
7467083 TTATAATTAA
1 TTATAATTAA
*
7467093 TAATTAA-TAA
1 TTA-TAATTAA
7467103 TTATAATTAA
1 TTATAATTAA
7467113 TTATAATT-A
1 TTATAATTAA
7467122 -TATAATTA
1 TTATAATTA
7467130 TAAAAATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
8 7 0.22
9 4 0.12
10 18 0.56
11 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
TTATAATTAA
Found at i:7467113 original size:24 final size:24
Alignment explanation
Indices: 7467086--7467150 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
7467076 ATTAAATTTA
7467086 TAATTAATAATTA-ATAATTATAAT
1 TAATT-ATAATTATATAATTATAAT
*
7467110 TAATTATAATTATATAATTATAAA
1 TAATTATAATTATATAATTATAAT
* *
7467134 AATATTATATTTATATA
1 TA-ATTATAATTATATA
7467151 TTTAAATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.19
24 16 0.44
25 13 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TAATTATAATTATATAATTATAAT
Found at i:7467132 original size:6 final size:6
Alignment explanation
Indices: 7467083--7467123 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
7467073 AATATTAAAT
7467083 TTATAA TTAATAA TTAATAA TTATAA -T-TAA TTATAA TTATA
1 TTATAA TT-ATAA TT-ATAA TTATAA TTATAA TTATAA TTATA
7467124 TAATTATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 3 0.09
5 2 0.06
6 14 0.44
7 13 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
TTATAA
Found at i:7467523 original size:8 final size:8
Alignment explanation
Indices: 7467510--7467543 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
7467500 ATTATATAAT
7467510 ATATTATA
1 ATATTATA
7467518 ATATTATA
1 ATATTATA
7467526 ATATTATA
1 ATATTATA
*
7467534 ATAATATA
1 ATATTATA
7467542 AT
1 AT
7467544 TATAGTGTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
ATATTATA
Found at i:7467629 original size:29 final size:29
Alignment explanation
Indices: 7467574--7467629 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
7467564 TAAAATATTT
* * *
7467574 ATAATTATATTTAATATTTATATAAATTA
1 ATAATTATATATAATATATATACAAATTA
7467603 ATAATTATATATAATATA-ATTACAAAT
1 ATAATTATATATAATATATA-TACAAAT
7467630 ATTTTAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 1 0.04
29 22 0.96
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (29 bp):
ATAATTATATATAATATATATACAAATTA
Found at i:7467809 original size:25 final size:28
Alignment explanation
Indices: 7467778--7467837 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
7467768 ATGTATATTT
*
7467778 ATAAATATATAAATTAATTATTAT-TAATA
1 ATAAATA-ATATA-TAATTATTATATAATA
7467807 ATAAATAATATAATAATTATTATATAATA
1 ATAAATAATAT-ATAATTATTATATAATA
7467836 AT
1 AT
7467838 TATTTCAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (28 bp):
ATAAATAATATATAATTATTATATAATA
Found at i:7467833 original size:14 final size:14
Alignment explanation
Indices: 7467792--7467841 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
7467782 ATATATAAAT
7467792 TAATTATTAT-TAA
1 TAATTATTATATAA
* *
7467805 TAATAAATAATATAA
1 TAAT-TATTATATAA
7467820 TAATTATTATATAA
1 TAATTATTATATAA
7467834 TAATTATT
1 TAATTATT
7467842 TCAATAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 20 0.65
15 7 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATTATTATATAA
Found at i:7467961 original size:18 final size:18
Alignment explanation
Indices: 7467940--7467991 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
7467930 AATATAATTT
7467940 ATTATTTATTAATAATAA
1 ATTATTTATTAATAATAA
* *
7467958 ATTACTTATTAATAATTA
1 ATTATTTATTAATAATAA
*
7467976 ATAATTTTATT-ATAAT
1 ATTA-TTTATTAATAAT
7467992 TTTTTTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTATTTATTAATAATAA
Found at i:7468958 original size:12 final size:11
Alignment explanation
Indices: 7468915--7468971 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 11
7468905 TACAATTTGT
7468915 TAATAATTTATAA
1 TAATAA-TT-TAA
*
7468928 TAATTATATTAA
1 TAATAAT-TTAA
*
7468940 TATTAATTTATA
1 TAATAATTTA-A
7468952 TAATAATCTTAA
1 TAATAAT-TTAA
7468964 TAATAATT
1 TAATAATT
7468972 ACAATTAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
11 4 0.11
12 24 0.65
13 9 0.24
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (11 bp):
TAATAATTTAA
Found at i:7468963 original size:24 final size:25
Alignment explanation
Indices: 7468915--7468971 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
7468905 TACAATTTGT
*
7468915 TAATAATTTATAATAATTATATTAA
1 TAATAATTTATAATAATAATATTAA
* *
7468940 TATTAATTTAT-ATAATAATCTTAA
1 TAATAATTTATAATAATAATATTAA
7468964 TAATAATT
1 TAATAATT
7468972 ACAATTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 18 0.64
25 10 0.36
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
TAATAATTTATAATAATAATATTAA
Found at i:7469017 original size:14 final size:13
Alignment explanation
Indices: 7468915--7469020 Score: 51
Period size: 14 Copynumber: 7.9 Consensus size: 13
7468905 TACAATTTGT
*
7468915 TAATAATTTATAA
1 TAATAATTAATAA
*
7468928 TAATTATATTAATAT
1 TAA-TA-ATTAATAA
7468943 TAAT--TTATATAA
1 TAATAATTA-ATAA
*
7468955 TAAT-CTTAATAA
1 TAATAATTAATAA
7468967 TAATTACAATT-A-AA
1 TAA-T--AATTAATAA
* *
7468981 TATTCATTACATAA
1 TAATAATTA-ATAA
7468995 TAATAATTAATAA
1 TAATAATTAATAA
*
7469008 TATTATATTAATA
1 TAATA-ATTAATA
7469021 CGTTATACAT
Statistics
Matches: 72, Mismatches: 9, Indels: 23
0.69 0.09 0.22
Matches are distributed among these distances:
11 6 0.08
12 14 0.19
13 17 0.24
14 23 0.32
15 10 0.14
16 2 0.03
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (13 bp):
TAATAATTAATAA
Found at i:7469953 original size:21 final size:21
Alignment explanation
Indices: 7469913--7469966 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
7469903 AATTAAATAA
*
7469913 TTATAAATAT--TATATTAAT
1 TTATAAATATAATATATAAAT
7469932 TTATAAATATAATATATAAAT
1 TTATAAATATAATATATAAAT
*
7469953 TGT-TAAATTTAATA
1 T-TATAAATATAATA
7469967 ATTTAATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 10 0.33
21 19 0.63
22 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TTATAAATATAATATATAAAT
Found at i:7470431 original size:23 final size:21
Alignment explanation
Indices: 7470388--7470435 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
7470378 TAATTTCAAA
7470388 ATTAATATATAACTTATTAAT
1 ATTAATATATAACTTATTAAT
7470409 ATTAATATTAATAAC-TATATAAT
1 ATTAATA-T-ATAACTTAT-TAAT
7470432 ATTA
1 ATTA
7470436 TAGTTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.29
22 4 0.17
23 13 0.54
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTAATATATAACTTATTAAT
Found at i:7471480 original size:181 final size:180
Alignment explanation
Indices: 7470885--7471697 Score: 707
Period size: 181 Copynumber: 4.5 Consensus size: 180
7470875 CTTTAATTTT
* * * * *
7470885 TTAATATTATTTTATCTTAG-ATAGGCTTATATGAATCGAAGTAATTATTTTATTACAAAAC-AA
1 TTAATATTATTTTAT-TTAGAATAAGCTTATATGAATAGAAATAATTATTTTATGACAAAGCAAA
* * * * * * * * * ***
7470948 AAGCTCACAATGATTTGAAATAGATTATTATTTAAATAGTCATGACTATTTGAACTTGTTTGGTA
65 AAG-TCATAACGATTTGAAATAAATAATTATTCAAATAATCATAACGATTTAAACTTGTTCAATA
* *
7471013 AACATATTTATTTTTTAAATCTATTACTTATAAATTATCAAAATATTAATAAA
129 AA-AGATTTATTTTTTAAATCTATTACTTATTAATTATCAAAATATTAATAAA
* * * * *
7471066 TTAATATTATTTTATTTCGAATAAGC-TAGTATGAACAAAAATAATTGTTTTATGACAAAACAAA
1 TTAATATTATTTTATTTAGAATAAGCTTA-TATGAATAGAAATAATTATTTTATGACAAAGCAAA
* * * *
7471130 AAGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACGATTTGAACTTGTTCAATAA
65 AAGTCATAACGATTTGAAATAAATAATTATTCAAATAATCATAACGATTTAAACTTGTTCAATAA
* * **
7471195 AAGATTTA-TTTTTAAATCTTTTACTTATTAATTGTCTTAAT-TTAATAAA
130 AAGATTTATTTTTTAAATCTATTACTTATTAATTATCAAAATATTAATAAA
** * * * * *
7471244 TTTGTATTATTTTATTCAAAATAAGCTTGTATGAATAGAAAAAATCATTTTATGACAAAGCAAAA
1 TTAATATTATTTTATTTAGAATAAGCTTATATGAATAGAAATAATTATTTTATGACAAAGCAAAA
* * * ** * ***
7471309 TGTTATAGCGATTTCCAATAAATAATTATTCAAATAATTATAATTTTTTAAACTTGTTCAATAAA
66 AGTCATAACGATTTGAAATAAATAATTATTCAAATAATCATAACGATTTAAACTTGTTCAATAAA
* * * *
7471374 TAGATTTATTTTTTAAATCTCTTAATTATTAATTTTCAAAATATTAATAAC
131 -AGATTTATTTTTTAAATCTATTACTTATTAATTATCAAAATATTAATAAA
* * *
7471425 TTAATATTATTTTATTTTGAATAAGCTTATATGAATTGAAATAATTTTTTTATGACAGAAG-AAA
1 TTAATATTATTTTATTTAGAATAAGCTTATATGAATAGAAATAATTATTTTATGACA-AAGCAAA
* * * ** * * * * *
7471489 AGGTCATAACGATTTGAAATAGATAACTATTCAAATACCCATGACTG-TTT-GATTTAGTTTAGT
65 AAGTCATAACGATTTGAAATAAATAATTATTCAAATAATCATAAC-GATTTAAACTT-GTTCAAT
* * * * *
7471552 AAACATATTTAATTTTTTACATATTTTACTTATTAATTGTCAAAA-ATTAATAAA
128 AAA-AGATTT-ATTTTTTAAATCTATTACTTATTAATTATCAAAATATTAATAAA
* * ** * *
7471606 TTTATATTATTTTAATCCGAATAAGCTTGAGTA--AATAGAAACT-ATTATCTTATAACAGAA-C
1 TTAATATTATTTTATTTAGAATAAGCTT-A-TATGAATAGAAA-TAATTATTTTATGACA-AAGC
* *
7471667 AAAAAGTTATAATGATTTGAAATAAATAATT
62 AAAAAGTCATAACGATTTGAAATAAATAATT
7471698 GCTTAAATAA
Statistics
Matches: 512, Mismatches: 105, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
178 111 0.22
179 36 0.07
180 42 0.08
181 282 0.55
182 39 0.08
183 2 0.00
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (180 bp):
TTAATATTATTTTATTTAGAATAAGCTTATATGAATAGAAATAATTATTTTATGACAAAGCAAAA
AGTCATAACGATTTGAAATAAATAATTATTCAAATAATCATAACGATTTAAACTTGTTCAATAAA
AGATTTATTTTTTAAATCTATTACTTATTAATTATCAAAATATTAATAAA
Found at i:7471742 original size:359 final size:356
Alignment explanation
Indices: 7470995--7471743 Score: 855
Period size: 359 Copynumber: 2.1 Consensus size: 356
7470985 AGTCATGACT
* *
7470995 ATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCTATTACTTATAAATTATCAAAATATT
1 ATTTGAACTTGTTTGATAAACATATTTATTTTTTAAATCTATTAATTATAAATTATCAAAATATT
7471060 AATAAATTAATATTATTTTATTTCGAATAAGCTAGTATGAACAAAAATAATTGTTTTATGACAAA
66 AATAAATTAATATTATTTTATTTCGAATAAGCTAGTATGAACAAAAATAATTGTTTTATGACAAA
* * * **
7471125 ACAAAAAGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACGATTTGAACTTGTTC
131 ACAAAAAGTCATAACGATTTGAAATAAATAACTATTCAAATACCCATAACGATTTGAACTTGTTC
* ** * *
7471190 AATAAAAGATTTATTTTTAAATCTTTTACTTATTAATTGTCTTAATTTAATAAATTTGTATTATT
196 AATAAAAGATTTATTTTTAAATATTTTACTTATTAATTGTCAAAAATTAATAAATTTATATTATT
* * * * * *
7471255 TTATTCAAAATAAGCTTGTATGAATAGAAAAAATCATTTTATGACAAAGCAAAATGTTATAGCGA
261 TTAATCAAAATAAGCTTGTATAAATAGAAAAAATCATCTTATAACAAAGCAAAAAGTTATAACGA
*
7471320 TTTCCAATAAATAATTATTCAAATAATTATA
326 TTTCAAATAAATAATTATTCAAATAATTATA
* ** * * * * *
7471351 ATTTTTTAAACTTGTTCAATAAATAGATTTATTTTTTAAATCTCTTAATTATTAATTTTCAAAAT
1 A---TTTGAACTTGTTTGATAAACATATTTATTTTTTAAATCTATTAATTATAAATTATCAAAAT
* * *** *
7471416 ATTAATAACTTAATATTATTTTATTTTGAATAAGCTTA-TATGAATTGAAATAATTTTTTTATGA
63 ATTAATAAATTAATATTATTTTATTTCGAATAAGC-TAGTATGAACAAAAATAATTGTTTTATGA
* * * * * *
7471480 CAGAAGAAAAGGTCATAACGATTTGAAATAGATAACTATTCAAATACCCATGACTG-TTTG-ATT
127 CAAAACAAAAAGTCATAACGATTTGAAATAAATAACTATTCAAATACCCATAAC-GATTTGAACT
* * * *
7471543 TAGTTTAGTAAACATATTTAATTTTTTACATATTTTACTTATTAATTGTCAAAAATTAATAAATT
191 T-GTTCAATAAA-AGATTT-A-TTTTTAAATATTTTACTTATTAATTGTCAAAAATTAATAAATT
** ** *
7471608 TATATTATTTTAATCCGAATAAGCTTG-AGTAAATAGAAACTATTATCTTATAACAGAA-CAAAA
252 TATATTATTTTAATCAAAATAAGCTTGTA-TAAATAGAAAAAATCATCTTATAACA-AAGCAAAA
* * *
7471671 AGTTATAATGATTTGAAATAAATAATTGCTT-AAATAATCT-TA
315 AGTTATAACGATTTCAAATAAATAATT-ATTCAAATAAT-TATA
**
7471713 ATTTGAACCAGTTTGATAAACATATTTATTT
1 ATTTGAACTTGTTTGATAAACATATTTATTT
7471744 ACTTGAATTA
Statistics
Matches: 322, Mismatches: 58, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
356 1 0.00
358 3 0.01
359 185 0.57
360 8 0.02
361 2 0.01
362 118 0.37
363 5 0.02
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (356 bp):
ATTTGAACTTGTTTGATAAACATATTTATTTTTTAAATCTATTAATTATAAATTATCAAAATATT
AATAAATTAATATTATTTTATTTCGAATAAGCTAGTATGAACAAAAATAATTGTTTTATGACAAA
ACAAAAAGTCATAACGATTTGAAATAAATAACTATTCAAATACCCATAACGATTTGAACTTGTTC
AATAAAAGATTTATTTTTAAATATTTTACTTATTAATTGTCAAAAATTAATAAATTTATATTATT
TTAATCAAAATAAGCTTGTATAAATAGAAAAAATCATCTTATAACAAAGCAAAAAGTTATAACGA
TTTCAAATAAATAATTATTCAAATAATTATA
Found at i:7472179 original size:16 final size:17
Alignment explanation
Indices: 7472158--7472190 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7472148 TAACAATTTG
7472158 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
7472174 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
7472191 TGAATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:7472824 original size:181 final size:181
Alignment explanation
Indices: 7472424--7473000 Score: 518
Period size: 181 Copynumber: 3.2 Consensus size: 181
7472414 TTCTAAATTT
* * * * * * * * *
7472424 TAATAAATTTGTATTACTATATTTCGAATAAGCATGTATGAACTA-AAACAATTATTTTTTGACT
1 TAATAAATTAGTATTATTTTATTCCGAATAAACTTGTATGAA-TAGAAACAATTATTTTATAACA
* ** * * ** *
7472488 AAACAAAAGATCA-AAATAATTTGGAATAGATAATTA-TTCTAATAGTCTTAACTATTTGAAC-T
65 AAACAAAAGATCATAAA-GATTTAAAATAAATAA-TAGTTCAAATAGTAAT-ACTATTTAAACTT
* * *
7472550 GCTTTGGA-AAACACATTTATT-TTT-AA-ATC---CTTATTAATTTTT-GAAATAG
127 GC--TCGATAAACAAATTTATTATTTAAATATCGAACTTATTAATTTTTAGAAATAA
* * * ** *
7472599 TAATAAATTGGTATTATTTTATTCTGTATAATTTTGTATGAATAGAAACAATTATTTTATAATAA
1 TAATAAATTAGTATTATTTTATTCCGAATAAACTTGTATGAATAGAAACAATTATTTTATAACAA
* * * * *
7472664 AATAAAATATCATAACGATTTAAAATAAATAATAGTTCAAAT-GGATATGACTATTTAAACTTGT
66 AACAAAAGATCATAAAGATTTAAAATAAATAATAGTTCAAATAGTA-AT-ACTATTTAAACTTGC
* * * *
7472728 TCGGTAAACAGATTTATTTTTTAAATCTCGAACTTATTAATTTTTAG-AATAA
129 TCGATAAACAAATTTATTATTTAAATATCGAACTTATTAATTTTTAGAAATAA
* * * *
7472780 TAATAAACTAGTATTATTTTATTCCAAATAAACTTGTGTGAATAGAAACAATTATTTTATGACAA
1 TAATAAATTAGTATTATTTTATTCCGAATAAACTTGTATGAATAGAAACAATTATTTTATAACAA
* * * *
7472845 AACAAAAGATCATAAAGATTTGAAATATATAATTGTTCAAATAGTAATACTATTTGAACTTGCTC
66 AACAAAAGATCATAAAGATTTAAAATAAATAATAGTTCAAATAGTAATACTATTTAAACTTGCTC
* *** *
7472910 GATAAATAAATTTATTATTTAAATATTTTACTTATTAA-TTTTAGAAATAT
131 GATAAACAAATTTATTATTTAAATATCGAACTTATTAATTTTTAGAAATAA
* * *
7472960 TAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGA
1 TAATAAATTAGTATTATTTTATTCCGAATAAACTTGTATGA
7473001 CAAAACAAAT
Statistics
Matches: 321, Mismatches: 66, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
174 7 0.02
175 100 0.31
176 7 0.02
177 2 0.01
178 2 0.01
179 6 0.02
180 84 0.26
181 110 0.34
182 3 0.01
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (181 bp):
TAATAAATTAGTATTATTTTATTCCGAATAAACTTGTATGAATAGAAACAATTATTTTATAACAA
AACAAAAGATCATAAAGATTTAAAATAAATAATAGTTCAAATAGTAATACTATTTAAACTTGCTC
GATAAACAAATTTATTATTTAAATATCGAACTTATTAATTTTTAGAAATAA
Found at i:7472980 original size:180 final size:179
Alignment explanation
Indices: 7471777--7473000 Score: 801
Period size: 175 Copynumber: 6.9 Consensus size: 179
7471767 TTGATTATTT
* * * * * * * * * *
7471777 AAACAAAAGGTAATAACGATTTGAAATAAAAAATTGTTCATATAGCCTTAAATATTTGAACTAGT
1 AAACAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGT
* * * * *
7471842 TC-AGTAAATAAA-TTATTTTT-AAATTCATAGTTATCTAATTTTA-AAAAATTATTATATTAGT
66 TCGA-TAAATAAATTTATTTTTAAAATT-TTACTTAT-TAATTTTAGAAATATTAATAAATTAGT
* * * * *
7471903 ATTATTTTATTTTGAATAAACTTGTGTGAATAGAAATAATTGTTTTAATGAGA
128 ATTATTTTATTTCGAATAAACTTGTATGAATAGAAACAATTATTTT-ATGACA
* * * * *
7471956 TAACAAAAGGTTTATAACA-A-TTGAAAATATATAATTGTT--AATAATCATAACTATTTGAACT
1 AAACAAAA-GATCATAA-AGATTTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * *
7472017 GGTTC-AGTAAATAGATTAACTTTTTAAAATTTT--TTATTAATTTTTGAAATATTAGTAAATTA
63 TGTTCGA-TAAATAAATTTA-TTTTTAAAATTTTACTTATTAATTTTAGAAATATTAATAAATTA
* * ** * * *
7472079 GTATTA-TTTATTCCAAAATAGGCTTTTTAATG-ATGAAAAACCAATTGTTTTATGAC-
126 GTATTATTTTATTTC-GAATAAAC-TTGT-ATGAAT-AGAAA-CAATTATTTTATGACA
* * * * * **
7472135 AAACAAAAGTTTATAACA-ATTTGAAATAGATAATTATTCAAATAGCCATAATTATTTGAA-TAA
1 AAACAAAAGATCATAA-AGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
* * ** * * ** *
7472198 TTTGATAAACT-AATTTATTTTTTAAAACTCCACTT-CTAATTTTGGAAATATTAATAAAACAAT
65 TTCGATAAA-TAAATTTA-TTTTTAAAATTTTACTTATTAATTTTAGAAATATTAATAAATTAGT
* * * * * * *
7472261 ATTATTTTATTTTGGAA-AAACTTTTATGTACT-GAAATAGTTGTTTTATGATA
128 ATTATTTTA-TTTCGAATAAACTTGTATG-AATAGAAACAATTATTTTATGACA
** * * * * * *
7472313 AAGTAAAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTCATAACAATTTAAACTTAT
1 AAACAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGT
* * * * * ** * *
7472378 TTGGTAAATAGA-TT-TTTTGAAAA-TTT-CTCATTAATTTTCTAAATTTTAATAAATTTGTATT
66 TCGATAAATAAATTTATTTTTAAAATTTTACTTATTAATTTTAGAAATATTAATAAATTAGTATT
* * * * * *
7472439 ACTATATTTCGAATAAGCATGTATGAACTA-AAACAATTATTTTTTGACT
131 ATTTTATTTCGAATAAACTTGTATGAA-TAGAAACAATTATTTTATGACA
* * * * *
7472488 AAACAAAAGATCA-AAATAATTTGGAATAGATAATTATTCTAATAGTCTTAACTATTTGAAC-TG
1 AAACAAAAGATCATAAA-GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
* * * * * * *
7472551 CTTTGGA-AAACACATTTATTTTT-AAA---TCCTTATTAATTTTTGAAATAGTAATAAATTGGT
65 --TTCGATAAATAAATTTATTTTTAAAATTTTACTTATTAATTTTAGAAATATTAATAAATTAGT
* ** * *
7472611 ATTATTTTA-TTCTGTATAATTTTGTATGAATAGAAACAATTATTTTATAATA
128 ATTATTTTATTTC-GAATAAACTTGTATGAATAGAAACAATTATTTTATGACA
* * * * * * * * *
7472663 AAATAAAATATCATAACGATTTAAAATAAATAATAGTTCAAATGGAT-ATGACTATTTAAACTTG
1 AAACAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAATAG-TCATAACTATTTGAACTTG
* * * * ** * *
7472727 TTCGGTAAACAGATTTATTTTTTAAATCTCGAACTTATTAATTTTTAG-AATAATAATAAACTAG
65 TTCGATAAATAAATTTATTTTTAAAAT-T-TTACTTATTAA-TTTTAGAAATATTAATAAATTAG
* * *
7472791 TATTATTTTATTCCAAATAAACTTGTGTGAATAGAAACAATTATTTTATGACA
127 TATTATTTTATTTCGAATAAACTTGTATGAATAGAAACAATTATTTTATGACA
* * *
7472844 AAACAAAAGATCATAAAGATTTGAAATATATAATTGTTCAAATAGTAAT-ACTATTTGAACTTGC
1 AAACAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGT
*
7472908 TCGATAAATAAATTTATTATTTAAATATTTTACTTATTAATTTTAGAAATATTAATAAATTAATA
66 TCGATAAATAAATTTATT-TTTAAA-ATTTTACTTATTAATTTTAGAAATATTAATAAATTAGTA
*
7472973 TTATTTTATTTCGAATAAGCTTGTATGA
129 TTATTTTATTTCGAATAAACTTGTATGA
7473001 CAAAACAAAT
Statistics
Matches: 804, Mismatches: 186, Indels: 109
0.73 0.17 0.10
Matches are distributed among these distances:
174 21 0.03
175 219 0.27
176 24 0.03
177 29 0.04
178 139 0.17
179 69 0.09
180 161 0.20
181 131 0.16
182 11 0.01
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.41
Consensus pattern (179 bp):
AAACAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGT
TCGATAAATAAATTTATTTTTAAAATTTTACTTATTAATTTTAGAAATATTAATAAATTAGTATT
ATTTTATTTCGAATAAACTTGTATGAATAGAAACAATTATTTTATGACA
Found at i:7473024 original size:159 final size:158
Alignment explanation
Indices: 7472837--7473158 Score: 404
Period size: 159 Copynumber: 2.0 Consensus size: 158
7472827 ACAATTATTT
* *
7472837 TATGACAAAACAAAAGATCATAAAGATTTGAAATATATAATTGTTCAAATAGTAAT-ACTATTTG
1 TATGACAAAACAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAACAGTAATAACTA-TTG
* *
7472901 AACT-TGCTCGATAAATA-A-ATTTATTATTTAAATATTTTACTTATTAATTTTAGAAATATTAA
65 AA-TGTGCTC-AAAAAAACATATTTATT-TTTAAAT-TTTTACTTATTAATTTTAGAAATATTAA
7472963 TAAATTAATATTATTTTATTTCG-AATAAGCTTG
126 TAAATTAATATTATTTTA-TTCGAAATAAGCTTG
* * *
7472996 TATGACAAAACAAATTG-TCATAACGATTTGAAATAGATAATTGTTCAAACAGTCATAACTATTG
1 TATGACAAAACAAA-AGATCATAAAGATTTGAAATAGATAATTGTTCAAACAGTAATAACTATTG
* * * * * *
7473060 AATGTGTTCAAAAAAACATATTTATTTTTAAATTTTTATTTATTAATTTTTGGAGTTTTAATAAA
65 AATGTGCTCAAAAAAACATATTTATTTTTAAATTTTTACTTATTAATTTTAGAAATATTAATAAA
*
7473125 TTTATATTATTTTATTCGAAATAAGCTTG
130 TTAATATTATTTTATTCGAAATAAGCTTG
*
7473154 CATGA
1 TATGA
7473159 ACATAACTAA
Statistics
Matches: 142, Mismatches: 15, Indels: 13
0.84 0.09 0.08
Matches are distributed among these distances:
157 4 0.03
158 60 0.42
159 66 0.46
160 12 0.08
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.42
Consensus pattern (158 bp):
TATGACAAAACAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAACAGTAATAACTATTGA
ATGTGCTCAAAAAAACATATTTATTTTTAAATTTTTACTTATTAATTTTAGAAATATTAATAAAT
TAATATTATTTTATTCGAAATAAGCTTG
Found at i:7473389 original size:182 final size:180
Alignment explanation
Indices: 7472996--7473454 Score: 485
Period size: 182 Copynumber: 2.5 Consensus size: 180
7472986 AATAAGCTTG
* * * * *
7472996 TATGACAAAACAAATTGTCATAACG-ATTTGAAATAGATAATTGTTCAAACAGTCATAACTA-TT
1 TATGACAAAACAAATGGTCACAATGTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
** * * *
7473059 GAA-TGTGTTCAAAAAAACATATTTA-TTTTTAAATTTTTATTTATTAATTTTTGGAGTTTTAAT
66 GAACT-TGTTC-AGTAAACATATTTATTTTTTAAATTTTTACTCATTAATTTTTGGAGTATTAAT
* *
7473122 AAATTTATATTATTTTATTCGAAATAAGCTTGCATGAACATAACTAATTATTT
129 AAATTTAGACTATTTTATTCGAAATAAGCTT-CATGAACATAACTAATTATTT
* * * *
7473175 TATGACAAAACAAATGGTCATAATGT-TTTGAAATAGATAAATATTTAGATAGTCATAACTATTT
1 TATGACAAAACAAATGGTCACAATGTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
* *
7473239 GAACTTGTTCAGTAAACATATTCATTTTTTTAATTCTCTTACTCATTAATTTTTGGTA-TATTAA
66 GAACTTGTTCAGTAAACATATTTATTTTTTAAATT-T-TTACTCATTAATTTTTGG-AGTATTAA
7473303 TAAA-TTAGAGCTATTTTATTTC-AAATAAGCTT-ATGTTAAC-TGAAAC-AATTATTT
128 TAAATTTAGA-CTATTTTA-TTCGAAATAAGCTTCATG--AACAT--AACTAATTATTT
* * * * *
7473357 TATTACAAAATATAA-GGTCACAAT-TATTTGAAATATATAATTATTCAAATAGTCTTGACTATT
1 TATGACAAAACA-AATGGTCACAATGTATTTGAAATAGATAATTATTCAAATAGTCATAACTATT
**
7473420 TGAACTTGTTTGGTAAACATATTTATTTTTTAAAT
65 TGAACTTGTTCAGTAAACATATTTATTTTTTAAAT
7473455 CTTTCGCTTA
Statistics
Matches: 236, Mismatches: 29, Indels: 27
0.81 0.10 0.09
Matches are distributed among these distances:
179 64 0.27
180 22 0.09
181 8 0.03
182 133 0.56
183 9 0.04
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.43
Consensus pattern (180 bp):
TATGACAAAACAAATGGTCACAATGTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
GAACTTGTTCAGTAAACATATTTATTTTTTAAATTTTTACTCATTAATTTTTGGAGTATTAATAA
ATTTAGACTATTTTATTCGAAATAAGCTTCATGAACATAACTAATTATTT
Found at i:7473578 original size:19 final size:18
Alignment explanation
Indices: 7473554--7473600 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
7473544 TATTTACAAA
*
7473554 ACTATTTCAAATCATTAT
1 ACTATTTCAAATAATTAT
*
7473572 GACTATTT-GAATAATTAT
1 -ACTATTTCAAATAATTAT
7473590 -CTATTTCAAAT
1 ACTATTTCAAAT
7473601 TGTTATTACC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 6 0.25
17 3 0.12
18 8 0.33
19 7 0.29
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (18 bp):
ACTATTTCAAATAATTAT
Found at i:7473878 original size:181 final size:179
Alignment explanation
Indices: 7473559--7474199 Score: 684
Period size: 181 Copynumber: 3.5 Consensus size: 179
7473549 ACAAAACTAT
* * * *
7473559 TTCAAATCATTATGACTATTTGAATAATTATCTATTTCAAATTGTTATTACCTTTTGTTTTGTCA
1 TTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCA
* * * * * *
7473624 TAAAACAAATGTTTTTGTTCATATAAGTTTGTTTGGAATAAAATAATATTAATTTATTAATATTT
66 TAAAACAATTGTTTCTGTTCATACAAGCTTATTCGGAAT-AAATAAT-TTAATTTATTAATATTT
* * *
7473689 CAAAAATTAATACA-TAAGAGATTTTAAAAATAAATATGTTTGCCAT-ACCAA
129 CAAAAATTAATA-AGTAAGAGATTTTAAAAATGAATCTGTTTGAC-TGACCAA
* * * * * * *
7473740 TTCAATTAGTTATAACTATTTGACCAAATATTTATTTCAAATTGTTATGACCATTTGTTTTATCA
1 TTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCA
* * * *
7473805 TAAAACAATTGTTTCTGTTCATATAATCTTATTGGGAAGAAAGTAATGTTAATTTATTAATATTT
66 TAAAACAATTGTTTCTGTTCATACAAGCTTATTCGGAATAAA-TAAT-TTAATTTATTAATATTT
** * *
7473870 TGAAAATTAATAAGTAATG-GA-TTTAGAAAATGTATCT-TTTGGCTTGACCAA
129 CAAAAATTAATAAGTAA-GAGATTTTA-AAAATGAATCTGTTTGAC-TGACCAA
* * * * * ** *
7473921 TGCAAACAATTATGACTATTTGAATAATTATCTACTTCAAATCATTATGACCTTTTGTTTTCTCA
1 TTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCA
* * *
7473986 CAAAACAATTGTTTTTGTTCATACAAGCTTATTCAGAATAACATAATTCTAATTTATTAATATTT
66 TAAAACAATTGTTTCTGTTCATACAAGCTTATTCGGAATAA-ATAATT-TAATTTATTAATATTT
* * *
7474051 CAAAAATTAATAAGTGAGAGATTTAAAAAATGAATCTGTTT-ACTGAACAA
129 CAAAAATTAATAAGTAAGAGATTTTAAAAATGAATCTGTTTGACTGACCAA
* * * *
7474101 GTTCAAATAATTATAACTATTTGAACAATTATCTAGTTCAAATTGCTATAACCTTTTGTATTGTC
1 -TTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTC
* *
7474166 ATAAAATAATT-TTTGCTATTCATACAAGCTTATT
65 ATAAAACAATTGTTT-CTGTTCATACAAGCTTATT
7474200 TCAAATCTGT
Statistics
Matches: 379, Mismatches: 69, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
180 25 0.07
181 346 0.91
182 8 0.02
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.42
Consensus pattern (179 bp):
TTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCA
TAAAACAATTGTTTCTGTTCATACAAGCTTATTCGGAATAAATAATTTAATTTATTAATATTTCA
AAAATTAATAAGTAAGAGATTTTAAAAATGAATCTGTTTGACTGACCAA
Found at i:7475983 original size:13 final size:13
Alignment explanation
Indices: 7475965--7475989 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7475955 TATTAATTAG
7475965 TAGTTTAATTAAA
1 TAGTTTAATTAAA
7475978 TAGTTTAATTAA
1 TAGTTTAATTAA
7475990 TATTTTATGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAGTTTAATTAAA
Found at i:7475991 original size:12 final size:12
Alignment explanation
Indices: 7475957--7475996 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
7475947 AATAATATTA
*
7475957 TTAATTAGTAGT
1 TTAATTAATAGT
7475969 TTAATTAAATAGT
1 TTAATT-AATAGT
*
7475982 TTAATTAATATT
1 TTAATTAATAGT
7475994 TTA
1 TTA
7475997 TGAGTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (12 bp):
TTAATTAATAGT
Found at i:7476086 original size:16 final size:17
Alignment explanation
Indices: 7476027--7476093 Score: 61
Period size: 16 Copynumber: 4.1 Consensus size: 17
7476017 TAAATAACTT
*
7476027 ATTTAATAATAATTTTA
1 ATTTAATAATAATATTA
* *
7476044 ATCTTTAT-TTAA-ATTA
1 AT-TTAATAATAATATTA
7476060 ATTTAAATAATAATATT-
1 ATTT-AATAATAATATTA
7476077 ATTTAATAATAAT-TTA
1 ATTTAATAATAATATTA
7476093 A
1 A
7476094 GTATAATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
15 4 0.10
16 17 0.43
17 12 0.30
18 7 0.17
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATAATAATATTA
Found at i:7476099 original size:27 final size:26
Alignment explanation
Indices: 7476025--7476115 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 26
7476015 AATAAATAAC
* *
7476025 TTATTTAATAATAATTTTA-AT-CT-
1 TTATTTAATAATAATTTAATATAATA
*
7476048 TTATTTAA-ATTAATTTAAATAATAATA
1 TTATTTAATAATAATTT-AAT-ATAATA
7476075 TTATTTAATAATAATTTAAGTATAATA
1 TTATTTAATAATAATTTAA-TATAATA
*
7476102 -TAATTAATAA-AATT
1 TTATTTAATAATAATT
7476116 ATATTATATT
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
22 7 0.12
23 9 0.16
25 6 0.11
26 10 0.18
27 16 0.29
28 8 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (26 bp):
TTATTTAATAATAATTTAATATAATA
Found at i:7476118 original size:20 final size:20
Alignment explanation
Indices: 7476095--7476138 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7476085 ATAATTTAAG
7476095 TATAATATAATTA-ATAAAAT
1 TATAATAT-ATTAGATAAAAT
* *
7476115 TATATTATATTAGATAATAT
1 TATAATATATTAGATAAAAT
7476135 TATA
1 TATA
7476139 TCTATTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
TATAATATATTAGATAAAAT
Found at i:7476210 original size:22 final size:21
Alignment explanation
Indices: 7476154--7476211 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 21
7476144 TTCTAATTTT
*
7476154 TAATTATAA-AATTAATATAA
1 TAATTATAATAATTATTATAA
* *
7476174 T-ATTAAAATAA-TATTGTAA
1 TAATTATAATAATTATTATAA
7476193 TAATTATAATAATTTATTA
1 TAATTATAATAA-TTATTA
7476212 ATTATTGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 13 0.45
20 12 0.41
22 4 0.14
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TAATTATAATAATTATTATAA
Found at i:7476312 original size:26 final size:25
Alignment explanation
Indices: 7476256--7476316 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
7476246 ATAATTGCCT
7476256 AATTT-ATTAAAATTATTATTAATA
1 AATTTAATTAAAATTATTATTAATA
7476280 AATTTAATTAAAATATACTTA-TAAT-
1 AATTTAATTAAAAT-TA-TTATTAATA
7476305 AATATTAATTAA
1 AAT-TTAATTAA
7476317 TTTTCAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.15
25 11 0.33
26 14 0.42
27 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
AATTTAATTAAAATTATTATTAATA
Found at i:7476926 original size:14 final size:16
Alignment explanation
Indices: 7476909--7476940 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
7476899 TTTATAGTAT
7476909 TATAATTA-TA-AATA
1 TATAATTACTATAATA
7476923 TATAATTACTATAATA
1 TATAATTACTATAATA
7476939 TA
1 TA
7476941 ATTTATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
TATAATTACTATAATA
Found at i:7477210 original size:20 final size:20
Alignment explanation
Indices: 7477176--7477221 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7477166 TATTATTTAT
* *
7477176 TATTATAATTAAATTATTAC
1 TATTATAATTAAATTAATAA
7477196 TATTATAA-TATAATTAATAA
1 TATTATAATTA-AATTAATAA
7477216 TATTAT
1 TATTAT
7477222 TATTTAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTATAATTAAATTAATAA
Found at i:7477384 original size:13 final size:13
Alignment explanation
Indices: 7477368--7477410 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
7477358 ATTTTAATAA
7477368 ATTATGATTATAT
1 ATTATGATTATAT
* *
7477381 ATTATAATTATTT
1 ATTATGATTATAT
*
7477394 AATATGATT-TAT
1 ATTATGATTATAT
7477406 ATTAT
1 ATTAT
7477411 AAATAATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (13 bp):
ATTATGATTATAT
Found at i:7477410 original size:32 final size:33
Alignment explanation
Indices: 7477353--7477431 Score: 83
Period size: 35 Copynumber: 2.4 Consensus size: 33
7477343 CTAAACAGAT
7477353 TAATTATTTTAATAAATTATGATTAT-AT-ATTA
1 TAATTA-TTTAATAAATTATGATTATAATAATTA
*
7477385 TAATTATTTAATATGATTTAT-ATTATAAATAATTA
1 TAATTATTTAATA--AATTATGATTAT-AATAATTA
*
7477420 TAACTATTTAAT
1 TAATTATTTAAT
7477432 TATATAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
31 7 0.17
32 11 0.28
33 5 0.12
34 2 0.05
35 15 0.38
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (33 bp):
TAATTATTTAATAAATTATGATTATAATAATTA
Found at i:7477893 original size:16 final size:17
Alignment explanation
Indices: 7477872--7477904 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7477862 TAATGATTTA
7477872 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
7477888 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
7477905 TGCAATGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:7478430 original size:9 final size:9
Alignment explanation
Indices: 7478416--7478440 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7478406 AATATTATTA
7478416 TTTAAATAT
1 TTTAAATAT
7478425 TTTAAATAT
1 TTTAAATAT
7478434 TTTAAAT
1 TTTAAAT
7478441 CAATAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTAAATAT
Found at i:7478740 original size:6 final size:6
Alignment explanation
Indices: 7478729--7478767 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
7478719 AATAAAAAGC
* *
7478729 TTAATA TTAATA TCAATA TTAA-A TTAGTA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
7478768 ACAATATTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (6 bp):
TTAATA
Found at i:7478763 original size:17 final size:17
Alignment explanation
Indices: 7478729--7478768 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7478719 AATAAAAAGC
7478729 TTAATATTAATATCAATA
1 TTAA-ATTAATATCAATA
* *
7478747 TTAAATTAGTATTAATA
1 TTAAATTAATATCAATA
7478764 TTAAA
1 TTAAA
7478769 CAATATTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
TTAAATTAATATCAATA
Found at i:7479439 original size:24 final size:23
Alignment explanation
Indices: 7479408--7479483 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 23
7479398 ATTGTTATTA
7479408 AAAT-TATAATAAGTAATTAGTAT
1 AAATATATAATAAGTAATTA-TAT
7479431 AAATATATAATAAG-AATT-TA-
1 AAATATATAATAAGTAATTATAT
*
7479451 AATTA-ATAATAAGTAATTA-AT
1 AAATATATAATAAGTAATTATAT
*
7479472 ATAATTTATAAT
1 A-AATATATAAT
7479484 CTAATTAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
19 8 0.18
20 9 0.20
21 3 0.07
22 2 0.05
23 13 0.30
24 9 0.20
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (23 bp):
AAATATATAATAAGTAATTATAT
Found at i:7479476 original size:19 final size:19
Alignment explanation
Indices: 7479413--7479476 Score: 51
Period size: 19 Copynumber: 3.1 Consensus size: 19
7479403 TATTAAAATT
7479413 ATAATAAGTAATTAGTATAAATA
1 ATAATAAGTAATTA--AT--ATA
7479436 TATAATAAG-AATTTAA-ATTA
1 -ATAATAAGTAA-TTAATA-TA
7479456 ATAATAAGTAATTAATATA
1 ATAATAAGTAATTAATATA
7479475 AT
1 AT
7479477 TTATAATCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
19 17 0.47
20 5 0.14
22 1 0.03
23 2 0.06
24 11 0.31
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (19 bp):
ATAATAAGTAATTAATATA
Found at i:7480025 original size:21 final size:21
Alignment explanation
Indices: 7479987--7480026 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7479977 TATAGTAATA
*
7479987 AATTATTAAATAATTTATTGG
1 AATTATTAAATAACTTATTGG
7480008 AATTATT-AATATACTTATT
1 AATTATTAAATA-ACTTATT
7480027 TATTTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (21 bp):
AATTATTAAATAACTTATTGG
Found at i:7480415 original size:16 final size:15
Alignment explanation
Indices: 7480394--7480428 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
7480384 GTTTATACAT
7480394 GTTATAATTATAATAA
1 GTTATAATTATAAT-A
*
7480410 GTTATAATTTTAATA
1 GTTATAATTATAATA
7480425 GTTA
1 GTTA
7480429 ATTTAGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (15 bp):
GTTATAATTATAATA
Found at i:7480539 original size:25 final size:23
Alignment explanation
Indices: 7480511--7480575 Score: 58
Period size: 27 Copynumber: 2.5 Consensus size: 23
7480501 TTAAATATAT
7480511 TTATATTATTAAACTAATAATTAAG
1 TTATATTATTAAA-T-ATAATTAAG
7480536 TTATAAGTTTATTATAATATAATTAAG
1 TTAT-A--TTATTA-AATATAATTAAG
*
7480563 TTACTATAATTAA
1 TTA-TATTATTAA
7480576 TAACTACAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
24 1 0.03
25 9 0.26
26 1 0.03
27 13 0.38
28 8 0.24
29 2 0.06
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (23 bp):
TTATATTATTAAATATAATTAAG
Found at i:7480766 original size:47 final size:46
Alignment explanation
Indices: 7480679--7480769 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 46
7480669 TAATATAATT
** *
7480679 AATTATAATTATTATTATTTTAATACATTATTTTATTAATAATAAC
1 AATTATAATTATTATTATTTTAATACATTATAATACTAATAATAAC
7480725 AATTA-AAGTTATTAATTATTTTAATA-ATTTATAATACTAATAATA
1 AATTATAA-TTATT-ATTATTTTAATACA-TTATAATACTAATAATA
7480770 TTATAATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.05
46 11 0.28
47 26 0.67
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (46 bp):
AATTATAATTATTATTATTTTAATACATTATAATACTAATAATAAC
Found at i:7480839 original size:15 final size:14
Alignment explanation
Indices: 7480817--7480854 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
7480807 TTAATTAATA
7480817 TTATATAATAGAAT
1 TTATATAATAGAAT
*
7480831 TTAATATAA-ATAAT
1 TT-ATATAATAGAAT
7480845 TTATATAATA
1 TTATATAATA
7480855 ATGGATACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 6 0.29
14 9 0.43
15 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
TTATATAATAGAAT
Found at i:7481577 original size:41 final size:40
Alignment explanation
Indices: 7481527--7481641 Score: 123
Period size: 41 Copynumber: 2.9 Consensus size: 40
7481517 GTTATGACCT
*
7481527 TAACTATTAATATATATTTTAATATATAAATTATTAAATTA
1 TAACTATTAATATATATTATAATATATAAATTATTAAA-TA
*
7481568 TAACTATTAATA-ATAGTTATAATAT-TACAA-TATGAAATA
1 TAACTATTAATATATA-TTATAATATATA-AATTATTAAATA
* *
7481607 T-ACTAATAAT-TATATTAAAATTATATAAATTATTA
1 TAACTATTAATATATATTATAA-TATATAAATTATTA
7481642 GAGTAAATAA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
37 5 0.08
38 16 0.25
39 9 0.14
40 11 0.17
41 22 0.35
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.44
Consensus pattern (40 bp):
TAACTATTAATATATATTATAATATATAAATTATTAAATA
Found at i:7481843 original size:22 final size:23
Alignment explanation
Indices: 7481794--7481853 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 23
7481784 TCCAAAATAA
*
7481794 AATAACTATTTTATTATAATATTAT
1 AATAA-TA-TTTATTATAATAGTAT
7481819 AAT-ATATTTATTATAAT-GTACT
1 AATAATATTTATTATAATAGTA-T
7481841 AATAAATATTTAT
1 AAT-AATATTTAT
7481854 ACTTATGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.06
22 15 0.48
23 2 0.06
24 9 0.29
25 3 0.10
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (23 bp):
AATAATATTTATTATAATAGTAT
Found at i:7482001 original size:25 final size:25
Alignment explanation
Indices: 7481973--7482028 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
7481963 TATTTGACAT
*
7481973 ATATATTAT-ATTATATTTAAATATA
1 ATATATTATAATTATAATTAAA-ATA
*
7481998 ATATATTTTAATTATAATTAAAATA
1 ATATATTATAATTATAATTAAAATA
7482023 ATATAT
1 ATATAT
7482029 ATTATTACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 17 0.61
26 11 0.39
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
ATATATTATAATTATAATTAAAATA
Found at i:7482001 original size:27 final size:26
Alignment explanation
Indices: 7481971--7482043 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
7481961 CATATTTGAC
*
7481971 ATATATATTATATTATATTTAAATATA
1 ATATATATTATATTATAATTAAA-ATA
*
7481998 ATATATTTTA-ATTATAATTAAAATA
1 ATATATATTATATTATAATTAAAATA
*
7482023 ATATATATTATTACTATAATT
1 ATATATATTA-TATTATAATT
7482044 GTTTTAATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
25 12 0.30
26 11 0.28
27 17 0.43
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (26 bp):
ATATATATTATATTATAATTAAAATA
Found at i:7482013 original size:16 final size:15
Alignment explanation
Indices: 7481977--7482015 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7481967 TGACATATAT
*
7481977 ATTATATTATATTTA
1 ATTATAATATATTTA
*
7481992 AATATAATATATTTTA
1 ATTATAATATA-TTTA
7482008 ATTATAAT
1 ATTATAAT
7482016 TAAAATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATAATATATTTA
Found at i:7482236 original size:18 final size:18
Alignment explanation
Indices: 7482213--7482248 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
7482203 AAGTTAATAA
7482213 TATT-AATTTATATTAAAT
1 TATTAAATTT-TATTAAAT
7482231 TATTAAATTTTATTAAAT
1 TATTAAATTTTATTAAAT
7482249 AAATTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTAAATTTTATTAAAT
Found at i:7482764 original size:19 final size:19
Alignment explanation
Indices: 7482742--7482885 Score: 67
Period size: 19 Copynumber: 7.8 Consensus size: 19
7482732 TCTAATAGCT
*
7482742 TAATTATATTATAAATA-AA
1 TAATTATAAT-TAAATATAA
7482761 TAATTATAATTAAATATAA
1 TAATTATAATTAAATATAA
*
7482780 TAATTA-ATAGTATAAT-TAA
1 TAATTATA-ATTA-AATATAA
* *
7482799 TAAATATTAATT-AATTTAA
1 TAATTA-TAATTAAATATAA
* *
7482818 TAA-T-TAA-TATATAAAA
1 TAATTATAATTAAATATAA
*
7482834 CTAATTATAATACTAAATATTA
1 -TAATTATAAT--TAAATATAA
* *
7482856 TAGTT-T-ATTATATATAA
1 TAATTATAATTAAATATAA
7482873 TAATT-T-ATTAAAT
1 TAATTATAATTAAAT
7482886 TTAGTAAATT
Statistics
Matches: 97, Mismatches: 15, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
15 1 0.01
16 7 0.07
17 21 0.22
18 12 0.12
19 39 0.40
20 6 0.06
21 5 0.05
22 6 0.06
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (19 bp):
TAATTATAATTAAATATAA
Found at i:7482794 original size:12 final size:11
Alignment explanation
Indices: 7482756--7482831 Score: 64
Period size: 12 Copynumber: 6.4 Consensus size: 11
7482746 TATATTATAA
*
7482756 ATAAATAAT-T
1 ATAATTAATAT
7482766 ATAATTAAATAT
1 ATAATT-AATAT
7482778 AATAATTAATAGT
1 -ATAATTAATA-T
7482791 ATAATTAATAAAT
1 ATAATTAAT--AT
*
7482804 ATTAATTAATTT
1 A-TAATTAATAT
7482816 AATAATTAATAT
1 -ATAATTAATAT
7482828 ATAA
1 ATAA
7482832 AACTAATTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
10 5 0.09
11 7 0.13
12 24 0.44
13 10 0.18
14 9 0.16
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (11 bp):
ATAATTAATAT
Found at i:7482809 original size:26 final size:25
Alignment explanation
Indices: 7482755--7482852 Score: 80
Period size: 26 Copynumber: 4.0 Consensus size: 25
7482745 TTATATTATA
* *
7482755 AATAAATAAT-TATAATTAA-ATAT
1 AATAATTAATGTATAATTAATAAAT
7482778 AATAATTAATAGTATAATTAATAAAT
1 AATAATTAAT-GTATAATTAATAAAT
* * *
7482804 ATTAATTAATTTAATAATTAATATAT
1 AATAATTAATGT-ATAATTAATAAAT
* *
7482830 AA-AACTAAT-TATAA-TACTAAAT
1 AATAATTAATGTATAATTAATAAAT
7482852 A
1 A
7482853 TTATAGTTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
22 7 0.11
23 13 0.21
24 1 0.02
25 16 0.26
26 25 0.40
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (25 bp):
AATAATTAATGTATAATTAATAAAT
Found at i:7483298 original size:16 final size:16
Alignment explanation
Indices: 7483256--7483300 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7483246 ATTAATTTTT
7483256 TAAATTTTAATAAATTA
1 TAAATTTT-ATAAATTA
* *
7483273 TAAATATTATAAATTG
1 TAAATTTTATAAATTA
*
7483289 TTAATTTTATAA
1 TAAATTTTATAA
7483301 CAAATTATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
TAAATTTTATAAATTA
Found at i:7483567 original size:23 final size:23
Alignment explanation
Indices: 7483541--7483585 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7483531 AATTATTTAC
7483541 TTTAT-ATATTAATTATTAATATA
1 TTTATAATATTAATT-TTAATATA
*
7483564 TTTATAATATTAGTTTTAATAT
1 TTTATAATATTAATTTTAATAT
7483586 TATAATTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTATAATATTAATTTTAATATA
Found at i:7484636 original size:27 final size:26
Alignment explanation
Indices: 7484606--7484672 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 26
7484596 GAATATATTG
7484606 AATATATTAAAATTTATATATTATAAT
1 AATATATTAAAATTTATATATT-TAAT
7484633 AATATA-T--AATTCTATATATTTAAT
1 AATATATTAAAATT-TATATATTTAAT
* *
7484657 TATAAATTAAATATTT
1 AATATATTAAA-ATTT
7484673 TATTTAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
24 12 0.36
25 9 0.27
26 1 0.03
27 8 0.24
28 3 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (26 bp):
AATATATTAAAATTTATATATTTAAT
Found at i:7484637 original size:25 final size:24
Alignment explanation
Indices: 7484598--7484656 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
7484588 TTAGTAATGA
*
7484598 ATATATTGAAT-ATATTAAAATT-T
1 ATATATTTAATAATA-TAAAATTCT
*
7484621 ATATATTATAATAATATATAATTCT
1 ATATATT-TAATAATATAAAATTCT
7484646 ATATATTTAAT
1 ATATATTTAAT
7484657 TATAAATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 7 0.23
24 13 0.42
25 11 0.35
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
ATATATTTAATAATATAAAATTCT
Found at i:7485062 original size:24 final size:22
Alignment explanation
Indices: 7485023--7485066 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
7485013 AATATGTTTA
7485023 TTAGTTTAAAACTAATTATATAG
1 TTAGTTTAAAACTAA-TATATAG
7485046 TTAGTTTTAAATA-TAATATAT
1 TTAG-TTTAAA-ACTAATATAT
7485067 TTTAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 9 0.47
24 9 0.47
25 1 0.05
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (22 bp):
TTAGTTTAAAACTAATATATAG
Found at i:7485085 original size:27 final size:27
Alignment explanation
Indices: 7485052--7485107 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7485042 ATAGTTAGTT
* *
7485052 TTAAATATAATATAT-TT-TAATTATAA
1 TTAAA-ATAATATATATTATTACTATAA
7485078 TTAAAATAATATATATTATTACTATAA
1 TTAAAATAATATATATTATTACTATAA
7485105 TTA
1 TTA
7485108 TTTTAATTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 9 0.35
26 7 0.27
27 10 0.38
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (27 bp):
TTAAAATAATATATATTATTACTATAA
Found at i:7485586 original size:17 final size:16
Alignment explanation
Indices: 7485535--7485588 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
7485525 AACTAATCAT
7485535 ATATTATTTAATATATCA
1 ATATTATTTAAT-TAT-A
7485553 ATATTA-TTAA-T-TA
1 ATATTATTTAATTATA
7485566 ATATTATTTAAATTATA
1 ATATTATTT-AATTATA
7485583 ATATTA
1 ATATTA
7485589 AATTTATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
13 7 0.22
14 3 0.09
15 3 0.09
16 1 0.03
17 12 0.38
18 6 0.19
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATTATTTAATTATA
Done.